RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7967
(353 letters)
>3pzx_A Formate--tetrahydrofolate ligase; HET: TOE; 2.20A {Moorella
thermoacetica} PDB: 1fp7_A 1fpm_A* 3qb6_A* 3qus_A*
3rbo_A* 3sin_A* 1eg7_A
Length = 557
Score = 256 bits (656), Expect = 4e-81
Identities = 85/149 (57%), Positives = 108/149 (72%), Gaps = 11/149 (7%)
Query: 55 GLTGAMAVLLKDAVQPNLMQTLEGTPVMVHAGPFANIAHGCSSVVADLIALKLVGAEGYV 114
G+MA+L+KDA++PNL+QTLE TP +H GPFANIAHGC+S++A ALKL YV
Sbjct: 242 EAQGSMALLMKDAIKPNLVQTLENTPAFIHGGPFANIAHGCNSIIATKTALKLA---DYV 298
Query: 115 VTEAGFGSDIGMEKFFNIKCRTSGKIPDAVVLVTTVRALKMHGGGPSVVSGQPLKPEYTE 174
VTEAGFG+D+G EKF+++KCR +G PDA V+V TVRALKMHGG P K +
Sbjct: 299 VTEAGFGADLGAEKFYDVKCRYAGFKPDATVIVATVRALKMHGGVP--------KSDLAT 350
Query: 175 ENLDLVQKGCVNLEKHVSNGLKFGVPVVV 203
ENL+ +++G NLEKH+ N KFGVP VV
Sbjct: 351 ENLEALREGFANLEKHIENIGKFGVPAVV 379
Score = 95.3 bits (238), Expect = 8e-22
Identities = 42/93 (45%), Positives = 52/93 (55%), Gaps = 15/93 (16%)
Query: 240 RLNINPDTISWRRV-------------GQSPTEKNMERSTGFDISVASEVMAALALSKNL 286
LNI+P TI+WRRV G + R TGFDISVASEVMA L L+ +L
Sbjct: 156 VLNIDPRTITWRRVIDLNDRALRNIVIGLGGKANGVPRETGFDISVASEVMACLCLASDL 215
Query: 287 EDLYNRLSRMMVAEDKEGRPVTLDDLAAKQAGA 319
DL R SR++V +G+PVT DL A G+
Sbjct: 216 MDLKERFSRIVVGYTYDGKPVTAGDLEA--QGS 246
Score = 85.7 bits (213), Expect = 2e-18
Identities = 28/46 (60%), Positives = 34/46 (73%), Gaps = 1/46 (2%)
Query: 1 ITPTPLGEGKSTTTIGLAQALAAHKHKNTFACVRQPSQGPTFGIKG 46
ITPTP GEGK+TT++GL AL A K C+R+PS GP+FGIKG
Sbjct: 65 ITPTPAGEGKTTTSVGLTDAL-ARLGKRVMVCLREPSLGPSFGIKG 109
Score = 47.2 bits (113), Expect = 5e-06
Identities = 14/43 (32%), Positives = 21/43 (48%)
Query: 311 DLAAKQAGAHDAVVCENWAKGGAGAADLADAVIKATELKDKQF 353
+L + A V +WAKGG G +LA V++ E + F
Sbjct: 393 NLLYELCAKAGAEVALSWAKGGEGGLELARKVLQTLESRPSNF 435
>3do6_A Formate--tetrahydrofolate ligase; TM1766, putative
formyltetrahydrofolate synthetase, structural genomics;
HET: MSE; 1.85A {Thermotoga maritima}
Length = 543
Score = 255 bits (654), Expect = 6e-81
Identities = 80/149 (53%), Positives = 99/149 (66%), Gaps = 11/149 (7%)
Query: 55 GLTGAMAVLLKDAVQPNLMQTLEGTPVMVHAGPFANIAHGCSSVVADLIALKLVGAEGYV 114
G+ GAMAVLLKDA+ PNL+QT EGTP ++H GPFANIAHG +S++A +A+KL Y
Sbjct: 228 GIQGAMAVLLKDAINPNLVQTTEGTPALIHCGPFANIAHGTNSIIATKMAMKLS---EYT 284
Query: 115 VTEAGFGSDIGMEKFFNIKCRTSGKIPDAVVLVTTVRALKMHGGGPSVVSGQPLKPEYTE 174
VTEAGFG+D+G EKF + R G P+A VLV TVRALK HGG E
Sbjct: 285 VTEAGFGADLGAEKFIDFVSRVGGFYPNAAVLVATVRALKYHGGAN--------LKNIHE 336
Query: 175 ENLDLVQKGCVNLEKHVSNGLKFGVPVVV 203
ENL+ +++G NL HV N KF +PVVV
Sbjct: 337 ENLEALKEGFKNLRVHVENLRKFNLPVVV 365
Score = 96.9 bits (242), Expect = 3e-22
Identities = 31/93 (33%), Positives = 45/93 (48%), Gaps = 15/93 (16%)
Query: 240 RLNINPDTISWRRV-------------GQSPTEKNMERSTGFDISVASEVMAALALSKNL 286
L I+ + W+R G + R F I+ ASEVMA LALS+N+
Sbjct: 142 ELKIDITRVFWKRTMDMNDRALRSIVIGLGGSANGFPREDSFIITAASEVMAILALSENM 201
