Query psy7969
Match_columns 502
No_of_seqs 292 out of 1725
Neff 5.3
Searched_HMMs 46136
Date Fri Aug 16 23:28:10 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7969.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7969hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1141|consensus 100.0 4.6E-52 9.9E-57 448.3 4.6 232 108-382 591-841 (1262)
2 KOG1082|consensus 100.0 9.2E-46 2E-50 385.1 16.8 266 234-501 67-356 (364)
3 KOG4442|consensus 100.0 5.6E-42 1.2E-46 369.1 13.0 159 315-501 94-262 (729)
4 KOG1080|consensus 100.0 2.2E-29 4.8E-34 285.8 10.1 128 344-499 870-1005(1005)
5 KOG1079|consensus 99.9 3.2E-26 6.9E-31 246.5 9.7 140 313-473 557-713 (739)
6 smart00317 SET SET (Su(var)3-9 99.9 4.9E-23 1.1E-27 175.9 12.8 107 341-468 2-116 (116)
7 KOG1083|consensus 99.8 9.5E-22 2.1E-26 219.0 1.9 126 328-474 1166-1299(1306)
8 PF05033 Pre-SET: Pre-SET moti 99.8 2.6E-19 5.6E-24 154.6 6.9 98 234-331 4-103 (103)
9 smart00468 PreSET N-terminal t 99.7 6.4E-18 1.4E-22 145.3 7.5 90 234-323 6-98 (98)
10 KOG1085|consensus 99.7 2.8E-17 6E-22 163.6 9.2 123 333-473 250-381 (392)
11 COG2940 Proteins containing SE 99.7 2.2E-17 4.8E-22 178.1 4.9 170 317-499 310-480 (480)
12 PF00856 SET: SET domain; Int 99.5 2.1E-14 4.7E-19 127.2 9.0 115 351-469 1-162 (162)
13 cd01395 HMT_MBD Methyl-CpG bin 99.5 4.6E-15 1E-19 117.4 3.0 58 112-178 1-59 (60)
14 KOG1141|consensus 99.1 1.8E-10 3.8E-15 127.4 7.6 335 114-498 804-1261(1262)
15 KOG1081|consensus 98.9 3.4E-10 7.4E-15 122.1 2.1 146 315-500 289-438 (463)
16 KOG2589|consensus 98.8 3.7E-09 8E-14 109.1 3.4 114 349-491 136-252 (453)
17 smart00391 MBD Methyl-CpG bind 98.6 2.5E-08 5.5E-13 83.0 2.9 63 111-180 2-66 (77)
18 cd00122 MBD MeCP2, MBD1, MBD2, 98.3 2.5E-07 5.4E-12 73.8 2.4 56 112-175 1-58 (62)
19 cd01397 HAT_MBD Methyl-CpG bin 98.3 4.9E-07 1.1E-11 74.6 2.8 61 113-190 2-64 (73)
20 KOG2461|consensus 98.2 2.1E-06 4.7E-11 91.2 5.5 117 337-474 26-148 (396)
21 PF01429 MBD: Methyl-CpG bindi 98.0 2.6E-06 5.6E-11 70.8 2.6 64 111-181 5-71 (77)
22 smart00508 PostSET Cysteine-ri 96.2 0.0025 5.5E-08 42.7 1.5 17 484-500 2-18 (26)
23 smart00570 AWS associated with 96.0 0.0032 6.9E-08 48.8 1.2 23 315-337 28-50 (51)
24 cd01396 MeCP2_MBD MeCP2, MBD1, 94.8 0.018 3.9E-07 48.1 2.2 45 117-169 7-52 (77)
25 KOG2084|consensus 93.1 0.084 1.8E-06 55.9 3.7 43 424-474 208-251 (482)
26 KOG1337|consensus 79.1 1.5 3.3E-05 47.9 3.0 42 424-472 239-280 (472)
27 KOG1081|consensus 54.8 4.5 9.7E-05 44.6 0.3 128 348-500 121-265 (463)
28 PF08666 SAF: SAF domain; Int 44.7 13 0.00029 28.5 1.5 17 451-467 3-19 (63)
29 KOG1338|consensus 41.9 17 0.00037 39.4 2.2 41 420-470 217-260 (466)
30 PF00856 SET: SET domain; Int 31.4 28 0.0006 30.2 1.6 18 450-467 2-19 (162)
31 KOG2155|consensus 25.5 40 0.00086 37.2 1.7 57 410-473 198-254 (631)
32 smart00317 SET SET (Su(var)3-9 20.4 86 0.0019 26.0 2.5 22 447-469 9-30 (116)
33 smart00858 SAF This domain fam 20.1 67 0.0015 24.4 1.6 16 451-466 3-18 (64)
No 1
>KOG1141|consensus
Probab=100.00 E-value=4.6e-52 Score=448.35 Aligned_cols=232 Identities=26% Similarity=0.418 Sum_probs=187.6
Q ss_pred cccccCCCCcccccCccCCccccCCCCCcccCCCcceeeEEecCcccccccchhhHHHHhhcccceeeeeeccc---ccc
Q psy7969 108 REWASLNSPPIYDFGKKSPKRSLLGSPSIEPKRSTKLNLGTKLGCSKDVKNMKKEDQLEAVNSVQNVDVQEING---HIR 184 (502)
Q Consensus 108 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~v~l~~~~~---~~~ 184 (502)
+.=|||++|++|+|+|+++++|+ .+++.+||.||+|||.+||+|.|+.+ ||+|+.| |+.
T Consensus 591 ~g~npl~lp~~~~F~r~~a~~rs--------~~~~~fhv~yktpcg~~lr~~~el~r----------yL~et~c~flf~~ 652 (1262)
T KOG1141|consen 591 PGGNPLNLPYFLTFHRIRASHRS--------AYIRDFHVEYKTPCGMPLRMRIELYR----------YLVETRCKFLFVI 652 (1262)
T ss_pred CCCCccccceEEEeeehhhhhhh--------hhhhcceeeccCCCccchHHHHHHHH----------HHHHhcCcEEEEe
Confidence 34589999999999999999987 88999999999999999999999988 7888888 688
Q ss_pred ccccccccccchhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCeEEEeCCCCCCCCCCCEEeeeccC
Q psy7969 185 NFARNPQLIKTNKAELDYLREQLITSFLYDKRLIQMENLKRYEMEINVTTGNAVAPIYVINNVDLSCVPANFTHTNHNIP 264 (502)
Q Consensus 185 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~r~~ql~~l~~~e~~in~~~g~e~~pI~v~N~VD~~~pP~~F~YI~~ni~ 264 (502)
+|++.| |+++.|+-|- ++.+-.......|++.+||...|++|..++ +.|.|-.+.|+
T Consensus 653 ~f~~~~--------------------yV~~~r~~~p--~kp~~~~~Di~~g~e~vpis~~neids~~l-pq~ay~K~~ip 709 (1262)
T KOG1141|consen 653 GFDRAF--------------------YVVRHRAPNP--LKPGNRCTDIPCGREHVPISEKNEIDSHRL-PQAAYKKHMIP 709 (1262)
T ss_pred ecccch--------------------heeecccCCC--cCCcceeccccCCccccccceeecccCcCC-ccchhheeecc
Confidence 888888 4443333332 232222333346899999999999998654 58999999999
Q ss_pred CCCccCCC--CCccccccCCCCCCCCcc-ccccCCCC--------c----cccCCCceeeCCCCceEecCCCCCCCCC-C
Q psy7969 265 AEGVIVNE--EPIIWCECVDNCRDSSYC-CGQLNDSV--------T----AYDENKRLRIGQGTPIYECNKNCKCNAS-C 328 (502)
Q Consensus 265 ~~gv~~~~--~~~~gC~C~~~C~~~~~C-C~~~~~~~--------~----aY~~~grL~~~~~~~I~ECn~~C~C~~~-C 328 (502)
+.+..++. +.+.+|+|..+|.+...| |-++.... . .| +.+||.....+.+|||+..|+|.+. |
T Consensus 710 ~~~nl~n~~~~fl~scdc~~gcid~~kcachQltvk~~~t~p~~~v~~t~gy-kyKRl~e~~ptg~yEc~k~ckc~~~~C 788 (1262)
T KOG1141|consen 710 TNNNLSNRRKDFLQSCDCPTGCIDSMKCACHQLTVKKKTTGPNQNVASTNGY-KYKRLIEIRPTGPYECLKACKCCGPDC 788 (1262)
T ss_pred CCCcccccChhhhhcCCCCcchhhhhhhhHHHHHHHhhccCCCcccccCcch-hhHHHHHhcCCCHHHHHHhhccCcHHH
Confidence 99877654 457899999999999888 66543111 1 12 4456655556779999999999877 9
Q ss_pred CCcccccCcceeeEEeeecCCCCceeeecCCCCCCCEEEEEeeEeeeHHHHhhc
Q psy7969 329 PNRVIQLGTKIKLGIYKTYNDCGWGVQTLEDIPKGTYVTEYVGEILTYEAASLR 382 (502)
Q Consensus 329 ~NRvvQ~g~~~~L~IfRTs~~kGwGVfA~~dI~kGtfI~EY~GEVIt~~Eae~r 382 (502)
.||++|+|.+++|++|+| ..+|||++++.+|.+|.|||.|.|.+++.+-++..
T Consensus 789 ~nrmvqhg~qvRlq~fkt-~~kGWg~rclddi~~g~fVciy~g~~l~~~~sdks 841 (1262)
T KOG1141|consen 789 LNRMVQHGYQVRLQRFKT-IHKGWGRRCLDDITGGNFVCIYPGGALLHQISDKS 841 (1262)
T ss_pred HHHHhhcCceeEeeeccc-cccccceEeeeecCCceEEEEecchhhhhhhchhh
Confidence 999999999999999999 67899999999999999999999998877666555
No 2
>KOG1082|consensus
Probab=100.00 E-value=9.2e-46 Score=385.11 Aligned_cols=266 Identities=32% Similarity=0.580 Sum_probs=217.0
Q ss_pred cCCCCCCeEEEeCCCCCCCCCCCEEeeeccCCCCccCCCCCccccccCCCCCCCCc--c-ccccCCCCccccCCCc--ee
Q psy7969 234 TGNAVAPIYVINNVDLSCVPANFTHTNHNIPAEGVIVNEEPIIWCECVDNCRDSSY--C-CGQLNDSVTAYDENKR--LR 308 (502)
Q Consensus 234 ~g~e~~pI~v~N~VD~~~pP~~F~YI~~ni~~~gv~~~~~~~~gC~C~~~C~~~~~--C-C~~~~~~~~aY~~~gr--L~ 308 (502)
.|.+..||+++|+||.+.+ ..|.|+...++..+.........+|.|...|..... | |.+.++..++|..++. ..
