RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy7969
(502 letters)
>d1mvha_ b.85.7.1 (A:) SET domain of Clr4 {Fission yeast
(Schizosaccharomyces pombe) [TaxId: 4896]}
Length = 269
Score = 168 bits (427), Expect = 2e-49
Identities = 83/248 (33%), Positives = 126/248 (50%), Gaps = 15/248 (6%)
Query: 240 PIYVINNVDL-SCVPANFTHTNHNIPAEGVIVNEEPI-IWCECVD----NCRDSSYCC-- 291
+ ++N VD C +F + +GVI + C C + + S C
Sbjct: 28 EVTLVNEVDDEPCPSLDFQFISQYRLTQGVIPPDPNFQSGCNCSSLGGCDLNNPSRCECL 87
Query: 292 -GQLNDSVTAYDENKRLRIGQGTPIYECNKNCKCNASCPNRVIQLGTKIKLGIYKTYNDC 350
+ AYD R+R G IYECN C C+ CPNRV+Q G + L I+KT +
Sbjct: 88 DDLDEPTHFAYDAQGRVRADTGAVIYECNSFCSCSMECPNRVVQRGRTLPLEIFKT-KEK 146
Query: 351 GWGVQTLEDIPKGTYVTEYVGEILTYEAASLRDNQTYLFNLDFNGSTSFVIDAYFNGSTS 410
GWGV++L P GT++T Y+GE++T A+ RD D +G T F+ ++
Sbjct: 147 GWGVRSLRFAPAGTFITCYLGEVITSAEAAKRDKNY-----DDDGITYLFDLDMFDDASE 201
Query: 411 FVIDACNFGNISHFINHSCDPNLAVYAAYIQCLDPNLHRLPLFAIRDIQKGEQLSFSYYK 470
+ +DA N+G++S F NHSC PN+A+Y+A ++ L FAI+DIQ E+L+F Y
Sbjct: 202 YTVDAQNYGDVSRFFNHSCSPNIAIYSAVRNHGFRTIYDLAFFAIKDIQPLEELTFDYAG 261
Query: 471 SVTKEPTR 478
+ P +
Sbjct: 262 AKDFSPVQ 269
>d1ml9a_ b.85.7.1 (A:) Dim-5 {Fungus (Neurospora crassa) [TaxId:
5141]}
Length = 284
Score = 167 bits (423), Expect = 1e-48
Identities = 78/283 (27%), Positives = 123/283 (43%), Gaps = 34/283 (12%)
Query: 240 PIYVINNVDLSCVPANFTHTNHNIPAEGVIVNEEPI-IWCECVDNCRDSS-------YCC 291
PI ++N D + + NF +H+I + V V ++ + C C +
Sbjct: 3 PISIVNREDDAFLNPNFRFIDHSIIGKNVPVADQSFRVGCSCASDEECMYSTCQCLDEMA 62
Query: 292 GQLNDSVTAYDENKRLR---------------IGQGTPIYECNKNCKCNASCPNRVIQLG 336
++ Y KR + PIYEC++ C C+ CPNRV++ G
Sbjct: 63 PDSDEEADPYTRKKRFAYYSQGAKKGLLRDRVLQSQEPIYECHQGCACSKDCPNRVVERG 122
Query: 337 TKIKLGIYKTYNDCGWGVQTLEDIPKGTYVTEYVGEILTYEAASLR------DNQTYLFN 390
+ L I++T D GWGV+ +I +G +V Y+GEI+T E A R + ++
Sbjct: 123 RTVPLQIFRT-KDRGWGVKCPVNIKRGQFVDRYLGEIITSEEADRRRAESTIARRKDVYL 181
Query: 391 LDFNGSTSFVIDAYFNGSTSFVIDACNFGNISHFINHSCDPNLAVYAAYIQCLDPNLHRL 450
+ + +D + FINHSCDPN+A++A D ++H L
Sbjct: 182 FALDKFSDPDSLDPLLAGQPLEVDGEYMSGPTRFINHSCDPNMAIFARVGDHADKHIHDL 241
Query: 451 PLFAIRDIQKGEQLSFSYYKSVTKEPTR----PGGSNKVKCKC 489
LFAI+DI KG +L+F Y +T + S KC C
Sbjct: 242 ALFAIKDIPKGTELTFDYVNGLTGLESDAHDPSKISEMTKCLC 284
>d2f69a2 b.85.7.1 (A:194-364) Histone H3 K4-specific
methyltransferase SET7/9 catalytic domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 171
Score = 94.4 bits (234), Expect = 3e-23
Identities = 24/155 (15%), Positives = 53/155 (34%), Gaps = 17/155 (10%)
Query: 317 ECNKNCKC-NASCPNRVIQLGTKIKLGIYKTYNDCGWGVQTLEDIPKGTYVTEYVGEILT 375
+ +C NA P+ ++ + + G G+ + + T ++ Y G +T
Sbjct: 2 KSTSSCISTNALLPDPYESE--RVYVAESLI-SSAGEGLFSKVAVGPNTVMSFYNGVRIT 58
Query: 376 YEAASLRD--NQTYLFNLDFNGSTSFVIDAYFNGSTSFVIDACNFGNISHFINHSCDPNL 433
++ RD +LD + + + + ++ H NHS PN
Sbjct: 59 HQEVDSRDWALNGNTLSLDE--------ETVIDVPEPYNHVSKYCASLGHKANHSFTPNC 110
Query: 434 AVYAAYIQCLDPNLHRLPLFAIRDIQKGEQLSFSY 468
+ +R ++ E+L+ +Y
Sbjct: 111 IYDMFVH---PRFGPIKCIRTLRAVEADEELTVAY 142
>d2g46a1 b.85.7.2 (A:1-119) Viral histone H3 Lysine 27
