Query psy7968
Match_columns 91
No_of_seqs 155 out of 1016
Neff 8.5
Searched_HMMs 29240
Date Fri Aug 16 23:27:23 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7968.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7968hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3d7c_A General control of amin 100.0 1.1E-32 3.7E-37 165.6 11.0 85 6-90 23-107 (112)
2 3g0l_A Hwalp4, bromodomain adj 100.0 1.4E-32 4.9E-37 166.2 11.3 84 6-89 29-112 (117)
3 3mb4_A Protein polybromo-1; PB 100.0 1.4E-32 4.7E-37 167.7 10.6 86 5-90 36-121 (124)
4 3k2j_A Protein polybromo-1; PB 100.0 1.9E-32 6.5E-37 168.4 11.0 86 5-90 38-123 (130)
5 2dat_A Possible global transcr 100.0 2.2E-32 7.5E-37 166.7 10.8 85 5-89 34-118 (123)
6 1e6i_A Transcriptional activat 100.0 3.2E-32 1.1E-36 165.6 11.3 84 6-89 29-112 (121)
7 2i7k_A Bromodomain-containing 100.0 2.7E-32 9.4E-37 165.1 10.6 84 6-89 24-107 (117)
8 3nxb_A CAT eye syndrome critic 100.0 3.3E-32 1.1E-36 164.3 10.9 83 6-88 32-114 (116)
9 3mqm_A Probable histone-lysine 100.0 2.4E-32 8.3E-37 167.0 10.5 86 4-89 29-114 (126)
10 3iu5_A Protein polybromo-1; PB 100.0 2.6E-32 8.9E-37 164.8 10.1 85 5-89 26-110 (116)
11 2d9e_A Peregrin; four-helix bu 100.0 6E-32 2.1E-36 164.4 11.5 84 6-89 23-106 (121)
12 3ljw_A Protein polybromo-1; al 100.0 4.3E-32 1.5E-36 164.7 10.8 85 5-89 29-113 (120)
13 2grc_A Probable global transcr 100.0 6E-32 2.1E-36 165.9 10.7 86 4-89 32-117 (129)
14 2oss_A HUNK1 protein, bromodom 100.0 8.6E-32 2.9E-36 164.9 11.3 86 5-90 36-123 (127)
15 3p1f_A CREB-binding protein; s 100.0 3.1E-32 1.1E-36 165.1 9.2 85 5-89 27-113 (119)
16 3hme_A Bromodomain-containing 100.0 1.9E-31 6.6E-36 162.5 11.3 83 6-88 29-111 (123)
17 3jvl_A Bromodomain-containing 100.0 6.1E-32 2.1E-36 164.0 8.8 83 8-90 30-114 (120)
18 2ouo_A HUNK1 protein, bromodom 100.0 1.8E-31 6.1E-36 164.0 10.6 84 7-90 42-127 (130)
19 4alg_A Bromodomain-containing 100.0 2.3E-31 8E-36 167.5 11.2 85 6-90 48-134 (154)
20 3q2e_A Bromodomain and WD repe 100.0 2.7E-31 9.3E-36 161.8 10.7 84 6-89 26-110 (123)
21 3rcw_A Bromodomain-containing 100.0 4.4E-31 1.5E-35 163.1 11.6 84 6-89 29-112 (135)
22 3mb3_A PH-interacting protein; 100.0 4.2E-31 1.5E-35 163.1 10.7 84 6-89 37-121 (135)
23 3uv4_A Second bromodomain of h 100.0 6.1E-31 2.1E-35 166.2 11.1 85 5-89 45-129 (158)
24 3tlp_A Protein polybromo-1; PB 100.0 6.1E-31 2.1E-35 164.9 10.4 87 4-90 45-131 (150)
25 3fkm_X Signaling protein; brom 100.0 2E-30 7E-35 164.9 10.7 85 6-90 37-123 (166)
26 2ri7_A Nucleosome-remodeling f 100.0 1.5E-30 5.2E-35 166.2 10.1 85 6-90 88-172 (174)
27 2yyn_A Transcription intermedi 100.0 2.9E-30 9.8E-35 159.5 10.7 83 6-89 36-120 (135)
28 3dai_A ATPase family AAA domai 100.0 2.4E-29 8.1E-34 154.5 10.7 83 6-88 26-112 (130)
29 2r0y_A Chromatin structure-rem 100.0 9.9E-29 3.4E-33 170.0 10.9 85 5-89 178-262 (311)
30 3uv5_A Transcription initiatio 100.0 2.1E-28 7E-33 165.2 11.4 85 5-89 152-236 (265)
31 3o36_A Transcription intermedi 100.0 1.5E-28 5.2E-33 158.3 9.7 83 6-89 97-181 (184)
32 2r10_A Chromatin structure-rem 100.0 2.5E-28 8.5E-33 170.7 11.2 85 5-89 228-312 (361)
33 3uv5_A Transcription initiatio 100.0 5E-28 1.7E-32 163.3 11.1 84 6-89 30-113 (265)
34 3aad_A Transcription initiatio 100.0 7.1E-28 2.4E-32 164.5 10.9 84 6-89 186-269 (292)
35 3u5n_A E3 ubiquitin-protein li 99.9 1.8E-27 6.3E-32 155.7 10.0 83 6-89 97-199 (207)
36 3aad_A Transcription initiatio 99.9 2.2E-27 7.5E-32 162.1 8.1 84 6-89 63-146 (292)
37 2dkw_A Hypothetical protein KI 99.9 7.1E-27 2.4E-31 143.7 9.4 78 6-88 28-109 (131)
38 2ro1_A Transcription intermedi 99.9 2.7E-27 9.1E-32 153.2 6.2 79 6-89 92-175 (189)
39 2r0y_A Chromatin structure-rem 99.9 4.8E-26 1.6E-30 156.6 6.6 83 4-88 44-127 (311)
40 2r10_A Chromatin structure-rem 99.9 2.5E-25 8.5E-30 155.6 7.8 82 5-88 95-177 (361)
41 3iu6_A Protein polybromo-1; PB 99.9 1E-22 3.4E-27 126.6 9.7 82 4-89 27-108 (147)
42 3lqh_A Histone-lysine N-methyl 99.7 2.4E-17 8.2E-22 106.0 8.4 63 27-89 101-163 (183)
43 3kxe_C Antitoxin protein PARD- 80.2 3.2 0.00011 23.1 4.1 29 34-62 16-44 (88)
44 1fr2_B Colicin E9; protein-pro 58.5 11 0.00039 22.6 3.3 33 34-66 36-68 (134)
45 2jb0_B Colicin E7; hydrolase/i 58.4 12 0.0004 22.5 3.3 33 34-66 33-65 (131)
46 3ro3_B Minsc, peptide of prote 55.0 3.5 0.00012 16.8 0.4 15 45-59 7-21 (22)
47 3b4s_A Protein LUXT; APC91483. 41.3 26 0.00087 19.7 2.8 40 45-85 32-71 (94)
48 7cei_B Protein (colicin E7 imm 37.8 31 0.0011 22.1 3.0 32 34-65 108-139 (206)
49 2f7t_A MOS1 transposase; RNAse 30.4 50 0.0017 20.6 3.2 29 33-61 170-198 (227)
50 3oiq_A Cell division control p 28.6 40 0.0014 22.1 2.5 41 29-69 137-187 (233)
51 3fxd_B Protein ICMR; helix bun 28.2 60 0.0021 16.6 2.6 32 47-78 18-49 (73)
52 1r9d_A Glycerol dehydratase; r 28.2 1.1E+02 0.0037 23.5 5.1 37 53-89 590-626 (787)
53 1xn7_A Hypothetical protein YH 28.1 59 0.002 17.2 2.8 23 31-53 2-24 (78)
54 1rp3_B Anti sigma factor FLGM; 26.7 83 0.0028 17.0 4.2 23 33-55 60-83 (88)
55 3hot_A Transposable element ma 26.5 66 0.0022 21.1 3.4 32 30-61 282-316 (345)
56 3mp7_B Preprotein translocase 26.4 39 0.0013 17.3 1.8 30 47-78 7-36 (61)
57 3dor_A Protein CT_858, CPAF; m 25.3 63 0.0022 24.0 3.3 33 33-65 40-72 (583)
58 2wwb_B SEC61gamma, protein tra 24.5 85 0.0029 16.4 3.6 21 44-64 7-27 (68)
59 3oiq_B DNA polymerase alpha ca 24.0 43 0.0015 15.1 1.4 21 32-56 4-24 (36)
60 2bj7_A Nickel responsive regul 23.8 87 0.003 18.3 3.2 31 33-63 15-45 (138)
61 3s93_A Tudor domain-containing 23.6 20 0.0007 20.3 0.3 31 22-59 35-65 (102)
62 2a3d_A Protein (de novo three- 23.0 87 0.003 16.0 5.1 40 33-72 11-52 (73)
63 4h22_A Leucine-rich repeat fli 22.7 33 0.0011 19.6 1.1 27 57-84 14-40 (103)
64 4a01_A Proton pyrophosphatase; 22.2 56 0.0019 25.1 2.5 20 58-77 689-720 (766)
65 1m3w_A H10H24; four-helix bund 21.4 64 0.0022 13.9 3.1 19 71-89 5-23 (32)
66 4av3_A K(+)-stimulated pyropho 20.9 62 0.0021 24.8 2.5 23 56-78 665-695 (735)
67 1pp5_A Microcin J25; lariat, p 20.2 13 0.00046 15.4 -0.7 15 19-33 5-19 (26)
No 1
>3d7c_A General control of amino acid synthesis protein 5; GCN5, bromodomain, structural genomics consortium, SGC, HOST-virus interaction, nucleus; 2.06A {Homo sapiens} SCOP: a.29.2.1 PDB: 1f68_A 1jm4_B* 1n72_A 1wug_A* 1wum_A* 1zs5_A* 2rnw_A* 2rnx_A* 3gg3_A
Probab=100.00 E-value=1.1e-32 Score=165.63 Aligned_cols=85 Identities=24% Similarity=0.288 Sum_probs=82.1
Q ss_pred CCCCcCCCCCCCCCCcchhhhcCCcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHH
Q psy7968 6 GEETASSATFSVEPVPDYHRIIGKPMDFGTIKHKLNMFQYRNNSEVLFDCNLVFDNCFAYNKEDSEIYEPTIKLNTFLSC 85 (91)
Q Consensus 6 ~~~~~F~~pv~~~~~p~Y~~~I~~PmdL~~I~~rl~~~~Y~s~~~f~~D~~li~~Na~~yn~~~s~~~~~a~~l~~~fe~ 85 (91)
..+.||..||++..+|+|+++|++||||+||++||++|.|.++++|.+||++||+||+.||+++|.++.+|..|++.|++
T Consensus 23 ~~~~~F~~pvd~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~li~~Na~~yN~~~s~~~~~A~~L~~~f~~ 102 (112)
T 3d7c_A 23 PSAWPFMEPVKKSEAPDYYEVIRFPIDLKTMTERLRSRYYVTRKLFVADLQRVIANCREYNPPDSEYCRCASALEKFFYF 102 (112)
T ss_dssp GGGGGGSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHH
T ss_pred CCchhhcCCCCcccccCHHHHccCCcCHHHHHHHHcCCCCcCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Hhhhc
Q psy7968 86 LCHLC 90 (91)
Q Consensus 86 ~~~~~ 90 (91)
.|+..
T Consensus 103 ~~~~~ 107 (112)
T 3d7c_A 103 KLKEG 107 (112)
T ss_dssp HHHHT
T ss_pred HHHHC
Confidence 99853
No 2
>3g0l_A Hwalp4, bromodomain adjacent to zinc finger domain protei; BAZB2, KIAA1 WALP4, structural genomics consortium, SGC, transcription; 2.03A {Homo sapiens} PDB: 3q2f_A* 2e7o_A
Probab=100.00 E-value=1.4e-32 Score=166.16 Aligned_cols=84 Identities=32% Similarity=0.514 Sum_probs=81.8
Q ss_pred CCCCcCCCCCCCCCCcchhhhcCCcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHH
Q psy7968 6 GEETASSATFSVEPVPDYHRIIGKPMDFGTIKHKLNMFQYRNNSEVLFDCNLVFDNCFAYNKEDSEIYEPTIKLNTFLSC 85 (91)
Q Consensus 6 ~~~~~F~~pv~~~~~p~Y~~~I~~PmdL~~I~~rl~~~~Y~s~~~f~~D~~li~~Na~~yn~~~s~~~~~a~~l~~~fe~ 85 (91)
..++||..||++..+|||+++|++||||++|++||++|.|.++++|.+||++||.||..||+++|.++.+|..|++.|++
T Consensus 29 ~~s~~F~~pv~~~~~pdY~~~I~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~~s~~~~~A~~L~~~f~~ 108 (117)
T 3g0l_A 29 EDAWPFLLPVNLKLVPGYKKVIKKPMDFSTIREKLSSGQYPNLETFALDVRLVFDNCETFNEDDSDIGRAGHNMRKYFEK 108 (117)
T ss_dssp TTCGGGSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHSCSSSHHHHHHHHHHHHHHH
T ss_pred CCchhhcCcCChhhcCChHHHcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Hhhh
Q psy7968 86 LCHL 89 (91)
Q Consensus 86 ~~~~ 89 (91)
.|+.
