Query psy7970
Match_columns 290
No_of_seqs 371 out of 1902
Neff 7.0
Searched_HMMs 46136
Date Fri Aug 16 23:30:40 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7970.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7970hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF13920 zf-C3HC4_3: Zinc fing 99.1 4.3E-11 9.3E-16 82.2 1.4 44 78-121 2-49 (50)
2 KOG4265|consensus 99.0 6.8E-11 1.5E-15 110.1 1.9 53 74-126 286-342 (349)
3 KOG4172|consensus 99.0 3.2E-11 6.8E-16 82.9 -1.5 49 78-126 7-60 (62)
4 KOG4275|consensus 98.9 3.6E-10 7.8E-15 102.5 0.9 51 76-126 298-348 (350)
5 PF13920 zf-C3HC4_3: Zinc fing 98.9 1.1E-09 2.5E-14 75.1 2.7 44 126-169 3-50 (50)
6 KOG4275|consensus 98.8 9.6E-10 2.1E-14 99.7 -0.7 49 125-173 300-348 (350)
7 PF15227 zf-C3HC4_4: zinc fing 98.8 1.8E-09 4E-14 71.5 0.5 33 247-279 1-42 (42)
8 KOG1571|consensus 98.7 4.1E-09 8.9E-14 98.4 2.1 59 68-126 295-353 (355)
9 PLN03208 E3 ubiquitin-protein 98.6 1.2E-08 2.5E-13 88.6 0.2 48 240-287 14-82 (193)
10 KOG4172|consensus 98.5 5.2E-09 1.1E-13 72.0 -3.1 48 126-173 8-60 (62)
11 KOG0823|consensus 98.4 8.9E-08 1.9E-12 84.7 1.1 48 243-290 46-103 (230)
12 KOG4265|consensus 98.4 1.4E-07 3.1E-12 88.1 1.6 49 126-174 291-343 (349)
13 PF13923 zf-C3HC4_2: Zinc fing 98.3 1.4E-07 3.1E-12 61.2 0.6 33 247-279 1-39 (39)
14 KOG0317|consensus 98.2 3.6E-07 7.8E-12 83.2 1.5 47 242-288 237-288 (293)
15 PF14835 zf-RING_6: zf-RING of 98.2 4.1E-07 9E-12 65.1 1.4 45 239-283 2-50 (65)
16 KOG0320|consensus 98.2 3.4E-07 7.3E-12 78.0 1.0 45 243-287 130-181 (187)
17 PHA02929 N1R/p28-like protein; 98.2 7.5E-07 1.6E-11 80.3 2.5 45 242-286 172-229 (238)
18 TIGR00599 rad18 DNA repair pro 98.2 5.3E-07 1.1E-11 86.8 1.4 49 237-285 19-72 (397)
19 smart00504 Ubox Modified RING 98.2 7.3E-07 1.6E-11 63.4 1.6 44 244-287 1-49 (63)
20 KOG0978|consensus 98.1 8.8E-07 1.9E-11 89.9 1.9 55 231-285 630-690 (698)
21 KOG1571|consensus 98.1 7.9E-07 1.7E-11 83.3 1.2 48 126-173 306-353 (355)
22 PHA02926 zinc finger-like prot 98.1 1.4E-06 3E-11 77.0 1.7 46 240-285 166-231 (242)
23 PF14634 zf-RING_5: zinc-RING 98.1 2E-06 4.3E-11 57.4 1.7 36 246-281 1-44 (44)
24 PF13639 zf-RING_2: Ring finge 98.0 1E-06 2.2E-11 58.6 0.2 35 246-280 2-44 (44)
25 KOG1100|consensus 98.0 2.3E-06 4.9E-11 75.8 2.3 47 80-126 160-206 (207)
26 PF00097 zf-C3HC4: Zinc finger 98.0 1.5E-06 3.2E-11 56.7 0.1 33 247-279 1-41 (41)
27 cd00162 RING RING-finger (Real 97.9 5.9E-06 1.3E-10 53.7 1.6 38 246-283 1-45 (45)
28 KOG0287|consensus 97.8 2.9E-06 6.3E-11 78.8 -0.4 45 241-285 20-69 (442)
29 KOG2164|consensus 97.8 5E-06 1.1E-10 81.1 1.1 44 244-287 186-239 (513)
30 COG5432 RAD18 RING-finger-cont 97.7 7.1E-06 1.5E-10 74.9 0.3 46 240-285 21-71 (391)
31 PF13445 zf-RING_UBOX: RING-ty 97.7 9.2E-06 2E-10 54.0 0.2 26 247-273 1-31 (43)
32 KOG1100|consensus 97.7 1.9E-05 4.2E-10 69.9 2.3 98 76-173 82-206 (207)
33 KOG0311|consensus 97.7 4.9E-06 1.1E-10 77.8 -2.0 53 234-286 33-92 (381)
34 smart00184 RING Ring finger. E 97.6 1.3E-05 2.9E-10 50.2 0.4 33 247-279 1-39 (39)
35 KOG0824|consensus 97.6 2.1E-05 4.6E-10 72.2 1.3 137 122-284 4-151 (324)
36 PF04564 U-box: U-box domain; 97.4 4.6E-05 1E-09 56.3 1.0 47 242-288 2-54 (73)
37 COG5574 PEX10 RING-finger-cont 97.4 4.3E-05 9.3E-10 69.1 1.0 41 243-283 214-261 (271)
38 PF14634 zf-RING_5: zinc-RING 97.4 0.0001 2.2E-09 49.0 2.5 28 136-164 13-44 (44)
39 PF13923 zf-C3HC4_2: Zinc fing 97.4 0.00011 2.4E-09 47.5 2.5 34 128-162 1-39 (39)
40 KOG0823|consensus 97.1 0.0003 6.6E-09 62.6 2.5 48 125-173 47-103 (230)
41 PLN03208 E3 ubiquitin-protein 97.0 0.00047 1E-08 60.2 2.5 48 125-173 18-87 (193)
