RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7969
(502 letters)
>2r3a_A Histone-lysine N-methyltransferase SUV39H2; histone H3-K9
methyltransferase 2, H3 lysine-9 specific 2, alternative
splicing, cell cycle; HET: SAM; 2.00A {Homo sapiens}
Length = 300
Score = 271 bits (695), Expect = 4e-88
Identities = 115/298 (38%), Positives = 161/298 (54%), Gaps = 29/298 (9%)
Query: 215 KRLIQMENLKRYEMEINVTTGNAVAPIYVINNVDLSCVPANFTHTNHNIPAEGVIVNEEP 274
K+ Q L+R++ E+N N I+V N VDL P++F + N PA G+ + E
Sbjct: 19 KKAKQRIALQRWQDELN-RRKNHKGMIFVENTVDLEGPPSDFYYINEYKPAPGISLVNEA 77
Query: 275 IIWCECVDNCRDSSYCCGQLNDSVTAYDENKRLRIGQGTPIYECNKNCKCNASCPNRVIQ 334
C C D CC + AY++N++++I GTPIYECN C+C CPNR++Q
Sbjct: 78 TFGCSCTDCFFQK--CCPAEAGVLLAYNKNQQIKIPPGTPIYECNSRCQCGPDCPNRIVQ 135
Query: 335 LGTKIKLGIYKTYNDCGWGVQTLEDIPKGTYVTEYVGEILTYEAASLRDNQ------TYL 388
GT+ L I++T N GWGV+TL I + ++V EYVGE++T E A R TYL
Sbjct: 136 KGTQYSLCIFRTSNGRGWGVKTLVKIKRMSFVMEYVGEVITSEEAERRGQFYDNKGITYL 195
Query: 389 FNLDFNGSTSFVIDAYFNGSTSFVIDACNFGNISHFINHSCDPNLAVYAAYIQCLDPNLH 448
F+LD+ F +DA +GN+SHF+NHSCDPNL V+ +I LD L
Sbjct: 196 FDLDYESD-------------EFTVDAARYGNVSHFVNHSCDPNLQVFNVFIDNLDTRLP 242
Query: 449 RLPLFAIRDIQKGEQLSFSY-------YKSVTKEPTRPGGSNKVKCKCEAKNCRGYLN 499
R+ LF+ R I GE+L+F Y S + + + + CKC A CRGYLN
Sbjct: 243 RIALFSTRTINAGEELTFDYQMKGSGDISSDSIDHSPAKKRVRTVCKCGAVTCRGYLN 300
>1mvh_A Cryptic LOCI regulator 4; lysine methyltransferase, CLR4,
SET-domain; 2.30A {Schizosaccharomyces pombe} SCOP:
b.85.7.1 PDB: 1mvx_A
Length = 299
Score = 251 bits (643), Expect = 2e-80
Identities = 94/281 (33%), Positives = 138/281 (49%), Gaps = 34/281 (12%)
Query: 240 PIYVINNVDL-SCVPANFTHTNHNIPAEGVIVNEEPIIW-CECVD----NCRDSSYC-CG 292
+ ++N VD C +F + +GVI + C C + + S C C
Sbjct: 29 EVTLVNEVDDEPCPSLDFQFISQYRLTQGVIPPDPNFQSGCNCSSLGGCDLNNPSRCECL 88
Query: 293 QL--NDSVTAYDENKRLRIGQGTPIYECNKNCKCNASCPNRVIQLGTKIKLGIYKTYNDC 350
+ AYD R+R G IYECN C C+ CPNRV+Q G + L I+KT +
Sbjct: 89 DDLDEPTHFAYDAQGRVRADTGAVIYECNSFCSCSMECPNRVVQRGRTLPLEIFKT-KEK 147
Query: 351 GWGVQTLEDIPKGTYVTEYVGEILTYEAASLRDNQ------TYLFNLDFNGSTSFVIDAY 404
GWGV++L P GT++T Y+GE++T A+ RD TYLF+LD
Sbjct: 148 GWGVRSLRFAPAGTFITCYLGEVITSAEAAKRDKNYDDDGITYLFDLDMFD--------- 198
Query: 405 FNGSTSFVIDACNFGNISHFINHSCDPNLAVYAAYIQCLDPNLHRLPLFAIRDIQKGEQL 464
++ + +DA N+G++S F NHSC PN+A+Y+A ++ L FAI+DIQ E+L
Sbjct: 199 --DASEYTVDAQNYGDVSRFFNHSCSPNIAIYSAVRNHGFRTIYDLAFFAIKDIQPLEEL 256
Query: 465 SFSY-------YKSVTKEPTRPGGSNKVKCKCEAKNCRGYL 498
+F Y K + +CKC + NCRG+L
Sbjct: 257 TFDYAGAKDFSPVQSQKSQQNRISKLRRQCKCGSANCRGWL 297
>1ml9_A Histone H3 methyltransferase DIM-5; adoMet-dependent
methyltransferase histone H3 lysine- 9 methylation;
1.98A {Neurospora crassa} SCOP: b.85.7.1 PDB: 1peg_A*
Length = 302
Score = 244 bits (624), Expect = 1e-77
Identities = 88/294 (29%), Positives = 129/294 (43%), Gaps = 38/294 (12%)
Query: 240 PIYVINNVDLSCVPANFTHTNHNIPAEGVIVNEEPIIW-CECVDNCR-DSSYC-CGQLND 296
PI ++N D + + NF +H+I + V V ++ C C + S C C
Sbjct: 11 PISIVNREDDAFLNPNFRFIDHSIIGKNVPVADQSFRVGCSCASDEECMYSTCQCLDEMA 70
Query: 297 SVTAYDENKRLRIGQ--------------------GTPIYECNKNCKCNASCPNRVIQLG 336
+ + + R + PIYEC++ C C+ CPNRV++ G
Sbjct: 71 PDSDEEADPYTRKKRFAYYSQGAKKGLLRDRVLQSQEPIYECHQGCACSKDCPNRVVERG 130
Query: 337 TKIKLGIYKTYNDCGWGVQTLEDIPKGTYVTEYVGEILTYEAASLRDNQ--------TYL 388
+ L I++T D GWGV+ +I +G +V Y+GEI+T E A R + YL
Sbjct: 131 RTVPLQIFRT-KDRGWGVKCPVNIKRGQFVDRYLGEIITSEEADRRRAESTIARRKDVYL 189
Query: 389 FNLDFNGSTSFVIDAYFNGSTSFVIDACNFGNISHFINHSCDPNLAVYAAYIQCLDPNLH 448
F LD + +D + FINHSCDPN+A++A D ++H
Sbjct: 190 FALDKFSDPDSLDPLLAG--QPLEVDGEYMSGPTRFINHSCDPNMAIFARVGDHADKHIH 247
Query: 449 RLPLFAIRDIQKGEQLSFSY----YKSVTKEPTRPGGSNKVKCKCEAKNCRGYL 498
L LFAI+DI KG +L+F Y + S KC C CRGYL
Sbjct: 248 DLALFAIKDIPKGTELTFDYVNGLTGLESDAHDPSKISEMTKCLCGTAKCRGYL 301
>3hna_A Histone-lysine N-methyltransferase, H3 lysine-9 specific 5; EHMT1,
