Query psy7968
Match_columns 91
No_of_seqs 155 out of 1016
Neff 8.5
Searched_HMMs 46136
Date Fri Aug 16 23:27:03 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7968.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7968hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd05497 Bromo_Brdt_I_like Brom 100.0 1.5E-32 3.3E-37 164.8 10.2 85 5-89 20-106 (107)
2 cd05505 Bromo_WSTF_like Bromod 100.0 3.2E-32 7E-37 160.8 9.4 82 6-87 16-97 (97)
3 cd05508 Bromo_RACK7 Bromodomai 100.0 4E-32 8.8E-37 160.9 9.3 83 5-87 17-99 (99)
4 cd05495 Bromo_cbp_like Bromodo 100.0 1.1E-31 2.3E-36 161.3 10.3 84 6-89 20-105 (108)
5 cd05496 Bromo_WDR9_II Bromodom 100.0 1.6E-31 3.4E-36 162.8 9.9 84 6-89 21-105 (119)
6 cd05507 Bromo_brd8_like Bromod 100.0 1.7E-31 3.7E-36 159.5 9.9 86 5-90 18-103 (104)
7 cd05503 Bromo_BAZ2A_B_like Bro 100.0 1.6E-31 3.5E-36 157.9 9.6 82 6-87 16-97 (97)
8 cd05509 Bromo_gcn5_like Bromod 100.0 5.1E-31 1.1E-35 156.6 9.9 85 6-90 17-101 (101)
9 cd05499 Bromo_BDF1_2_II Bromod 100.0 7E-31 1.5E-35 156.3 10.0 83 5-87 18-102 (102)
10 cd05504 Bromo_Acf1_like Bromod 100.0 6.4E-31 1.4E-35 159.5 9.9 85 6-90 28-112 (115)
11 cd05510 Bromo_SPT7_like Bromod 100.0 5.7E-31 1.2E-35 159.0 9.5 85 6-90 24-109 (112)
12 cd05520 Bromo_polybromo_III Br 100.0 1.8E-30 3.9E-35 154.9 9.6 83 4-86 20-102 (103)
13 cd05516 Bromo_SNF2L2 Bromodoma 100.0 1.8E-30 3.8E-35 155.8 9.3 84 5-88 22-105 (107)
14 cd05498 Bromo_Brdt_II_like Bro 100.0 5.8E-30 1.3E-34 152.3 10.1 83 5-87 18-102 (102)
15 cd05506 Bromo_plant1 Bromodoma 100.0 7.5E-30 1.6E-34 151.1 9.9 82 6-87 16-99 (99)
16 cd05515 Bromo_polybromo_V Brom 100.0 6.9E-30 1.5E-34 152.8 9.8 85 4-88 20-104 (105)
17 cd05511 Bromo_TFIID Bromodomai 100.0 7.1E-30 1.5E-34 154.3 9.9 85 6-90 16-100 (112)
18 cd05513 Bromo_brd7_like Bromod 100.0 8.5E-30 1.8E-34 150.7 9.3 81 5-85 16-96 (98)
19 cd05518 Bromo_polybromo_IV Bro 100.0 7.4E-30 1.6E-34 152.2 9.2 83 4-86 20-102 (103)
20 cd05525 Bromo_ASH1 Bromodomain 100.0 8.2E-30 1.8E-34 152.7 9.3 83 4-86 22-104 (106)
21 cd05500 Bromo_BDF1_2_I Bromodo 100.0 1.4E-29 2.9E-34 151.1 9.8 82 6-87 20-103 (103)
22 cd05519 Bromo_SNF2 Bromodomain 100.0 1.1E-29 2.4E-34 151.4 9.3 84 4-87 20-103 (103)
23 cd05502 Bromo_tif1_like Bromod 100.0 1.9E-29 4.1E-34 151.7 10.3 83 6-89 20-105 (109)
24 cd05501 Bromo_SP100C_like Brom 100.0 2.5E-29 5.4E-34 149.3 10.3 81 6-89 18-98 (102)
25 cd05512 Bromo_brd1_like Bromod 100.0 1.5E-29 3.3E-34 149.6 9.2 79 5-83 16-94 (98)
26 cd05517 Bromo_polybromo_II Bro 100.0 1.8E-29 3.9E-34 150.5 9.2 83 3-85 19-101 (103)
27 cd05524 Bromo_polybromo_I Brom 100.0 1.9E-29 4.2E-34 152.6 9.4 85 5-89 23-107 (113)
28 cd05528 Bromo_AAA Bromodomain; 100.0 3.9E-29 8.4E-34 151.0 9.9 84 6-89 19-106 (112)
29 cd05529 Bromo_WDR9_I_like Brom 100.0 4.6E-29 1E-33 153.8 10.4 87 4-90 41-128 (128)
30 cd05522 Bromo_Rsc1_2_II Bromod 100.0 1.8E-28 3.8E-33 146.5 9.0 82 5-86 22-103 (104)
31 KOG1474|consensus 100.0 1.2E-28 2.5E-33 183.2 9.2 84 6-89 238-323 (640)
32 smart00297 BROMO bromo domain. 100.0 4.4E-28 9.6E-33 144.6 9.9 84 6-89 23-106 (107)
33 cd05521 Bromo_Rsc1_2_I Bromodo 99.9 2.3E-27 5E-32 142.0 9.0 82 5-88 22-103 (106)
34 cd04369 Bromodomain Bromodomai 99.9 1.3E-26 2.9E-31 135.1 8.8 82 6-87 18-99 (99)
35 cd05492 Bromo_ZMYND11 Bromodom 99.9 2.3E-26 5.1E-31 138.1 9.5 83 6-88 17-104 (109)
36 PF00439 Bromodomain: Bromodom 99.9 1.3E-25 2.9E-30 128.7 8.4 73 6-78 12-84 (84)
37 COG5076 Transcription factor i 99.9 2.4E-23 5.2E-28 146.9 7.8 88 2-89 160-247 (371)
38 cd05526 Bromo_polybromo_VI Bro 99.9 2.2E-22 4.7E-27 120.8 8.3 83 4-88 23-105 (110)
39 KOG1245|consensus 99.9 9.1E-22 2E-26 154.8 6.7 82 6-88 1317-1398(1404)
40 KOG1472|consensus 99.7 6.5E-18 1.4E-22 126.0 4.6 84 5-88 621-704 (720)
41 cd05491 Bromo_TBP7_like Bromod 99.6 1.5E-14 3.3E-19 87.5 6.8 42 28-69 62-103 (119)
42 KOG0955|consensus 99.4 5E-13 1.1E-17 103.5 5.5 81 9-89 584-664 (1051)
43 KOG1827|consensus 99.4 8.7E-13 1.9E-17 97.7 6.2 84 4-87 72-155 (629)
44 cd05494 Bromodomain_1 Bromodom 99.4 2.6E-13 5.7E-18 82.2 2.3 62 6-67 19-89 (114)
45 KOG0008|consensus 99.4 5.1E-13 1.1E-17 104.4 4.0 82 6-87 1398-1479(1563)
46 KOG1472|consensus 99.3 5.2E-12 1.1E-16 94.8 5.0 67 6-72 302-368 (720)
47 KOG0386|consensus 99.3 7.2E-12 1.6E-16 96.3 5.1 85 4-88 1044-1128(1157)
48 KOG0008|consensus 99.2 3.7E-11 8E-16 94.3 6.2 79 6-84 1277-1355(1563)
49 KOG1828|consensus 98.8 5.7E-10 1.2E-14 78.8 -1.4 76 8-83 37-112 (418)
50 KOG1474|consensus 98.7 6.3E-09 1.4E-13 78.3 1.5 83 5-87 7-91 (640)
51 KOG1828|consensus 98.4 1.3E-07 2.8E-12 67.1 2.1 71 10-81 228-298 (418)
52 cd05493 Bromo_ALL-1 Bromodomai 98.1 1.1E-05 2.3E-10 50.0 5.3 59 30-88 59-117 (131)
53 COG5076 Transcription factor i 98.1 1.4E-06 3.1E-11 61.9 1.1 84 5-88 278-361 (371)
54 KOG0644|consensus 97.5 9.6E-05 2.1E-09 57.3 3.7 65 23-87 1046-1110(1113)
55 KOG0732|consensus 94.9 0.017 3.6E-07 46.4 2.0 63 7-69 532-601 (1080)
56 KOG0644|consensus 91.4 0.073 1.6E-06 42.0 0.6 72 10-82 85-186 (1113)
57 TIGR02606 antidote_CC2985 puta 91.0 0.65 1.4E-05 25.5 4.0 28 34-61 12-39 (69)
58 PF14372 DUF4413: Domain of un 89.6 2.8 6E-05 24.5 6.2 48 43-90 4-51 (101)
59 PF03693 RHH_2: Uncharacterise 87.0 1.3 2.8E-05 25.0 3.5 27 34-60 15-41 (80)
60 KOG1827|consensus 85.6 0.071 1.5E-06 40.7 -2.8 74 8-81 213-286 (629)
61 PF08134 cIII: cIII protein fa 77.7 4.4 9.6E-05 20.0 2.8 27 64-90 14-41 (44)
62 PRK10991 fucI L-fucose isomera 64.6 15 0.00033 28.3 4.4 48 16-64 191-238 (588)
63 PF07882 Fucose_iso_N2: L-fuco 63.5 4.3 9.4E-05 26.5 1.2 50 19-69 22-71 (181)
64 PF14056 DUF4250: Domain of un 61.4 16 0.00034 19.3 3.0 24 31-55 7-30 (55)
65 COG3609 Predicted transcriptio 59.6 26 0.00057 20.0 4.0 29 33-61 14-42 (89)
66 PF10491 Nrf1_DNA-bind: NLS-bi 55.3 20 0.00042 24.1 3.2 21 49-69 185-205 (214)
67 KOG0732|consensus 54.5 4.7 0.0001 33.1 0.3 59 11-69 789-849 (1080)
68 TIGR01089 fucI L-fucose isomer 38.5 61 0.0013 25.2 4.0 48 16-64 190-237 (587)
69 KOG3740|consensus 38.3 27 0.00058 27.3 2.1 36 53-88 484-519 (706)
70 PF04282 DUF438: Family of unk 36.9 65 0.0014 17.8 3.0 28 33-62 2-29 (71)
71 cd03556 L-fucose_isomerase L-f 36.5 53 0.0012 25.4 3.4 47 16-63 187-233 (584)
72 KOG0506|consensus 34.2 1.4E+02 0.0029 23.1 5.1 38 32-69 159-197 (622)
73 PRK03972 ribosomal biogenesis 32.4 30 0.00064 23.2 1.4 30 47-76 13-42 (208)
74 PF14225 MOR2-PAG1_C: Cell mor 31.8 1.3E+02 0.0028 20.8 4.5 33 31-63 149-181 (262)
75 COG3355 Predicted transcriptio 30.1 85 0.0018 19.4 3.0 37 23-63 83-119 (126)
76 KOG4086|consensus 29.8 21 0.00047 21.9 0.4 18 20-37 59-76 (130)
77 PF04316 FlgM: Anti-sigma-28 f 29.7 44 0.00095 17.3 1.6 19 33-51 30-49 (57)
78 PRK00630 nickel responsive reg 28.3 97 0.0021 19.6 3.2 25 33-57 22-46 (148)
79 PF02901 PFL: Pyruvate formate 28.1 2.1E+02 0.0045 22.5 5.5 56 29-89 570-625 (648)
80 PF14237 DUF4339: Domain of un 25.2 91 0.002 15.1 2.2 19 28-46 11-29 (45)
81 PF12146 Hydrolase_4: Putative 24.9 73 0.0016 17.5 2.0 16 44-59 63-78 (79)
82 PF11860 DUF3380: Protein of u 24.1 79 0.0017 20.6 2.3 43 43-85 104-173 (175)
83 PF10742 DUF2555: Protein of u 24.0 1.3E+02 0.0028 16.0 3.4 32 32-63 13-44 (57)
84 PF14579 HHH_6: Helix-hairpin- 23.9 1.1E+02 0.0024 17.2 2.6 21 34-55 42-62 (90)
85 KOG1212|consensus 23.7 1.8E+02 0.0039 22.6 4.3 57 30-86 54-110 (560)
86 cd08767 Cdt1_c The C-terminal 23.5 44 0.00096 20.3 1.0 19 22-41 108-126 (126)
87 KOG2972|consensus 23.4 49 0.0011 23.0 1.2 24 24-47 207-230 (276)
88 KOG2781|consensus 22.5 55 0.0012 22.8 1.3 29 46-74 95-123 (290)
89 PF15469 Sec5: Exocyst complex 22.2 1.9E+02 0.0042 18.2 3.8 30 34-63 91-120 (182)
90 PF05402 PqqD: Coenzyme PQQ sy 22.1 1.3E+02 0.0029 15.5 4.3 39 25-63 24-62 (68)
91 TIGR03824 FlgM_jcvi flagellar 20.7 1.8E+02 0.0039 16.5 3.3 19 35-53 70-89 (95)
92 PF09494 Slx4: Slx4 endonuclea 20.6 1.5E+02 0.0033 15.6 3.0 23 21-43 13-37 (64)
93 PF14544 DUF4443: Domain of un 20.4 26 0.00056 21.1 -0.5 29 11-39 1-31 (108)
No 1
>cd05497 Bromo_Brdt_I_like Bromodomain, Brdt_like subfamily, repeat I. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=100.00 E-value=1.5e-32 Score=164.75 Aligned_cols=85 Identities=31% Similarity=0.468 Sum_probs=81.4
Q ss_pred CCCCCcCCCCCCCC--CCcchhhhcCCcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHH
Q psy7968 5 AGEETASSATFSVE--PVPDYHRIIGKPMDFGTIKHKLNMFQYRNNSEVLFDCNLVFDNCFAYNKEDSEIYEPTIKLNTF 82 (91)
Q Consensus 5 ~~~~~~F~~pv~~~--~~p~Y~~~I~~PmdL~~I~~rl~~~~Y~s~~~f~~D~~li~~Na~~yn~~~s~~~~~a~~l~~~ 82 (91)
...+.||..||++. ++|||+++|++||||++|++||++|.|.++++|.+||++||.||..||+++|.++.+|..|++.
T Consensus 20 ~~~s~~F~~PVd~~~~~~pdY~~iIk~PmDL~tI~~kL~~~~Y~s~~ef~~D~~li~~Na~~yN~~~s~i~~~A~~l~~~ 99 (107)
T cd05497 20 HKFAWPFQQPVDAVKLNLPDYHKIIKTPMDLGTIKKRLENNYYWSASECIQDFNTMFTNCYIYNKPGDDVVLMAQTLEKL 99 (107)
T ss_pred CCcCccccCCCCcccccCCcHHHHHcCcccHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 35789999999976 7999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhh
Q psy7968 83 LSCLCHL 89 (91)
Q Consensus 83 fe~~~~~ 89 (91)
|++.++.
T Consensus 100 f~~~l~~ 106 (107)
T cd05497 100 FLQKLAQ 106 (107)
T ss_pred HHHHHHc
Confidence 9999874
No 2
>cd05505 Bromo_WSTF_like Bromodomain; Williams syndrome transcription factor-like subfamily (WSTF-like). The Williams-Beuren syndrome deletion transcript 9 is a putative transcriptional regulator. WSTF was found to play a role in vitamin D-mediated transcription as part of two chromatin remodeling complexes, WINAC and WICH. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.98 E-value=3.2e-32 Score=160.83 Aligned_cols=82 Identities=24% Similarity=0.288 Sum_probs=79.4
Q ss_pred CCCCcCCCCCCCCCCcchhhhcCCcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHH
Q psy7968 6 GEETASSATFSVEPVPDYHRIIGKPMDFGTIKHKLNMFQYRNNSEVLFDCNLVFDNCFAYNKEDSEIYEPTIKLNTFLSC 85 (91)
Q Consensus 6 ~~~~~F~~pv~~~~~p~Y~~~I~~PmdL~~I~~rl~~~~Y~s~~~f~~D~~li~~Na~~yn~~~s~~~~~a~~l~~~fe~ 85 (91)
+.|+||..||++.++|+|+++|++||||+||++||++|.|.|+++|.+||++||.||+.||+++|.++.+|..|++.|.+
T Consensus 16 ~~s~~F~~pv~~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~s~i~~~a~~le~~f~~ 95 (97)
T cd05505 16 RFSWPFREPVTADEAEDYKKVITNPMDLQTMQTKCSCGSYSSVQEFLDDMKLVFSNAEKYYENGSYVLSCMRKTEQCCVN 95 (97)
T ss_pred CCcccccCCCChhhcccHHHHcCCcCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred Hh
Q psy7968 86 LC 87 (91)
Q Consensus 86 ~~ 87 (91)
++
T Consensus 96 ~~ 97 (97)
T cd05505 96 LL 97 (97)
T ss_pred hC
Confidence 64
No 3
>cd05508 Bromo_RACK7 Bromodomain, RACK7_like subfamily. RACK7 (also called human protein kinase C-binding protein) was identified as a potential tumor suppressor genes, it shares domain architecture with BS69/ZMYND11; both have been implicated in the regulation of cellular proliferation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.98 E-value=4e-32 Score=160.87 Aligned_cols=83 Identities=19% Similarity=0.323 Sum_probs=79.6
Q ss_pred CCCCCcCCCCCCCCCCcchhhhcCCcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHH
Q psy7968 5 AGEETASSATFSVEPVPDYHRIIGKPMDFGTIKHKLNMFQYRNNSEVLFDCNLVFDNCFAYNKEDSEIYEPTIKLNTFLS 84 (91)
Q Consensus 5 ~~~~~~F~~pv~~~~~p~Y~~~I~~PmdL~~I~~rl~~~~Y~s~~~f~~D~~li~~Na~~yn~~~s~~~~~a~~l~~~fe 84 (91)
...++||..||++..+|||+++|++||||+||++||++|.|.++++|.+|+++||+||..||+++|.++.+|..|.+.++
T Consensus 17 ~~~s~~F~~PV~~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~LI~~Na~~YN~~~s~i~~~A~~l~~~~~ 96 (99)
T cd05508 17 QPGAEPFLKPVDLEQFPDYAQYVFKPMDLSTLEKNVRKKAYGSTDAFLADAKWILHNAIIYNGGDHKLTQAAKAIVKICE 96 (99)
T ss_pred CcCcchhcCCCChhhCCCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHh
Q psy7968 85 CLC 87 (91)
Q Consensus 85 ~~~ 87 (91)
..+
T Consensus 97 ~e~ 99 (99)
T cd05508 97 QEM 99 (99)
T ss_pred hhC
Confidence 653
No 4
>cd05495 Bromo_cbp_like Bromodomain, cbp_like subfamily. Cbp (CREB binding protein or CREBBP) is an acetyltransferase acting on histone, which gives a specific tag for transcriptional activation and also acetylates non-histone proteins. CREBBP binds specifically to phosphorylated CREB protein and augments the activity of phosphorylated CREB to activate transcription of cAMP-responsive genes. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.97 E-value=1.1e-31 Score=161.33 Aligned_cols=84 Identities=30% Similarity=0.471 Sum_probs=80.9
Q ss_pred CCCCcCCCCCCCC--CCcchhhhcCCcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHH
Q psy7968 6 GEETASSATFSVE--PVPDYHRIIGKPMDFGTIKHKLNMFQYRNNSEVLFDCNLVFDNCFAYNKEDSEIYEPTIKLNTFL 83 (91)
Q Consensus 6 ~~~~~F~~pv~~~--~~p~Y~~~I~~PmdL~~I~~rl~~~~Y~s~~~f~~D~~li~~Na~~yn~~~s~~~~~a~~l~~~f 83 (91)
..|+||..||++. ++|+|+++|++||||+||++||++|.|.++++|.+|+++||.||+.||+++|.++.+|.+|++.|
T Consensus 20 ~~s~~F~~PV~~~~~~~pdY~~iIk~PmDL~tI~~kL~~~~Y~s~~ef~~D~~li~~Na~~yN~~~s~i~~~a~~l~~~F 99 (108)
T cd05495 20 PESLPFRQPVDPKLLGIPDYFDIVKNPMDLSTIRRKLDTGQYQDPWQYVDDVWLMFDNAWLYNRKTSRVYKYCTKLAEVF 99 (108)
T ss_pred cccchhcCCCCccccCCCcHHHHhCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Confidence 6789999999887 79999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhh
Q psy7968 84 SCLCHL 89 (91)
Q Consensus 84 e~~~~~ 89 (91)
++.++.
