RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy7967
(353 letters)
>d1eg7a_ c.37.1.10 (A:) Formyltetrahydrofolate synthetase {Moorella
thermoacetica [TaxId: 1525]}
Length = 549
Score = 191 bits (486), Expect = 1e-56
Identities = 85/147 (57%), Positives = 108/147 (73%), Gaps = 11/147 (7%)
Query: 57 TGAMAVLLKDAVQPNLMQTLEGTPVMVHAGPFANIAHGCSSVVADLIALKLVGAEGYVVT 116
G+MA+L+KDA++PNL+QTLE TP +H GPFANIAHGC+S++A ALKL YVVT
Sbjct: 238 QGSMALLMKDAIKPNLVQTLENTPAFIHGGPFANIAHGCNSIIATKTALKLA---DYVVT 294
Query: 117 EAGFGSDIGMEKFFNIKCRTSGKIPDAVVLVTTVRALKMHGGGPSVVSGQPLKPEYTEEN 176
EAGFG+D+G EKF+++KCR +G PDA V+V TVRALKMHGG P K + EN
Sbjct: 295 EAGFGADLGAEKFYDVKCRYAGFKPDATVIVATVRALKMHGGVP--------KSDLATEN 346
Query: 177 LDLVQKGCVNLEKHVSNGLKFGVPVVV 203
L+ +++G NLEKH+ N KFGVP VV
Sbjct: 347 LEALREGFANLEKHIENIGKFGVPAVV 373
Score = 87.6 bits (217), Expect = 1e-19
Identities = 28/47 (59%), Positives = 34/47 (72%), Gaps = 1/47 (2%)
Query: 1 ITPTPLGEGKSTTTIGLAQALAAHKHKNTFACVRQPSQGPTFGIKGS 47
ITPTP GEGK+TT++GL AL A K C+R+PS GP+FGIKG
Sbjct: 59 ITPTPAGEGKTTTSVGLTDAL-ARLGKRVMVCLREPSLGPSFGIKGG 104
Score = 82.9 bits (205), Expect = 4e-18
Identities = 41/98 (41%), Positives = 53/98 (54%), Gaps = 13/98 (13%)
Query: 233 EEITKFVRLNINPDTISWRRV-------------GQSPTEKNMERSTGFDISVASEVMAA 279
+ + LNI+P TI+WRRV G + R TGFDISVASEVMA
Sbjct: 143 NHLQQGNVLNIDPRTITWRRVIDLNERALRNIVIGLGGKANGVPRETGFDISVASEVMAC 202
Query: 280 LALSKNLEDLYNRLSRMMVAEDKEGRPVTLDDLAAKQA 317
L L+ +L DL R SR +V +G+PVT DL A+ +
Sbjct: 203 LCLASDLMDLKERFSRKVVGYTYDGKPVTAGDLEAQGS 240
Score = 34.0 bits (78), Expect = 0.029
Identities = 14/43 (32%), Positives = 21/43 (48%)
Query: 311 DLAAKQAGAHDAVVCENWAKGGAGAADLADAVIKATELKDKQF 353
+L + A V +WAKGG G +LA V++ E + F
Sbjct: 387 NLLYELCAKAGAEVALSWAKGGEGGLELARKVLQTLESRPSNF 429
>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA
{Escherichia coli [TaxId: 562]}
Length = 279
Score = 39.2 bits (90), Expect = 4e-04
Identities = 18/233 (7%), Positives = 50/233 (21%), Gaps = 10/233 (4%)
Query: 7 GEGKSTTTIGLAQALAAHKHKNTFACVR-QPSQGPTFGIKGSHMALLLSGLTGAMAVLLK 65
G GK+T +A LA T +++ + +
Sbjct: 30 GVGKTTMAAAIAVRLADMGFDVHLTTSDPAAHLSMTLNGSLNNLQVSRIDPHEETERYRQ 89
Query: 66 DAVQPNLMQTLEGTPVMVHAGPFANIAHGCSSVVADLIALKLVGAEGYVVTEAGFGSDIG 125
++ + E ++ + + +++ G
Sbjct: 90 HVLETKGKELDEAGKRLL---EEDLRSPCTEEIAVFQAFSRVIREAGKRFVVMDTAPTGH 146
Query: 126 MEKFFNIKCRTSGKIPDAVVLVTTVRALKMHGGGPS------VVSGQPLKPEYTEENLDL 179