structural genomics, SGC, structural genomics
consortium, alternative splicing, ANK repeat; HET: MLZ
SAH; 1.50A {Homo sapiens} PDB: 2rfi_A* 2igq_A* 3mo0_A*
3mo2_A* 3mo5_A* 3sw9_A* 3swc_A* 3fpd_A* 3k5k_A* 3nni_A*
3rjw_A* 2o8j_A*
Length = 287
Score = 238 bits (609), Expect = 2e-75
Identities = 90/263 (34%), Positives = 136/263 (51%), Gaps = 25/263 (9%)
Query: 240 PIYVINNVDLSCVPANFTHTNHNIPAEGVIVN--EEPIIWCECVDNCRDSSYCCGQLNDS 297
PI +N VD P+N+ + + N + ++ + +C C+D+C S+ CGQL+
Sbjct: 43 PIPCVNAVDSEPCPSNYKYVSQNCVTSPMNIDRNITHLQYCVCIDDCSSSNCMCGQLSMR 102
Query: 298 VTAYDENKRLRIGQG----TPIYECNKNCKCNASCPNRVIQLGTKIKLGIYKTYNDCGWG 353
YD++ RL I+ECN C C +C NRV+Q G + +L +Y+T D GWG
Sbjct: 103 C-WYDKDGRLLPEFNMAEPPLIFECNHACSCWRNCRNRVVQNGLRARLQLYRT-RDMGWG 160
Query: 354 VQTLEDIPKGTYVTEYVGEILTYEAASLRDNQTYLFNLDFNGSTSFVIDAYFNGSTSFVI 413
V++L+DIP GT+V EYVGE+++ A +R+ +YLF+LD + IDA F
Sbjct: 161 VRSLQDIPPGTFVCEYVGELISDSEADVREEDSYLFDLDNKDGEVYCIDARF-------- 212
Query: 414 DACNFGNISHFINHSCDPNLAVYAAYIQCLDPNLHRLPLFAIRDIQKGEQLSFSYYKSVT 473
+GN+S FINH C+PNL ++ D R+ F+ R I+ GEQL F Y +
Sbjct: 213 ----YGNVSRFINHHCEPNLVPVRVFMAHQDLRFPRIAFFSTRLIEAGEQLGFDYGERFW 268
Query: 474 KEPTRPGGSNKVKCKCEAKNCRG 496
C+C + CR
Sbjct: 269 DIK-----GKLFSCRCGSPKCRH 286
>3bo5_A Histone-lysine N-methyltransferase setmar; SET domain, chromati
regulator, DNA damage, DNA repair, DNA-binding, nucleus,
ST genomics; HET: SAH; 1.59A {Homo sapiens}
Length = 290
Score = 237 bits (607), Expect = 3e-75
Identities = 79/275 (28%), Positives = 123/275 (44%), Gaps = 35/275 (12%)
Query: 244 INNVDLSCVPANFTHTNHNIPAEGVIVN--EEPIIWCECVDNCRDSSYC-CGQLNDSVTA 300
+ PA F +T ++ G ++ + C CV C C + ++
Sbjct: 26 VGAWPPGAAPAPFQYTPDHVVGPGADIDPTQITFPGCICVKTPCLPGTCSCLRHGEN--- 82
Query: 301 YDENKRLR-----IGQGTPIYECNKNCKCNASCPNRVIQLGTKIKLGIYKTYNDCGWGVQ 355
YD+N LR P++ECN C+C+ C NRV+Q G + ++KT + GWG++
Sbjct: 83 YDDNSCLRDIGSGGKYAEPVFECNVLCRCSDHCRNRVVQKGLQFHFQVFKT-HKKGWGLR 141
Query: 356 TLEDIPKGTYVTEYVGEILTYEAASLRDNQ------TYLFNLDFNGSTSFVIDAYFNGST 409
TLE IPKG +V EY GE+L + R + Y+ + + V++
Sbjct: 142 TLEFIPKGRFVCEYAGEVLGFSEVQRRIHLQTKSDSNYIIAIREHVYNGQVME------- 194
Query: 410 SFVIDACNFGNISHFINHSCDPNLAVYAAYIQCLDPNLHRLPLFAIRDIQKGEQLSFSY- 468
+D GNI F+NHSC+PNL + I D + +L LFA +DI E+LS+ Y
Sbjct: 195 -TFVDPTYIGNIGRFLNHSCEPNLLMIPVRI---DSMVPKLALFAAKDIVPEEELSYDYS 250
Query: 469 -----YKSVTKEPTRPGGSNKVKCKCEAKNCRGYL 498
+ G + C C AK+C +L
Sbjct: 251 GRYLNLTVSASKERLDHGKLRKPCYCGAKSCTAFL 285
>3ope_A Probable histone-lysine N-methyltransferase ASH1L; SET, nucleus;
HET: SAM; 2.90A {Homo sapiens}
Length = 222
Score = 202 bits (515), Expect = 2e-62
Identities = 59/256 (23%), Positives = 102/256 (39%), Gaps = 54/256 (21%)
Query: 254 ANFTHTNHNIPAEGVIVNEEPIIWCECVDNCRDSSYCCGQ--LNDSVTAYDENKRLRIGQ 311
++ N+ + ++ C C D+ C LN R+
Sbjct: 1 GSYKKIRSNVYVDVKPLSGYEATTCNCKKPDDDTRKGCVDDCLN----------RM---- 46
Query: 312 GTPIYECN-KNCKCNASCPNRVIQLGTKIK-LGIYKTYNDCGWGVQTLEDIPKGTYVTEY 369
EC+ C C C N+ IQ ++ L ++ + GWG++T E + G ++ EY
Sbjct: 47 --IFAECSPNTCPCGEQCCNQRIQRHEWVQCLERFRA-EEKGWGIRTKEPLKAGQFIIEY 103
Query: 370 VGEILTYEAASLRDNQ-------TYLFNLDFNGSTSFVIDAYFNGSTSFVIDACNFGNIS 422
+GE+++ + R + Y NLD VID+ GN +
Sbjct: 104 LGEVVSEQEFRNRMIEQYHNHSDHYCLNLDSG----------------MVIDSYRMGNEA 147
Query: 423 HFINHSCDPNLAVYAAYIQCLDPNLHRLPLFAIRDIQKGEQLSFSYYKSVTKEPTRPGGS 482
FINHSCDPN + + ++R+ L+A++D+ G +L++ Y
Sbjct: 148 RFINHSCDPNCEMQ----KWSVNGVYRIGLYALKDMPAGTELTYDY------NFHSFNVE 197
Query: 483 NKVKCKCEAKNCRGYL 498
+ CKC + CRG +
Sbjct: 198 KQQLCKCGFEKCRGII 213
>3h6l_A Histone-lysine N-methyltransferase SETD2; SET domain-containing
protein 2, S-adenos methionine, structural genomics,
structural genomics consor SGC; HET: SAM; 1.99A {Homo
sapiens}
Length = 278
Score = 202 bits (516), Expect = 9e-62
Identities = 64/265 (24%), Positives = 95/265 (35%), Gaps = 32/265 (12%)
