BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7970
(290 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3T6P|A Chain A, Iap Antagonist-Induced Conformational Change In Ciap1
Promotes E3 Ligase Activation Via Dimerization
Length = 345
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 25/36 (69%)
Query: 81 CRICSDLKRDILFQPCGHVACCSVCAPRVKKCLICR 116
C++C D + ++F PCGH+ C CAP ++KC ICR
Sbjct: 298 CKVCMDKEVSVVFIPCGHLVVCQECAPSLRKCPICR 333
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 121 KRIKIEE-CMVCSLKKASVLFKPCYHMVACESCASLMKKCVQCR 163
+R++ E C VC K+ SV+F PC H+V C+ CA ++KC CR
Sbjct: 290 RRLQEERTCKVCMDKEVSVVFIPCGHLVVCQECAPSLRKCPICR 333
Score = 35.8 bits (81), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 28/44 (63%), Gaps = 2/44 (4%)
Query: 243 EQTMCPVCLDRLKNMIFL-CGH-GTCQMCGDRMSECPICRKAVE 284
E+ C VC+D+ +++F+ CGH CQ C + +CPICR ++
Sbjct: 294 EERTCKVCMDKEVSVVFIPCGHLVVCQECAPSLRKCPICRGIIK 337
>pdb|3EB5|A Chain A, Structure Of The Ciap2 Ring Domain
pdb|3EB6|A Chain A, Structure Of The Ciap2 Ring Domain Bound To Ubch5b
Length = 74
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 29/44 (65%)
Query: 81 CRICSDLKRDILFQPCGHVACCSVCAPRVKKCLICREPVEKRIK 124
C++C D + I+F PCGH+ C CAP ++KC ICR ++ ++
Sbjct: 27 CKVCMDKEVSIVFIPCGHLVVCKDCAPSLRKCPICRSTIKGTVR 70
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 36/53 (67%), Gaps = 4/53 (7%)
Query: 118 PVEKRIK-IEE---CMVCSLKKASVLFKPCYHMVACESCASLMKKCVQCRTQI 166
PVE++++ ++E C VC K+ S++F PC H+V C+ CA ++KC CR+ I
Sbjct: 13 PVEEQLRRLQEERTCKVCMDKEVSIVFIPCGHLVVCKDCAPSLRKCPICRSTI 65
Score = 35.0 bits (79), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
Query: 243 EQTMCPVCLDRLKNMIFL-CGH-GTCQMCGDRMSECPICRKAVEKRILLY 290
E+ C VC+D+ +++F+ CGH C+ C + +CPICR ++ + +
Sbjct: 23 EERTCKVCMDKEVSIVFIPCGHLVVCKDCAPSLRKCPICRSTIKGTVRTF 72
>pdb|4AUQ|B Chain B, Structure Of Birc7-Ubch5b-Ub Complex.
pdb|4AUQ|E Chain E, Structure Of Birc7-Ubch5b-Ub Complex
Length = 62
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 81 CRICSDLKRDILFQPCGHVACCSVCAPRVKKCLICREPVEKRIK 124
C++C D I+F PCGH+ C+ CAP ++ C ICR PV R++
Sbjct: 16 CKVCLDRAVSIVFVPCGHLV-CAECAPGLQLCPICRAPVRSRVR 58
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 243 EQTMCPVCLDRLKNMIFL-CGHGTCQMCGDRMSECPICRKAVEKRILLY 290
E+ C VCLDR +++F+ CGH C C + CPICR V R+ +
Sbjct: 12 EERTCKVCLDRAVSIVFVPCGHLVCAECAPGLQLCPICRAPVRSRVRTF 60
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Query: 121 KRIKIEE-CMVCSLKKASVLFKPCYHMVACESCASLMKKCVQCRTQI 166
+R++ E C VC + S++F PC H+V C CA ++ C CR +
Sbjct: 8 RRLQEERTCKVCLDRAVSIVFVPCGHLV-CAECAPGLQLCPICRAPV 53
>pdb|2YHN|A Chain A, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHN|B Chain B, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|A Chain A, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|C Chain C, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|E Chain E, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|G Chain G, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
Length = 79
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 35/53 (66%), Gaps = 3/53 (5%)
Query: 120 EKRIKIEE---CMVCSLKKASVLFKPCYHMVACESCASLMKKCVQCRTQIDHM 169
EK K++E CMVC ++ + F PC H V CESCA+ ++ C CR++++H+
Sbjct: 10 EKLRKLKEAMLCMVCCEEEINSTFCPCGHTVCCESCAAQLQSCPVCRSRVEHV 62
Score = 37.0 bits (84), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 24/40 (60%)
Query: 81 CRICSDLKRDILFQPCGHVACCSVCAPRVKKCLICREPVE 120
C +C + + + F PCGH CC CA +++ C +CR VE
Sbjct: 21 CMVCCEEEINSTFCPCGHTVCCESCAAQLQSCPVCRSRVE 60