42 smart00184 RING Ring finger. E 96.8 0.001 2.2E-08 41.3 2.7 34 128-162 1-39 (39)
43 PF13639 zf-RING_2: Ring finge 96.8 0.00068 1.5E-08 44.8 1.9 36 127-163 2-44 (44)
44 PF15227 zf-C3HC4_4: zinc fing 96.8 0.00085 1.8E-08 44.3 2.3 27 128-155 1-27 (42)
45 cd00162 RING RING-finger (Real 96.8 0.0013 2.9E-08 42.3 2.9 39 127-166 1-45 (45)
46 PF00097 zf-C3HC4: Zinc finger 96.7 0.0011 2.3E-08 43.0 2.0 34 128-162 1-41 (41)
47 KOG0320|consensus 96.7 0.0007 1.5E-08 58.0 1.3 44 125-169 131-180 (187)
48 PF12678 zf-rbx1: RING-H2 zinc 96.6 0.00076 1.6E-08 49.9 1.1 35 246-280 21-73 (73)
49 KOG0317|consensus 96.6 0.0011 2.3E-08 60.9 1.7 45 125-170 239-287 (293)
50 PHA02929 N1R/p28-like protein; 96.5 0.0018 3.9E-08 58.6 3.0 47 125-172 174-232 (238)
51 PF14447 Prok-RING_4: Prokaryo 96.3 0.0023 5E-08 44.5 1.7 43 126-169 8-52 (55)
52 KOG2660|consensus 96.3 0.001 2.2E-08 62.1 -0.1 51 237-287 8-64 (331)
53 PF13857 Ank_5: Ankyrin repeat 96.2 0.0012 2.6E-08 45.9 0.1 29 13-41 28-56 (56)
54 COG5574 PEX10 RING-finger-cont 96.2 0.0021 4.5E-08 58.3 1.5 40 126-166 216-261 (271)
55 PHA02926 zinc finger-like prot 96.0 0.0023 5E-08 56.8 0.7 47 124-171 169-234 (242)
56 KOG1785|consensus 95.9 0.0031 6.6E-08 60.3 1.1 48 126-174 370-423 (563)
57 KOG2879|consensus 95.9 0.0047 1E-07 56.4 2.1 43 242-284 237-287 (298)
58 KOG0297|consensus 95.8 0.0045 9.8E-08 60.0 2.1 46 241-286 18-69 (391)
59 KOG0978|consensus 95.8 0.0024 5.3E-08 65.3 0.1 42 125-167 643-689 (698)
60 COG5236 Uncharacterized conser 95.8 0.012 2.6E-07 55.4 4.3 49 72-121 55-109 (493)
61 KOG4159|consensus 95.7 0.0042 9E-08 60.2 1.3 45 241-285 81-130 (398)
62 KOG3002|consensus 95.7 0.0052 1.1E-07 57.4 1.9 43 243-285 47-92 (299)
63 PF13445 zf-RING_UBOX: RING-ty 95.7 0.006 1.3E-07 40.5 1.5 18 138-156 14-31 (43)
64 KOG2164|consensus 95.5 0.0077 1.7E-07 59.3 2.3 49 125-174 186-245 (513)
65 TIGR00599 rad18 DNA repair pro 95.5 0.0081 1.8E-07 58.2 2.4 43 125-168 26-72 (397)
66 KOG4692|consensus 95.5 0.0054 1.2E-07 57.8 1.0 43 126-169 423-469 (489)
67 PF14447 Prok-RING_4: Prokaryo 95.4 0.011 2.3E-07 41.2 1.9 43 78-121 7-51 (55)
68 smart00504 Ubox Modified RING 95.3 0.021 4.6E-07 40.1 3.4 40 127-167 3-46 (63)
69 KOG1039|consensus 95.2 0.0086 1.9E-07 56.9 1.5 46 242-287 159-224 (344)
70 KOG0802|consensus 95.2 0.0074 1.6E-07 60.9 1.0 42 242-283 289-340 (543)
71 KOG0824|consensus 94.9 0.012 2.7E-07 54.4 1.6 48 76-124 5-57 (324)
72 KOG4692|consensus 94.8 0.011 2.4E-07 55.7 0.8 45 242-286 420-469 (489)
73 KOG1785|consensus 94.7 0.0099 2.1E-07 56.9 0.4 58 228-285 349-417 (563)
74 TIGR00570 cdk7 CDK-activating 94.5 0.023 5E-07 53.1 2.4 43 78-121 3-55 (309)
75 PF11789 zf-Nse: Zinc-finger o 94.5 0.015 3.3E-07 40.9 0.8 37 242-278 9-53 (57)
76 COG5236 Uncharacterized conser 94.4 0.021 4.5E-07 53.8 1.9 44 125-169 61-110 (493)
77 TIGR00570 cdk7 CDK-activating 94.4 0.027 5.9E-07 52.7 2.6 26 142-168 25-55 (309)
78 PF12861 zf-Apc11: Anaphase-pr 94.2 0.024 5.3E-07 43.1 1.5 26 260-285 51-83 (85)
79 PF13637 Ank_4: Ankyrin repeat 94.2 0.013 2.9E-07 40.0 0.0 33 14-46 14-46 (54)
80 COG5152 Uncharacterized conser 94.1 0.014 3E-07 51.0 0.0 39 244-282 196-239 (259)
81 KOG0804|consensus 93.8 0.028 6E-07 54.6 1.4 43 242-284 173-222 (493)
82 KOG1814|consensus 93.8 0.028 6.1E-07 54.0 1.4 30 78-108 184-216 (445)
83 KOG1813|consensus 93.8 0.028 6.1E-07 51.9 1.3 39 245-283 242-285 (313)
84 PF14570 zf-RING_4: RING/Ubox 93.7 0.031 6.7E-07 38.0 1.1 37 247-283 1-47 (48)
85 COG5222 Uncharacterized conser 93.7 0.05 1.1E-06 50.4 2.8 37 245-281 275-318 (427)
86 COG5540 RING-finger-containing 93.7 0.029 6.3E-07 52.0 1.2 42 243-284 322-372 (374)