Query: 240 PIYVINNVDLSCVPANFTHTNHNIPAEGVIVN--EEPIIWCECVDNCRDSSYCCGQLNDS 297
P +P F N+ N I +C C S +
Sbjct: 24 PQRWKECAKQGKMPCYFDLIEENVYLTERKKNKSHRDIKRMQC--ECTPLSKDERAQGEI 81
Query: 298 VTAYDENKRLRIGQGTPIYECNKNCKCNASCPNRVIQLGTKIKLGIYKTYNDCGWGVQTL 357
D RL + EC+ C C NR Q + + T GWG++
Sbjct: 82 ACGEDCLNRL------LMIECSSRCPNGDYCSNRRFQRKQHADVEVILT-EKKGWGLRAA 134
Query: 358 EDIPKGTYVTEYVGEILTYEAASLRDNQTYLFNLDFNGSTSFVIDAYFNGSTSFVIDACN 417
+D+P T+V EY GE+L ++ R + N + + +IDA
Sbjct: 135 KDLPSNTFVLEYCGEVLDHKEFKARVKE-----YARNKNIHYYF---MALKNDEIIDATQ 186
Query: 418 FGNISHFINHSCDPNLAVYAAYIQCLDPNLHRLPLFAIRDIQKGEQLSFSY-YKSVTKEP 476
GN S F+NHSC+PN + R+ F + + G +L+F Y ++
Sbjct: 187 KGNCSRFMNHSCEPNCETQKWTV----NGQLRVGFFTTKLVPSGSELTFDYQFQRY---- 238
Query: 477 TRPGGSNKVKCKCEAKNCRGYLNVE 501
G KC C + NCRGYL E
Sbjct: 239 ----GKEAQKCFCGSANCRGYLGGE 259
>3ooi_A Histone-lysine N-methyltransferase, H3 lysine-36 lysine-20
specific; SET domain, S-adenosyl-L methionine; HET: SAM;
1.75A {Homo sapiens}
Length = 232
Score = 180 bits (459), Expect = 5e-54
Identities = 70/259 (27%), Positives = 106/259 (40%), Gaps = 57/259 (22%)
Query: 253 PANFTHTNHNIPAEGVIV---NEEPIIWCECVDNCRDSSYCCGQLNDSVTAYDENKRLRI 309
P + H N P V + + I C C + CG ++ + N+ L
Sbjct: 17 PPPYKHIKVNRPIGRVQIFTADLSEIPRCNCKATDEN---PCGIDSECI-----NRML-- 66
Query: 310 GQGTPIYECN-KNCKCNASCPNRVIQLGTKIKLGIYKTYNDCGWGVQTLEDIPKGTYVTE 368
+YEC+ C C N+ ++ I++T GWG++T DI KG +V E
Sbjct: 67 -----LYECHPTVCPAGGRCQNQCFSKRQYPEVEIFRT-LQRGWGLRTKTDIKKGEFVNE 120
Query: 369 YVGEILTYEAASLRDNQ--------TYLFNLDFNGSTSFVIDAYFNGSTSFVIDACNFGN 420
YVGE++ E R Y+ LD + +IDA GN
Sbjct: 121 YVGELIDEEECRARIRYAQEHDITNFYMLTLDKD----------------RIIDAGPKGN 164
Query: 421 ISHFINHSCDPNLAVYAAYIQCLDPNLHRLPLFAIRDIQKGEQLSFSY-YKSVTKEPTRP 479
+ F+NH C PN + R+ LFA+ DI+ G +L+F+Y + +
Sbjct: 165 YARFMNHCCQPNCETQ----KWSVNGDTRVGLFALSDIKAGTELTFNYNLECL------- 213
Query: 480 GGSNKVKCKCEAKNCRGYL 498
G+ K CKC A NC G+L
Sbjct: 214 -GNGKTVCKCGAPNCSGFL 231
>2w5y_A Histone-lysine N-methyltransferase HRX; transcription regulation,
chromosomal rearrangement, protein lysine
methyltransferase, proto-oncogene; HET: SAH; 2.00A {Homo
sapiens} PDB: 2w5z_A*
Length = 192
Score = 143 bits (362), Expect = 2e-40
Identities = 50/194 (25%), Positives = 81/194 (41%), Gaps = 39/194 (20%)
Query: 317 ECNKNCKCNASC---PNRVIQLGTKIKLGIYKTYNDCGWGVQTLEDIPKGTYVTEYVGEI 373
+ + R ++ +K +G+Y++ G G+ +I G V EY G +
Sbjct: 27 KSARRATSMDLPMPMRFRHLKKTSKEAVGVYRS-PIHGRGLFCKRNIDAGEMVIEYAGNV 85
Query: 374 LTYEAASLR-------DNQTYLFNLDFNGSTSFVIDAYFNGSTSFVIDACNFGNISHFIN 426
+ R Y+F +D S V+DA GN + FIN
Sbjct: 86 IRSIQTDKREKYYDSKGIGCYMFRID----------------DSEVVDATMHGNAARFIN 129
Query: 427 HSCDPNLAVYAAYIQCLDPN-LHRLPLFAIRDIQKGEQLSFSYYKSVTKEPTRPGGSNKV 485
HSC+PN Y + ++ + + +FA+R I +GE+L++ Y SNK+
Sbjct: 130 HSCEPN-----CYSRVINIDGQKHIVIFAMRKIYRGEELTYDYKFP------IEDASNKL 178
Query: 486 KCKCEAKNCRGYLN 499
C C AK CR +LN
Sbjct: 179 PCNCGAKKCRKFLN 192
>3f9x_A Histone-lysine N-methyltransferase SETD8; methyltransferase, SET,
lysine, alternative splicing, cell cycle, cell division,
chromatin regulator, chromosomal protein, coiled coil;
HET: MLY SAH; 1.25A {Homo sapiens} PDB: 3f9w_A* 3f9y_A*
3f9z_A* 1zkk_A* 2bqz_A*
Length = 166
Score = 134 bits (339), Expect = 2e-37
Identities = 37/159 (23%), Positives = 57/159 (35%), Gaps = 24/159 (15%)
Query: 318 CNKNCKCNAS-CPNRVIQLGTKIKLGIYKTYNDCGWGVQTLEDIPKGTYVTEYVGEILTY 376
+ + +I+ G + + I + G GV + +G +V EY G+++
Sbjct: 8 SKAELQSEERKRIDELIESGKEEGMKIDLI-DGKGRGVIATKQFSRGDFVVEYHGDLIEI 66
Query: 377 EAASLR------DNQTYLFNLDFNGSTSFVIDAYFNGSTSFVIDACNFGN-ISHFINHSC 429
A R D T + F S ++ +DA N + INHS
Sbjct: 67 TDAKKREALYAQDPSTGCYMYYF-----------QYLSKTYCVDATRETNRLGRLINHSK 115
Query: 430 DPNLAVYAAYIQCLDPNLHRLPLFAIRDIQKGEQLSFSY 468
N I + L L A RDI GE+L F Y
Sbjct: 116 CGNCQTKLHDID----GVPHLILIASRDIAAGEELLFDY 150