T Consensus 100 ~~~~~~ 105 (108)
T cd05495 100 EQEIDP 105 (108)
T ss_pred HHHHHH
Confidence 999873
No 5
>cd05496 Bromo_WDR9_II Bromodomain; WDR9 repeat II_like subfamily. WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional regulator involved in chromatin remodeling and play a role in embryonic development. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.97 E-value=1.6e-31 Score=162.85 Aligned_cols=84 Identities=29% Similarity=0.444 Sum_probs=80.8
Q ss_pred CCCCcCCCCCCCCCCcchhhhcCCcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhcCC-CCHHHHHHHHHHHHHH
Q psy7968 6 GEETASSATFSVEPVPDYHRIIGKPMDFGTIKHKLNMFQYRNNSEVLFDCNLVFDNCFAYNKE-DSEIYEPTIKLNTFLS 84 (91)
Q Consensus 6 ~~~~~F~~pv~~~~~p~Y~~~I~~PmdL~~I~~rl~~~~Y~s~~~f~~D~~li~~Na~~yn~~-~s~~~~~a~~l~~~fe 84 (91)
..++||..||++..+|||+++|++||||+||++||.+|.|.++++|.+||++||.||+.||++ +|.++.+|..|++.|+
T Consensus 21 ~~s~~F~~PVd~~~~pdY~~iIk~PmDL~tIk~kL~~~~Y~~~~ef~~D~~lif~Na~~yN~~~~s~i~~~a~~L~~~F~ 100 (119)
T cd05496 21 EDSEPFRQPVDLLKYPDYRDIIDTPMDLGTVKETLFGGNYDDPMEFAKDVRLIFSNSKSYTPNKRSRIYSMTLRLSALFE 100 (119)
T ss_pred CccccccCCCChhhcCcHHHHhCCcccHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
Confidence 578999999999999999999999999999999999999999999999999999999999985 8999999999999999
Q ss_pred HHhhh
Q psy7968 85 CLCHL 89 (91)
Q Consensus 85 ~~~~~ 89 (91)
+.++.
T Consensus 101 ~~~~~ 105 (119)
T cd05496 101 EHIKK 105 (119)
T ss_pred HHHHH
Confidence 99874
No 6
>cd05507 Bromo_brd8_like Bromodomain, brd8_like subgroup. In mammals, brd8 (bromodomain containing 8) interacts with the thyroid hormone receptor in a ligand-dependent fashion and enhances thyroid hormone-dependent activation from thyroid response elements. Brd8 is thought to be a nuclear receptor coactivator. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.97 E-value=1.7e-31 Score=159.52 Aligned_cols=86 Identities=22% Similarity=0.368 Sum_probs=82.4
Q ss_pred CCCCCcCCCCCCCCCCcchhhhcCCcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHH
Q psy7968 5 AGEETASSATFSVEPVPDYHRIIGKPMDFGTIKHKLNMFQYRNNSEVLFDCNLVFDNCFAYNKEDSEIYEPTIKLNTFLS 84 (91)
Q Consensus 5 ~~~~~~F~~pv~~~~~p~Y~~~I~~PmdL~~I~~rl~~~~Y~s~~~f~~D~~li~~Na~~yn~~~s~~~~~a~~l~~~fe 84 (91)
.+.+.||..||++..+|+|+++|++||||+||++||++|.|.++++|.+|+++||+||..||+++|.++.+|..|++.+.
T Consensus 18 ~~~a~~F~~pV~~~~~p~Y~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~s~v~~~A~~l~~~~~ 97 (104)
T cd05507 18 HRYASVFLKPVTEDIAPGYHSVVYRPMDLSTIKKNIENGTIRSTAEFQRDVLLMFQNAIMYNSSDHDVYLMAVEMQREVM 97 (104)
T ss_pred CCCCHhhcCCCCccccCCHHHHhCCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhc
Q psy7968 85 CLCHLC 90 (91)
Q Consensus 85 ~~~~~~ 90 (91)
+.++.+
T Consensus 98 ~~~~~~ 103 (104)
T cd05507 98 SQIQQL 103 (104)
T ss_pred HHhhcc
Confidence 998754
No 7
>cd05503 Bromo_BAZ2A_B_like Bromodomain, BAZ2A/BAZ2B_like subfamily. Bromo adjacent to zinc finger 2A (BAZ2A) and 2B (BAZ2B) were identified as a novel human bromodomain gene by cDNA library screening. BAZ2A is also known as Tip5 (Transcription termination factor I-interacting protein 5) and hWALp3. The proteins may play roles in transcriptional regulation. Human Tip5 is part of a complex termed NoRC (nucleolar remodeling complex), which induces nucleosome sliding and may play a role in the regulation of the rDNA locus. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.97 E-value=1.6e-31 Score=157.85 Aligned_cols=82 Identities=35% Similarity=0.545 Sum_probs=79.8
Q ss_pred CCCCcCCCCCCCCCCcchhhhcCCcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHH
Q psy7968 6 GEETASSATFSVEPVPDYHRIIGKPMDFGTIKHKLNMFQYRNNSEVLFDCNLVFDNCFAYNKEDSEIYEPTIKLNTFLSC 85 (91)
Q Consensus 6 ~~~~~F~~pv~~~~~p~Y~~~I~~PmdL~~I~~rl~~~~Y~s~~~f~~D~~li~~Na~~yn~~~s~~~~~a~~l~~~fe~ 85 (91)
..+.||..||++..+|+|+++|++||||++|++||++|.|.|+++|.+||++||+||+.||+++|.++.+|..|++.|++
T Consensus 16 ~~~~~F~~pv~~~~~p~Y~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~s~i~~~a~~l~~~f~~ 95 (97)
T cd05503 16 EDAWPFLEPVNTKLVPGYRKIIKKPMDFSTIREKLESGQYKTLEEFAEDVRLVFDNCETFNEDDSEVGRAGHNMRKFFEK 95 (97)
T ss_pred CCchhhcCCCCccccCCHHHHhCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Confidence 56889999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred Hh
Q psy7968 86 LC 87 (91)
Q Consensus 86 ~~ 87 (91)
+|
T Consensus 96 ~~ 97 (97)
T cd05503 96 RW 97 (97)
T ss_pred hC
Confidence 86
No 8
>cd05509 Bromo_gcn5_like Bromodomain; Gcn5_like subfamily. Gcn5p is a histone acetyltransferase (HAT) which mediates acetylation of histones at lysine residues; such acetylation is generally correlated with the activation of transcription. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.97 E-value=5.1e-31 Score=156.61 Aligned_cols=85 Identities=33% Similarity=0.439 Sum_probs=82.2
Q ss_pred CCCCcCCCCCCCCCCcchhhhcCCcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHH
Q psy7968 6 GEETASSATFSVEPVPDYHRIIGKPMDFGTIKHKLNMFQYRNNSEVLFDCNLVFDNCFAYNKEDSEIYEPTIKLNTFLSC 85 (91)
Q Consensus 6 ~~~~~F~~pv~~~~~p~Y~~~I~~PmdL~~I~~rl~~~~Y~s~~~f~~D~~li~~Na~~yn~~~s~~~~~a~~l~~~fe~ 85 (91)
+.+.||..||++..+|+|+++|++||||++|++||.+|.|.|+++|.+||++||+||+.||+++|.++.+|..|++.|++
T Consensus 17 ~~a~~F~~pv~~~~~p~Y~~~I~~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~li~~Na~~yN~~~s~~~~~a~~l~~~f~~ 96 (101)
T cd05509 17 KSAWPFLEPVDKEEAPDYYDVIKKPMDLSTMEEKLENGYYVTLEEFVADLKLIFDNCRLYNGPDTEYYKCANKLEKFFWK 96 (101)
T ss_pred CCchhhcCCCChhhcCCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Confidence 56889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Hhhhc
Q psy7968 86 LCHLC 90 (91)
Q Consensus 86 ~~~~~ 90 (91)
.++.+
T Consensus 97 ~~~~~ 101 (101)
T cd05509 97 KLKEL 101 (101)
T ss_pred HHhhC
Confidence 99864
No 9
>cd05499 Bromo_BDF1_2_II Bromodomain. BDF1/BDF2 like subfamily, restricted to fungi, repeat II. BDF1 and BDF2 are yeast transcription factors involved in the expression of a wide range of genes, including snRNAs; they are required for sporulation and DNA repair and protect histone H4 from deacetylation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.97 E-value=7e-31 Score=156.32 Aligned_cols=83 Identities=30% Similarity=0.500 Sum_probs=80.4
Q ss_pred CCCCCcCCCCCCCC--CCcchhhhcCCcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHH
Q psy7968 5 AGEETASSATFSVE--PVPDYHRIIGKPMDFGTIKHKLNMFQYRNNSEVLFDCNLVFDNCFAYNKEDSEIYEPTIKLNTF 82 (91)
Q Consensus 5 ~~~~~~F~~pv~~~--~~p~Y~~~I~~PmdL~~I~~rl~~~~Y~s~~~f~~D~~li~~Na~~yn~~~s~~~~~a~~l~~~ 82 (91)
...+.||..||++. .+|+|+++|++||||++|++||++|.|.++++|.+|+++||.||+.||+++|.++.+|..|++.
T Consensus 18 ~~~s~~F~~pvd~~~~~~pdY~~~I~~P~dL~~I~~kl~~~~Y~s~~ef~~D~~li~~N~~~yn~~~s~~~~~a~~l~~~ 97 (102)
T cd05499 18 SAYNWPFLDPVDPVALNIPNYFSIIKKPMDLGTISKKLQNGQYQSAKEFERDVRLIFKNCYTFNPEGTDVYMMGHQLEEV 97 (102)
T ss_pred CcccchhcCCCCccccCCCCHHHHhcCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 46799999999988 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHh
Q psy7968 83 LSCLC 87 (91)
Q Consensus 83 fe~~~ 87 (91)
|++.|
T Consensus 98 fe~~~ 102 (102)
T cd05499 98 FNDKW 102 (102)
T ss_pred HHHhC
Confidence 99876
No 10
>cd05504 Bromo_Acf1_like Bromodomain; Acf1_like or BAZ1A_like subfamily. Bromo adjacent to zinc finger 1A (BAZ1A) was identified as a novel human bromodomain gene by cDNA library screening. The Drosophila homologue, Acf1, is part of the CHRAC (chromatin accessibility complex) and regulates ISWI-induced nucleosome remodeling. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.97 E-value=6.4e-31 Score=159.48 Aligned_cols=85 Identities=42% Similarity=0.654 Sum_probs=82.3
Q ss_pred CCCCcCCCCCCCCCCcchhhhcCCcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHH
Q psy7968 6 GEETASSATFSVEPVPDYHRIIGKPMDFGTIKHKLNMFQYRNNSEVLFDCNLVFDNCFAYNKEDSEIYEPTIKLNTFLSC 85 (91)
Q Consensus 6 ~~~~~F~~pv~~~~~p~Y~~~I~~PmdL~~I~~rl~~~~Y~s~~~f~~D~~li~~Na~~yn~~~s~~~~~a~~l~~~fe~ 85 (91)
..+.||..||+...+|+|+++|++||||++|++||++|.|.|+++|.+||++||.||+.||+++|.++.+|..|++.|++
T Consensus 28 ~~s~~F~~pvd~~~~pdY~~vI~~PmDL~tI~~kL~~~~Y~s~~~f~~Dv~LI~~Na~~yN~~~s~i~~~A~~l~~~f~~ 107 (115)
T cd05504 28 KDSWPFLRPVSKIEVPDYYDIIKKPMDLGTIKEKLNMGEYKLAEEFLSDIQLVFSNCFLYNPEHTSVYKAGTRLQRFFIK 107 (115)
T ss_pred CCchhhcCCCCccccccHHHHhcCcccHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Hhhhc
Q psy7968 86 LCHLC 90 (91)
Q Consensus 86 ~~~~~ 90 (91)
.++.+
T Consensus 108 ~~~~~ 112 (115)
T cd05504 108 RCRKL 112 (115)
T ss_pred HHHHh
Confidence 99854
No 11
>cd05510 Bromo_SPT7_like Bromodomain; SPT7_like subfamily. SPT7 is a yeast protein that functions as a component of the transcription regulatory histone acetylation (HAT) complexes SAGA, SALSA, and SLIK. SAGA is involved in the RNA polymerase II-dependent transcriptional regulation of about 10% of all yeast genes. The SPT7 bromodomain has been shown to weakly interact with acetylated histone H3, but not H4. The human representative of this subfamily is cat eye syndrome critical region protein 2 (CECR2). Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.97 E-value=5.7e-31 Score=158.97 Aligned_cols=85 Identities=33% Similarity=0.506 Sum_probs=80.6
Q ss_pred CCCCcCCCCCCCCCCcchhhhcCCcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhcCCCC-HHHHHHHHHHHHHH
Q psy7968 6 GEETASSATFSVEPVPDYHRIIGKPMDFGTIKHKLNMFQYRNNSEVLFDCNLVFDNCFAYNKEDS-EIYEPTIKLNTFLS 84 (91)
Q Consensus 6 ~~~~~F~~pv~~~~~p~Y~~~I~~PmdL~~I~~rl~~~~Y~s~~~f~~D~~li~~Na~~yn~~~s-~~~~~a~~l~~~fe 84 (91)
..+.||..||++.++|+|+++|++||||++|++||++|.|.|+++|.+|+++||+||+.||+++| .++.+|..|++.++
T Consensus 24 ~~s~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~Li~~N~~~yN~~~s~~~~~~A~~l~~~~~ 103 (112)
T cd05510 24 EHSTPFLTKVSKREAPDYYDIIKKPMDLGTMLKKLKNLQYKSKAEFVDDLNLIWKNCLLYNSDPSHPLRRHANFMKKKAE 103 (112)
T ss_pred ccccchhcCCChhhcCCHHHHhcCccCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Confidence 56899999999999999999999999999999999999999999999999999999999999765 67899999999999
Q ss_pred HHhhhc
Q psy7968 85 CLCHLC 90 (91)
Q Consensus 85 ~~~~~~ 90 (91)
+.++.+
T Consensus 104 ~~~~~~ 109 (112)
T cd05510 104 HLLKLI 109 (112)
T ss_pred HHHHHC
Confidence 998764
No 12
>cd05520 Bromo_polybromo_III Bromodomain, polybromo repeat III. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.97 E-value=1.8e-30 Score=154.85 Aligned_cols=83 Identities=28% Similarity=0.330 Sum_probs=79.9
Q ss_pred CCCCCCcCCCCCCCCCCcchhhhcCCcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHH
Q psy7968 4 FAGEETASSATFSVEPVPDYHRIIGKPMDFGTIKHKLNMFQYRNNSEVLFDCNLVFDNCFAYNKEDSEIYEPTIKLNTFL 83 (91)
Q Consensus 4 ~~~~~~~F~~pv~~~~~p~Y~~~I~~PmdL~~I~~rl~~~~Y~s~~~f~~D~~li~~Na~~yn~~~s~~~~~a~~l~~~f 83 (91)
.+..+.||..+|+...+|+||++|++||||++|++||++|.|.++++|.+||++||.||+.||+++|.++.+|..|++.|
T Consensus 20 g~~~s~pF~~~p~~~~~PdYy~iI~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~lm~~Na~~yN~~~s~i~~~A~~L~~~f 99 (103)
T cd05520 20 GQLLAEPFLKLPSKRKYPDYYQEIKNPISLQQIRTKLKNGEYETLEELEADLNLMFENAKRYNVPNSRIYKDAEKLQKLM 99 (103)
T ss_pred CCCccHhhhcCCCcccCCCHHHHcCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Confidence 35688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHH
Q psy7968 84 SCL 86 (91)
Q Consensus 84 e~~ 86 (91)
++.
T Consensus 100 ~~~ 102 (103)
T cd05520 100 QAK 102 (103)
T ss_pred HHh
Confidence 874
No 13
>cd05516 Bromo_SNF2L2 Bromodomain, SNF2L2-like subfamily, specific to animals. SNF2L2 (SNF2-alpha) or SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2 is a global transcriptional activator, which cooperates with nuclear hormone receptors to boost transcriptional activation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.97 E-value=1.8e-30 Score=155.82 Aligned_cols=84 Identities=27% Similarity=0.400 Sum_probs=81.1
Q ss_pred CCCCCcCCCCCCCCCCcchhhhcCCcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHH
Q psy7968 5 AGEETASSATFSVEPVPDYHRIIGKPMDFGTIKHKLNMFQYRNNSEVLFDCNLVFDNCFAYNKEDSEIYEPTIKLNTFLS 84 (91)
Q Consensus 5 ~~~~~~F~~pv~~~~~p~Y~~~I~~PmdL~~I~~rl~~~~Y~s~~~f~~D~~li~~Na~~yn~~~s~~~~~a~~l~~~fe 84 (91)
+..+.||..||+...+|+||++|++||||++|++||.+|.|.++++|..||++||.||+.||+++|.++.+|..|++.|+
T Consensus 22 ~~~s~~F~~~p~~~~~pdYy~iI~~Pmdl~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~s~i~~~a~~l~~~f~ 101 (107)
T cd05516 22 RQLAEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLEDLEKDVMLLCQNAQTFNLEGSLIYEDSIVLQSVFK 101 (107)
T ss_pred CEeeHHhhcCCCcccCCCHHHHcCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhh
Q psy7968 85 CLCH 88 (91)
Q Consensus 85 ~~~~ 88 (91)
+.++
T Consensus 102 ~~~~ 105 (107)
T cd05516 102 SARQ 105 (107)
T ss_pred HHHh
Confidence 9875
No 14
>cd05498 Bromo_Brdt_II_like Bromodomain, Brdt_like subfamily, repeat II. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.97 E-value=5.8e-30 Score=152.29 Aligned_cols=83 Identities=31% Similarity=0.459 Sum_probs=79.4
Q ss_pred CCCCCcCCCCCCCC--CCcchhhhcCCcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHH
Q psy7968 5 AGEETASSATFSVE--PVPDYHRIIGKPMDFGTIKHKLNMFQYRNNSEVLFDCNLVFDNCFAYNKEDSEIYEPTIKLNTF 82 (91)
Q Consensus 5 ~~~~~~F~~pv~~~--~~p~Y~~~I~~PmdL~~I~~rl~~~~Y~s~~~f~~D~~li~~Na~~yn~~~s~~~~~a~~l~~~ 82 (91)
+..+.||..||++. ++|+|+++|++||||++|++||++|.|.|+++|..||++||+||+.||+++|.++.+|..|++.