Score = 31.2 bits (69), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 243 EQTMCPVCLDRLKNMIFL-CGHGTC-QMCGDRMSECPICRKAVEKRILLY 290
E +C VC + N F CGH C + C ++ CP+CR VE +Y
Sbjct: 17 EAMLCMVCCEEEINSTFCPCGHTVCCESCAAQLQSCPVCRSRVEHVQHVY 66
>pdb|4IC2|A Chain A, Crystal Structure Of The Xiap Ring Domain
pdb|4IC2|B Chain B, Crystal Structure Of The Xiap Ring Domain
Length = 74
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 25/45 (55%)
Query: 81 CRICSDLKRDILFQPCGHVACCSVCAPRVKKCLICREPVEKRIKI 125
C+IC D I+F PCGH+ C CA V KC +C + + KI
Sbjct: 27 CKICMDRNIAIVFVPCGHLVTCKQCAEAVDKCPMCYTVITFKQKI 71
Score = 35.0 bits (79), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 121 KRIKIEE-CMVCSLKKASVLFKPCYHMVACESCASLMKKCVQCRTQIDHMHPMVV 174
+R++ E+ C +C + +++F PC H+V C+ CA + KC C T I + +
Sbjct: 19 RRLQEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAVDKCPMCYTVITFKQKIFM 73
Score = 35.0 bits (79), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 28/43 (65%), Gaps = 2/43 (4%)
Query: 243 EQTMCPVCLDRLKNMIFL-CGH-GTCQMCGDRMSECPICRKAV 283
E+ +C +C+DR ++F+ CGH TC+ C + + +CP+C +
Sbjct: 23 EEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAVDKCPMCYTVI 65
>pdb|4IC3|A Chain A, Crystal Structure Of The F495l Mutant Xiap Ring Domain
pdb|4IC3|B Chain B, Crystal Structure Of The F495l Mutant Xiap Ring Domain
Length = 74
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 25/45 (55%)
Query: 81 CRICSDLKRDILFQPCGHVACCSVCAPRVKKCLICREPVEKRIKI 125
C+IC D I+F PCGH+ C CA V KC +C + + KI
Sbjct: 27 CKICMDRNIAIVFVPCGHLVTCKQCAEAVDKCPMCYTVITFKQKI 71
Score = 35.4 bits (80), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 121 KRIKIEE-CMVCSLKKASVLFKPCYHMVACESCASLMKKCVQCRTQIDHMHPMVV 174
+R++ E+ C +C + +++F PC H+V C+ CA + KC C T I +++
Sbjct: 19 RRLQEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAVDKCPMCYTVITFKQKILM 73
Score = 35.4 bits (80), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 34/51 (66%), Gaps = 4/51 (7%)
Query: 243 EQTMCPVCLDRLKNMIFL-CGH-GTCQMCGDRMSECPICRKAV--EKRILL 289
E+ +C +C+DR ++F+ CGH TC+ C + + +CP+C + +++IL+
Sbjct: 23 EEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAVDKCPMCYTVITFKQKILM 73
>pdb|2ECG|A Chain A, Solution Structure Of The Ring Domain Of The Baculoviral
Iap Repeat-Containing Protein 4 From Homo Sapiens
Length = 75
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 25/45 (55%)
Query: 81 CRICSDLKRDILFQPCGHVACCSVCAPRVKKCLICREPVEKRIKI 125
C+IC D I+F PCGH+ C CA V KC +C + + KI
Sbjct: 28 CKICMDRNIAIVFVPCGHLVTCKQCAEAVDKCPMCYTVITFKQKI 72
Score = 35.0 bits (79), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 28/43 (65%), Gaps = 2/43 (4%)
Query: 243 EQTMCPVCLDRLKNMIFL-CGH-GTCQMCGDRMSECPICRKAV 283
E+ +C +C+DR ++F+ CGH TC+ C + + +CP+C +
Sbjct: 24 EEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAVDKCPMCYTVI 66
Score = 34.3 bits (77), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 23/39 (58%)
Query: 128 CMVCSLKKASVLFKPCYHMVACESCASLMKKCVQCRTQI 166
C +C + +++F PC H+V C+ CA + KC C T I
Sbjct: 28 CKICMDRNIAIVFVPCGHLVTCKQCAEAVDKCPMCYTVI 66
>pdb|2YSL|A Chain A, Solution Structure Of The Ring Domain (1-66) From
Tripartite Motif-containing Protein 31
Length = 73
Score = 34.7 bits (78), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 8/51 (15%)
Query: 243 EQTMCPVCLDRLKNMIFL-CGHGTCQMCGDRMSE-------CPICRKAVEK 285
E+ +CP+CLD L+ + + CGH C C ++ E CP+C+ +V K
Sbjct: 19 EEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRK 69
>pdb|2ECN|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 141
Length = 70
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 4/42 (9%)
