RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7968
(91 letters)
>3fkm_X Signaling protein; bromodomain, malaria, structural genomics,
structural genomi consortium, SGC; 2.50A {Plasmodium
falciparum 3D7}
Length = 166
Score = 89.9 bits (223), Expect = 1e-24
Identities = 25/63 (39%), Positives = 33/63 (52%)
Query: 20 VPDYHRIIGKPMDFGTIKHKLNMFQYRNNSEVLFDCNLVFDNCFAYNKEDSEIYEPTIKL 79
PDY+ +I PM F IK KL QY SE + D L+FDNC YN +S + +
Sbjct: 53 CPDYYDVIKNPMSFSCIKTKLKKGQYAYPSEFVKDVQLIFDNCSLYNTSNSVVAITGKNI 112
Query: 80 NTF 82
T+
Sbjct: 113 ETY 115
>4alg_A Bromodomain-containing protein 2; signaling protein, inhibitor,
histone, epigenetic reader; HET: 1GH; 1.60A {Homo
sapiens} PDB: 4a9e_A 4a9h_A* 4a9i_A* 4a9j_A* 4a9m_A*
4a9n_A* 4a9o_A* 4a9p_A* 4a9f_A* 4alh_A* 4akn_A* 2yek_A*
2ydw_A* 2yw5_A
Length = 154
Score = 88.6 bits (220), Expect = 2e-24
Identities = 27/63 (42%), Positives = 35/63 (55%)
Query: 20 VPDYHRIIGKPMDFGTIKHKLNMFQYRNNSEVLFDCNLVFDNCFAYNKEDSEIYEPTIKL 79
+PDYH+II +PMD GTIK +L Y SE + D N +F NC+ YNK +I L
Sbjct: 64 LPDYHKIIKQPMDMGTIKRRLENNYYWAASECMQDFNTMFTNCYIYNKPTDDIVLMAQTL 123
Query: 80 NTF 82
Sbjct: 124 EKI 126
>2ouo_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural
genomics consortium, SGC, signaling protein; 1.89A {Homo
sapiens} PDB: 2yem_A*
Length = 130
Score = 87.4 bits (217), Expect = 4e-24
Identities = 26/63 (41%), Positives = 32/63 (50%)
Query: 20 VPDYHRIIGKPMDFGTIKHKLNMFQYRNNSEVLFDCNLVFDNCFAYNKEDSEIYEPTIKL 79
+ DY II PMD TIK KL +YR+ E D L+F NC+ YN D E+ KL
Sbjct: 57 LHDYCDIIKHPMDMSTIKSKLEAREYRDAQEFGADVRLMFSNCYKYNPPDHEVVAMARKL 116
Query: 80 NTF 82
Sbjct: 117 QDV 119
>3g0l_A Hwalp4, bromodomain adjacent to zinc finger domain protei; BAZB2,
KIAA1 WALP4, structural genomics consortium, SGC,
transcription; 2.03A {Homo sapiens} PDB: 3q2f_A* 2e7o_A
Length = 117
Score = 86.6 bits (215), Expect = 6e-24
Identities = 27/63 (42%), Positives = 37/63 (58%)
Query: 20 VPDYHRIIGKPMDFGTIKHKLNMFQYRNNSEVLFDCNLVFDNCFAYNKEDSEIYEPTIKL 79
VP Y ++I KPMDF TI+ KL+ QY N D LVFDNC +N++DS+I +
Sbjct: 43 VPGYKKVIKKPMDFSTIREKLSSGQYPNLETFALDVRLVFDNCETFNEDDSDIGRAGHNM 102
Query: 80 NTF 82
+
Sbjct: 103 RKY 105
>3jvl_A Bromodomain-containing protein 4; alpha helical, N-acetyl lysine
binding domain, signaling protein; 1.20A {Mus musculus}
PDB: 3jvm_A 2dww_A 2i8n_A 3oni_A* 2dvv_A* 2e3k_A* 2g4a_A
3s92_A* 2oo1_A* 2e7n_A 2wp1_A*
Length = 120
Score = 86.2 bits (214), Expect = 7e-24
Identities = 26/63 (41%), Positives = 32/63 (50%)
Query: 20 VPDYHRIIGKPMDFGTIKHKLNMFQYRNNSEVLFDCNLVFDNCFAYNKEDSEIYEPTIKL 79
+ DY II PMD TIK KL +YR+ E D L+F NC+ YN D E+ KL
Sbjct: 44 LHDYCDIIKHPMDMSTIKSKLESREYRDAQEFGADVRLMFSNCYKYNPPDHEVVAMARKL 103
Query: 80 NTF 82
Sbjct: 104 QDV 106
>2oss_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural
genomics consortium, SGC, signaling protein; 1.35A {Homo
sapiens} PDB: 2yel_A* 3mxf_A* 3p5o_A* 3svf_A* 3svg_A*
3u5j_A* 3u5k_A* 3u5l_A* 3uvw_A* 3uvx_A* 3uvy_A* 3uw9_A*
3zyu_A* 4a9l_A* 4e96_A* 3jvj_A 3jvk_A* 3muk_A* 3mul_A*
2nxb_A ...