T Consensus 18 ~~~a~~F~~pv~~~~~~~p~Y~~~I~~Pmdl~~I~~kl~~~~Y~s~~ef~~D~~li~~Na~~yn~~~s~i~~~a~~l~~~ 97 (102)
T cd05498 18 KAYAWPFYKPVDPEALGLHDYHDIIKHPMDLSTIKKKLDNREYADAQEFAADVRLMFSNCYKYNPPDHPVHAMARKLQDV 97 (102)
T ss_pred ccccCcccCcCCccccCCCcHHHHccCCCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 46789999999876 6999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHh
Q psy7968 83 LSCLC 87 (91)
Q Consensus 83 fe~~~ 87 (91)
|+++|
T Consensus 98 fe~~~ 102 (102)
T cd05498 98 FEDRW 102 (102)
T ss_pred HHHhC
Confidence 99986
No 15
>cd05506 Bromo_plant1 Bromodomain, uncharacterized subfamily specific to plants. Might function as a global transcription factor. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.97 E-value=7.5e-30 Score=151.07 Aligned_cols=82 Identities=30% Similarity=0.419 Sum_probs=78.8
Q ss_pred CCCCcCCCCCCCC--CCcchhhhcCCcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHH
Q psy7968 6 GEETASSATFSVE--PVPDYHRIIGKPMDFGTIKHKLNMFQYRNNSEVLFDCNLVFDNCFAYNKEDSEIYEPTIKLNTFL 83 (91)
Q Consensus 6 ~~~~~F~~pv~~~--~~p~Y~~~I~~PmdL~~I~~rl~~~~Y~s~~~f~~D~~li~~Na~~yn~~~s~~~~~a~~l~~~f 83 (91)
+.+.+|..||++. ++|+|+++|++||||++|++||++|.|.++++|.+|+++||.||..||+++|.++.+|..|++.|
T Consensus 16 ~~~~~F~~pv~~~~~~~p~Y~~~I~~P~dl~tI~~kL~~~~Y~s~~ef~~D~~li~~Na~~yn~~~s~i~~~a~~l~~~f 95 (99)
T cd05506 16 KWGWVFNAPVDVVALGLPDYFDIIKKPMDLGTVKKKLEKGEYSSPEEFAADVRLTFANAMRYNPPGNDVHTMAKELLKIF 95 (99)
T ss_pred CCCccccCCCCccccCCCCHHHHHcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Confidence 4688999999876 79999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHh
Q psy7968 84 SCLC 87 (91)
Q Consensus 84 e~~~ 87 (91)
+++|
T Consensus 96 e~~w 99 (99)
T cd05506 96 ETRW 99 (99)
T ss_pred HHhC
Confidence 9986
No 16
>cd05515 Bromo_polybromo_V Bromodomain, polybromo repeat V. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.97 E-value=6.9e-30 Score=152.79 Aligned_cols=85 Identities=29% Similarity=0.393 Sum_probs=81.3
Q ss_pred CCCCCCcCCCCCCCCCCcchhhhcCCcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHH
Q psy7968 4 FAGEETASSATFSVEPVPDYHRIIGKPMDFGTIKHKLNMFQYRNNSEVLFDCNLVFDNCFAYNKEDSEIYEPTIKLNTFL 83 (91)
Q Consensus 4 ~~~~~~~F~~pv~~~~~p~Y~~~I~~PmdL~~I~~rl~~~~Y~s~~~f~~D~~li~~Na~~yn~~~s~~~~~a~~l~~~f 83 (91)
.+..+.||..||+..++|+|+++|++||||++|++||.++.|.++++|.+||++||.||+.||+++|.++.+|..|++.|
T Consensus 20 ~~~~a~~F~~~p~~~~~pdYy~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~l~~~Na~~yN~~~s~i~~~A~~L~~~~ 99 (105)
T cd05515 20 GRRLSLIFMRLPSKSEYPDYYDVIKKPIDMEKIRSKIEGNQYQSLDDMVSDFVLMFDNACKYNEPDSQIYKDALTLQKVL 99 (105)
T ss_pred CCcccHHhccCCCcccCCcHHHHcCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhh
Q psy7968 84 SCLCH 88 (91)
Q Consensus 84 e~~~~ 88 (91)
.+..+
T Consensus 100 ~~~~~ 104 (105)
T cd05515 100 LETKR 104 (105)
T ss_pred HHHHc
Confidence 88653
No 17
>cd05511 Bromo_TFIID Bromodomain, TFIID-like subfamily. Human TAFII250 (or TAF250) is the largest subunit of TFIID, a large multi-domain complex, which initiates the assembly of the transcription machinery. TAFII250 contains two bromodomains that specifically bind to acetylated histone H4. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.97 E-value=7.1e-30 Score=154.28 Aligned_cols=85 Identities=28% Similarity=0.411 Sum_probs=81.7
Q ss_pred CCCCcCCCCCCCCCCcchhhhcCCcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHH
Q psy7968 6 GEETASSATFSVEPVPDYHRIIGKPMDFGTIKHKLNMFQYRNNSEVLFDCNLVFDNCFAYNKEDSEIYEPTIKLNTFLSC 85 (91)
Q Consensus 6 ~~~~~F~~pv~~~~~p~Y~~~I~~PmdL~~I~~rl~~~~Y~s~~~f~~D~~li~~Na~~yn~~~s~~~~~a~~l~~~fe~ 85 (91)
..+.||..||++..+|+|+++|++||||++|++||.+|.|.++++|.+|+++||+||..||+++|.++.+|..|.+.|++
T Consensus 16 ~~s~~F~~pv~~~~~p~Y~~~I~~PmdL~tI~~kl~~~~Y~s~~ef~~Dv~li~~Na~~yN~~~s~i~~~A~~l~~~~~~ 95 (112)
T cd05511 16 PDSWPFHTPVNKKKVPDYYKIIKRPMDLQTIRKKISKHKYQSREEFLEDIELIVDNSVLYNGPDSVYTKKAKEMLELAEE 95 (112)
T ss_pred CCchhhcCCCChhhcccHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Hhhhc
Q psy7968 86 LCHLC 90 (91)
Q Consensus 86 ~~~~~ 90 (91)
.++.+
T Consensus 96 ~~~~~ 100 (112)
T cd05511 96 LLAER 100 (112)
T ss_pred HHHHh
Confidence 98753
No 18
>cd05513 Bromo_brd7_like Bromodomain, brd7_like subgroup. The BRD7 gene encodes a nuclear protein that has been shown to inhibit cell growth and the progression of the cell cycle by regulating cell-cycle genes at the transcriptional level. BRD7 has been identified as a gene involved in nasopharyngeal carcinoma. The protein interacts with acetylated histone H3 via its bromodomain. Bromodomains are 110 amino acid long domains that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.97 E-value=8.5e-30 Score=150.68 Aligned_cols=81 Identities=28% Similarity=0.339 Sum_probs=76.2
Q ss_pred CCCCCcCCCCCCCCCCcchhhhcCCcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHH
Q psy7968 5 AGEETASSATFSVEPVPDYHRIIGKPMDFGTIKHKLNMFQYRNNSEVLFDCNLVFDNCFAYNKEDSEIYEPTIKLNTFLS 84 (91)
Q Consensus 5 ~~~~~~F~~pv~~~~~p~Y~~~I~~PmdL~~I~~rl~~~~Y~s~~~f~~D~~li~~Na~~yn~~~s~~~~~a~~l~~~fe 84 (91)
...+.+|..||+...+|+|+++|++||||+||++||+++.|.|+++|.+|+++||.||..||+++|.++++|.+|...-.
T Consensus 16 ~~~~~~F~~PV~~~~~pdY~~vIk~PmDL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~~s~~~~~A~~L~~~~~ 95 (98)
T cd05513 16 KDPHGFFAFPVTDFIAPGYSSIIKHPMDFSTMKEKIKNNDYQSIEEFKDDFKLMCENAMKYNKPDTIYYKAAKKLLHSGM 95 (98)
T ss_pred CCccccccCcCCccccccHHHHHcCccCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHhhh
Confidence 35688999999999999999999999999999999999999999999999999999999999999999999999987644
Q ss_pred H
Q psy7968 85 C 85 (91)
Q Consensus 85 ~ 85 (91)
+
T Consensus 96 ~ 96 (98)
T cd05513 96 K 96 (98)
T ss_pred h
Confidence 3
No 19
>cd05518 Bromo_polybromo_IV Bromodomain, polybromo repeat IV. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.96 E-value=7.4e-30 Score=152.17 Aligned_cols=83 Identities=30% Similarity=0.385 Sum_probs=79.4
Q ss_pred CCCCCCcCCCCCCCCCCcchhhhcCCcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHH
Q psy7968 4 FAGEETASSATFSVEPVPDYHRIIGKPMDFGTIKHKLNMFQYRNNSEVLFDCNLVFDNCFAYNKEDSEIYEPTIKLNTFL 83 (91)
Q Consensus 4 ~~~~~~~F~~pv~~~~~p~Y~~~I~~PmdL~~I~~rl~~~~Y~s~~~f~~D~~li~~Na~~yn~~~s~~~~~a~~l~~~f 83 (91)
.+..+.+|..+|+..++|||+++|++||||++|++||.+|.|.|+++|.+||++||.||+.||+++|.++.+|..|++.|
T Consensus 20 gr~~~~~F~~~p~~~~~pdYy~iIk~Pmdl~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~s~i~~~A~~le~~~ 99 (103)
T cd05518 20 GRRLCDLFMEKPSKKDYPDYYKIILEPIDLKTIEHNIRNDKYATEEELMDDFKLMFRNARHYNEEGSQVYEDANILEKVL 99 (103)
T ss_pred CCcccHHHhcCCCcccCccHHHHcCCCcCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHH
Q psy7968 84 SCL 86 (91)
Q Consensus 84 e~~ 86 (91)
++.
T Consensus 100 ~~~ 102 (103)
T cd05518 100 KEK 102 (103)
T ss_pred Hhc
Confidence 864
No 20
>cd05525 Bromo_ASH1 Bromodomain; ASH1_like sub-family. ASH1 (absent, small, or homeotic 1) is a member of the trithorax-group in Drosophila melanogaster, an epigenetic transcriptional regulator of HOX genes. Drosophila ASH1 has been shown to methylate specific lysines in histones H3 and H4. Mammalian ASH1 has been shown to methylate histone H3. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.96 E-value=8.2e-30 Score=152.66 Aligned_cols=83 Identities=22% Similarity=0.149 Sum_probs=79.8
Q ss_pred CCCCCCcCCCCCCCCCCcchhhhcCCcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHH
Q psy7968 4 FAGEETASSATFSVEPVPDYHRIIGKPMDFGTIKHKLNMFQYRNNSEVLFDCNLVFDNCFAYNKEDSEIYEPTIKLNTFL 83 (91)
Q Consensus 4 ~~~~~~~F~~pv~~~~~p~Y~~~I~~PmdL~~I~~rl~~~~Y~s~~~f~~D~~li~~Na~~yn~~~s~~~~~a~~l~~~f 83 (91)
-+..+.||..+|+...+|+||++|++||||++|++||.+|.|.|+++|..|+.+||+||..||+++|.++.+|..|++.|
T Consensus 22 g~~~s~~F~~lp~k~~~pdYy~~I~~P~dL~tI~~kl~~~~Y~s~~ef~~D~~l~f~Na~~yn~~~S~i~~~A~~L~~~f 101 (106)
T cd05525 22 GQSLAIPFINLPSKKKNPDYYERITDPVDLSTIEKQILTGYYKTPEAFDSDMLKVFRNAEKYYGRKSPIGRDVCRLRKAY 101 (106)
T ss_pred CCcccHhhccCCCcccCCchhhhCCCCcCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHH
Q psy7968 84 SCL 86 (91)
Q Consensus 84 e~~ 86 (91)
++.
T Consensus 102 ~~~ 104 (106)
T cd05525 102 YQA 104 (106)
T ss_pred HHc
Confidence 874
No 21
>cd05500 Bromo_BDF1_2_I Bromodomain. BDF1/BDF2 like subfamily, restricted to fungi, repeat I. BDF1 and BDF2 are yeast transcription factors involved in the expression of a wide range of genes, including snRNAs; they are required for sporulation and DNA repair and protect histone H4 from deacetylation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.96 E-value=1.4e-29 Score=151.05 Aligned_cols=82 Identities=28% Similarity=0.436 Sum_probs=78.5
Q ss_pred CCCCcCCCCCCCC--CCcchhhhcCCcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHH
Q psy7968 6 GEETASSATFSVE--PVPDYHRIIGKPMDFGTIKHKLNMFQYRNNSEVLFDCNLVFDNCFAYNKEDSEIYEPTIKLNTFL 83 (91)
Q Consensus 6 ~~~~~F~~pv~~~--~~p~Y~~~I~~PmdL~~I~~rl~~~~Y~s~~~f~~D~~li~~Na~~yn~~~s~~~~~a~~l~~~f 83 (91)
..+.||..||++. .+|+|+++|++||||++|++||.+|.|.++++|.+||++||+||..||+++|.++.+|..|++.|
T Consensus 20 ~~a~~F~~pv~~~~~~~p~Y~~~I~~P~dL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~~s~~~~~A~~l~~~f 99 (103)
T cd05500 20 KDARPFLVPVDPVKLNIPHYPTIIKKPMDLGTIERKLKSNVYTSVEEFTADFNLMVDNCLTFNGPEHPVSQMGKRLQAAF 99 (103)
T ss_pred CCChhhcCCCCcccccCCCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Confidence 5689999999865 79999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHh
Q psy7968 84 SCLC 87 (91)
Q Consensus 84 e~~~ 87 (91)
++.+
T Consensus 100 e~~~ 103 (103)
T cd05500 100 EKHL 103 (103)
T ss_pred HHhC
Confidence 9864
No 22
>cd05519 Bromo_SNF2 Bromodomain, SNF2-like subfamily, specific to fungi. SNF2 is a yeast protein involved in transcriptional activation, it is the catalytic component of the SWI/SNF ATP-dependent chromatin remodeling complex. The protein is essential for the regulation of gene expression (both positive and negative) of a large number of genes. The SWI/SNF complex changes chromatin structure by altering DNA-histone contacts within the nucleosome, which results in a re-positioning of the nucleosome and facilitates or represses the binding of gene-specific transcription factors. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.96 E-value=1.1e-29 Score=151.40 Aligned_cols=84 Identities=26% Similarity=0.352 Sum_probs=80.4
Q ss_pred CCCCCCcCCCCCCCCCCcchhhhcCCcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHH
Q psy7968 4 FAGEETASSATFSVEPVPDYHRIIGKPMDFGTIKHKLNMFQYRNNSEVLFDCNLVFDNCFAYNKEDSEIYEPTIKLNTFL 83 (91)
Q Consensus 4 ~~~~~~~F~~pv~~~~~p~Y~~~I~~PmdL~~I~~rl~~~~Y~s~~~f~~D~~li~~Na~~yn~~~s~~~~~a~~l~~~f 83 (91)
.+..+.+|..||+...+|+|+++|++||||++|++||++|.|.|+++|..||++||.||+.||+++|.++.+|..|++.|
T Consensus 20 ~~~~~~~F~~~p~~~~~pdYy~iIk~Pmdl~~I~~kl~~~~Y~s~~~f~~D~~li~~Na~~yn~~~s~i~~~A~~l~~~f 99 (103)
T cd05519 20 GRKLSELFLEKPSKKLYPDYYVIIKRPIALDQIKRRIEGRAYKSLEEFLEDFHLMFANARTYNQEGSIVYEDAVEMEKAF 99 (103)
T ss_pred CCchhHHhcCCCCCCCCcCHHHHcCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHh
Q psy7968 84 SCLC 87 (91)
Q Consensus 84 e~~~ 87 (91)
++.+
T Consensus 100 ~~~~ 103 (103)
T cd05519 100 KKKY 103 (103)
T ss_pred HHhC
Confidence 8763
No 23
>cd05502 Bromo_tif1_like Bromodomain; tif1_like subfamily. Tif1 (transcription intermediary factor 1) is a member of the tripartite motif (TRIM) protein family, which is characterized by a particular domain architecture. It functions by recruiting coactivators and/or corepressors to modulate transcription. Vertebrate Tif1-gamma, also labeled E3 ubiquitin-protein ligase TRIM33, plays a role in the control of hematopoiesis. Its homologue in Xenopus laevis, Ectodermin, has been shown to function in germ-layer specification and control of cell growth during embryogenesis. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.96 E-value=1.9e-29 Score=151.73 Aligned_cols=83 Identities=31% Similarity=0.522 Sum_probs=80.0
Q ss_pred CCCCcCCCCCCCCCCcchhhhcCCcCCHHHHHHHHhc---CCCCCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHH
Q psy7968 6 GEETASSATFSVEPVPDYHRIIGKPMDFGTIKHKLNM---FQYRNNSEVLFDCNLVFDNCFAYNKEDSEIYEPTIKLNTF 82 (91)
Q Consensus 6 ~~~~~F~~pv~~~~~p~Y~~~I~~PmdL~~I~~rl~~---~~Y~s~~~f~~D~~li~~Na~~yn~~~s~~~~~a~~l~~~ 82 (91)
..+.||..||++ .+|+|+++|++||||++|++||++ |.|.++++|.+||++||+||..||+++|.++.+|..|++.
T Consensus 20 ~~s~~F~~pv~~-~~p~Y~~iI~~PmdL~tI~~kL~~~~~~~Y~s~~~f~~D~~li~~Na~~yN~~~s~i~~~a~~l~~~ 98 (109)
T cd05502 20 ELSLPFHEPVSP-SVPNYYKIIKTPMDLSLIRKKLQPKSPQHYSSPEEFVADVRLMFKNCYKFNEEDSEVAQAGKELELF 98 (109)
T ss_pred CCChhhcCCCCC-CCCCHHHHCCCCccHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 678999999999 899999999999999999999998 5999999999999999999999999999999999999999
Q ss_pred HHHHhhh
Q psy7968 83 LSCLCHL 89 (91)
Q Consensus 83 fe~~~~~ 89 (91)
|++.++.
T Consensus 99 f~~~~~~ 105 (109)
T cd05502 99 FEEQLKE 105 (109)
T ss_pred HHHHHHH
Confidence 9999874
No 24
>cd05501 Bromo_SP100C_like Bromodomain, SP100C_like subfamily. The SP100C protein is a splice variant of SP100, a major component of PML-SP100 nuclear bodies (NBs), which are poorly understood. It is covalently modified by SUMO-1 and may play a role in processes at the chromatin level. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.96 E-value=2.5e-29 Score=149.25 Aligned_cols=81 Identities=21% Similarity=0.228 Sum_probs=74.9
Q ss_pred CCCCcCCCCCCCCCCcchhhhcCCcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHH
Q psy7968 6 GEETASSATFSVEPVPDYHRIIGKPMDFGTIKHKLNMFQYRNNSEVLFDCNLVFDNCFAYNKEDSEIYEPTIKLNTFLSC 85 (91)
Q Consensus 6 ~~~~~F~~pv~~~~~p~Y~~~I~~PmdL~~I~~rl~~~~Y~s~~~f~~D~~li~~Na~~yn~~~s~~~~~a~~l~~~fe~ 85 (91)
..|.+|..+ +..+|||+++|++||||+||++||.+|.|.|+++|.+||++||.||+.||+++ .++.+|..|++.|++
T Consensus 18 ~~s~~f~~~--p~~~pdY~~iIk~PMDL~tI~~kL~~~~Y~s~~ef~~D~~Lif~N~~~yN~~~-~~~~~a~~L~~~Fek 94 (102)
T cd05501 18 SKSGFFISK--PYYIRDYCQGIKEPMWLNKVKERLNERVYHTVEGFVRDMRLIFHNHKLFYKDD-DFGQVGITLEKKFEK 94 (102)
T ss_pred cccccccCC--CCCCCchHHHcCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHH
Confidence 356777553 45899999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred Hhhh
Q psy7968 86 LCHL 89 (91)
Q Consensus 86 ~~~~ 89 (91)
.|+.