T Consensus 109 ~~~~ 112 (117)
T 3g0l_A 109 KWTD 112 (117)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9974
No 3
>3mb4_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 1.66A {Homo sapiens} PDB: 3g0j_A 2yqd_A
Probab=100.00 E-value=1.4e-32 Score=167.74 Aligned_cols=86 Identities=24% Similarity=0.325 Sum_probs=83.4
Q ss_pred CCCCCcCCCCCCCCCCcchhhhcCCcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHH
Q psy7968 5 AGEETASSATFSVEPVPDYHRIIGKPMDFGTIKHKLNMFQYRNNSEVLFDCNLVFDNCFAYNKEDSEIYEPTIKLNTFLS 84 (91)
Q Consensus 5 ~~~~~~F~~pv~~~~~p~Y~~~I~~PmdL~~I~~rl~~~~Y~s~~~f~~D~~li~~Na~~yn~~~s~~~~~a~~l~~~fe 84 (91)
+..+.||..||+..++|+|+++|++||||++|++||++|.|.++++|.+||++||.||..||+++|.++.+|..|++.|+
T Consensus 36 ~~~s~~F~~pv~~~~~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~~s~i~~~A~~L~~~f~ 115 (124)
T 3mb4_A 36 RRLSAIFLRLPSRSELPDYYLTIKKPMDMEKIRSHMMANKYQDIDSMVEDFVMMFNNACTYNEPESLIYKDALVLHKVLL 115 (124)
T ss_dssp CBGGGGGSCCCCTTTCHHHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHH
T ss_pred CcccHHhhcCCCccccCCHHHHcCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhc
Q psy7968 85 CLCHLC 90 (91)
Q Consensus 85 ~~~~~~ 90 (91)
+.|+.+
T Consensus 116 ~~~~~l 121 (124)
T 3mb4_A 116 ETRRDL 121 (124)
T ss_dssp HHHHHT
T ss_pred HHHHHH
Confidence 999865
No 4
>3k2j_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo01D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.20A {Homo sapiens}
Probab=100.00 E-value=1.9e-32 Score=168.36 Aligned_cols=86 Identities=26% Similarity=0.324 Sum_probs=82.9
Q ss_pred CCCCCcCCCCCCCCCCcchhhhcCCcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHH
Q psy7968 5 AGEETASSATFSVEPVPDYHRIIGKPMDFGTIKHKLNMFQYRNNSEVLFDCNLVFDNCFAYNKEDSEIYEPTIKLNTFLS 84 (91)
Q Consensus 5 ~~~~~~F~~pv~~~~~p~Y~~~I~~PmdL~~I~~rl~~~~Y~s~~~f~~D~~li~~Na~~yn~~~s~~~~~a~~l~~~fe 84 (91)
+..+.||..||+...+|+|+++|++||||++|++||++|.|.++++|.+||++||.||+.||+++|.++++|..|++.|+
T Consensus 38 ~~~s~~F~~pv~~~~~PdY~~iIk~PMdL~tI~~kL~~~~Y~s~~ef~~Dv~Lif~Na~~yN~~~s~i~~~A~~L~~~f~ 117 (130)
T 3k2j_A 38 QLIAEPFYHLPSKKKYPDYYQQIKMPISLQQIRTKLKNQEYETLDHLECDLNLMFENAKRYNVPNSAIYKRVLKLQQVMQ 117 (130)
T ss_dssp CBTTGGGSSCCCTTTCHHHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHH
T ss_pred CCccHhhcCCCChhhCccHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Confidence 45699999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhc
Q psy7968 85 CLCHLC 90 (91)
Q Consensus 85 ~~~~~~ 90 (91)
+.|+.+
T Consensus 118 ~~~~~l 123 (130)
T 3k2j_A 118 AKKKEL 123 (130)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999853
No 5
>2dat_A Possible global transcription activator SNF2L2; bromodomain, all alpha protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=100.00 E-value=2.2e-32 Score=166.67 Aligned_cols=85 Identities=27% Similarity=0.405 Sum_probs=82.4
Q ss_pred CCCCCcCCCCCCCCCCcchhhhcCCcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHH
Q psy7968 5 AGEETASSATFSVEPVPDYHRIIGKPMDFGTIKHKLNMFQYRNNSEVLFDCNLVFDNCFAYNKEDSEIYEPTIKLNTFLS 84 (91)
Q Consensus 5 ~~~~~~F~~pv~~~~~p~Y~~~I~~PmdL~~I~~rl~~~~Y~s~~~f~~D~~li~~Na~~yn~~~s~~~~~a~~l~~~fe 84 (91)
+..++||..||+...+|+|+++|++||||++|++||++|.|.++++|.+||++||+||+.||+++|.++.+|..|++.|+
T Consensus 34 ~~~s~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~~s~i~~~A~~L~~~f~ 113 (123)
T 2dat_A 34 RQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLGDLEKDVMLLCHNAQTFNLEGSQIYEDSIVLQSVFK 113 (123)
T ss_dssp CBSGGGGTSCCCTTTSCHHHHHCSSCCCHHHHHHHHTTTCCCSHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHH
T ss_pred CeeeHHhcCCCCcccCCCHHHHcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhh
Q psy7968 85 CLCHL 89 (91)
Q Consensus 85 ~~~~~ 89 (91)
+.++.
T Consensus 114 ~~~~~ 118 (123)
T 2dat_A 114 SARQS 118 (123)
T ss_dssp HHHHS
T ss_pred HHHHH
Confidence 99874
No 6
>1e6i_A Transcriptional activator GCN5; gene regulation, bromodomain, histone binding, N-acetyl lysine; HET: ALY; 1.87A {Saccharomyces cerevisiae} SCOP: a.29.2.1
Probab=100.00 E-value=3.2e-32 Score=165.59 Aligned_cols=84 Identities=30% Similarity=0.531 Sum_probs=81.8
Q ss_pred CCCCcCCCCCCCCCCcchhhhcCCcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHH
Q psy7968 6 GEETASSATFSVEPVPDYHRIIGKPMDFGTIKHKLNMFQYRNNSEVLFDCNLVFDNCFAYNKEDSEIYEPTIKLNTFLSC 85 (91)
Q Consensus 6 ~~~~~F~~pv~~~~~p~Y~~~I~~PmdL~~I~~rl~~~~Y~s~~~f~~D~~li~~Na~~yn~~~s~~~~~a~~l~~~fe~ 85 (91)
..++||..||++..+|+|+++|++||||++|++||++|.|.++++|.+||++||+||+.||+++|.++.+|..|++.|++
T Consensus 29 ~~a~~F~~pvd~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~~s~i~~~A~~L~~~f~~ 108 (121)
T 1e6i_A 29 AAAWPFLQPVNKEEVPDYYDFIKEPMDLSTMEIKLESNKYQKMEDFIYDARLVFNNCRMYNGENTSYYKYANRLEKFFNN 108 (121)
T ss_dssp TTCGGGSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHH
T ss_pred CCchhhCCCCChhhCcCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Hhhh
Q psy7968 86 LCHL 89 (91)
Q Consensus 86 ~~~~ 89 (91)
.++.
T Consensus 109 ~~~~ 112 (121)
T 1e6i_A 109 KVKE 112 (121)
T ss_dssp HHHT
T ss_pred HHHH
Confidence 9874
No 7
>2i7k_A Bromodomain-containing protein 7; helix, LEFT-handed four-helix bundle, transcription; NMR {Homo sapiens}
Probab=99.98 E-value=2.7e-32 Score=165.05 Aligned_cols=84 Identities=26% Similarity=0.307 Sum_probs=81.2
Q ss_pred CCCCcCCCCCCCCCCcchhhhcCCcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHH
Q psy7968 6 GEETASSATFSVEPVPDYHRIIGKPMDFGTIKHKLNMFQYRNNSEVLFDCNLVFDNCFAYNKEDSEIYEPTIKLNTFLSC 85 (91)
Q Consensus 6 ~~~~~F~~pv~~~~~p~Y~~~I~~PmdL~~I~~rl~~~~Y~s~~~f~~D~~li~~Na~~yn~~~s~~~~~a~~l~~~fe~ 85 (91)
..+.+|..||++..+|||+++|++||||++|++||++|.|.++++|.+||++||.||..||+++|.++++|..|++.|++
T Consensus 24 ~~~~~F~~PVd~~~~pdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Li~~Na~~yN~~~s~i~~~A~~L~~~f~~ 103 (117)
T 2i7k_A 24 DPSAFFSFPVTDFIAPGYSMIIKHPMDFSTMKEKIKNNDYQSIEELKDNFKLMCTNAMIYNKPETIYYKAAKKLLHSGMK 103 (117)
T ss_dssp SGGGTSSSCCCTTTSSSHHHHCSCCCCHHHHHHHHTTTSCCSHHHHHHHHHHHHHHHHHTSCSSSSHHHHHHHHHHHHHH
T ss_pred cccHHhcCCCCccccCCHHHHhCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Hhhh
Q psy7968 86 LCHL 89 (91)
Q Consensus 86 ~~~~ 89 (91)
.++.
T Consensus 104 ~~~~ 107 (117)
T 2i7k_A 104 ILSQ 107 (117)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9873
No 8
>3nxb_A CAT eye syndrome critical region protein 2; structural genomics consortium, SGC, CECR2, CAT eye syndrome chromosome region candidate 2, bromodomain; 1.83A {Homo sapiens} SCOP: a.29.2.0
Probab=99.98 E-value=3.3e-32 Score=164.32 Aligned_cols=83 Identities=27% Similarity=0.345 Sum_probs=80.9
Q ss_pred CCCCcCCCCCCCCCCcchhhhcCCcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHH
Q psy7968 6 GEETASSATFSVEPVPDYHRIIGKPMDFGTIKHKLNMFQYRNNSEVLFDCNLVFDNCFAYNKEDSEIYEPTIKLNTFLSC 85 (91)
Q Consensus 6 ~~~~~F~~pv~~~~~p~Y~~~I~~PmdL~~I~~rl~~~~Y~s~~~f~~D~~li~~Na~~yn~~~s~~~~~a~~l~~~fe~ 85 (91)
..+.||..||++..+|+|+++|++||||++|++||++|.|.++++|.+||++||.||..||+++|.++.+|..|++.|++
T Consensus 32 ~~s~~F~~pv~~~~~pdY~~~I~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~~s~~~~~A~~L~~~f~~ 111 (116)
T 3nxb_A 32 KDSWPFLEPVDESYAPNYYQIIKAPMDISSMEKKLNGGLYCTKEEFVNDMKTMFRNCRKYNGESSEYTKMSDNLERCFHR 111 (116)
T ss_dssp TTCGGGSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred CCcHhhcCcCChhhccChHHHcCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Hhh
Q psy7968 86 LCH 88 (91)
Q Consensus 86 ~~~ 88 (91)
.|+
T Consensus 112 ~~~ 114 (116)
T 3nxb_A 112 AMM 114 (116)
T ss_dssp HHH
T ss_pred HHh
Confidence 886
No 9
>3mqm_A Probable histone-lysine N-methyltransferase ASH1L; KIAA1420, absent small and homeotic disks prote homolog, lysine N-methyltransferase 2H, KMT2H; 2.54A {Homo sapiens}
Probab=99.98 E-value=2.4e-32 Score=167.02 Aligned_cols=86 Identities=19% Similarity=0.116 Sum_probs=82.9
Q ss_pred CCCCCCcCCCCCCCCCCcchhhhcCCcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHH
Q psy7968 4 FAGEETASSATFSVEPVPDYHRIIGKPMDFGTIKHKLNMFQYRNNSEVLFDCNLVFDNCFAYNKEDSEIYEPTIKLNTFL 83 (91)
Q Consensus 4 ~~~~~~~F~~pv~~~~~p~Y~~~I~~PmdL~~I~~rl~~~~Y~s~~~f~~D~~li~~Na~~yn~~~s~~~~~a~~l~~~f 83 (91)
.+..++||..||+...+|||+++|++||||++|++||++|.|.++++|.+||++||+||+.||+++|.++.+|..|++.|
T Consensus 29 g~~~s~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~~s~~~~~A~~L~~~f 108 (126)
T 3mqm_A 29 RQALAAPLLNLPPKKKNADYYEKISDPLDLITIEKQILTGYYKTVEAFDADMLKVFRNAEKYYGRKSPVGRDVCRLRKAY 108 (126)
T ss_dssp CCBTTGGGSSCCCGGGCTTHHHHCSSCCCHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHH
T ss_pred CCChhHHhcCCCCcccCCCHHHHcCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Confidence 35679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhh
Q psy7968 84 SCLCHL 89 (91)
Q Consensus 84 e~~~~~ 89 (91)
++.++.
T Consensus 109 ~~~~~~ 114 (126)
T 3mqm_A 109 YNARHE 114 (126)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999874
No 10
>3iu5_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; 1.63A {Homo sapiens}
Probab=99.98 E-value=2.6e-32 Score=164.82 Aligned_cols=85 Identities=25% Similarity=0.298 Sum_probs=82.3
Q ss_pred CCCCCcCCCCCCCCCCcchhhhcCCcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHH
Q psy7968 5 AGEETASSATFSVEPVPDYHRIIGKPMDFGTIKHKLNMFQYRNNSEVLFDCNLVFDNCFAYNKEDSEIYEPTIKLNTFLS 84 (91)
Q Consensus 5 ~~~~~~F~~pv~~~~~p~Y~~~I~~PmdL~~I~~rl~~~~Y~s~~~f~~D~~li~~Na~~yn~~~s~~~~~a~~l~~~fe 84 (91)
+..+.||..||+...+|+|+++|++||||++|++||++|.|.++++|.+||++||+||..||+++|.++.+|..|++.|+
T Consensus 26 ~~~s~~F~~p~~~~~~pdY~~iI~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~~s~~~~~A~~L~~~f~ 105 (116)
T 3iu5_A 26 RLLCELFIRAPKRRNQPDYYEVVSQPIDLMKIQQKLKMEEYDDVNLLTADFQLLFNNAKSYYKPDSPEYKAACKLWDLYL 105 (116)
T ss_dssp CBGGGGGSSCCCGGGCHHHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHH
T ss_pred CeeeHHhcCCCCcccCCCHHHHhCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhh
Q psy7968 85 CLCHL 89 (91)
Q Consensus 85 ~~~~~ 89 (91)
+.++.
T Consensus 106 ~~~~~ 110 (116)
T 3iu5_A 106 RTRNE 110 (116)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99874
No 11
>2d9e_A Peregrin; four-helix bundle, transcription activator, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.98 E-value=6e-32 Score=164.36 Aligned_cols=84 Identities=31% Similarity=0.514 Sum_probs=81.2
Q ss_pred CCCCcCCCCCCCCCCcchhhhcCCcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHH
Q psy7968 6 GEETASSATFSVEPVPDYHRIIGKPMDFGTIKHKLNMFQYRNNSEVLFDCNLVFDNCFAYNKEDSEIYEPTIKLNTFLSC 85 (91)
Q Consensus 6 ~~~~~F~~pv~~~~~p~Y~~~I~~PmdL~~I~~rl~~~~Y~s~~~f~~D~~li~~Na~~yn~~~s~~~~~a~~l~~~fe~ 85 (91)
..++||..||++..+|+|+++|++||||++|++||++|.|.++++|.+||++||+||+.||+++|.++.+|..|++.|++
T Consensus 23 ~~~~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~s~~~~~A~~L~~~~~~ 102 (121)
T 2d9e_A 23 DTGNIFSEPVPLSEVPDYLDHIKKPMDFFTMKQNLEAYRYLNFDDFEEDFNLIVSNCLKYNAKDTIFYRAAVRLREQGGA 102 (121)
T ss_dssp CSSCSSSSCCCTTTCTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHH
T ss_pred CccHhhCCcCCccccCCHHHHcCCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Hhhh
Q psy7968 86 LCHL 89 (91)
Q Consensus 86 ~~~~ 89 (91)
.|+.