Length = 127
Score = 86.6 bits (215), Expect = 8e-24
Identities = 26/63 (41%), Positives = 34/63 (53%)
Query: 20 VPDYHRIIGKPMDFGTIKHKLNMFQYRNNSEVLFDCNLVFDNCFAYNKEDSEIYEPTIKL 79
+PDY++II PMD GTIK +L Y N E + D N +F NC+ YNK +I L
Sbjct: 53 LPDYYKIIKTPMDMGTIKKRLENNYYWNAQECIQDFNTMFTNCYIYNKPGDDIVLMAEAL 112
Query: 80 NTF 82
Sbjct: 113 EKL 115
>3nxb_A CAT eye syndrome critical region protein 2; structural genomics
consortium, SGC, CECR2, CAT eye syndrome chromosome
region candidate 2, bromodomain; 1.83A {Homo sapiens}
Length = 116
Score = 86.2 bits (214), Expect = 8e-24
Identities = 22/63 (34%), Positives = 32/63 (50%)
Query: 20 VPDYHRIIGKPMDFGTIKHKLNMFQYRNNSEVLFDCNLVFDNCFAYNKEDSEIYEPTIKL 79
P+Y++II PMD +++ KLN Y E + D +F NC YN E SE + + L
Sbjct: 46 APNYYQIIKAPMDISSMEKKLNGGLYCTKEEFVNDMKTMFRNCRKYNGESSEYTKMSDNL 105
Query: 80 NTF 82
Sbjct: 106 ERC 108
>2d9e_A Peregrin; four-helix bundle, transcription activator, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 121
Score = 86.3 bits (214), Expect = 8e-24
Identities = 25/63 (39%), Positives = 34/63 (53%)
Query: 20 VPDYHRIIGKPMDFGTIKHKLNMFQYRNNSEVLFDCNLVFDNCFAYNKEDSEIYEPTIKL 79
VPDY I KPMDF T+K L ++Y N + D NL+ NC YN +D+ Y ++L
Sbjct: 37 VPDYLDHIKKPMDFFTMKQNLEAYRYLNFDDFEEDFNLIVSNCLKYNAKDTIFYRAAVRL 96
Query: 80 NTF 82
Sbjct: 97 REQ 99
>3d7c_A General control of amino acid synthesis protein 5; GCN5,
bromodomain, structural genomics consortium, SGC,
HOST-virus interaction, nucleus; 2.06A {Homo sapiens}
SCOP: a.29.2.1 PDB: 1f68_A 1jm4_B* 1n72_A 1wug_A*
1wum_A* 1zs5_A* 2rnw_A* 2rnx_A* 3gg3_A
Length = 112
Score = 85.8 bits (213), Expect = 1e-23
Identities = 20/63 (31%), Positives = 26/63 (41%)
Query: 20 VPDYHRIIGKPMDFGTIKHKLNMFQYRNNSEVLFDCNLVFDNCFAYNKEDSEIYEPTIKL 79
PDY+ +I P+D T+ +L Y + D V NC YN DSE L
Sbjct: 37 APDYYEVIRFPIDLKTMTERLRSRYYVTRKLFVADLQRVIANCREYNPPDSEYCRCASAL 96
Query: 80 NTF 82
F
Sbjct: 97 EKF 99
>2yyn_A Transcription intermediary factor 1-alpha; bromo domain, structural
genomics, NPPSFA; 2.50A {Homo sapiens}
Length = 135
Score = 86.3 bits (214), Expect = 1e-23
Identities = 27/71 (38%), Positives = 39/71 (54%), Gaps = 6/71 (8%)
Query: 18 EPV----PDYHRIIGKPMDFGTIKHKL--NMFQYRNNSEVLFDCNLVFDNCFAYNKEDSE 71
+PV PDY++II PMD TIK +L + Y + + D L+F NC +N+ DSE
Sbjct: 43 DPVPLTVPDYYKIIKNPMDLSTIKKRLQEDYSMYSKPEDFVADFRLIFQNCAEFNEPDSE 102
Query: 72 IYEPTIKLNTF 82
+ IKL +
Sbjct: 103 VANAGIKLENY 113
>3p1f_A CREB-binding protein; structural genomics consortium, SGC, CBP,
crebbp, CREB bindi protein isoform A, KAT3A, RSTS, RST,
bromodomain, transcrip; HET: 3PF; 1.63A {Homo sapiens}
PDB: 3dwy_A 3p1d_A 3p1c_A 3p1e_A* 3svh_A* 4a9k_A*
1jsp_B* 2d82_A* 2l84_A* 2l85_A* 2rny_A* 3i3j_A
Length = 119
Score = 85.4 bits (212), Expect = 2e-23
Identities = 24/63 (38%), Positives = 37/63 (58%)