Query: 287 EDLYNRLSRMMVAEDKEGRPVTLDDLAAKQAGA 319
+DL RL +++VA D + + V + DL GA
Sbjct: 202 KDLKERLGKIIVALDADRKIVRISDLGI--QGA 232
Score = 86.1 bits (214), Expect = 1e-18
Identities = 24/46 (52%), Positives = 33/46 (71%), Gaps = 1/46 (2%)
Query: 1 ITPTPLGEGKSTTTIGLAQALAAHKHKNTFACVRQPSQGPTFGIKG 46
+TPTP GEGK+TT+IGL+ +L K + +R+PS GPT G+KG
Sbjct: 51 VTPTPAGEGKTTTSIGLSMSL-NRIGKKSIVTLREPSLGPTLGLKG 95
Score = 46.0 bits (110), Expect = 1e-05
Identities = 11/41 (26%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Query: 313 AAKQAGAHDAVVCENWAKGGAGAADLADAVIKATELKDKQF 353
++ G V E + KG G +LA AV +A + + +
Sbjct: 384 ECEKLGV-RVAVSEVFKKGSEGGVELAKAVAEAAKDVEPAY 423
>2eo2_A Adult MALE hypothalamus cDNA, riken FULL-length enriched library,
clone:A230045M11...; FTHFSDC1, structural genomics,
NPPSFA; NMR {Mus musculus}
Length = 71
Score = 95.1 bits (237), Expect = 6e-25
Identities = 32/53 (60%), Positives = 41/53 (77%), Gaps = 1/53 (1%)
Query: 199 VPVVVKGKREFSIIQRRRLLRLDINRTDPNTLTPEEITKFVRLNINPDTISWR 251
VP+V G REFS IQ RL +L I++TDP+TLT EE+ KF RLNI+P TI+W+
Sbjct: 20 VPLV-NGVREFSEIQLSRLKKLGIHKTDPSTLTEEEVRKFARLNIDPATITWQ 71
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 74.1 bits (181), Expect = 1e-14
Identities = 53/370 (14%), Positives = 105/370 (28%), Gaps = 129/370 (34%)
Query: 6 LGEGKSTTTIGLA-QALAAHKHKNTFAC----VRQPSQGPTFGIKGSHMALLLSGLTGAM 60
LG GK+ +A ++K + + S +L M
Sbjct: 159 LGSGKTW----VALDVCLSYKVQCKMDFKIFWL-------NLKNCNSPETVL------EM 201
Query: 61 AVLLKDAVQPNLMQTLEGTPVMVHAGPFANIAHGCSSVVADLIALKLVGAEGYV------ 114
L + PN + + NI S+ A+L +L+ ++ Y
Sbjct: 202 LQKLLYQIDPNWTSRSDHSS---------NIKLRIHSIQAEL--RRLLKSKPYENCLLVL 250
Query: 115 --VTEAGFGSDIGMEKFFNIKCRTSGKIPDAVVLVTTVR----ALKMHGGGPSVVSGQPL 168
V + FN+ C+ L+TT R + + +S
Sbjct: 251 LNV------QNAKAWNAFNLSCKI---------LLTT-RFKQVTDFLSAATTTHISLDHH 294
Query: 169 KPEYTE-ENLDLVQKGCVNLEKHVSNGL----KFGVPVVVKGKREFSIIQRRRLLRLDIN 223
T E L+ K ++ L P + SII +R +
Sbjct: 295 SMTLTPDEVKSLLLK-YLDCRP---QDLPREVLTTNPRRL------SIIA--ESIRDGLA 342
Query: 224 RTDP-----------------NTLTPEEITK-FVRLNINPDTISWRRVGQSPTEKNMERS 265
D N L P E K F RL++ P
Sbjct: 343 TWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPP------------------- 383
Query: 266 TGFDISVASEVMAAL---ALSKNLEDLYNRL-SRMMVAEDKEGRPVTLDDL-------AA 314
+ + +++ + + ++ + N+L +V + + +++ +
Sbjct: 384 ---SAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLE 440
Query: 315 KQAGAHDAVV 324
+ H ++V
Sbjct: 441 NEYALHRSIV 450
Score = 38.7 bits (89), Expect = 0.003
Identities = 28/203 (13%), Positives = 58/203 (28%), Gaps = 58/203 (28%)
Query: 171 EYTEENLDLVQKGCVNLE--------KHVSNGLKFGVPVVVKGKREFSII-------QRR 215
E+ + D++ V + K V + K ++ K E I
Sbjct: 13 EHQYQYKDILS---VFEDAFVDNFDCKDVQDMPK---SIL--SKEEIDHIIMSKDAVSGT 64
Query: 216 RLLRLDINRTDPNTLTPEEITKFVRLNINPDTISW--RRVGQSPTEKNMERSTGFDISVA 273
L + E + KFV + + + + + +M