Query: 243 EQTMCPVCLDRLKNMIFLCGHGTCQMCGDRMSE----CPICR 280
++ C +C+D ++I C H CQ C D+ S+ CPICR
Sbjct: 14 DEEECCICMDGRADLILPCAHSFCQKCIDKWSDRHRNCPICR 55
>pdb|3RPG|C Chain C, Bmi1RING1B-Ubch5c Complex Structure
Length = 121
Score = 32.7 bits (73), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 29/55 (52%), Gaps = 12/55 (21%)
Query: 244 QTMCPVCLDRLKNMIFL--CGHGTCQMC-------GDRMSECPICRKA-VEKRIL 288
+ MCP+CLD LKN + C H C C G++ ECP CRK V KR L
Sbjct: 53 ELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNK--ECPTCRKKLVSKRSL 105
>pdb|2CKL|B Chain B, Ring1b-Bmi1 E3 Catalytic Domain Structure
Length = 165
Score = 32.3 bits (72), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 29/55 (52%), Gaps = 12/55 (21%)
Query: 244 QTMCPVCLDRLKNMIFL--CGHGTCQMC-------GDRMSECPICRKA-VEKRIL 288
+ MCP+CLD LKN + C H C C G++ ECP CRK V KR L
Sbjct: 54 ELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNK--ECPTCRKKLVSKRSL 106
>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
pdb|3ZKJ|D Chain D, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
Length = 261
Score = 32.3 bits (72), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 6 QAADKKSSASIACFLAGNGADLSIKNKKGQTPLDLCP 42
A + +S +AC L GAD KN +G+ P++L P
Sbjct: 171 HAVARTASEELACLLMDFGADTQAKNAEGKRPVELVP 207
>pdb|2H0D|B Chain B, Structure Of A Bmi-1-Ring1b Polycomb Group Ubiquitin
Ligase Complex
Length = 100
Score = 32.3 bits (72), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 29/55 (52%), Gaps = 12/55 (21%)
Query: 244 QTMCPVCLDRLKNMIFL--CGHGTCQMC-------GDRMSECPICRKA-VEKRIL 288
+ MCP+CLD LKN + C H C C G++ ECP CRK V KR L
Sbjct: 34 ELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNK--ECPTCRKKLVSKRSL 86
>pdb|2EA5|A Chain A, Solution Structure Of The Ring Domain Of The Human Cell
Growth Regulator With Ring Finger Domain 1 Protein
Length = 68
Score = 31.6 bits (70), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Query: 117 EPVEKRIKIEECMVCSLKKASVLFKPCYHMVACESCASLMKKCVQCRTQIDHMHPM 172
EP E+ K +C+VC + + PC H C+ C ++C CR + +
Sbjct: 9 EPSEENSK--DCVVCQNGTVNWVLLPCRHTCLCDGCVKYFQQCPMCRQFVQESFAL 62
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 11/46 (23%), Positives = 23/46 (50%)
Query: 80 ECRICSDLKRDILFQPCGHVACCSVCAPRVKKCLICREPVEKRIKI 125
+C +C + + + PC H C C ++C +CR+ V++ +
Sbjct: 17 DCVVCQNGTVNWVLLPCRHTCLCDGCVKYFQQCPMCRQFVQESFAL 62
>pdb|1FBV|A Chain A, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function In
Ubiquitin-Protein Ligases
Length = 388
Score = 31.6 bits (70), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 77 TLDECRICSDLKRDILFQPCGHVACCS 103
T C+IC++ +D+ +PCGH+ C S
Sbjct: 331 TFQLCKICAENDKDVKIEPCGHLMCTS 357
>pdb|2Y1M|A Chain A, Structure Of Native C-Cbl
pdb|2Y1M|B Chain B, Structure Of Native C-Cbl
pdb|2Y1M|C Chain C, Structure Of Native C-Cbl
pdb|2Y1M|D Chain D, Structure Of Native C-Cbl
pdb|2Y1M|E Chain E, Structure Of Native C-Cbl
pdb|2Y1M|F Chain F, Structure Of Native C-Cbl
pdb|2Y1N|A Chain A, Structure Of C-Cbl-Zap-70 Peptide Complex
pdb|2Y1N|C Chain C, Structure Of C-Cbl-Zap-70 Peptide Complex
Length = 389
Score = 31.6 bits (70), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 77 TLDECRICSDLKRDILFQPCGHVACCS 103
T C+IC++ +D+ +PCGH+ C S
Sbjct: 331 TFQLCKICAENDKDVKIEPCGHLMCTS 357
>pdb|4A4C|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
Length = 391
Score = 31.6 bits (70), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 77 TLDECRICSDLKRDILFQPCGHVACCS 103
T C+IC++ +D+ +PCGH+ C S
Sbjct: 333 TFQLCKICAENDKDVKIEPCGHLMCTS 359