Query: 20 VPDYHRIIGKPMDFGTIKHKLNMFQYRNNSEVLFDCNLVFDNCFAYNKEDSEIYEPTIKL 79
+PDY I+ PMD TIK KL+ QY+ + + D L+F+N + YN++ S +Y+ KL
Sbjct: 44 IPDYFDIVKNPMDLSTIKRKLDTGQYQEPWQYVDDVWLMFNNAWLYNRKTSRVYKFCSKL 103
Query: 80 NTF 82
Sbjct: 104 AEV 106
>1e6i_A Transcriptional activator GCN5; gene regulation, bromodomain,
histone binding, N-acetyl lysine; HET: ALY; 1.87A
{Saccharomyces cerevisiae} SCOP: a.29.2.1
Length = 121
Score = 85.1 bits (211), Expect = 2e-23
Identities = 24/63 (38%), Positives = 38/63 (60%)
Query: 20 VPDYHRIIGKPMDFGTIKHKLNMFQYRNNSEVLFDCNLVFDNCFAYNKEDSEIYEPTIKL 79
VPDY+ I +PMD T++ KL +Y+ + ++D LVF+NC YN E++ Y+ +L
Sbjct: 43 VPDYYDFIKEPMDLSTMEIKLESNKYQKMEDFIYDARLVFNNCRMYNGENTSYYKYANRL 102
Query: 80 NTF 82
F
Sbjct: 103 EKF 105
>3tlp_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180,
polybromo-1D, PBRM1, BRG associated factor 180,
structural genomics consortium, SGC; 2.13A {Homo
sapiens}
Length = 150
Score = 85.2 bits (211), Expect = 5e-23
Identities = 22/64 (34%), Positives = 34/64 (53%)
Query: 20 VPDYHRIIGKPMDFGTIKHKLNMFQYRNNSEVLFDCNLVFDNCFAYNKEDSEIYEPTIKL 79
PDY++II +PMD I+H + +Y ++ D L+F N YN+E S++Y L
Sbjct: 61 YPDYYKIILEPMDLKIIEHNIRNDKYAGEEGMIEDMKLMFRNARHYNEEGSQVYNDAHIL 120
Query: 80 NTFL 83
L
Sbjct: 121 EKLL 124
>3rcw_A Bromodomain-containing protein 1; transcription, structural
genomics, structural consortium, SGC; 2.21A {Homo
sapiens}
Length = 135
Score = 84.8 bits (210), Expect = 5e-23
Identities = 24/63 (38%), Positives = 33/63 (52%)
Query: 20 VPDYHRIIGKPMDFGTIKHKLNMFQYRNNSEVLFDCNLVFDNCFAYNKEDSEIYEPTIKL 79
VPDY I PMDF T++ +L Y+N E D +L+ DNC YN D+ Y ++L
Sbjct: 43 VPDYLDHIKHPMDFATMRKRLEAQGYKNLHEFEEDFDLIIDNCMKYNARDTVFYRAAVRL 102
Query: 80 NTF 82
Sbjct: 103 RDQ 105
>3mb4_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180,
polybromo-1D, PBRM1, BRG associated factor 180,
structural genomics consortium, SGC; 1.66A {Homo
sapiens} PDB: 3g0j_A 2yqd_A
Length = 124
Score = 83.9 bits (208), Expect = 8e-23
Identities = 20/64 (31%), Positives = 37/64 (57%)
Query: 20 VPDYHRIIGKPMDFGTIKHKLNMFQYRNNSEVLFDCNLVFDNCFAYNKEDSEIYEPTIKL 79
+PDY+ I KPMD I+ + +Y++ ++ D ++F+N YN+ +S IY+ + L
Sbjct: 51 LPDYYLTIKKPMDMEKIRSHMMANKYQDIDSMVEDFVMMFNNACTYNEPESLIYKDALVL 110
Query: 80 NTFL 83
+ L
Sbjct: 111 HKVL 114
>3k2j_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180,
polybromo01D, PBRM1, BRG associated factor 180,
structural genomics consortium, SGC; 2.20A {Homo
sapiens}
Length = 130
Score = 83.6 bits (207), Expect = 1e-22
Identities = 21/64 (32%), Positives = 33/64 (51%)
Query: 20 VPDYHRIIGKPMDFGTIKHKLNMFQYRNNSEVLFDCNLVFDNCFAYNKEDSEIYEPTIKL 79
PDY++ I P+ I+ KL +Y + D NL+F+N YN +S IY+ +KL
Sbjct: 53 YPDYYQQIKMPISLQQIRTKLKNQEYETLDHLECDLNLMFENAKRYNVPNSAIYKRVLKL 112
Query: 80 NTFL 83
+
Sbjct: 113 QQVM 116