Sbjct: 65 LRL-FWTLLSKQE----EMVQKFVEEVLRIN-YKFLMSPIKTEQRQPSMMTRM------- 111
Query: 274 SEVMAALALSKNLEDLYN---RLSRMMVAEDKEGRPVTLDDL--AAKQAGAHDAVVCENW 328
+ + LYN ++ V+ R L A + V+ +
Sbjct: 112 --------YIEQRDRLYNDNQVFAKYNVS-----RLQPYLKLRQALLELRPAKNVLID-- 156
Query: 329 AKGGAGAADLADAVIKATELKDK 351
G+G +A V + +++ K
Sbjct: 157 GVLGSGKTWVALDVCLSYKVQCK 179
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 47.4 bits (112), Expect = 5e-06
Identities = 56/355 (15%), Positives = 109/355 (30%), Gaps = 103/355 (29%)
Query: 15 IGLAQ----ALAAHKHKNTFACVRQPSQGPTFGIKGSHMALLLSGLTGAMAVLLKDAVQP 70
IG+ Q + A T +R +G T H L++ + A +
Sbjct: 241 IGVIQLAHYVVTAKLLGFTPGELRSYLKGAT-----GHSQGLVTAVAIAETDSWESFFV- 294
Query: 71 NLMQTLEGTPVMVHAGPFANIAHGCSSVVADLIALKLVGAEGY-----VVTEAGFG-SDI 124
++ + + V+ G A+ +S+ ++ L EG ++ +
Sbjct: 295 SVRKAIT---VLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSIS----NLTQE 347
Query: 125 GMEKF---FNIKCRTSGKIPDAVVLVTTVRALKMHGGGPSVVSGQPLKPEYTEENLDLVQ 181
++ + N ++ + LV + L VVSG P L
Sbjct: 348 QVQDYVNKTNSHLPAGKQV--EISLVNGAKNL--------VVSGPP---------QSLY- 387
Query: 182 KG-CVNLEK-HVSNGLKFGVPVVVKGKREFSIIQRRRLLRLDINRTDPNTLTP------E 233
G + L K +GL + + FS +R+ L+ NR P +P
Sbjct: 388 -GLNLTLRKAKAPSGLD-------QSRIPFS--ERK--LKFS-NRFLPVA-SPFHSHLLV 433
Query: 234 EITKFVRLNINPDTISWRR------VGQSPTEKNMERSTGFDI--SVASEVM-------A 278
+ + ++ + +S+ V + ++ R I + ++
Sbjct: 434 PASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDL-RVLSGSISERIVDCIIRLPVKWET 492
Query: 279 ALALS------------KNLEDLYNRLS-----RMMVAEDKEGRPVTLDDLAAKQ 316
L L +R R++VA + P DD KQ
Sbjct: 493 TTQFKATHILDFGPGGASGLGVLTHRNKDGTGVRVIVAGTLDINPD--DDYGFKQ 545
Score = 38.9 bits (90), Expect = 0.003
Identities = 58/349 (16%), Positives = 109/349 (31%), Gaps = 110/349 (31%)
Query: 3 PTPLGEGKSTTTIGLAQAL--AAHKHKNTF-ACVRQPSQGPTFGIKGSHMALLLSGLTGA 59
P L G + + A A + + F + +P++G + + A L+ G
Sbjct: 8 PLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGY 67
Query: 60 MAVLLKDAVQPNLMQTLEGTPVMVHAGPF-------ANIAHGCSSVVADLIALKLVGAEG 112
++ L++ + Q L + F +I H ++ A L+
Sbjct: 68 VSSLVEPSKVGQFDQVLNL--CLTE---FENCYLEGNDI-H---ALAAKLLQE------- 111
Query: 113 YVVTEAGFGSDIGMEKFFN-IKC----RTSGKIPDAVV----LVTTVRALKMHGGGPSVV 163
+D + K IK R K P L V G +V
Sbjct: 112 ---------NDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGE-----GNAQLV 157
Query: 164 S---GQPLKPEYTEE--NL---------DLVQKGCVNLEKHVSNGLKFGVPVVVKGKREF 209
+ GQ +Y EE +L DL++ L + + L V +G
Sbjct: 158 AIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAE-KVFTQG---- 212
Query: 210 SIIQRRRLLRLDINR--TDPNTLTPEEITKFVRLNINPDTISW---------------RR 252
L+I +P+ ++ L P IS +
Sbjct: 213 ----------LNILEWLENPSNTPDKDY-----LLSIP--ISCPLIGVIQLAHYVVTAKL 255
Query: 253 VGQSPTE--KNMERSTGF--DISVASEVMAALALSKNLEDLYNRLSRMM 297
+G +P E ++ +TG + A A+A + + E + + + +
Sbjct: 256 LGFTPGELRSYLKGATGHSQGLVTA----VAIAETDSWESFFVSVRKAI 300
Score = 34.6 bits (79), Expect = 0.060
