BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7969
(502 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2R3A|A Chain A, Methyltransferase Domain Of Human Suppressor Of
Variegation 3-9 Homolog 2
Length = 300
Score = 206 bits (525), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 119/300 (39%), Positives = 165/300 (55%), Gaps = 33/300 (11%)
Query: 215 KRLIQMENLKRYEMEINVTTGNAVAPIYVINNVDLSCVPANFTHTNHNIPAEGVIVNEEP 274
K+ Q L+R++ E+N N I+V N VDL P++F + N PA G+ + E
Sbjct: 19 KKAKQRIALQRWQDELN-RRKNHKGMIFVENTVDLEGPPSDFYYINEYKPAPGISLVNEA 77
Query: 275 IIWCECVDNCRDSSYCCGQLNDSVTAYDENKRLRIGQGTPIYECNKNCKCNASCPNRVIQ 334
C C D CC + AY++N++++I GTPIYECN C+C CPNR++Q
Sbjct: 78 TFGCSCTDCFFQK--CCPAEAGVLLAYNKNQQIKIPPGTPIYECNSRCQCGPDCPNRIVQ 135
Query: 335 LGTKIKLGIYKTYNDCGWGVQTLEDIPKGTYVTEYVGEILTYEAASLR----DNQ--TYL 388
GT+ L I++T N GWGV+TL I + ++V EYVGE++T E A R DN+ TYL
Sbjct: 136 KGTQYSLCIFRTSNGRGWGVKTLVKIKRMSFVMEYVGEVITSEEAERRGQFYDNKGITYL 195
Query: 389 FNLDFNGSTSFVIDAYFNGSTSFVIDACNFGNISHFINHSCDPNLAVYAAYIQCLDPNLH 448
F+LD+ S F +DA +GN+SHF+NHSCDPNL V+ +I LD L
Sbjct: 196 FDLDYE-------------SDEFTVDAARYGNVSHFVNHSCDPNLQVFNVFIDNLDTRLP 242
Query: 449 RLPLFAIRDIQKGEQLSFSYYK---------SVTKEPTRPGGSNKVKCKCEAKNCRGYLN 499
R+ LF+ R I GE+L+F Y S+ P + + CKC A CRGYLN
Sbjct: 243 RIALFSTRTINAGEELTFDYQMKGSGDISSDSIDHSPAKK--RVRTVCKCGAVTCRGYLN 300
>pdb|2IGQ|A Chain A, Human Euchromatic Histone Methyltransferase 1
pdb|2IGQ|B Chain B, Human Euchromatic Histone Methyltransferase 1
pdb|2RFI|A Chain A, Crystal Structure Of Catalytic Domain Of Human Euchromatic
Histone Methyltransferase 1 In Complex With Sah And
Dimethylated H3k9 Peptide
pdb|2RFI|B Chain B, Crystal Structure Of Catalytic Domain Of Human Euchromatic
Histone Methyltransferase 1 In Complex With Sah And
Dimethylated H3k9 Peptide
pdb|3MO0|A Chain A, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E11
pdb|3MO0|B Chain B, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E11
pdb|3MO2|A Chain A, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E67
pdb|3MO2|B Chain B, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E67
pdb|3MO2|C Chain C, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E67
pdb|3MO2|D Chain D, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E67
pdb|3MO5|A Chain A, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E72
pdb|3MO5|B Chain B, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E72
pdb|3MO5|C Chain C, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E72
pdb|3MO5|D Chain D, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E72
pdb|3SWC|A Chain A, Glp (G9a-Like Protein) Set Domain In Complex With
Dnmt3ak44me2 Peptide
pdb|3SWC|B Chain B, Glp (G9a-Like Protein) Set Domain In Complex With
Dnmt3ak44me2 Peptide
pdb|3SW9|A Chain A, Glp (G9a-Like Protein) Set Domain In Complex With
Dnmt3ak44me0 Peptide
pdb|3SW9|B Chain B, Glp (G9a-Like Protein) Set Domain In Complex With
Dnmt3ak44me0 Peptide
Length = 285
Score = 159 bits (403), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 92/271 (33%), Positives = 142/271 (52%), Gaps = 25/271 (9%)
Query: 231 NVTTGNAVAPIYVINNVDLSCVPANFTHTNHNIPAEGVIV--NEEPIIWCECVDNCRDSS 288
++ G PI +N VD P+N+ + + N + + N + +C C+D+C S+
Sbjct: 32 DIARGYERIPIPCVNAVDSEPCPSNYKYVSQNCVTSPMNIDRNITHLQYCVCIDDCSSSN 91
Query: 289 YCCGQLNDSVTAYDENKRL----RIGQGTPIYECNKNCKCNASCPNRVIQLGTKIKLGIY 344
CGQL+ YD++ RL + + I+ECN C C +C NRV+Q G + +L +Y
Sbjct: 92 CMCGQLSMRCW-YDKDGRLLPEFNMAEPPLIFECNHACSCWRNCRNRVVQNGLRARLQLY 150