87 KOG4628|consensus 93.6 0.029 6.4E-07 53.3 1.2 40 246-285 231-279 (348)
88 KOG2177|consensus 93.4 0.023 4.9E-07 50.9 0.1 43 74-117 9-55 (386)
89 KOG0287|consensus 93.2 0.03 6.5E-07 52.6 0.5 43 125-168 23-69 (442)
90 COG5243 HRD1 HRD ubiquitin lig 93.1 0.056 1.2E-06 51.4 2.2 42 242-283 285-344 (491)
91 COG5432 RAD18 RING-finger-cont 93.0 0.05 1.1E-06 50.2 1.7 41 126-167 26-70 (391)
92 KOG2177|consensus 92.5 0.046 1E-06 48.8 0.7 40 124-164 12-55 (386)
93 PF12796 Ank_2: Ankyrin repeat 92.1 0.058 1.3E-06 40.1 0.8 43 14-56 39-81 (89)
94 KOG0804|consensus 92.1 0.16 3.4E-06 49.6 3.7 74 72-146 169-249 (493)
95 COG5175 MOT2 Transcriptional r 92.0 0.039 8.4E-07 51.9 -0.3 44 242-285 12-65 (480)
96 KOG0515|consensus 91.9 0.15 3.2E-06 50.8 3.4 43 14-56 596-638 (752)
97 PF12678 zf-rbx1: RING-H2 zinc 91.8 0.16 3.5E-06 37.4 2.8 27 136-163 43-73 (73)
98 KOG0825|consensus 91.5 0.042 9E-07 56.7 -0.8 45 243-287 122-174 (1134)
99 KOG0509|consensus 91.3 0.1 2.3E-06 52.6 1.7 48 9-56 120-167 (600)
100 KOG2113|consensus 91.2 0.21 4.7E-06 46.6 3.6 47 126-172 344-392 (394)
101 KOG3039|consensus 90.9 0.17 3.7E-06 45.8 2.5 48 242-289 219-275 (303)
102 KOG1814|consensus 90.9 0.15 3.3E-06 49.1 2.3 113 125-282 184-320 (445)
103 PHA02741 hypothetical protein; 90.6 0.23 5.1E-06 41.9 3.0 27 15-41 112-139 (169)
104 PF05290 Baculo_IE-1: Baculovi 89.9 0.11 2.5E-06 42.6 0.5 41 245-285 81-133 (140)
105 PF04641 Rtf2: Rtf2 RING-finge 89.7 0.2 4.4E-06 45.8 2.1 48 241-288 110-165 (260)
106 KOG2879|consensus 89.7 0.36 7.7E-06 44.4 3.5 52 68-120 229-287 (298)
107 KOG3002|consensus 89.5 0.27 5.9E-06 46.0 2.8 49 120-169 43-93 (299)
108 KOG4412|consensus 89.0 0.36 7.7E-06 42.2 2.9 41 14-54 119-159 (226)
109 KOG4159|consensus 88.9 0.2 4.3E-06 48.7 1.4 44 124-168 83-130 (398)
110 PF13857 Ank_5: Ankyrin repeat 88.6 0.06 1.3E-06 37.2 -1.7 36 20-55 1-37 (56)
111 KOG0508|consensus 88.5 0.29 6.4E-06 48.2 2.3 42 15-56 164-205 (615)
112 KOG2231|consensus 88.4 0.22 4.8E-06 51.1 1.4 87 80-168 2-126 (669)
113 KOG1002|consensus 88.2 0.16 3.4E-06 50.5 0.2 43 242-284 534-586 (791)
114 PHA02798 ankyrin-like protein; 87.6 0.28 6.1E-06 48.5 1.6 41 15-55 272-312 (489)
115 KOG4628|consensus 86.9 0.85 1.8E-05 43.5 4.3 46 79-125 230-283 (348)
116 PHA02736 Viral ankyrin protein 86.3 0.48 1E-05 39.0 2.1 40 15-54 72-112 (154)
117 PHA02743 Viral ankyrin protein 86.2 0.55 1.2E-05 39.6 2.4 35 17-51 76-111 (166)
118 PHA02795 ankyrin-like protein; 86.1 0.35 7.5E-06 47.7 1.3 45 14-58 201-245 (437)
119 PF02891 zf-MIZ: MIZ/SP-RING z 85.9 0.31 6.7E-06 33.3 0.6 39 244-282 2-50 (50)
120 KOG0505|consensus 85.7 0.76 1.6E-05 45.8 3.4 41 13-53 118-158 (527)
121 KOG1813|consensus 85.7 0.4 8.6E-06 44.5 1.4 45 125-170 241-289 (313)
122 PHA02736 Viral ankyrin protein 85.6 0.34 7.4E-06 39.9 0.8 40 15-54 106-146 (154)
123 PF14835 zf-RING_6: zf-RING of 85.5 0.51 1.1E-05 34.0 1.6 41 125-166 7-50 (65)
124 PHA03095 ankyrin-like protein; 85.4 0.43 9.2E-06 46.4 1.5 40 15-54 238-277 (471)
125 PHA02791 ankyrin-like protein; 84.9 0.46 9.9E-06 44.1 1.4 42 15-56 75-116 (284)
126 KOG1039|consensus 84.8 0.47 1E-05 45.2 1.5 47 125-172 161-226 (344)
127 KOG2932|consensus 84.7 0.45 9.8E-06 44.4 1.2 54 125-179 90-151 (389)
128 PHA02730 ankyrin-like protein; 84.5 0.56 1.2E-05 48.6 2.0 32 9-40 210-241 (672)
129 KOG1001|consensus 84.4 0.31 6.8E-06 50.5 0.1 41 245-286 455-502 (674)
130 COG5243 HRD1 HRD ubiquitin lig 84.2 0.62 1.3E-05 44.6 1.9 39 127-166 289-344 (491)
131 PHA02730 ankyrin-like protein; 83.8 0.5 1.1E-05 48.9 1.3 42 15-56 443-484 (672)
132 KOG0802|consensus 83.4 0.48 1E-05 47.9 1.0 40 125-165 291-339 (543)