T Consensus 103 ~l~~ 106 (121)
T 2d9e_A 103 VLRQ 106 (121)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8864
No 12
>3ljw_A Protein polybromo-1; alpha helix, alternative splicing, bromodomain, chromatin RE DNA-binding, nucleus, phosphoprotein, transcription; 1.50A {Homo sapiens} PDB: 2ktb_B* 3hmf_A
Probab=99.98 E-value=4.3e-32 Score=164.74 Aligned_cols=85 Identities=20% Similarity=0.249 Sum_probs=82.3
Q ss_pred CCCCCcCCCCCCCCCCcchhhhcCCcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHH
Q psy7968 5 AGEETASSATFSVEPVPDYHRIIGKPMDFGTIKHKLNMFQYRNNSEVLFDCNLVFDNCFAYNKEDSEIYEPTIKLNTFLS 84 (91)
Q Consensus 5 ~~~~~~F~~pv~~~~~p~Y~~~I~~PmdL~~I~~rl~~~~Y~s~~~f~~D~~li~~Na~~yn~~~s~~~~~a~~l~~~fe 84 (91)
+..+.||..||+...+|+|+++|++||||++|++||++|.|.++++|.+||++||+||+.||+++|.++.+|..|++.|+
T Consensus 29 ~~~s~~F~~~~~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~~s~~~~~A~~L~~~f~ 108 (120)
T 3ljw_A 29 RLISELFQKLPSKVQYPDYYAIIKEPIDLKTIAQRIQNGSYKSIHAMAKDIDLLAKNAKTYNEPGSQVFKDANSIKKIFY 108 (120)
T ss_dssp CBTTGGGSSCCCTTTCHHHHHHCSSCCCHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHH
T ss_pred CcccHHhcCCCCcccCCChHHHcCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhh
Q psy7968 85 CLCHL 89 (91)
Q Consensus 85 ~~~~~ 89 (91)
+.|+.
T Consensus 109 ~~~~~ 113 (120)
T 3ljw_A 109 MKKAE 113 (120)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99975
No 13
>2grc_A Probable global transcription activator SNF2L4; bromodomain, BRG1, chromatin remodelling, acely-lysine binding, protein-protein interactions; 1.50A {Homo sapiens} PDB: 3uvd_A 2h60_A
Probab=99.98 E-value=6e-32 Score=165.92 Aligned_cols=86 Identities=27% Similarity=0.383 Sum_probs=82.7
Q ss_pred CCCCCCcCCCCCCCCCCcchhhhcCCcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHH
Q psy7968 4 FAGEETASSATFSVEPVPDYHRIIGKPMDFGTIKHKLNMFQYRNNSEVLFDCNLVFDNCFAYNKEDSEIYEPTIKLNTFL 83 (91)
Q Consensus 4 ~~~~~~~F~~pv~~~~~p~Y~~~I~~PmdL~~I~~rl~~~~Y~s~~~f~~D~~li~~Na~~yn~~~s~~~~~a~~l~~~f 83 (91)
.+..+.||..||+...+|+|+++|++||||+||++||.+|.|.++++|.+||++||+||+.||+++|.++.+|..|++.|
T Consensus 32 ~~~~s~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~Li~~Na~~yN~~~s~i~~~A~~L~~~f 111 (129)
T 2grc_A 32 GRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLNDLEKDVMLLCQNAQTFNLEGSLIYEDSIVLQSVF 111 (129)
T ss_dssp CCBGGGGGSSCCCTTTCHHHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHH
T ss_pred cCeeeHHhcCCCCcccCCCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhh
Q psy7968 84 SCLCHL 89 (91)
Q Consensus 84 e~~~~~ 89 (91)
++.++.
T Consensus 112 ~~~~~~ 117 (129)
T 2grc_A 112 TSVRQK 117 (129)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999874
No 14
>2oss_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.35A {Homo sapiens} PDB: 2yel_A* 3mxf_A* 3p5o_A* 3svf_A* 3svg_A* 3u5j_A* 3u5k_A* 3u5l_A* 3uvw_A* 3uvx_A* 3uvy_A* 3uw9_A* 3zyu_A* 4a9l_A* 4e96_A* 3jvj_A 3jvk_A* 3muk_A* 3mul_A* 2nxb_A ...
Probab=99.98 E-value=8.6e-32 Score=164.86 Aligned_cols=86 Identities=30% Similarity=0.430 Sum_probs=81.8
Q ss_pred CCCCCcCCCCCCCC--CCcchhhhcCCcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHH
Q psy7968 5 AGEETASSATFSVE--PVPDYHRIIGKPMDFGTIKHKLNMFQYRNNSEVLFDCNLVFDNCFAYNKEDSEIYEPTIKLNTF 82 (91)
Q Consensus 5 ~~~~~~F~~pv~~~--~~p~Y~~~I~~PmdL~~I~~rl~~~~Y~s~~~f~~D~~li~~Na~~yn~~~s~~~~~a~~l~~~ 82 (91)
...++||..||+.. .+|||+++|++||||++|++||++|.|.++++|.+||++||+||+.||+++|.++.+|..|++.
T Consensus 36 ~~~a~~F~~PVd~~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~s~i~~~A~~L~~~ 115 (127)
T 2oss_A 36 HQFAWPFQQPVDAVKLNLPDYYKIIKTPMDMGTIKKRLENNYYWNAQECIQDFNTMFTNCYIYNKPGDDIVLMAEALEKL 115 (127)
T ss_dssp STTCGGGSSCCCTTTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHH
T ss_pred CccchhhcCCCChhhccCccHHHHcCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 35689999999975 8999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhc
Q psy7968 83 LSCLCHLC 90 (91)
Q Consensus 83 fe~~~~~~ 90 (91)
|++.|+.+
T Consensus 116 f~~~~~~l 123 (127)
T 2oss_A 116 FLQKINEL 123 (127)
T ss_dssp HHHHHTTC
T ss_pred HHHHHHHC
Confidence 99999854
No 15
>3p1f_A CREB-binding protein; structural genomics consortium, SGC, CBP, crebbp, CREB bindi protein isoform A, KAT3A, RSTS, RST, bromodomain, transcrip; HET: 3PF; 1.63A {Homo sapiens} SCOP: a.29.2.1 PDB: 3dwy_A 3p1d_A 3p1c_A 3p1e_A* 3svh_A* 4a9k_A* 1jsp_B* 2d82_A* 2l84_A* 2l85_A* 2rny_A* 3i3j_A
Probab=99.98 E-value=3.1e-32 Score=165.08 Aligned_cols=85 Identities=29% Similarity=0.446 Sum_probs=81.8
Q ss_pred CCCCCcCCCCCCCC--CCcchhhhcCCcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHH
Q psy7968 5 AGEETASSATFSVE--PVPDYHRIIGKPMDFGTIKHKLNMFQYRNNSEVLFDCNLVFDNCFAYNKEDSEIYEPTIKLNTF 82 (91)
Q Consensus 5 ~~~~~~F~~pv~~~--~~p~Y~~~I~~PmdL~~I~~rl~~~~Y~s~~~f~~D~~li~~Na~~yn~~~s~~~~~a~~l~~~ 82 (91)
...++||..||++. ++|+|+++|++||||++|++||++|.|.++++|.+||++||+||..||+++|.++.+|..|++.
T Consensus 27 ~~~s~~F~~pv~~~~~~~pdY~~iI~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~~s~i~~~A~~L~~~ 106 (119)
T 3p1f_A 27 DPESLPFRQPVDPQLLGIPDYFDIVKNPMDLSTIKRKLDTGQYQEPWQYVDDVWLMFNNAWLYNRKTSRVYKFCSKLAEV 106 (119)
T ss_dssp TTTTGGGSSCCCHHHHTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHH
T ss_pred CCCCchhcCCCCchhccCCCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 46789999999988 7999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhh
Q psy7968 83 LSCLCHL 89 (91)
Q Consensus 83 fe~~~~~ 89 (91)
|++.++.
T Consensus 107 f~~~~~~ 113 (119)
T 3p1f_A 107 FEQEIDP 113 (119)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999874
No 16
>3hme_A Bromodomain-containing protein 9; BRD9, bromodomain containing 9 isoform 1, LAVS3040, rhabdomyosarcoma antigen MU-RMS-40.8; 2.23A {Homo sapiens}
Probab=99.97 E-value=1.9e-31 Score=162.51 Aligned_cols=83 Identities=28% Similarity=0.386 Sum_probs=80.7
Q ss_pred CCCCcCCCCCCCCCCcchhhhcCCcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHH
Q psy7968 6 GEETASSATFSVEPVPDYHRIIGKPMDFGTIKHKLNMFQYRNNSEVLFDCNLVFDNCFAYNKEDSEIYEPTIKLNTFLSC 85 (91)
Q Consensus 6 ~~~~~F~~pv~~~~~p~Y~~~I~~PmdL~~I~~rl~~~~Y~s~~~f~~D~~li~~Na~~yn~~~s~~~~~a~~l~~~fe~ 85 (91)
..+.||..||++..+|||+++|++||||++|++||++|.|.++++|.+||++||+||..||+++|.++++|..|++.|++
T Consensus 29 ~~~~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~~s~~~~~A~~L~~~~~~ 108 (123)
T 3hme_A 29 DPHGFFAFPVTDAIAPGYSMIIKHPMDFGTMKDKIVANEYKSVTEFKADFKLMCDNAMTYNRPDTVYYKLAKKILHAGFK 108 (123)
T ss_dssp CTTCSSSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHH
T ss_pred CccHhhcCCCChhhccCHHHHCCCCCCHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Hhh
Q psy7968 86 LCH 88 (91)
Q Consensus 86 ~~~ 88 (91)
.|+
T Consensus 109 ~~~ 111 (123)
T 3hme_A 109 MMS 111 (123)
T ss_dssp HTC
T ss_pred HHH
Confidence 886
No 17
>3jvl_A Bromodomain-containing protein 4; alpha helical, N-acetyl lysine binding domain, signaling protein; 1.20A {Mus musculus} PDB: 3jvm_A 2dww_A 2i8n_A 3oni_A* 2dvv_A* 2e3k_A* 2g4a_A 3s92_A* 2oo1_A* 2e7n_A 2wp1_A*
Probab=99.97 E-value=6.1e-32 Score=164.01 Aligned_cols=83 Identities=34% Similarity=0.486 Sum_probs=80.5
Q ss_pred CCcCCCCCCCCC--CcchhhhcCCcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHH
Q psy7968 8 ETASSATFSVEP--VPDYHRIIGKPMDFGTIKHKLNMFQYRNNSEVLFDCNLVFDNCFAYNKEDSEIYEPTIKLNTFLSC 85 (91)
Q Consensus 8 ~~~F~~pv~~~~--~p~Y~~~I~~PmdL~~I~~rl~~~~Y~s~~~f~~D~~li~~Na~~yn~~~s~~~~~a~~l~~~fe~ 85 (91)
++||..||++.. +|+|+++|++||||++|++||++|.|.++++|.+||++||+||..||+++|.++.+|..|++.|++
T Consensus 30 a~~F~~pvd~~~~~~pdY~~iI~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~~s~~~~~A~~L~~~f~~ 109 (120)
T 3jvl_A 30 AWPFYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLESREYRDAQEFGADVRLMFSNCYKYNPPDHEVVAMARKLQDVFEM 109 (120)
T ss_dssp HGGGSSCCCHHHHTCTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHH
T ss_pred cchhcCCCCchhcCCCCHHHHcCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Confidence 789999999987 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Hhhhc
Q psy7968 86 LCHLC 90 (91)
Q Consensus 86 ~~~~~ 90 (91)
.|+.+
T Consensus 110 ~~~~~ 114 (120)
T 3jvl_A 110 RFAKM 114 (120)
T ss_dssp HHTTC
T ss_pred HHHHC
Confidence 99854
No 18
>2ouo_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.89A {Homo sapiens} PDB: 2yem_A*
Probab=99.97 E-value=1.8e-31 Score=164.01 Aligned_cols=84 Identities=33% Similarity=0.464 Sum_probs=80.2
Q ss_pred CCCcCCCCCCCC--CCcchhhhcCCcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHH
Q psy7968 7 EETASSATFSVE--PVPDYHRIIGKPMDFGTIKHKLNMFQYRNNSEVLFDCNLVFDNCFAYNKEDSEIYEPTIKLNTFLS 84 (91)
Q Consensus 7 ~~~~F~~pv~~~--~~p~Y~~~I~~PmdL~~I~~rl~~~~Y~s~~~f~~D~~li~~Na~~yn~~~s~~~~~a~~l~~~fe 84 (91)
.++||..||++. ++|+|+++|++||||+||++||++|.|.++++|.+||++||+||+.||+++|.++.+|..|++.|+
T Consensus 42 ~a~~F~~PVd~~~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~li~~Na~~yN~~~s~i~~~A~~L~~~f~ 121 (130)
T 2ouo_A 42 YAWPFYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLEAREYRDAQEFGADVRLMFSNCYKYNPPDHEVVAMARKLQDVFE 121 (130)
T ss_dssp HHGGGSSCCCTTSTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHH
T ss_pred hHHHhcCCCChhhccCCcHHHHcCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 478999999886 499999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhc
Q psy7968 85 CLCHLC 90 (91)
Q Consensus 85 ~~~~~~ 90 (91)
+.|+.+
T Consensus 122 ~~~~~l 127 (130)
T 2ouo_A 122 MRFAKM 127 (130)
T ss_dssp HHHHTS
T ss_pred HHHHHC
Confidence 999754
No 19
>4alg_A Bromodomain-containing protein 2; signaling protein, inhibitor, histone, epigenetic reader; HET: 1GH; 1.60A {Homo sapiens} PDB: 4a9e_A 4a9h_A* 4a9i_A* 4a9j_A* 4a9m_A* 4a9n_A* 4a9o_A* 4a9p_A* 4a9f_A* 4alh_A* 4akn_A* 2yek_A* 2ydw_A* 2yw5_A
Probab=99.97 E-value=2.3e-31 Score=167.53 Aligned_cols=85 Identities=32% Similarity=0.466 Sum_probs=81.9
Q ss_pred CCCCcCCCCCCCC--CCcchhhhcCCcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHH
Q psy7968 6 GEETASSATFSVE--PVPDYHRIIGKPMDFGTIKHKLNMFQYRNNSEVLFDCNLVFDNCFAYNKEDSEIYEPTIKLNTFL 83 (91)
Q Consensus 6 ~~~~~F~~pv~~~--~~p~Y~~~I~~PmdL~~I~~rl~~~~Y~s~~~f~~D~~li~~Na~~yn~~~s~~~~~a~~l~~~f 83 (91)
..++||..||++. ++|+|+++|++||||++|++||+++.|.++++|.+||+|||.||+.||+++|.++.+|..|++.|
T Consensus 48 ~~a~~F~~PVd~~~~~~PdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif~Na~~YN~~~s~i~~~A~~L~~~f 127 (154)
T 4alg_A 48 QFAWPFRQPVDAVKLGLPDYHKIIKQPMDMGTIKRRLENNYYWAASECMQDFNTMFTNCYIYNKPTDDIVLMAQTLEKIF 127 (154)
T ss_dssp TTCGGGSSCCCTTTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHH
T ss_pred cCchhhcCCCChhhccCCCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Confidence 5789999999988 79999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhc
Q psy7968 84 SCLCHLC 90 (91)
Q Consensus 84 e~~~~~~ 90 (91)
++.|+.+
T Consensus 128 ~~~~~~l 134 (154)
T 4alg_A 128 LQKVASM 134 (154)
T ss_dssp HHHHTTS
T ss_pred HHHHHHC
Confidence 9999854
No 20
>3q2e_A Bromodomain and WD repeat-containing protein 1; structural genomics consortium, SGC, cell cycle progression, signal transduction, apoptosis; 1.74A {Homo sapiens}
Probab=99.97 E-value=2.7e-31 Score=161.80 Aligned_cols=84 Identities=30% Similarity=0.494 Sum_probs=80.9
Q ss_pred CCCCcCCCCCCCCCCcchhhhcCCcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhcCC-CCHHHHHHHHHHHHHH
Q psy7968 6 GEETASSATFSVEPVPDYHRIIGKPMDFGTIKHKLNMFQYRNNSEVLFDCNLVFDNCFAYNKE-DSEIYEPTIKLNTFLS 84 (91)
Q Consensus 6 ~~~~~F~~pv~~~~~p~Y~~~I~~PmdL~~I~~rl~~~~Y~s~~~f~~D~~li~~Na~~yn~~-~s~~~~~a~~l~~~fe 84 (91)
..+.||..||++..+|+|+++|++||||++|++||++|.|.++++|.+||++||.||+.||++ +|.++.+|..|++.|+
T Consensus 26 ~~s~~F~~pv~~~~~pdY~~~I~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~~~s~i~~~A~~L~~~f~ 105 (123)
T 3q2e_A 26 EDSEPFRQPVDLVEYPDYRDIIDTPMDFGTVRETLDAGNYDSPLEFCKDIRLIFSNAKAYTPNKRSKIYSMTLRLSALFE 105 (123)
T ss_dssp GGGGGGSSCCCTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCCTTSHHHHHHHHHHHHHH
T ss_pred CCcHhhcCCCChhhcCCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
Confidence 458999999999999999999999999999999999999999999999999999999999996 8999999999999999
Q ss_pred HHhhh
Q psy7968 85 CLCHL 89 (91)
Q Consensus 85 ~~~~~ 89 (91)
+.++.