+ +I + M P V +
Sbjct: 147 TLLLLDATGAYHREIAKKMGEKGHFTTPMMLLQDPERTKVLLVTLPETTPVLEAANLQAD 206
Query: 180 VQKGCVNLEKHVSNGLKFGVPVVVKGKREFSIIQRRRLLRLDINRTDPNTLTP 232
+++ ++ + N R + + ++ + L P
Sbjct: 207 LERAGIHPWGWIINNSLSIADTRSPLLRMRAQQELPQIESVKRQHASRVALVP 259
>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon
Pyrococcus furiosus [TaxId: 2261]}
Length = 237
Score = 38.9 bits (89), Expect = 5e-04
Identities = 32/225 (14%), Positives = 65/225 (28%), Gaps = 12/225 (5%)
Query: 7 GEGKSTTTIGLAQALAAHKHKNTF--ACVRQPSQGPTFGIKGS--HMALLLSGLTGAMAV 62
G GK+T T L+ AL K + + G+ + +L+G
Sbjct: 13 GTGKTTVTANLSVALGDRGRKVLAVDGDLTMANLSLVLGVDDPDVTLHDVLAGEANVEDA 72
Query: 63 LLKDAVQPNLMQTLEGTPVMVHAGPFANIAHGCSSV--VADLIALKLVGAEGYVVTEAGF 120
+ + V + S+ D I + A
Sbjct: 73 IYMTQFDNVYVLPGAVDWEHVLKADPRKLPEVIKSLKDKFDFILIDCPAGLQLDAMSAML 132
Query: 121 GSDIGMEKFFNIKCRTSGKIPDAVVLVTTVRALKMHGGGPSVVSGQPLKPEYTEENLDLV 180
+ + + + +VL A+ S + + PE E+ +++
Sbjct: 133 SGEEALLVTNPEISCLTDTMKVGIVLKKAGLAILGFVLNRYGRSDRDIPPEAAEDVMEVP 192
Query: 181 QKGCVNLEKHVSNGLKFGVPVVV-----KGKREFSIIQRRRLLRL 220
+ + + G G+P V KG + F + + +L
Sbjct: 193 LLAVIPEDPAIREGTLEGIPAVKYKPESKGAKAFVKLA-EEIEKL 236
>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon
Archaeoglobus fulgidus [TaxId: 2234]}
Length = 232
Score = 38.2 bits (87), Expect = 8e-04
Identities = 28/202 (13%), Positives = 53/202 (26%), Gaps = 5/202 (2%)
Query: 7 GEGKSTTTIGLAQALAAHKHKNTF--ACVRQPSQGPTFG---IKGSHMALLLSGLTGAMA 61
G GK+T T L ALA H T A + + G + + +L A
Sbjct: 12 GTGKTTITANLGVALAQLGHDVTIVDADITMANLELILGMEGLPVTLQNVLAGEARIDEA 71
Query: 62 VLLKDAVQPNLMQTLEGTPVMVHAGPFANIAHGCSSVVADLIALKLVGAEGYVVTEAGFG 121
+ + + + + D++ L A
Sbjct: 72 IYVGPGGVKVVPAGVSLEGLRKANPEKLEDVLTQIMESTDILLLDAPAGLERSAVIAIAA 131
Query: 122 SDIGMEKFFNIKCRTSGKIPDAVVLVTTVRALKMHGGGPSVVSGQPLKPEYTEENLDLVQ 181
+ + + + +V + G + E L+
Sbjct: 132 AQELLLVVNPEISSITDGLKTKIVAERLGTKVLGVVVNRITTLGIEMAKNEIEAILEAKV 191
Query: 182 KGCVNLEKHVSNGLKFGVPVVV 203
G + + V +G PVV+
Sbjct: 192 IGLIPEDPEVRRAAAYGKPVVL 213
>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli
[TaxId: 562]}
Length = 224
Score = 34.7 bits (78), Expect = 0.011
Identities = 8/27 (29%), Positives = 13/27 (48%)
Query: 1 ITPTPLGEGKSTTTIGLAQALAAHKHK 27
+T T GK+ + L QA A ++
Sbjct: 6 VTGTDTEVGKTVASCALLQAAKAAGYR 32
>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA
{Escherichia coli [TaxId: 562]}