>pdb|4A4B|A Chain A, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
Length = 391
Score = 31.6 bits (70), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 77 TLDECRICSDLKRDILFQPCGHVACCS 103
T C+IC++ +D+ +PCGH+ C S
Sbjct: 333 TFQLCKICAENDKDVKIEPCGHLMCTS 359
>pdb|3VGO|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|B Chain B, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|C Chain C, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
Length = 394
Score = 31.6 bits (70), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 77 TLDECRICSDLKRDILFQPCGHVACCS 103
T C+IC++ +D+ +PCGH+ C S
Sbjct: 337 TFQLCKICAENDKDVKIEPCGHLMCTS 363
>pdb|2ECV|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Of Tripartite Motif-Containing Protein 5
Length = 85
Score = 30.8 bits (68), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 11/53 (20%)
Query: 243 EQTMCPVCLDRLKNMIFL-CGHGTCQMC----------GDRMSECPICRKAVE 284
E+ CP+CL+ L + L CGH CQ C S CP+CR + +
Sbjct: 18 EEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQ 70
>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9
(Hasb9-2), An Ankyrin Repeat Protein
Length = 285
Score = 30.8 bits (68), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 6 QAADKKSSASIACFLAGNGADLSIKNKKGQTPLDLCP 42
A + +S +AC L GAD KN +G+ P++L P
Sbjct: 227 HAVVRTASEELACLLMDFGADTQAKNAEGKRPVELVP 263
>pdb|4A49|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b Complex
Length = 84
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 77 TLDECRICSDLKRDILFQPCGHVACCS 103
T C+IC++ +D+ +PCGH+ C S
Sbjct: 26 TFQLCKICAENDKDVKIEPCGHLMCTS 52
>pdb|2LDR|A Chain A, Solution Structure Of Helix-Ring Domain Of Cbl-B In The
Tyr363 Phosphorylated Form
Length = 82
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 77 TLDECRICSDLKRDILFQPCGHVACCS 103
T C+IC++ +D+ +PCGH+ C S
Sbjct: 25 TFQLCKICAENDKDVKIEPCGHLMCTS 51
>pdb|2K4D|A Chain A, E2-C-Cbl Recognition Is Necessary But Not Sufficient For
Ubiquitination Activity
Length = 83
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 77 TLDECRICSDLKRDILFQPCGHVACCS 103
T C+IC++ +D+ +PCGH+ C S
Sbjct: 23 TFQLCKICAENDKDVKIEPCGHLMCTS 49
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 28/54 (51%)
Query: 8 ADKKSSASIACFLAGNGADLSIKNKKGQTPLDLCPDPNLCKALTKCYKDKEVDQ 61
A K+ + L +GAD ++ N G++ +D+ P P L + LT +K + Q
Sbjct: 131 AASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQ 184
>pdb|2YSJ|A Chain A, Solution Structure Of The Ring Domain (1-56) From
Tripartite Motif-containing Protein 31
Length = 63
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 8/45 (17%)
Query: 243 EQTMCPVCLDRLKNMIFL-CGHGTCQMCGDRMSE-------CPIC 279
E+ +CP+CLD L+ + + CGH C C ++ E CP+C
Sbjct: 19 EEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63
>pdb|1JM7|A Chain A, Solution Structure Of The Brca1/bard1 Ring-domain
Heterodimer
Length = 112
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 8/50 (16%)
Query: 247 CPVCLDRLKNMIFL-CGHGTCQMCGDRM-------SECPICRKAVEKRIL 288
CP+CL+ +K + C H C+ C ++ S+CP+C+ + KR L
Sbjct: 24 CPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSL 73
>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWS|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWT|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWV|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWW|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWW|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWX|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
pdb|3TWX|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
Length = 165