T Consensus 106 ~~~~~ 110 (123)
T 3q2e_A 106 EKMKK 110 (123)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99974
No 21
>3rcw_A Bromodomain-containing protein 1; transcription, structural genomics, structural consortium, SGC; 2.21A {Homo sapiens}
Probab=99.97 E-value=4.4e-31 Score=163.08 Aligned_cols=84 Identities=30% Similarity=0.525 Sum_probs=81.4
Q ss_pred CCCCcCCCCCCCCCCcchhhhcCCcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHH
Q psy7968 6 GEETASSATFSVEPVPDYHRIIGKPMDFGTIKHKLNMFQYRNNSEVLFDCNLVFDNCFAYNKEDSEIYEPTIKLNTFLSC 85 (91)
Q Consensus 6 ~~~~~F~~pv~~~~~p~Y~~~I~~PmdL~~I~~rl~~~~Y~s~~~f~~D~~li~~Na~~yn~~~s~~~~~a~~l~~~fe~ 85 (91)
..++||..||++..+|||+++|++||||++|++||++|.|.++++|.+||++||+||..||+++|.++.+|..|++.|++
T Consensus 29 ~~~~~F~~pv~~~~~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~~s~~~~~A~~L~~~~~~ 108 (135)
T 3rcw_A 29 DPARIFAQPVSLKEVPDYLDHIKHPMDFATMRKRLEAQGYKNLHEFEEDFDLIIDNCMKYNARDTVFYRAAVRLRDQGGV 108 (135)
T ss_dssp CTTCSSSSCCCTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHH
T ss_pred CcchhhcCCCChhhcCCHHHHhCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Hhhh
Q psy7968 86 LCHL 89 (91)
Q Consensus 86 ~~~~ 89 (91)
.++.
T Consensus 109 ~~~~ 112 (135)
T 3rcw_A 109 VLRQ 112 (135)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8874
No 22
>3mb3_A PH-interacting protein; PHIP, pleckstrin homology domain interacting protein, DCAF14 DDB1 and CUL4 associated factor 14, SGC; 2.25A {Homo sapiens}
Probab=99.97 E-value=4.2e-31 Score=163.14 Aligned_cols=84 Identities=29% Similarity=0.483 Sum_probs=81.0
Q ss_pred CCCCcCCCCCCCCCCcchhhhcCCcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhcCC-CCHHHHHHHHHHHHHH
Q psy7968 6 GEETASSATFSVEPVPDYHRIIGKPMDFGTIKHKLNMFQYRNNSEVLFDCNLVFDNCFAYNKE-DSEIYEPTIKLNTFLS 84 (91)
Q Consensus 6 ~~~~~F~~pv~~~~~p~Y~~~I~~PmdL~~I~~rl~~~~Y~s~~~f~~D~~li~~Na~~yn~~-~s~~~~~a~~l~~~fe 84 (91)
..+.||..||++..+|||+++|++||||++|++||++|.|.++++|.+||++||.||..||++ +|.++.+|..|++.|+
T Consensus 37 ~~s~~F~~pv~~~~~pdY~~iI~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~~~s~i~~~A~~L~~~f~ 116 (135)
T 3mb3_A 37 EDSEPFRQPVDLLEYPDYRDIIDTPMDFATVRETLEAGNYESPMELCKDVRLIFSNSKAYTPSKRSRIYSMSLRLSAFFE 116 (135)
T ss_dssp GGGGGGSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCCTTCHHHHHHHHHHHHHH
T ss_pred CCChhhcCCCChhhCCCHHHHhCCCcCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
Confidence 458999999999999999999999999999999999999999999999999999999999998 8999999999999999
Q ss_pred HHhhh
Q psy7968 85 CLCHL 89 (91)
Q Consensus 85 ~~~~~ 89 (91)
+.|+.
T Consensus 117 ~~~~~ 121 (135)
T 3mb3_A 117 EHISS 121 (135)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99873
No 23
>3uv4_A Second bromodomain of human transcription initiat TFIID subunit 1 (TAF1); structural genomics consortium, SGC; 1.89A {Homo sapiens} PDB: 3hmh_A
Probab=99.97 E-value=6.1e-31 Score=166.21 Aligned_cols=85 Identities=22% Similarity=0.346 Sum_probs=82.0
Q ss_pred CCCCCcCCCCCCCCCCcchhhhcCCcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHH
Q psy7968 5 AGEETASSATFSVEPVPDYHRIIGKPMDFGTIKHKLNMFQYRNNSEVLFDCNLVFDNCFAYNKEDSEIYEPTIKLNTFLS 84 (91)
Q Consensus 5 ~~~~~~F~~pv~~~~~p~Y~~~I~~PmdL~~I~~rl~~~~Y~s~~~f~~D~~li~~Na~~yn~~~s~~~~~a~~l~~~fe 84 (91)
...++||..||++..+|+|+++|++||||+||++||++|.|.++++|.+||++||.||..||+++|.++++|..|.+.|+
T Consensus 45 ~~~s~~F~~PVd~~~~PdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif~Na~~yN~~~s~i~~~A~~L~~~~~ 124 (158)
T 3uv4_A 45 VPDSWPFHHPVNKKFVPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKYNGPESQYTKTAQEIVNVCY 124 (158)
T ss_dssp STTCGGGTSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred CCCchhhcCcCChhhcccHHHHcCCccCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhh
Q psy7968 85 CLCHL 89 (91)
Q Consensus 85 ~~~~~ 89 (91)
+.++.
T Consensus 125 ~~l~e 129 (158)
T 3uv4_A 125 QTLTE 129 (158)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99874
No 24
>3tlp_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.13A {Homo sapiens}
Probab=99.97 E-value=6.1e-31 Score=164.90 Aligned_cols=87 Identities=26% Similarity=0.323 Sum_probs=83.2
Q ss_pred CCCCCCcCCCCCCCCCCcchhhhcCCcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHH
Q psy7968 4 FAGEETASSATFSVEPVPDYHRIIGKPMDFGTIKHKLNMFQYRNNSEVLFDCNLVFDNCFAYNKEDSEIYEPTIKLNTFL 83 (91)
Q Consensus 4 ~~~~~~~F~~pv~~~~~p~Y~~~I~~PmdL~~I~~rl~~~~Y~s~~~f~~D~~li~~Na~~yn~~~s~~~~~a~~l~~~f 83 (91)
.+..+.||..||+...+|+|+++|++||||++|++||++|.|.++++|.+||++||+||+.||+++|.++.+|..|++.|
T Consensus 45 ~~~~~~~F~~~~~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~s~i~~~A~~L~~~f 124 (150)
T 3tlp_A 45 GRRLCDLFMVKPSKKDYPDYYKIILEPMDLKIIEHNIRNDKYAGEEGMIEDMKLMFRNARHYNEEGSQVYNDAHILEKLL 124 (150)
T ss_dssp CCBGGGGGSSCCCTTTCHHHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHH
T ss_pred CCcccHHhcCCCchhhCcCHHHHhCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhc
Q psy7968 84 SCLCHLC 90 (91)
Q Consensus 84 e~~~~~~ 90 (91)
++.|+.+
T Consensus 125 ~~~~~~l 131 (150)
T 3tlp_A 125 KEKRKEL 131 (150)
T ss_dssp HHHHHHH
T ss_pred HHHHHHc
Confidence 9999853
No 25
>3fkm_X Signaling protein; bromodomain, malaria, structural genomics, structural genomi consortium, SGC; 2.50A {Plasmodium falciparum 3D7}
Probab=99.97 E-value=2e-30 Score=164.93 Aligned_cols=85 Identities=29% Similarity=0.436 Sum_probs=79.0
Q ss_pred CCCCcCCCCCCCC--CCcchhhhcCCcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHH
Q psy7968 6 GEETASSATFSVE--PVPDYHRIIGKPMDFGTIKHKLNMFQYRNNSEVLFDCNLVFDNCFAYNKEDSEIYEPTIKLNTFL 83 (91)
Q Consensus 6 ~~~~~F~~pv~~~--~~p~Y~~~I~~PmdL~~I~~rl~~~~Y~s~~~f~~D~~li~~Na~~yn~~~s~~~~~a~~l~~~f 83 (91)
..+.||..||++. .+|+|+++|++||||+||++||.+|.|.++++|.+||++||.||+.||+++|.++.+|..|++.|
T Consensus 37 ~~s~~F~~PVd~~~~~~pdY~~iIk~PmDL~tI~~kL~~~~Y~s~~ef~~Dv~Lif~Na~~yN~~~s~i~~~A~~L~~~f 116 (166)
T 3fkm_X 37 EGGHIFEKLVDAKKQNCPDYYDVIKNPMSFSCIKTKLKKGQYAYPSEFVKDVQLIFDNCSLYNTSNSVVAITGKNIETYF 116 (166)
T ss_dssp TTGGGGSSCCC-----CCCGGGCCSSCCCHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHHHSSCTTSHHHHHHHHHHHHH
T ss_pred CCChhhcCCCChhhccCCCHHHhcCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Confidence 5688999999866 69999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhc
Q psy7968 84 SCLCHLC 90 (91)
Q Consensus 84 e~~~~~~ 90 (91)
++.|+.+
T Consensus 117 ~~~l~~~ 123 (166)
T 3fkm_X 117 NNQLIVM 123 (166)
T ss_dssp HHHHHHT
T ss_pred HHHHHHc
Confidence 9999753
No 26
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=99.97 E-value=1.5e-30 Score=166.17 Aligned_cols=85 Identities=26% Similarity=0.389 Sum_probs=82.2
Q ss_pred CCCCcCCCCCCCCCCcchhhhcCCcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHH
Q psy7968 6 GEETASSATFSVEPVPDYHRIIGKPMDFGTIKHKLNMFQYRNNSEVLFDCNLVFDNCFAYNKEDSEIYEPTIKLNTFLSC 85 (91)
Q Consensus 6 ~~~~~F~~pv~~~~~p~Y~~~I~~PmdL~~I~~rl~~~~Y~s~~~f~~D~~li~~Na~~yn~~~s~~~~~a~~l~~~fe~ 85 (91)
..+.||..||++..+|+|+++|++||||++|++||++|.|.++++|.+||++||+||+.||+++|.++.+|..|++.|++
T Consensus 88 ~~~~~F~~pv~~~~~pdY~~~I~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~~s~~~~~A~~L~~~f~~ 167 (174)
T 2ri7_A 88 KMAWPFLEPVDPNDAPDYYGVIKEPMDLATMEERVQRRYYEKLTEFVADMTKIFDNCRYYNPSDSPFYQCAEVLESFFVQ 167 (174)
T ss_dssp GGGTTTSSCCCTTTCHHHHHHCSSCCCHHHHHHHHHTTCCCBHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHH
T ss_pred hhhhhhhcCCCcccCCchHHHhCCcCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Hhhhc
Q psy7968 86 LCHLC 90 (91)
Q Consensus 86 ~~~~~ 90 (91)
.++.+
T Consensus 168 ~~~~~ 172 (174)
T 2ri7_A 168 KLKGF 172 (174)
T ss_dssp HTTTC
T ss_pred HHHhc
Confidence 99754
No 27
>2yyn_A Transcription intermediary factor 1-alpha; bromo domain, structural genomics, NPPSFA; 2.50A {Homo sapiens}
Probab=99.97 E-value=2.9e-30 Score=159.51 Aligned_cols=83 Identities=34% Similarity=0.567 Sum_probs=79.3
Q ss_pred CCCCcCCCCCCCCCCcchhhhcCCcCCHHHHHHHHhc--CCCCCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHH
Q psy7968 6 GEETASSATFSVEPVPDYHRIIGKPMDFGTIKHKLNM--FQYRNNSEVLFDCNLVFDNCFAYNKEDSEIYEPTIKLNTFL 83 (91)
Q Consensus 6 ~~~~~F~~pv~~~~~p~Y~~~I~~PmdL~~I~~rl~~--~~Y~s~~~f~~D~~li~~Na~~yn~~~s~~~~~a~~l~~~f 83 (91)
..++||..||+. .+|+|+++|++||||++|++||++ +.|.++++|.+||++||+||+.||+++|.++.+|..|++.|
T Consensus 36 ~~s~~F~~Pv~~-~~pdY~~iIk~PmDL~tI~~kL~~~~~~Y~s~~ef~~Dv~Lif~Na~~yN~~~s~i~~~A~~L~~~f 114 (135)
T 2yyn_A 36 EMSLAFQDPVPL-TVPDYYKIIKNPMDLSTIKKRLQEDYSMYSKPEDFVADFRLIFQNCAEFNEPDSEVANAGIKLENYF 114 (135)
T ss_dssp GGGGGGSSCCCT-TSTTHHHHCSSCCCHHHHHHHHHSSSCCCSSHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHH
T ss_pred ccchhhcCCCcc-cCCCHHHHcCCCCCHHHHHHHHhccccCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Confidence 568999999988 799999999999999999999998 58999999999999999999999999999999999999999
Q ss_pred HHHhhh
Q psy7968 84 SCLCHL 89 (91)
Q Consensus 84 e~~~~~ 89 (91)
+++++.