Length = 296
Score = 34.6 bits (78), Expect = 0.015
Identities = 10/60 (16%), Positives = 21/60 (35%), Gaps = 1/60 (1%)
Query: 7 GEGKSTTTIGLAQALAAHKHKNTFA-CVRQPSQGPTFGIKGSHMALLLSGLTGAMAVLLK 65
G GK++ + A LA + + G F + ++ + G A+ +
Sbjct: 18 GVGKTSISCATAIRLAEQGKRVLLVSTDPASNVGQVFSQTIGNTIQAIASVPGLSALEID 77
>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium
pasteurianum [TaxId: 1501]}
Length = 269
Score = 33.4 bits (75), Expect = 0.031
Identities = 10/21 (47%), Positives = 10/21 (47%)
Query: 7 GEGKSTTTIGLAQALAAHKHK 27
G GKSTTT L L A
Sbjct: 11 GIGKSTTTQNLTSGLHAMGKT 31
>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter
vinelandii [TaxId: 354]}
Length = 289
Score = 33.3 bits (75), Expect = 0.037
Identities = 12/21 (57%), Positives = 12/21 (57%)
Query: 7 GEGKSTTTIGLAQALAAHKHK 27
G GKSTTT L ALA K
Sbjct: 12 GIGKSTTTQNLVAALAEMGKK 32
>d1hn0a1 a.102.3.2 (A:235-618) Chondroitin ABC lyase I {Proteus
vulgaris [TaxId: 585]}
Length = 384
Score = 29.2 bits (65), Expect = 0.76
Identities = 22/144 (15%), Positives = 45/144 (31%), Gaps = 6/144 (4%)
Query: 194 GLKFGVPVVVKGKREFSIIQRRRLLRLDINRTDPNTLTPEEITK----FVRLNINPDTIS 249
+K +PV + +I++R + + N E I+K F LNI+ +
Sbjct: 8 NVKPQLPVTPENLAAIDLIRQRLINEFVGGEKETNLALEENISKLKSDFDALNIHTL--A 65
Query: 250 WRRVGQSPTEKNMERSTGFDISVASEVMAALALSKNLEDLYNRLSRMMVAEDKEGRPVTL 309
+ + ++ S+ L + + + A E P
Sbjct: 66 NGGTQGRHLITDKQIIIYQPENLNSQDKQLFDNYVILGNYTTLMFNISRAYVLEKDPTQK 125
Query: 310 DDLAAKQAGAHDAVVCENWAKGGA 333
L ++ + + KG A
Sbjct: 126 AQLKQMYLLMTKHLLDQGFVKGSA 149
>d2saka_ d.15.5.1 (A:) Staphylokinase {Staphylococcus aureus [TaxId:
1280]}
Length = 121
Score = 27.9 bits (62), Expect = 0.78
Identities = 12/66 (18%), Positives = 26/66 (39%), Gaps = 1/66 (1%)
Query: 220 LDINRTDPNTLTPEEITKFVRLNINPDTISWRRVGQSPTEKNMERSTGFDISVASEVMAA 279
++ TLT E+I +V ++ RV + +E T +D + E +
Sbjct: 30 VEFPIKPGTTLTKEKIEYYVEWALDATAYKEFRVVELDPSAKIE-VTYYDKNKKKEETKS 88
Query: 280 LALSKN 285
+++
Sbjct: 89 FPITEK 94
>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 208
Score = 28.1 bits (61), Expect = 1.3
Identities = 12/46 (26%), Positives = 16/46 (34%), Gaps = 2/46 (4%)
Query: 7 GEGKSTTTIGLAQALAAHKHKNTFACVRQPSQGPTFGIKGSHMALL 52
G GK T L+ A A A + P G + + AL
Sbjct: 10 GAGKRTLVEKLSGAFRAAGRS--VATLAFPRYGQSVAADIAAEALH 53
>d1rrza_ a.7.10.1 (A:) Glycogen synthesis protein GlgS {Escherichia
coli [TaxId: 562]}
Length = 66
Score = 26.1 bits (57), Expect = 1.6