T Consensus 67 ~~~e~~~v~~~n~id~~~~-~~f~y~~~~~~~~~~~~~~~~~~~c~C~~~~~~~~~~~C~C~~~n~~~~~~~~~~~~~~~ 145 (364)
T KOG1082|consen 67 LGSENLPVPLVNRIDEDAP-LYFQYIATEIVDPGELSDCENSTGCRCCSSCSSVLPLTCLCERHNGGLVAYTCDGDCGTL 145 (364)
T ss_pred CccccCceeeeeeccCCcc-ccceeccccccCccccccCccccCCCccCCCCCCCCccccChHhhCCccccccCCccccc
Confidence 4778899999999998877 899999999988874445567889999988776542 5 8888889999987775 44
Q ss_pred eCCCCceEecCCCCCCCCCCCCcccccCcceeeEEeeecCCCCceeeecCCCCCCCEEEEEeeEeeeHHHHhhcc-Ccce
Q psy7969 309 IGQGTPIYECNKNCKCNASCPNRVIQLGTKIKLGIYKTYNDCGWGVQTLEDIPKGTYVTEYVGEILTYEAASLRD-NQTY 387 (502)
Q Consensus 309 ~~~~~~I~ECn~~C~C~~~C~NRvvQ~g~~~~L~IfRTs~~kGwGVfA~~dI~kGtfI~EY~GEVIt~~Eae~r~-~~~Y 387 (502)
...+.++|||+..|+|++.|.|||+|+|.+.+|+||||.+ +||||||++.|++|+||+||+||+++..+++.+. ...|
T Consensus 146 ~~~~~~i~EC~~~C~C~~~C~nRv~q~g~~~~leIfrt~~-kGwgvRs~~~I~~G~fvcEyaGe~~t~~e~~~~~~~~~~ 224 (364)
T KOG1082|consen 146 GKFKEPVFECSVACGCHPDCANRVVQKGLQFHLEVFRTPE-KGWGVRTLDPIPAGEFVCEYAGEVLTSEEAQRRTHLREY 224 (364)
T ss_pred cccCccccccccCCCCCCcCcchhhccccccceEEEecCC-ceeeecccccccCCCeeEEEeeEecChHHhhhccccccc
Confidence 5667899999999999999999999999999999999955 9999999999999999999999999999999885 3444
Q ss_pred eEec---------cCCCCCc----ce-eeccccCCccEEEeccccCCcccccccccCCCceEEEEEEeecCCCeeEEEEE
Q psy7969 388 LFNL---------DFNGSTS----FV-IDAYFNGSTSFVIDACNFGNISHFINHSCDPNLAVYAAYIQCLDPNLHRLPLF 453 (502)
Q Consensus 388 lfdL---------d~~~~~~----~~-~~~~~~~~~~~~IDA~~~GNvaRFINHSC~PN~~v~~V~v~~~D~~~pria~F 453 (502)
+++. ++..... .. ..........++|||+..||++|||||||.||+.++.|+.++.++..++++||
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ida~~~GNv~RfinHSC~PN~~~~~v~~~~~~~~~~~i~ff 304 (364)
T KOG1082|consen 225 LDDDCDAYSIADREWVDESPVGNTFVAPSLPGGPGRELLIDAKPHGNVARFINHSCSPNLLYQAVFQDEFVLLYLRIGFF 304 (364)
T ss_pred cccccccchhhhccccccccccccccccccccCCCcceEEchhhcccccccccCCCCccceeeeeeecCCccchheeeee
Confidence 4432 1111000 00 00112235689999999999999999999999999999999999999999999
Q ss_pred EcCCCCCCCeEEEecCCCCCCCCCCC----CCCCCeEeecCCCCccccccCC
Q psy7969 454 AIRDIQKGEQLSFSYYKSVTKEPTRP----GGSNKVKCKCEAKNCRGYLNVE 501 (502)
Q Consensus 454 AlRdI~aGEELT~DYg~~~~~~~~~~----~~~~~~~C~CGs~~CRG~L~~e 501 (502)
|+++|.||||||+||+..+....... .......|.||+.+||+.++..
T Consensus 305 a~~~I~p~~ELT~dYg~~~~~~~~~~~~~~~~~~~~~c~c~~~~cr~~~~~~ 356 (364)
T KOG1082|consen 305 ALRDISPGEELTLDYGKAYKLLVQDGANIYTPVMKKNCNCGLEKCRGLLGSA 356 (364)
T ss_pred eccccCCCcccchhhcccccccccccccccccccchhhcCCCHHhCcccCCC
Confidence 99999999999999998865211111 1235679999999999998753
No 3
>KOG4442|consensus
Probab=100.00 E-value=5.6e-42 Score=369.07 Aligned_cols=159 Identities=33% Similarity=0.636 Sum_probs=143.2
Q ss_pred eEecCC-CCC-CCCCCCCcccccCcceeeEEeeecCCCCceeeecCCCCCCCEEEEEeeEeeeHHHHhhcc--------C
Q psy7969 315 IYECNK-NCK-CNASCPNRVIQLGTKIKLGIYKTYNDCGWGVQTLEDIPKGTYVTEYVGEILTYEAASLRD--------N 384 (502)
Q Consensus 315 I~ECn~-~C~-C~~~C~NRvvQ~g~~~~L~IfRTs~~kGwGVfA~~dI~kGtfI~EY~GEVIt~~Eae~r~--------~ 384 (502)
..||++ .|. |+..|.|+.+|+....+++||.| .++||||+|.++|++|+||+||.||||...|++.|. .
T Consensus 94 ~iECs~~~C~~cg~~C~NQRFQkkqyA~vevF~T-e~KG~GLRA~~dI~~g~FI~EY~GEVI~~~Ef~kR~~~Y~~d~~k 172 (729)
T KOG4442|consen 94 SIECSDRECPRCGVYCKNQRFQKKQYAKVEVFLT-EKKGCGLRAEEDIPKGQFILEYIGEVIEEKEFEKRVKRYAKDGIK 172 (729)
T ss_pred hcccCCccCCCccccccchhhhhhccCceeEEEe-cCcccceeeccccCCCcEEeeeccccccHHHHHHHHHHHHhcCCc
Confidence 579987 998 99999999999999999999999 699999999999999999999999999999999987 4
Q ss_pred cceeEeccCCCCCcceeeccccCCccEEEeccccCCcccccccccCCCceEEEEEEeecCCCeeEEEEEEcCCCCCCCeE
Q psy7969 385 QTYLFNLDFNGSTSFVIDAYFNGSTSFVIDACNFGNISHFINHSCDPNLAVYAAYIQCLDPNLHRLPLFAIRDIQKGEQL 464 (502)
Q Consensus 385 ~~YlfdLd~~~~~~~~~~~~~~~~~~~~IDA~~~GNvaRFINHSC~PN~~v~~V~v~~~D~~~pria~FAlRdI~aGEEL 464 (502)
+.|.|.|.. .++|||+.+||.||||||||+|||.+.-+.|. +..||+|||.|.|.+||||
T Consensus 173 h~Yfm~L~~----------------~e~IDAT~KGnlaRFiNHSC~PNa~~~KWtV~----~~lRvGiFakk~I~~GEEI 232 (729)
T KOG4442|consen 173 HYYFMALQG----------------GEYIDATKKGNLARFINHSCDPNAEVQKWTVP----DELRVGIFAKKVIKPGEEI 232 (729)
T ss_pred eEEEEEecC----------------CceecccccCcHHHhhcCCCCCCceeeeeeeC----CeeEEEEeEecccCCCcee
Confidence 556555532 78999999999999999999999999855454 6899999999999999999
Q ss_pred EEecCCCCCCCCCCCCCCCCeEeecCCCCccccccCC
Q psy7969 465 SFSYYKSVTKEPTRPGGSNKVKCKCEAKNCRGYLNVE 501 (502)
Q Consensus 465 T~DYg~~~~~~~~~~~~~~~~~C~CGs~~CRG~L~~e 501 (502)
||||++.... ....+|.||+.+|+||||-+
T Consensus 233 TFDYqf~rYG-------r~AQ~CyCgeanC~G~IGgk 262 (729)
T KOG4442|consen 233 TFDYQFDRYG-------RDAQPCYCGEANCRGWIGGK 262 (729)
T ss_pred eEeccccccc-------ccccccccCCcccccccCCC
Confidence 9999987643 35679999999999999965
No 4
>KOG1080|consensus
Probab=99.96 E-value=2.2e-29 Score=285.80 Aligned_cols=128 Identities=39% Similarity=0.772 Sum_probs=116.1
Q ss_pred eeecCCCCceeeecCCCCCCCEEEEEeeEeeeHHHHhhcc--------CcceeEeccCCCCCcceeeccccCCccEEEec
Q psy7969 344 YKTYNDCGWGVQTLEDIPKGTYVTEYVGEILTYEAASLRD--------NQTYLFNLDFNGSTSFVIDAYFNGSTSFVIDA 415 (502)
Q Consensus 344 fRTs~~kGwGVfA~~dI~kGtfI~EY~GEVIt~~Eae~r~--------~~~YlfdLd~~~~~~~~~~~~~~~~~~~~IDA 415 (502)
|.-+..+||||||++.|.+|++|+||+||+|...-|+.|+ ++.|+|.+|. ..+|||
T Consensus 870 F~~s~iH~wglfa~~~i~~~dmViEY~Ge~vR~~iad~RE~~Y~~~gi~~sYlfrid~----------------~~ViDA 933 (1005)
T KOG1080|consen 870 FGRSGIHGWGLFAMENIAAGDMVIEYRGELVRSSIADLREARYERMGIGDSYLFRIDD----------------EVVVDA 933 (1005)
T ss_pred cccccccccceeeccCccccceEEEeeceehhhhHHHHHHHHHhccCcccceeeeccc----------------ceEEec
Confidence 4444789999999999999999999999999887777776 7999999984 789999
Q ss_pred cccCCcccccccccCCCceEEEEEEeecCCCeeEEEEEEcCCCCCCCeEEEecCCCCCCCCCCCCCCCCeEeecCCCCcc
Q psy7969 416 CNFGNISHFINHSCDPNLAVYAAYIQCLDPNLHRLPLFAIRDIQKGEQLSFSYYKSVTKEPTRPGGSNKVKCKCEAKNCR 495 (502)
Q Consensus 416 ~~~GNvaRFINHSC~PN~~v~~V~v~~~D~~~pria~FAlRdI~aGEELT~DYg~~~~~~~~~~~~~~~~~C~CGs~~CR 495 (502)
++.||+||||||||+|||....+.++ +..+|+|||.|+|.+||||||||.+.... .+..|+|||++||
T Consensus 934 tk~gniAr~InHsC~PNCyakvi~V~----g~~~IvIyakr~I~~~EElTYDYkF~~e~--------~kipClCgap~Cr 1001 (1005)
T KOG1080|consen 934 TKKGNIARFINHSCNPNCYAKVITVE----GDKRIVIYSKRDIAAGEELTYDYKFPTED--------DKIPCLCGAPNCR 1001 (1005)
T ss_pred cccCchhheeecccCCCceeeEEEec----CeeEEEEEEecccccCceeeeeccccccc--------cccccccCCCccc
Confidence 99999999999999999999888887 67899999999999999999999887654 3789999999999
Q ss_pred cccc
Q psy7969 496 GYLN 499 (502)
Q Consensus 496 G~L~ 499 (502)
|+|+
T Consensus 1002 g~~n 1005 (1005)
T KOG1080|consen 1002 GFLN 1005 (1005)
T ss_pred cccC
Confidence 9985
No 5
>KOG1079|consensus
Probab=99.93 E-value=3.2e-26 Score=246.46 Aligned_cols=140 Identities=34% Similarity=0.594 Sum_probs=125.2
Q ss_pred CceEecC-CCCCCC----------CCCCCcccccCcceeeEEeeecCCCCceeeecCCCCCCCEEEEEeeEeeeHHHHhh
Q psy7969 313 TPIYECN-KNCKCN----------ASCPNRVIQLGTKIKLGIYKTYNDCGWGVQTLEDIPKGTYVTEYVGEILTYEAASL 381 (502)
Q Consensus 313 ~~I~ECn-~~C~C~----------~~C~NRvvQ~g~~~~L~IfRTs~~kGwGVfA~~dI~kGtfI~EY~GEVIt~~Eae~ 381 (502)
.+..||. +.|.+. .+|.|--+|++.+.++-+..+ .-.|||+|+++.+.+++||.||+||+|+.+||++
T Consensus 557 ~A~rECdPd~Cl~cg~~~~~d~~~~~C~N~~l~~~~qkr~llapS-dVaGwGlFlKe~v~KnefisEY~GE~IS~dEADr 635 (739)
T KOG1079|consen 557 LAVRECDPDVCLMCGNVDHFDSSKISCKNTNLQRGEQKRVLLAPS-DVAGWGLFLKESVSKNEFISEYTGEIISHDEADR 635 (739)
T ss_pred hhccccCchHHhccCcccccccCccccccchhhhhhhcceeechh-hccccceeeccccCCCceeeeecceeccchhhhh
Confidence 4678996 678652 369999999999999888877 6789999999999999999999999999999999
Q ss_pred cc------CcceeEeccCCCCCcceeeccccCCccEEEeccccCCcccccccccCCCceEEEEEEeecCCCeeEEEEEEc
Q psy7969 382 RD------NQTYLFNLDFNGSTSFVIDAYFNGSTSFVIDACNFGNISHFINHSCDPNLAVYAAYIQCLDPNLHRLPLFAI 455 (502)
Q Consensus 382 r~------~~~YlfdLd~~~~~~~~~~~~~~~~~~~~IDA~~~GNvaRFINHSC~PN~~v~~V~v~~~D~~~pria~FAl 455 (502)
|+ ..+|+|+|.. .|+|||+++||.+||+|||-.|||.+..+.+. +..||+|||.