T Consensus 115 ~~~~~~ 120 (135)
T 2yyn_A 115 EELLKN 120 (135)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999974
No 28
>3dai_A ATPase family AAA domain-containing protein 2; ancca, AAA+ nuclear coregulator cancer-associated Pro2000 protein, two AAA DOMA containing protein; 1.95A {Homo sapiens} PDB: 3lxj_A
Probab=99.96 E-value=2.4e-29 Score=154.51 Aligned_cols=83 Identities=20% Similarity=0.363 Sum_probs=77.8
Q ss_pred CCCCcCCCCCCCCCCcchhhhcCCcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhcCCCCHH----HHHHHHHHH
Q psy7968 6 GEETASSATFSVEPVPDYHRIIGKPMDFGTIKHKLNMFQYRNNSEVLFDCNLVFDNCFAYNKEDSEI----YEPTIKLNT 81 (91)
Q Consensus 6 ~~~~~F~~pv~~~~~p~Y~~~I~~PmdL~~I~~rl~~~~Y~s~~~f~~D~~li~~Na~~yn~~~s~~----~~~a~~l~~ 81 (91)
+.++||..||++..+|||+++|++||||+||++||.+|.|.++++|.+||++||+||..||+++|++ +..|..|++
T Consensus 26 ~~~~~F~~pv~~~~~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~~s~~~~~i~~~A~~L~~ 105 (130)
T 3dai_A 26 KRFRVFTKPVDPDEVPDYVTVIKQPMDLSSVISKIDLHKYLTVKDYLRDIDLICSNALEYNPDRDPGDRLIRHRACALRD 105 (130)
T ss_dssp GGGGGGSSCCCTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHCCSSSHHHHHHHHHHHHHHH
T ss_pred CccHhhcCCCChhhcCCHHHHcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCCCChhHHHHHHHHHHHHH
Confidence 5688999999999999999999999999999999999999999999999999999999999999876 678888888
Q ss_pred HHHHHhh
Q psy7968 82 FLSCLCH 88 (91)
Q Consensus 82 ~fe~~~~ 88 (91)
.+...++
T Consensus 106 ~~~~~i~ 112 (130)
T 3dai_A 106 TAYAIIK 112 (130)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8888775
No 29
>2r0y_A Chromatin structure-remodeling complex protein RSC4; bromodomain, chromatin, remodeler, RSC, acetylation, transcription, chromatin regulator, nucleus, phosphorylation; HET: ALY; 1.75A {Saccharomyces cerevisiae} PDB: 2r0s_A
Probab=99.96 E-value=9.9e-29 Score=169.97 Aligned_cols=85 Identities=22% Similarity=0.421 Sum_probs=82.3
Q ss_pred CCCCCcCCCCCCCCCCcchhhhcCCcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHH
Q psy7968 5 AGEETASSATFSVEPVPDYHRIIGKPMDFGTIKHKLNMFQYRNNSEVLFDCNLVFDNCFAYNKEDSEIYEPTIKLNTFLS 84 (91)
Q Consensus 5 ~~~~~~F~~pv~~~~~p~Y~~~I~~PmdL~~I~~rl~~~~Y~s~~~f~~D~~li~~Na~~yn~~~s~~~~~a~~l~~~fe 84 (91)
+..++||..||++..+|+|+++|++||||+||++||++|.|.++++|.+||++||+||+.||+++|.++.+|..|++.|+
T Consensus 178 ~~~s~~F~~pvd~~~~PdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif~N~~~yN~~~s~i~~~A~~L~~~f~ 257 (311)
T 2r0y_A 178 VKLSEPFMELVDKDELPEYYEIVHSPMALSIVKQNLEIGQYSKIYDFIIDMLLVFQNAHIFNDPSALIYKDATTLTNYFN 257 (311)
T ss_dssp SCTTGGGSSCCCTTTCHHHHHHCSSCCCHHHHHHHHHHTCCCBHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHH
T ss_pred CccHHHHhCCCChhhcccHHHHhCCccCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhh
Q psy7968 85 CLCHL 89 (91)
Q Consensus 85 ~~~~~ 89 (91)
+.++.
T Consensus 258 ~~~~~ 262 (311)
T 2r0y_A 258 YLIQK 262 (311)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99873
No 30
>3uv5_A Transcription initiation factor TFIID subunit 1; tandem bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A
Probab=99.96 E-value=2.1e-28 Score=165.19 Aligned_cols=85 Identities=22% Similarity=0.346 Sum_probs=81.9
Q ss_pred CCCCCcCCCCCCCCCCcchhhhcCCcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHH
Q psy7968 5 AGEETASSATFSVEPVPDYHRIIGKPMDFGTIKHKLNMFQYRNNSEVLFDCNLVFDNCFAYNKEDSEIYEPTIKLNTFLS 84 (91)
Q Consensus 5 ~~~~~~F~~pv~~~~~p~Y~~~I~~PmdL~~I~~rl~~~~Y~s~~~f~~D~~li~~Na~~yn~~~s~~~~~a~~l~~~fe 84 (91)
...++||..||+...+|+|+++|++||||+||++||.+|.|.++++|.+||++||+||+.||+++|.++.+|..|++.|+
T Consensus 152 ~~~~~~F~~pv~~~~~pdY~~iIk~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~lif~Na~~yN~~~s~~~~~A~~l~~~~~ 231 (265)
T 3uv5_A 152 VPDSWPFHHPVNKKFVPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKYNGPESQYTKTAQEIVNVCY 231 (265)
T ss_dssp STTCGGGTSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHH
T ss_pred hhhhHHHhCCCChhHhCcHHHHhCCcccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhh
Q psy7968 85 CLCHL 89 (91)
Q Consensus 85 ~~~~~ 89 (91)
+.++.
T Consensus 232 ~~~~~ 236 (265)
T 3uv5_A 232 QTLTE 236 (265)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99874
No 31
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=99.96 E-value=1.5e-28 Score=158.26 Aligned_cols=83 Identities=34% Similarity=0.566 Sum_probs=78.9
Q ss_pred CCCCcCCCCCCCCCCcchhhhcCCcCCHHHHHHHHhc--CCCCCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHH
Q psy7968 6 GEETASSATFSVEPVPDYHRIIGKPMDFGTIKHKLNM--FQYRNNSEVLFDCNLVFDNCFAYNKEDSEIYEPTIKLNTFL 83 (91)
Q Consensus 6 ~~~~~F~~pv~~~~~p~Y~~~I~~PmdL~~I~~rl~~--~~Y~s~~~f~~D~~li~~Na~~yn~~~s~~~~~a~~l~~~f 83 (91)
..+.+|..||+.+ +|+|+++|++||||++|++||++ |.|.++++|.+||++||+||+.||+++|.++++|..|++.|
T Consensus 97 ~~s~~F~~Pv~~~-~pdY~~iIk~PmdL~tI~~kl~~~~~~Y~s~~ef~~Dv~li~~Na~~yN~~~s~v~~~a~~L~~~f 175 (184)
T 3o36_A 97 EMSLAFQDPVPLT-VPDYYKIIKNPMDLSTIKKRLQEDYSMYSKPEDFVADFRLIFQNCAEFNEPDSEVANAGIKLENYF 175 (184)
T ss_dssp TTCHHHHSCCCTT-STTHHHHCSSCCCHHHHHHHHHSTTCSCCSHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHH
T ss_pred hhhhhhccccccC-CCchhhhcCCCCCHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Confidence 4688999999865 89999999999999999999998 78999999999999999999999999999999999999999
Q ss_pred HHHhhh
Q psy7968 84 SCLCHL 89 (91)
Q Consensus 84 e~~~~~ 89 (91)
++.|+.
T Consensus 176 ~~~~~~ 181 (184)
T 3o36_A 176 EELLKN 181 (184)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999974
No 32
>2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A*
Probab=99.95 E-value=2.5e-28 Score=170.75 Aligned_cols=85 Identities=22% Similarity=0.421 Sum_probs=82.3
Q ss_pred CCCCCcCCCCCCCCCCcchhhhcCCcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHH
Q psy7968 5 AGEETASSATFSVEPVPDYHRIIGKPMDFGTIKHKLNMFQYRNNSEVLFDCNLVFDNCFAYNKEDSEIYEPTIKLNTFLS 84 (91)
Q Consensus 5 ~~~~~~F~~pv~~~~~p~Y~~~I~~PmdL~~I~~rl~~~~Y~s~~~f~~D~~li~~Na~~yn~~~s~~~~~a~~l~~~fe 84 (91)
...++||..||+...+|+|+++|++||||++|++||++|.|.++++|.+||+|||+||+.||+++|.++.+|..|++.|+
T Consensus 228 ~~~s~~F~~pvd~~~~PdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif~N~~~yN~~~s~i~~~A~~L~~~f~ 307 (361)
T 2r10_A 228 VKLSEPFMELVDKDELPEYYEIVHSPMALSIVKQNLEIGQYSKIYDFIIDMLLVFQNAHIFNDPSALIYKDATTLTNYFN 307 (361)
T ss_dssp SCTTGGGSSCCCTTTCTHHHHHCSSCCCHHHHHHHHHHTCCCBHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHH
T ss_pred CcchhcccCCCChhhcccHHHHhcCcccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhh
Q psy7968 85 CLCHL 89 (91)
Q Consensus 85 ~~~~~ 89 (91)
+.++.
T Consensus 308 ~~~~~ 312 (361)
T 2r10_A 308 YLIQK 312 (361)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99873
No 33
>3uv5_A Transcription initiation factor TFIID subunit 1; tandem bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A
Probab=99.95 E-value=5e-28 Score=163.29 Aligned_cols=84 Identities=18% Similarity=0.246 Sum_probs=81.6
Q ss_pred CCCCcCCCCCCCCCCcchhhhcCCcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHH
Q psy7968 6 GEETASSATFSVEPVPDYHRIIGKPMDFGTIKHKLNMFQYRNNSEVLFDCNLVFDNCFAYNKEDSEIYEPTIKLNTFLSC 85 (91)
Q Consensus 6 ~~~~~F~~pv~~~~~p~Y~~~I~~PmdL~~I~~rl~~~~Y~s~~~f~~D~~li~~Na~~yn~~~s~~~~~a~~l~~~fe~ 85 (91)
..++||..||++..+|+|+++|++||||+||++||++|.|.++++|.+||++||+||..||+++|.++.+|..|.+.|++
T Consensus 30 ~~~~~F~~pv~~~~~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~~s~i~~~A~~l~~~~~~ 109 (265)
T 3uv5_A 30 PNTYPFHTPVNAKVVKDYYKIITRPMDLQTLRENVRKRLYPSREEFREHLELIVKNSATYNGPKHSLTQISQSMLDLCDE 109 (265)
T ss_dssp TTCGGGTSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred CCchhhhCCCChhhcCCHHHHhCCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHHHHHH
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Hhhh
Q psy7968 86 LCHL 89 (91)
Q Consensus 86 ~~~~ 89 (91)
.|+.