>2i7k_A Bromodomain-containing protein 7; helix, LEFT-handed four-helix
bundle, transcription; NMR {Homo sapiens}
Length = 117
Score = 82.8 bits (205), Expect = 2e-22
Identities = 21/63 (33%), Positives = 31/63 (49%)
Query: 20 VPDYHRIIGKPMDFGTIKHKLNMFQYRNNSEVLFDCNLVFDNCFAYNKEDSEIYEPTIKL 79
P Y II PMDF T+K K+ Y++ E+ + L+ N YNK ++ Y+ KL
Sbjct: 38 APGYSMIIKHPMDFSTMKEKIKNNDYQSIEELKDNFKLMCTNAMIYNKPETIYYKAAKKL 97
Query: 80 NTF 82
Sbjct: 98 LHS 100
>3hme_A Bromodomain-containing protein 9; BRD9, bromodomain containing 9
isoform 1, LAVS3040, rhabdomyosarcoma antigen
MU-RMS-40.8; 2.23A {Homo sapiens}
Length = 123
Score = 82.8 bits (205), Expect = 2e-22
Identities = 23/63 (36%), Positives = 34/63 (53%)
Query: 20 VPDYHRIIGKPMDFGTIKHKLNMFQYRNNSEVLFDCNLVFDNCFAYNKEDSEIYEPTIKL 79
P Y II PMDFGT+K K+ +Y++ +E D L+ DN YN+ D+ Y+ K+
Sbjct: 43 APGYSMIIKHPMDFGTMKDKIVANEYKSVTEFKADFKLMCDNAMTYNRPDTVYYKLAKKI 102
Query: 80 NTF 82
Sbjct: 103 LHA 105
>2dkw_A Hypothetical protein KIAA1240; bromodomain-like, five-helix,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 131
Score = 82.9 bits (205), Expect = 2e-22
Identities = 18/66 (27%), Positives = 29/66 (43%)
Query: 18 EPVPDYHRIIGKPMDFGTIKHKLNMFQYRNNSEVLFDCNLVFDNCFAYNKEDSEIYEPTI 77
+PV DY +I +PMD T+ K++ Y + L D +L+ N YN + +
Sbjct: 35 KPVSDYLEVIKEPMDLSTVITKIDKHNYLTAKDFLKDIDLICSNALEYNPDKDPGDKIIR 94
Query: 78 KLNTFL 83
L
Sbjct: 95 HRACTL 100
>2grc_A Probable global transcription activator SNF2L4; bromodomain, BRG1,
chromatin remodelling, acely-lysine binding,
protein-protein interactions; 1.50A {Homo sapiens} PDB:
3uvd_A 2h60_A
Length = 129
Score = 82.4 bits (204), Expect = 3e-22
Identities = 22/64 (34%), Positives = 38/64 (59%)
Query: 20 VPDYHRIIGKPMDFGTIKHKLNMFQYRNNSEVLFDCNLVFDNCFAYNKEDSEIYEPTIKL 79
+P+Y+ +I KP+DF IK ++ +YR+ +++ D L+ N +N E S IYE +I L
Sbjct: 48 LPEYYELIRKPVDFKKIKERIRNHKYRSLNDLEKDVMLLCQNAQTFNLEGSLIYEDSIVL 107
Query: 80 NTFL 83
+
Sbjct: 108 QSVF 111
>3uv4_A Second bromodomain of human transcription initiat TFIID subunit 1
(TAF1); structural genomics consortium, SGC; 1.89A {Homo
sapiens} PDB: 3hmh_A
Length = 158
Score = 83.0 bits (205), Expect = 4e-22
Identities = 19/63 (30%), Positives = 34/63 (53%)
Query: 20 VPDYHRIIGKPMDFGTIKHKLNMFQYRNNSEVLFDCNLVFDNCFAYNKEDSEIYEPTIKL 79
VPDY+++I PMD TI+ ++ +Y++ L D NL+ N YN +S+ + ++
Sbjct: 60 VPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKYNGPESQYTKTAQEI 119
Query: 80 NTF 82
Sbjct: 120 VNV 122
>3aad_A Transcription initiation factor TFIID subunit 1; protein-protein
complex, bromodomain, transcription, transcr regulation,
chromatin regulator, transcription-C complex; 3.30A
{Homo sapiens}
Length = 292
Score = 85.8 bits (212), Expect = 4e-22
Identities = 19/63 (30%), Positives = 34/63 (53%)
Query: 20 VPDYHRIIGKPMDFGTIKHKLNMFQYRNNSEVLFDCNLVFDNCFAYNKEDSEIYEPTIKL 79