Query: 345 KTYNDCGWGVQTLEDIPKGTYVTEYVGEILTYEAASLRDNQTYLFNLDFNGSTSFVIDAY 404
+T D GWGV++L+DIP GT+V EYVGE+++ A +R+ +YLF+LD + IDA
Sbjct: 151 RT-RDMGWGVRSLQDIPPGTFVCEYVGELISDSEADVREEDSYLFDLDNKDGEVYCIDAR 209
Query: 405 FNGSTSFVIDACNFGNISHFINHSCDPNLAVYAAYIQCLDPNLHRLPLFAIRDIQKGEQL 464
F +GN+S FINH C+PNL ++ D R+ F+ R I+ GEQL
Sbjct: 210 F------------YGNVSRFINHHCEPNLVPVRVFMAHQDLRFPRIAFFSTRLIEAGEQL 257
Query: 465 SFSYYKSVTKEPTRPGGSNKVKCKCEAKNCR 495
F Y + + C+C + CR
Sbjct: 258 GFDYGERFWDIKGK-----LFSCRCGSPKCR 283
>pdb|3HNA|A Chain A, Crystal Structure Of Catalytic Domain Of Human Euchromatic
Histone Methyltransferase 1 In Complex With Sah And
Mono- Methylated H3k9 Peptide
pdb|3HNA|B Chain B, Crystal Structure Of Catalytic Domain Of Human Euchromatic
Histone Methyltransferase 1 In Complex With Sah And
Mono- Methylated H3k9 Peptide
Length = 287
Score = 159 bits (402), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 92/271 (33%), Positives = 142/271 (52%), Gaps = 25/271 (9%)
Query: 231 NVTTGNAVAPIYVINNVDLSCVPANFTHTNHNIPAEGVIV--NEEPIIWCECVDNCRDSS 288
++ G PI +N VD P+N+ + + N + + N + +C C+D+C S+
Sbjct: 34 DIARGYERIPIPCVNAVDSEPCPSNYKYVSQNCVTSPMNIDRNITHLQYCVCIDDCSSSN 93
Query: 289 YCCGQLNDSVTAYDENKRL----RIGQGTPIYECNKNCKCNASCPNRVIQLGTKIKLGIY 344
CGQL+ YD++ RL + + I+ECN C C +C NRV+Q G + +L +Y
Sbjct: 94 CMCGQLSMRCW-YDKDGRLLPEFNMAEPPLIFECNHACSCWRNCRNRVVQNGLRARLQLY 152
Query: 345 KTYNDCGWGVQTLEDIPKGTYVTEYVGEILTYEAASLRDNQTYLFNLDFNGSTSFVIDAY 404
+T D GWGV++L+DIP GT+V EYVGE+++ A +R+ +YLF+LD + IDA
Sbjct: 153 RT-RDMGWGVRSLQDIPPGTFVCEYVGELISDSEADVREEDSYLFDLDNKDGEVYCIDAR 211
Query: 405 FNGSTSFVIDACNFGNISHFINHSCDPNLAVYAAYIQCLDPNLHRLPLFAIRDIQKGEQL 464
F +GN+S FINH C+PNL ++ D R+ F+ R I+ GEQL
Sbjct: 212 F------------YGNVSRFINHHCEPNLVPVRVFMAHQDLRFPRIAFFSTRLIEAGEQL 259
Query: 465 SFSYYKSVTKEPTRPGGSNKVKCKCEAKNCR 495
F Y + + C+C + CR
Sbjct: 260 GFDYGERFWDIKGK-----LFSCRCGSPKCR 285
>pdb|1MVH|A Chain A, Structure Of The Set Domain Histone Lysine
Methyltransferase Clr4
pdb|1MVX|A Chain A, Structure Of The Set Domain Histone Lysine
Methyltransferase Clr4
Length = 299
Score = 158 bits (400), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 87/234 (37%), Positives = 129/234 (55%), Gaps = 34/234 (14%)
Query: 278 CECVDNCRDSSYCCGQLNDSVTAYDENKRLRIGQGTPIYECNKNCKCNASCPNRVIQLGT 337
CEC+D+ + ++ AYD R+R G IYECN C C+ CPNRV+Q G
Sbjct: 85 CECLDDLDEPTH---------FAYDAQGRVRADTGAVIYECNSFCSCSMECPNRVVQRGR 135
Query: 338 KIKLGIYKTYNDCGWGVQTLEDIPKGTYVTEYVGEILTYEAASLRDNQ------TYLFNL 391
+ L I+KT + GWGV++L P GT++T Y+GE++T A+ RD TYLF+L
Sbjct: 136 TLPLEIFKT-KEKGWGVRSLRFAPAGTFITCYLGEVITSAEAAKRDKNYDDDGITYLFDL 194
Query: 392 DFNGSTSFVIDAYFNGSTSFVIDACNFGNISHFINHSCDPNLAVYAAYIQCLDPNLHRLP 451
D F+ ++ + +DA N+G++S F NHSC PN+A+Y+A ++ L
Sbjct: 195 DM-----------FDDASEYTVDAQNYGDVSRFFNHSCSPNIAIYSAVRNHGFRTIYDLA 243
Query: 452 LFAIRDIQKGEQLSFSYYKSVTKEPTRPGGSN-------KVKCKCEAKNCRGYL 498
FAI+DIQ E+L+F Y + P + S + +CKC + NCRG+L
Sbjct: 244 FFAIKDIQPLEELTFDYAGAKDFSPVQSQKSQQNRISKLRRQCKCGSANCRGWL 297
>pdb|3FPD|A Chain A, G9a-Like Protein Lysine Methyltransferase Inhibition By
Bix- 01294
pdb|3FPD|B Chain B, G9a-Like Protein Lysine Methyltransferase Inhibition By
Bix- 01294
Length = 261
Score = 158 bits (399), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 92/271 (33%), Positives = 142/271 (52%), Gaps = 25/271 (9%)
Query: 231 NVTTGNAVAPIYVINNVDLSCVPANFTHTNHNIPAEGVIV--NEEPIIWCECVDNCRDSS 288
++ G PI +N VD P+N+ + + N + + N + +C C+D+C S+
Sbjct: 8 DIARGYERIPIPCVNAVDSEPCPSNYKYVSQNCVTSPMNIDRNITHLQYCVCIDDCSSSN 67