T Consensus 95 ~~~~ 98 (102)
T cd05501 95 NFKE 98 (102)
T ss_pred HHHH
Confidence 9974
No 25
>cd05512 Bromo_brd1_like Bromodomain; brd1_like subfamily. BRD1 is a mammalian gene which encodes for a nuclear protein assumed to be a transcriptional regulator. BRD1 has been implicated with brain development and susceptibility to schizophrenia and bipolar affective disorder. Bromodomains are 110 amino acid long domains that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.96 E-value=1.5e-29 Score=149.64 Aligned_cols=79 Identities=33% Similarity=0.576 Sum_probs=75.8
Q ss_pred CCCCCcCCCCCCCCCCcchhhhcCCcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHH
Q psy7968 5 AGEETASSATFSVEPVPDYHRIIGKPMDFGTIKHKLNMFQYRNNSEVLFDCNLVFDNCFAYNKEDSEIYEPTIKLNTFL 83 (91)
Q Consensus 5 ~~~~~~F~~pv~~~~~p~Y~~~I~~PmdL~~I~~rl~~~~Y~s~~~f~~D~~li~~Na~~yn~~~s~~~~~a~~l~~~f 83 (91)
...+++|..||+..++|+|+++|++||||+||++||.+|.|.|+++|..|+++||.||..||+++|.++++|.+|++.-
T Consensus 16 ~~~~~~F~~pVd~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~s~~~~~A~~l~~~~ 94 (98)
T cd05512 16 KDTAEIFSEPVDLSEVPDYLDHIKQPMDFSTMRKKLESQRYRTLEDFEADFNLIINNCLAYNAKDTIFYRAAVRLRDQG 94 (98)
T ss_pred CCCchhhcCCCCccccCCHHHHhcCCcCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHhh
Confidence 4678899999999999999999999999999999999999999999999999999999999999999999999998764
No 26
>cd05517 Bromo_polybromo_II Bromodomain, polybromo repeat II. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.96 E-value=1.8e-29 Score=150.51 Aligned_cols=83 Identities=19% Similarity=0.288 Sum_probs=79.7
Q ss_pred CCCCCCCcCCCCCCCCCCcchhhhcCCcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHH
Q psy7968 3 TFAGEETASSATFSVEPVPDYHRIIGKPMDFGTIKHKLNMFQYRNNSEVLFDCNLVFDNCFAYNKEDSEIYEPTIKLNTF 82 (91)
Q Consensus 3 ~~~~~~~~F~~pv~~~~~p~Y~~~I~~PmdL~~I~~rl~~~~Y~s~~~f~~D~~li~~Na~~yn~~~s~~~~~a~~l~~~ 82 (91)
.-+..+.+|..+|+..++|+||++|++||||++|++||+++.|.++++|..|+++||.||+.||+++|.++.+|..|++.
T Consensus 19 ~gr~~~~~F~~lp~~~~~pdYy~vI~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~lm~~Na~~yN~~~s~i~~~A~~l~~~ 98 (103)
T cd05517 19 SGRLISELFQKLPSKVLYPDYYAVIKEPIDLKTIAQRIQSGYYKSIEDMEKDLDLMVKNAKTFNEPGSQVYKDANAIKKI 98 (103)
T ss_pred CCCChhHHHhcCCCCCCCCCHHHHcCCCcCHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 35678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHH
Q psy7968 83 LSC 85 (91)
Q Consensus 83 fe~ 85 (91)
|+.
T Consensus 99 f~~ 101 (103)
T cd05517 99 FTA 101 (103)
T ss_pred HHh
Confidence 975
No 27
>cd05524 Bromo_polybromo_I Bromodomain, polybromo repeat I. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.96 E-value=1.9e-29 Score=152.57 Aligned_cols=85 Identities=21% Similarity=0.245 Sum_probs=81.4
Q ss_pred CCCCCcCCCCCCCCCCcchhhhcCCcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHH
Q psy7968 5 AGEETASSATFSVEPVPDYHRIIGKPMDFGTIKHKLNMFQYRNNSEVLFDCNLVFDNCFAYNKEDSEIYEPTIKLNTFLS 84 (91)
Q Consensus 5 ~~~~~~F~~pv~~~~~p~Y~~~I~~PmdL~~I~~rl~~~~Y~s~~~f~~D~~li~~Na~~yn~~~s~~~~~a~~l~~~fe 84 (91)
+..+.+|.++|+...+|+||++|++||||++|++||.++.|.|+++|.+||++||.||+.||+++|.++.+|..|++.|+
T Consensus 23 ~~l~~~F~~~p~~~~~PdYy~iI~~Pmdl~tI~~kl~~~~Y~s~~~f~~D~~lm~~Na~~yN~~~s~~~~~A~~L~~~f~ 102 (113)
T cd05524 23 RILCESFIRVPKRRNEPEYYEVVSNPIDLLKIQQKLKTEEYDDVDDLTADFELLINNAKAYYKPDSPEHKDACKLWELFL 102 (113)
T ss_pred CchhHHHhcCCCcccCCCHHHHhCCccCHHHHHHHhCcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhh
Q psy7968 85 CLCHL 89 (91)
Q Consensus 85 ~~~~~ 89 (91)
+.++.
T Consensus 103 ~~~~~ 107 (113)
T cd05524 103 SARNE 107 (113)
T ss_pred HHHHH
Confidence 98864
No 28
>cd05528 Bromo_AAA Bromodomain; sub-family co-occurring with AAA domains. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. The structure(2DKW) in this alignment is an uncharacterized protein predicted from analysis of cDNA clones from human fetal liver
Probab=99.96 E-value=3.9e-29 Score=151.01 Aligned_cols=84 Identities=30% Similarity=0.430 Sum_probs=80.0
Q ss_pred CCCCcCCCCCCCCCCcchhhhcCCcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhcCCC----CHHHHHHHHHHH
Q psy7968 6 GEETASSATFSVEPVPDYHRIIGKPMDFGTIKHKLNMFQYRNNSEVLFDCNLVFDNCFAYNKED----SEIYEPTIKLNT 81 (91)
Q Consensus 6 ~~~~~F~~pv~~~~~p~Y~~~I~~PmdL~~I~~rl~~~~Y~s~~~f~~D~~li~~Na~~yn~~~----s~~~~~a~~l~~ 81 (91)
+.+.||..||++.++|||+++|++||||++|++||++|.|.|+++|.+|+++||+||+.||+++ +.++.+|..|++
T Consensus 19 ~~~~~F~~pv~~~~~pdY~~vI~~PmdL~tI~~kl~~~~Y~s~~ef~~Dv~li~~Na~~yN~~~s~~~s~i~~~A~~L~~ 98 (112)
T cd05528 19 KRFNAFTKPVDEEEVPDYYEIIKQPMDLQTILQKLDTHQYLTAKDFLKDIDLIVTNALEYNPDRDPADKLIRSRACELRD 98 (112)
T ss_pred CCchhhcCCCCccccCcHHHHHcCCCCHHHHHHHHcCCCcCCHHHHHHHHHHHHHHHHHHCCCCCccccHHHHHHHHHHH
Confidence 5678999999999999999999999999999999999999999999999999999999999995 689999999999
Q ss_pred HHHHHhhh
Q psy7968 82 FLSCLCHL 89 (91)
Q Consensus 82 ~fe~~~~~ 89 (91)
.+.++++.
T Consensus 99 ~~~~~~~~ 106 (112)
T cd05528 99 EVHAMIEA 106 (112)
T ss_pred HHHHHHHh
Confidence 99998863
No 29
>cd05529 Bromo_WDR9_I_like Bromodomain; WDR9 repeat I_like subfamily. WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional regulator involved in chromatin remodeling and play a role in embryonic development. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.96 E-value=4.6e-29 Score=153.78 Aligned_cols=87 Identities=23% Similarity=0.305 Sum_probs=83.3
Q ss_pred CCCCCCcCCCCCCCC-CCcchhhhcCCcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHH
Q psy7968 4 FAGEETASSATFSVE-PVPDYHRIIGKPMDFGTIKHKLNMFQYRNNSEVLFDCNLVFDNCFAYNKEDSEIYEPTIKLNTF 82 (91)
Q Consensus 4 ~~~~~~~F~~pv~~~-~~p~Y~~~I~~PmdL~~I~~rl~~~~Y~s~~~f~~D~~li~~Na~~yn~~~s~~~~~a~~l~~~ 82 (91)
-...+.||..||+.. .+|+|+++|++||||++|++||++|.|+++++|..|+++||.||+.||+++|.++.+|..|++.
T Consensus 41 ~~~~~~~F~~pv~~~~~~p~Y~~iI~~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~Li~~Na~~yN~~~s~i~~~A~~l~~~ 120 (128)
T cd05529 41 QLEIAEYFEYPVDLRAWYPDYWNRVPVPMDLETIRSRLENRYYRSLEALRHDVRLILSNAETFNEPNSEIAKKAKRLSDW 120 (128)
T ss_pred cCcccccccCCCCccccCCcHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 456789999999999 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhc
Q psy7968 83 LSCLCHLC 90 (91)
Q Consensus 83 fe~~~~~~ 90 (91)
|++.++.|
T Consensus 121 ~~~~l~~~ 128 (128)
T cd05529 121 LLRILSSL 128 (128)
T ss_pred HHHHhccC
Confidence 99998754
No 30
>cd05522 Bromo_Rsc1_2_II Bromodomain, repeat II in Rsc1/2_like subfamily, specific to fungi. Rsc1 and Rsc2 are components of the RSC complex (remodeling the structure of chromatin), are essential for transcriptional control, and have a specific domain architecture including two bromodomains. The RSC complex has also been linked to homologous recombination and nonhomologous end-joining repair of DNA double strand breaks. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.96 E-value=1.8e-28 Score=146.48 Aligned_cols=82 Identities=26% Similarity=0.351 Sum_probs=79.4
Q ss_pred CCCCCcCCCCCCCCCCcchhhhcCCcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHH
Q psy7968 5 AGEETASSATFSVEPVPDYHRIIGKPMDFGTIKHKLNMFQYRNNSEVLFDCNLVFDNCFAYNKEDSEIYEPTIKLNTFLS 84 (91)
Q Consensus 5 ~~~~~~F~~pv~~~~~p~Y~~~I~~PmdL~~I~~rl~~~~Y~s~~~f~~D~~li~~Na~~yn~~~s~~~~~a~~l~~~fe 84 (91)
+..+.||..+|+....|+||++|++||||++|++||.+|.|.++++|..|+++||.||+.||+++|.++.+|..|++.|+
T Consensus 22 ~~l~~~F~~~p~~~~~pdYy~~I~~Pmdl~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yn~~~s~i~~~A~~l~~~f~ 101 (104)
T cd05522 22 RLLTLHFEKLPDKAREPEYYQEISNPISLDDIKKKVKRRKYKSFDQFLNDLNLMFENAKLYNENDSQEYKDAVLLEKEAR 101 (104)
T ss_pred CcccHHHhcCCCccccCcHHHHhCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Confidence 56889999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HH
Q psy7968 85 CL 86 (91)
Q Consensus 85 ~~ 86 (91)
++
T Consensus 102 ~l 103 (104)
T cd05522 102 LL 103 (104)
T ss_pred Hh
Confidence 74
No 31
>KOG1474|consensus
Probab=99.95 E-value=1.2e-28 Score=183.16 Aligned_cols=84 Identities=37% Similarity=0.579 Sum_probs=80.6
Q ss_pred CCCCcCCCCCCCC--CCcchhhhcCCcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHH
Q psy7968 6 GEETASSATFSVE--PVPDYHRIIGKPMDFGTIKHKLNMFQYRNNSEVLFDCNLVFDNCFAYNKEDSEIYEPTIKLNTFL 83 (91)
Q Consensus 6 ~~~~~F~~pv~~~--~~p~Y~~~I~~PmdL~~I~~rl~~~~Y~s~~~f~~D~~li~~Na~~yn~~~s~~~~~a~~l~~~f 83 (91)
+++|||..|||+. ++|||+++|++||||+||+.||.+|.|.++++|..||||||.||++||++++++|.+|..|++.|
T Consensus 238 k~awpF~~PVD~v~LgLpDY~~IIK~PMDLgTIK~kL~~~~Y~~~~eF~~DVRL~F~Ncm~YNp~g~dV~~Ma~~L~~~F 317 (640)
T KOG1474|consen 238 KHAWPFNEPVDVVKLGLPDYHDIIKHPMDLGTIKKKLEKGEYKSAEEFAADVRLTFDNCMTYNPEGSDVYAMAKKLQEVF 317 (640)
T ss_pred cCCCCcCCCcCHHhcCCcchhhhcCCCccHHHHHhhhcccccCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Confidence 4569999999986 68999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhh
Q psy7968 84 SCLCHL 89 (91)
Q Consensus 84 e~~~~~ 89 (91)
+.+|+.
T Consensus 318 e~rw~~ 323 (640)
T KOG1474|consen 318 EERWAS 323 (640)
T ss_pred HHHHhh
Confidence 999974
No 32
>smart00297 BROMO bromo domain.
Probab=99.95 E-value=4.4e-28 Score=144.55 Aligned_cols=84 Identities=35% Similarity=0.460 Sum_probs=81.5
Q ss_pred CCCCcCCCCCCCCCCcchhhhcCCcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHH
Q psy7968 6 GEETASSATFSVEPVPDYHRIIGKPMDFGTIKHKLNMFQYRNNSEVLFDCNLVFDNCFAYNKEDSEIYEPTIKLNTFLSC 85 (91)
Q Consensus 6 ~~~~~F~~pv~~~~~p~Y~~~I~~PmdL~~I~~rl~~~~Y~s~~~f~~D~~li~~Na~~yn~~~s~~~~~a~~l~~~fe~ 85 (91)
..+.+|..||++..+|+|+++|++||||++|++||++|.|.|+++|.+||++||.||..||+++|.++.+|..|.+.|++
T Consensus 23 ~~~~~F~~~~~~~~~p~Y~~~i~~P~dl~~I~~kl~~~~Y~s~~ef~~D~~li~~Na~~~n~~~s~~~~~a~~l~~~f~~ 102 (107)
T smart00297 23 RLSWPFLKPVDRKEAPDYYDIIKKPMDLSTIKKKLENGKYSSVEEFVADVQLMFSNAKTYNGPDSEVYKDAKKLEKFFEK 102 (107)
T ss_pred ccchhhccCCChhhccCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Hhhh
Q psy7968 86 LCHL 89 (91)
Q Consensus 86 ~~~~ 89 (91)
.|+.
T Consensus 103 ~~~~ 106 (107)
T smart00297 103 KLRE 106 (107)
T ss_pred HHhh
Confidence 9874
No 33
>cd05521 Bromo_Rsc1_2_I Bromodomain, repeat I in Rsc1/2_like subfamily, specific to fungi. Rsc1 and Rsc2 are components of the RSC complex (remodeling the structure of chromatin), are essential for transcriptional control, and have a specific domain architecture including two bromodomains. The RSC complex has also been linked to homologous recombination and nonhomologous end-joining repair of DNA double strand breaks. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.95 E-value=2.3e-27 Score=142.02 Aligned_cols=82 Identities=24% Similarity=0.334 Sum_probs=77.9
Q ss_pred CCCCCcCCCCCCCCCCcchhhhcCCcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHH
Q psy7968 5 AGEETASSATFSVEPVPDYHRIIGKPMDFGTIKHKLNMFQYRNNSEVLFDCNLVFDNCFAYNKEDSEIYEPTIKLNTFLS 84 (91)
Q Consensus 5 ~~~~~~F~~pv~~~~~p~Y~~~I~~PmdL~~I~~rl~~~~Y~s~~~f~~D~~li~~Na~~yn~~~s~~~~~a~~l~~~fe 84 (91)
+..+.+|..+++...+||||++|++||||++|++||++ |.++++|.+|+++||+||+.||+++|.++.+|..|++.|.
T Consensus 22 ~~~~~~F~~lp~~~~~pdYy~iI~~PmdL~tI~~kl~~--Y~s~~ef~~D~~li~~Na~~yN~~~s~i~~~A~~le~~~~ 99 (106)
T cd05521 22 IEIHPIFNVLPLRKDYPDYYKIIKNPLSLNTVKKRLPH--YTNAQEFVNDLAQIPWNARLYNTKGSVIYKYALILEKYIN 99 (106)
T ss_pred CCchHhhhcCCccccCccHHHHhcCCCCHHHHHHHHHc--CCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 45678999999999999999999999999999999998 9999999999999999999999999999999999999999
Q ss_pred HHhh
Q psy7968 85 CLCH 88 (91)
Q Consensus 85 ~~~~ 88 (91)
+.+.
T Consensus 100 ~~~~ 103 (106)
T cd05521 100 DVII 103 (106)
T ss_pred Hhhc
Confidence 8764
No 34
>cd04369 Bromodomain Bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=99.94 E-value=1.3e-26 Score=135.11 Aligned_cols=82 Identities=32% Similarity=0.457 Sum_probs=79.3
Q ss_pred CCCCcCCCCCCCCCCcchhhhcCCcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHH
Q psy7968 6 GEETASSATFSVEPVPDYHRIIGKPMDFGTIKHKLNMFQYRNNSEVLFDCNLVFDNCFAYNKEDSEIYEPTIKLNTFLSC 85 (91)
Q Consensus 6 ~~~~~F~~pv~~~~~p~Y~~~I~~PmdL~~I~~rl~~~~Y~s~~~f~~D~~li~~Na~~yn~~~s~~~~~a~~l~~~fe~ 85 (91)
..+.+|..||++..+|+|+++|++||||++|++|+.+|.|.++++|.+|+++||.||+.||++++.++.+|..|+..|++
T Consensus 18 ~~~~~F~~~~~~~~~~~Y~~~i~~P~~l~~I~~kl~~~~Y~s~~~f~~D~~li~~Na~~~n~~~~~~~~~a~~l~~~~~~ 97 (99)
T cd04369 18 DLSEPFLEPVDPKEAPDYYEVIKNPMDLSTIKKKLKNGEYKSLEEFEADVRLIFSNAKTYNGPGSPIYKDAKKLEKLFEK 97 (99)
T ss_pred cccHHHhcCCChhcCCCHHHHHhCcccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred Hh
Q psy7968 86 LC 87 (91)
Q Consensus 86 ~~ 87 (91)
.+
T Consensus 98 ~~ 99 (99)
T cd04369 98 LL 99 (99)
T ss_pred hC
Confidence 64
No 35
>cd05492 Bromo_ZMYND11 Bromodomain; ZMYND11_like sub-family. ZMYND11 or BS69 is a ubiquitously expressed nuclear protein that has been shown to associate with chromatin. It interacts with chromatin remodeling factors and might play a role in chromatin remodeling and gene expression. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.94 E-value=2.3e-26 Score=138.07 Aligned_cols=83 Identities=23% Similarity=0.270 Sum_probs=75.3
Q ss_pred CCCCcCCCCCC-----CCCCcchhhhcCCcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHH
Q psy7968 6 GEETASSATFS-----VEPVPDYHRIIGKPMDFGTIKHKLNMFQYRNNSEVLFDCNLVFDNCFAYNKEDSEIYEPTIKLN 80 (91)
Q Consensus 6 ~~~~~F~~pv~-----~~~~p~Y~~~I~~PmdL~~I~~rl~~~~Y~s~~~f~~D~~li~~Na~~yn~~~s~~~~~a~~l~ 80 (91)
..+.||..||. ...+|+|+.+|++||||+||++||++|.|+++++|.+||++||+||..|||++|.++.+|..|-
T Consensus 17 p~~~~~~~~v~~~~~~~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~LI~~N~~~yNg~~s~~~~~A~~l~ 96 (109)
T cd05492 17 PPDTTNRAIVLNKRGKATKLPKRRRLIHTHLDVADIQEKINSEKYTSLEEFKADALLLLHNTAIFHGADSEQYDAARWLY 96 (109)
T ss_pred cccccccccccccCchhccCCCHHHHhCCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Confidence 44689999993 3369999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHhh
Q psy7968 81 TFLSCLCH 88 (91)
Q Consensus 81 ~~fe~~~~ 88 (91)
+.....+.