T Consensus 636 RGkiYDr~~cSflFnln~----------------dyviDs~rkGnk~rFANHS~nPNCYAkvm~V~----GdhRIGifAk 695 (739)
T KOG1079|consen 636 RGKIYDRYMCSFLFNLNN----------------DYVIDSTRKGNKIRFANHSFNPNCYAKVMMVA----GDHRIGIFAK 695 (739)
T ss_pred cccccccccceeeeeccc----------------cceEeeeeecchhhhccCCCCCCcEEEEEEec----CCcceeeeeh
Confidence 99 6788888753 69999999999999999999999998877665 7899999999
Q ss_pred CCCCCCCeEEEecCCCCC
Q psy7969 456 RDIQKGEQLSFSYYKSVT 473 (502)
Q Consensus 456 RdI~aGEELT~DYg~~~~ 473 (502)
|+|.+||||||||.+.-.
T Consensus 696 RaIeagEELffDYrYs~~ 713 (739)
T KOG1079|consen 696 RAIEAGEELFFDYRYSPE 713 (739)
T ss_pred hhcccCceeeeeeccCcc
Confidence 999999999999998743
No 6
>smart00317 SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain. Putative methyl transferase, based on outlier plant homologues
Probab=99.89 E-value=4.9e-23 Score=175.89 Aligned_cols=107 Identities=47% Similarity=0.856 Sum_probs=90.4
Q ss_pred eEEeeecCCCCceeeecCCCCCCCEEEEEeeEeeeHHHHhhcc------C--cceeEeccCCCCCcceeeccccCCccEE
Q psy7969 341 LGIYKTYNDCGWGVQTLEDIPKGTYVTEYVGEILTYEAASLRD------N--QTYLFNLDFNGSTSFVIDAYFNGSTSFV 412 (502)
Q Consensus 341 L~IfRTs~~kGwGVfA~~dI~kGtfI~EY~GEVIt~~Eae~r~------~--~~YlfdLd~~~~~~~~~~~~~~~~~~~~ 412 (502)
++++++ +++|+||+|+++|++|++|++|.|.++...++.... + ..|+|.... .++
T Consensus 2 ~~~~~~-~~~G~gl~a~~~i~~g~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~ 64 (116)
T smart00317 2 LEVFKS-PGKGWGVRATEDIPKGEFIGEYVGEIITSEEAEERSKAYDTDGADSFYLFEIDS----------------DLC 64 (116)
T ss_pred cEEEec-CCCcEEEEECCccCCCCEEEEEEeEEECHHHHHHHHHHHHhcCCCCEEEEECCC----------------CEE
Confidence 567777 799999999999999999999999999887776652 2 355555421 589
Q ss_pred EeccccCCcccccccccCCCceEEEEEEeecCCCeeEEEEEEcCCCCCCCeEEEec
Q psy7969 413 IDACNFGNISHFINHSCDPNLAVYAAYIQCLDPNLHRLPLFAIRDIQKGEQLSFSY 468 (502)
Q Consensus 413 IDA~~~GNvaRFINHSC~PN~~v~~V~v~~~D~~~pria~FAlRdI~aGEELT~DY 468 (502)
||+...||++|||||||.||+.+..+..+ +..++.|+|+|+|++|||||+||
T Consensus 65 id~~~~~~~~~~iNHsc~pN~~~~~~~~~----~~~~~~~~a~r~I~~GeEi~i~Y 116 (116)
T smart00317 65 IDARRKGNIARFINHSCEPNCELLFVEVN----GDSRIVIFALRDIKPGEELTIDY 116 (116)
T ss_pred EeCCccCcHHHeeCCCCCCCEEEEEEEEC----CCcEEEEEECCCcCCCCEEeecC
Confidence 99999999999999999999998766554 34489999999999999999999
No 7
>KOG1083|consensus
Probab=99.83 E-value=9.5e-22 Score=218.97 Aligned_cols=126 Identities=35% Similarity=0.617 Sum_probs=108.2
Q ss_pred CCCccccc-CcceeeEEeeecCCCCceeeecCCCCCCCEEEEEeeEeeeHHHHhhcc-------CcceeEeccCCCCCcc
Q psy7969 328 CPNRVIQL-GTKIKLGIYKTYNDCGWGVQTLEDIPKGTYVTEYVGEILTYEAASLRD-------NQTYLFNLDFNGSTSF 399 (502)
Q Consensus 328 C~NRvvQ~-g~~~~L~IfRTs~~kGwGVfA~~dI~kGtfI~EY~GEVIt~~Eae~r~-------~~~YlfdLd~~~~~~~ 399 (502)
|.|+-+|+ +.-.+|++|+. +.+||||+|.++|++|+||+||+|+||+.++++.++ .++|...+
T Consensus 1166 c~nqrm~r~e~cp~L~v~~g-p~~G~~v~tk~PikagtfI~EYvGeVit~ke~e~~mmtl~~~d~~~~cL~I-------- 1236 (1306)
T KOG1083|consen 1166 CSNQRMQRHEECPPLEVFRG-PKKGWGVRTKEPIKAGTFIMEYVGEVITEKEFEPRMMTLYHNDDDHYCLVI-------- 1236 (1306)
T ss_pred hhhHHhhhhccCCCcceecc-CCCCccccccccccccchHHHHHHHHHHHHhhcccccccCCCCCccccccc--------
Confidence 77777765 45678999999 889999999999999999999999999999998883 23333333
Q ss_pred eeeccccCCccEEEeccccCCcccccccccCCCceEEEEEEeecCCCeeEEEEEEcCCCCCCCeEEEecCCCCCC
Q psy7969 400 VIDAYFNGSTSFVIDACNFGNISHFINHSCDPNLAVYAAYIQCLDPNLHRLPLFAIRDIQKGEQLSFSYYKSVTK 474 (502)
Q Consensus 400 ~~~~~~~~~~~~~IDA~~~GNvaRFINHSC~PN~~v~~V~v~~~D~~~pria~FAlRdI~aGEELT~DYg~~~~~ 474 (502)
....+||+.++||.+||+||||.|||.++..-++ +..|++|||+|||.+||||||||.+....
T Consensus 1237 --------~p~l~id~~R~~n~~RfinhscKPNc~~qkwSVN----G~~Rv~L~A~rDi~kGEELtYDYN~ks~~ 1299 (1306)
T KOG1083|consen 1237 --------DPGLFIDIPRMGNGARFINHSCKPNCEMQKWSVN----GEYRVGLFALRDLPKGEELTYDYNFKSFN 1299 (1306)
T ss_pred --------CccccCChhhccccccccccccCCCCcccccccc----ceeeeeeeecCCCCCCceEEEeccccccC
Confidence 2378999999999999999999999999977676 89999999999999999999999876543
No 8
>PF05033 Pre-SET: Pre-SET motif; InterPro: IPR007728 This region is found in a number of histone lysine methyltransferases (HMTase), N-terminal to the SET domain; it is generally described as the pre-SET domain. Histone lysine methylation is part of the histone code that regulated chromatin function and epigenetic control of gene function. Histone lysine methyltransferases (HMTase) differ both in their substrate specificity for the various acceptor lysines as well as in their product specificity for the number of methyl groups (one, two, or three) they transfer. With just one exception [], the HMTases belong to SET family that can be classified according to the sequences surrounding the SET domain [, ]. Structural studies on the human SET7/9, a mono-methylase, have revealed the molecular basis for the specificity of the enzyme for the histone-target and the roles of the invariant residues in the SET domain in determining the methylation specificities []. The pre-SET domain, as found in the SUV39 SET family, contains nine invariant cysteine residues that are grouped into two segments separated by a region of variable length. These 9 cysteines coordinate 3 zinc ions to form a triangular cluster, where each of the zinc ions is coordinated by 4 four cysteines to give a tetrahedral configuration. The function of this domain is structural, holding together 2 long segments of random coils and stabilising the SET domain. The C-terminal region including the post-SET domain is disordered when not interacting with a histone tail and in the absence of zinc. The three conserved cysteines in the post-SET domain form a zinc-binding site [] when coupled to a fourth conserved cysteine in the knot-like structure close to the SET domain active site []. The structured post-SET region brings in the C-terminal residues that participate in S-adenosylmethine-binding and histone tail interactions. The three conserved cysteine residues are essential for HMTase activity, as replacement with serine abolishes HMTase activity []. ; GO: 0008270 zinc ion binding, 0018024 histone-lysine N-methyltransferase activity, 0034968 histone lysine methylation, 0005634 nucleus; PDB: 3K5K_A 2O8J_D 3RJW_B 1ML9_A 1PEG_B 1MVH_A 1MVX_A 3BO5_A 2RFI_B 3MO5_B ....
Probab=99.78 E-value=2.6e-19 Score=154.58 Aligned_cols=98 Identities=45% Similarity=0.824 Sum_probs=72.5
Q ss_pred cCCCCCCeEEEeCCCCCCCCCCCEEeeeccCCCCcc-CCCCCccccccCCCCCCCCcc-ccccCCCCccccCCCceeeCC
Q psy7969 234 TGNAVAPIYVINNVDLSCVPANFTHTNHNIPAEGVI-VNEEPIIWCECVDNCRDSSYC-CGQLNDSVTAYDENKRLRIGQ 311 (502)
Q Consensus 234 ~g~e~~pI~v~N~VD~~~pP~~F~YI~~ni~~~gv~-~~~~~~~gC~C~~~C~~~~~C-C~~~~~~~~aY~~~grL~~~~ 311 (502)
.|+|.+||+++|+||.+.+|++|+||.++++++++. .+.....||+|.++|.....| |.+..+..++|+.+|+|.+..
T Consensus 4 ~g~e~~pI~~~N~vd~~~~p~~F~Yi~~~~~~~~~~~~~~~~~~~C~C~~~C~~~~~C~C~~~~~~~~~Y~~~g~l~~~~ 83 (103)
T PF05033_consen 4 RGKENVPIPVVNDVDDEPPPPNFEYIPENIYGEGVPDIDPEFLQGCDCSGDCSNPSNCECLQRNGGIFAYDSNGRLRIPD 83 (103)
T ss_dssp CTSSSS-EEEEESSSS--SSTSSEE-SS-EESTTSS-TBGGGTS----SSSSTCTTTSHHHCCTSSS-SB-TTSSBSSSS
T ss_pred CCccCCCEEEEeCCCCCCCCCCeEEeeeEEcCCCccccccccCccCccCCCCCCCCCCcCccccCccccccCCCcCccCC
Confidence 589999999999999999999999999999999876 344557899999889666678 888887789999999998888
Q ss_pred CCceEecCCCCCCCCCCCCc
Q psy7969 312 GTPIYECNKNCKCNASCPNR 331 (502)
Q Consensus 312 ~~~I~ECn~~C~C~~~C~NR 331 (502)
..+|||||+.|+|+.+|.||
T Consensus 84 ~~~i~EC~~~C~C~~~C~NR 103 (103)
T PF05033_consen 84 KPPIFECNDNCGCSPSCRNR 103 (103)
T ss_dssp TSEEE---TTSSS-TTSTT-
T ss_pred CCeEEeCCCCCCCCCCCCCC
Confidence 89999999999999999998
No 9
>smart00468 PreSET N-terminal to some SET domains. A Cys-rich putative Zn2+-binding domain that occurs N-terminal to some SET domains. Function is unknown. Unpublished.
Probab=99.73 E-value=6.4e-18 Score=145.32 Aligned_cols=90 Identities=32% Similarity=0.667 Sum_probs=81.3
Q ss_pred cCCCCCCeEEEeCCCCCCCCCCCEEeeeccCCCCcc--CCCCCccccccCCCCCCCCcc-ccccCCCCccccCCCceeeC
Q psy7969 234 TGNAVAPIYVINNVDLSCVPANFTHTNHNIPAEGVI--VNEEPIIWCECVDNCRDSSYC-CGQLNDSVTAYDENKRLRIG 310 (502)
Q Consensus 234 ~g~e~~pI~v~N~VD~~~pP~~F~YI~~ni~~~gv~--~~~~~~~gC~C~~~C~~~~~C-C~~~~~~~~aY~~~grL~~~ 310 (502)
.|+|.+||+++|+||++.+|++|+||++++++.++. ....+..||+|.++|.+...| |.+.+++.++|+..+++.+.