Query: 289 YCCGQLNDSVTAYDENKRL----RIGQGTPIYECNKNCKCNASCPNRVIQLGTKIKLGIY 344
CGQL+ YD++ RL + + I+ECN C C +C NRV+Q G + +L +Y
Sbjct: 68 CMCGQLS-MRCWYDKDGRLLPEFNMAEPPLIFECNHACSCWRNCRNRVVQNGLRARLQLY 126
Query: 345 KTYNDCGWGVQTLEDIPKGTYVTEYVGEILTYEAASLRDNQTYLFNLDFNGSTSFVIDAY 404
+T D GWGV++L+DIP GT+V EYVGE+++ A +R+ +YLF+LD + IDA
Sbjct: 127 RT-RDMGWGVRSLQDIPPGTFVCEYVGELISDSEADVREEDSYLFDLDNKDGEVYCIDAR 185
Query: 405 FNGSTSFVIDACNFGNISHFINHSCDPNLAVYAAYIQCLDPNLHRLPLFAIRDIQKGEQL 464
F +GN+S FINH C+PNL ++ D R+ F+ R I+ GEQL
Sbjct: 186 F------------YGNVSRFINHHCEPNLVPVRVFMAHQDLRFPRIAFFSTRLIEAGEQL 233
Query: 465 SFSYYKSVTKEPTRPGGSNKVKCKCEAKNCR 495
F Y + + C+C + CR
Sbjct: 234 GFDYGERFWDIKGK-----LFSCRCGSPKCR 259
>pdb|4I51|A Chain A, Methyltransferase Domain Of Human Euchromatic Histone
Methyltransferase 1, Mutant Y1211a
pdb|4I51|B Chain B, Methyltransferase Domain Of Human Euchromatic Histone
Methyltransferase 1, Mutant Y1211a
Length = 286
Score = 156 bits (395), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 92/271 (33%), Positives = 140/271 (51%), Gaps = 25/271 (9%)
Query: 231 NVTTGNAVAPIYVINNVDLSCVPANFTHTNHNIPAEGVIV--NEEPIIWCECVDNCRDSS 288
++ G PI +N VD P+N+ + + N + + N + +C C+D+C S+
Sbjct: 33 DIARGYERIPIPCVNAVDSEPCPSNYKYVSQNCVTSPMNIDRNITHLQYCVCIDDCSSSN 92
Query: 289 YCCGQLNDSVTAYDENKRL----RIGQGTPIYECNKNCKCNASCPNRVIQLGTKIKLGIY 344
CGQL+ YD++ RL + + I+ECN C C +C NRV+Q G + +L +Y
Sbjct: 93 CMCGQLSMRCW-YDKDGRLLPEFNMAEPPLIFECNHACSCWRNCRNRVVQNGLRARLQLY 151
Query: 345 KTYNDCGWGVQTLEDIPKGTYVTEYVGEILTYEAASLRDNQTYLFNLDFNGSTSFVIDAY 404
+T D GWGV++L+DIP GT+V EYVGE+++ A +R+ +YLF+LD + IDA
Sbjct: 152 RT-RDMGWGVRSLQDIPPGTFVCEYVGELISDSEADVREEDSYLFDLDNKDGEVYCIDAR 210
Query: 405 FNGSTSFVIDACNFGNISHFINHSCDPNLAVYAAYIQCLDPNLHRLPLFAIRDIQKGEQL 464
F +GN+S FINH C+PNL ++ D R+ F+ R I+ GEQL
Sbjct: 211 F------------YGNVSRFINHHCEPNLVPVRVFMAHQDLRFPRIAFFSTRLIEAGEQL 258
Query: 465 SFSYYKSVTKEPTRPGGSNKVKCKCEAKNCR 495
F E C+C + CR
Sbjct: 259 GFD-----AGERFWDIKGKLFSCRCGSPKCR 284
>pdb|3K5K|A Chain A, Discovery Of A 2,4-Diamino-7-Aminoalkoxy-Quinazoline As A
Potent Inhibitor Of Histone Lysine Methyltransferase,
G9a
pdb|3K5K|B Chain B, Discovery Of A 2,4-Diamino-7-Aminoalkoxy-Quinazoline As A
Potent Inhibitor Of Histone Lysine Methyltransferase,
G9a
pdb|3RJW|A Chain A, Crystal Structure Of Histone Lysine Methyltransferase G9a
With An Inhibitor
pdb|3RJW|B Chain B, Crystal Structure Of Histone Lysine Methyltransferase G9a
With An Inhibitor
Length = 283
Score = 154 bits (388), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 96/271 (35%), Positives = 144/271 (53%), Gaps = 24/271 (8%)
Query: 231 NVTTGNAVAPIYVINNVDLSCVPANFTHTNHNIPAEGVIV--NEEPIIWCECVDNCRDSS 288
+V G PI +N VD P ++ + + N + + N + C CVD+C S+
Sbjct: 15 DVARGYENVPIPCVNGVDGEPCPEDYKYISENCETSTMNIDRNITHLQHCTCVDDCSSSN 74
Query: 289 YCCGQLNDSVTAYDENKRL--RIGQGTP--IYECNKNCKCNASCPNRVIQLGTKIKLGIY 344
CGQL+ YD++ RL + P I+ECN+ C C +C NRV+Q G K++L +Y
Sbjct: 75 CLCGQLSIRCW-YDKDGRLLQEFNKIEPPLIFECNQACSCWRNCKNRVVQSGIKVRLQLY 133
Query: 345 KTYNDCGWGVQTLEDIPKGTYVTEYVGEILTYEAASLRDNQTYLFNLDFNGSTSFVIDAY 404
+T GWGV+ L+ IP+GT++ EYVGE+++ A +R++ +YLF+LD + IDA
Sbjct: 134 RTAK-MGWGVRALQTIPQGTFICEYVGELISDAEADVREDDSYLFDLDNKDGEVYCIDAR 192
Query: 405 FNGSTSFVIDACNFGNISHFINHSCDPNLAVYAAYIQCLDPNLHRLPLFAIRDIQKGEQL 464
+ +GNIS FINH CDPN+ ++ D R+ F+ RDI+ GE+L
Sbjct: 193 Y------------YGNISRFINHLCDPNIIPVRVFMLHQDLRFPRIAFFSSRDIRTGEEL 240
Query: 465 SFSY----YKSVTKEPTRPGGSNKVKCKCEA 491
F Y + +K T GS K K EA
Sbjct: 241 GFDYGDRFWDIKSKYFTCQCGSEKCKHSAEA 271