>2f69_A Histone-lysine N-methyltransferase, H3 lysine-4 specific SET7; SET
domain, protein lysine methyltransferase, enzyme-
peptide-adohcy complex; HET: MLZ SAH; 1.30A {Homo
sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 3m53_A* 3m55_A*
3m54_A* 3m56_A* 3m58_A* 3m57_A* 3m59_A* 3m5a_A* 1xqh_A*
4e47_A* 1n6a_A* 1o9s_A* 3cbp_A* 3cbm_A* 3cbo_A* 3os5_A*
Length = 261
Score = 114 bits (285), Expect = 7e-29
Identities = 32/188 (17%), Positives = 65/188 (34%), Gaps = 16/188 (8%)
Query: 285 RDSSYCCGQLNDSVTAYDENKRLRIGQGTPIYECNK-NCKCNASCPNRVIQLGTKIKLGI 343
D G+L ++ + + G +Y +K C ++ ++
Sbjct: 55 IDGEMIEGKLATLMSTEEGRPHFELMPGNSVYHFDKSTSSCISTNALLPDPYESERVYVA 114
Query: 344 YKTYNDCGWGVQTLEDIPKGTYVTEYVGEILTYEAASLRD--NQTYLFNLDFNGSTSFVI 401
+ G G+ + + T ++ Y G +T++ RD +LD VI
Sbjct: 115 ESLISSAGEGLFSKVAVGPNTVMSFYNGVRITHQEVDSRDWALNGNTLSLDEE----TVI 170
Query: 402 DAYFNGSTSFVIDACNFGNISHFINHSCDPNLAVYAAYIQCLDPNL-HRLPLFAIRDIQK 460
D + + ++ H NHS PN Y + P + +R ++
Sbjct: 171 DVPEPYNH----VSKYCASLGHKANHSFTPN----CIYDMFVHPRFGPIKCIRTLRAVEA 222
Query: 461 GEQLSFSY 468
E+L+ +Y
Sbjct: 223 DEELTVAY 230
>1n3j_A A612L, histone H3 lysine methyltransferase; beta barrel, homodimer;
NMR {Paramecium bursaria chlorella virus 1} SCOP:
b.85.7.2 PDB: 2g46_A* 3kma_A 3kmj_A 3kmt_A*
Length = 119
Score = 90.8 bits (226), Expect = 3e-22
Identities = 29/131 (22%), Positives = 46/131 (35%), Gaps = 28/131 (21%)
Query: 338 KIKLGIYKTYNDCGWGVQTLEDIPKGTYVTEYVGEILTYEAASLRDNQTYLFNLDFNGST 397
++ + K+ G+GV + KG V E + + + YLF+
Sbjct: 3 NDRVIVKKS-PLGGYGVFARKSFEKGELVEECLCIVRHNDDWGTALE-DYLFSRK----- 55
Query: 398 SFVIDAYFNGSTSFVIDACNFGNISHFINHSCDPNLAVYAAYIQCLDPNLHRLPLFAIRD 457
+ A G NHS DPN L L R+ +F I+
Sbjct: 56 --------------NMSAMALGF-GAIFNHSKDPNARHE------LTAGLKRMRIFTIKP 94
Query: 458 IQKGEQLSFSY 468
I GE+++ SY
Sbjct: 95 IAIGEEITISY 105
>3s8p_A Histone-lysine N-methyltransferase SUV420H1; SET domain, histone
methyltransferase, transcription regulat histone lysine,
SAM, methylation, nucleus; HET: MSE SAM; 1.85A {Homo
sapiens}
Length = 273
Score = 82.1 bits (202), Expect = 1e-17
Identities = 28/153 (18%), Positives = 50/153 (32%), Gaps = 27/153 (17%)
Query: 344 YKTYNDCGWGVQTLEDIPKGTYVTEYVGEILTYEAASLRDNQTYLFNLDFNGSTSFVIDA 403
Y + G + ++ + + VG I + L + + +
Sbjct: 141 YSS-EQNGAKIVATKEWKRNDKIELLVGCIAELSEI---EENMLLRHGEND--------- 187
Query: 404 YFNGSTSFVIDACNFGNISHFINHSCDPNLAVYAAYIQCLDPNLHRLPLFAIRDIQKGEQ 463
+ ++ A + + FINH C PN + + A+RDI+ GE+
Sbjct: 188 FSVMYSTRKNCAQLWLGPAAFINHDCRPNCKF-------VSTGRDTACVKALRDIEPGEE 240
Query: 464 LSFSYYKSVTKEPTRPGGSNKVKCKCEAKNCRG 496
+S Y E N C+C RG
Sbjct: 241 ISCYYGDGFFGE-------NNEFCECYTCERRG 266
>3rq4_A Histone-lysine N-methyltransferase SUV420H2; suppressor,
variegation 4-20 homolog 2, structural genomics,
structural genomics consortium, SGC; HET: SAM; 1.80A
{Homo sapiens}
Length = 247
Score = 76.2 bits (187), Expect = 8e-16
Identities = 30/228 (13%), Positives = 66/228 (28%), Gaps = 40/228 (17%)
Query: 275 IIWCECVDNCRDSSYCCGQLNDSVTAYDENKRLRIGQGTPIYECNKNCKCNASCPNRVIQ 334
+ +++Y L Y +++ R K + R
Sbjct: 50 ALETFLRQRDLEAAYRALTLGGWTARYFQSRGPR---------QEAALKTHVYRYLRAFL 100
Query: 335 LGTKIKLGIYKTY--NDCGWGVQTLEDIPKGTYVTEYVGEILTYEAASLRDNQTYLFNLD 392
+ + Y G + + K + VG I ++ L +
Sbjct: 101 PESGFTILPCTRYSMETNGAKIVSTRAWKKNEKLELLVGCIAELR----EADEGLLRAGE 156
Query: 393 FNGSTSFVIDAYFNGSTSFVIDACNFGNISHFINHSCDPNLAVYAAYIQCLDPNLHRLPL 452
+ + ++ A + + FINH C PN + + + + +
Sbjct: 157 ND---------FSIMYSTRKRSAQLWLGPAAFINHDCKPNC-------KFVPADGNAACV 200
Query: 453 FAIRDIQKGEQLSFSYYKSVTKEPTRPGGSNKVKCKCEA--KNCRGYL 498
+RDI+ G++++ Y + G C+C + G
Sbjct: 201 KVLRDIEPGDEVTCFYGEG-------FFGEKNEHCECHTCERKGEGAF 241
>3db5_A PR domain zinc finger protein 4; methyltransferase, PRDM4,
structural genomics, structural GE consortium, SGC,
DNA-binding, metal-binding, nucleus; 2.15A {Homo
sapiens}
Length = 151
Score = 70.3 bits (172), Expect = 1e-14