Identities = 45/238 (18%), Positives = 70/238 (29%), Gaps = 114/238 (47%)
Query: 209 FSIIQRRRLLRLDINRTDPNTLT-----------------------------PEEITKFV 239
FSI LDI +P LT E+I F
Sbjct: 1659 FSI--------LDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKI--FK 1708
Query: 240 RLNINPDTISWRRVGQSPTEK-----N-------ME-------RSTGF---DISVA--S- 274
+N + + ++R S ME +S G D + A S
Sbjct: 1709 EINEHSTSYTFR----SEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSL 1764
Query: 275 -EVMAALA-----LSKNLED----LYNR--LSRMMVAEDKEGR---------P----VTL 309
E AALA +S +E ++ R ++ V D+ GR P +
Sbjct: 1765 GEY-AALASLADVMS--IESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASF 1821
Query: 310 DDLA----AKQAGAHDAVVCE----NWAKGG----AG---AADLADAVIKATELKDKQ 352
A ++ G + E N + AG A D V+ +K ++
Sbjct: 1822 SQEALQYVVERVGKRTGWLVEIVNYN-VENQQYVAAGDLRALDTVTNVLN--FIKLQK 1876
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase;
chimerical protein, P-loop protein, capsule
biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus
aureus} PDB: 2ved_A*
Length = 271
Score = 35.7 bits (83), Expect = 0.014
Identities = 20/81 (24%), Positives = 32/81 (39%), Gaps = 16/81 (19%)
Query: 1 IT-PTPLGEGKSTTTIGLAQALAAHKHKNTFACV-------RQPSQGPTFGIKGSH-MAL 51
IT P G GKST LA A A +K R+P+Q F + + ++
Sbjct: 87 ITSEAP-GAGKSTIAANLAVAYAQAGYK-----TLIVDGDMRKPTQHYIFNLPNNEGLSS 140
Query: 52 LLSGLTGAMAVLLKDAVQPNL 72
LL + ++ + +L
Sbjct: 141 LLLNWSTYQDSIISTEI-EDL 160
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding
domain, walker A motif, B protein kinase,
oligomerization; HET: ADP; 3.20A {Escherichia coli}
Length = 286
Score = 35.4 bits (82), Expect = 0.022
Identities = 10/81 (12%), Positives = 23/81 (28%), Gaps = 16/81 (19%)
Query: 1 IT-PTPLGEGKSTTTIGLAQALAAHKHKNTFACV-------RQPSQGPTFGIKGSH-MAL 51
+T +P G + LA ++ + V R+ G + ++
Sbjct: 97 MTGVSP-SIGMTFVCANLAAVISQTNKR-----VLLIDCDMRKGYTHELLGTNNVNGLSE 150
Query: 52 LLSGLTGAMAVLLKDAVQPNL 72
+L G ++
Sbjct: 151 ILIGQGDITTAAKPTSI-AKF 170
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine
kinase domain, signaling protein, transferase, inner
membrane, membrane; 2.50A {Escherichia coli}
Length = 299
Score = 35.0 bits (81), Expect = 0.029
Identities = 17/81 (20%), Positives = 26/81 (32%), Gaps = 16/81 (19%)
Query: 1 IT-PTPLGEGKSTTTIGLAQALAAHKHKNTFACV-------RQPSQGPTFGIKGSH-MAL 51
IT TP GK+ + LA +A K V R+ F + H ++
Sbjct: 109 ITGATP-DSGKTFVSSTLAAVIAQSDQK-----VLFIDADLRRGYSHNLFTVSNEHGLSE 162
Query: 52 LLSGLTGAMAVLLKDAVQPNL 72
L+G V+
Sbjct: 163 YLAGKDELNKVIQHFGK-GGF 182
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 32.8 bits (74), Expect = 0.091
Identities = 18/86 (20%), Positives = 27/86 (31%), Gaps = 22/86 (25%)
Query: 222 INRTDPNTLTPEEITKFVRLNINPDTISWRRVGQSPTEKNMERSTGFDISVASEVMAALA 281
I + D T PE I K WR E+ +R D + + +
Sbjct: 74 IAQADRLTQEPESIRK------------WR-------EEQRKRLQELD-AASKVMEQEWR 113
Query: 282 LS--KNLEDLYNRLSRMMVAEDKEGR 305