133 PHA02743 Viral ankyrin protein 83.0 0.57 1.2E-05 39.5 1.1 27 16-42 39-65 (166)
134 PHA02989 ankyrin repeat protei 82.9 0.61 1.3E-05 46.2 1.4 27 16-42 271-297 (494)
135 PF04710 Pellino: Pellino; In 82.6 0.4 8.6E-06 46.2 0.0 82 87-169 300-403 (416)
136 PF10367 Vps39_2: Vacuolar sor 82.3 0.46 9.9E-06 36.7 0.2 32 240-271 74-108 (109)
137 PHA03100 ankyrin repeat protei 82.2 0.76 1.6E-05 44.9 1.8 41 14-54 230-270 (480)
138 KOG0195|consensus 81.8 1.2 2.5E-05 41.6 2.7 40 16-56 115-154 (448)
139 PF00023 Ank: Ankyrin repeat H 81.8 1.5 3.3E-05 26.5 2.5 20 13-32 14-33 (33)
140 COG5540 RING-finger-containing 81.8 1 2.3E-05 42.0 2.4 40 126-166 324-371 (374)
141 PHA02741 hypothetical protein; 81.2 0.83 1.8E-05 38.5 1.5 41 14-54 77-118 (169)
142 PF04564 U-box: U-box domain; 81.2 2 4.4E-05 31.4 3.3 44 125-169 4-52 (73)
143 PHA02859 ankyrin repeat protei 80.8 0.67 1.4E-05 40.7 0.8 28 14-41 103-130 (209)
144 PHA02946 ankyin-like protein; 80.5 0.84 1.8E-05 44.9 1.4 40 16-55 54-93 (446)
145 PF04641 Rtf2: Rtf2 RING-finge 80.4 1.6 3.5E-05 39.9 3.2 31 137-168 129-162 (260)
146 PHA02798 ankyrin-like protein; 79.8 0.92 2E-05 44.9 1.5 29 14-42 89-117 (489)
147 KOG0512|consensus 79.5 1.3 2.9E-05 38.5 2.1 41 14-54 143-184 (228)
148 KOG0508|consensus 79.4 1.7 3.6E-05 43.1 3.0 43 15-57 131-173 (615)
149 PTZ00322 6-phosphofructo-2-kin 79.1 1 2.2E-05 46.7 1.6 43 14-56 128-170 (664)
150 PHA02946 ankyin-like protein; 79.1 0.87 1.9E-05 44.8 1.1 30 15-44 189-218 (446)
151 PHA02874 ankyrin repeat protei 79.1 0.8 1.7E-05 44.4 0.8 29 14-42 268-296 (434)
152 KOG0195|consensus 79.0 1.7 3.8E-05 40.5 2.9 46 13-58 46-91 (448)
153 KOG4412|consensus 79.0 2.1 4.6E-05 37.5 3.2 36 19-54 90-126 (226)
154 KOG0509|consensus 79.0 1.6 3.5E-05 44.3 2.9 46 13-58 90-136 (600)
155 PHA02876 ankyrin repeat protei 78.7 1.2 2.6E-05 46.0 1.9 45 13-57 157-201 (682)
156 PHA02884 ankyrin repeat protei 78.4 1.2 2.7E-05 41.7 1.8 43 14-56 46-92 (300)
157 PHA02716 CPXV016; CPX019; EVM0 78.4 1.1 2.3E-05 47.3 1.5 27 17-43 518-544 (764)
158 PHA02878 ankyrin repeat protei 78.3 1.1 2.3E-05 44.2 1.4 32 14-45 50-81 (477)
159 PHA03095 ankyrin-like protein; 78.2 1.3 2.9E-05 43.0 2.0 32 13-44 201-232 (471)
160 KOG3039|consensus 78.1 2.5 5.5E-05 38.4 3.6 44 125-169 221-272 (303)
161 PHA02795 ankyrin-like protein; 78.0 1 2.2E-05 44.5 1.1 31 14-44 234-264 (437)
162 PHA02791 ankyrin-like protein; 77.6 1.5 3.2E-05 40.7 2.0 41 15-55 174-215 (284)
163 PHA02884 ankyrin repeat protei 77.4 0.99 2.2E-05 42.3 0.8 26 16-41 119-144 (300)
164 PLN03192 Voltage-dependent pot 77.3 1.6 3.4E-05 46.4 2.4 44 14-57 635-678 (823)
165 PHA02875 ankyrin repeat protei 77.3 1.4 3E-05 42.3 1.8 43 14-56 115-157 (413)
166 PHA02859 ankyrin repeat protei 76.9 1.4 3E-05 38.6 1.6 27 14-40 138-164 (209)
167 COG5152 Uncharacterized conser 76.7 0.84 1.8E-05 40.1 0.1 44 125-169 196-243 (259)
168 PHA02792 ankyrin-like protein; 76.5 1.6 3.5E-05 45.0 2.1 41 15-55 391-431 (631)
169 KOG3842|consensus 76.3 1.9 4.1E-05 40.5 2.3 79 87-169 313-416 (429)
170 KOG1734|consensus 76.1 0.92 2E-05 41.7 0.2 44 243-286 223-283 (328)
171 PHA02874 ankyrin repeat protei 74.4 1.6 3.5E-05 42.3 1.4 41 15-55 138-178 (434)
172 KOG2113|consensus 74.1 2.8 6.1E-05 39.4 2.8 52 74-125 339-392 (394)
173 KOG3800|consensus 73.9 1.9 4.1E-05 40.0 1.6 28 139-167 19-51 (300)
174 PHA02716 CPXV016; CPX019; EVM0 73.8 2 4.3E-05 45.4 2.0 29 15-43 193-221 (764)
175 PHA02875 ankyrin repeat protei 73.7 1.8 4E-05 41.4 1.6 43 14-56 148-190 (413)
176 PF13606 Ank_3: Ankyrin repeat 73.3 3.3 7.2E-05 24.8 2.1 17 13-29 14-30 (30)
177 KOG4362|consensus 73.2 1.8 3.9E-05 44.7 1.5 56 231-286 8-71 (684)