T Consensus 110 ~~~~ 113 (265)
T 3uv5_A 110 KLKE 113 (265)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9874
No 34
>3aad_A Transcription initiation factor TFIID subunit 1; protein-protein complex, bromodomain, transcription, transcr regulation, chromatin regulator, transcription-C complex; 3.30A {Homo sapiens}
Probab=99.95 E-value=7.1e-28 Score=164.49 Aligned_cols=84 Identities=23% Similarity=0.350 Sum_probs=81.2
Q ss_pred CCCCcCCCCCCCCCCcchhhhcCCcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHH
Q psy7968 6 GEETASSATFSVEPVPDYHRIIGKPMDFGTIKHKLNMFQYRNNSEVLFDCNLVFDNCFAYNKEDSEIYEPTIKLNTFLSC 85 (91)
Q Consensus 6 ~~~~~F~~pv~~~~~p~Y~~~I~~PmdL~~I~~rl~~~~Y~s~~~f~~D~~li~~Na~~yn~~~s~~~~~a~~l~~~fe~ 85 (91)
..++||..||+...+|||+++|++||||++|++||++|.|.++++|.+||++||+||+.||+++|.++.+|..|++.|++
T Consensus 186 ~~s~~F~~pvd~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~Li~~Na~~yN~~~s~i~~~A~~L~~~~~~ 265 (292)
T 3aad_A 186 PDSWPFHHPVNKKFVPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKYNGPESQYTKTAQEIVNVCYQ 265 (292)
T ss_dssp TTCGGGTSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHH
T ss_pred cchhHHHhcccccccccHHHHcCCcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Hhhh
Q psy7968 86 LCHL 89 (91)
Q Consensus 86 ~~~~ 89 (91)
.++.
T Consensus 266 ~~~~ 269 (292)
T 3aad_A 266 TLTE 269 (292)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8864
No 35
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=99.95 E-value=1.8e-27 Score=155.65 Aligned_cols=83 Identities=27% Similarity=0.465 Sum_probs=79.4
Q ss_pred CCCCcCCCCCCCCCCcchhhhcCCcCCHHHHHHHHhc---CCCCCHHHHHHHHHHHHHHHhhhcC---------------
Q psy7968 6 GEETASSATFSVEPVPDYHRIIGKPMDFGTIKHKLNM---FQYRNNSEVLFDCNLVFDNCFAYNK--------------- 67 (91)
Q Consensus 6 ~~~~~F~~pv~~~~~p~Y~~~I~~PmdL~~I~~rl~~---~~Y~s~~~f~~D~~li~~Na~~yn~--------------- 67 (91)
..+.||..||+. .+|+|+++|++||||++|++||++ |.|.++++|.+||++||+||+.||+
T Consensus 97 ~~s~~F~~Pv~~-~~pdY~~iIk~PmdL~tI~~kl~~~~~~~Y~s~~~f~~Dv~li~~Na~~yN~~~s~v~~~A~~l~~~ 175 (207)
T 3u5n_A 97 ELSIEFQEPVPA-SIPNYYKIIKKPMDLSTVKKKLQKKHSQHYQIPDDFVADVRLIFKNCERFNEMMKVVQVYADTQEIN 175 (207)
T ss_dssp TTCGGGSSCCCT-TSTTHHHHCSSCCCHHHHHHHHSTTSTTCCSSHHHHHHHHHHHHHHHHHHHHHHHHHC---------
T ss_pred cchhhhhccCCh-hhccHhHHhCCccCHHHHHHHHhcccCCCcCCHHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHhc
Confidence 578999999987 799999999999999999999997 7999999999999999999999999
Q ss_pred --CCCHHHHHHHHHHHHHHHHhhh
Q psy7968 68 --EDSEIYEPTIKLNTFLSCLCHL 89 (91)
Q Consensus 68 --~~s~~~~~a~~l~~~fe~~~~~ 89 (91)
+++.++++|..|+..|+++|+.
T Consensus 176 ~~~~s~i~~~a~~L~~~fe~~~~~ 199 (207)
T 3u5n_A 176 LKADSEVAQAGKAVALYFEDKLTE 199 (207)
T ss_dssp -CCCCHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999984
No 36
>3aad_A Transcription initiation factor TFIID subunit 1; protein-protein complex, bromodomain, transcription, transcr regulation, chromatin regulator, transcription-C complex; 3.30A {Homo sapiens}
Probab=99.94 E-value=2.2e-27 Score=162.06 Aligned_cols=84 Identities=18% Similarity=0.246 Sum_probs=80.9
Q ss_pred CCCCcCCCCCCCCCCcchhhhcCCcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHH
Q psy7968 6 GEETASSATFSVEPVPDYHRIIGKPMDFGTIKHKLNMFQYRNNSEVLFDCNLVFDNCFAYNKEDSEIYEPTIKLNTFLSC 85 (91)
Q Consensus 6 ~~~~~F~~pv~~~~~p~Y~~~I~~PmdL~~I~~rl~~~~Y~s~~~f~~D~~li~~Na~~yn~~~s~~~~~a~~l~~~fe~ 85 (91)
..++||..||++..+|+|+++|++||||+||++||++|.|.++++|.+||++||+||..||+++|.++.+|..|.+.|++
T Consensus 63 ~~a~~F~~pV~~~~~pdY~~iIk~PmDL~tIk~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~~s~i~~~A~~L~~~~~~ 142 (292)
T 3aad_A 63 PNTYPFHTPVNAKVVKDYYKIITRPMDLQTLRENVRKRLYPSREEFREHLELIVKNSATYNGPKHSLTQISQSMLDLCDE 142 (292)
T ss_dssp TTCGGGSSSCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHTCSSSHHHHHHTHHHHTTTT
T ss_pred CcchhhcCCCCchhcccHHHHcCCcCCHHHHHHHhhCCCcCCHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHh
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred Hhhh
Q psy7968 86 LCHL 89 (91)
Q Consensus 86 ~~~~ 89 (91)
.++.
T Consensus 143 ~~~~ 146 (292)
T 3aad_A 143 KLKE 146 (292)
T ss_dssp TGGG
T ss_pred hhhc
Confidence 8764
No 37
>2dkw_A Hypothetical protein KIAA1240; bromodomain-like, five-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.94 E-value=7.1e-27 Score=143.65 Aligned_cols=78 Identities=24% Similarity=0.395 Sum_probs=72.2
Q ss_pred CCCCcCCCCCCCCCCcchhhhcCCcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhcCCCCH----HHHHHHHHHH
Q psy7968 6 GEETASSATFSVEPVPDYHRIIGKPMDFGTIKHKLNMFQYRNNSEVLFDCNLVFDNCFAYNKEDSE----IYEPTIKLNT 81 (91)
Q Consensus 6 ~~~~~F~~pv~~~~~p~Y~~~I~~PmdL~~I~~rl~~~~Y~s~~~f~~D~~li~~Na~~yn~~~s~----~~~~a~~l~~ 81 (91)
..+.||..| +|||+++|++||||+||++||.+|.|.++++|.+||++||+||..||+++|+ ++..|..|++
T Consensus 28 ~~~~~F~~P-----~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~~f~~D~~Li~~Na~~yN~~~s~~~~~i~~~A~~L~~ 102 (131)
T 2dkw_A 28 KRFNIFSKP-----VSDYLEVIKEPMDLSTVITKIDKHNYLTAKDFLKDIDLICSNALEYNPDKDPGDKIIRHRACTLKD 102 (131)
T ss_dssp GGGCTTSSC-----CSSCTTSCSSCCCHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHH
T ss_pred ccchhhcCc-----CccHHhHcCCCcCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCCCCChhHHHHHHHHHHHHH
Confidence 457899998 8999999999999999999999999999999999999999999999999985 5688999999
Q ss_pred HHHHHhh
Q psy7968 82 FLSCLCH 88 (91)
Q Consensus 82 ~fe~~~~ 88 (91)
.+...++
T Consensus 103 ~~~~~l~ 109 (131)
T 2dkw_A 103 TAHAIIA 109 (131)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8888774
No 38
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=99.94 E-value=2.7e-27 Score=153.21 Aligned_cols=79 Identities=14% Similarity=0.134 Sum_probs=73.9
Q ss_pred CCCCcCCCCCCCCCCcchhhhcC--CcCCHHHHHHHHhcC---CCCCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHH
Q psy7968 6 GEETASSATFSVEPVPDYHRIIG--KPMDFGTIKHKLNMF---QYRNNSEVLFDCNLVFDNCFAYNKEDSEIYEPTIKLN 80 (91)
Q Consensus 6 ~~~~~F~~pv~~~~~p~Y~~~I~--~PmdL~~I~~rl~~~---~Y~s~~~f~~D~~li~~Na~~yn~~~s~~~~~a~~l~ 80 (91)
..++||.+||+ |+||++|+ +||||+||++||++| .|.++++|.+||+|||+||++||+ ++.++.+|..|+
T Consensus 92 ~~s~pF~~pV~----~~Yy~iIk~~~PMDL~tIk~kL~~~~~~~Y~s~~eF~~Dv~Lif~N~~~yN~-~s~~~~~a~~L~ 166 (189)
T 2ro1_A 92 EPCRPLHQLAT----DSTFSLDQPGGTLDLTLIRARLQEKLSPPYSSPQEFAQDVGRMFKQFNKLTE-DKADVQSIIGLQ 166 (189)
T ss_dssp TTHHHHHSCSC----CTTCSSSCSSCCCCHHHHHHHHHTSSSSCCSCHHHHHHHHHHHHHHHHHHCC-SSCSSHHHHHHH
T ss_pred ccchhhcCCCC----hhhhccccCCCcccHHHHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHH
Confidence 46789999998 78999998 899999999999999 999999999999999999999994 888889999999
Q ss_pred HHHHHHhhh
Q psy7968 81 TFLSCLCHL 89 (91)
Q Consensus 81 ~~fe~~~~~ 89 (91)
+.|+++|+.
T Consensus 167 ~~Fe~~~~~ 175 (189)
T 2ro1_A 167 RFFETRMNE 175 (189)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999974
No 39
>2r0y_A Chromatin structure-remodeling complex protein RSC4; bromodomain, chromatin, remodeler, RSC, acetylation, transcription, chromatin regulator, nucleus, phosphorylation; HET: ALY; 1.75A {Saccharomyces cerevisiae} PDB: 2r0s_A
Probab=99.92 E-value=4.8e-26 Score=156.59 Aligned_cols=83 Identities=25% Similarity=0.353 Sum_probs=77.2
Q ss_pred CCCCCCcCCCCCCCCCCcchhhhcCCcCCHHHHHHHHhcCCCC-CHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHH
Q psy7968 4 FAGEETASSATFSVEPVPDYHRIIGKPMDFGTIKHKLNMFQYR-NNSEVLFDCNLVFDNCFAYNKEDSEIYEPTIKLNTF 82 (91)
Q Consensus 4 ~~~~~~~F~~pv~~~~~p~Y~~~I~~PmdL~~I~~rl~~~~Y~-s~~~f~~D~~li~~Na~~yn~~~s~~~~~a~~l~~~ 82 (91)
.+..+.||..||+...+||||++|++||||+||++|| +.|. ++++|.+||++||+||+.||+++|.++.+|..|++.
T Consensus 44 ~r~~~~~F~~p~~~~~~PdY~~iIk~PmDL~tI~~kl--~~y~~s~~~f~~D~~li~~Na~~yN~~~s~i~~~A~~l~~~ 121 (311)
T 2r0y_A 44 YKDIFKDFIKLPSRKFHPQYYYKIQQPMSINEIKSRD--YEYEDGPSNFLLDVELLTKNCQAYNEYDSLIVKNSMQVVML 121 (311)
T ss_dssp SHHHHGGGSSCCCTTTCHHHHHHCSSCCCHHHHHHSC--CCSTTHHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHH
T ss_pred CCchhHHhcCCCCcccCCChHHHcCCCCCHHHHHHHH--hcccCCHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHH
Confidence 3456889999999999999999999999999999998 5555 899999999999999999999999999999999999
Q ss_pred HHHHhh
Q psy7968 83 LSCLCH 88 (91)
Q Consensus 83 fe~~~~ 88 (91)
|++.|.
T Consensus 122 ~~~~~~ 127 (311)
T 2r0y_A 122 IEFEVL 127 (311)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 998874
No 40
>2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A*
Probab=99.92 E-value=2.5e-25 Score=155.57 Aligned_cols=82 Identities=26% Similarity=0.336 Sum_probs=76.2
Q ss_pred CCCCCcCCCCCCCCCCcchhhhcCCcCCHHHHHHHHhcCCCC-CHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHH
Q psy7968 5 AGEETASSATFSVEPVPDYHRIIGKPMDFGTIKHKLNMFQYR-NNSEVLFDCNLVFDNCFAYNKEDSEIYEPTIKLNTFL 83 (91)
Q Consensus 5 ~~~~~~F~~pv~~~~~p~Y~~~I~~PmdL~~I~~rl~~~~Y~-s~~~f~~D~~li~~Na~~yn~~~s~~~~~a~~l~~~f 83 (91)
+.++.||..||+...+||||++|++||||+||++|| +.|. ++++|.+||++||+||+.||+++|.++.+|..|++.|
T Consensus 95 ~~~~~~F~~p~~~~~~PdY~~iIk~Pmdl~tI~~kl--~~y~~~~~~f~~D~~li~~Na~~yN~~~s~i~~~a~~l~~~~ 172 (361)
T 2r10_A 95 KDIFKDFIKLPSRKFHPQYYYKIQQPMSINEIKSRD--YEYEDGPSNFLLDVELLTKNCQAYNEYDSLIVKNSMQVVMLI 172 (361)
T ss_dssp HHHHGGGSSCCCTTTCTTHHHHCSSCCCHHHHHTSC--CCSTTHHHHHHHHHHHHHHHHHHHBCSSSHHHHHHHHHHHHH
T ss_pred CcccHHhcCCCCcccCCChHhhcCCCcCHHHHHHHh--hccCCCHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHH
Confidence 345789999999999999999999999999999998 4554 8999999999999999999999999999999999999
Q ss_pred HHHhh
Q psy7968 84 SCLCH 88 (91)
Q Consensus 84 e~~~~ 88 (91)
++.|.