T Consensus 6 ~G~E~~pI~~vN~vD~~~~p~~F~Yi~~~~~~~gv~~~~~~~~~~gC~C~~~C~~~~~C~C~~~~~~~~~Y~~~~~~~~~ 85 (98)
T smart00468 6 NGKENVPVPLVNEVDEDPPPPDFEYISEYIYGQGVPIDRSPSPLVGCSCSGDCSSSNKCECARKNGGEFAYELNGGLRLK 85 (98)
T ss_pred CCccCCCcceEecCCCCCCCCCcEECcceEcCCCcccccCCCCCCCCcCCCCCCCCCcCCcHhhcCCccCcccCCCEEeC
Confidence 499999999999999999999999999999999985 356678999999999998845 88989999999888888899
Q ss_pred CCCceEecCCCCC
Q psy7969 311 QGTPIYECNKNCK 323 (502)
Q Consensus 311 ~~~~I~ECn~~C~ 323 (502)
.+.+|||||+.|+
T Consensus 86 ~~~~IyECn~~C~ 98 (98)
T smart00468 86 RKPLIYECNSRCS 98 (98)
T ss_pred CCCEEEcCCCCCC
Confidence 9999999999985
No 10
>KOG1085|consensus
Probab=99.70 E-value=2.8e-17 Score=163.63 Aligned_cols=123 Identities=29% Similarity=0.446 Sum_probs=101.9
Q ss_pred cccCcceeeEEeeecCCCCceeeecCCCCCCCEEEEEeeEeeeHHHHhhcc--------CcceeEeccCCCCCcceeecc
Q psy7969 333 IQLGTKIKLGIYKTYNDCGWGVQTLEDIPKGTYVTEYVGEILTYEAASLRD--------NQTYLFNLDFNGSTSFVIDAY 404 (502)
Q Consensus 333 vQ~g~~~~L~IfRTs~~kGwGVfA~~dI~kGtfI~EY~GEVIt~~Eae~r~--------~~~YlfdLd~~~~~~~~~~~~ 404 (502)
+..|....|.+... .++|.||+|...+.+|+||.||.|.+|.-.|+..|+ -..|+|-..++
T Consensus 250 vl~g~~egl~~~~~-dgKGRGv~a~~~F~rgdFVVEY~Gdliei~eAk~rE~~Ya~De~~GcYMYyF~h~---------- 318 (392)
T KOG1085|consen 250 VLKGTNEGLLEVYK-DGKGRGVRAKVNFERGDFVVEYRGDLIEISEAKVREEQYANDEEIGCYMYYFEHN---------- 318 (392)
T ss_pred HHhccccceeEEee-ccccceeEeecccccCceEEEEecceeeechHHHHHHHhccCcccceEEEeeecc----------
Confidence 44556666777666 679999999999999999999999999988888776 23455543332
Q ss_pred ccCCccEEEecccc-CCcccccccccCCCceEEEEEEeecCCCeeEEEEEEcCCCCCCCeEEEecCCCCC
Q psy7969 405 FNGSTSFVIDACNF-GNISHFINHSCDPNLAVYAAYIQCLDPNLHRLPLFAIRDIQKGEQLSFSYYKSVT 473 (502)
Q Consensus 405 ~~~~~~~~IDA~~~-GNvaRFINHSC~PN~~v~~V~v~~~D~~~pria~FAlRdI~aGEELT~DYg~~~~ 473 (502)
+..|+|||+.- +-.+|.||||=.+||....|.++ +.||+.+.|.|||.+||||+||||+...
T Consensus 319 ---sk~yCiDAT~et~~lGRLINHS~~gNl~TKvv~Id----g~pHLiLvA~rdIa~GEELlYDYGDRSk 381 (392)
T KOG1085|consen 319 ---SKKYCIDATKETPWLGRLINHSVRGNLKTKVVEID----GSPHLILVARRDIAQGEELLYDYGDRSK 381 (392)
T ss_pred ---CeeeeeecccccccchhhhcccccCcceeeEEEec----CCceEEEEeccccccchhhhhhccccch
Confidence 34899999976 45699999999999999888887 8899999999999999999999998653
No 11
>COG2940 Proteins containing SET domain [General function prediction only]
Probab=99.67 E-value=2.2e-17 Score=178.12 Aligned_cols=170 Identities=25% Similarity=0.391 Sum_probs=124.5
Q ss_pred ecCCCCCCCCCCCCcccccCcceeeEEeeecCCCCceeeecCCCCCCCEEEEEeeEeeeHHHHhhccCcceeEeccCCCC
Q psy7969 317 ECNKNCKCNASCPNRVIQLGTKIKLGIYKTYNDCGWGVQTLEDIPKGTYVTEYVGEILTYEAASLRDNQTYLFNLDFNGS 396 (502)
Q Consensus 317 ECn~~C~C~~~C~NRvvQ~g~~~~L~IfRTs~~kGwGVfA~~dI~kGtfI~EY~GEVIt~~Eae~r~~~~YlfdLd~~~~ 396 (502)
++...+.+...+.|...+.....+..+... ..+||||||+..|++|++|.+|.|+++...++..+.+..+.+.-. ..
T Consensus 310 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~fa~~~i~~~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 386 (480)
T COG2940 310 FSKSNVSKLKELLNSNGCKKRREPNVVQES-EIKGYGVFALESIKKGEFIIEYHGEIIRRKEAREREENYDLLGNE--FS 386 (480)
T ss_pred cccccCccccchhhhcccccccchhhhhhh-cccccceeehhhccchHHHHHhcCcccchHHHHhhhccccccccc--cc
Confidence 344444444456666666666666666666 789999999999999999999999999998888776222111100 00
Q ss_pred CcceeeccccCCccEEEeccccCCcccccccccCCCceEEEEEEeecCCCeeEEEEEEcCCCCCCCeEEEecCCCCCCCC
Q psy7969 397 TSFVIDAYFNGSTSFVIDACNFGNISHFINHSCDPNLAVYAAYIQCLDPNLHRLPLFAIRDIQKGEQLSFSYYKSVTKEP 476 (502)
Q Consensus 397 ~~~~~~~~~~~~~~~~IDA~~~GNvaRFINHSC~PN~~v~~V~v~~~D~~~pria~FAlRdI~aGEELT~DYg~~~~~~~ 476 (502)
-+......+++|+...|+++|||||||.||+........ +..++.++|+|||.+|||||+||+...+...
T Consensus 387 ------~~~~~~~~~~~d~~~~g~~~r~~nHS~~pN~~~~~~~~~----g~~~~~~~~~rDI~~geEl~~dy~~~~~~~~ 456 (480)
T COG2940 387 ------FGLLEDKDKVRDSQKAGDVARFINHSCTPNCEASPIEVN----GIFKISIYAIRDIKAGEELTYDYGPSLEDNR 456 (480)
T ss_pred ------hhhccccchhhhhhhcccccceeecCCCCCcceeccccc----ccceeeecccccchhhhhhccccccccccch
Confidence 000111278899999999999999999999998765443 3689999999999999999999999887622
Q ss_pred C-CCCCCCCeEeecCCCCcccccc
Q psy7969 477 T-RPGGSNKVKCKCEAKNCRGYLN 499 (502)
Q Consensus 477 ~-~~~~~~~~~C~CGs~~CRG~L~ 499 (502)
. .........|.||+..|++.++
T Consensus 457 ~~~~~~~~~~~~~~~~~~~~~~~~ 480 (480)
T COG2940 457 ELKKLLEKRWGCACGEDRCSHTMS 480 (480)
T ss_pred hhhhhhhhhhccccCCCccCCCCC
Confidence 1 1122345799999999999874
No 12
>PF00856 SET: SET domain; InterPro: IPR001214 The SET domain appears generally as one part of a larger multidomain protein, and recently there were described three structures of very different proteins with distinct domain compositions: Neurospora crassa DIM-5, a member of the Su(var) family of HKMTs which methylate histone H3 on lysine 9,human SET7 (also called SET9), which methylates H3 on lysine 4 and garden pea Rubisco LSMT, an enzyme that does not modify histones, but instead methylates lysine 14 in the flexible tail of the large subunit of the enzyme Rubisco. The SET domain itself turned out to be an uncommon structure. Although in all three studies, electron density maps revealed the location of the AdoMet or AdoHcy cofactor, the SET domain bears no similarity at all to the canonical/AdoMet-dependent methyltransferase fold. Strictly conserved in the C-terminal motif of the SET domain tyrosine could be involved in abstracting a proton from the protonated amino group of the substrate lysine, promoting its nucleophilic attack on the sulphonium methyl group of the AdoMet cofactor. In contrast to the AdoMet-dependent protein methyltranferases of the classical type, which tend to bind their polypeptide substrates on top of the cofactor, it is noted from the Rubisco LSMT structure that the AdoMet seems to bind in a separate cleft, suggesting how a polypeptide substrate could be subjected to multiple rounds of methylation without having to be released from the enzyme. In contrast, SET7/9 is able to add only a single methyl group to its substrate. It has been demonstrated that association of SET domain and myotubularin-related proteins modulates growth control []. The SET domain-containing Drosophila melanogaster (Fruit fly) protein, enhancer of zeste, has a function in segment determination and the mammalian homologue may be involved in the regulation of gene transcription and chromatin structure. Histone lysine methylation is part of the histone code that regulated chromatin function and epigenetic control of gene function. Histone lysine methyltransferases (HMTase) differ both in their substrate specificity for the various acceptor lysines as well as in their product specificity for the number of methyl groups (one, two, or three) they transfer. With just one exception [], the HMTases belong to SET family that can be classified according to the sequences surrounding the SET domain [, ]. Structural studies on the human SET7/9, a mono-methylase, have revealed the molecular basis for the specificity of the enzyme for the histone-target and the roles of the invariant residues in the SET domain in determining the methylation specificities []. The pre-SET domain, as found in the SUV39 SET family, contains nine invariant cysteine residues that are grouped into two segments separated by a region of variable length. These 9 cysteines coordinate 3 zinc ions to form to form a triangular cluster, where each of the zinc ions is coordinated by 4 four cysteines to give a tetrahedral configuration. The function of this domain is structural, holding together 2 long segments of random coils. The C-terminal region including the post-SET domain is disordered when not interacting with a histone tail and in the absence of zinc. The three conserved cysteines in the post-SET domain form a zinc-binding site when coupled to a fourth conserved cysteine in the knot-like structure close to the SET domain active site []. The structured post-SET region brings in the C-terminal residues that participate in S-adenosylmethine-binding and histone tail interactions. The three conserved cysteine residues are essential for HMTase activity, as replacement with serine abolishes HMTase activity [], []. ; GO: 0005515 protein binding; PDB: 3TG5_A 3S7F_A 3RIB_B 3TG4_A 3S7J_A 3S7D_A 3S7B_A 3H6L_A 3SMT_A 3K5K_A ....
Probab=99.54 E-value=2.1e-14 Score=127.21 Aligned_cols=115 Identities=28% Similarity=0.290 Sum_probs=74.0
Q ss_pred CceeeecCCCCCCCEEEEEeeEeeeHHHHhhcc--------C---ccee--E------------------------ec-c
Q psy7969 351 GWGVQTLEDIPKGTYVTEYVGEILTYEAASLRD--------N---QTYL--F------------------------NL-D 392 (502)
Q Consensus 351 GwGVfA~~dI~kGtfI~EY~GEVIt~~Eae~r~--------~---~~Yl--f------------------------dL-d 392 (502)
|+||+|+++|++|++|++..+.+++..++.... . .... + .. .