178 PHA02917 ankyrin-like protein; 73.2 2 4.3E-05 44.6 1.8 41 15-55 433-473 (661)
179 PHA02917 ankyrin-like protein; 72.4 2.3 4.9E-05 44.2 2.1 27 14-40 116-142 (661)
180 KOG2505|consensus 72.3 4 8.6E-05 40.7 3.5 39 16-54 445-483 (591)
181 PHA03100 ankyrin repeat protei 72.2 3.3 7.2E-05 40.3 3.1 42 15-56 87-130 (480)
182 KOG4214|consensus 72.1 2.8 6E-05 32.9 1.9 45 12-56 45-89 (117)
183 PHA02989 ankyrin repeat protei 71.1 2.6 5.6E-05 41.7 2.1 27 15-41 89-115 (494)
184 PHA02878 ankyrin repeat protei 70.8 3 6.5E-05 41.0 2.4 42 15-56 148-190 (477)
185 KOG2114|consensus 70.4 4.1 9E-05 42.9 3.3 54 228-281 818-880 (933)
186 COG0666 Arp FOG: Ankyrin repea 70.0 3 6.6E-05 34.8 2.0 43 14-56 124-169 (235)
187 PF11793 FANCL_C: FANCL C-term 69.5 1.1 2.4E-05 32.7 -0.7 41 244-284 2-66 (70)
188 KOG4367|consensus 67.8 2.2 4.8E-05 41.7 0.7 33 76-109 2-34 (699)
189 KOG1952|consensus 67.7 4.9 0.00011 42.4 3.2 40 243-282 190-245 (950)
190 KOG0505|consensus 67.3 5.9 0.00013 39.7 3.6 44 15-58 87-130 (527)
191 KOG0825|consensus 66.9 2.4 5.2E-05 44.3 0.8 30 140-170 141-174 (1134)
192 KOG4177|consensus 65.7 3.9 8.4E-05 44.8 2.1 43 15-57 554-596 (1143)
193 PHA02876 ankyrin repeat protei 65.6 3.1 6.8E-05 42.9 1.4 41 15-55 356-396 (682)
194 PLN03192 Voltage-dependent pot 65.6 3.6 7.8E-05 43.7 1.9 42 15-56 539-580 (823)
195 KOG4739|consensus 65.5 3.9 8.5E-05 36.9 1.8 39 128-167 6-48 (233)
196 PTZ00322 6-phosphofructo-2-kin 64.5 3.9 8.5E-05 42.4 1.8 42 15-56 96-137 (664)
197 PF12861 zf-Apc11: Anaphase-pr 64.3 5.8 0.00013 30.2 2.3 52 110-167 22-82 (85)
198 KOG2932|consensus 64.2 2.5 5.3E-05 39.7 0.3 29 258-286 106-136 (389)
199 KOG0826|consensus 64.2 3.2 7E-05 39.2 1.1 42 242-283 298-345 (357)
200 KOG0311|consensus 63.6 0.92 2E-05 43.1 -2.6 44 125-169 43-92 (381)
201 PHA03096 p28-like protein; Pro 63.4 4.2 9E-05 37.9 1.6 29 245-273 179-216 (284)
202 KOG0510|consensus 62.5 6.7 0.00015 41.4 3.1 43 15-57 102-144 (929)
203 KOG4367|consensus 60.6 4 8.7E-05 40.0 1.0 28 127-155 6-33 (699)
204 KOG0828|consensus 59.8 3.7 8.1E-05 40.8 0.7 44 241-284 568-634 (636)
205 PF10929 DUF2811: Protein of u 58.0 8.3 0.00018 27.1 2.0 17 10-26 28-44 (57)
206 KOG1001|consensus 57.0 4.5 9.8E-05 42.1 0.8 41 126-168 455-501 (674)
207 KOG0510|consensus 56.8 8.2 0.00018 40.7 2.5 30 15-44 391-420 (929)
208 cd00204 ANK ankyrin repeats; 56.5 6.8 0.00015 29.3 1.6 41 15-55 54-94 (126)
209 COG0666 Arp FOG: Ankyrin repea 55.4 15 0.00033 30.4 3.7 42 15-56 161-202 (235)
210 PHA02792 ankyrin-like protein; 55.0 12 0.00026 38.7 3.4 45 13-57 84-129 (631)
211 PF10571 UPF0547: Uncharacteri 54.9 10 0.00022 22.3 1.7 12 110-121 1-12 (26)
212 KOG3676|consensus 54.1 4.8 0.0001 42.2 0.4 27 15-41 254-280 (782)
213 PF07191 zinc-ribbons_6: zinc- 52.2 4.2 9E-05 29.9 -0.3 24 111-134 3-26 (70)
214 KOG1493|consensus 52.2 5 0.00011 30.0 0.1 42 243-284 30-81 (84)
215 KOG0828|consensus 50.4 5 0.00011 39.9 -0.1 56 110-166 572-633 (636)
216 PF02318 FYVE_2: FYVE-type zin 49.6 4 8.7E-05 32.7 -0.8 40 243-282 53-103 (118)
217 PF05883 Baculo_RING: Baculovi 49.5 7.7 0.00017 32.1 0.8 40 234-273 14-65 (134)
218 PF07015 VirC1: VirC1 protein; 48.2 15 0.00032 33.3 2.5 33 6-38 11-44 (231)
219 KOG4185|consensus 47.2 12 0.00026 34.5 1.9 38 245-282 208-265 (296)
220 COG5220 TFB3 Cdk activating ki 46.8 6 0.00013 35.9 -0.2 43 110-164 11-61 (314)
221 KOG0298|consensus 45.7 5.7 0.00012 43.8 -0.6 41 242-282 1151-1197(1394)
222 cd00204 ANK ankyrin repeats; 45.6 11 0.00024 28.1 1.2 42 14-55 20-61 (126)
223 PF10235 Cript: Microtubule-as 45.3 14 0.0003 28.5 1.6 37 244-284 44-80 (90)
224 KOG1812|consensus 45.1 9.5 0.00021 37.0 0.9 30 244-273 146-180 (384)