>pdb|2O8J|A Chain A, Human Euchromatic Histone Methyltransferase 2
pdb|2O8J|B Chain B, Human Euchromatic Histone Methyltransferase 2
pdb|2O8J|C Chain C, Human Euchromatic Histone Methyltransferase 2
pdb|2O8J|D Chain D, Human Euchromatic Histone Methyltransferase 2
Length = 281
Score = 154 bits (388), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 96/271 (35%), Positives = 144/271 (53%), Gaps = 24/271 (8%)
Query: 231 NVTTGNAVAPIYVINNVDLSCVPANFTHTNHNIPAEGVIV--NEEPIIWCECVDNCRDSS 288
+V G PI +N VD P ++ + + N + + N + C CVD+C S+
Sbjct: 13 DVARGYENVPIPCVNGVDGEPCPEDYKYISENCETSTMNIDRNITHLQHCTCVDDCSSSN 72
Query: 289 YCCGQLNDSVTAYDENKRL--RIGQGTP--IYECNKNCKCNASCPNRVIQLGTKIKLGIY 344
CGQL+ YD++ RL + P I+ECN+ C C +C NRV+Q G K++L +Y
Sbjct: 73 CLCGQLSIRCW-YDKDGRLLQEFNKIEPPLIFECNQACSCWRNCKNRVVQSGIKVRLQLY 131
Query: 345 KTYNDCGWGVQTLEDIPKGTYVTEYVGEILTYEAASLRDNQTYLFNLDFNGSTSFVIDAY 404
+T GWGV+ L+ IP+GT++ EYVGE+++ A +R++ +YLF+LD + IDA
Sbjct: 132 RTAK-MGWGVRALQTIPQGTFICEYVGELISDAEADVREDDSYLFDLDNKDGEVYCIDAR 190
Query: 405 FNGSTSFVIDACNFGNISHFINHSCDPNLAVYAAYIQCLDPNLHRLPLFAIRDIQKGEQL 464
+ +GNIS FINH CDPN+ ++ D R+ F+ RDI+ GE+L
Sbjct: 191 Y------------YGNISRFINHLCDPNIIPVRVFMLHQDLRFPRIAFFSSRDIRTGEEL 238
Query: 465 SFSY----YKSVTKEPTRPGGSNKVKCKCEA 491
F Y + +K T GS K K EA
Sbjct: 239 GFDYGDRFWDIKSKYFTCQCGSEKCKHSAEA 269
>pdb|1ML9|A Chain A, Structure Of The Neurospora Set Domain Protein Dim-5, A
Histone Lysine Methyltransferase
pdb|1PEG|A Chain A, Structural Basis For The Product Specificity Of Histone
Lysine Methyltransferases
pdb|1PEG|B Chain B, Structural Basis For The Product Specificity Of Histone
Lysine Methyltransferases
Length = 302
Score = 143 bits (360), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 97/299 (32%), Positives = 144/299 (48%), Gaps = 40/299 (13%)
Query: 236 NAVAPIYVINNVDLSCVPANFTHTNHNIPAEGVIVNEEPI-IWCECVDNCRDSSYCCGQL 294
+A PI ++N D + + NF +H+I + V V ++ + C C + C L
Sbjct: 7 HAQLPISIVNREDDAFLNPNFRFIDHSIIGKNVPVADQSFRVGCSCASDEECMYSTCQCL 66
Query: 295 NDSVTAYDENK---------------------RLRIGQGT-PIYECNKNCKCNASCPNRV 332
++ DE R R+ Q PIYEC++ C C+ CPNRV
Sbjct: 67 DEMAPDSDEEADPYTRKKRFAYYSQGAKKGLLRDRVLQSQEPIYECHQGCACSKDCPNRV 126
Query: 333 IQLGTKIKLGIYKTYNDCGWGVQTLEDIPKGTYVTEYVGEILTYEAASLRDNQT------ 386
++ G + L I++T D GWGV+ +I +G +V Y+GEI+T E A R ++
Sbjct: 127 VERGRTVPLQIFRT-KDRGWGVKCPVNIKRGQFVDRYLGEIITSEEADRRRAESTIARRK 185
Query: 387 --YLFNLD-FNGSTSFVIDAYFNGSTSFVIDACNFGNISHFINHSCDPNLAVYAAYIQCL 443
YLF LD F+ S +D G +D + FINHSCDPN+A++A
Sbjct: 186 DVYLFALDKFSDPDS--LDPLLAGQ-PLEVDGEYMSGPTRFINHSCDPNMAIFARVGDHA 242
Query: 444 DPNLHRLPLFAIRDIQKGEQLSFSYYKSVTKEPTRPGGSNKV----KCKCEAKNCRGYL 498
D ++H L LFAI+DI KG +L+F Y +T + +K+ KC C CRGYL
Sbjct: 243 DKHIHDLALFAIKDIPKGTELTFDYVNGLTGLESDAHDPSKISEMTKCLCGTAKCRGYL 301
>pdb|3BO5|A Chain A, Crystal Structure Of Methyltransferase Domain Of Human
Histone-Lysine N-Methyltransferase Setmar
Length = 290
Score = 122 bits (306), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 85/261 (32%), Positives = 133/261 (50%), Gaps = 31/261 (11%)
Query: 256 FTHTNHNIPAEGVIVNEEPIIW--CECVDN-CRDSSYCCGQLNDSVTAYDENKRLR-IGQ 311
F +T ++ G ++ I + C CV C + C + ++ YD+N LR IG
Sbjct: 38 FQYTPDHVVGPGADIDPTQITFPGCICVKTPCLPGTCSCLRHGEN---YDDNSCLRDIGS 94
Query: 312 GT----PIYECNKNCKCNASCPNRVIQLGTKIKLGIYKTYNDCGWGVQTLEDIPKGTYVT 367
G P++ECN C+C+ C NRV+Q G + ++KT+ GWG++TLE IPKG +V
Sbjct: 95 GGKYAEPVFECNVLCRCSDHCRNRVVQKGLQFHFQVFKTHKK-GWGLRTLEFIPKGRFVC 153
Query: 368 EYVGEILTYEAASLRDNQTYLFNLDFNGSTSFVI---DAYFNGST-SFVIDACNFGNISH 423