VPDY+++I PMD TI+ ++ +Y++ L D NL+ N YN +S+ + ++
Sbjct: 200 VPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKYNGPESQYTKTAQEI 259
Query: 80 NTF 82
Sbjct: 260 VNV 262
Score = 76.2 bits (187), Expect = 2e-18
Identities = 15/54 (27%), Positives = 24/54 (44%)
Query: 20 VPDYHRIIGKPMDFGTIKHKLNMFQYRNNSEVLFDCNLVFDNCFAYNKEDSEIY 73
V DY++II +PMD T++ + Y + E L+ N YN +
Sbjct: 77 VKDYYKIITRPMDLQTLRENVRKRLYPSREEFREHLELIVKNSATYNGPKHSLT 130
>3uv5_A Transcription initiation factor TFIID subunit 1; tandem
bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS
factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A
Length = 265
Score = 85.4 bits (211), Expect = 4e-22
Identities = 19/63 (30%), Positives = 34/63 (53%)
Query: 20 VPDYHRIIGKPMDFGTIKHKLNMFQYRNNSEVLFDCNLVFDNCFAYNKEDSEIYEPTIKL 79
VPDY+++I PMD TI+ ++ +Y++ L D NL+ N YN +S+ + ++
Sbjct: 167 VPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKYNGPESQYTKTAQEI 226
Query: 80 NTF 82
Sbjct: 227 VNV 229
Score = 75.7 bits (186), Expect = 2e-18
Identities = 15/55 (27%), Positives = 25/55 (45%)
Query: 20 VPDYHRIIGKPMDFGTIKHKLNMFQYRNNSEVLFDCNLVFDNCFAYNKEDSEIYE 74
V DY++II +PMD T++ + Y + E L+ N YN + +
Sbjct: 44 VKDYYKIITRPMDLQTLRENVRKRLYPSREEFREHLELIVKNSATYNGPKHSLTQ 98
>2dat_A Possible global transcription activator SNF2L2; bromodomain, all
alpha protein, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 123
Score = 82.0 bits (203), Expect = 4e-22
Identities = 22/64 (34%), Positives = 38/64 (59%)
Query: 20 VPDYHRIIGKPMDFGTIKHKLNMFQYRNNSEVLFDCNLVFDNCFAYNKEDSEIYEPTIKL 79
+P+Y+ +I KP+DF IK ++ +YR+ ++ D L+ N +N E S+IYE +I L
Sbjct: 49 LPEYYELIRKPVDFKKIKERIRNHKYRSLGDLEKDVMLLCHNAQTFNLEGSQIYEDSIVL 108
Query: 80 NTFL 83
+
Sbjct: 109 QSVF 112
>3q2e_A Bromodomain and WD repeat-containing protein 1; structural genomics
consortium, SGC, cell cycle progression, signal
transduction, apoptosis; 1.74A {Homo sapiens}
Length = 123
Score = 82.0 bits (203), Expect = 4e-22
Identities = 25/64 (39%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 20 VPDYHRIIGKPMDFGTIKHKLNMFQYRNNSEVLFDCNLVFDNCFAYN-KEDSEIYEPTIK 78
PDY II PMDFGT++ L+ Y + E D L+F N AY + S+IY T++
Sbjct: 40 YPDYRDIIDTPMDFGTVRETLDAGNYDSPLEFCKDIRLIFSNAKAYTPNKRSKIYSMTLR 99
Query: 79 LNTF 82
L+
Sbjct: 100 LSAL 103
>3mb3_A PH-interacting protein; PHIP, pleckstrin homology domain
interacting protein, DCAF14 DDB1 and CUL4 associated
factor 14, SGC; 2.25A {Homo sapiens}
Length = 135
Score = 82.1 bits (203), Expect = 5e-22
Identities = 24/64 (37%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 20 VPDYHRIIGKPMDFGTIKHKLNMFQYRNNSEVLFDCNLVFDNCFAYNK-EDSEIYEPTIK 78
PDY II PMDF T++ L Y + E+ D L+F N AY + S IY +++
Sbjct: 51 YPDYRDIIDTPMDFATVRETLEAGNYESPMELCKDVRLIFSNSKAYTPSKRSRIYSMSLR 110
Query: 79 LNTF 82
L+ F
Sbjct: 111 LSAF 114