225 KOG4214|consensus 44.7 11 0.00024 29.7 1.0 36 15-50 81-116 (117)
226 KOG0521|consensus 43.7 11 0.00024 40.0 1.1 40 15-54 670-709 (785)
227 TIGR00870 trp transient-recept 43.7 4.7 0.0001 42.1 -1.6 31 14-44 188-218 (743)
228 KOG0818|consensus 42.9 12 0.00027 37.4 1.3 36 13-48 179-214 (669)
229 COG5219 Uncharacterized conser 40.2 8.1 0.00018 41.5 -0.5 45 240-284 1465-1523(1525)
230 COG5194 APC11 Component of SCF 40.1 15 0.00032 27.8 1.0 40 245-284 32-81 (88)
231 PF06906 DUF1272: Protein of u 39.5 25 0.00054 24.7 2.0 44 243-286 4-54 (57)
232 PF10497 zf-4CXXC_R1: Zinc-fin 39.4 18 0.0004 28.5 1.6 20 262-281 37-69 (105)
233 PF10272 Tmpp129: Putative tra 39.1 19 0.00041 34.7 1.8 44 242-285 269-352 (358)
234 KOG0502|consensus 38.2 38 0.00082 30.7 3.5 43 15-57 207-249 (296)
235 PF05290 Baculo_IE-1: Baculovi 38.1 17 0.00038 30.0 1.2 45 124-169 79-134 (140)
236 KOG1701|consensus 37.0 14 0.00031 36.2 0.7 87 80-166 304-404 (468)
237 KOG0502|consensus 36.1 17 0.00038 32.8 1.0 47 10-56 169-215 (296)
238 KOG1815|consensus 35.9 19 0.0004 35.6 1.3 32 242-273 68-101 (444)
239 PF03854 zf-P11: P-11 zinc fin 35.4 17 0.00036 24.7 0.6 41 246-287 4-49 (50)
240 KOG0801|consensus 35.4 21 0.00045 30.6 1.3 19 126-144 178-199 (205)
241 KOG2034|consensus 34.6 16 0.00034 38.9 0.6 45 228-272 801-848 (911)
242 KOG0522|consensus 34.1 17 0.00038 36.5 0.8 25 17-41 71-95 (560)
243 KOG3800|consensus 32.5 24 0.00051 32.9 1.3 24 95-119 22-50 (300)
244 PRK14559 putative protein seri 31.7 32 0.0007 35.7 2.3 54 110-174 2-59 (645)
245 KOG3676|consensus 30.9 31 0.00068 36.3 2.0 41 16-56 288-330 (782)
246 KOG4739|consensus 30.6 20 0.00044 32.4 0.5 30 90-120 17-48 (233)
247 cd00729 rubredoxin_SM Rubredox 28.5 27 0.00059 21.7 0.7 14 155-168 17-30 (34)
248 KOG2660|consensus 28.5 15 0.00033 34.7 -0.7 29 143-172 34-66 (331)
249 PF01363 FYVE: FYVE zinc finge 28.4 20 0.00043 25.4 0.1 31 242-272 7-42 (69)
250 KOG0297|consensus 28.3 34 0.00074 33.3 1.7 43 126-169 22-69 (391)
251 smart00744 RINGv The RING-vari 28.0 31 0.00066 23.2 0.9 35 246-280 1-49 (49)
252 PF03660 PHF5: PHF5-like prote 27.7 52 0.0011 26.0 2.3 45 111-161 29-88 (106)
253 KOG1428|consensus 27.7 51 0.0011 37.7 2.9 77 92-169 3453-3546(3738)
254 KOG0512|consensus 26.1 53 0.0012 28.8 2.3 40 15-54 111-150 (228)
255 PRK04690 murD UDP-N-acetylmura 24.9 45 0.00097 33.0 1.9 23 11-33 18-40 (468)
256 KOG1705|consensus 24.9 26 0.00056 27.1 0.2 33 79-116 28-62 (110)
257 COG0771 MurD UDP-N-acetylmuram 24.6 43 0.00093 33.3 1.6 30 1-36 13-42 (448)
258 PF04423 Rad50_zn_hook: Rad50 24.6 67 0.0014 21.8 2.2 26 230-255 5-31 (54)
259 PF12773 DZR: Double zinc ribb 24.4 68 0.0015 21.1 2.2 23 263-285 12-41 (50)
260 PF07975 C1_4: TFIIH C1-like d 24.4 56 0.0012 22.4 1.7 19 261-279 27-49 (51)
261 PF07800 DUF1644: Protein of u 23.9 45 0.00098 28.4 1.4 19 78-96 2-20 (162)
262 KOG4177|consensus 23.1 65 0.0014 35.7 2.8 37 15-51 256-292 (1143)
263 KOG3799|consensus 22.8 52 0.0011 27.3 1.5 41 241-283 62-117 (169)
264 PF10217 DUF2039: Uncharacteri 22.8 36 0.00078 26.3 0.6 37 125-166 55-91 (92)
265 KOG0507|consensus 22.6 39 0.00084 35.6 0.9 33 11-43 125-157 (854)
266 PRK03803 murD UDP-N-acetylmura 21.9 47 0.001 32.4 1.3 23 12-34 17-39 (448)
267 PF10272 Tmpp129: Putative tra 21.5 41 0.0009 32.4 0.9 20 75-94 268-287 (358)
268 KOG0782|consensus 21.5 59 0.0013 33.4 1.9 39 15-53 948-989 (1004)
269 PF00070 Pyr_redox: Pyridine n 21.4 1.3E+02 0.0028 21.5 3.4 45 11-57 9-53 (80)
270 cd00065 FYVE FYVE domain; Zinc 21.3 64 0.0014 21.6 1.6 29 245-273 3-36 (57)
271 KOG0520|consensus 21.3 63 0.0014 35.1 2.2 35 22-56 629-663 (975)