Identities = 23/133 (17%), Positives = 40/133 (30%), Gaps = 23/133 (17%)
Query: 341 LGIYKTYNDCGWGVQTLEDIPKGTYVTEYVGEILTYEAASLRD--NQTYLFNLDFNGSTS 398
L + ++ GV T E IP T +G+ + +++ + NG
Sbjct: 25 LVLRQSIVGAEVGVWTGETIPVRTCFGPLIGQQSHSMEVAEWTDKAVNHIWKIYHNGVLE 84
Query: 399 FVIDAYFNGSTSFVIDACNFGNISHFINHSCDP---NLAVYAAYIQCLDPNLHRLPLFAI 455
F I N F+ + + NL Y ++
Sbjct: 85 FCIITTDENE----------CNWMMFVRKARNREEQNLVAYPHD--------GKIFFCTS 126
Query: 456 RDIQKGEQLSFSY 468
+DI +L F Y
Sbjct: 127 QDIPPENELLFYY 139
>3ep0_A PR domain zinc finger protein 12; PR domain-containing protein 12,
structural genomics, structural genomics consortium,
SGC, DNA-binding; 2.10A {Homo sapiens}
Length = 170
Score = 66.3 bits (161), Expect = 5e-13
Identities = 25/148 (16%), Positives = 47/148 (31%), Gaps = 27/148 (18%)
Query: 349 DCGWGVQTLEDIPKGTYVTEYVGEILTYEAASLRDNQTYLFNLDFNGSTSFVIDAYFNGS 408
G G+ + I GT + + G ++ E + N ++ + +G+
Sbjct: 38 GEGLGIFSKTWIKAGTEMGPFTGRVIAPEHVDICKNNNLMWEVF-----------NEDGT 86
Query: 409 TSFVIDACN--FGNISHFINHSCDP---NLAVYAAYIQCLDPNLHRLPLFAIRDIQKGEQ 463
+ IDA + +I + + NL V + AI I ++
Sbjct: 87 VRYFIDASQEDHRSWMTYIKCARNEQEQNLEVVQIG--------TSIFYKAIEMIPPDQE 138
Query: 464 LSFSY---YKSVTKEPTRPGGSNKVKCK 488
L Y + + P PG K
Sbjct: 139 LLVWYGNSHNTFLGIPGVPGLEEDQKKN 166
>3dal_A PR domain zinc finger protein 1; methyltransferase, PRDM1,
structural genomics, structural genomics consortium,
SGC, DNA-binding, metal-binding; 1.65A {Homo sapiens}
Length = 196
Score = 66.3 bits (161), Expect = 7e-13
Identities = 27/124 (21%), Positives = 43/124 (34%), Gaps = 21/124 (16%)
Query: 348 NDCGWGVQTLEDIPKGTYVTEYVGEILTYEAASLRDNQTYLFNLDFNGSTSFVIDAYFNG 407
++ GV + E IPKGT +GEI T + N+ Y + + G ID
Sbjct: 68 SEEVIGVMSKEYIPKGTRFGPLIGEIYTNDTVPKNANRKYFWRIYSRGELHHFIDG---- 123
Query: 408 STSFVIDACNFGNISHFINHSCDP---NLAVYAAYIQCLDPNLHRLPLFAIRDIQKGEQL 464
N ++N + P NLA + + I+ I ++L
Sbjct: 124 ------FNEEKSNWMRYVNPAHSPREQNLAACQNG--------MNIYFYTIKPIPANQEL 169
Query: 465 SFSY 468
Y
Sbjct: 170 LVWY 173
>2qpw_A PR domain zinc finger protein 2; methyltransferase, activator,
alternative initiation, alternative splicing,
DNA-binding, metal-binding, nucleus; 1.79A {Homo
sapiens} PDB: 2jv0_A*
Length = 149
Score = 62.3 bits (151), Expect = 6e-12
Identities = 26/154 (16%), Positives = 47/154 (30%), Gaps = 20/154 (12%)
Query: 323 KCNASCPNRVIQLGTKIKLGIYKT-YNDCGWGVQTLEDIPKGTYVTEYVGEILTYEAASL 381
+ A P V G ++ ++ + + GV + I KG +VG+
Sbjct: 14 ETLAEVPEHV-LRGLPEEVRLFPSAVDKTRIGVWATKPILKGKKFGPFVGDKKKRSQV-- 70
Query: 382 RDNQTYLFNLDFNGSTSFVIDAYFNGSTSFVIDACNFGNISHFINHSCDPNLAVYAAYIQ 441
N Y++ + + IDA GN ++N +C
Sbjct: 71 -KNNVYMWEVYYPNLGWMCIDATDP----------EKGNWLRYVNWACSGEEQNLFPLEI 119
Query: 442 CLDPNLHRLPLFAIRDIQKGEQLSFSYYKSVTKE 475
+ ++ I GE+L Y E
Sbjct: 120 N-----RAIYYKTLKPIAPGEELLVWYNGEDNPE 148
>3ihx_A PR domain zinc finger protein 10; PRDM10, methyltransferase,
structural genomics, structural G consortium, SGC,
DNA-binding, metal-binding, nucleus; 2.50A {Homo
sapiens}
Length = 152
Score = 55.4 bits (133), Expect = 2e-09
Identities = 19/123 (15%), Positives = 36/123 (29%), Gaps = 20/123 (16%)
Query: 351 GWGVQTLEDIPKGTYVTEYVGEILTYEAASLRDNQTYLFNLDFNGSTSFVIDAYFNGSTS 410
GV + IPK T G ++ D +L G +
Sbjct: 31 LGGVFSKRRIPKRTQFGPVEGPLVRGSELK--DCYIHLKVSLDKGDRKE-----RDLHED 83
Query: 411 FVIDACN--FGNISHFINHSCDP---NLAVYAAYIQCLDPNLHRLPLFAIRDIQKGEQLS 465
+ + N F+ + + NL Y H + I++++ ++L
Sbjct: 84 LWFELSDETLCNWMMFVRPAQNHLEQNLVAYQYG--------HHVYYTTIKNVEPKQELK 135
Query: 466 FSY 468
Y
Sbjct: 136 VWY 138
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90,
transferase-transferase inhibitor; HET: SFG; 1.80A {Mus
musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A*
3tg4_A* 3tg5_A* 3rib_A*
Length = 433
Score = 54.9 bits (131), Expect = 3e-08
Identities = 28/240 (11%), Positives = 66/240 (27%), Gaps = 50/240 (20%)