T Consensus 97 ~d~~~el~ 104 (109)
T cd05492 97 RDTCHDLR 104 (109)
T ss_pred HHHHHHHH
Confidence 87766654
No 36
>PF00439 Bromodomain: Bromodomain; InterPro: IPR001487 Bromodomains are found in a variety of mammalian, invertebrate and yeast DNA-binding proteins []. Bromodomains can interact with acetylated lysine []. In some proteins, the classical bromodomain has diverged to such an extent that parts of the region are either missing or contain an insertion (e.g., mammalian protein HRX, Caenorhabditis elegans hypothetical protein ZK783.4, yeast protein YTA7). The bromodomain may occur as a single copy, or in duplicate. The precise function of the domain is unclear, but it may be involved in protein-protein interactions and may play a role in assembly or activity of multi-component complexes involved in transcriptional activation [].; GO: 0005515 protein binding; PDB: 3P1C_A 4A9K_B 3SVH_A 3P1E_B 3P1F_A 1JSP_B 2L85_A 3P1D_B 3DWY_B 2D82_A ....
Probab=99.93 E-value=1.3e-25 Score=128.71 Aligned_cols=73 Identities=36% Similarity=0.509 Sum_probs=68.5
Q ss_pred CCCCcCCCCCCCCCCcchhhhcCCcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHH
Q psy7968 6 GEETASSATFSVEPVPDYHRIIGKPMDFGTIKHKLNMFQYRNNSEVLFDCNLVFDNCFAYNKEDSEIYEPTIK 78 (91)
Q Consensus 6 ~~~~~F~~pv~~~~~p~Y~~~I~~PmdL~~I~~rl~~~~Y~s~~~f~~D~~li~~Na~~yn~~~s~~~~~a~~ 78 (91)
..+.+|..||+...+|+|+++|++||||++|++||++|.|.++++|.+||++||.||..||+++|.++.+|.+
T Consensus 12 ~~~~~F~~~~~~~~~p~y~~~i~~P~dL~~I~~kl~~~~Y~s~~~f~~Dv~~i~~Na~~yn~~~s~~~~~A~~ 84 (84)
T PF00439_consen 12 PISSPFSKPVDPKEYPDYYEIIKNPMDLSTIRKKLENGKYKSIEEFEADVRLIFQNARRYNPPDSPIYKAAEK 84 (84)
T ss_dssp TTGGGGSSSTHTTTSTTHHHHSSSS--HHHHHHHHHTTSSSSHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHH
T ss_pred CCchhhcCCCChhhCCCHHHHHhhccchhhhhHHhhccchhhHHHHHHHHHHHHHHHHHHCCCcCHHHHHhcC
Confidence 4788999999999999999999999999999999999999999999999999999999999999999999874
No 37
>COG5076 Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription]
Probab=99.89 E-value=2.4e-23 Score=146.89 Aligned_cols=88 Identities=33% Similarity=0.409 Sum_probs=84.4
Q ss_pred CCCCCCCCcCCCCCCCCCCcchhhhcCCcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHH
Q psy7968 2 QTFAGEETASSATFSVEPVPDYHRIIGKPMDFGTIKHKLNMFQYRNNSEVLFDCNLVFDNCFAYNKEDSEIYEPTIKLNT 81 (91)
Q Consensus 2 ~~~~~~~~~F~~pv~~~~~p~Y~~~I~~PmdL~~I~~rl~~~~Y~s~~~f~~D~~li~~Na~~yn~~~s~~~~~a~~l~~ 81 (91)
+..+..+.+|..+|++..+|+||.+|+.||||.+|+++|+.+.|.++++|..|+.+||.||..||++++.++.+|..|++
T Consensus 160 ~~~~~~s~~F~~~p~k~~~PdYy~iIk~Pm~L~~i~kkl~~~~Y~s~eef~~D~~lM~~N~~~yN~~~s~v~~~a~~l~~ 239 (371)
T COG5076 160 RDGRFLSSIFLGLPSKREYPDYYEIIKSPMDLLTIQKKLKNGRYKSFEEFVSDLNLMFDNCKLYNGPDSSVYVDAKELEK 239 (371)
T ss_pred ccccccccccccCCccccCCChheeecchhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhccCCCcchhhhhHHHHH
Confidence 45677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhh
Q psy7968 82 FLSCLCHL 89 (91)
Q Consensus 82 ~fe~~~~~ 89 (91)
.+.++++.
T Consensus 240 ~~~~~i~~ 247 (371)
T COG5076 240 YFLKLIEE 247 (371)
T ss_pred HHHHHHHh
Confidence 99999873
No 38
>cd05526 Bromo_polybromo_VI Bromodomain, polybromo repeat VI. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.88 E-value=2.2e-22 Score=120.80 Aligned_cols=83 Identities=19% Similarity=0.174 Sum_probs=76.2
Q ss_pred CCCCCCcCCCCCCCCCCcchhhhcCCcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHH
Q psy7968 4 FAGEETASSATFSVEPVPDYHRIIGKPMDFGTIKHKLNMFQYRNNSEVLFDCNLVFDNCFAYNKEDSEIYEPTIKLNTFL 83 (91)
Q Consensus 4 ~~~~~~~F~~pv~~~~~p~Y~~~I~~PmdL~~I~~rl~~~~Y~s~~~f~~D~~li~~Na~~yn~~~s~~~~~a~~l~~~f 83 (91)
.+-.|.||.+.|+ ..|+|+.+|+.||||..|++||.+|.|.++++|.+|+.+||.||++||+++|.++.+|..|+++|
T Consensus 23 Gr~~s~~f~~LP~--~~~~~~~~ik~Pi~l~~Ik~ki~~~~Y~~ld~~~~D~~lmf~NAr~yN~~~S~iy~dA~eLq~~f 100 (110)
T cd05526 23 GRCYSDSLAELPE--LAVDGVGPKKIPLTLDIIKRNVDKGRYRRLDKFQEDMFEVLERARRLSRTDSEIYEDAVELQQFF 100 (110)
T ss_pred CCCchHHHHHCCC--cccCchhhhcCCccHHHHHHHHHcCCcCcHHHHHHHHHHHHHHHHHhCcccCHHHHHHHHHHHHH
Confidence 3557889999888 44677899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhh
Q psy7968 84 SCLCH 88 (91)
Q Consensus 84 e~~~~ 88 (91)
.+.-.
T Consensus 101 ~~~rd 105 (110)
T cd05526 101 IKIRD 105 (110)
T ss_pred HHHHH
Confidence 87654
No 39
>KOG1245|consensus
Probab=99.85 E-value=9.1e-22 Score=154.77 Aligned_cols=82 Identities=37% Similarity=0.481 Sum_probs=79.7
Q ss_pred CCCCcCCCCCCCCCCcchhhhcCCcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHH
Q psy7968 6 GEETASSATFSVEPVPDYHRIIGKPMDFGTIKHKLNMFQYRNNSEVLFDCNLVFDNCFAYNKEDSEIYEPTIKLNTFLSC 85 (91)
Q Consensus 6 ~~~~~F~~pv~~~~~p~Y~~~I~~PmdL~~I~~rl~~~~Y~s~~~f~~D~~li~~Na~~yn~~~s~~~~~a~~l~~~fe~ 85 (91)
+.++||+.||++..+|||++||++||||+||+.++..|.|.++++|..|+++||.||..||++ |.+++++..|.++|++
T Consensus 1317 ~~awPFlepVn~~~vp~Y~~IIk~Pmdl~tir~k~~~~~Y~~~eef~~Di~lvf~Nc~~yN~~-s~i~~ag~~l~~ff~~ 1395 (1404)
T KOG1245|consen 1317 KAAWPFLEPVNPKEVPDYYDIIKKPMDLSTIREKLSKGIYPSPEEFATDIELVFDNCETYNED-SEIGRAGTCLRRFFHK 1395 (1404)
T ss_pred hhcchhhccCChhhcccHHHHhcChhHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhccc-hhhhhhcchHHHHHHH
Confidence 468999999999999999999999999999999999999999999999999999999999999 9999999999999998
Q ss_pred Hhh
Q psy7968 86 LCH 88 (91)
Q Consensus 86 ~~~ 88 (91)
.|.
T Consensus 1396 ~~~ 1398 (1404)
T KOG1245|consen 1396 RWR 1398 (1404)
T ss_pred HHH
Confidence 876
No 40
>KOG1472|consensus
Probab=99.71 E-value=6.5e-18 Score=126.00 Aligned_cols=84 Identities=29% Similarity=0.453 Sum_probs=80.0
Q ss_pred CCCCCcCCCCCCCCCCcchhhhcCCcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHH
Q psy7968 5 AGEETASSATFSVEPVPDYHRIIGKPMDFGTIKHKLNMFQYRNNSEVLFDCNLVFDNCFAYNKEDSEIYEPTIKLNTFLS 84 (91)
Q Consensus 5 ~~~~~~F~~pv~~~~~p~Y~~~I~~PmdL~~I~~rl~~~~Y~s~~~f~~D~~li~~Na~~yn~~~s~~~~~a~~l~~~fe 84 (91)
-+.++||.+||+..++||||++|.+||||.||+.+|.++.|.....|+.|+.+||.||+.||++++..++.|..|+..|.
T Consensus 621 h~~awPf~~Pv~~~e~pdyy~~I~~pmDl~tM~~~l~~~~y~~~~~f~ad~~~vf~ncr~yn~~~~~y~k~~~~le~~~~ 700 (720)
T KOG1472|consen 621 HGDAWPFLKPVNKKEVPDYYDVIKHPMDLRTMQNRLKDNQYTEVELFMADVVRVFANCRMYNGSDTQYYKCAQALEKFFL 700 (720)
T ss_pred CCccCCccCccccccCCcHHHHhcccccHHHHhhhccccchhhHHHHHHHHHHHHhhhhccCCccchheecccchhhhhc
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred HHhh
Q psy7968 85 CLCH 88 (91)
Q Consensus 85 ~~~~ 88 (91)
..+.
T Consensus 701 ~k~~ 704 (720)
T KOG1472|consen 701 FKLN 704 (720)
T ss_pred chhh
Confidence 7664
No 41
>cd05491 Bromo_TBP7_like Bromodomain; TBP7_like subfamily, limited to fungi. TBP7, or TAT-binding protein homolog 7, is a yeast protein of unknown function that contains AAA-superfamily ATP-ase domains and a bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=99.56 E-value=1.5e-14 Score=87.47 Aligned_cols=42 Identities=19% Similarity=0.191 Sum_probs=39.7
Q ss_pred CCcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhcCCC
Q psy7968 28 GKPMDFGTIKHKLNMFQYRNNSEVLFDCNLVFDNCFAYNKED 69 (91)
Q Consensus 28 ~~PmdL~~I~~rl~~~~Y~s~~~f~~D~~li~~Na~~yn~~~ 69 (91)
-.||||+||++||.+|.|.++++|++|+++||.||+.||+++
T Consensus 62 ~y~MDL~tIe~RL~ng~Y~tp~~F~~DiklI~~Nc~~ynd~d 103 (119)
T cd05491 62 FYNMDLDTIEERLWNGYYATPKDFLKDIKRIVRDAKTIGDRE 103 (119)
T ss_pred EeccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCHH
Confidence 368999999999999999999999999999999999999864
No 42
>KOG0955|consensus
Probab=99.39 E-value=5e-13 Score=103.50 Aligned_cols=81 Identities=30% Similarity=0.471 Sum_probs=76.8
Q ss_pred CcCCCCCCCCCCcchhhhcCCcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhh
Q psy7968 9 TASSATFSVEPVPDYHRIIGKPMDFGTIKHKLNMFQYRNNSEVLFDCNLVFDNCFAYNKEDSEIYEPTIKLNTFLSCLCH 88 (91)
Q Consensus 9 ~~F~~pv~~~~~p~Y~~~I~~PmdL~~I~~rl~~~~Y~s~~~f~~D~~li~~Na~~yn~~~s~~~~~a~~l~~~fe~~~~ 88 (91)
..|..|++..++|||.++|++|||+.+++.+++.|.|.++++|..|+.+|..||..||..+..++.+|..+++...+.+.
T Consensus 584 gif~~pvd~~e~pdy~~iik~pmd~~t~~~kl~s~~y~tle~ieed~~l~~~nc~~yn~~dtv~~r~av~~~e~~~~~~~ 663 (1051)
T KOG0955|consen 584 GIFAEPVDPSELPDYIDIIKKPMDFFTMRLKLESGAYSTLEPIEEDVNLIVSNCMEYNAKDTVYYRAAVRLRELIKKDFR 663 (1051)
T ss_pred CceeeccChhhcccHHHHhcCccchhhhhhhccccchhhhhHHHHhHhHhHhHHHHhhccCeehHhhhHHHHhhhhhHHH
Confidence 45899999999999999999999999999999999999999999999999999999999999999999999998877765
Q ss_pred h
Q psy7968 89 L 89 (91)
Q Consensus 89 ~ 89 (91)
.
T Consensus 664 ~ 664 (1051)
T KOG0955|consen 664 N 664 (1051)
T ss_pred h
Confidence 3
No 43
>KOG1827|consensus
Probab=99.38 E-value=8.7e-13 Score=97.69 Aligned_cols=84 Identities=25% Similarity=0.301 Sum_probs=77.8
Q ss_pred CCCCCCcCCCCCCCCCCcchhhhcCCcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHH
Q psy7968 4 FAGEETASSATFSVEPVPDYHRIIGKPMDFGTIKHKLNMFQYRNNSEVLFDCNLVFDNCFAYNKEDSEIYEPTIKLNTFL 83 (91)
Q Consensus 4 ~~~~~~~F~~pv~~~~~p~Y~~~I~~PmdL~~I~~rl~~~~Y~s~~~f~~D~~li~~Na~~yn~~~s~~~~~a~~l~~~f 83 (91)
++.....|.+.++....|+||.+|.+||+|..|++|+..+.|.+.+.|..|+.+|++||+.||.++|.++++|..|+..|
T Consensus 72 gk~~~d~feklp~~~~~p~yy~~i~~pisl~~ik~kv~k~~y~~~~~f~~D~~lm~ena~~~n~~ds~~~~~s~~l~~~~ 151 (629)
T KOG1827|consen 72 GKQLFDKFEKLPSRKEFPEYYYVIQQPISLDQIKRKVKKGRYKRLSFFQLDFLLMTENARLYNRPDSLIYKDSGELEKYF 151 (629)
T ss_pred CcccchhHhhccccccCCCcceeecCcccHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhhhcch
Confidence 34456678888899999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHh
Q psy7968 84 SCLC 87 (91)
Q Consensus 84 e~~~ 87 (91)
....
T Consensus 152 ~~~~ 155 (629)
T KOG1827|consen 152 ISLE 155 (629)
T ss_pred hhhh
Confidence 7743
No 44
>cd05494 Bromodomain_1 Bromodomain; uncharacterized subfamily. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=99.37 E-value=2.6e-13 Score=82.18 Aligned_cols=62 Identities=16% Similarity=0.072 Sum_probs=49.0
Q ss_pred CCCCcCCCCCCC--CCCcchhhhcCCcCCHHHHHHHHhcCC-------CCCHHHHHHHHHHHHHHHhhhcC
Q psy7968 6 GEETASSATFSV--EPVPDYHRIIGKPMDFGTIKHKLNMFQ-------YRNNSEVLFDCNLVFDNCFAYNK 67 (91)
Q Consensus 6 ~~~~~F~~pv~~--~~~p~Y~~~I~~PmdL~~I~~rl~~~~-------Y~s~~~f~~D~~li~~Na~~yn~ 67 (91)
+.++||..||++ .++|+|+++|++||||+||+++|.++. |..-....++...++.||..++.
T Consensus 19 ~~~~pF~~PVd~~~~~~pdY~~iIK~PMDL~ti~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (114)
T cd05494 19 EDAWPFLEPVNPPRRGAPDYRDVIKRPMSFGTKVNNIVETGARDLEDLQIVQEDPADKQIDDEGRRSPSNI 89 (114)
T ss_pred CCCCCcCCCCCchhcCCCChhhhcCCCCChHHHHHHHHccccccccccccccccccccccccccccCcccc
Confidence 578999999999 899999999999999999999999873 33334455566666666655554
No 45
>KOG0008|consensus
Probab=99.36 E-value=5.1e-13 Score=104.43 Aligned_cols=82 Identities=28% Similarity=0.364 Sum_probs=74.6
Q ss_pred CCCCcCCCCCCCCCCcchhhhcCCcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHH
Q psy7968 6 GEETASSATFSVEPVPDYHRIIGKPMDFGTIKHKLNMFQYRNNSEVLFDCNLVFDNCFAYNKEDSEIYEPTIKLNTFLSC 85 (91)
Q Consensus 6 ~~~~~F~~pv~~~~~p~Y~~~I~~PmdL~~I~~rl~~~~Y~s~~~f~~D~~li~~Na~~yn~~~s~~~~~a~~l~~~fe~ 85 (91)
..|+||..||+.+.+|+||.+|++||||.+|.+++....|.+.++|.+|+++|+.||..|||..+....-|+++-.+...
T Consensus 1398 pes~~f~~~v~~k~~~~yy~kik~pmdl~~i~~n~~~~~y~s~~e~l~dv~~i~~n~~~~ng~e~~y~~k~~k~~ev~~~ 1477 (1563)
T KOG0008|consen 1398 PESWPFHEPVNKKRVPDYYKKIKNPMDLETILKNIPPHKYDSRSEFLDDVNLIYVNSVEYNGAESAYTKKARKIGEVGLA 1477 (1563)
T ss_pred chhcccccccchhhchHHHHHhcChhhHHHHhhcCCccccccHHHHhhhhHhhcccceeecCccccccHHHHHHHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999988777776665544
Q ss_pred Hh
Q psy7968 86 LC 87 (91)
Q Consensus 86 ~~ 87 (91)
.+
T Consensus 1478 ~~ 1479 (1563)
T KOG0008|consen 1478 NL 1479 (1563)
T ss_pred HH
Confidence 43
No 46
>KOG1472|consensus
Probab=99.27 E-value=5.2e-12 Score=94.83 Aligned_cols=67 Identities=34% Similarity=0.457 Sum_probs=63.9
Q ss_pred CCCCcCCCCCCCCCCcchhhhcCCcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhcCCCCHH
Q psy7968 6 GEETASSATFSVEPVPDYHRIIGKPMDFGTIKHKLNMFQYRNNSEVLFDCNLVFDNCFAYNKEDSEI 72 (91)
Q Consensus 6 ~~~~~F~~pv~~~~~p~Y~~~I~~PmdL~~I~~rl~~~~Y~s~~~f~~D~~li~~Na~~yn~~~s~~ 72 (91)
+++.||..+|+....|+||.+|+.||||+++.+++..+.|.+.++|+.|+.+||.||..||...+..