272 PF05605 zf-Di19: Drought indu 20.9 25 0.00055 23.9 -0.5 10 244-253 2-11 (54)
273 TIGR01087 murD UDP-N-acetylmur 20.9 46 0.00099 32.2 1.0 22 12-33 10-31 (433)
274 PRK00421 murC UDP-N-acetylmura 20.7 50 0.0011 32.4 1.3 22 12-33 18-40 (461)
275 TIGR02114 coaB_strep phosphopa 20.4 1.2E+02 0.0025 27.0 3.5 27 5-31 20-46 (227)
276 PF14569 zf-UDP: Zinc-binding 20.4 77 0.0017 23.8 1.9 43 243-285 8-63 (80)
No 1
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=99.07 E-value=4.3e-11 Score=82.18 Aligned_cols=44 Identities=50% Similarity=1.167 Sum_probs=39.4
Q ss_pred CCccccccccCcceEeecCCCcccccchhhhh----ccCCCCCCcchh
Q psy7970 78 LDECRICSDLKRDILFQPCGHVACCSVCAPRV----KKCLICREPVEK 121 (290)
Q Consensus 78 ~~~C~iC~~~~~~~~~~PCgH~~~C~~Ca~~~----~~Cp~Cr~~i~~ 121 (290)
+.+|.||+++.++++++||||..+|..|+.++ .+||+||++|.+
T Consensus 2 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~ 49 (50)
T PF13920_consen 2 DEECPICFENPRDVVLLPCGHLCFCEECAERLLKRKKKCPICRQPIES 49 (50)
T ss_dssp HSB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHHTTSBBTTTTBB-SE
T ss_pred cCCCccCCccCCceEEeCCCChHHHHHHhHHhcccCCCCCcCChhhcC
Confidence 46899999999999999999999999999988 899999999875
No 2
>KOG4265|consensus
Probab=99.04 E-value=6.8e-11 Score=110.14 Aligned_cols=53 Identities=38% Similarity=0.829 Sum_probs=47.3
Q ss_pred CCCCCCccccccccCcceEeecCCCcccccchhhhh----ccCCCCCCcchhhcccc
Q psy7970 74 DMVTLDECRICSDLKRDILFQPCGHVACCSVCAPRV----KKCLICREPVEKRIKIE 126 (290)
Q Consensus 74 ~~~~~~~C~iC~~~~~~~~~~PCgH~~~C~~Ca~~~----~~Cp~Cr~~i~~~~~i~ 126 (290)
++++..+|+||++..+|++++||+|.|+|..||..+ .+||+||++|...+.++
T Consensus 286 ~~~~gkeCVIClse~rdt~vLPCRHLCLCs~Ca~~Lr~q~n~CPICRqpi~~ll~i~ 342 (349)
T KOG4265|consen 286 ESESGKECVICLSESRDTVVLPCRHLCLCSGCAKSLRYQTNNCPICRQPIEELLEIY 342 (349)
T ss_pred cccCCCeeEEEecCCcceEEecchhhehhHhHHHHHHHhhcCCCccccchHhhheec
Confidence 446678999999999999999999999999999987 36999999999887754
No 3
>KOG4172|consensus
Probab=98.99 E-value=3.2e-11 Score=82.86 Aligned_cols=49 Identities=41% Similarity=0.882 Sum_probs=45.1
Q ss_pred CCccccccccCcceEeecCCCcccccchhhhhc-----cCCCCCCcchhhcccc
Q psy7970 78 LDECRICSDLKRDILFQPCGHVACCSVCAPRVK-----KCLICREPVEKRIKIE 126 (290)
Q Consensus 78 ~~~C~iC~~~~~~~~~~PCgH~~~C~~Ca~~~~-----~Cp~Cr~~i~~~~~i~ 126 (290)
..||.||++++.|.++.-|||++.|.+|+.+++ .||+||.+|...++.|
T Consensus 7 ~dECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~dvIkTY 60 (62)
T KOG4172|consen 7 SDECTICYEHPVDSVLYTCGHMCMCYACGLRLKKALHGCCPICRAPIKDVIKTY 60 (62)
T ss_pred ccceeeeccCcchHHHHHcchHHhHHHHHHHHHHccCCcCcchhhHHHHHHHhh
Confidence 379999999999999999999999999999984 6999999999888754
No 4
>KOG4275|consensus
Probab=98.89 E-value=3.6e-10 Score=102.46 Aligned_cols=51 Identities=37% Similarity=0.864 Sum_probs=47.6
Q ss_pred CCCCccccccccCcceEeecCCCcccccchhhhhccCCCCCCcchhhcccc
Q psy7970 76 VTLDECRICSDLKRDILFQPCGHVACCSVCAPRVKKCLICREPVEKRIKIE 126 (290)
Q Consensus 76 ~~~~~C~iC~~~~~~~~~~PCgH~~~C~~Ca~~~~~Cp~Cr~~i~~~~~i~ 126 (290)
.....|.||+|.++|.+|+||||++.|..|..+|..|||||+.|....+|+
T Consensus 298 ~~~~LC~ICmDaP~DCvfLeCGHmVtCt~CGkrm~eCPICRqyi~rvvrif 348 (350)
T KOG4275|consen 298 ATRRLCAICMDAPRDCVFLECGHMVTCTKCGKRMNECPICRQYIVRVVRIF 348 (350)
T ss_pred hHHHHHHHHhcCCcceEEeecCcEEeehhhccccccCchHHHHHHHHHhhh
Confidence 337789999999999999999999999999999999999999999888775
No 5
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.88 E-value=1.1e-09 Score=75.06 Aligned_cols=44 Identities=41% Similarity=0.911 Sum_probs=38.6
Q ss_pred cccccccccCCceEEeCCCCeecchhhHhcC----CCCCCCCcccccc
Q psy7970 126 EECMVCSLKKASVLFKPCYHMVACESCASLM----KKCVQCRTQIDHM 169 (290)