T Consensus 1 GrGl~At~dI~~Ge~I~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (162)
T PF00856_consen 1 GRGLFATRDIKAGEVILIPRPAILTPDEVSPQPELLRLQLSKALEEQSRSDFSIQKKQKAEKSERSPQLESLHSISLRSE 80 (162)
T ss_dssp SEEEEESS-B-TTEEEEEESEEEEEHHHHHCHHHHSHHTTCSSSCSHHTTHHHHHHHHHHHHHHHHHHHHHHHHHCHTTT
T ss_pred CEEEEECccCCCCCEEEEECcceEEehhhhhcccchhhhhhhhhcccccccccccccccccccccccccccccccccccc
Confidence 899999999999999999999999988775520 0 0000 0 00 0
Q ss_pred CCCCCcc---------eeeccccCCccEEEeccccCCcccccccccCCCceEEEEEEeecCCCeeEEEEEEcCCCCCCCe
Q psy7969 393 FNGSTSF---------VIDAYFNGSTSFVIDACNFGNISHFINHSCDPNLAVYAAYIQCLDPNLHRLPLFAIRDIQKGEQ 463 (502)
Q Consensus 393 ~~~~~~~---------~~~~~~~~~~~~~IDA~~~GNvaRFINHSC~PN~~v~~V~v~~~D~~~pria~FAlRdI~aGEE 463 (502)
....... ..............++.....++.|+||||.|||.+...+. .....+.|+|.|+|++|||
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~d~~NHsc~pn~~~~~~~~----~~~~~~~~~a~r~I~~GeE 156 (162)
T PF00856_consen 81 LQFSQAFQWSWFISWTRSDFSSRSFSEDDRDGIALYPFADMLNHSCDPNCEVSFDFD----GDGGCLVVRATRDIKKGEE 156 (162)
T ss_dssp CCTCCHHHHHHHHHHHHHEEEEEEETTEEEEEEEEETGGGGSEEESSTSEEEEEEEE----TTTTEEEEEESS-B-TTSB
T ss_pred ccccccccchhhccccceeeeccccccccccccccCcHhHheccccccccceeeEee----cccceEEEEECCccCCCCE
Confidence 0000000 00000011123456677778899999999999999876543 3568999999999999999
Q ss_pred EEEecC
Q psy7969 464 LSFSYY 469 (502)
Q Consensus 464 LT~DYg 469 (502)
||++||
T Consensus 157 i~isYG 162 (162)
T PF00856_consen 157 IFISYG 162 (162)
T ss_dssp EEEEST
T ss_pred EEEEEC
Confidence 999997
No 13
>cd01395 HMT_MBD Methyl-CpG binding domains (MBD) present in putative histone methyltransferases (HMT) such as CLLD8 and SETDB1 proteins; CLLD8 contains a MBD, a PreSET and a bifurcated SET domain, suggesting that CLLD8 might be associated with methylation-mediated transcriptional repression. SETDB1 and other proteins in this group have a similar domain architecture. SETDB1 is a novel KAP-1-associated histone H3, lysine 9-specific methyltransferase that contributes to HP1-mediated silencing of euchromatic genes by KRAB zinc-finger proteins.
Probab=99.52 E-value=4.6e-15 Score=117.35 Aligned_cols=58 Identities=21% Similarity=0.302 Sum_probs=52.7
Q ss_pred cCCCCcccccCccCCccccCCCCCcccCCCcceeeEEecCcccccccchhh-HHHHhhcccceeeeee
Q psy7969 112 SLNSPPIYDFGKKSPKRSLLGSPSIEPKRSTKLNLGTKLGCSKDVKNMKKE-DQLEAVNSVQNVDVQE 178 (502)
Q Consensus 112 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~-~~~~~~~~~~~v~l~~ 178 (502)
||..|++|||+|.+.+|++ . +.+++|+|++|||+.||||.|| .||.+|.+..+||.|.
T Consensus 1 PL~~Pll~gw~R~~~~~~~--------~-~~k~~V~Y~aPCGr~Lr~~~EV~~YL~~t~~~L~~d~Fs 59 (60)
T cd01395 1 PLHTPLLCGFQRMKYRARV--------G-KVKKHVIYKAPCGRSLRNMSEVHRYLRETCSFLTVDNFS 59 (60)
T ss_pred CcccccccCeEEEEEeccC--------C-CcccceEEECCcchhhhcHHHHHHHHHhccccceeeccc
Confidence 8999999999999988865 1 6899999999999999999999 9999999999999654
No 14
>KOG1141|consensus
Probab=99.08 E-value=1.8e-10 Score=127.41 Aligned_cols=335 Identities=26% Similarity=0.434 Sum_probs=237.8
Q ss_pred CCCcccccCccCCccccCCCCCcccCCCcceeeEEecCcccccccchhhH-HHHhhcccceeeeeecccccccccccccc
Q psy7969 114 NSPPIYDFGKKSPKRSLLGSPSIEPKRSTKLNLGTKLGCSKDVKNMKKED-QLEAVNSVQNVDVQEINGHIRNFARNPQL 192 (502)
Q Consensus 114 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~-~~~~~~~~~~v~l~~~~~~~~~~~~~p~~ 192 (502)
..|+--||||+- + --.++.+++|--||+.-++-..++. +.--+.+..|+|.|.|++.+..-..+.+-
T Consensus 804 fkt~~kGWg~rc----l--------ddi~~g~fVciy~g~~l~~~~sdks~~~~~~~~~~~id~~~f~~~~dt~~~~tvD 871 (1262)
T KOG1141|consen 804 FKTIHKGWGRRC----L--------DDITGGNFVCIYPGGALLHQISDKSEYIHVTRSLLTIDCFSFDARIDTATYITVD 871 (1262)
T ss_pred ccccccccceEe----e--------eecCCceEEEEecchhhhhhhchhhhhcccchhhhcccccchhccccccceeecc
Confidence 345566888722 2 1256779999999999999999995 54455999999999999887776666644
Q ss_pred ccchhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCeEEEeCCCCCCCCCCCEEeeeccCCCC---c-
Q psy7969 193 IKTNKAELDYLREQLITSFLYDKRLIQMENLKRYEMEINVTTGNAVAPIYVINNVDLSCVPANFTHTNHNIPAEG---V- 268 (502)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~r~~ql~~l~~~e~~in~~~g~e~~pI~v~N~VD~~~pP~~F~YI~~ni~~~g---v- 268 (502)
.+- .. ++.+. .|.+..||+.+|.+|.+.+|. -.|........+ +
T Consensus 872 ~~g-------------------------~d----~~d~~--~g~sg~~~p~~~~~d~~~~~~-c~d~~~~~~~~~~~~~s 919 (1262)
T KOG1141|consen 872 DKG-------------------------LD----VADFS--LGTSGIPIPLVNSVDNDEPPS-CEDSKRRFQYNDQVDIS 919 (1262)
T ss_pred ccc-------------------------cc----hhhhh--ccccCCCCccccccccCCCcc-ccccceeecccccchhh
Confidence 310 00 22222 478899999999999887763 233222211111 1
Q ss_pred cCCCCCccccccCCCCCCCCcc-ccccCCCC-------ccccCCCcee-------eCCCCceEecCCCCCCCCCCCCccc
Q psy7969 269 IVNEEPIIWCECVDNCRDSSYC-CGQLNDSV-------TAYDENKRLR-------IGQGTPIYECNKNCKCNASCPNRVI 333 (502)
Q Consensus 269 ~~~~~~~~gC~C~~~C~~~~~C-C~~~~~~~-------~aY~~~grL~-------~~~~~~I~ECn~~C~C~~~C~NRvv 333 (502)
........||.|.+.|.+...| |.+..... +.++....+. -......+||+..|.|...|.|+++
T Consensus 920 ~~~~~~~~~~s~d~hp~d~~~~~~~~~~~~~~~~cpp~~s~d~~~~~~eS~~~~ns~~~~~f~e~~~hss~~~~e~~~~v 999 (1262)
T KOG1141|consen 920 SVSRDFCSGCSCDGHPSDASKCECQQLSIEAMKRCPPNLSFDGHDELYESSEKQNSFLKLFFFECNDHSSCHRKEYNRVV 999 (1262)
T ss_pred hhccccccccccCCCCcccCcccCCCCChhhhcCCCCccccCchhhhhhhhhhcchhhhccceeccccchhcccccchhh
Confidence 1233456799999999888877 55443211 1111110000 0012246899999999999999999
Q ss_pred ccCcceee--------EEeeecCCCCceeeecCCCCCCCEEEEEeeEeeeHHHHhhcc---CcceeEeccCCCC------
Q psy7969 334 QLGTKIKL--------GIYKTYNDCGWGVQTLEDIPKGTYVTEYVGEILTYEAASLRD---NQTYLFNLDFNGS------ 396 (502)
Q Consensus 334 Q~g~~~~L--------~IfRTs~~kGwGVfA~~dI~kGtfI~EY~GEVIt~~Eae~r~---~~~YlfdLd~~~~------ 396 (502)
|.+.+.++ .||++ ...|||+++..||+.-+||++|+|...+..-+.... .+.|.-++|....
T Consensus 1000 ~~~~~~~me~~s~~~l~i~~~-~~~~~~~~edtD~~~~~~~~~~~~~ppt~~l~~~~r~aqad~~sn~~D~~~~~~l~es 1078 (1262)
T KOG1141|consen 1000 QNNIKYPMEVSSFNDLQIFKT-AQSGWGVREDTDIPQSTFICTYVGAPPTDDLADELRNAQADQYSNDLDLKDTVELEES 1078 (1262)
T ss_pred hcCCccceeeeeccccccccc-ccccccccccccCCCCcccccccCCCCchhhHHHHhhhhhccccCccchhhhhhhhhc
Confidence 99988775 46666 568999999999999999999999998776654332 3444333321100
Q ss_pred ------------------------Cc-----------c------------------------------------------
Q psy7969 397 ------------------------TS-----------F------------------------------------------ 399 (502)
Q Consensus 397 ------------------------~~-----------~------------------------------------------ 399 (502)
+. +
T Consensus 1079 ~~~~~T~~r~~t~~~~~~~~~d~dd~q~I~k~ve~qd~~~~~~~T~~~~RQ~~~~s~k~~~~~s~~~~~~ts~~~~~~dk 1158 (1262)
T KOG1141|consen 1079 REDHETDFRGDTSDYDDEEGSDGDDGQDIMKMVERQDSSESGEETKRLTRQKRKQSKKSGKGGSVEKDDTTSRDSMEKDK 1158 (1262)
T ss_pred ccccccccCCCCCCCcccccccCccHHHHHHHhhcccccccccccchhhhhhhhhhhhcccCccccccccCccchhhhcc
Confidence 00 0
Q ss_pred ---------eeeccccCCccEEEeccccCCcccccccccCCCceEEEEEEeecCCCeeEEEEEEcCCCCCCCeEEEecCC
Q psy7969 400 ---------VIDAYFNGSTSFVIDACNFGNISHFINHSCDPNLAVYAAYIQCLDPNLHRLPLFAIRDIQKGEQLSFSYYK 470 (502)
Q Consensus 400 ---------~~~~~~~~~~~~~IDA~~~GNvaRFINHSC~PN~~v~~V~v~~~D~~~pria~FAlRdI~aGEELT~DYg~ 470 (502)
-.+.|+.....|+|||+.-||++||+||||+||+.+++|+++.+|.+.|.+||||.+-|+||+||||||++
T Consensus 1159 ges~~~~~~~~~~y~~~~~~yvIDAk~eGNlGRfLNHSC~PNl~VQnVfvdTHdlrfPwVAFFt~kyVkAgtELTWDY~Y 1238 (1262)
T KOG1141|consen 1159 GESKDEPVFNWDKYFEPFPLYVIDAKQEGNLGRFLNHSCDPNLHVQNVFVDTHDLRFPWVAFFTRKYVKAGTELTWDYQY 1238 (1262)
T ss_pred CccCcccccchhhccCCCceEEEecccccchhhhhccCCCccceeeeeeeeccccCCchhhhhhhhhhccCceeeeeccc
Confidence 00123333467999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCeEeecCCCCccccc
Q psy7969 471 SVTKEPTRPGGSNKVKCKCEAKNCRGYL 498 (502)
Q Consensus 471 ~~~~~~~~~~~~~~~~C~CGs~~CRG~L 498 (502)
.... ...+...|+||+.+|||.|
T Consensus 1239 e~g~-----v~~keL~C~CGa~~CrgrL 1261 (1262)
T KOG1141|consen 1239 EQGQ-----VATKELTCHCGAENCRGRL 1261 (1262)
T ss_pred cccc-----cccceEEEecChhhhhccc
Confidence 8765 2345679999999999987
No 15
>KOG1081|consensus
Probab=98.92 E-value=3.4e-10 Score=122.14 Aligned_cols=146 Identities=30% Similarity=0.506 Sum_probs=105.7
Q ss_pred eEec-CCCCCCCCCCCCcccccCcceeeEEeeecCCCCceeeecCCCCCCCEEEEEeeEeeeHHHHhhccCc---ceeEe
Q psy7969 315 IYEC-NKNCKCNASCPNRVIQLGTKIKLGIYKTYNDCGWGVQTLEDIPKGTYVTEYVGEILTYEAASLRDNQ---TYLFN 390 (502)
Q Consensus 315 I~EC-n~~C~C~~~C~NRvvQ~g~~~~L~IfRTs~~kGwGVfA~~dI~kGtfI~EY~GEVIt~~Eae~r~~~---~Ylfd 390 (502)
.++| +..|.+...|.|+-........ . .+ +|..+|.+| +|+++...+...+... .-+.+
T Consensus 289 ~~~~~p~~~~~~~~~~~~~~sk~~~~e-------~-~~---~~~~~~~k~------vg~~i~~~e~~~~~~~~~~~~~~~ 351 (463)
T KOG1081|consen 289 AYEVHPKVCSAEERCHNQQFSKESYPE-------P-QK---TAKADIRKG------VGEVIDDKECKARLQRVKESDLVD 351 (463)
T ss_pred hhhhcccccccccccccchhhhhcccc-------c-ch---hhHHhhhcc------cCcccchhhheeehhhhhccchhh
Confidence 4455 6889999999988865443322 1 12 788888888 8999998887666511 10110
Q ss_pred ccCCCCCcceeeccccCCccEEEeccccCCcccccccccCCCceEEEEEEeecCCCeeEEEEEEcCCCCCCCeEEEecCC
Q psy7969 391 LDFNGSTSFVIDAYFNGSTSFVIDACNFGNISHFINHSCDPNLAVYAAYIQCLDPNLHRLPLFAIRDIQKGEQLSFSYYK 470 (502)
Q Consensus 391 Ld~~~~~~~~~~~~~~~~~~~~IDA~~~GNvaRFINHSC~PN~~v~~V~v~~~D~~~pria~FAlRdI~aGEELT~DYg~ 470 (502)
.- ..+... ...||+...||.+||+||||.||+.-....+ .+..++++||.+.|++|+|||++|..