T Consensus 302 ~~s~~~~~kvs~~~a~~y~~i~k~pmdl~t~~~k~~~~~y~~~~~fv~d~~~~~~n~~~~n~ee~~~ 368 (720)
T KOG1472|consen 302 EHSTPFLEKVSKEDAPNYYQIIKAPMDLSTELKKLKSGPYCSKEEFVNDLMLIWRNCEKYNSEESHG 368 (720)
T ss_pred ccccccccCCChhhCcchHHhhhcchHHHHHHHHhccccccchhHHHHHHHHHHhcchhhccccchh
Confidence 6899999999999999999999999999999999999999999999999999999999999876553
No 47
>KOG0386|consensus
Probab=99.26 E-value=7.2e-12 Score=96.29 Aligned_cols=85 Identities=28% Similarity=0.385 Sum_probs=80.5
Q ss_pred CCCCCCcCCCCCCCCCCcchhhhcCCcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHH
Q psy7968 4 FAGEETASSATFSVEPVPDYHRIIGKPMDFGTIKHKLNMFQYRNNSEVLFDCNLVFDNCFAYNKEDSEIYEPTIKLNTFL 83 (91)
Q Consensus 4 ~~~~~~~F~~pv~~~~~p~Y~~~I~~PmdL~~I~~rl~~~~Y~s~~~f~~D~~li~~Na~~yn~~~s~~~~~a~~l~~~f 83 (91)
.+..+..|...++...+|+||.+|+.|+++..|.+++.++.|.+..+...|+.++|.||+.||..+|.++..|..|+..+
T Consensus 1044 ~r~~~~~~~~~~s~k~~~d~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~na~~~~~egs~~y~d~~~l~~~~ 1123 (1157)
T KOG0386|consen 1044 GRELSEVFLKLPSRKEYPDYYEIIKKPVAIDKIKKRIENHKYNSLKELEKDFMLLFNNARTYNEEGSRVYEDAIVLQSVF 1123 (1157)
T ss_pred ccccchhcccCcccccccchHHHhcchhhHHHHhhhccccccchHHHHHHHHHhhcchhhhhccCCceechhHHHHHHHH
Confidence 35678889999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHhh
Q psy7968 84 SCLCH 88 (91)
Q Consensus 84 e~~~~ 88 (91)
.....
T Consensus 1124 ~~~~~ 1128 (1157)
T KOG0386|consen 1124 KSARQ 1128 (1157)
T ss_pred hhhHH
Confidence 87665
No 48
>KOG0008|consensus
Probab=99.19 E-value=3.7e-11 Score=94.30 Aligned_cols=79 Identities=20% Similarity=0.262 Sum_probs=71.8
Q ss_pred CCCCcCCCCCCCCCCcchhhhcCCcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHH
Q psy7968 6 GEETASSATFSVEPVPDYHRIIGKPMDFGTIKHKLNMFQYRNNSEVLFDCNLVFDNCFAYNKEDSEIYEPTIKLNTFLS 84 (91)
Q Consensus 6 ~~~~~F~~pv~~~~~p~Y~~~I~~PmdL~~I~~rl~~~~Y~s~~~f~~D~~li~~Na~~yn~~~s~~~~~a~~l~~~fe 84 (91)
..+.||..||+..++++||.+|..||||.++++.+....|.+-++|..|+.+|++|..+||++.+.+...+..+....-
T Consensus 1277 ~~t~~f~~Pv~~k~v~dyy~vi~~P~~lq~~kk~v~kr~y~~r~~fle~~~~~~~ns~~yng~~~~~t~~~q~mls~~~ 1355 (1563)
T KOG0008|consen 1277 PNTYPFPTPVNAKEVKDYYRVITPPMDLQTQKKLVRKRLYESREHFLEELPLIVSNSTKYNGPLASLTRQQQSMLSLCF 1355 (1563)
T ss_pred CCCcCCCCccchhhccchhhccCCCcchHHHHHHHHHHHHHHHHHHHHHhHHHhhchhhhcCchHHHHHHHHHHHHHHH
Confidence 3568999999999999999999999999999999999999999999999999999999999999988887766554433
No 49
>KOG1828|consensus
Probab=98.78 E-value=5.7e-10 Score=78.78 Aligned_cols=76 Identities=24% Similarity=0.246 Sum_probs=70.7
Q ss_pred CCcCCCCCCCCCCcchhhhcCCcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHH
Q psy7968 8 ETASSATFSVEPVPDYHRIIGKPMDFGTIKHKLNMFQYRNNSEVLFDCNLVFDNCFAYNKEDSEIYEPTIKLNTFL 83 (91)
Q Consensus 8 ~~~F~~pv~~~~~p~Y~~~I~~PmdL~~I~~rl~~~~Y~s~~~f~~D~~li~~Na~~yn~~~s~~~~~a~~l~~~f 83 (91)
-+-|..||...-.|+|.++|+.|||+.+++.+++.+.|.+..++..|.+++..||..||..++.++.+|++|..+-
T Consensus 37 ~q~fafplt~~map~y~~iis~Pmd~~t~r~kidd~~yl~L~~m~~d~kl~~~na~~yn~~~Tv~~~aaKrL~~v~ 112 (418)
T KOG1828|consen 37 KQKFAFPLTDKMAPNYLEIISEPMDRITKRSKIDDTRYLVLSQMEFDRKLPDGNATLYNLHPTVPIVAAKRLCPVR 112 (418)
T ss_pred hhhhccccchhhccchHhhhhcccccccccccCCCccceechhhhhhhcccccchhhhhcCCccccccccccchhh
Confidence 3458889999999999999999999999999999999999999999999999999999999999999999886653
No 50
>KOG1474|consensus
Probab=98.68 E-value=6.3e-09 Score=78.33 Aligned_cols=83 Identities=23% Similarity=0.382 Sum_probs=75.1
Q ss_pred CCCCCcCCCCCCCC--CCcchhhhcCCcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHH
Q psy7968 5 AGEETASSATFSVE--PVPDYHRIIGKPMDFGTIKHKLNMFQYRNNSEVLFDCNLVFDNCFAYNKEDSEIYEPTIKLNTF 82 (91)
Q Consensus 5 ~~~~~~F~~pv~~~--~~p~Y~~~I~~PmdL~~I~~rl~~~~Y~s~~~f~~D~~li~~Na~~yn~~~s~~~~~a~~l~~~ 82 (91)
.+.+++|..||+.. ..|+|+..|.+|||+++|..++.++.|.+..+..+|+..+|.||..||.+...+..++..++..
T Consensus 7 ~~~~~~f~~~v~~v~l~~~~~~~~~~~~~d~~~~~~~~e~n~~~~~~~~~~~f~~~~sn~~~~~~~~~~v~~~~~~~~~~ 86 (640)
T KOG1474|consen 7 HKLAWPFLEPVDAVALNLPAYYEIIKRPMDIGTIEKRVENNYYFSASECIADFKTKFSNCYLFNDSGDDVVRMKQSLEKL 86 (640)
T ss_pred ccccccccCccchhhccchhhhcccCCCCCchhhhhhhccCccccHhhhhhhccccccchhcccCCccchhhccccchhh
Confidence 46789999999854 5789999999999999999999998899999999999999999999999999999999999888
Q ss_pred HHHHh
Q psy7968 83 LSCLC 87 (91)
Q Consensus 83 fe~~~ 87 (91)
+.+..
T Consensus 87 ~~~~~ 91 (640)
T KOG1474|consen 87 FPKKL 91 (640)
T ss_pred ccccc
Confidence 75443
No 51
>KOG1828|consensus
Probab=98.41 E-value=1.3e-07 Score=67.09 Aligned_cols=71 Identities=17% Similarity=0.090 Sum_probs=64.8
Q ss_pred cCCCCCCCCCCcchhhhcCCcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHH
Q psy7968 10 ASSATFSVEPVPDYHRIIGKPMDFGTIKHKLNMFQYRNNSEVLFDCNLVFDNCFAYNKEDSEIYEPTIKLNT 81 (91)
Q Consensus 10 ~F~~pv~~~~~p~Y~~~I~~PmdL~~I~~rl~~~~Y~s~~~f~~D~~li~~Na~~yn~~~s~~~~~a~~l~~ 81 (91)
-|..++....+|.|.-+|++|++..|+..+..++.|.| -+|..|..+|+.||.+||.++..++.+|+.+..
T Consensus 228 ~lnyg~tas~aP~YSm~Ik~~~~~~Tygdk~~andy~S-~~f~~D~kl~~l~amT~gehsk~yyelank~lh 298 (418)
T KOG1828|consen 228 YLNYGPTASFAPGYSMTITEVEPPGTYGDKSSANDYES-LSFTQDRKLIALKAVTNGEHSKSYYELANKQLH 298 (418)
T ss_pred hhcccchhhhcccccccccccCCCcchhhhhhhhhhhh-hhhhcccchhhHHHHhcCCcchHHHHHHHhhhh
Confidence 35667777889999999999999999999999999999 899999999999999999999999998887654
No 52
>cd05493 Bromo_ALL-1 Bromodomain, ALL-1 like proteins. ALL-1 is a vertebrate homologue of Drosophila trithorax and is often affected in chromosomal rearrangements that are linked to acute leukemias, such as acute lymphocytic leukemia (ALL). Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=98.09 E-value=1.1e-05 Score=49.97 Aligned_cols=59 Identities=17% Similarity=0.213 Sum_probs=49.0
Q ss_pred cCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhh
Q psy7968 30 PMDFGTIKHKLNMFQYRNNSEVLFDCNLVFDNCFAYNKEDSEIYEPTIKLNTFLSCLCH 88 (91)
Q Consensus 30 PmdL~~I~~rl~~~~Y~s~~~f~~D~~li~~Na~~yn~~~s~~~~~a~~l~~~fe~~~~ 88 (91)
|.||..|+++++.|.|.|+.+|.+||-.|+.-+..-.+...++-++...++-+|.+.++
T Consensus 59 p~dL~~V~kkl~~G~Y~sv~~F~~DvvkIiqa~l~~e~~~pe~~ka~s~~Ksf~ik~me 117 (131)
T cd05493 59 PLDLEAVGKKLEAGFYTSVLDFSDDIVKIIQAALNSEGGQPEIKKANSMAKSFFIKLME 117 (131)
T ss_pred cccHHHHHHHHhccceehHHHHHHHHHHHHHHHHhhccCCccccCcchHHHHHHHHHHH
Confidence 89999999999999999999999999999999987766666666665666666666654
No 53
>COG5076 Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription]
Probab=98.05 E-value=1.4e-06 Score=61.90 Aligned_cols=84 Identities=32% Similarity=0.421 Sum_probs=77.4
Q ss_pred CCCCCcCCCCCCCCCCcchhhhcCCcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHH
Q psy7968 5 AGEETASSATFSVEPVPDYHRIIGKPMDFGTIKHKLNMFQYRNNSEVLFDCNLVFDNCFAYNKEDSEIYEPTIKLNTFLS 84 (91)
Q Consensus 5 ~~~~~~F~~pv~~~~~p~Y~~~I~~PmdL~~I~~rl~~~~Y~s~~~f~~D~~li~~Na~~yn~~~s~~~~~a~~l~~~fe 84 (91)
...++++..+++....|+|++.+..++++++.+.++..+.|...+++..|..++++||..+|+.....++.+..+...+.
T Consensus 278 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (371)
T COG5076 278 HVGAWPFLRPVSDEEVPDYYKDIRDPMDLSTKELKLRNNYYRPEETFVRDAKLFFDNCVMYNGEVTDYYKNANVLEDFVI 357 (371)
T ss_pred ccccccccccCCcccccchhhhhhcccccccchhhhhcccCCCccccccccchhhhcccccchhhhhhhhhccchhhhHh
Confidence 34578999999999999999999999999999999999999999999999999999999999999999998888888877
Q ss_pred HHhh
Q psy7968 85 CLCH 88 (91)
Q Consensus 85 ~~~~ 88 (91)
....
T Consensus 358 ~~~~ 361 (371)
T COG5076 358 KKTR 361 (371)
T ss_pred hhhh
Confidence 6554
No 54
>KOG0644|consensus
Probab=97.54 E-value=9.6e-05 Score=57.27 Aligned_cols=65 Identities=12% Similarity=0.222 Sum_probs=56.1
Q ss_pred hhhhcCCcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHh
Q psy7968 23 YHRIIGKPMDFGTIKHKLNMFQYRNNSEVLFDCNLVFDNCFAYNKEDSEIYEPTIKLNTFLSCLC 87 (91)
Q Consensus 23 Y~~~I~~PmdL~~I~~rl~~~~Y~s~~~f~~D~~li~~Na~~yn~~~s~~~~~a~~l~~~fe~~~ 87 (91)
|..--.-|.+++.|+.||++..|++.+.+..|+-.|.+||.+|.+.+..+-..+..|...|.+-+
T Consensus 1046 ~~~~fpvpls~evi~~rlEn~yYrs~e~~~hdvs~mlsnae~~fg~~~~~~~ki~~l~~~~~~Tl 1110 (1113)
T KOG0644|consen 1046 VDNRFPVPLSLEVIRSRLENNYYRSQEALRHDVSVMLSNAETFFGRNKNVAIKISFLSPWFDRTL 1110 (1113)
T ss_pred cCCCCCCcccHHHHHHHHHhhhhhhhHhhhcchhhhhcccceeecccccHHHHhhhcchhhhhhc
Confidence 55567789999999999999999999999999999999999999988777666777777765543
No 55
>KOG0732|consensus
Probab=94.92 E-value=0.017 Score=46.36 Aligned_cols=63 Identities=14% Similarity=-0.029 Sum_probs=55.9
Q ss_pred CCCcCCCCCCCCC-----CcchhhhcCCcCCHHHHHHHHhcCCCCCHHHHHH--HHHHHHHHHhhhcCCC
Q psy7968 7 EETASSATFSVEP-----VPDYHRIIGKPMDFGTIKHKLNMFQYRNNSEVLF--DCNLVFDNCFAYNKED 69 (91)
Q Consensus 7 ~~~~F~~pv~~~~-----~p~Y~~~I~~PmdL~~I~~rl~~~~Y~s~~~f~~--D~~li~~Na~~yn~~~ 69 (91)
.+..|..|++... .++|...|+++||+...-.++..+.|.++.++.. ++.+||.|+..+|++.
T Consensus 532 ~~~~~s~Pl~~~~~~ll~~~~~~~~iq~~~~va~~~~k~~e~~~~~v~~~e~~~~i~lic~~~lli~~~~ 601 (1080)
T KOG0732|consen 532 SSVIFSRPLSTYLKPLLPFQDALEDIQGLMDVASSMAKIEEHLKLLVRSFESNFAIRLICRPRLLINGGK 601 (1080)
T ss_pred cccCCCCCCCcceecccchHHHHHHhhcchhHHhhhhhHHHHhHHHHHhhhcccchhhhcCcHHhcCCCc
Confidence 3566888886543 4589999999999999999999999999999999 9999999999999876
No 56
>KOG0644|consensus
Probab=91.43 E-value=0.073 Score=42.04 Aligned_cols=72 Identities=13% Similarity=0.097 Sum_probs=57.1
Q ss_pred cCCCCCCCCCCcchhhhcCCcCCHHHHHHHHhcCCC--------------C----------CHHH------HHHHHHHHH
Q psy7968 10 ASSATFSVEPVPDYHRIIGKPMDFGTIKHKLNMFQY--------------R----------NNSE------VLFDCNLVF 59 (91)
Q Consensus 10 ~F~~pv~~~~~p~Y~~~I~~PmdL~~I~~rl~~~~Y--------------~----------s~~~------f~~D~~li~ 59 (91)
.|.-+++....|-|+.+...|.+|++++.+|.+..| . ++.+ ..+-+..|-
T Consensus 85 qlv~~~d~~~pp~~~~~a~vpTlLgtg~qsLl~r~k~~~~~~~~~s~~~~~h~~~~~~~~~sl~s~~~~~~~h~~a~~i~ 164 (1113)
T KOG0644|consen 85 QLVPMLDKPIPPRYCTIARVPTLLGTGRQSLLRRAKDIRHTVWKGSAFRWPHMHADQVRGVSLRSIGGGFEIHHRAPSIG 164 (1113)
T ss_pred HhccCcCCCCCcceeeeecccchhcchhHHHHhhhhhcccccccccccccccccCcccccceeccCCcchhhhhcCcccc
Confidence 355677888899999999999999999999998776 2 3333 677888999
Q ss_pred HHHhhhcCCCCHHHHHHHHHHHH
Q psy7968 60 DNCFAYNKEDSEIYEPTIKLNTF 82 (91)
Q Consensus 60 ~Na~~yn~~~s~~~~~a~~l~~~ 82 (91)
+||..++.|++ +++-++...++
T Consensus 165 ~at~~~akPgt-mvqkmk~ikrL 186 (1113)
T KOG0644|consen 165 CATFSIAKPGT-MVQKMKNIKRL 186 (1113)
T ss_pred cceeeecCcHH-HHHHHHHHHHH
Confidence 99999999999 55555555544
No 57
>TIGR02606 antidote_CC2985 putative addiction module antidote protein, CC2985 family. This bacterial protein family has a very similar seed alignment to that of Pfam model pfam03693 but is a more stringent model with higher cutoff scores. Proteins that score above the trusted cutoff to this model almost invariably are found adjacent to a ParE family protein (pfam05016), where ParE is the killing partner of an addiction module for plasmid stabilization. Members of this family, therefore, are putative addiction module antidote proteins. Some are encoded on plasmids or in prophage regions, but others appear chromosomal. A genome may contain several identical copies, such as the four in Magnetococcus sp. MC-1. This family is named for one member, CC2985 of Caulobacter crescentus CB15.
Probab=90.99 E-value=0.65 Score=25.52 Aligned_cols=28 Identities=18% Similarity=0.254 Sum_probs=24.8
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHH
Q psy7968 34 GTIKHKLNMFQYRNNSEVLFDCNLVFDN 61 (91)
Q Consensus 34 ~~I~~rl~~~~Y~s~~~f~~D~~li~~N 61 (91)
..|+..+..|.|.|.+++++|..+++.-
T Consensus 12 ~~i~~~V~sG~Y~s~SEVir~aLR~le~ 39 (69)
T TIGR02606 12 SFIRSQVQSGRYGSASEVVRAALRLLEE 39 (69)
T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHH
Confidence 5689999999999999999999887754
No 58
>PF14372 DUF4413: Domain of unknown function (DUF4413)
Probab=89.61 E-value=2.8 Score=24.53 Aligned_cols=48 Identities=13% Similarity=0.169 Sum_probs=40.2
Q ss_pred CCCCCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhhhc
Q psy7968 43 FQYRNNSEVLFDCNLVFDNCFAYNKEDSEIYEPTIKLNTFLSCLCHLC 90 (91)
Q Consensus 43 ~~Y~s~~~f~~D~~li~~Na~~yn~~~s~~~~~a~~l~~~fe~~~~~~ 90 (91)
..|.|...+...+..|-......+..+..+..+|..+.+.|++.|+.+
T Consensus 4 ~~~pTsn~~f~~i~~i~~~l~~~~~~d~~l~~ma~~M~~KfdKYw~~~ 51 (101)
T PF14372_consen 4 SSYPTSNLYFHEIWKIKDLLRDWNNDDPDLKNMAKKMKEKFDKYWKDC 51 (101)
T ss_pred CCcCcHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHh
Confidence 457788888888888888777777777888899999999999999854
No 59
>PF03693 RHH_2: Uncharacterised protein family (UPF0156); InterPro: IPR022789 This family of proteins are about 80 amino acids in length and their function is unknown. The proteins contain a conserved GRY motif. This family appears to be related to ribbon-helix-helix DNA-binding proteins. ; PDB: 3KXE_C.
Probab=87.01 E-value=1.3 Score=25.05 Aligned_cols=27 Identities=19% Similarity=0.277 Sum_probs=22.5
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHH
Q psy7968 34 GTIKHKLNMFQYRNNSEVLFDCNLVFD 60 (91)
Q Consensus 34 ~~I~~rl~~~~Y~s~~~f~~D~~li~~ 60 (91)
.-|+.++..|.|.|.+++++|.-.++.