Identities = 12/46 (26%), Positives = 17/46 (36%), Gaps = 4/46 (8%)
Query: 284 KNLEDLYNRLSRMMVAEDKEGRPVTLDDLAAKQAGAHDAVVCENWA 329
N + L +RM EGRPV + + H C +A
Sbjct: 9 NNFDFLARSFARM----HAEGRPVDILAVTGNMDEEHRTWFCARYA 50
>d1hq0a_ d.194.1.1 (A:) Type 1 cytotoxic necrotizing factor,
catalytic domain {Escherichia coli [TaxId: 562]}
Length = 295
Score = 26.4 bits (58), Expect = 5.3
Identities = 10/34 (29%), Positives = 20/34 (58%), Gaps = 4/34 (11%)
Query: 67 AVQPNLMQTLEGTPVMVHAGPFANIAHGCSSVVA 100
++ L + EG PV++ +G + GC+++VA
Sbjct: 123 GIKIALEEVQEGKPVIITSGNLS----GCTTIVA 152
>d1iwga5 d.225.1.1 (A:182-273) Multidrug efflux transporter AcrB
TolC docking domain; DN and DC subdomains {Escherichia
coli [TaxId: 562]}
Length = 92
Score = 25.0 bits (54), Expect = 6.5
Identities = 14/89 (15%), Positives = 34/89 (38%), Gaps = 8/89 (8%)
Query: 239 VRLNINPDT-----ISWRRVGQSPTEKNMERSTGFDISVASEVMAALALSKNLEDLYN-- 291
+R+ +NP+ ++ V + +N + + G L S +
Sbjct: 3 MRIWMNPNELNKFQLTPVDVITAIKAQNAQVAAGQLGGTPPVKGQQLNASIIAQTRLTST 62
Query: 292 -RLSRMMVAEDKEGRPVTLDDLAAKQAGA 319
++++ +++G V L D+A + G
Sbjct: 63 EEFGKILLKVNQDGSRVLLRDVAKIELGG 91
>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal
recognition particle receptor FtsY {Thermotoga maritima
[TaxId: 2336]}
Length = 213
Score = 25.9 bits (56), Expect = 7.7
Identities = 7/27 (25%), Positives = 10/27 (37%)
Query: 7 GEGKSTTTIGLAQALAAHKHKNTFACV 33
G GK+T+ LA+ A
Sbjct: 21 GTGKTTSCGKLAKMFVDEGKSVVLAAA 47
>d1n8ia_ c.1.13.1 (A:) Malate synthase G {Mycobacterium tuberculosis
[TaxId: 1773]}
Length = 726
Score = 26.1 bits (57), Expect = 7.7
Identities = 9/44 (20%), Positives = 14/44 (31%), Gaps = 3/44 (6%)
Query: 204 KGKREFSIIQRRRLLR---LDINRTDPNTLTPEEITKFVRLNIN 244
+ + +RR L I P+EI + V N
Sbjct: 559 VAAVQQGLAGKRRATIEQLLTIPLAKELAWAPDEIREEVDNNCQ 602
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.133 0.383
Gapped
Lambda K H
0.267 0.0602 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,260,318
Number of extensions: 58102
Number of successful extensions: 214
Number of sequences better than 10.0: 1
Number of HSP's gapped: 210
Number of HSP's successfully gapped: 20
Length of query: 353
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 267
Effective length of database: 1,226,816
Effective search space: 327559872
Effective search space used: 327559872
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.5 bits)