K+LE+ R S + R
Sbjct: 114 EKAKKDLEEWNQRQSEQVEKNKINNR 139
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA
bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB:
3ez6_A* 3ez7_A
Length = 398
Score = 33.6 bits (77), Expect = 0.097
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 7 GEGKSTTTIGLAQALAAHKH 26
G K+ +T+ LA A+ AH H
Sbjct: 119 GVSKTVSTVSLAHAMRAHPH 138
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A
{Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Length = 286
Score = 32.8 bits (75), Expect = 0.13
Identities = 9/21 (42%), Positives = 10/21 (47%)
Query: 7 GEGKSTTTIGLAQALAAHKHK 27
G GKST + L AL K
Sbjct: 15 GAGKSTIAVHLVTALLYGGAK 35
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein;
2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Length = 403
Score = 32.0 bits (73), Expect = 0.24
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 7 GEGKSTTTIGLAQALAAHKH 26
G K+ +T+ LA AL H+
Sbjct: 122 GVSKTVSTVTLAHALRVHQD 141
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome
segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A*
2bek_A*
Length = 257
Score = 31.7 bits (73), Expect = 0.27
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 7 GEGKSTTTIGLAQALAAHKHK 27
G GK+TT I LA LA +
Sbjct: 17 GVGKTTTAINLAAYLARLGKR 37
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA
segregation, unknown function; HET: ADP; 1.80A
{Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Length = 206
Score = 30.8 bits (70), Expect = 0.42
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 7 GEGKSTTTIGLAQALAAHKHK 27
G GK+T I +A AL+ +
Sbjct: 12 GSGKTTAVINIATALSRSGYN 32
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint
center for structural genomics, JCSG, protein structu
initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium
rectale}
Length = 373
Score = 31.4 bits (71), Expect = 0.44
Identities = 8/21 (38%), Positives = 8/21 (38%)
Query: 7 GEGKSTTTIGLAQALAAHKHK 27
G G ST A A A K
Sbjct: 154 GVGTSTVAAACAIAHANMGKK 174
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035,
plasmid, DNA binding protein; HET: AGS EPE; 1.83A
{Streptococcus pyogenes}
Length = 298
Score = 30.7 bits (70), Expect = 0.68
Identities = 6/21 (28%), Positives = 7/21 (33%)
Query: 7 GEGKSTTTIGLAQALAAHKHK 27
G GKS + A K
Sbjct: 47 GVGKSKLSTMFAYLTDKLNLK 67
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology,
protein structure initiati northeast structural
genomics consortium, NESG; 3.30A {Corynebacterium
diphtheriae}
Length = 361
Score = 30.2 bits (68), Expect = 1.1
Identities = 5/19 (26%), Positives = 9/19 (47%)
Query: 9 GKSTTTIGLAQALAAHKHK 27
GK+T + +A A +
Sbjct: 14 GKTTLSTNVAHYFALQGKR 32
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH,
niaid, borellia burgdorferi, plasmid partition protein,
iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Length = 267
Score = 29.9 bits (68), Expect = 1.2