EY GE+L + R +L ++++I + +NG +D GNI
Sbjct: 154 EYAGEVLGFSEVQRR------IHLQTKSDSNYIIAIREHVYNGQVMETFVDPTYIGNIGR 207
Query: 424 FINHSCDPNLAVYAAYIQCLDPNLHRLPLFAIRDIQKGEQLSFSY---YKSVTKEPTRP- 479
F+NHSC+PNL + I + P +L LFA +DI E+LS+ Y Y ++T ++
Sbjct: 208 FLNHSCEPNLLMIPVRIDSMVP---KLALFAAKDIVPEEELSYDYSGRYLNLTVSASKER 264
Query: 480 --GGSNKVKCKCEAKNCRGYL 498
G + C C AK+C +L
Sbjct: 265 LDHGKLRKPCYCGAKSCTAFL 285
>pdb|3OOI|A Chain A, Crystal Structure Of Human Histone-Lysine
N-Methyltransferase Nsd1 Set Domain In Complex With
S-Adenosyl-L-Methionine
Length = 232
Score = 82.8 bits (203), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 58/185 (31%), Positives = 83/185 (44%), Gaps = 21/185 (11%)
Query: 315 IYECNKN-CKCNASCPNRVIQLGTKIKLGIYKTYNDCGWGVQTLEDIPKGTYVTEYVGEI 373
+YEC+ C C N+ ++ I++T GWG++T DI KG +V EYVGE+
Sbjct: 67 LYECHPTVCPAGGRCQNQCFSKRQYPEVEIFRTLQR-GWGLRTKTDIKKGEFVNEYVGEL 125
Query: 374 LTYEAASLRDNQTYLFNLDFNGSTSFVIDAYFNGSTSFVIDACNFGNISHFINHSCDPNL 433
+ E R Y D +D +IDA GN + F+NH C PN
Sbjct: 126 IDEEECRARIR--YAQEHDITNFYMLTLDK------DRIIDAGPKGNYARFMNHCCQPNC 177
Query: 434 AVYAAYIQCLDPNLHRLPLFAIRDIQKGEQLSFSYYKSVTKEPTRPGGSNKVKCKCEAKN 493
+ R+ LFA+ DI+ G +L+F+Y G+ K CKC A N
Sbjct: 178 ETQKWSVN----GDTRVGLFALSDIKAGTELTFNYNLECL-------GNGKTVCKCGAPN 226
Query: 494 CRGYL 498
C G+L
Sbjct: 227 CSGFL 231
>pdb|4FMU|A Chain A, Crystal Structure Of Methyltransferase Domain Of Human Set
Domain- Containing Protein 2 Compound: Pr-Snf
pdb|4H12|A Chain A, The Crystal Structure Of Methyltransferase Domain Of Human
Set Domain- Containing Protein 2 In Complex With
S-Adenosyl-L-Homocysteine
Length = 278
Score = 78.6 bits (192), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 57/189 (30%), Positives = 83/189 (43%), Gaps = 24/189 (12%)
Query: 315 IYECNKNCKCNASCPNRVIQLGTKIKLGIYKTYNDCGWGVQTLEDIPKGTYVTEYVGEIL 374
+ EC+ C C NR Q + + T GWG++ +D+P T+V EY GE+L
Sbjct: 93 MIECSSRCPNGDYCSNRRFQRKQHADVEVILTEKK-GWGLRAAKDLPSNTFVLEYCGEVL 151
Query: 375 TYEAASLRDNQTYLFNLDFNGSTSFVIDAYFNG-STSFVIDACNFGNISHFINHSCDPNL 433
++ R + Y N + I YF +IDA GN S F+NHSC+PN
Sbjct: 152 DHKEFKARVKE-YARNKN--------IHYYFMALKNDEIIDATQKGNCSRFMNHSCEPNC 202
Query: 434 AVYAAYIQCLDPNLHRLPLFAIRDIQKGEQLSFSY-YKSVTKEPTRPGGSNKVKCKCEAK 492
+ R+ F + + G +L+F Y ++ KE KC C +
Sbjct: 203 ETQKWTVN----GQLRVGFFTTKLVPSGSELTFDYQFQRYGKEAQ--------KCFCGSA 250
Query: 493 NCRGYLNVE 501
NCRGYL E
Sbjct: 251 NCRGYLGGE 259
>pdb|3OPE|A Chain A, Structural Basis Of Auto-Inhibitory Mechanism Of Histone
Methyltransferase
pdb|3OPE|B Chain B, Structural Basis Of Auto-Inhibitory Mechanism Of Histone
Methyltransferase
Length = 222
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/184 (28%), Positives = 90/184 (48%), Gaps = 22/184 (11%)
Query: 317 ECNKN-CKCNASCPNRVIQLGTKIKLGIYKTYNDCGWGVQTLEDIPKGTYVTEYVGEILT 375
EC+ N C C C N+ IQ ++ + GWG++T E + G ++ EY+GE+++
Sbjct: 50 ECSPNTCPCGEQCCNQRIQRHEWVQCLERFRAEEKGWGIRTKEPLKAGQFIIEYLGEVVS 109
Query: 376 YEAASLRDNQTYLFNLDFNGSTSFVIDAYFNGSTSFVIDACNFGNISHFINHSCDPNLAV 435
+ R + Y N S + + N + VID+ GN + FINHSCDPN +
Sbjct: 110 EQEFRNRMIEQY-----HNHSDHYCL----NLDSGMVIDSYRMGNEARFINHSCDPNCEM 160
Query: 436 YAAYIQCLDPNLHRLPLFAIRDIQKGEQLSFSY-YKSVTKEPTRPGGSNKVKCKCEAKNC 494
+ ++R+ L+A++D+ G +L++ Y + S E + CKC + C
Sbjct: 161 QKWSVN----GVYRIGLYALKDMPAGTELTYDYNFHSFNVEKQQL-------CKCGFEKC 209
Query: 495 RGYL 498
RG +
Sbjct: 210 RGII 213
>pdb|2W5Y|A Chain A, Binary Complex Of The Mixed Lineage Leukaemia (Mll1) Set
Domain With The Cofactor Product S-Adenosylhomocysteine.