T Consensus 15 ~~i~~~V~sG~Y~s~SEvvR~aLRlle 41 (80)
T PF03693_consen 15 AFIEEQVASGRYSSASEVVREALRLLE 41 (80)
T ss_dssp HHHHHHHCTTS-SSHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 458999999999999999999776664
No 60
>KOG1827|consensus
Probab=85.57 E-value=0.071 Score=40.71 Aligned_cols=74 Identities=12% Similarity=-0.161 Sum_probs=65.1
Q ss_pred CCcCCCCCCCCCCcchhhhcCCcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHH
Q psy7968 8 ETASSATFSVEPVPDYHRIIGKPMDFGTIKHKLNMFQYRNNSEVLFDCNLVFDNCFAYNKEDSEIYEPTIKLNT 81 (91)
Q Consensus 8 ~~~F~~pv~~~~~p~Y~~~I~~PmdL~~I~~rl~~~~Y~s~~~f~~D~~li~~Na~~yn~~~s~~~~~a~~l~~ 81 (91)
...|-..++....|+|+.+++-||-++...+++..+.|.....+..|....+.|+..|+....-++..+..+.+
T Consensus 213 Ier~w~~~dg~k~~~~~w~~rP~~T~H~a~r~F~k~Evfkt~~~~~~~~q~l~g~c~v~~~~~yi~~~p~~ls~ 286 (629)
T KOG1827|consen 213 IERLWKLPDGEKWPQGCWIYRPEETVHRADRKFYKQEVFKTSLYRDDLVQRLLGKCYVMKPTEYISGDPENLSE 286 (629)
T ss_pred ecccccCcccccccceeEeeCCccCccccccchhcccceecccccccHHHHhhcceEEeehhHhhhcCcccccc
Confidence 34566667888999999999999999999999999999999999999999999999999988887777666544
No 61
>PF08134 cIII: cIII protein family; InterPro: IPR012995 This family consists of the CIII family of regulatory proteins. The lambda CIII protein has 54 amino acids and it forms an amphipathic helix within its amino acid sequence. Lambda CIII stabilises the lambda CII protein and the host sigma factor 32, responsible for transcribing genes of the heat shock regulon [].
Probab=77.66 E-value=4.4 Score=20.00 Aligned_cols=27 Identities=26% Similarity=0.308 Sum_probs=17.3
Q ss_pred hhcCCCCHHHHHHHHHHHHHHHHhh-hc
Q psy7968 64 AYNKEDSEIYEPTIKLNTFLSCLCH-LC 90 (91)
Q Consensus 64 ~yn~~~s~~~~~a~~l~~~fe~~~~-~~ 90 (91)
.|++..|+..+-.++|-....++++ +|
T Consensus 14 AyYP~ESELskr~rrLIRaa~k~lealc 41 (44)
T PF08134_consen 14 AYYPTESELSKRIRRLIRAARKQLEALC 41 (44)
T ss_pred eecCcHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3666677777666666666666665 44
No 62
>PRK10991 fucI L-fucose isomerase; Provisional
Probab=64.56 E-value=15 Score=28.31 Aligned_cols=48 Identities=13% Similarity=0.227 Sum_probs=40.3
Q ss_pred CCCCCcchhhhcCCcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhh
Q psy7968 16 SVEPVPDYHRIIGKPMDFGTIKHKLNMFQYRNNSEVLFDCNLVFDNCFA 64 (91)
Q Consensus 16 ~~~~~p~Y~~~I~~PmdL~~I~~rl~~~~Y~s~~~f~~D~~li~~Na~~ 64 (91)
+...+-+|.-+--.++|+..|.+|++.+.|.. +++...+..+-+||..
T Consensus 191 ne~~l~~~fGI~ve~VDmsEIirR~~~~~~d~-eE~e~al~wlk~~~~~ 238 (588)
T PRK10991 191 DHNFFESYLGMRVEAVDMTELRRRIDQKIYDE-EELEMALAWAKKNCKE 238 (588)
T ss_pred CHHHHHHHhCCEEEEeCHHHHHHHHHhccCCH-HHHHHHHHHHHHhccc
Confidence 44455677777889999999999999999987 6999999999999864
No 63
>PF07882 Fucose_iso_N2: L-fucose isomerase, second N-terminal domain; InterPro: IPR012889 Proteins containing this domain are similar to L-fucose isomerase expressed by Escherichia coli (P11552 from SWISSPROT, 5.3.1.3 from EC). This enzyme corresponds to glucose-6-phosphate isomerase in glycolysis, and converts an aldo-hexose to a ketose to prepare it for aldol cleavage. The enzyme is a hexamer, with each subunit being wedge-shaped and composed of three domains. Both domains 1 and 2 contain central parallel beta- sheets with surrounding alpha helices. The active centre is shared between pairs of subunits related along the molecular three-fold axis, with domains 2 and 3 from one subunit providing most of the substrate-contacting residues []. ; GO: 0008736 L-fucose isomerase activity, 0006004 fucose metabolic process, 0005737 cytoplasm; PDB: 3A9R_A 3A9T_C 3A9S_C 1FUI_E.
Probab=63.47 E-value=4.3 Score=26.54 Aligned_cols=50 Identities=16% Similarity=0.181 Sum_probs=35.0
Q ss_pred CCcchhhhcCCcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhcCCC
Q psy7968 19 PVPDYHRIIGKPMDFGTIKHKLNMFQYRNNSEVLFDCNLVFDNCFAYNKED 69 (91)
Q Consensus 19 ~~p~Y~~~I~~PmdL~~I~~rl~~~~Y~s~~~f~~D~~li~~Na~~yn~~~ 69 (91)
...+|.-+=..-+|...|.+|++.+.|. .++|.+-+..+=+||..+.+..
T Consensus 22 f~~~ylGmr~E~VD~~Ei~RR~e~~iyD-~~E~e~A~~W~~~~~~~g~d~n 71 (181)
T PF07882_consen 22 FFQEYLGMRVEYVDMSEIIRRMEEGIYD-EEEFEKALAWVKENCKEGDDKN 71 (181)
T ss_dssp HHHHCT--EEEEE-THHHHHHHHCT-S--HHHHHHHHHHHHHHSEE---TS
T ss_pred HHHHHhCCCceeecHHHHHHHHHccCCC-HHHHHHHHHHHHHhCCcCCCCC
Confidence 3344666666779999999999999997 4899999999999999776544
No 64
>PF14056 DUF4250: Domain of unknown function (DUF4250)
Probab=61.44 E-value=16 Score=19.27 Aligned_cols=24 Identities=25% Similarity=0.419 Sum_probs=19.5
Q ss_pred CCHHHHHHHHhcCCCCCHHHHHHHH
Q psy7968 31 MDFGTIKHKLNMFQYRNNSEVLFDC 55 (91)
Q Consensus 31 mdL~~I~~rl~~~~Y~s~~~f~~D~ 55 (91)
|=|+.|-.+|+. .|.|.++++.|.
T Consensus 7 mLlS~VN~kLRD-~~~sLd~Lc~~~ 30 (55)
T PF14056_consen 7 MLLSIVNMKLRD-EYSSLDELCYDY 30 (55)
T ss_pred HHHHHHHHHHHh-ccCCHHHHHHHh
Confidence 457788888866 899999998876
No 65
>COG3609 Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain [Transcription]
Probab=59.55 E-value=26 Score=19.99 Aligned_cols=29 Identities=17% Similarity=0.159 Sum_probs=24.0
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Q psy7968 33 FGTIKHKLNMFQYRNNSEVLFDCNLVFDN 61 (91)
Q Consensus 33 L~~I~~rl~~~~Y~s~~~f~~D~~li~~N 61 (91)
...|...++.|.|.|.++++++--..+.-
T Consensus 14 ~~~i~~lV~~G~y~s~SeviR~alr~l~~ 42 (89)
T COG3609 14 VEFIDELVESGRYKSRSEVIRAALRLLLE 42 (89)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 36788999999999999999987666554
No 66
>PF10491 Nrf1_DNA-bind: NLS-binding and DNA-binding and dimerisation domains of Nrf1; InterPro: IPR019525 Nuclear respiratory factor-1 is a transcriptional activator that has been implicated in the nuclear control of respiratory chain expression in vertebrates. The first 26 amino acids of nuclear respiratory factor-1 are required for the binding of dynein light chain. The interaction with dynein light chain is observed for both ewg and Nrf-1, transcription factors that are structurally and functionally similar between humans and Drosophila []. In Drosophila, the erect wing (ewg) protein is required for proper development of the central nervous system and the indirect flight muscles. The fly ewg gene encodes a novel DNA-binding domain that is also found in four genes previously identified in sea urchin, chicken, zebrafish, and human []. The highest level of expression of both ewg and Nrf-1 was found in the central nervous system, somites, first branchial arch, optic vesicle, and otic vesicle. In the mouse Nrf-1 protein, Q8C4C0 from SWISSPROT, there is also an NLS domain at 88-116, and a DNA binding and dimerisation domain at 127-282. Ewg is a site-specific transcriptional activator, and evolutionarily conserved regions of ewg contribute both positively and negatively to transcriptional activity [].
Probab=55.26 E-value=20 Score=24.12 Aligned_cols=21 Identities=14% Similarity=0.392 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHhhhcCCC
Q psy7968 49 SEVLFDCNLVFDNCFAYNKED 69 (91)
Q Consensus 49 ~~f~~D~~li~~Na~~yn~~~ 69 (91)
..+..-++.|+.||.+|++..
T Consensus 185 vsWt~aLR~IV~nCYk~Hgre 205 (214)
T PF10491_consen 185 VSWTQALRTIVKNCYKYHGRE 205 (214)
T ss_pred ccHHHHHHHHHHHHHHHhcHH
Confidence 378899999999999999953
No 67
>KOG0732|consensus
Probab=54.50 E-value=4.7 Score=33.09 Aligned_cols=59 Identities=12% Similarity=0.137 Sum_probs=45.9
Q ss_pred CCCCCCCCCCcchhhhcCCc--CCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhcCCC
Q psy7968 11 SSATFSVEPVPDYHRIIGKP--MDFGTIKHKLNMFQYRNNSEVLFDCNLVFDNCFAYNKED 69 (91)
Q Consensus 11 F~~pv~~~~~p~Y~~~I~~P--mdL~~I~~rl~~~~Y~s~~~f~~D~~li~~Na~~yn~~~ 69 (91)
+.++.....+.++...+..| |++..+.+|+..|.|.++.+|..|..+|..||..+..++
T Consensus 789 ~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~r~~s~~~~~~~q~l~d~~li~r~a~~~~~~~ 849 (1080)
T KOG0732|consen 789 PKEECQYESSDNVVKILQINQMDWLEEILKRVWSGEYSTPKQFLSDIKLILRDASSSEDSE 849 (1080)
T ss_pred ccCCccccccccceeehhhhhhHHHHHHhhcCCcccccccccccccchhhcccchhccCch
Confidence 34444455566677766665 566678999999999999999999999999999887654
No 68
>TIGR01089 fucI L-fucose isomerase. This enzyme catalyzes the first step in fucose metabolism, and has been characterized in Escherichia coli and Bacteroides thetaiotaomicron.
Probab=38.49 E-value=61 Score=25.16 Aligned_cols=48 Identities=13% Similarity=0.222 Sum_probs=39.0
Q ss_pred CCCCCcchhhhcCCcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhh
Q psy7968 16 SVEPVPDYHRIIGKPMDFGTIKHKLNMFQYRNNSEVLFDCNLVFDNCFA 64 (91)
Q Consensus 16 ~~~~~p~Y~~~I~~PmdL~~I~~rl~~~~Y~s~~~f~~D~~li~~Na~~ 64 (91)
+.....+|.-+=-.-+|+..|.+|++.+.|. .+++.+.+..+-+||..
T Consensus 190 d~~f~q~~lGmrvE~vD~~EivrR~~~~iyd-~eE~e~Al~W~~~~~~~ 237 (587)
T TIGR01089 190 NHNFFQEYLGMRNEAVDMTEIRRRIDQKIYD-EEELEMALAWADKYCKY 237 (587)
T ss_pred CHHHHHHHhCCeeEEecHHHHHHHHhccCCC-HHHHHHHHHHHHHhccc
Confidence 4444456666667789999999999999997 56999999999999954
No 69
>KOG3740|consensus
Probab=38.28 E-value=27 Score=27.34 Aligned_cols=36 Identities=22% Similarity=0.287 Sum_probs=28.7
Q ss_pred HHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhh
Q psy7968 53 FDCNLVFDNCFAYNKEDSEIYEPTIKLNTFLSCLCH 88 (91)
Q Consensus 53 ~D~~li~~Na~~yn~~~s~~~~~a~~l~~~fe~~~~ 88 (91)
+|...|++||.+-|.+...-.....+|+..|.+.+.
T Consensus 484 ~d~~i~cE~cvtSnqkkAlK~ehT~rLKrAfvKalq 519 (706)
T KOG3740|consen 484 ADAAIVCENCVTSNQKKALKVEHTNRLKRAFVKALQ 519 (706)
T ss_pred cchHHHHHhhhhhcccccccccchHHHHHHHHHHHH
Confidence 488999999999999887766667777777766553
No 70
>PF04282 DUF438: Family of unknown function (DUF438); InterPro: IPR007380 This is a a group of uncharacterised proteins.
Probab=36.87 E-value=65 Score=17.83 Aligned_cols=28 Identities=18% Similarity=0.243 Sum_probs=21.4
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Q psy7968 33 FGTIKHKLNMFQYRNNSEVLFDCNLVFDNC 62 (91)
Q Consensus 33 L~~I~~rl~~~~Y~s~~~f~~D~~li~~Na 62 (91)
|..|-.||.+|. ++++...++...|.+.
T Consensus 2 LK~ii~~Lh~G~--~~e~vk~~F~~~~~~V 29 (71)
T PF04282_consen 2 LKEIIKRLHEGE--DPEEVKEEFKKLFSDV 29 (71)
T ss_pred HHHHHHHHhCCC--CHHHHHHHHHHHHCCC
Confidence 566778888884 8888888888777654
No 71
>cd03556 L-fucose_isomerase L-fucose isomerase (FucIase); FucIase converts L-fucose, an aldohexose, to its ketose form, which prepares it for aldol cleavage (similar to the isomerization of glucose during glycolysis). L-fucose (or 6-deoxy-L-galactose) is found in blood group determinants as well as in various oligo- and polysaccharides, and glycosides in mammals, bacteria and plants.
Probab=36.54 E-value=53 Score=25.43 Aligned_cols=47 Identities=15% Similarity=0.160 Sum_probs=38.3
Q ss_pred CCCCCcchhhhcCCcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHh
Q psy7968 16 SVEPVPDYHRIIGKPMDFGTIKHKLNMFQYRNNSEVLFDCNLVFDNCF 63 (91)
Q Consensus 16 ~~~~~p~Y~~~I~~PmdL~~I~~rl~~~~Y~s~~~f~~D~~li~~Na~ 63 (91)
+.....+|.-+=-.-+|+..|.+|++.+.|. .+++.+.+..+-+||.
T Consensus 187 d~~f~q~~lGmrvE~vD~~EivrR~~~~iyd-~eE~e~Al~W~~~~~~ 233 (584)
T cd03556 187 DPNFFEEYLGMRVESVDMTEIIRRMDEEIYD-PEEYEKALAWTKENCK 233 (584)
T ss_pred CHHHHHHHhCCeeEEecHHHHHHHHhccCCC-HHHHHHHHHHHHHhcc
Confidence 3344456666667789999999999999997 5699999999999996
No 72
>KOG0506|consensus
Probab=34.19 E-value=1.4e+02 Score=23.07 Aligned_cols=38 Identities=11% Similarity=0.169 Sum_probs=30.8
Q ss_pred CHHHHHHHHhcCC-CCCHHHHHHHHHHHHHHHhhhcCCC
Q psy7968 32 DFGTIKHKLNMFQ-YRNNSEVLFDCNLVFDNCFAYNKED 69 (91)
Q Consensus 32 dL~~I~~rl~~~~-Y~s~~~f~~D~~li~~Na~~yn~~~ 69 (91)
++..|-+-|+.+. ..+..+|..+++.||+-|+..++.+
T Consensus 159 SI~lvSqALrkqmVIPdw~~Fts~I~tIFEscke~seG~ 197 (622)
T KOG0506|consen 159 SIVLVSQALRKQMVIPDWEEFTSHIDTIFESCKESSEGK 197 (622)
T ss_pred chhHHHHHHhcCccCCcHHHHHHHHHHHHHHHHhcCCcc
Confidence 4455667776655 5799999999999999999998866
No 73
>PRK03972 ribosomal biogenesis protein; Validated
Probab=32.43 E-value=30 Score=23.23 Aligned_cols=30 Identities=17% Similarity=0.180 Sum_probs=24.2
Q ss_pred CHHHHHHHHHHHHHHHhhhcCCCCHHHHHH
Q psy7968 47 NNSEVLFDCNLVFDNCFAYNKEDSEIYEPT 76 (91)
Q Consensus 47 s~~~f~~D~~li~~Na~~yn~~~s~~~~~a 76 (91)
..-+|++|+.++|=||..+|..+..+-+.+
T Consensus 13 rtr~F~keL~~v~Pns~~i~RGk~~lkel~ 42 (208)
T PRK03972 13 RTRSFGHDLERVFPNSLYLTRGKKTIQDLL 42 (208)
T ss_pred HHHHHHHHHHHhCCCCEEEecCCccHHHHH
Confidence 456899999999999999998776655543
No 74
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=31.82 E-value=1.3e+02 Score=20.78 Aligned_cols=33 Identities=12% Similarity=0.218 Sum_probs=27.9
Q ss_pred CCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHh
Q psy7968 31 MDFGTIKHKLNMFQYRNNSEVLFDCNLVFDNCF 63 (91)
Q Consensus 31 mdL~~I~~rl~~~~Y~s~~~f~~D~~li~~Na~ 63 (91)
-+|+.|-....+|.|++.++|.+.+-.-+.++.
T Consensus 149 ~~La~il~~ya~~~fr~~~dfl~~v~~~l~~~f 181 (262)
T PF14225_consen 149 PNLARILSSYAKGRFRDKDDFLSQVVSYLREAF 181 (262)
T ss_pred ccHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHh
Confidence 488999999999999999999998876666543
No 75
>COG3355 Predicted transcriptional regulator [Transcription]
Probab=30.12 E-value=85 Score=19.38 Aligned_cols=37 Identities=19% Similarity=0.088 Sum_probs=28.2
Q ss_pred hhhhcCCcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHh
Q psy7968 23 YHRIIGKPMDFGTIKHKLNMFQYRNNSEVLFDCNLVFDNCF 63 (91)
Q Consensus 23 Y~~~I~~PmdL~~I~~rl~~~~Y~s~~~f~~D~~li~~Na~ 63 (91)
-|..|-.|+|...+++.+.. .+.++..+|...+.+..
T Consensus 83 gy~yiY~~i~~ee~k~~i~~----~l~~w~~~~~~~i~~~~ 119 (126)
T COG3355 83 GYYYLYKPIDPEEIKKKILK----DLDEWYDKMKQLIEEFE 119 (126)
T ss_pred ceeEEEecCCHHHHHHHHHH----HHHHHHHHHHHHHHHHh
Confidence 34566778898888888887 78888888887776643
No 76
>KOG4086|consensus
Probab=29.85 E-value=21 Score=21.91 Aligned_cols=18 Identities=17% Similarity=0.484 Sum_probs=15.6
Q ss_pred CcchhhhcCCcCCHHHHH
Q psy7968 20 VPDYHRIIGKPMDFGTIK 37 (91)
Q Consensus 20 ~p~Y~~~I~~PmdL~~I~ 37 (91)
-|+|...|..|+||..+.