T Consensus 173 ~~~~~ 177 (361)
T 2r10_A 173 EFEVL 177 (361)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 98774
No 41
>3iu6_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; HET: OCS; 1.79A {Homo sapiens}
Probab=99.89 E-value=1e-22 Score=126.63 Aligned_cols=82 Identities=21% Similarity=0.299 Sum_probs=77.2
Q ss_pred CCCCCCcCCCCCCCCCCcchhhhcCCcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHH
Q psy7968 4 FAGEETASSATFSVEPVPDYHRIIGKPMDFGTIKHKLNMFQYRNNSEVLFDCNLVFDNCFAYNKEDSEIYEPTIKLNTFL 83 (91)
Q Consensus 4 ~~~~~~~F~~pv~~~~~p~Y~~~I~~PmdL~~I~~rl~~~~Y~s~~~f~~D~~li~~Na~~yn~~~s~~~~~a~~l~~~f 83 (91)
.+..+.+|...|+.. |+||. +.||+|.+|++||.+|.|.++++|..||.+||+||++||.++|.++.+|..|++.|
T Consensus 27 GR~lsd~F~~LPsk~--pdYY~--k~Pi~l~~Ikkri~~~~Y~sld~f~~D~~lmf~NAr~yN~e~S~IyeDAv~Lq~~f 102 (147)
T 3iu6_A 27 GRCYSDSLAEIPAVD--PNFPN--KPPLTFDIIRKNVENNRYRRLDLFQEHMFEVLERARRMNRTDSEIYEDAVELQQFF 102 (147)
T ss_dssp SCBGGGGGTTCCSSC--TTSTT--SCCCCHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHH
T ss_pred CCcchHHHhHCCCCC--ccccC--CCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 466789999999888 78998 99999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhh
Q psy7968 84 SCLCHL 89 (91)
Q Consensus 84 e~~~~~ 89 (91)
.+....
T Consensus 103 ~~~r~e 108 (147)
T 3iu6_A 103 IKIRDE 108 (147)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988764
No 42
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=99.72 E-value=2.4e-17 Score=105.99 Aligned_cols=63 Identities=16% Similarity=0.207 Sum_probs=59.2
Q ss_pred cCCcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhhh
Q psy7968 27 IGKPMDFGTIKHKLNMFQYRNNSEVLFDCNLVFDNCFAYNKEDSEIYEPTIKLNTFLSCLCHL 89 (91)
Q Consensus 27 I~~PmdL~~I~~rl~~~~Y~s~~~f~~D~~li~~Na~~yn~~~s~~~~~a~~l~~~fe~~~~~ 89 (91)
++.||||++|++||++|.|.|+++|+.||++||+||..+|++++++.+++..|+..|+++++.
T Consensus 101 ~k~PmDL~~i~kKl~~~~Y~s~~eF~~Dv~lIf~n~~~~~~~~~e~~~ag~~l~~~f~~~l~~ 163 (183)
T 3lqh_A 101 QQQPLDLEGVKRKMDQGNYTSVLEFSDDIVKIIQAAINSDGGQPEIKKANSMVKSFFIRQMER 163 (183)
T ss_dssp C--CCSHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCCccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhccCCChhhhhhhhHHHHHHHHHHHH
Confidence 589999999999999999999999999999999999999999999999999999999999973
No 43
>3kxe_C Antitoxin protein PARD-1; complex, TA system, protein binding; 2.60A {Caulobacter crescentus NA1000}
Probab=80.22 E-value=3.2 Score=23.08 Aligned_cols=29 Identities=17% Similarity=0.154 Sum_probs=24.8
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Q psy7968 34 GTIKHKLNMFQYRNNSEVLFDCNLVFDNC 62 (91)
Q Consensus 34 ~~I~~rl~~~~Y~s~~~f~~D~~li~~Na 62 (91)
..|...+..|.|.|.+++++|.-..+..-
T Consensus 16 ~~i~~~V~sG~Y~s~SEviR~~lR~l~~r 44 (88)
T 3kxe_C 16 AFIDSQVADGRYGSASEVIRAGLRLLEEN 44 (88)
T ss_dssp HHHHHHHTTTSCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Confidence 57889999999999999999977776553
No 44
>1fr2_B Colicin E9; protein-protein complex, zinc containing enzyme, HNH-motif, immune system; 1.60A {Escherichia coli} SCOP: d.4.1.1 PDB: 1bxi_B 1emv_B 1fsj_B 2gyk_B 2gze_B 2gzf_B 2gzg_B 2gzi_B 2gzj_B 2k5x_B 2vlo_B 2wpt_B 2vlp_B 2vln_B 2vlq_B 1v13_A 1v14_A 1v15_A 3u43_B 1znv_B ...
Probab=58.46 E-value=11 Score=22.58 Aligned_cols=33 Identities=9% Similarity=-0.029 Sum_probs=28.7
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhc
Q psy7968 34 GTIKHKLNMFQYRNNSEVLFDCNLVFDNCFAYN 66 (91)
Q Consensus 34 ~~I~~rl~~~~Y~s~~~f~~D~~li~~Na~~yn 66 (91)
+.|..+|+...+.|+++|...+.+-+.|--.+-
T Consensus 36 ~~IAdkLRGr~F~sFd~FR~afW~eVs~DpeL~ 68 (134)
T 1fr2_B 36 DRIADKLRDKEFKSFDDFRKAVWEEVSKDPELS 68 (134)
T ss_dssp HHHHHHHTTCEESSHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHhcCCcCCCHHHHHHHHHHHHhcCHHHH
Confidence 679999999999999999999998888765543
No 45
>2jb0_B Colicin E7; hydrolase/inhibitor, hydrolase/inhibitor complex, zinc, toxin, plasmid, nuclease, hydrolase, antibiotic, H-N-H motif, bacteriocin; 1.91A {Escherichia coli} SCOP: d.4.1.1 PDB: 3fbd_A 2jaz_B 2jbg_B 3gkl_A 3gjn_B 1pt3_A 2ivh_A 1ujz_B 2erh_B
Probab=58.36 E-value=12 Score=22.48 Aligned_cols=33 Identities=9% Similarity=-0.021 Sum_probs=28.7
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhc
Q psy7968 34 GTIKHKLNMFQYRNNSEVLFDCNLVFDNCFAYN 66 (91)
Q Consensus 34 ~~I~~rl~~~~Y~s~~~f~~D~~li~~Na~~yn 66 (91)
+.|..+|+...+.|+++|...+.+-+.|--.+-
T Consensus 33 ~qIAdkLRGr~F~sFd~FR~afW~eVs~DpeL~ 65 (131)
T 2jb0_B 33 DRIANKLRDKEFKSFDDFRKKFWEEVSKDPELS 65 (131)
T ss_dssp HHHHHHHTTCEESSHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHcCCcCCCHHHHHHHHHHHHhcCHHHH
Confidence 679999999999999999999998888765543
No 46
>3ro3_B Minsc, peptide of protein inscuteable homolog; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=55.00 E-value=3.5 Score=16.83 Aligned_cols=15 Identities=13% Similarity=0.038 Sum_probs=11.6
Q ss_pred CCCHHHHHHHHHHHH
Q psy7968 45 YRNNSEVLFDCNLVF 59 (91)
Q Consensus 45 Y~s~~~f~~D~~li~ 59 (91)
-.|++.+..|+++|-
T Consensus 7 vDSV~rWmeDLr~MT 21 (22)
T 3ro3_B 7 VDSVQRWMEDLKLMT 21 (26)
T ss_pred hHHHHHHHHHHHhhc
Confidence 357888999988873
No 47
>3b4s_A Protein LUXT; APC91483.1, LUXT domain, structural genomics, PSI-2, protein structure initiative; 3.10A {Vibrio parahaemolyticus rimd 2210633}
Probab=41.27 E-value=26 Score=19.74 Aligned_cols=40 Identities=13% Similarity=0.125 Sum_probs=24.6
Q ss_pred CCCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHH
Q psy7968 45 YRNNSEVLFDCNLVFDNCFAYNKEDSEIYEPTIKLNTFLSC 85 (91)
Q Consensus 45 Y~s~~~f~~D~~li~~Na~~yn~~~s~~~~~a~~l~~~fe~ 85 (91)
+.++ +|..=++++|+|...+........+.-.++.+..+.
T Consensus 32 l~~~-eF~aIlrL~F~hi~~~~~~~~f~~~~i~~l~~~~~~ 71 (94)
T 3b4s_A 32 LEDS-EFLAILRLLFHHIVTSESAHEFAANGIDRLYKMVES 71 (94)
T ss_dssp TTSH-HHHHHHHHHHHHHHHSCCHHHHHTCHHHHHHHHHHH
T ss_pred HhCH-HHHHHHHHHHHHHHccCCccHHHHhHHHHHHHHHHH
Confidence 4444 699999999998887765544333333444444333
No 48
>7cei_B Protein (colicin E7 immunity protein); DNAse, E-group colicins, protein-protein interaction, protei recognition, immune system; 2.30A {Escherichia coli str} SCOP: d.4.1.1
Probab=37.76 E-value=31 Score=22.07 Aligned_cols=32 Identities=9% Similarity=-0.031 Sum_probs=27.6
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhh
Q psy7968 34 GTIKHKLNMFQYRNNSEVLFDCNLVFDNCFAY 65 (91)
Q Consensus 34 ~~I~~rl~~~~Y~s~~~f~~D~~li~~Na~~y 65 (91)
+.|..+|+...+.++++|...+.+-+.|--.+
T Consensus 108 sqIADKLRGR~F~sFD~FR~AFWkeVa~DPeL 139 (206)
T 7cei_B 108 DRIANKLRDKEFKSFDDFRKKFWEEVSKDPEL 139 (206)
T ss_dssp HHHHHHHTTCBCSSHHHHHHHHHHHHTTCTTT
T ss_pred HHHHHHhcCCcCCCHHHHHHHHHHHHccCHHH
Confidence 67999999999999999999999888764433
No 49
>2f7t_A MOS1 transposase; RNAse-H like fold, DDD motif, DNA binding protein; 2.25A {Drosophila mauritiana}
Probab=30.35 E-value=50 Score=20.55 Aligned_cols=29 Identities=17% Similarity=0.184 Sum_probs=23.8
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Q psy7968 33 FGTIKHKLNMFQYRNNSEVLFDCNLVFDN 61 (91)
Q Consensus 33 L~~I~~rl~~~~Y~s~~~f~~D~~li~~N 61 (91)
++.++.++.+..+.+.+++..-+...|..
T Consensus 170 w~~lk~~l~~~~~~~~~~l~~~i~~~~~~ 198 (227)
T 2f7t_A 170 FASMGHALAEQRFDSYESVKKWLDEWFAA 198 (227)
T ss_dssp HHHHHHHHHTCCBCSHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhcCCCCCHHHHHHHHHHHHHh
Confidence 67888899888899999998888776654
No 50
>3oiq_A Cell division control protein 13; OB fold, dimer, dimeric complex, protein binding; HET: DNA; 2.40A {Saccharomyces cerevisiae} PDB: 3oip_A 3nws_A 3nwt_A
Probab=28.61 E-value=40 Score=22.09 Aligned_cols=41 Identities=20% Similarity=0.388 Sum_probs=25.3
Q ss_pred CcCCHHHHHHHHhc----CCCCCHHHHH------HHHHHHHHHHhhhcCCC
Q psy7968 29 KPMDFGTIKHKLNM----FQYRNNSEVL------FDCNLVFDNCFAYNKED 69 (91)
Q Consensus 29 ~PmdL~~I~~rl~~----~~Y~s~~~f~------~D~~li~~Na~~yn~~~ 69 (91)
.|+||.++..-+.+ +.+.+..+++ ..+..||.|-...+...
T Consensus 137 kPidl~s~~~~~~~~s~~~~~~~~~~~~~~~~~~~ti~~If~NLI~l~~~~ 187 (233)
T 3oiq_A 137 KPLDLVSVISTISTKSTNSSKHSSSELISECDLNNSLVDIFNNLIEMNRDE 187 (233)
T ss_dssp EECCHHHHHHHHHHC---------------CHHHHHHHHHHHHHHHHHHCS
T ss_pred ccccHHHHHHHhhccCccccccccchhhhhccchhHHHHHHHHHHHhcccc
Confidence 59999999888754 3344555543 56899999999987644
No 51
>3fxd_B Protein ICMR; helix bundle, helix-turn-helix, unknown function; 2.10A {Legionella pneumophila subsp} PDB: 3fxe_B
Probab=28.23 E-value=60 Score=16.57 Aligned_cols=32 Identities=13% Similarity=0.181 Sum_probs=22.8
Q ss_pred CHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHH
Q psy7968 47 NNSEVLFDCNLVFDNCFAYNKEDSEIYEPTIK 78 (91)
Q Consensus 47 s~~~f~~D~~li~~Na~~yn~~~s~~~~~a~~ 78 (91)
.+..=+.|.-+-+..|..||+.+..-..+...
T Consensus 18 eiispvkdciltvakavsfnpggkdntdavev 49 (73)
T 3fxd_B 18 EIISPVKDCILTVAKAVSFNPGGKDNTDAVEV 49 (73)
T ss_dssp HTHHHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred HHhhhHHHHHHHHHhhhccCCCCCCcchHHHH
Confidence 33445788889999999999987655544333
No 52
>1r9d_A Glycerol dehydratase; radical SAM, lyase; 1.80A {Clostridium butyricum} SCOP: c.7.1.1 PDB: 1r8w_A 1r9e_A
Probab=28.22 E-value=1.1e+02 Score=23.54 Aligned_cols=37 Identities=5% Similarity=-0.020 Sum_probs=28.0
Q ss_pred HHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhhh
Q psy7968 53 FDCNLVFDNCFAYNKEDSEIYEPTIKLNTFLSCLCHL 89 (91)
Q Consensus 53 ~D~~li~~Na~~yn~~~s~~~~~a~~l~~~fe~~~~~ 89 (91)
..++.++.|+-+|-.++..+=..|.++.+.|.+.++.
T Consensus 590 E~ir~~l~~~PKyGNDdd~vD~ia~~i~~~~~~~v~~ 626 (787)
T 1r9d_A 590 EEIQALLKNAPKFGNDIDEVDNLAREGALVYCREVNK 626 (787)
T ss_dssp HHHHHHHHTSCCTTSCCHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhccCCCCCCCcHHHHHHHHHHHHHHHHHHHc
Confidence 5677788887677666667778899998888887753
No 53
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=28.11 E-value=59 Score=17.22 Aligned_cols=23 Identities=4% Similarity=0.031 Sum_probs=17.3
Q ss_pred CCHHHHHHHHhcCCCCCHHHHHH
Q psy7968 31 MDFGTIKHKLNMFQYRNNSEVLF 53 (91)
Q Consensus 31 mdL~~I~~rl~~~~Y~s~~~f~~ 53 (91)
|.|..|.+-|.....-++.++..