pdb|2W5Z|A Chain A, Ternary Complex Of The Mixed Lineage Leukaemia (Mll1) Set
Domain With The Cofactor Product S-Adenosylhomocysteine
And Histone Peptide
Length = 192
Score = 71.6 bits (174), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 56/169 (33%), Positives = 85/169 (50%), Gaps = 20/169 (11%)
Query: 331 RVIQLGTKIKLGIYKTYNDCGWGVQTLEDIPKGTYVTEYVGEILTYEAASLRDNQTYLFN 390
R ++ +K +G+Y++ G G+ +I G V EY G ++ + D + ++
Sbjct: 44 RHLKKTSKEAVGVYRSPIH-GRGLFCKRNIDAGEMVIEYAGNVIR---SIQTDKREKYYD 99
Query: 391 LDFNGSTSFVIDAYFNGSTSFVIDACNFGNISHFINHSCDPNLAVYAAYIQCLDPNLHRL 450
G F ID S V+DA GN + FINHSC+PN Y+ I +D H +
Sbjct: 100 SKGIGCYMFRID------DSEVVDATMHGNAARFINHSCEPN--CYSRVIN-IDGQKH-I 149
Query: 451 PLFAIRDIQKGEQLSFSYYKSVTKEPTRPGGSNKVKCKCEAKNCRGYLN 499
+FA+R I +GE+L++ Y K P SNK+ C C AK CR +LN
Sbjct: 150 VIFAMRKIYRGEELTYDY-----KFPIE-DASNKLPCNCGAKKCRKFLN 192
>pdb|3OXF|A Chain A, Human Lysine Methyltransferase Smyd3 In Complex With
Adohcy (Form I)
pdb|3OXF|B Chain B, Human Lysine Methyltransferase Smyd3 In Complex With
Adohcy (Form I)
Length = 436
Score = 35.8 bits (81), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 9/73 (12%)
Query: 424 FINHSCDPNLAVYAAYIQCLDPNLHRLPLFAIRDIQKGEQLSFSYYKSV-TKEPTRPGGS 482
+NHSCDPN ++ N L L A+RDI+ GE+L+ Y + T E R
Sbjct: 203 LLNHSCDPNCSIVF--------NGPHLLLRAVRDIEVGEELTICYLDMLMTSEERRKQLR 254
Query: 483 NKVKCKCEAKNCR 495
++ +C+ C+
Sbjct: 255 DQYCFECDCFRCQ 267
>pdb|3PDN|A Chain A, Crystal Structure Of Smyd3 In Complex With
Methyltransferase Inhibitor Sinefungin
pdb|3OXL|A Chain A, Human Lysine Methyltransferase Smyd3 In Complex With
Adohcy (Form Ii)
Length = 428
Score = 35.8 bits (81), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 9/73 (12%)
Query: 424 FINHSCDPNLAVYAAYIQCLDPNLHRLPLFAIRDIQKGEQLSFSYYKSV-TKEPTRPGGS 482
+NHSCDPN ++ N L L A+RDI+ GE+L+ Y + T E R
Sbjct: 203 LLNHSCDPNCSIVF--------NGPHLLLRAVRDIEVGEELTICYLDMLMTSEERRKQLR 254
Query: 483 NKVKCKCEAKNCR 495
++ +C+ C+
Sbjct: 255 DQYCFECDCFRCQ 267
>pdb|3QWP|A Chain A, Crystal Structure Of Set And Mynd Domain Containing 3;
Zinc Finger Mynd Domain-Containing Protein 1
Length = 429
Score = 35.4 bits (80), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 9/73 (12%)
Query: 424 FINHSCDPNLAVYAAYIQCLDPNLHRLPLFAIRDIQKGEQLSFSYYKSV-TKEPTRPGGS 482
+NHSCDPN ++ N L L A+RDI+ GE+L+ Y + T E R
Sbjct: 204 LLNHSCDPNCSIVF--------NGPHLLLRAVRDIEVGEELTICYLDMLMTSEERRKQLR 255
Query: 483 NKVKCKCEAKNCR 495
++ +C+ C+
Sbjct: 256 DQYCFECDCFRCQ 268
>pdb|3RU0|A Chain A, Cocrystal Structure Of Human Smyd3 With Inhibitor
Sinefungin Bound
pdb|3RU0|B Chain B, Cocrystal Structure Of Human Smyd3 With Inhibitor
Sinefungin Bound
Length = 438
Score = 35.4 bits (80), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 9/73 (12%)
Query: 424 FINHSCDPNLAVYAAYIQCLDPNLHRLPLFAIRDIQKGEQLSFSYYKSV-TKEPTRPGGS 482
+NHSCDPN ++ N L L A+RDI+ GE+L+ Y + T E R
Sbjct: 205 LLNHSCDPNCSIVF--------NGPHLLLRAVRDIEVGEELTICYLDMLMTSEERRKQLR 256
Query: 483 NKVKCKCEAKNCR 495
++ +C+ C+
Sbjct: 257 DQYCFECDCFRCQ 269
>pdb|3MEK|A Chain A, Crystal Structure Of Human Histone-Lysine N-
Methyltransferase Smyd3 In Complex With S-Adenosyl-L-
Methionine
Length = 429
Score = 35.4 bits (80), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 9/73 (12%)
Query: 424 FINHSCDPNLAVYAAYIQCLDPNLHRLPLFAIRDIQKGEQLSFSYYKSV-TKEPTRPGGS 482
+NHSCDPN ++ N L L A+RDI+ GE+L+ Y + T E R
Sbjct: 204 LLNHSCDPNCSIVF--------NGPHLLLRAVRDIEVGEELTICYLDXLXTSEERRKQLR 255
Query: 483 NKVKCKCEAKNCR 495
++ +C+ C+
Sbjct: 256 DQYCFECDCFRCQ 268
>pdb|3OXG|A Chain A, Human Lysine Methyltransferase Smyd3 In Complex With
Adohcy (Form Iii)
Length = 464
Score = 35.4 bits (80), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 9/73 (12%)