T Consensus 352 ~~---------~~~~e~--~~~id~~~~~n~sr~~nh~~~~~v~~~k~~~----~~~t~~~~~a~~~i~~g~e~t~~~n~ 416 (463)
T KOG1081|consen 352 FY---------MVFIQK--DRIIDAGPKGNYSRFLNHSCQPNVETEKWQV----IGDTRVGLFAPRQIEAGEELTFNYNG 416 (463)
T ss_pred hh---------hhhhhc--ccccccccccchhhhhcccCCCceeechhhe----ecccccccccccccccchhhhheeec
Confidence 00 000111 2289999999999999999999998754332 36799999999999999999999987
Q ss_pred CCCCCCCCCCCCCCeEeecCCCCccccccC
Q psy7969 471 SVTKEPTRPGGSNKVKCKCEAKNCRGYLNV 500 (502)
Q Consensus 471 ~~~~~~~~~~~~~~~~C~CGs~~CRG~L~~ 500 (502)
.-. .+...|.||+.+|.+.++.
T Consensus 417 ~~~--------~~~~~~~~~~e~~~~~~~k 438 (463)
T KOG1081|consen 417 NCE--------GNEKRCCCGSENCTETKGK 438 (463)
T ss_pred ccc--------CCcceEeecccccccCCcc
Confidence 643 3668999999999998864
No 16
>KOG2589|consensus
Probab=98.77 E-value=3.7e-09 Score=109.08 Aligned_cols=114 Identities=21% Similarity=0.325 Sum_probs=79.8
Q ss_pred CCCceeeecCCCCCCCEEEEEeeEeeeHHHHhhcc---CcceeEeccCCCCCcceeeccccCCccEEEeccccCCccccc
Q psy7969 349 DCGWGVQTLEDIPKGTYVTEYVGEILTYEAASLRD---NQTYLFNLDFNGSTSFVIDAYFNGSTSFVIDACNFGNISHFI 425 (502)
Q Consensus 349 ~kGwGVfA~~dI~kGtfI~EY~GEVIt~~Eae~r~---~~~YlfdLd~~~~~~~~~~~~~~~~~~~~IDA~~~GNvaRFI 425 (502)
..|--|.|++.+.+|+-|-..+|-|+...+++.+. +..--|.+-+....+ . |..+-.-|+||
T Consensus 136 ~~gAkivst~~w~~ndkIe~LvGcIaeLse~eE~~ll~~g~nDFSvmyStRk~---------c------aqLwLGPaafI 200 (453)
T KOG2589|consen 136 QNGAKIVSTKSWSRNDKIELLVGCIAELSEAEERSLLRGGGNDFSVMYSTRKR---------C------AQLWLGPAAFI 200 (453)
T ss_pred CCCceEEeeccccCCccHHHhhhhhhhcChhhhHHHHhccCCceeeeeecccc---------h------hhheeccHHhh
Confidence 35677888899999999999999998777777663 111112221111111 0 12223456899
Q ss_pred ccccCCCceEEEEEEeecCCCeeEEEEEEcCCCCCCCeEEEecCCCCCCCCCCCCCCCCeEeecCC
Q psy7969 426 NHSCDPNLAVYAAYIQCLDPNLHRLPLFAIRDIQKGEQLSFSYYKSVTKEPTRPGGSNKVKCKCEA 491 (502)
Q Consensus 426 NHSC~PN~~v~~V~v~~~D~~~pria~FAlRdI~aGEELT~DYg~~~~~~~~~~~~~~~~~C~CGs 491 (502)
||.|.|||.+.. .+...+.|.++|||+||||||--||..+.. .+...|.|-+
T Consensus 201 NHDCrpnCkFvs-------~g~~tacvkvlRDIePGeEITcFYgs~fFG-------~~N~~CeC~T 252 (453)
T KOG2589|consen 201 NHDCRPNCKFVS-------TGRDTACVKVLRDIEPGEEITCFYGSGFFG-------ENNEECECVT 252 (453)
T ss_pred cCCCCCCceeec-------CCCceeeeehhhcCCCCceeEEeecccccC-------CCCceeEEee
Confidence 999999999853 256789999999999999999999999875 3445677743
No 17
>smart00391 MBD Methyl-CpG binding domain. Methyl-CpG binding domain, also known as the TAM (TTF-IIP5, ARBP, MeCP1) domain
Probab=98.59 E-value=2.5e-08 Score=83.02 Aligned_cols=63 Identities=14% Similarity=0.284 Sum_probs=49.6
Q ss_pred ccCCCCcccccCccCCccccCCCCCcccCCCcceeeEEecCcccccccchhh-HHHHhhccc-ceeeeeecc
Q psy7969 111 ASLNSPPIYDFGKKSPKRSLLGSPSIEPKRSTKLNLGTKLGCSKDVKNMKKE-DQLEAVNSV-QNVDVQEIN 180 (502)
Q Consensus 111 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~-~~~~~~~~~-~~v~l~~~~ 180 (502)
+||..|+-+||+|....|+. | +...+.+|.|.+|||+.||+|.|| .||.+++.- .+++.|.|+
T Consensus 2 ~~~~~Plp~GW~R~~~~r~~-g------~~~~~~dV~Y~sP~GkklRs~~ev~~YL~~~~~~~~~~~~F~F~ 66 (77)
T smart00391 2 DPLRLPLPCGWRRETKQRKS-G------RSAGKFDVYYISPCGKKLRSKSELARYLHKNGDLSLDLECFDFN 66 (77)
T ss_pred CcccCCCCCCcEEEEEEecC-C------CCCCcccEEEECCCCCeeeCHHHHHHHHHhCCCcccccccccCc
Confidence 68999999999998877765 1 235689999999999999999999 788777653 445544333
No 18
>cd00122 MBD MeCP2, MBD1, MBD2, MBD3, MBD4, CLLD8-like, and BAZ2A-like proteins constitute a family of proteins that share the methyl-CpG-binding domain (MBD). The MBD consists of about 70 residues and is defined as the minimal region required for binding to methylated DNA by a methyl-CpG-binding protein which binds specifically to methylated DNA. The MBD can recognize a single symmetrically methylated CpG either as naked DNA or within chromatin. MeCP2, MBD1 and MBD2 (and likely MBD3) form complexes with histone deacetylase and are involved in histone deacetylase-dependent repression of transcription. MBD4 is an endonuclease that forms a complex with the DNA mismatch-repair protein MLH1. The MBDs present in putative chromatin remodelling subunit, BAZ2A, and putative histone methyltransferase, CLLD8, represent two phylogenetically distinct groups within the MBD protein family.
Probab=98.34 E-value=2.5e-07 Score=73.77 Aligned_cols=56 Identities=18% Similarity=0.207 Sum_probs=45.5
Q ss_pred cCCCCcccccCccCCccccCCCCCcccCCCcceeeEEecCcccccccchhh-HHHHhh-cccceee
Q psy7969 112 SLNSPPIYDFGKKSPKRSLLGSPSIEPKRSTKLNLGTKLGCSKDVKNMKKE-DQLEAV-NSVQNVD 175 (502)
Q Consensus 112 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~-~~~~~~-~~~~~v~ 175 (502)
||.+|+.+||+|..-.|+. | ...+.+|.|.+|||+.||+|.|| .||+++ .+..+++
T Consensus 1 ~l~~P~p~GW~R~~~~r~~-g-------~~~k~dv~Y~sP~Gk~~Rs~~ev~~yL~~~~~~~l~~~ 58 (62)
T cd00122 1 PLRDPLPPGWKRELVIRKS-G-------SAGKGDVYYYSPCGKKLRSKPEVARYLEKTGPSSLDLE 58 (62)
T ss_pred CCCCCCCCCeEEEEEEcCC-C-------CCCcceEEEECCCCceecCHHHHHHHHHhCCCCCCcHH
Confidence 6889999999998877654 1 35789999999999999999999 888887 4444444
No 19
>cd01397 HAT_MBD Methyl-CpG binding domains (MBD) present in putative chromatin remodelling factor such as BAZ2A; BAZ2A contains a MBD, DDT, PHD-type zinc finger and Bromo domain suggesting that BAZ2A might be associated with histone acetyltransferase (HAT) activity. The Drosophila melanogaster toutatis protein, a putative subunit of the chromatin-remodeling complex, and other such proteins in this group share a similar domain architecture with BAZ2A, as does the Caenorhabditis elegans flectin homolog.