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 18/33 (54%)
Query: 11 KSSASIACFLAGNGADLSIKNKKGQTPLDLCPD 43
K I L +GAD + KN+ G TPLDL D
Sbjct: 118 KGKYEICKLLLQHGADPTKKNRDGNTPLDLVKD 150
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 19 FLAGNGADLSIKNKKGQTPLDLCPD 43
L NGAD++ ++KG TPL L D
Sbjct: 32 ILMANGADVNANDRKGNTPLHLAAD 56
>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1
Length = 167
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 18/33 (54%)
Query: 11 KSSASIACFLAGNGADLSIKNKKGQTPLDLCPD 43
K I L +GAD + KN+ G TPLDL D
Sbjct: 120 KGKYEICKLLLQHGADPTKKNRDGNTPLDLVKD 152
>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
pdb|3TWQ|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
Length = 175
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 18/33 (54%)
Query: 11 KSSASIACFLAGNGADLSIKNKKGQTPLDLCPD 43
K I L +GAD + KN+ G TPLDL D
Sbjct: 122 KGKYEICKLLLQHGADPTKKNRDGNTPLDLVKD 154
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 29.3 bits (64), Expect = 2.7, Method: Composition-based stats.
Identities = 12/21 (57%), Positives = 15/21 (71%)
Query: 20 LAGNGADLSIKNKKGQTPLDL 40
L NGAD++ K+K G TPL L
Sbjct: 25 LMANGADVAAKDKNGSTPLHL 45
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability
Of Designed Ankyrin Repeat Proteins With A Redesigned
C- Capping Module
Length = 91
Score = 28.1 bits (61), Expect = 5.4, Method: Composition-based stats.
Identities = 12/21 (57%), Positives = 15/21 (71%)
Query: 20 LAGNGADLSIKNKKGQTPLDL 40
L NGAD++ K+K G TPL L
Sbjct: 21 LMANGADVNAKDKDGYTPLHL 41
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability
Of Designed Ankyrin Repeat Proteins With A Redesigned
C- Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability
Of Designed Ankyrin Repeat Proteins With A Redesigned
C- Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability
Of Designed Ankyrin Repeat Proteins With A Redesigned
C- Capping Module
Length = 157
Score = 28.1 bits (61), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 19 FLAGNGADLSIKNKKGQTPLDLC 41
L NGAD++ K+K G TPL L
Sbjct: 20 ILMANGADVNAKDKDGYTPLHLA 42
>pdb|2ECW|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Tripartite Motif Protein 30
Length = 85
Score = 28.1 bits (61), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 11/49 (22%)
Query: 243 EQTMCPVCLDRLKNMIFL-CGHGTCQMC----------GDRMSECPICR 280
E+ CP+CL+ LK + C H C+ C D CP+CR
Sbjct: 18 EEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCR 66
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability
Of Designed Ankyrin Repeat Proteins With A Redesigned
C- Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability
Of Designed Ankyrin Repeat Proteins With A Redesigned
C- Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability
Of Designed Ankyrin Repeat Proteins With A Redesigned
C- Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability
Of Designed Ankyrin Repeat Proteins With A Redesigned
C- Capping Module
Length = 157
Score = 28.1 bits (61), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 19 FLAGNGADLSIKNKKGQTPLDLC 41
L NGAD++ K+K G TPL L
Sbjct: 20 ILMANGADVNAKDKDGYTPLHLA 42
>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease
Length = 285
Score = 28.1 bits (61), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 38/77 (49%), Gaps = 3/77 (3%)
Query: 7 AADKKSSASIACFLAGNGADLSIKNKKGQTPLDLCPDPNLCKALTKCYKDKEVDQIEPRV 66
++D +I L +GAD++++ ++G+TPL L + K L + E + IE
Sbjct: 192 SSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEK---KHLGLVQRLLEQEHIEIND 248
Query: 67 GEGDGTEDMVTLDECRI 83