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 7 GEGKSTTTIGLAQALAAHK 25
G GKST+ I LA L+ +
Sbjct: 38 GVGKSTSAIILATLLSKNN 56
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein,
structural genomics, PSI-2, protein STRU initiative;
HET: ADP; 2.47A {Synechocystis SP}
Length = 209
Score = 29.3 bits (66), Expect = 1.3
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 7 GEGKSTTTIGLAQALAAHKH 26
G GK+TT + L+ LA
Sbjct: 11 GVGKTTTAVHLSAYLALQGE 30
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered,
protein-ADP complex, cell cycle, hydrolase; HET: ADP;
2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB:
1g3r_A* 1ion_A*
Length = 237
Score = 29.4 bits (67), Expect = 1.5
Identities = 9/21 (42%), Positives = 11/21 (52%)
Query: 7 GEGKSTTTIGLAQALAAHKHK 27
G GK+T T L+ AL K
Sbjct: 13 GTGKTTVTANLSVALGDRGRK 33
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural
genomics, PSI-2, protein STRU initiative; 2.70A
{Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Length = 262
Score = 28.7 bits (65), Expect = 2.7
Identities = 10/21 (47%), Positives = 10/21 (47%)
Query: 7 GEGKSTTTIGLAQALAAHKHK 27
G GKST T LA A K
Sbjct: 29 GVGKSTVTALLAVHYARQGKK 49
>4ecq_A DNA polymerase ETA; transferase-DNA complex; HET: DNA DTP; 1.50A
{Homo sapiens} PDB: 3mr2_A* 3mr4_A* 3mr5_A* 3si8_A*
4dl2_A* 4dl3_A* 4dl4_A* 4dl5_A* 4dl6_A* 4dl7_A* 3mr3_A*
4ecr_A* 4ecs_A* 4ect_A* 4ecu_A* 4ecv_A* 4ecw_A* 4ecx_A*
4ecy_A* 4ecz_A* ...
Length = 435
Score = 28.4 bits (63), Expect = 4.1
Identities = 9/64 (14%), Positives = 23/64 (35%), Gaps = 2/64 (3%)
Query: 248 ISWRRVGQSPTEKNM--ERSTGFDISVASEVMAALALSKNLEDLYNRLSRMMVAEDKEGR 305
I V K + ++ ++A+ L + ++L RL++ D+
Sbjct: 308 IEHDPVKPRQLPKTIGCSKNFPGKTALATREQVQWWLLQLAQELEERLTKDRNDNDRVAT 367
Query: 306 PVTL 309
+ +
Sbjct: 368 QLVV 371
>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain,
vegfr-2, growth factor receptor, VEGF LI
hormone-signaling protein complex, angiogenesis; 3.20A
{Homo sapiens} PDB: 3v6b_R
Length = 772
Score = 28.2 bits (62), Expect = 5.4
Identities = 10/74 (13%), Positives = 21/74 (28%)
Query: 245 PDTISWRRVGQSPTEKNMERSTGFDISVASEVMAALALSKNLEDLYNRLSRMMVAEDKEG 304
P I W + ++ E ++ + + ++ + E K
Sbjct: 453 PHHIHWYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGNKIEVNKNQFALIEGKNK 512
Query: 305 RPVTLDDLAAKQAG 318
TL AA +
Sbjct: 513 TVSTLVIQAANVSA 526
>3i3k_A Lanosterol 14-alpha demethylase; cytochrome P450, hemeprotein,
alternative splicing, cholesterol biosynthesis,
endoplasmic reticulum, heme, iron; HET: HEM KLN BCD;
2.80A {Homo sapiens} PDB: 3jus_A* 3juv_A* 3ld6_A*
Length = 461
Score = 27.6 bits (62), Expect = 6.2
Identities = 10/27 (37%), Positives = 18/27 (66%), Gaps = 3/27 (11%)
Query: 287 EDLYNRLSRMMVAEDKEGRPVTLDDLA 313
+D+ L ++ A K+GRP+T D++A
Sbjct: 231 DDI---LQTLLDATYKDGRPLTDDEVA 254
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial
cell division, cell cycle; 2.60A {Archaeoglobus