Methyltransferase {Paramecium bursaria chlorella virus
1, PBCV-1 [TaxId: 10506]}
Length = 119
Score = 66.0 bits (160), Expect = 7e-14
Identities = 27/129 (20%), Positives = 44/129 (34%), Gaps = 28/129 (21%)
Query: 340 KLGIYKTYNDCGWGVQTLEDIPKGTYVTEYVGEILTYEAASLRDNQTYLFNLDFNGSTSF 399
++ + K+ G+GV + KG V E + + + YLF+
Sbjct: 5 RVIVKKS-PLGGYGVFARKSFEKGELVEECLCIVRHNDDWGTALE-DYLFSRKN------ 56
Query: 400 VIDAYFNGSTSFVIDACNFGNISHFINHSCDPNLAVYAAYIQCLDPNLHRLPLFAIRDIQ 459
+ NHS DPN L L R+ +F I+ I
Sbjct: 57 --------------MSAMALGFGAIFNHSKDPN------ARHELTAGLKRMRIFTIKPIA 96
Query: 460 KGEQLSFSY 468
GE+++ SY
Sbjct: 97 IGEEITISY 105
>d2h2ja2 b.85.7.3 (A:50-310) RuBisCo LSMT catalytic domain {Garden
pea (Pisum sativum) [TaxId: 3888]}
Length = 261
Score = 38.0 bits (87), Expect = 0.002
Identities = 15/76 (19%), Positives = 25/76 (32%), Gaps = 12/76 (15%)
Query: 396 STSFVIDAYFNGSTSFVIDACNFGNISHFINHSCDPNLAVYAAYIQC---LDPNLHRLPL 452
S +F N + D INHS +A ++ L + L
Sbjct: 172 SRAFSRLRNENLVVVPMAD---------LINHSAGVTTEDHAYEVKGAAGLFSWDYLFSL 222
Query: 453 FAIRDIQKGEQLSFSY 468
+ ++ GEQ+ Y
Sbjct: 223 KSPLSVKAGEQVYIQY 238
>d2pk8a1 d.274.1.1 (A:2-95) Hypothetical protein PF0899 {Pyrococcus
furiosus [TaxId: 2261]}
Length = 94
Score = 26.4 bits (58), Expect = 2.8
Identities = 9/55 (16%), Positives = 22/55 (40%)
Query: 175 DVQEINGHIRNFARNPQLIKTNKAELDYLREQLITSFLYDKRLIQMENLKRYEME 229
+++E ++ NP +I + ++L L + + N+K +E
Sbjct: 12 EIEEKMNELKMDGFNPDIILFGREAYNFLSNLLKKEMEEEGPFTHVSNIKIEILE 66
>d2b3ja1 c.97.1.2 (A:1-151) tRNA adenosine deaminase TadA
{Staphylococcus aureus [TaxId: 1280]}
Length = 151
Score = 26.8 bits (58), Expect = 4.0
Identities = 16/133 (12%), Positives = 35/133 (26%), Gaps = 12/133 (9%)
Query: 254 ANFTHTNHNIPAEGVIVNEEPIIWCECVDNCRDSSYCCGQLNDSVTAYDENKRLRIGQGT 313
A +P +I ++ +I + ++ + +G
Sbjct: 15 AKKAAQLGEVPIGAIITKDDEVIARAHNLRETLQQPTAHAEHIAIERAAKVLGSWRLEGC 74
Query: 314 PIYECNKNC-----KCNASCPNRVIQLGTKIKLGIYKTYNDCGWGVQTLEDIPKGTYVTE 368
+Y + C S RV+ K G G + L+ +
Sbjct: 75 TLYVTLEPCVMCAGTIVMSRIPRVVYGADDPKGGC------SGSLMNLLQQ-SNFNHRAI 127
Query: 369 YVGEILTYEAASL 381
+L ++L
Sbjct: 128 VDKGVLKEACSTL 140
>d1vlia1 b.85.1.1 (A:297-368) Spore coat polysaccharide biosynthesis
protein SpsE, C-terminal domain {Bacillus subtilis
[TaxId: 1423]}
Length = 72
Score = 25.4 bits (56), Expect = 4.6
Identities = 10/33 (30%), Positives = 13/33 (39%), Gaps = 5/33 (15%)
Query: 452 LFAIRDIQKGEQLSFSYYKSVTKEPTRPGGSNK 484
+F IQKGE S + RPG +
Sbjct: 10 IFTTAPIQKGEAFSEDNIAVL-----RPGQKPQ 37
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.315 0.133 0.397
Gapped
Lambda K H
0.267 0.0698 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,855,089
Number of extensions: 88429
Number of successful extensions: 265
Number of sequences better than 10.0: 1
Number of HSP's gapped: 245
Number of HSP's successfully gapped: 24
Length of query: 502
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 413
Effective length of database: 1,185,626
Effective search space: 489663538
Effective search space used: 489663538
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.0 bits)