Query: 424 FINHSCDPNLAVYAAYIQCLDPNLHRLPLFAIRDIQKGEQLSFSYYKSV-TKEPTRPGGS 482
+NHSCDPN ++ N L L A+RDI+ GE+L+ Y + T E R
Sbjct: 239 LLNHSCDPNCSIVF--------NGPHLLLRAVRDIEVGEELTICYLDMLMTSEERRKQLR 290
Query: 483 NKVKCKCEAKNCR 495
++ +C+ C+
Sbjct: 291 DQYCFECDCFRCQ 303
>pdb|3DAL|A Chain A, Methyltransferase Domain Of Human Pr Domain-Containing
Protein 1
pdb|3DAL|B Chain B, Methyltransferase Domain Of Human Pr Domain-Containing
Protein 1
Length = 196
Score = 33.1 bits (74), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 51/122 (41%), Gaps = 5/122 (4%)
Query: 353 GVQTLEDIPKGTYVTEYVGEILTYEAASLRDNQTYLFNLDFNGSTSFVIDAYFNGSTSFV 412
GV + E IPKGT +GEI T + N+ Y + + G ID FN S
Sbjct: 73 GVMSKEYIPKGTRFGPLIGEIYTNDTVPKNANRKYFWRIYSRGELHHFIDG-FNEEKSNW 131
Query: 413 IDACNFGNISHFIN-HSCDPNLAVYAAYIQCLDPNLHRLPLFAIRDIQKGEQLSFSYYKS 471
+ N + N +C + +Y I+ + N L ++ RD E+L + Y
Sbjct: 132 MRYVNPAHSPREQNLAACQNGMNIYFYTIKPIPAN-QELLVWYCRDF--AERLHYPYPGE 188
Query: 472 VT 473
+T
Sbjct: 189 LT 190
>pdb|3F9W|A Chain A, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y334f H4-Lys20
ADOHCY
pdb|3F9W|B Chain B, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y334f H4-Lys20
ADOHCY
pdb|3F9W|C Chain C, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y334f H4-Lys20
ADOHCY
pdb|3F9W|D Chain D, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y334f H4-Lys20
ADOHCY
pdb|3F9X|A Chain A, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y334f H4-Lys20me2
Adohcy
pdb|3F9X|B Chain B, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y334f H4-Lys20me2
Adohcy
pdb|3F9X|C Chain C, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y334f H4-Lys20me2
Adohcy
pdb|3F9X|D Chain D, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y334f H4-Lys20me2
Adohcy
pdb|3F9Y|A Chain A, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-y334f / H4-lys20me1
/ Adohcy
pdb|3F9Y|B Chain B, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-y334f / H4-lys20me1
/ Adohcy
Length = 166
Score = 32.7 bits (73), Expect = 0.43, Method: Composition-based stats.
Identities = 35/119 (29%), Positives = 51/119 (42%), Gaps = 10/119 (8%)
Query: 351 GWGVQTLEDIPKGTYVTEYVGEILTYEAASLRDNQTYLFNLDFNGSTSFVIDAYFNGSTS 410
G GV + +G +V EY G+++ A R+ L+ D ST + + S +
Sbjct: 41 GRGVIATKQFSRGDFVVEYHGDLIEITDAKKREA---LYAQD--PSTGCYMYYFQYLSKT 95
Query: 411 FVIDACNFGN-ISHFINHSCDPNLAVYAAYIQCLDPNLHRLPLFAIRDIQKGEQLSFSY 468
+ +DA N + INHS N I + L L A RDI GE+L F Y
Sbjct: 96 YCVDATRETNRLGRLINHSKCGNCQTKLHDID----GVPHLILIASRDIAAGEELLFDY 150
>pdb|4IJ8|A Chain A, Crystal Structure Of The Complex Of Setd8 With Sam
pdb|4IJ8|B Chain B, Crystal Structure Of The Complex Of Setd8 With Sam
Length = 165
Score = 32.7 bits (73), Expect = 0.44, Method: Composition-based stats.
Identities = 34/119 (28%), Positives = 51/119 (42%), Gaps = 10/119 (8%)
Query: 351 GWGVQTLEDIPKGTYVTEYVGEILTYEAASLRDNQTYLFNLDFNGSTSFVIDAYFNGSTS 410
G GV + +G +V EY G+++ A R+ L+ D ST + + S +
Sbjct: 40 GRGVIATKQFSRGDFVVEYHGDLIEITDAKKREA---LYAQD--PSTGCYMYYFQYLSKT 94
Query: 411 FVIDACNFGN-ISHFINHSCDPNLAVYAAYIQCLDPNLHRLPLFAIRDIQKGEQLSFSY 468
+ +DA N + INHS N I + L L A RDI GE+L + Y
Sbjct: 95 YCVDATRETNRLGRLINHSKSGNCQTKLHDID----GVPHLILIASRDIAAGEELLYDY 149
>pdb|1ZKK|A Chain A, Crystal Structure Of Hset8 In Ternary Complex With H4
Peptide (16-24) And Adohcy
pdb|1ZKK|B Chain B, Crystal Structure Of Hset8 In Ternary Complex With H4
Peptide (16-24) And Adohcy
pdb|1ZKK|C Chain C, Crystal Structure Of Hset8 In Ternary Complex With H4
Peptide (16-24) And Adohcy
pdb|1ZKK|D Chain D, Crystal Structure Of Hset8 In Ternary Complex With H4
Peptide (16-24) And Adohcy
Length = 167
Score = 31.6 bits (70), Expect = 1.1, Method: Composition-based stats.