Probab=98.27 E-value=4.9e-07 Score=74.56 Aligned_cols=61 Identities=18% Similarity=0.270 Sum_probs=48.1
Q ss_pred CCCCcccccCccCCccccCCCCCcccCCCcceeeEEecCcccccccchhh-HHHHhh-cccceeeeeecccccccccccc
Q psy7969 113 LNSPPIYDFGKKSPKRSLLGSPSIEPKRSTKLNLGTKLGCSKDVKNMKKE-DQLEAV-NSVQNVDVQEINGHIRNFARNP 190 (502)
Q Consensus 113 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~-~~~~~~-~~~~~v~l~~~~~~~~~~~~~p 190 (502)
|.+|+.+||+|-.-.|+. | .+.+.+|.|.+|||+.||++.|| .+|... .+..++| +|++.+
T Consensus 2 ~r~Pl~~GW~Re~vir~~-~-------~~~~~dV~Y~aPcGKklRs~~ev~~yL~~~~~~~Lt~d---------nFsF~~ 64 (73)
T cd01397 2 LRVPLELGWRRETRIRGL-G-------GRIQGEVAYYAPCGKKLRQYPEVIKYLSKNGISLLSRE---------NFSFSA 64 (73)
T ss_pred ccCCCCCCceeEEEeccC-C-------CCccceEEEECCCCcccccHHHHHHHHHhCCccCccHh---------HccccC
Confidence 678999999997766654 1 35778999999999999999999 787753 4666666 666655
No 20
>KOG2461|consensus
Probab=98.16 E-value=2.1e-06 Score=91.24 Aligned_cols=117 Identities=23% Similarity=0.269 Sum_probs=86.2
Q ss_pred cceeeEEeee-cCCCCceeeecCCCCCCCEEEEEeeEeeeHHHHhhccCcceeEeccCCCCCcceeeccccCCccEEEec
Q psy7969 337 TKIKLGIYKT-YNDCGWGVQTLEDIPKGTYVTEYVGEILTYEAASLRDNQTYLFNLDFNGSTSFVIDAYFNGSTSFVIDA 415 (502)
Q Consensus 337 ~~~~L~IfRT-s~~kGwGVfA~~dI~kGtfI~EY~GEVIt~~Eae~r~~~~YlfdLd~~~~~~~~~~~~~~~~~~~~IDA 415 (502)
....|.|..+ .+..|.||++...|++|+--+-|.|+++ ..+..+-.+..|+|.+.... ..-++||+
T Consensus 26 LP~~l~i~~Ssv~~~~lgV~s~~~i~~G~~FGP~~G~~~-~~~~~~~~n~~y~W~I~~~d------------~~~~~iDg 92 (396)
T KOG2461|consen 26 LPPELRIKPSSVPVTGLGVWSNASILPGTSFGPFEGEII-ASIDSKSANNRYMWEIFSSD------------NGYEYIDG 92 (396)
T ss_pred CCCceEeeccccCCccccccccccccCcccccCccCccc-cccccccccCcceEEEEeCC------------CceEEecc
Confidence 3444556544 3567899999999999999999999982 22222333456766654322 12689998
Q ss_pred cc--cCCcccccccccCC---CceEEEEEEeecCCCeeEEEEEEcCCCCCCCeEEEecCCCCCC
Q psy7969 416 CN--FGNISHFINHSCDP---NLAVYAAYIQCLDPNLHRLPLFAIRDIQKGEQLSFSYYKSVTK 474 (502)
Q Consensus 416 ~~--~GNvaRFINHSC~P---N~~v~~V~v~~~D~~~pria~FAlRdI~aGEELT~DYg~~~~~ 474 (502)
+. ..||.||+|=+++. |+.+.. ....|.++|+|+|++||||.+.|+..+..
T Consensus 93 ~d~~~sNWmRYV~~Ar~~eeQNL~A~Q--------~~~~Ifyrt~r~I~p~eELlVWY~~e~~~ 148 (396)
T KOG2461|consen 93 TDEEHSNWMRYVNSARSEEEQNLLAFQ--------IGENIFYRTIRDIRPNEELLVWYGSEYAE 148 (396)
T ss_pred CChhhcceeeeecccCChhhhhHHHHh--------ccCceEEEecccCCCCCeEEEEeccchHh
Confidence 74 68999999999865 876642 34678899999999999999999988755
No 21
>PF01429 MBD: Methyl-CpG binding domain; InterPro: IPR001739 Methylation at CpG dinucleotide, the most common DNA modification in eukaryotes, has been correlated with gene silencing associated with various phenomena such as genomic imprinting, transposon and chromosome X inactivation, differentiation, and cancer. Effects of DNA methylation are mediated through proteins which bind to symmetrically methylated CpGs. Such proteins contain a specific domain of ~70 residues, the methyl-CpG-binding domain (MBD), which is linked to additional domains associated with chromatin, such as the bromodomain, the AT hook motif,the SET domain, or the PHD finger. MBD-containing proteins appear to act as structural proteins, which recruit a variety of histone deacetylase (HDAC) complexes and chromatin remodelling factors, leading to chromatin compaction and, consequently, to transcriptional repression. The MBD of MeCP2, MBD1, MBD2, MBD4 and BAZ2 mediates binding to DNA, in case of MeCP2, MBD1 and MBD2 preferentially to methylated CpG. In case of human MBD3 and SETDB1 the MBD has been shown to mediate protein-protein interactions [, ]. The MBD folds into an alpha/beta sandwich structure comprising a layer of twisted beta sheet, backed by another layer formed by the alpha1 helix and a hairpin loop at the C terminus. These layers are both amphipathic, with the alpha1 helix and the beta sheet lying parallel and the hydrophobic faces tightly packed against each other. The beta sheet is composed of two long inner strands (beta2 and beta3) sandwiched by two shorter outer strands (beta1 and beta4) [].; GO: 0003677 DNA binding, 0005634 nucleus; PDB: 2KY8_A 1UB1_A 1D9N_A 1IG4_A 1QK9_A 3C2I_A.
Probab=98.04 E-value=2.6e-06 Score=70.77 Aligned_cols=64 Identities=14% Similarity=0.105 Sum_probs=46.9
Q ss_pred ccCCCCcccccCccCCccccCCCCCcccCCCcceeeEEecCcccccccchhh-HHHHhhcc--cceeeeeeccc
Q psy7969 111 ASLNSPPIYDFGKKSPKRSLLGSPSIEPKRSTKLNLGTKLGCSKDVKNMKKE-DQLEAVNS--VQNVDVQEING 181 (502)
Q Consensus 111 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~-~~~~~~~~--~~~v~l~~~~~ 181 (502)
+++..|+-+||.|....|+. .+...+.+|.|.+|||+.+|+|+|| .||+..++ ..+++.|.|+.
T Consensus 5 ~~~~~~Lp~GW~re~~~R~~-------g~~~~~~dv~Y~sP~Gk~~RS~~eV~~yL~~~~~~~~l~~~~F~F~~ 71 (77)
T PF01429_consen 5 SPLDPPLPDGWKREVVVRKS-------GSSAGKKDVYYYSPCGKRFRSKKEVVRYLKENPSEHDLKPENFSFSK 71 (77)
T ss_dssp ECEBTTSTTT-EEEEEESSS-------STTTTSEEEEEEETTSEEESSHHHHHHHHTTSS---SS-CTTBBTTT
T ss_pred ccccCCCCCCCEEEEEEecC-------CCcCCceEEEEECCCCCEEeCHHHHHHHHHhCCCcccCCHhHCCCCC
Confidence 57889999999986655533 1224789999999999999999999 88888887 55666444433
No 22
>smart00508 PostSET Cysteine-rich motif following a subset of SET domains.
Probab=96.20 E-value=0.0025 Score=42.68 Aligned_cols=17 Identities=53% Similarity=1.162 Sum_probs=15.0
Q ss_pred CeEeecCCCCccccccC
Q psy7969 484 KVKCKCEAKNCRGYLNV 500 (502)
Q Consensus 484 ~~~C~CGs~~CRG~L~~ 500 (502)
.+.|+|||.+|||+|+.
T Consensus 2 ~~~C~CGs~~CRG~l~~ 18 (26)
T smart00508 2 KQPCLCGAPNCRGFLGX 18 (26)
T ss_pred CeeeeCCCccccceecc
Confidence 47999999999999964
No 23
>smart00570 AWS associated with SET domains. subdomain of PRESET
Probab=95.95 E-value=0.0032 Score=48.77 Aligned_cols=23 Identities=30% Similarity=0.843 Sum_probs=21.1
Q ss_pred eEecCCCCCCCCCCCCcccccCc
Q psy7969 315 IYECNKNCKCNASCPNRVIQLGT 337 (502)
Q Consensus 315 I~ECn~~C~C~~~C~NRvvQ~g~ 337 (502)
.+||++.|.|+..|.|+.+|+..
T Consensus 28 ~~EC~~~C~~G~~C~NqrFqk~~ 50 (51)
T smart00570 28 LIECSSDCPCGSYCSNQRFQKRQ 50 (51)
T ss_pred hhhcCCCCCCCcCccCcccccCc
Confidence 68999999999999999999864
No 24
>cd01396 MeCP2_MBD MeCP2, MBD1, MBD2, MBD3, and MBD4 are members of a protein family that share the methyl-CpG-binding domain (MBD). The MBD, consists of about 70 residues and is defined as the minimal region required for binding to methylated DNA by a methyl-CpG-binding protein which binds specifically to methylated DNA. The MBD can recognize a single symmetrically methylated CpG either as naked DNA or within chromatin. MeCP2, MBD1 and MBD2 (and likely MBD3) form complexes with histone deacetylase and are involved in histone deacetylase-dependent repression of transcription. MBD4 is an endonuclease that forms a complex with the DNA mismatch-repair protein MLH1.
Probab=94.85 E-value=0.018 Score=48.15 Aligned_cols=45 Identities=13% Similarity=0.051 Sum_probs=35.2
Q ss_pred cccccCccCCccccCCCCCcccCCCcceeeEEecCcccccccchhh-HHHHhhc
Q psy7969 117 PIYDFGKKSPKRSLLGSPSIEPKRSTKLNLGTKLGCSKDVKNMKKE-DQLEAVN 169 (502)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~-~~~~~~~ 169 (502)
+-.||.|..-.|+. | ...+..|.|.+|||+-+|++.|| .||++.+
T Consensus 7 lp~GW~r~~~~R~~-g-------s~~k~DvyY~sP~Gkk~RS~~ev~~yL~~~~ 52 (77)
T cd01396 7 LPPGWKRELVPRKS-G-------SAGKFDVYYISPTGKKFRSKVELARYLEKNG 52 (77)
T ss_pred CCCCCEEEEEEecC-C-------CCCcceEEEECCCCCEEECHHHHHHHHHhCC
Confidence 66899886655533 1 24688999999999999999999 7777764
No 25
>KOG2084|consensus
Probab=93.05 E-value=0.084 Score=55.94 Aligned_cols=43 Identities=35% Similarity=0.591 Sum_probs=33.7
Q ss_pred ccccccCCCceEEEEEEeecCCCeeEEEEEEcCCCCCCC-eEEEecCCCCCC
Q psy7969 424 FINHSCDPNLAVYAAYIQCLDPNLHRLPLFAIRDIQKGE-QLSFSYYKSVTK 474 (502)
Q Consensus 424 FINHSC~PN~~v~~V~v~~~D~~~pria~FAlRdI~aGE-ELT~DYg~~~~~ 474 (502)
++||||.||+.+ .+. .....+.+...+.+++ ||++.|....+.
T Consensus 208 ~~~hsC~pn~~~--~~~------~~~~~~~~~~~~~~~~~~l~~~y~~~~~~ 251 (482)
T KOG2084|consen 208 LFNHSCFPNISV--IFD------GRGLALLVPAGIDAGEEELTISYTDPLLS 251 (482)
T ss_pred hcccCCCCCeEE--EEC------CceeEEEeecccCCCCCEEEEeecccccC
Confidence 789999999983 232 3556677778888876 999999988776
No 26
>KOG1337|consensus
Probab=79.06 E-value=1.5 Score=47.93 Aligned_cols=42 Identities=26% Similarity=0.296 Sum_probs=32.3
Q ss_pred ccccccCCCceEEEEEEeecCCCeeEEEEEEcCCCCCCCeEEEecCCCC
Q psy7969 424 FINHSCDPNLAVYAAYIQCLDPNLHRLPLFAIRDIQKGEQLSFSYYKSV 472 (502)
Q Consensus 424 FINHSC~PN~~v~~V~v~~~D~~~pria~FAlRdI~aGEELT~DYg~~~ 472 (502)
+.||+|.+.. .... .....+.+.+.++|.+||||+++||...
T Consensus 239 ~~NH~~~~~~----~~~~---~~d~~~~l~~~~~v~~geevfi~YG~~~ 280 (472)
T KOG1337|consen 239 LLNHSPEVIK----AGYN---QEDEAVELVAERDVSAGEEVFINYGPKS 280 (472)
T ss_pred hhccCchhcc----cccc---CCCCcEEEEEeeeecCCCeEEEecCCCc
Confidence 6899999922 2222 2334889999999999999999999754
No 27
>KOG1081|consensus
Probab=54.80 E-value=4.5 Score=44.57 Aligned_cols=128 Identities=16% Similarity=-0.015 Sum_probs=77.3
Q ss_pred CCCCce---eeecCCCCCCCEEEEEeeEeeeHH--HHhhcc-----Cc-ceeEeccCCCCCcceeeccccCCccEEEecc
Q psy7969 348 NDCGWG---VQTLEDIPKGTYVTEYVGEILTYE--AASLRD-----NQ-TYLFNLDFNGSTSFVIDAYFNGSTSFVIDAC 416 (502)
Q Consensus 348 ~~kGwG---VfA~~dI~kGtfI~EY~GEVIt~~--Eae~r~-----~~-~YlfdLd~~~~~~~~~~~~~~~~~~~~IDA~ 416 (502)
+..+|+ .+|...+..|++|..++|+..-.. -..... .. .-+|... . . ......++.