Query: 258 HTNHNIPAEGVIVNEEPIIWCECVDNCRDSSYCCGQLNDSVTAYDENKRLRIGQGTPIYE 317
++ + V CC + ++ Y
Sbjct: 22 RALRPFHVGDLLFSCPAYACVLTVGERGHHCECCFARKEGLSKCG-------RCKQAFY- 73
Query: 318 CNKNCKCNAS---------------------CPNRVIQLGTKIKLGIYKTYNDCGWGVQT 356
C+ C+ ++ K K+ +T ++ V+
Sbjct: 74 CDVECQKEDWPLHKLECSSMVVLGENWNPSETVRLTARILAKQKIHPERTPSEKLLAVRE 133
Query: 357 LEDIPKGTYVTEYVGEILTYEAASLRDNQTYLFNLDFNGSTSFVIDAYFNGST-SFVIDA 415
E + +++ + A+L + S ++ + + F I+
Sbjct: 134 FESHLDKLDNEKK--DLIQSDIAALHQ---FYSKYLEFPDHSSLVVLFAQVNCNGFTIED 188
Query: 416 CNFGNISH-------FINHSCDPNLAVYAAYIQCLDPNLHRLPLFAIRDIQKGEQLSFSY 468
++ +NHSC PN+ V + A+++I G+++ SY
Sbjct: 189 EELSHLGSAIFPDVALMNHSCCPNVIVT--------YKGTLAEVRAVQEIHPGDEVFTSY 240
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 54.9 bits (131), Expect = 5e-08
Identities = 76/487 (15%), Positives = 138/487 (28%), Gaps = 119/487 (24%)
Query: 18 SDVEQDTDVQEVEQKPDLNQVE-IKL---EEPEVKITSIKSEYPTITNISPEYTPRTRDD 73
DV VQ K D ++ + L PE + ++ I P +T R
Sbjct: 168 LDVCLSYKVQ---CKMD-FKIFWLNLKNCNSPETVLEMLQKLL---YQIDPNWTSR---- 216
Query: 74 KTDREQASSNFFKPPRTRDDKTDREQASSNFFKKREWA-SL------NSPPIYD-FGKKS 125
S + K + + L + ++ F
Sbjct: 217 -------SDHSSNIKLRIHSIQAE---LRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSC 266
Query: 126 PKRSLLGSPSIEPKRSTKLNLGTKLGCSKDVKNMKKEDQLEAVNSVQNVDVQEINGHIRN 185
+ LL + + T + + ++ + + Q++ +
Sbjct: 267 --KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVL- 323
Query: 186 FARNPQLI-------KTNKAELDYLREQLITSFLYDK--RLIQM--ENLKRYEMEINVTT 234
NP+ + + A D + DK +I+ L+ E
Sbjct: 324 -TTNPRRLSIIAESIRDGLATWDNWKH-----VNCDKLTTIIESSLNVLEPAEYR----- 372
Query: 235 GNAVAPIYVINNVDLSCVPANFTHTNHNIPAEGVIVNEEPIIWCECVDNCRDSSYCCGQL 294
++ LS P + +IP ++ +IW + + + +L
Sbjct: 373 -----KMFD----RLSVFPPSA-----HIP-TILLS----LIWFDVIKSDVMVVVN--KL 411
Query: 295 NDSVTAYDENKRLRIGQGTPIYECNKNCKCNASCPNRVIQLGTKI--KLGIYKTYNDCGW 352
+ + K I I K N L I I KT+
Sbjct: 412 HKYSLVEKQPKESTIS----IPSIYLELKVK--LENEY-ALHRSIVDHYNIPKTF--DSD 462
Query: 353 GVQTLEDIPKGTYVTEYVGEILTYEAASLRDNQTY-LFN---LDFNGSTSFVIDAYFNGS 408
L Y ++G + ++ + LF LDF F ++
Sbjct: 463 D---LIPPYLDQYFYSHIG----HHLKNIEHPERMTLFRMVFLDFR----F-LEQKIRHD 510
Query: 409 TSFVIDACNF-GNISHFINHSCDPNLAVYAAYIQCLDPNLHRLPLFAIRD--IQKGEQLS 465
++ A N G+I + + L Y YI DP RL + AI D + E L
Sbjct: 511 ST----AWNASGSILNTLQ-----QLKFYKPYICDNDPKYERL-VNAILDFLPKIEENLI 560
Query: 466 FSYYKSV 472
S Y +
Sbjct: 561 CSKYTDL 567
Score = 39.8 bits (92), Expect = 0.002
Identities = 21/120 (17%), Positives = 43/120 (35%), Gaps = 20/120 (16%)
Query: 349 DCGWGVQTLEDIPKGTYVTEYVGEILTYEAASLRDNQTY-LFNLDFNGSTSFVIDAYFNG 407
DC + ++D+PK E + I+ + + T LF + V
Sbjct: 34 DC----KDVQDMPKSILSKEEIDHII---MSKDAVSGTLRLFWTLLSKQEEMV------- 79
Query: 408 STSFVIDAC--NFGNISHFINHSC-DPNLAVYAAYIQCLDPNLHRLPLFAIRDIQKGEQL 464
FV + N+ + I P++ + YI+ D + +FA ++ + +
Sbjct: 80 -QKFVEEVLRINYKFLMSPIKTEQRQPSM-MTRMYIEQRDRLYNDNQVFAKYNVSRLQPY 137
>3n71_A Histone lysine methyltransferase SMYD1; heart development,
transcription; HET: SFG MES; 2.30A {Mus musculus}
Length = 490
Score = 51.9 bits (123), Expect = 3e-07
Identities = 30/232 (12%), Positives = 60/232 (25%), Gaps = 24/232 (10%)
Query: 259 TNHNIPAEGVIVNEEPIIWCECVDNCRDSSYCCGQLNDSVTAYDENKRLRI--------G 310
A VI E + C + + + + K
Sbjct: 23 ATKEFWAADVIFAERAYSAVVFDSLINFVCHTCFKRQEKLHRCGQCKFAHYCDRTCQKDA 82
Query: 311 QGTPIYECNKNCKCNASCPNRVIQLGTKIKLGIYKTYNDCGWGVQTLEDIPKGTYVTEYV 370
EC K + + + + +++D+ +V +
Sbjct: 83 WLNHKNECAAIKKYGKVPNENIRLAARIMWRVEREGTGLTEGCLVSVDDLQ--NHVEHFG 140
Query: 371 GEILTYEAASLRDNQTYLFNLDFNGSTSFVIDAYFNGST-SFVIDACNFGNISH------ 423
E + Y S ++ + + F +
Sbjct: 141 EEEQKELRVDVDTFLQYWPPQSQQFSMQYISHIFGVINCNGFTLSDQRGLQAVGVGIFPN 200
Query: 424 --FINHSCDPNLAVY-----AAYIQCLDPNLHRLPLFAIRDIQKGEQLSFSY 468
+NH C PN V ++ + R+ L A+ I +GE+L+ SY
Sbjct: 201 LGLVNHDCWPNCTVIFNNGNHEAVKSMFHTQMRIELRALGKISEGEELTVSY 252