Identities = 34/119 (28%), Positives = 51/119 (42%), Gaps = 10/119 (8%)
Query: 351 GWGVQTLEDIPKGTYVTEYVGEILTYEAASLRDNQTYLFNLDFNGSTSFVIDAYFNGSTS 410
G GV + +G +V EY G+++ A R+ L+ D ST + + S +
Sbjct: 42 GRGVIATKQFSRGDFVVEYHGDLIEITDAKKREA---LYAQD--PSTGCYMYYFQYLSKT 96
Query: 411 FVIDACNFGN-ISHFINHSCDPNLAVYAAYIQCLDPNLHRLPLFAIRDIQKGEQLSFSY 468
+ +DA N + INHS N I + L L A RDI GE+L + Y
Sbjct: 97 YCVDATRETNRLGRLINHSKCGNCQTKLHDID----GVPHLILIASRDIAAGEELLYDY 151
>pdb|2BQZ|A Chain A, Crystal Structure Of A Ternary Complex Of The Human
Histone Methyltransferase Pr-Set7 (Also Known As Set8)
pdb|2BQZ|E Chain E, Crystal Structure Of A Ternary Complex Of The Human
Histone Methyltransferase Pr-Set7 (Also Known As Set8)
Length = 161
Score = 31.2 bits (69), Expect = 1.3, Method: Composition-based stats.
Identities = 33/119 (27%), Positives = 49/119 (41%), Gaps = 10/119 (8%)
Query: 351 GWGVQTLEDIPKGTYVTEYVGEILTYEAASLRDNQTYLFNLDFNGSTSFVIDAYFNGSTS 410
G GV + +G +V EY G+++ A R+ L+ D + Y S +
Sbjct: 36 GRGVIATKQFSRGDFVVEYHGDLIEITDAKKREA---LYAQDPSTGCYMYYFQYL--SKT 90
Query: 411 FVIDACNFGN-ISHFINHSCDPNLAVYAAYIQCLDPNLHRLPLFAIRDIQKGEQLSFSY 468
+ +DA N + INHS N I + L L A RDI GE+L + Y
Sbjct: 91 YCVDATRETNRLGRLINHSKCGNCQTKLHDID----GVPHLILIASRDIAAGEELLYDY 145
>pdb|1N3J|A Chain A, Structure And Substrate Of A Histone H3 Lysine
Methyltransferase From Paramecium Bursaria Chlorella
Virus 1
pdb|1N3J|B Chain B, Structure And Substrate Of A Histone H3 Lysine
Methyltransferase From Paramecium Bursaria Chlorella
Virus 1
pdb|2G46|A Chain A, Structure Of Vset In Complex With Mek27 H3 Pept. And
Cofactor Product Sah
pdb|2G46|B Chain B, Structure Of Vset In Complex With Mek27 H3 Pept. And
Cofactor Product Sah
pdb|3KMA|A Chain A, Crystal Structure Of Vset Under Condition A
pdb|3KMA|B Chain B, Crystal Structure Of Vset Under Condition A
pdb|3KMJ|A Chain A, Crystal Structure Of Vset Under Condition B
pdb|3KMT|A Chain A, Crystal Structure Of VsetSAHH3 TERNARY COMPLEX
pdb|3KMT|B Chain B, Crystal Structure Of VsetSAHH3 TERNARY COMPLEX
pdb|3KMT|C Chain C, Crystal Structure Of VsetSAHH3 TERNARY COMPLEX
Length = 119
Score = 30.8 bits (68), Expect = 1.7, Method: Composition-based stats.
Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 9/54 (16%)
Query: 415 ACNFGNISHFINHSCDPNLAVYAAYIQCLDPNLHRLPLFAIRDIQKGEQLSFSY 468
A FG I NHS DPN L L R+ +F I+ I GE+++ SY
Sbjct: 61 ALGFGAI---FNHSKDPNAR------HELTAGLKRMRIFTIKPIAIGEEITISY 105
>pdb|3F9Z|A Chain A, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y245f H4-Lys20
ADOHCY
pdb|3F9Z|B Chain B, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y245f H4-Lys20
ADOHCY
pdb|3F9Z|C Chain C, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y245f H4-Lys20
ADOHCY
pdb|3F9Z|D Chain D, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y245f H4-Lys20
ADOHCY
Length = 166
Score = 30.0 bits (66), Expect = 3.0, Method: Composition-based stats.
Identities = 33/119 (27%), Positives = 51/119 (42%), Gaps = 10/119 (8%)
Query: 351 GWGVQTLEDIPKGTYVTEYVGEILTYEAASLRDNQTYLFNLDFNGSTSFVIDAYFNGSTS 410
G GV + +G +V E+ G+++ A R+ L+ D ST + + S +
Sbjct: 41 GRGVIATKQFSRGDFVVEFHGDLIEITDAKKREA---LYAQD--PSTGCYMYYFQYLSKT 95
Query: 411 FVIDACNFGN-ISHFINHSCDPNLAVYAAYIQCLDPNLHRLPLFAIRDIQKGEQLSFSY 468
+ +DA N + INHS N I + L L A RDI GE+L + Y
Sbjct: 96 YCVDATRETNRLGRLINHSKCGNCQTKLHDID----GVPHLILIASRDIAAGEELLYDY 150
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.133 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,811,795
Number of Sequences: 62578
Number of extensions: 639528
Number of successful extensions: 1714
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 1645
Number of HSP's gapped (non-prelim): 34
length of query: 502
length of database: 14,973,337
effective HSP length: 103
effective length of query: 399
effective length of database: 8,527,803
effective search space: 3402593397
effective search space used: 3402593397
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)