RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy7968
         (91 letters)



>d3dwya1 a.29.2.1 (A:1084-1197) CREB-binding protein, CBP {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 114

 Score = 68.1 bits (166), Expect = 3e-17
 Identities = 24/64 (37%), Positives = 37/64 (57%)

Query: 20  VPDYHRIIGKPMDFGTIKHKLNMFQYRNNSEVLFDCNLVFDNCFAYNKEDSEIYEPTIKL 79
           +PDY  I+  PMD  TIK KL+  QY+   + + D  L+F+N + YN++ S +Y+   KL
Sbjct: 39  IPDYFDIVKNPMDLSTIKRKLDTGQYQEPWQYVDDVWLMFNNAWLYNRKTSRVYKFCSKL 98

Query: 80  NTFL 83
               
Sbjct: 99  AEVF 102


>d1eqfa2 a.29.2.1 (A:1498-1625) TAFII250 double bromodomain module
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 128

 Score = 68.1 bits (166), Expect = 5e-17
 Identities = 19/67 (28%), Positives = 36/67 (53%)

Query: 16  SVEPVPDYHRIIGKPMDFGTIKHKLNMFQYRNNSEVLFDCNLVFDNCFAYNKEDSEIYEP 75
           + + VPDY+++I  PMD  TI+  ++  +Y++    L D NL+  N   YN  +S+  + 
Sbjct: 36  NKKFVPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKYNGPESQYTKT 95

Query: 76  TIKLNTF 82
             ++   
Sbjct: 96  AQEIVNV 102


>d1eqfa1 a.29.2.1 (A:1359-1497) TAFII250 double bromodomain module
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 139

 Score = 66.9 bits (163), Expect = 2e-16
 Identities = 15/67 (22%), Positives = 29/67 (43%)

Query: 16  SVEPVPDYHRIIGKPMDFGTIKHKLNMFQYRNNSEVLFDCNLVFDNCFAYNKEDSEIYEP 75
           + + V DY++II +PMD  T++  +    Y +  E      L+  N   YN     + + 
Sbjct: 52  NAKVVKDYYKIITRPMDLQTLRENVRKRLYPSREEFREHLELIVKNSATYNGPKHSLTQI 111

Query: 76  TIKLNTF 82
           +  +   
Sbjct: 112 SQSMLDL 118


>d1wuma1 a.29.2.1 (A:715-832) P300/CAF histone acetyltransferase
           bromodomain {Human (Homo sapiens) [TaxId: 9606]}
          Length = 118

 Score = 65.4 bits (159), Expect = 4e-16
 Identities = 21/69 (30%), Positives = 29/69 (42%)

Query: 15  FSVEPVPDYHRIIGKPMDFGTIKHKLNMFQYRNNSEVLFDCNLVFDNCFAYNKEDSEIYE 74
                 P Y+ +I  PMD  T+  +L    Y +    + D   VF NC  YN  +SE Y+
Sbjct: 38  VKRTEAPGYYEVIRFPMDLKTMSERLKNRYYVSKKLFMADLQRVFTNCKEYNPPESEYYK 97

Query: 75  PTIKLNTFL 83
               L  F 
Sbjct: 98  CANILEKFF 106


>d3d7ca1 a.29.2.1 (A:731-832) GCN5 {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 102

 Score = 63.9 bits (155), Expect = 1e-15
 Identities = 20/68 (29%), Positives = 26/68 (38%)

Query: 15 FSVEPVPDYHRIIGKPMDFGTIKHKLNMFQYRNNSEVLFDCNLVFDNCFAYNKEDSEIYE 74
                PDY+ +I  P+D  T+  +L    Y      + D   V  NC  YN  DSE   
Sbjct: 27 VKKSEAPDYYEVIRFPIDLKTMTERLRSRYYVTRKLFVADLQRVIANCREYNPPDSEYCR 86

Query: 75 PTIKLNTF 82
              L  F
Sbjct: 87 CASALEKF 94


>d1e6ia_ a.29.2.1 (A:) GCN5 {Baker's yeast (Saccharomyces
          cerevisiae) [TaxId: 4932]}
          Length = 111

 Score = 63.8 bits (155), Expect = 2e-15
 Identities = 25/67 (37%), Positives = 40/67 (59%)

Query: 16 SVEPVPDYHRIIGKPMDFGTIKHKLNMFQYRNNSEVLFDCNLVFDNCFAYNKEDSEIYEP 75
          + E VPDY+  I +PMD  T++ KL   +Y+   + ++D  LVF+NC  YN E++  Y+ 
Sbjct: 29 NKEEVPDYYDFIKEPMDLSTMEIKLESNKYQKMEDFIYDARLVFNNCRMYNGENTSYYKY 88

Query: 76 TIKLNTF 82
            +L  F
Sbjct: 89 ANRLEKF 95


>d1d5ta1 c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide
           dissociation inhibitor, GDI {Cow (Bos taurus) [TaxId:
           9913]}
          Length = 336

 Score = 23.3 bits (48), Expect = 6.3
 Identities = 6/20 (30%), Positives = 9/20 (45%), Gaps = 1/20 (5%)

Query: 15  FSVEPVPD-YHRIIGKPMDF 33
            +   + D Y R+ G   DF
Sbjct: 317 TTCNDIKDIYKRMAGSAFDF 336


>d1b35b_ b.121.4.1 (B:) Insect picorna-like virus coat proteins
           {Cricket paralysis virus [TaxId: 12136]}
          Length = 255

 Score = 22.7 bits (48), Expect = 9.0
 Identities = 6/27 (22%), Positives = 8/27 (29%), Gaps = 1/27 (3%)

Query: 31  MDFGTIKHKLNMFQY-RNNSEVLFDCN 56
           +     + KL  F   R    V    N
Sbjct: 92  ISNAMYQDKLKGFVGLRATLVVKVQVN 118


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.137    0.430 

Gapped
Lambda     K      H
   0.267   0.0578    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 328,928
Number of extensions: 12599
Number of successful extensions: 31
Number of sequences better than 10.0: 1
Number of HSP's gapped: 31
Number of HSP's successfully gapped: 9
Length of query: 91
Length of database: 2,407,596
Length adjustment: 55
Effective length of query: 36
Effective length of database: 1,652,446
Effective search space: 59488056
Effective search space used: 59488056
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 47 (22.2 bits)