T Consensus 121 ~~c~~~~~d~~~~~~~~~~~~vw~~vg~~~~~~c~vc~~~~~~~~~~~~~~~f~~~--~-------~----~~~~~~~~~ 187 (463)
T KOG1081|consen 121 EKCSKRCTDCRAFKKREVGDLVWSKVGEYPWWPCMVCHDPLLPKGMKHDHVNFFGC--Y-------A----WTHEKRVFP 187 (463)
T ss_pred cccccCCcceeeeccccceeEEeEEcCcccccccceecCcccchhhccccceeccc--h-------h----hHHHhhhhh
Confidence 345666 788889999999999999986544 111111 00 0111111 0 0 012233444
Q ss_pred ccCCcccccccccCCCceEEEEEEeecCCCeeEEEEEEcCCCCCCCe------EEEecCCCCCCCCCCCCCCCCeEeecC
Q psy7969 417 NFGNISHFINHSCDPNLAVYAAYIQCLDPNLHRLPLFAIRDIQKGEQ------LSFSYYKSVTKEPTRPGGSNKVKCKCE 490 (502)
Q Consensus 417 ~~GNvaRFINHSC~PN~~v~~V~v~~~D~~~pria~FAlRdI~aGEE------LT~DYg~~~~~~~~~~~~~~~~~C~CG 490 (502)
..|+..++++|++.|+-....+... ..+++..++.+.++-+.. ++-.|...-+ ...+.+.+.
T Consensus 188 ~~g~~~~~l~~~~~~~s~~~~~~~~----~~~r~~~~~~q~~~~~~~~e~k~~~~~~~~~~~~--------~~~~~~~~~ 255 (463)
T KOG1081|consen 188 YEGQSSKLIPHSKKPASTMSEKIKE----AKARFGKLKAQWEAGIKQKELKPEEYKRIKVVCP--------IGDQQIYSA 255 (463)
T ss_pred ccchHHHhhhhccccchhhhhhhhc----ccchhhhcccchhhccchhhcccccccccccccC--------cCcccccch
Confidence 4999999999999998776544443 568888888888877766 4444432222 123457777
Q ss_pred CCCccccccC
Q psy7969 491 AKNCRGYLNV 500 (502)
Q Consensus 491 s~~CRG~L~~ 500 (502)
+.+|..-++.
T Consensus 256 ~~~~~~k~~~ 265 (463)
T KOG1081|consen 256 AVSCIKKLLA 265 (463)
T ss_pred hhhhhhhccc
Confidence 7777665543
No 28
>PF08666 SAF: SAF domain; InterPro: IPR013974 This entry includes a range of different proteins, such as antifreeze proteins, flagellar FlgA proteins, and CpaB pilus proteins. ; PDB: 1C89_A 3NLA_A 3RDN_A 1C8A_A 3FRN_A 1WVO_A 3K3S_H 3G8R_B 1XUU_A 1XUZ_A ....
Probab=44.71 E-value=13 Score=28.50 Aligned_cols=17 Identities=29% Similarity=0.427 Sum_probs=12.3
Q ss_pred EEEEcCCCCCCCeEEEe
Q psy7969 451 PLFAIRDIQKGEQLSFS 467 (502)
Q Consensus 451 a~FAlRdI~aGEELT~D 467 (502)
+++|.|||++|+.|+-+
T Consensus 3 vvVA~~di~~G~~i~~~ 19 (63)
T PF08666_consen 3 VVVAARDIPAGTVITAE 19 (63)
T ss_dssp EEEESSTB-TT-BECTT
T ss_pred EEEEeCccCCCCEEccC
Confidence 47899999999999543
No 29
>KOG1338|consensus
Probab=41.89 E-value=17 Score=39.42 Aligned_cols=41 Identities=32% Similarity=0.437 Sum_probs=32.0
Q ss_pred Cccccccc---ccCCCceEEEEEEeecCCCeeEEEEEEcCCCCCCCeEEEecCC
Q psy7969 420 NISHFINH---SCDPNLAVYAAYIQCLDPNLHRLPLFAIRDIQKGEQLSFSYYK 470 (502)
Q Consensus 420 NvaRFINH---SC~PN~~v~~V~v~~~D~~~pria~FAlRdI~aGEELT~DYg~ 470 (502)
-++-|+|| +|..|+.+ ....+-+.|.|+|++|+|+.-.||-
T Consensus 217 p~ad~lNhd~~k~nanl~y----------~~NcL~mva~r~iekgdev~n~dg~ 260 (466)
T KOG1338|consen 217 PIADFLNHDGLKANANLRY----------EDNCLEMVADRNIEKGDEVDNSDGL 260 (466)
T ss_pred chhhhhccchhhcccceec----------cCcceeeeecCCCCCcccccccccc
Confidence 35679999 46777654 2356679999999999999999973
No 30
>PF00856 SET: SET domain; InterPro: IPR001214 The SET domain appears generally as one part of a larger multidomain protein, and recently there were described three structures of very different proteins with distinct domain compositions: Neurospora crassa DIM-5, a member of the Su(var) family of HKMTs which methylate histone H3 on lysine 9,human SET7 (also called SET9), which methylates H3 on lysine 4 and garden pea Rubisco LSMT, an enzyme that does not modify histones, but instead methylates lysine 14 in the flexible tail of the large subunit of the enzyme Rubisco. The SET domain itself turned out to be an uncommon structure. Although in all three studies, electron density maps revealed the location of the AdoMet or AdoHcy cofactor, the SET domain bears no similarity at all to the canonical/AdoMet-dependent methyltransferase fold. Strictly conserved in the C-terminal motif of the SET domain tyrosine could be involved in abstracting a proton from the protonated amino group of the substrate lysine, promoting its nucleophilic attack on the sulphonium methyl group of the AdoMet cofactor. In contrast to the AdoMet-dependent protein methyltranferases of the classical type, which tend to bind their polypeptide substrates on top of the cofactor, it is noted from the Rubisco LSMT structure that the AdoMet seems to bind in a separate cleft, suggesting how a polypeptide substrate could be subjected to multiple rounds of methylation without having to be released from the enzyme. In contrast, SET7/9 is able to add only a single methyl group to its substrate. It has been demonstrated that association of SET domain and myotubularin-related proteins modulates growth control []. The SET domain-containing Drosophila melanogaster (Fruit fly) protein, enhancer of zeste, has a function in segment determination and the mammalian homologue may be involved in the regulation of gene transcription and chromatin structure. Histone lysine methylation is part of the histone code that regulated chromatin function and epigenetic control of gene function. Histone lysine methyltransferases (HMTase) differ both in their substrate specificity for the various acceptor lysines as well as in their product specificity for the number of methyl groups (one, two, or three) they transfer. With just one exception [], the HMTases belong to SET family that can be classified according to the sequences surrounding the SET domain [, ]. Structural studies on the human SET7/9, a mono-methylase, have revealed the molecular basis for the specificity of the enzyme for the histone-target and the roles of the invariant residues in the SET domain in determining the methylation specificities []. The pre-SET domain, as found in the SUV39 SET family, contains nine invariant cysteine residues that are grouped into two segments separated by a region of variable length. These 9 cysteines coordinate 3 zinc ions to form to form a triangular cluster, where each of the zinc ions is coordinated by 4 four cysteines to give a tetrahedral configuration. The function of this domain is structural, holding together 2 long segments of random coils. The C-terminal region including the post-SET domain is disordered when not interacting with a histone tail and in the absence of zinc. The three conserved cysteines in the post-SET domain form a zinc-binding site when coupled to a fourth conserved cysteine in the knot-like structure close to the SET domain active site []. The structured post-SET region brings in the C-terminal residues that participate in S-adenosylmethine-binding and histone tail interactions. The three conserved cysteine residues are essential for HMTase activity, as replacement with serine abolishes HMTase activity [], []. ; GO: 0005515 protein binding; PDB: 3TG5_A 3S7F_A 3RIB_B 3TG4_A 3S7J_A 3S7D_A 3S7B_A 3H6L_A 3SMT_A 3K5K_A ....
Probab=31.37 E-value=28 Score=30.23 Aligned_cols=18 Identities=44% Similarity=0.636 Sum_probs=13.0
Q ss_pred EEEEEcCCCCCCCeEEEe
Q psy7969 450 LPLFAIRDIQKGEQLSFS 467 (502)
Q Consensus 450 ia~FAlRdI~aGEELT~D 467 (502)
.+|||+|||++||-|.+.
T Consensus 2 rGl~At~dI~~Ge~I~~p 19 (162)
T PF00856_consen 2 RGLFATRDIKAGEVILIP 19 (162)
T ss_dssp EEEEESS-B-TTEEEEEE
T ss_pred EEEEECccCCCCCEEEEE
Confidence 369999999999987553
No 31
>KOG2155|consensus
Probab=25.52 E-value=40 Score=37.24 Aligned_cols=57 Identities=18% Similarity=0.364 Sum_probs=41.6
Q ss_pred cEEEeccccCCcccccccccCCCceEEEEEEeecCCCeeEEEEEEcCCCCCCCeEEEecCCCCC
Q psy7969 410 SFVIDACNFGNISHFINHSCDPNLAVYAAYIQCLDPNLHRLPLFAIRDIQKGEQLSFSYYKSVT 473 (502)
Q Consensus 410 ~~~IDA~~~GNvaRFINHSC~PN~~v~~V~v~~~D~~~pria~FAlRdI~aGEELT~DYg~~~~ 473 (502)
-|++|- ++.-+.||-.||..+.+...- -..-..-.++-+|+...|||+|-|+.....
T Consensus 198 WYvMDe-----fGsrvrHsdePnf~~aPf~fm--Pq~vaYsimwp~k~~~tgeE~trDfasg~~ 254 (631)
T KOG2155|consen 198 WYVMDE-----FGSRVRHSDEPNFRIAPFMFM--PQNVAYSIMWPTKPVNTGEEITRDFASGVI 254 (631)
T ss_pred eEEHhh-----hhhhhccCCCCcceeeeheec--chhcceeEEeeccCCCCchHHHHHHhhcCC
Confidence 456663 334589999999988776543 123455668999999999999999876543
No 32
>smart00317 SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain. Putative methyl transferase, based on outlier plant homologues
Probab=20.44 E-value=86 Score=25.96 Aligned_cols=22 Identities=32% Similarity=0.267 Sum_probs=16.8
Q ss_pred eeEEEEEEcCCCCCCCeEEEecC
Q psy7969 447 LHRLPLFAIRDIQKGEQLSFSYY 469 (502)
Q Consensus 447 ~pria~FAlRdI~aGEELT~DYg 469 (502)
..-.++||.++|++|+ +.+.|.
T Consensus 9 ~~G~gl~a~~~i~~g~-~i~~~~ 30 (116)
T smart00317 9 GKGWGVRATEDIPKGE-FIGEYV 30 (116)
T ss_pred CCcEEEEECCccCCCC-EEEEEE
Confidence 3567899999999999 444553
No 33
>smart00858 SAF This domain family includes a range of different proteins. Such as antifreeze proteins and flagellar FlgA proteins, and CpaB pilus proteins.
Probab=20.14 E-value=67 Score=24.42 Aligned_cols=16 Identities=31% Similarity=0.501 Sum_probs=14.1
Q ss_pred EEEEcCCCCCCCeEEE
Q psy7969 451 PLFAIRDIQKGEQLSF 466 (502)
Q Consensus 451 a~FAlRdI~aGEELT~ 466 (502)
++.|.++|.+|+.|+-
T Consensus 3 v~va~~~i~~G~~i~~ 18 (64)
T smart00858 3 VVVAARDLPAGEVITA 18 (64)
T ss_pred EEEEeCccCCCCCcch
Confidence 4789999999999986
Done!