fulgidus} SCOP: c.37.1.10
Length = 263
Score = 27.5 bits (62), Expect = 6.8
Identities = 10/21 (47%), Positives = 11/21 (52%)
Query: 7 GEGKSTTTIGLAQALAAHKHK 27
G GK+T T L ALA H
Sbjct: 13 GTGKTTITANLGVALAQLGHD 33
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell
division inhibitor, MINC, MINE, cell hydrolase; HET:
ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Length = 260
Score = 27.2 bits (61), Expect = 6.8
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 7 GEGKSTTTIGLAQALAAHKHK 27
G GK+T++ +A LA K
Sbjct: 13 GVGKTTSSAAIATGLAQKGKK 33
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 103
Score = 26.1 bits (58), Expect = 8.3
Identities = 10/51 (19%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Query: 257 PTEKNMERSTGFD-ISVASEVMAALALSKNLEDLYNRLSRMMVAEDKEGRP 306
+K+ ++ GF + AL+ + L +R R+ +AE ++
Sbjct: 47 VRDKDTDKFKGFCYVEFDEVDSLKEALTYDGALLGDRSLRVDIAEGRKQDK 97
>3gw9_A Sterol 14alpha-demethylase; CYP51, cytochrome P450, heme,
oxidoreductase, monooxygenase, sterol biosynthesis,
lipids, endoplasmic reticulum; HET: HEM VNI; 1.87A
{Trypanosoma brucei} PDB: 3g1q_A* 3p99_A* 2wv2_A*
2x2n_A* 3khm_A* 3k1o_A* 3ksw_A* 2wx2_A* 2wuz_A* 3l4d_A*
Length = 450
Score = 27.2 bits (61), Expect = 9.2
Identities = 6/22 (27%), Positives = 14/22 (63%)
Query: 293 LSRMMVAEDKEGRPVTLDDLAA 314
LS ++ A ++G P++L ++
Sbjct: 235 LSGLLSAVYRDGTPMSLHEVCG 256
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein
COOC; Zn-bound dimer, nickel binding protein, ATPase;
1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A*
3kje_A 3kji_A*
Length = 254
Score = 27.0 bits (60), Expect = 9.7
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 7 GEGKSTTTIGLAQALAAHKHK 27
G GK+T GL + +A+ K
Sbjct: 10 GVGKTTVAAGLIKIMASDYDK 30
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal
alpha-beta the C-terminal all beta domain., structural
genomics; 2.00A {Nostoc SP}
Length = 374
Score = 27.2 bits (60), Expect = 10.0
Identities = 9/94 (9%), Positives = 27/94 (28%)
Query: 7 GEGKSTTTIGLAQALAAHKHKNTFACVRQPSQGPTFGIKGSHMALLLSGLTGAMAVLLKD 66
G ++ I A+ LA+ + A + +P + ++ +
Sbjct: 12 GVARTKIAIAAAKLLASQGKRVLLAGLAEPVLPLLLEQTLTPDPQQIAPNLEVVQFQSSV 71
Query: 67 AVQPNLMQTLEGTPVMVHAGPFANIAHGCSSVVA 100
++ N + + + + V+
Sbjct: 72 LLERNWEEVKKLEAQYLRTPIIKEVYGQELVVLP 105
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.133 0.383
Gapped
Lambda K H
0.267 0.0642 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,489,813
Number of extensions: 354075
Number of successful extensions: 1004
Number of sequences better than 10.0: 1
Number of HSP's gapped: 991
Number of HSP's successfully gapped: 51
Length of query: 353
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 258
Effective length of database: 4,049,298
Effective search space: 1044718884
Effective search space used: 1044718884
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.3 bits)