T Consensus 59 ~PeYak~l~YP~CL~mLe 76 (130)
T KOG4086|consen 59 EPEYAKFLKYPQCLHMLE 76 (130)
T ss_pred CccHHHHHhhHhHHHHHH
Confidence 389999999999998754
No 77
>PF04316 FlgM: Anti-sigma-28 factor, FlgM; InterPro: IPR007412 FlgM binds and inhibits the activity of the transcription factor sigma 28. Inhibition of sigma 28 prevents the expression of genes from flagellar transcriptional class 3, which include genes for the filament and chemotaxis. Correctly assembled basal body-hook structures export FlgM, relieving inhibition of sigma 28 and allowing expression of class 3 genes. NMR studies show that free FlgM is mostly unfolded, which may facilitate its export. The C-terminal half of FlgM adopts a tertiary structure when it binds to sigma 28. All mutations in FlgM that prevent sigma 28 inhibition affect the C-terminal domain and is the region thought to constitute the binding domain. A minimal binding domain has been identified between Glu 64 and Arg 88 in Salmonella typhimurium (P26477 from SWISSPROT).The N-terminal portion remains unstructured and may be necessary for recognition by the export machinery [].; GO: 0045892 negative regulation of transcription, DNA-dependent, 0019861 flagellum; PDB: 1RP3_B 1SC5_B.
Probab=29.75 E-value=44 Score=17.27 Aligned_cols=19 Identities=16% Similarity=0.340 Sum_probs=10.9
Q ss_pred HHHHHHHHhcCCCC-CHHHH
Q psy7968 33 FGTIKHKLNMFQYR-NNSEV 51 (91)
Q Consensus 33 L~~I~~rl~~~~Y~-s~~~f 51 (91)
...|+..+.+|.|. +.+..
T Consensus 30 V~~ik~~I~~G~Y~vd~~~i 49 (57)
T PF04316_consen 30 VAEIKAAIASGTYKVDAEKI 49 (57)
T ss_dssp HHHHHHHHHTT-----HHHH
T ss_pred HHHHHHHHHcCCCCCCHHHH
Confidence 46789999999997 44333
No 78
>PRK00630 nickel responsive regulator; Provisional
Probab=28.29 E-value=97 Score=19.55 Aligned_cols=25 Identities=16% Similarity=0.227 Sum_probs=21.2
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHH
Q psy7968 33 FGTIKHKLNMFQYRNNSEVLFDCNL 57 (91)
Q Consensus 33 L~~I~~rl~~~~Y~s~~~f~~D~~l 57 (91)
|..+.+.+..+.|.|-+++++|+-+
T Consensus 22 l~~lD~~~~~~gy~sRSe~Ir~~iR 46 (148)
T PRK00630 22 LDELDNRIIKNGYSSRSELVRDLIR 46 (148)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 5677788888899999999999944
No 79
>PF02901 PFL: Pyruvate formate lyase; InterPro: IPR004184 Pyruvate formate-lyase 2.3.1.54 from EC (also known as formate C-acetyltransferase) is an enzyme which converts acetyl-CoA and formate to CoA and pyruvate. Acetyl-CoA + formate = CoA + pyruvate In Escherichia coli, it uses a radical mechanism to reversibly cleave the C1-C2 bond of pyruvate using the Gly 734 radical and two cysteine residues (Cys 418, Cys 419) [].; GO: 0008861 formate C-acetyltransferase activity, 0006006 glucose metabolic process, 0005737 cytoplasm; PDB: 1QHM_A 1MZO_B 3PFL_B 1H18_A 2PFL_A 1CM5_B 1H16_A 1H17_A 1R9E_A 1R8W_A ....
Probab=28.05 E-value=2.1e+02 Score=22.46 Aligned_cols=56 Identities=13% Similarity=0.036 Sum_probs=37.1
Q ss_pred CcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhhh
Q psy7968 29 KPMDFGTIKHKLNMFQYRNNSEVLFDCNLVFDNCFAYNKEDSEIYEPTIKLNTFLSCLCHL 89 (91)
Q Consensus 29 ~PmdL~~I~~rl~~~~Y~s~~~f~~D~~li~~Na~~yn~~~s~~~~~a~~l~~~fe~~~~~ 89 (91)
+.+.+..+.+-|+.+.=.. .+++.++.||-+|-.++..+=..|.++...+-+.++.
T Consensus 570 k~~T~~eL~~Al~~nfeg~-----E~lr~~l~~~PKyGNDd~~aD~ia~~v~~~~~~~~~~ 625 (648)
T PF02901_consen 570 KKYTMEELLDALKANFEGY-----EELRQMLLNAPKYGNDDDYADEIAREVYDFFCDEVEK 625 (648)
T ss_dssp CSSEHHHHHHHHHTTTTTE-----HHHHHHHHHS--TTSS-HHHHHHHHHHHHHHHHHHTT
T ss_pred CCccHHHHHHHHHhcCCch-----HHHHHHccCCCCCCCCChHHHHHHHHHHHHHHHHHhc
Confidence 3445555555555433111 6889999999899887788888999999988887763
No 80
>PF14237 DUF4339: Domain of unknown function (DUF4339)
Probab=25.23 E-value=91 Score=15.06 Aligned_cols=19 Identities=5% Similarity=0.197 Sum_probs=16.0
Q ss_pred CCcCCHHHHHHHHhcCCCC
Q psy7968 28 GKPMDFGTIKHKLNMFQYR 46 (91)
Q Consensus 28 ~~PmdL~~I~~rl~~~~Y~ 46 (91)
..|+++..|++.+.+|...
T Consensus 11 ~GP~s~~el~~l~~~g~i~ 29 (45)
T PF14237_consen 11 QGPFSLEELRQLISSGEID 29 (45)
T ss_pred ECCcCHHHHHHHHHcCCCC
Confidence 4699999999999988754
No 81
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=24.87 E-value=73 Score=17.51 Aligned_cols=16 Identities=6% Similarity=0.029 Sum_probs=12.9
Q ss_pred CCCCHHHHHHHHHHHH
Q psy7968 44 QYRNNSEVLFDCNLVF 59 (91)
Q Consensus 44 ~Y~s~~~f~~D~~li~ 59 (91)
...+.+++++|+..++
T Consensus 63 ~~~~~~~~v~D~~~~~ 78 (79)
T PF12146_consen 63 HIDSFDDYVDDLHQFI 78 (79)
T ss_pred ccCCHHHHHHHHHHHh
Confidence 3568899999998775
No 82
>PF11860 DUF3380: Protein of unknown function (DUF3380); InterPro: IPR024408 Proteins in this entry including lysozyme from Enterobacteria phage PRD1 [, ].
Probab=24.13 E-value=79 Score=20.57 Aligned_cols=43 Identities=14% Similarity=0.063 Sum_probs=28.7
Q ss_pred CCCCCHHHHHHHHH------------HHH---------------HHHhhhcCCCCHHHHHHHHHHHHHHH
Q psy7968 43 FQYRNNSEVLFDCN------------LVF---------------DNCFAYNKEDSEIYEPTIKLNTFLSC 85 (91)
Q Consensus 43 ~~Y~s~~~f~~D~~------------li~---------------~Na~~yn~~~s~~~~~a~~l~~~fe~ 85 (91)
-.|.|+++|+.+|. .|- .-|+.||||+-.......+|.+.+++
T Consensus 104 ~Gy~sv~~fv~am~~se~~Ql~af~~Fi~~~~~L~~aLr~~dW~~fAr~YNGp~y~~n~Yd~kl~~ay~~ 173 (175)
T PF11860_consen 104 LGYASVEEFVEAMCESEAAQLDAFVRFIKANPALLKALRAKDWAAFARGYNGPGYAKNQYDTKLARAYAR 173 (175)
T ss_pred cCCCCHHHHHHHHHhCHHHHHHHHHHHHHcCHHHHHHHHhCCHHHHHHHcCCchhhhccHHHHHHHHHHh
Confidence 34899999998776 111 12577899886665566677766654
No 83
>PF10742 DUF2555: Protein of unknown function (DUF2555); InterPro: IPR019678 This entry represents conserved proteins found in Cyanobacteria. The function is not known.
Probab=24.00 E-value=1.3e+02 Score=16.00 Aligned_cols=32 Identities=25% Similarity=0.306 Sum_probs=26.4
Q ss_pred CHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHh
Q psy7968 32 DFGTIKHKLNMFQYRNNSEVLFDCNLVFDNCF 63 (91)
Q Consensus 32 dL~~I~~rl~~~~Y~s~~~f~~D~~li~~Na~ 63 (91)
+...+.+||++..|.++-+-.+|-.++..=|.
T Consensus 13 ~va~LA~RLE~DdY~~pF~~L~DWhlLRalA~ 44 (57)
T PF10742_consen 13 DVAKLAKRLEEDDYPNPFDGLKDWHLLRALAF 44 (57)
T ss_pred HHHHHHHhhhhccCCchhhhhhHHHHHHHHHh
Confidence 45668899999999999999999888865443
No 84
>PF14579 HHH_6: Helix-hairpin-helix motif; PDB: 2HPM_A 2HPI_A 3E0D_A 3F2C_A 3F2B_A 3F2D_A 2HQA_A 2HNH_A.
Probab=23.89 E-value=1.1e+02 Score=17.15 Aligned_cols=21 Identities=0% Similarity=0.041 Sum_probs=15.2
Q ss_pred HHHHHHHhcCCCCCHHHHHHHH
Q psy7968 34 GTIKHKLNMFQYRNNSEVLFDC 55 (91)
Q Consensus 34 ~~I~~rl~~~~Y~s~~~f~~D~ 55 (91)
..+..|- +|.|.|+++|..-+
T Consensus 42 ~I~~~R~-~g~f~s~~df~~R~ 62 (90)
T PF14579_consen 42 KIVEERE-NGPFKSLEDFIQRL 62 (90)
T ss_dssp HHHHHHH-CSS-SSHHHHHHHS
T ss_pred HHHHhHh-cCCCCCHHHHHHHH
Confidence 3455555 78999999998876
No 85
>KOG1212|consensus
Probab=23.69 E-value=1.8e+02 Score=22.58 Aligned_cols=57 Identities=11% Similarity=0.065 Sum_probs=44.2
Q ss_pred cCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHH
Q psy7968 30 PMDFGTIKHKLNMFQYRNNSEVLFDCNLVFDNCFAYNKEDSEIYEPTIKLNTFLSCL 86 (91)
Q Consensus 30 PmdL~~I~~rl~~~~Y~s~~~f~~D~~li~~Na~~yn~~~s~~~~~a~~l~~~fe~~ 86 (91)
-+|+...++.|+++.+++.+-...=++++..=-..-|-....+..++....+.-++.
T Consensus 54 ~~~~~~L~~~L~~~e~~~~~vl~Ay~~Ra~~vn~~lNcV~~~i~e~~~~~a~~~d~~ 110 (560)
T KOG1212|consen 54 KLDATELAQALQSGELTSVEVLCAYCHRAIEVNQKLNCVVEFIFEAALQAAALDDEY 110 (560)
T ss_pred hcCHHHHHHHHHhCcCcHHHHHHHHHHHHHHhccCcceeeeehhhHHHHHhhchhhh
Confidence 378999999999999999998888888887766666666667777777666655443
No 86
>cd08767 Cdt1_c The C-terminal fold of replication licensing factor Cdt1 is essential for Cdt1 activity and directly interacts with MCM2-7 helicase. Cdt1 is a replication licensing factor in eukaryotes that recruits the Minichromosome Maintenance Complex (MCM2-7) to the Origin Recognition Complex (ORC). The Cdt1 protein is divided into three regions based on sequence comparison and biochemical analyses: the N-terminal region (Cdt1_n) binds DNA in a sequence-, strand-, and conformation-independent manner; the middle winged helix fold (Cdt1_m) binds geminin to inhibit both binding of the MCM complex to origins of replication and DNA; and the C-terminal region (Cdt1_c) is essential for Cdt1 activity and directly interacts with the MCM2-7 helicase. Precise duplication of chromosomal DNA is required for genomic stability during replication. Assembly of replication factors to start DNA replication in eukaryotes must occur only once per cell cycle. To form a pre-replicative complex on replicat
Probab=23.47 E-value=44 Score=20.33 Aligned_cols=19 Identities=32% Similarity=0.653 Sum_probs=14.8
Q ss_pred chhhhcCCcCCHHHHHHHHh
Q psy7968 22 DYHRIIGKPMDFGTIKHKLN 41 (91)
Q Consensus 22 ~Y~~~I~~PmdL~~I~~rl~ 41 (91)
+|..+++. .|+++|++||.
T Consensus 108 ~~lk~~k~-~~~~~V~~rL~ 126 (126)
T cd08767 108 DYLKIDKK-VDLEKVRKRLE 126 (126)
T ss_pred eEEEECcc-ccHHHHHHHhC
Confidence 46666666 99999999884
No 87
>KOG2972|consensus
Probab=23.40 E-value=49 Score=23.04 Aligned_cols=24 Identities=21% Similarity=0.447 Sum_probs=21.9
Q ss_pred hhhcCCcCCHHHHHHHHhcCCCCC
Q psy7968 24 HRIIGKPMDFGTIKHKLNMFQYRN 47 (91)
Q Consensus 24 ~~~I~~PmdL~~I~~rl~~~~Y~s 47 (91)
|++|..|-+|++|..+|+.+.|..
T Consensus 207 fkiv~e~ssl~qV~~~Lr~~G~~i 230 (276)
T KOG2972|consen 207 FKIVTEPSSLNQVAHKLRSKGFEI 230 (276)
T ss_pred eEEEeccchHHHHHHHhhcCCcee
Confidence 889999999999999999988763
No 88
>KOG2781|consensus
Probab=22.51 E-value=55 Score=22.80 Aligned_cols=29 Identities=21% Similarity=0.167 Sum_probs=23.6
Q ss_pred CCHHHHHHHHHHHHHHHhhhcCCCCHHHH
Q psy7968 46 RNNSEVLFDCNLVFDNCFAYNKEDSEIYE 74 (91)
Q Consensus 46 ~s~~~f~~D~~li~~Na~~yn~~~s~~~~ 74 (91)
+.+..|.+.++++|-||...|...-.+..
T Consensus 95 srL~~FaKelkLvfPNaqr~nRG~~~~~~ 123 (290)
T KOG2781|consen 95 SRLKMFAKELKLVFPNAQRLNRGNYVVGE 123 (290)
T ss_pred HHHHHHHHhheEeccChhhhcccceeHHH
Confidence 35679999999999999999987654443
No 89
>PF15469 Sec5: Exocyst complex component Sec5
Probab=22.19 E-value=1.9e+02 Score=18.25 Aligned_cols=30 Identities=7% Similarity=0.123 Sum_probs=21.0
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHHHh
Q psy7968 34 GTIKHKLNMFQYRNNSEVLFDCNLVFDNCF 63 (91)
Q Consensus 34 ~~I~~rl~~~~Y~s~~~f~~D~~li~~Na~ 63 (91)
+.|++.+..|.|..+-.-....+.++....
T Consensus 91 ~~L~~~i~~~dy~~~i~dY~kak~l~~~~~ 120 (182)
T PF15469_consen 91 SNLRECIKKGDYDQAINDYKKAKSLFEKYK 120 (182)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHHHHHhh
Confidence 457788888888777666666666666653
No 90
>PF05402 PqqD: Coenzyme PQQ synthesis protein D (PqqD); InterPro: IPR008792 This family contains several bacterial coenzyme PQQ synthesis protein D (PqqD) sequences. This protein is required for coenzyme pyrrolo-quinoline-quinone (PQQ) biosynthesis.; PDB: 3G2B_A.
Probab=22.13 E-value=1.3e+02 Score=15.48 Aligned_cols=39 Identities=13% Similarity=0.052 Sum_probs=22.9
Q ss_pred hhcCCcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHh
Q psy7968 25 RIIGKPMDFGTIKHKLNMFQYRNNSEVLFDCNLVFDNCF 63 (91)
Q Consensus 25 ~~I~~PmdL~~I~~rl~~~~Y~s~~~f~~D~~li~~Na~ 63 (91)
+.+..|.++..|-+.|.+..=.+.++...|+...+..-.
T Consensus 24 ~~~~g~~t~~ei~~~l~~~y~~~~~~~~~dv~~fl~~L~ 62 (68)
T PF05402_consen 24 ELLDGPRTVEEIVDALAEEYDVDPEEAEEDVEEFLEQLR 62 (68)
T ss_dssp HH--SSS-HHHHHHHHHHHTT--HHHHHHHHHHHHHHHH
T ss_pred HHccCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 345677778888888777654566667777766665443
No 91
>TIGR03824 FlgM_jcvi flagellar biosynthesis anti-sigma factor FlgM. FlgM interacts with and inhibits the alternative sigma factor sigma(28) FliA. The C-terminus of FlgM contains the sigma(28)-binding domain.
Probab=20.72 E-value=1.8e+02 Score=16.53 Aligned_cols=19 Identities=16% Similarity=0.219 Sum_probs=13.5
Q ss_pred HHHHHHhcCCCC-CHHHHHH
Q psy7968 35 TIKHKLNMFQYR-NNSEVLF 53 (91)
Q Consensus 35 ~I~~rl~~~~Y~-s~~~f~~ 53 (91)
.|+..|.+|.|. +.+.+.+
T Consensus 70 ~ik~aI~~G~Y~vd~~~iA~ 89 (95)
T TIGR03824 70 EIKAAIANGSYKVDAEKIAD 89 (95)
T ss_pred HHHHHHHcCCCCCCHHHHHH
Confidence 678888889987 5544443
No 92
>PF09494 Slx4: Slx4 endonuclease; InterPro: IPR018574 The Slx4 protein is a heteromeric structure-specific endonuclease found in fungi. Slx4 with Slx1 acts as a nuclease on branched DNA substrates, particularly simple-Y, 5'-flap, or replication fork structures by cleaving the strand bearing the 5' non-homologous arm at the branch junction and thus generating ligatable nicked products from 5'-flap or replication fork substrates [].
Probab=20.56 E-value=1.5e+02 Score=15.59 Aligned_cols=23 Identities=17% Similarity=0.312 Sum_probs=17.0
Q ss_pred cchhhhc--CCcCCHHHHHHHHhcC
Q psy7968 21 PDYHRII--GKPMDFGTIKHKLNMF 43 (91)
Q Consensus 21 p~Y~~~I--~~PmdL~~I~~rl~~~ 43 (91)
|..++.| -+|+.|..+...|..+
T Consensus 13 p~l~ekIL~YePI~L~el~~~L~~~ 37 (64)
T PF09494_consen 13 PELYEKILMYEPINLEELHAWLKAS 37 (64)
T ss_pred HHHHHHHHcCCCccHHHHHHHHHHc
Confidence 4444444 5899999999999943
No 93
>PF14544 DUF4443: Domain of unknown function (DUF4443); PDB: 2P8T_A.
Probab=20.44 E-value=26 Score=21.08 Aligned_cols=29 Identities=28% Similarity=0.520 Sum_probs=15.6
Q ss_pred CCCCC--CCCCCcchhhhcCCcCCHHHHHHH
Q psy7968 11 SSATF--SVEPVPDYHRIIGKPMDFGTIKHK 39 (91)
Q Consensus 11 F~~pv--~~~~~p~Y~~~I~~PmdL~~I~~r 39 (91)
|++|+ +.+.+|.|.-++++|=-...|..|
T Consensus 1 ~~~~~~~~~~~~~~~ai~~k~~~~~k~ielR 31 (108)
T PF14544_consen 1 FSEPIEVSVDGYPAYAIVVKNPPEFKSIELR 31 (108)
T ss_dssp B---EEEEETTEEEEEEEESS-----HHHHH
T ss_pred CCCceeeeecCcccEEEEecCCchhchHHHH
Confidence 34444 566889999999999777766554
Done!