>3ray_A PR domain-containing protein 11; structural genomics consortium,
SGC, histone methylation, Zn transcriptional regulation,
chromatin, transcription; 1.73A {Homo sapiens}
Length = 237
Score = 48.7 bits (115), Expect = 1e-06
Identities = 26/156 (16%), Positives = 45/156 (28%), Gaps = 25/156 (16%)
Query: 341 LGIYKTYNDCGWGVQTLEDIPKGTYVTEYVGEILTYEAASLRDNQTYLFNLDFNGSTSFV 400
+ + K + E IPKG Y G+I T + + + + + +
Sbjct: 74 MEVVKDTSGESDVRCVNEVIPKGHIFGPYEGQISTQD----KSAGFFSWLIVDKNNRYKS 129
Query: 401 IDAYFNGSTSFVIDACNFGNISHFINHSCDP---NLAVYAAYIQCLDPNLHRLPLFAIRD 457
ID N ++ S + NL + R+ A RD
Sbjct: 130 IDGSDETK----------ANWMRYVVISREEREQNLLAFQHS--------ERIYFRACRD 171
Query: 458 IQKGEQLSFSYYKSVTKEPTRPGGSNKVKCKCEAKN 493
I+ GE L Y + K + +
Sbjct: 172 IRPGEWLRVWYSEDYMKRLHSMSQETIHRNLARGEK 207
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND
domain, zinc finger MYND domain-containin 1, structural
genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A*
3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Length = 429
Score = 49.1 bits (116), Expect = 2e-06
Identities = 39/228 (17%), Positives = 69/228 (30%), Gaps = 26/228 (11%)
Query: 259 TNHNIPAEGVIVNEEPIIWCECVDNCRDSSYCCGQLND--------SVTAYDENKRLRIG 310
+ ++ +P+ + C + C + V Y K +
Sbjct: 21 AVTPLRPGELLFRSDPLAYTVCKGSRGVVCDRCLLGKEKLMRCSQCRVAKYCSAKCQKKA 80
Query: 311 QGTPIYECNKNCKCNASCPNRVIQLGTKIKLGIYKTYNDCGWGVQTLEDIPK-GTYVTEY 369
EC C P ++L ++ + + + D+ +TE
Sbjct: 81 WPDHKRECKCLKSCKPRYPPDSVRLLGRVVFKLMDGAPSESEKLYSFYDLESNINKLTED 140
Query: 370 VGEILTYEAASLRDNQTYLFNLDFNGSTSFVIDAYFNGST--SFVIDACNFGNISH---- 423
E L + + +F + F SF I +
Sbjct: 141 RKEGLRQLVMTFQHFMREEIQDASQLPPAFDLFEAFAKVICNSFTICNAEMQEVGVGLYP 200
Query: 424 ---FINHSCDPNLAVYAAYIQCLDPNLHRLPLFAIRDIQKGEQLSFSY 468
+NHSCDPN ++ N L L A+RDI+ GE+L+ Y
Sbjct: 201 SISLLNHSCDPNCSIV--------FNGPHLLLRAVRDIEVGEELTICY 240
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 32.7 bits (74), Expect = 0.34
Identities = 42/285 (14%), Positives = 74/285 (25%), Gaps = 93/285 (32%)
Query: 3 DDDDVICVSSSDYSISDVEQDTDVQEVEQKPDLNQVEIKLEEPEVKITSIKSEYPTIT-N 61
+ D + +SI D+ V P V + + K I+ Y +
Sbjct: 1647 NRADNHFKDTYGFSILDI--------VINNP----VNLTIHFGGEKGKRIRENYSAMIFE 1694
Query: 62 ISPEYTPRTRD-DKTDREQASSNFFKPPRTRDDKTDREQ-----ASSNFFKK-REWASLN 114
+ +T K E ++S F+ + T Q F+ +
Sbjct: 1695 TIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSK---- 1750
Query: 115 SPPIYDFGKKSPKRSLLG-SPSIEPKRSTKLNLG--TKLGCSKDVKNMKKEDQLEAV--- 168
G + G S LG L DV M E +E V
Sbjct: 1751 -------GLIPADATFAGHS------------LGEYAALASLADV--MSIESLVEVVFYR 1789
Query: 169 -NSVQNVDVQEINGH--IRNFARNPQLIKTNKAELDYLREQLITSFLYDKRLIQMENLKR 225
++Q ++ G A NP + + ++ E L+
Sbjct: 1790 GMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQ---------------------EALQY 1828
Query: 226 YEMEINVTTGNAVAPIYVINNVDLSCVPANFTHTNHNIPAEGVIV 270
+ TG V N+ N+ + +
Sbjct: 1829 VVERVGKRTGWLVEI-------------VNY-----NVENQQYVA 1855
Score = 29.2 bits (65), Expect = 4.7
Identities = 12/49 (24%), Positives = 21/49 (42%), Gaps = 5/49 (10%)
Query: 228 MEINVTTGNAVA-PIYVINNVDLSCVPANFTHTNHNIPAEGVI----VN 271
+E ++ V P+ I+N+ V TN ++PA + VN
Sbjct: 324 LEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVN 372
>2h21_A Ribulose-1,5 bisphosphate carboxylase/oxygenase; SET domain,
protein lysine methyltransferase, transferase; HET: SAM;
2.45A {Pisum sativum} SCOP: a.166.1.1 b.85.7.3 PDB:
2h23_A* 2h2e_A* 2h2j_A* 1p0y_A* 1ozv_A* 1mlv_A*
Length = 440
Score = 32.1 bits (72), Expect = 0.43
Identities = 11/49 (22%), Positives = 19/49 (38%), Gaps = 3/49 (6%)
Query: 423 HFINHSCDPNLAVYAAYIQC---LDPNLHRLPLFAIRDIQKGEQLSFSY 468
INHS +A ++ L + L + ++ GEQ+ Y
Sbjct: 191 DLINHSAGVTTEDHAYEVKGAAGLFSWDYLFSLKSPLSVKAGEQVYIQY 239
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 31.3 bits (70), Expect = 0.48
Identities = 14/93 (15%), Positives = 34/93 (36%), Gaps = 34/93 (36%)