>3iu5_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180,
polybromo0ID, PBRM1, BRG associated factor 180,
structural genomics, SGC; 1.63A {Homo sapiens}
Length = 116
Score = 81.6 bits (202), Expect = 5e-22
Identities = 21/63 (33%), Positives = 35/63 (55%)
Query: 20 VPDYHRIIGKPMDFGTIKHKLNMFQYRNNSEVLFDCNLVFDNCFAYNKEDSEIYEPTIKL 79
PDY+ ++ +P+D I+ KL M +Y + + + D L+F+N +Y K DS Y+ KL
Sbjct: 41 QPDYYEVVSQPIDLMKIQQKLKMEEYDDVNLLTADFQLLFNNAKSYYKPDSPEYKAACKL 100
Query: 80 NTF 82
Sbjct: 101 WDL 103
>3ljw_A Protein polybromo-1; alpha helix, alternative splicing,
bromodomain, chromatin RE DNA-binding, nucleus,
phosphoprotein, transcription; 1.50A {Homo sapiens} PDB:
2ktb_B* 3hmf_A
Length = 120
Score = 80.8 bits (200), Expect = 1e-21
Identities = 16/64 (25%), Positives = 32/64 (50%)
Query: 20 VPDYHRIIGKPMDFGTIKHKLNMFQYRNNSEVLFDCNLVFDNCFAYNKEDSEIYEPTIKL 79
PDY+ II +P+D TI ++ Y++ + D +L+ N YN+ S++++ +
Sbjct: 44 YPDYYAIIKEPIDLKTIAQRIQNGSYKSIHAMAKDIDLLAKNAKTYNEPGSQVFKDANSI 103
Query: 80 NTFL 83
Sbjct: 104 KKIF 107
>2r10_A Chromatin structure-remodeling complex protein RSC4, linker,
histone H3; bromodomain, remodeler, acetylation,
transcription; HET: ALY; 2.20A {Saccharomyces
cerevisiae} PDB: 2r0v_A*
Length = 361
Score = 85.6 bits (211), Expect = 1e-21
Identities = 18/63 (28%), Positives = 30/63 (47%)
Query: 20 VPDYHRIIGKPMDFGTIKHKLNMFQYRNNSEVLFDCNLVFDNCFAYNKEDSEIYEPTIKL 79
+P+Y+ I+ PM +K L + QY + + D LVF N +N + IY+ L
Sbjct: 243 LPEYYEIVHSPMALSIVKQNLEIGQYSKIYDFIIDMLLVFQNAHIFNDPSALIYKDATTL 302
Query: 80 NTF 82
+
Sbjct: 303 TNY 305
Score = 72.5 bits (177), Expect = 7e-17
Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
Query: 20 VPDYHRIIGKPMDFGTIKHKLNMFQYRNNSEVLFDCNLVFDNCFAYNKEDSEIYEPTIKL 79
P Y+ I +PM IK + S L D L+ NC AYN+ DS I + ++++
Sbjct: 110 HPQYYYKIQQPMSINEIKSRDYE-YEDGPSNFLLDVELLTKNCQAYNEYDSLIVKNSMQV 168
Query: 80 NTFLSCLCH 88
+
Sbjct: 169 VMLIEFEVL 177
>2r0y_A Chromatin structure-remodeling complex protein RSC4; bromodomain,
chromatin, remodeler, RSC, acetylation, transcription,
chromatin regulator, nucleus, phosphorylation; HET: ALY;
1.75A {Saccharomyces cerevisiae} PDB: 2r0s_A
Length = 311
Score = 84.4 bits (208), Expect = 2e-21
Identities = 18/63 (28%), Positives = 30/63 (47%)
Query: 20 VPDYHRIIGKPMDFGTIKHKLNMFQYRNNSEVLFDCNLVFDNCFAYNKEDSEIYEPTIKL 79
+P+Y+ I+ PM +K L + QY + + D LVF N +N + IY+ L
Sbjct: 193 LPEYYEIVHSPMALSIVKQNLEIGQYSKIYDFIIDMLLVFQNAHIFNDPSALIYKDATTL 252
Query: 80 NTF 82
+
Sbjct: 253 TNY 255
Score = 73.2 bits (179), Expect = 2e-17
Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
Query: 20 VPDYHRIIGKPMDFGTIKHKLNMFQYRNNSEVLFDCNLVFDNCFAYNKEDSEIYEPTIKL 79
P Y+ I +PM IK + + S L D L+ NC AYN+ DS I + ++++
Sbjct: 60 HPQYYYKIQQPMSINEIKSRDYEY-EDGPSNFLLDVELLTKNCQAYNEYDSLIVKNSMQV 118
Query: 80 NTFLSCLCH 88
+