T Consensus 2 m~L~~Il~~L~~~g~vsv~eLa~ 24 (78)
T 1xn7_A 2 ASLIQVRDLLALRGRMEAAQISQ 24 (78)
T ss_dssp CCHHHHHHHHHHSCSBCHHHHHH
T ss_pred chHHHHHHHHHHcCCCcHHHHHH
Confidence 77888888888777777766643
No 54
>1rp3_B Anti sigma factor FLGM; transcription; 2.30A {Aquifex aeolicus} SCOP: a.137.11.1 PDB: 1sc5_B
Probab=26.70 E-value=83 Score=17.03 Aligned_cols=23 Identities=17% Similarity=0.299 Sum_probs=15.6
Q ss_pred HHHHHHHHhcCCCC-CHHHHHHHH
Q psy7968 33 FGTIKHKLNMFQYR-NNSEVLFDC 55 (91)
Q Consensus 33 L~~I~~rl~~~~Y~-s~~~f~~D~ 55 (91)
...|++.|.+|.|. +.+.+.+-|
T Consensus 60 V~~iK~aI~~GtY~vd~~~iA~km 83 (88)
T 1rp3_B 60 VKELKEKIEKGEYEVSDEKVVKGL 83 (88)
T ss_dssp HHHHHHHHHTTCCCCCHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCHHHHHHHH
Confidence 35688899999997 455544443
No 55
>3hot_A Transposable element mariner, complete CDS; protein-DNA complex, synaptic complex, transposase, inverted DNA, DNA binding protein-DNA complex; HET: 5IU; 3.25A {Drosophila mauritiana} PDB: 3hos_A*
Probab=26.54 E-value=66 Score=21.07 Aligned_cols=32 Identities=22% Similarity=0.280 Sum_probs=25.8
Q ss_pred cCC---HHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Q psy7968 30 PMD---FGTIKHKLNMFQYRNNSEVLFDCNLVFDN 61 (91)
Q Consensus 30 Pmd---L~~I~~rl~~~~Y~s~~~f~~D~~li~~N 61 (91)
|++ ++.++..+....+.+.+++...+..-|..
T Consensus 282 pie~~~~~~lk~~~~~~~~~~~~~l~~~i~~~~~~ 316 (345)
T 3hot_A 282 PSDYHLFASMGHALAEQRFDSYESVKKWLDEWFAA 316 (345)
T ss_dssp HHHHTHHHHHHHHHTTCCCSSHHHHHHHHHHHHHH
T ss_pred cccchhhHHHHHHhccccCCCHHHHHHHHHHHHHH
Confidence 555 57888889888899999999888777753
No 56
>3mp7_B Preprotein translocase subunit SECE; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus}
Probab=26.40 E-value=39 Score=17.33 Aligned_cols=30 Identities=3% Similarity=-0.186 Sum_probs=20.7
Q ss_pred CHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHH
Q psy7968 47 NNSEVLFDCNLVFDNCFAYNKEDSEIYEPTIK 78 (91)
Q Consensus 47 s~~~f~~D~~li~~Na~~yn~~~s~~~~~a~~ 78 (91)
.+.+|.+|.++++.-|. -++..++.+.|+.
T Consensus 7 ~~~~f~kd~~rvlk~~~--KPd~~Ef~~iak~ 36 (61)
T 3mp7_B 7 RIRHFWKESRRAFLVTK--KPNWATYKRAAKI 36 (61)
T ss_dssp -CTTHHHHHTHHHHHSC--CCCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhc--CCCHHHHHHHHHH
Confidence 46789999999999988 3444555555443
No 57
>3dor_A Protein CT_858, CPAF; mature CPAF, dimer, transferase; 2.20A {Chlamydia trachomatis} PDB: 3dpm_A* 3dpn_A 3dja_A
Probab=25.32 E-value=63 Score=24.02 Aligned_cols=33 Identities=9% Similarity=-0.102 Sum_probs=28.1
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhh
Q psy7968 33 FGTIKHKLNMFQYRNNSEVLFDCNLVFDNCFAY 65 (91)
Q Consensus 33 L~~I~~rl~~~~Y~s~~~f~~D~~li~~Na~~y 65 (91)
+..++.|++.+.+.|-.+|..+++.+|....-.
T Consensus 40 l~~ir~kl~~e~~~Te~dFq~~L~~~fasl~DG 72 (583)
T 3dor_A 40 SVSAQQKLRTQENPSTSFCQQVLADFIGGLNDF 72 (583)
T ss_dssp HHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHccCCCCHHHHHHHHHHHHhhcCCC
Confidence 456999999999999999999999998765533
No 58
>2wwb_B SEC61gamma, protein transport protein SEC61 subunit gamma; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Canis lupus familiaris}
Probab=24.47 E-value=85 Score=16.41 Aligned_cols=21 Identities=10% Similarity=0.132 Sum_probs=17.7
Q ss_pred CCCCHHHHHHHHHHHHHHHhh
Q psy7968 44 QYRNNSEVLFDCNLVFDNCFA 64 (91)
Q Consensus 44 ~Y~s~~~f~~D~~li~~Na~~ 64 (91)
....+.+|.+|..+++.-|.+
T Consensus 7 ~~e~~~~f~k~~~r~lk~~~K 27 (68)
T 2wwb_B 7 FVEPSRQFVKDSIRLVKRCTK 27 (68)
T ss_dssp SSTTHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHHHHhcC
Confidence 446789999999999998873
No 59
>3oiq_B DNA polymerase alpha catalytic subunit A; OB fold, dimer, dimeric complex, protein binding; HET: DNA; 2.40A {Saccharomyces cerevisiae}
Probab=24.03 E-value=43 Score=15.14 Aligned_cols=21 Identities=14% Similarity=0.191 Sum_probs=11.9
Q ss_pred CHHHHHHHHhcCCCCCHHHHHHHHH
Q psy7968 32 DFGTIKHKLNMFQYRNNSEVLFDCN 56 (91)
Q Consensus 32 dL~~I~~rl~~~~Y~s~~~f~~D~~ 56 (91)
-+...+.|..+ .++++.+|++
T Consensus 4 Ks~~~K~R~~n----Dvq~Ll~DVE 24 (36)
T 3oiq_B 4 KLQSRKLRYAN----DVQDLLDDVE 24 (36)
T ss_dssp HHHHHHHHHHH----HHHHHHHHHH
T ss_pred hhHHHHHHHHh----hHHHHHHHhh
Confidence 34445555554 5677777764
No 60
>2bj7_A Nickel responsive regulator; transcription, repressor, NIKR, DNA- binding, metal-binding, transcription regulation; HET: PG4; 2.1A {Pyrococcus horikoshii} SCOP: a.43.1.3 d.58.18.4 PDB: 2bj1_A 2bj3_A* 2bj8_A* 2bj9_A*
Probab=23.76 E-value=87 Score=18.30 Aligned_cols=31 Identities=19% Similarity=0.161 Sum_probs=23.0
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHHHh
Q psy7968 33 FGTIKHKLNMFQYRNNSEVLFDCNLVFDNCF 63 (91)
Q Consensus 33 L~~I~~rl~~~~Y~s~~~f~~D~~li~~Na~ 63 (91)
+..|.+.++.+.|.|-++|++|.-.-+-...
T Consensus 15 ~~~ld~~v~~~~y~sRSe~Ir~air~~l~~~ 45 (138)
T 2bj7_A 15 LEKFDQIIEEIGYENRSEAIRDLIRDFIIRH 45 (138)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 4567777888889999999999766544333
No 61
>3s93_A Tudor domain-containing protein 5; structural genomics consortium, SGC, transcription; 2.28A {Homo sapiens}
Probab=23.56 E-value=20 Score=20.29 Aligned_cols=31 Identities=23% Similarity=0.494 Sum_probs=20.6
Q ss_pred chhhhcCCcCCHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q psy7968 22 DYHRIIGKPMDFGTIKHKLNMFQYRNNSEVLFDCNLVF 59 (91)
Q Consensus 22 ~Y~~~I~~PmdL~~I~~rl~~~~Y~s~~~f~~D~~li~ 59 (91)
||.....+|+.+.. -.|.++++|..++--++
T Consensus 35 dYr~~~G~~iP~r~-------lGy~sl~~fL~sipdvv 65 (102)
T 3s93_A 35 EYLLMVGNHLPLRI-------LGYRSTMELVLDMPDVV 65 (102)
T ss_dssp HHHHHHSSCCCTGG-------GTCSSHHHHHHTCTTTE
T ss_pred HHHHHcCCcCCchh-------cCcCCHHHHHHcCCCeE
Confidence 46666666655432 45899999999886443
No 62
>2a3d_A Protein (de novo three-helix bundle); NMR {Synthetic construct} SCOP: k.9.1.1
Probab=22.99 E-value=87 Score=15.97 Aligned_cols=40 Identities=13% Similarity=0.035 Sum_probs=31.4
Q ss_pred HHHHHHHHhc--CCCCCHHHHHHHHHHHHHHHhhhcCCCCHH
Q psy7968 33 FGTIKHKLNM--FQYRNNSEVLFDCNLVFDNCFAYNKEDSEI 72 (91)
Q Consensus 33 L~~I~~rl~~--~~Y~s~~~f~~D~~li~~Na~~yn~~~s~~ 72 (91)
|..|+.||+. |.-..+..|...+...-+.-..|.+.+.+-
T Consensus 11 laaiktrlqalggseaelaafekeiaafeselqaykgkgnpe 52 (73)
T 2a3d_A 11 LAAIKTRLQALGGSEAELAAFEKEIAAFESELQAYKGKGNPE 52 (73)
T ss_dssp HHHHHHHHHHCSSGGGTHHHHHHHHHHHHHHHHHSSSCCSST
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhccCCChH
Confidence 5678888874 556688899999988888888898877553
No 63
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=22.69 E-value=33 Score=19.62 Aligned_cols=27 Identities=19% Similarity=0.208 Sum_probs=18.7
Q ss_pred HHHHHHhhhcCCCCHHHHHHHHHHHHHH
Q psy7968 57 LVFDNCFAYNKEDSEIYEPTIKLNTFLS 84 (91)
Q Consensus 57 li~~Na~~yn~~~s~~~~~a~~l~~~fe 84 (91)
-|+.||...|...+..|.. .-|++.++
T Consensus 14 AMVsnAQLDNEKsal~YqV-dlLKD~LE 40 (103)
T 4h22_A 14 AMVSNAQLDNEKTNFMYQV-DTLKDMLL 40 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHH-HHHHHHHH
Confidence 5899999999977777753 44444433
No 64
>4a01_A Proton pyrophosphatase; hydrolase, membrane protein, proton pumping; HET: DMU; 2.35A {Vigna radiata}
Probab=22.17 E-value=56 Score=25.12 Aligned_cols=20 Identities=20% Similarity=0.421 Sum_probs=15.8
Q ss_pred HHHHHhhh----------c--CCCCHHHHHHH
Q psy7968 58 VFDNCFAY----------N--KEDSEIYEPTI 77 (91)
Q Consensus 58 i~~Na~~y----------n--~~~s~~~~~a~ 77 (91)
-|+||++| + +++|+.|++|.
T Consensus 689 AWDNAKKyIE~G~~~~~~~~ggKGSeaHkAaV 720 (766)
T 4a01_A 689 AWDNAKKYIEAGASEHARSLGPKGSDCHKAAV 720 (766)
T ss_dssp HHHHHHHHHHHCCSHHHHTTCSTTSHHHHHHH
T ss_pred hHHhHHHHHHccccccccccCCCCchhhcccc
Confidence 49999997 2 56799998875
No 65
>1m3w_A H10H24; four-helix bundle, heme binding, maquette, heme binding protein, electron transport, de novo protein; 2.80A {Synthetic} SCOP: k.8.1.1
Probab=21.44 E-value=64 Score=13.90 Aligned_cols=19 Identities=21% Similarity=0.193 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q psy7968 71 EIYEPTIKLNTFLSCLCHL 89 (91)
Q Consensus 71 ~~~~~a~~l~~~fe~~~~~ 89 (91)
++++...+..+.|++.+++
T Consensus 5 eiwklheeflkkfeellkl 23 (32)
T 1m3w_A 5 EIWKLHEEFLKKFEELLKL 23 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 4566666666777776653
No 66
>4av3_A K(+)-stimulated pyrophosphate-energized sodium PU; hydrolase, membrane pyrophosphotase, ION pump; 2.60A {Thermotoga maritima} PDB: 4av6_A
Probab=20.85 E-value=62 Score=24.79 Aligned_cols=23 Identities=22% Similarity=0.179 Sum_probs=16.9
Q ss_pred HHHHHHHhhhc--------CCCCHHHHHHHH
Q psy7968 56 NLVFDNCFAYN--------KEDSEIYEPTIK 78 (91)
Q Consensus 56 ~li~~Na~~yn--------~~~s~~~~~a~~ 78 (91)
-=-|+||++|= +++|+.|++|.-
T Consensus 665 GGAWDNAKK~iE~G~~g~~gKgS~aHkAaVv 695 (735)
T 4av3_A 665 GGAWDNAKKYLEAGNLEGYGKGSEPHKALVI 695 (735)
T ss_dssp HHHHHHHHHHHHTSCSSSCCSSSHHHHHHHH
T ss_pred ccHHhhhHHhhccCCCCCCCCCChhhcCccc
Confidence 33499999982 467899988753
No 67
>1pp5_A Microcin J25; lariat, protoknot, backbone-sidechain amide linkage, structu genomics, PSI, protein structure initiative; NMR {Escherichia coli} SCOP: j.5.1.1 PDB: 1q71_A
Probab=20.24 E-value=13 Score=15.40 Aligned_cols=15 Identities=47% Similarity=0.935 Sum_probs=11.9
Q ss_pred CCcchhhhcCCcCCH
Q psy7968 19 PVPDYHRIIGKPMDF 33 (91)
Q Consensus 19 ~~p~Y~~~I~~PmdL 33 (91)
.+|+|.--|..|+++
T Consensus 5 hvpeyfvgigtpisf 19 (26)
T 1pp5_A 5 HVPEYFVGIGTPISF 19 (26)
T ss_dssp SEECCCSSSSCCCSE
T ss_pred cCcceeEecCCCeEE
Confidence 568888888888864
Done!