Query: 35 LNQVEIKLEEPEVKITSIKS--EYPTITNISPEYTPR--TRDDKTD------REQAS--- 81
+ Q + +EPE SI+ E E R D + RE+A
Sbjct: 74 IAQADRLTQEPE----SIRKWRE---------EQRKRLQELDAASKVMEQEWREKAKKDL 120
Query: 82 SNFFKPPRTRDDKTDREQASS-----NFFKKRE 109
+ + + ++ ++ + ++ F+++ +
Sbjct: 121 EEWN---QRQSEQVEKNKINNRIADKAFYQQPD 150
>3smt_A Histone-lysine N-methyltransferase SETD3; histone
methyltransferase, histone modification, LYSI
translational modification, structural genomics; HET:
SAM; 2.04A {Homo sapiens}
Length = 497
Score = 30.6 bits (68), Expect = 1.5
Identities = 9/45 (20%), Positives = 15/45 (33%), Gaps = 7/45 (15%)
Query: 424 FINHSCDPNLAVYAAYIQCLDPNLHRLPLFAIRDIQKGEQLSFSY 468
NH+ Y + A++D + GEQ+ Y
Sbjct: 275 MCNHTNGLITTGYNLEDDRCE-------CVALQDFRAGEQIYIFY 312
>2jh1_A MIC1, micronemal protein 1; cell adhesion, microneme, MAR domain,
cell invasion; 1.90A {Toxoplasma gondii} PDB: 2jh7_A*
2jhd_A* 3f53_A* 3f5a_A* 3f5e_A*
Length = 246
Score = 29.6 bits (65), Expect = 2.0
Identities = 12/59 (20%), Positives = 19/59 (32%), Gaps = 1/59 (1%)
Query: 276 IWCECVDNCRDSSYCCGQLNDSVTAYDENKRLRIGQ-GTPIYECNKNCKCNASCPNRVI 333
++ EC NC + YC G + T D+ I + C C +
Sbjct: 173 VYAECASNCGTTWYCPGGRRGTSTELDKRHYTEEEGIRQAIGSVDSPCSEVEVCLPKDE 231
>3nkq_A Ectonucleotide pyrophosphatase/phosphodiesterase member 2;
lysophospholipase D, autotaxin, ENPP2, lysophosphatidic
acid hydrolase; HET: NAG BMA MAN NKQ; 1.70A {Mus
musculus} PDB: 3nkm_A* 3nkn_A* 3nkp_A* 3nko_A* 3nkr_A*
2xrg_A* 2xr9_A*
Length = 831
Score = 29.5 bits (65), Expect = 3.4
Identities = 10/54 (18%), Positives = 18/54 (33%)
Query: 278 CECVDNCRDSSYCCGQLNDSVTAYDENKRLRIGQGTPIYECNKNCKCNASCPNR 331
C C + C+ S CC ++ + + C C+ C +R
Sbjct: 38 CRCDNLCKSYSSCCHDFDELCLKTARGWECTKDRCGEVRNEENACHCSEDCLSR 91
>1h3i_A Histone H3 lysine 4 specific methyltransferase; 2.1A {Homo sapiens}
SCOP: b.76.2.1 b.85.7.1 PDB: 1mt6_A* 1n6c_A* 1muf_A
Length = 293
Score = 28.5 bits (64), Expect = 5.2
Identities = 13/57 (22%), Positives = 25/57 (43%), Gaps = 17/57 (29%)
Query: 419 GNISHFINHSCDPNLAVYAAY-------IQCLDPNLHRLPLFAIRDIQKGEQLSFSY 468
++ H NHS PN +Y + I+C+ +R ++ E+L+ +Y
Sbjct: 238 ASLGHKANHSFTPN-CIYDMFVHPRFGPIKCIR---------TLRAVEADEELTVAY 284
>2i3y_A Epididymal secretory glutathione peroxidase; thioredoxin fold,
epididymal androgen related protein, struc genomics,
structural genomics consortium; 2.00A {Homo sapiens}
Length = 215
Score = 27.7 bits (62), Expect = 6.7
Identities = 12/55 (21%), Positives = 21/55 (38%), Gaps = 5/55 (9%)
Query: 421 ISHFINHSCDPNLAVYAAYIQCLDPNLHRLPL-----FAIRDIQKGEQLSFSYYK 470
+ H +HS +L Y Q + + H+ + + K E +SF Y
Sbjct: 1 MHHHHHHSSGVDLGTENLYFQSMKMDCHKDEKGTIYDYEAIALNKNEYVSFKQYV 55
>1dx5_I Thrombomodulin; serine proteinase, EGF-like domains, anticoagulant
complex, antifibrinolytic complex, hydrolase-hydrolase
inhibitor COM; HET: AR7 NDG; 2.30A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.3.11.1 PDB: 3gis_X 1dqb_A* 1zaq_A
1adx_A 2adx_A
Length = 118
Score = 26.9 bits (60), Expect = 8.0
Identities = 11/66 (16%), Positives = 17/66 (25%), Gaps = 25/66 (37%)
Query: 278 CECVDNC--------RDSSYCCG-----QLNDSVTAYDENKRLRIGQGTPIYECNKNCKC 324
C+ N ++ C L+D D + EC C
Sbjct: 42 CQMFCNQTACPADCDPNTQASCECPEGYILDDGFICTDID------------ECENGGFC 89
Query: 325 NASCPN 330
+ C N
Sbjct: 90 SGVCHN 95
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.133 0.397
Gapped
Lambda K H
0.267 0.0451 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,402,939
Number of extensions: 431901
Number of successful extensions: 1034
Number of sequences better than 10.0: 1
Number of HSP's gapped: 932
Number of HSP's successfully gapped: 50
Length of query: 502
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 404
Effective length of database: 3,965,535
Effective search space: 1602076140
Effective search space used: 1602076140
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (27.2 bits)