Sbjct: 119 VMLIEFEVL 127
>3mqm_A Probable histone-lysine N-methyltransferase ASH1L; KIAA1420, absent
small and homeotic disks prote homolog, lysine
N-methyltransferase 2H, KMT2H; 2.54A {Homo sapiens}
Length = 126
Score = 80.5 bits (199), Expect = 2e-21
Identities = 15/64 (23%), Positives = 23/64 (35%)
Query: 20 VPDYHRIIGKPMDFGTIKHKLNMFQYRNNSEVLFDCNLVFDNCFAYNKEDSEIYEPTIKL 79
DY+ I P+D TI+ ++ Y+ D VF N Y S + +L
Sbjct: 45 NADYYEKISDPLDLITIEKQILTGYYKTVEAFDADMLKVFRNAEKYYGRKSPVGRDVCRL 104
Query: 80 NTFL 83
Sbjct: 105 RKAY 108
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger,
alpha-helical bundle, dimethyl-lysine, bromodom
chromatin regulator, metal-binding, nucleus; HET: MLY;
1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A*
3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Length = 174
Score = 80.3 bits (198), Expect = 7e-21
Identities = 22/63 (34%), Positives = 34/63 (53%)
Query: 20 VPDYHRIIGKPMDFGTIKHKLNMFQYRNNSEVLFDCNLVFDNCFAYNKEDSEIYEPTIKL 79
PDY+ +I +PMD T++ ++ Y +E + D +FDNC YN DS Y+ L
Sbjct: 102 APDYYGVIKEPMDLATMEERVQRRYYEKLTEFVADMTKIFDNCRYYNPSDSPFYQCAEVL 161
Query: 80 NTF 82
+F
Sbjct: 162 ESF 164
>3dai_A ATPase family AAA domain-containing protein 2; ancca, AAA+
nuclear coregulator cancer-associated Pro2000 protein,
two AAA DOMA containing protein; 1.95A {Homo sapiens}
PDB: 3lxj_A
Length = 130
Score = 75.9 bits (187), Expect = 1e-19
Identities = 16/58 (27%), Positives = 29/58 (50%)
Query: 16 SVEPVPDYHRIIGKPMDFGTIKHKLNMFQYRNNSEVLFDCNLVFDNCFAYNKEDSEIY 73
+ VPDY +I +PMD ++ K+++ +Y + L D +L+ N YN +
Sbjct: 36 DPDEVPDYVTVIKQPMDLSSVISKIDLHKYLTVKDYLRDIDLICSNALEYNPDRDPGD 93
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger,
bromodomain, H4K16 acetylation, breast C
transcription-protein binding complex; HET: ALY; 1.70A
{Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Length = 184
Score = 75.4 bits (185), Expect = 7e-19
Identities = 26/65 (40%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
Query: 20 VPDYHRIIGKPMDFGTIKHKL--NMFQYRNNSEVLFDCNLVFDNCFAYNKEDSEIYEPTI 77
VPDY++II PMD TIK +L + Y + + D L+F NC +N+ DSE+ I
Sbjct: 110 VPDYYKIIKNPMDLSTIKKRLQEDYSMYSKPEDFVADFRLIFQNCAEFNEPDSEVANAGI 169
Query: 78 KLNTF 82
KL +
Sbjct: 170 KLENY 174
>3iu6_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180,
polybromo0ID, PBRM1, BRG associated factor 180,
structural genomics, SGC; HET: OCS; 1.79A {Homo sapiens}
Length = 147
Score = 68.8 bits (168), Expect = 1e-16
Identities = 18/71 (25%), Positives = 29/71 (40%)
Query: 12 SATFSVEPVPDYHRIIGKPMDFGTIKHKLNMFQYRNNSEVLFDCNLVFDNCFAYNKEDSE 71
S + + P D + P+ F I+ + +YR V + N+ DSE
Sbjct: 31 SDSLAEIPAVDPNFPNKPPLTFDIIRKNVENNRYRRLDLFQEHMFEVLERARRMNRTDSE 90
Query: 72 IYEPTIKLNTF 82
IYE ++L F
Sbjct: 91 IYEDAVELQQF 101
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain,