+ DG ++ E ++
Sbjct: 249 TDSDGKTALLLAVELKL 265
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 27.7 bits (60), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 19 FLAGNGADLSIKNKKGQTPLDLC 41
L NGAD++ K+K G TPL L
Sbjct: 32 ILMANGADVNAKDKDGYTPLHLA 54
>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8K|B Chain B, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8L|A Chain A, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|B Chain B, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|C Chain C, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|D Chain D, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
Length = 337
Score = 27.7 bits (60), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 38/77 (49%), Gaps = 3/77 (3%)
Query: 7 AADKKSSASIACFLAGNGADLSIKNKKGQTPLDLCPDPNLCKALTKCYKDKEVDQIEPRV 66
++D +I L +GAD++++ ++G+TPL L + K L + E + IE
Sbjct: 212 SSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEK---KHLGLVQRLLEQEHIEIND 268
Query: 67 GEGDGTEDMVTLDECRI 83
+ DG ++ E ++
Sbjct: 269 TDSDGKTALLLAVELKL 285
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 27.7 bits (60), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 19 FLAGNGADLSIKNKKGQTPLDLC 41
L NGAD++ K+K G TPL L
Sbjct: 42 ILMANGADVAAKDKNGSTPLHLA 64
>pdb|2VJE|A Chain A, Crystal Structure Of The Mdm2-Mdmx Ring Domain Heterodimer
pdb|2VJE|C Chain C, Crystal Structure Of The Mdm2-Mdmx Ring Domain Heterodimer
pdb|2VJF|A Chain A, Crystal Structure Of The Mdm2-Mdmx Ring Domain Heterodimer
pdb|2VJF|C Chain C, Crystal Structure Of The Mdm2-Mdmx Ring Domain Heterodimer
Length = 64
Score = 27.7 bits (60), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 6/49 (12%)
Query: 78 LDECRICSDLKRD--ILFQPCGHVACCSVCAPRVKK----CLICREPVE 120
++ C IC ++ I+ GH+ C CA ++KK C +CR+P++
Sbjct: 8 IEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQ 56
>pdb|2VJE|B Chain B, Crystal Structure Of The Mdm2-Mdmx Ring Domain Heterodimer
pdb|2VJE|D Chain D, Crystal Structure Of The Mdm2-Mdmx Ring Domain Heterodimer
pdb|2VJF|B Chain B, Crystal Structure Of The Mdm2-Mdmx Ring Domain Heterodimer
pdb|2VJF|D Chain D, Crystal Structure Of The Mdm2-Mdmx Ring Domain Heterodimer
Length = 63
Score = 27.7 bits (60), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 6/54 (11%)
Query: 78 LDECRICSDLKRD--ILFQPCGHVACCSVCAPRVKK----CLICREPVEKRIKI 125
L C +C RD I+ GH+ C CA R+KK C IC++ ++ IK+
Sbjct: 7 LKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQLVIKV 60
>pdb|2HDP|A Chain A, Solution Structure Of Hdm2 Ring Finger Domain
pdb|2HDP|B Chain B, Solution Structure Of Hdm2 Ring Finger Domain
Length = 63
Score = 27.3 bits (59), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 6/49 (12%)
Query: 78 LDECRICSDLKRD--ILFQPCGHVACCSVCAPRVKK----CLICREPVE 120
++ C IC ++ I+ GH+ C CA ++KK C +CR+P++
Sbjct: 7 IEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQ 55
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.134 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,005,866
Number of Sequences: 62578
Number of extensions: 316996
Number of successful extensions: 972
Number of sequences better than 100.0: 53
Number of HSP's better than 100.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 863
Number of HSP's gapped (non-prelim): 119
length of query: 290
length of database: 14,973,337
effective HSP length: 98
effective length of query: 192
effective length of database: 8,840,693
effective search space: 1697413056
effective search space used: 1697413056
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)