TGF-beta, epigenetics, methylation, K9ME3, K14AC,
transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB:
3u5m_A* 3u5o_A* 3u5p_A*
Length = 207
Score = 60.7 bits (146), Expect = 5e-13
Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
Query: 19 PVPDYHRIIGKPMDFGTIKHKLNMF---QYRNNSEVLFDCNLVFDNCFAYNKEDSEIYEP 75
+P+Y++II KPMD T+K KL Y+ + + D L+F NC +N+ +
Sbjct: 109 SIPNYYKIIKKPMDLSTVKKKLQKKHSQHYQIPDDFVADVRLIFKNCERFNEMMKVVQVY 168
Query: 76 TIKLNTFLSC 85
L
Sbjct: 169 ADTQEINLKA 178
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger,
bromodomain, SUMO, acetylation, alternative splicing,
metal-binding, nucleus; NMR {Homo sapiens}
Length = 189
Score = 49.5 bits (117), Expect = 5e-09
Identities = 8/59 (13%), Positives = 18/59 (30%), Gaps = 3/59 (5%)
Query: 17 VEPVPDYHRIIGKPMDFGTIKHKLNM---FQYRNNSEVLFDCNLVFDNCFAYNKEDSEI 72
G +D I+ +L Y + E D +F ++ +++
Sbjct: 101 ATDSTFSLDQPGGTLDLTLIRARLQEKLSPPYSSPQEFAQDVGRMFKQFNKLTEDKADV 159
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain,
leukemia, apoptosis, chromati regulator, DNA-binding,
isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A*
3lqj_A* 2kyu_A
Length = 183
Score = 43.4 bits (101), Expect = 9e-07
Identities = 10/62 (16%), Positives = 21/62 (33%)
Query: 21 PDYHRIIGKPMDFGTIKHKLNMFQYRNNSEVLFDCNLVFDNCFAYNKEDSEIYEPTIKLN 80
+P+D +K K++ Y + E D + + EI + +
Sbjct: 95 HLLRYRQQQPLDLEGVKRKMDQGNYTSVLEFSDDIVKIIQAAINSDGGQPEIKKANSMVK 154
Query: 81 TF 82
+F
Sbjct: 155 SF 156
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 31.7 bits (71), Expect = 0.022
Identities = 14/58 (24%), Positives = 23/58 (39%), Gaps = 11/58 (18%)
Query: 21 PDYHRIIGKPMDFGTIKHKLNMFQYRNNSEVLFDCNLVFDNCFAYNKEDSEIYEPTIK 78
P Y R++ +DF K + N+ + +L+ A ED I+E K
Sbjct: 539 PKYERLVNAILDF-LPKIEENLICSK-------YTDLLR---IALMAEDEAIFEEAHK 585
>3ied_A Heat shock protein; HSP90, chaperone, structural genomics,
structura genomics consortium, SGC, stress response;
HET: AN2; 2.01A {Plasmodium falciparum}
Length = 272
Score = 24.5 bits (53), Expect = 6.6
Identities = 6/28 (21%), Positives = 10/28 (35%)
Query: 8 ETASSATFSVEPVPDYHRIIGKPMDFGT 35
+ +FSV + Y + GT
Sbjct: 206 SSDLKGSFSVNEIKKYDQEYDDIKGSGT 233
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.137 0.430
Gapped
Lambda K H
0.267 0.0672 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,298,562
Number of extensions: 60872
Number of successful extensions: 191
Number of sequences better than 10.0: 1
Number of HSP's gapped: 184
Number of HSP's successfully gapped: 45
Length of query: 91
Length of database: 6,701,793
Length adjustment: 58
Effective length of query: 33
Effective length of database: 5,082,375
Effective search space: 167718375
Effective search space used: 167718375
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (23.5 bits)