Q Consensus 126 ~~C~~C~~~~~~~~~~PCgH~~~C~~Ca~~~----~~Cp~Cr~~i~~~ 169 (290)
..|.+|++...+++++||||.++|..|+.++ ++||+||++|+++
T Consensus 3 ~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~V 50 (50)
T PF13920_consen 3 EECPICFENPRDVVLLPCGHLCFCEECAERLLKRKKKCPICRQPIESV 50 (50)
T ss_dssp SB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHHTTSBBTTTTBB-SEE
T ss_pred CCCccCCccCCceEEeCCCChHHHHHHhHHhcccCCCCCcCChhhcCC
Confidence 4799999999999999999999999999876 8999999998763
No 6
>KOG4275|consensus
Probab=98.77 E-value=9.6e-10 Score=99.72 Aligned_cols=49 Identities=29% Similarity=0.647 Sum_probs=46.7
Q ss_pred ccccccccccCCceEEeCCCCeecchhhHhcCCCCCCCCccccccccee
Q psy7970 125 IEECMVCSLKKASVLFKPCYHMVACESCASLMKKCVQCRTQIDHMHPMV 173 (290)
Q Consensus 125 i~~C~~C~~~~~~~~~~PCgH~~~C~~Ca~~~~~Cp~Cr~~i~~~~~~~ 173 (290)
-++|.||+|.+.+.+|++|||+++|..|+.+|..||+||+.|.++++||
T Consensus 300 ~~LC~ICmDaP~DCvfLeCGHmVtCt~CGkrm~eCPICRqyi~rvvrif 348 (350)
T KOG4275|consen 300 RRLCAICMDAPRDCVFLECGHMVTCTKCGKRMNECPICRQYIVRVVRIF 348 (350)
T ss_pred HHHHHHHhcCCcceEEeecCcEEeehhhccccccCchHHHHHHHHHhhh
Confidence 3699999999999999999999999999999999999999999998876
No 7
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=98.75 E-value=1.8e-09 Score=71.52 Aligned_cols=33 Identities=48% Similarity=1.266 Sum_probs=26.3
Q ss_pred cccccccccccccc-cCCccchHHHhcCC--------CCCCC
Q psy7970 247 CPVCLDRLKNMIFL-CGHGTCQMCGDRMS--------ECPIC 279 (290)
Q Consensus 247 C~IC~~~~~~~v~~-CGH~fC~~C~~~~~--------~CP~C 279 (290)
||||++++++||.+ |||+||..|+.++| .||.|
T Consensus 1 CpiC~~~~~~Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDPVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSEEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 89999999999886 99999999999763 47776
No 8
>KOG1571|consensus
Probab=98.73 E-value=4.1e-09 Score=98.44 Aligned_cols=59 Identities=31% Similarity=0.786 Sum_probs=53.2
Q ss_pred CCCCCCCCCCCCccccccccCcceEeecCCCcccccchhhhhccCCCCCCcchhhcccc
Q psy7970 68 EGDGTEDMVTLDECRICSDLKRDILFQPCGHVACCSVCAPRVKKCLICREPVEKRIKIE 126 (290)
Q Consensus 68 ~~~~~~~~~~~~~C~iC~~~~~~~~~~PCgH~~~C~~Ca~~~~~Cp~Cr~~i~~~~~i~ 126 (290)
+++...+.+....|+||++++.+++|+||||+++|..|+..+.+||+||+.|....+.|
T Consensus 295 ~~~~~~~~~~p~lcVVcl~e~~~~~fvpcGh~ccct~cs~~l~~CPvCR~rI~~~~k~y 353 (355)
T KOG1571|consen 295 ENGTFRELPQPDLCVVCLDEPKSAVFVPCGHVCCCTLCSKHLPQCPVCRQRIRLVRKRY 353 (355)
T ss_pred ccCcccccCCCCceEEecCCccceeeecCCcEEEchHHHhhCCCCchhHHHHHHHHHHh
Confidence 34556677888899999999999999999999999999999999999999999888765
No 9
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=98.57 E-value=1.2e-08 Score=88.63 Aligned_cols=48 Identities=29% Similarity=0.782 Sum_probs=40.6
Q ss_pred hccCCCccccccccccccccc-cCCccchHHHhcC--------------------CCCCCCcccccccc
Q psy7970 240 DIKEQTMCPVCLDRLKNMIFL-CGHGTCQMCGDRM--------------------SECPICRKAVEKRI 287 (290)
Q Consensus 240 ~l~e~~~C~IC~~~~~~~v~~-CGH~fC~~C~~~~--------------------~~CP~CR~~i~~~~ 287 (290)
+..++..|+||++.+++|+++ |||.||+.|+..| ..||.||..+....
T Consensus 14 ~~~~~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~ 82 (193)
T PLN03208 14 DSGGDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEAT 82 (193)
T ss_pred cCCCccCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhc
Confidence 445679999999999999775 9999999999865 26999999996643
No 10
>KOG4172|consensus
Probab=98.49 E-value=5.2e-09 Score=72.03 Aligned_cols=48 Identities=27% Similarity=0.645 Sum_probs=43.3
Q ss_pred cccccccccCCceEEeCCCCeecchhhHhcCC-----CCCCCCccccccccee
Q psy7970 126 EECMVCSLKKASVLFKPCYHMVACESCASLMK-----KCVQCRTQIDHMHPMV 173 (290)
Q Consensus 126 ~~C~~C~~~~~~~~~~PCgH~~~C~~Ca~~~~-----~Cp~Cr~~i~~~~~~~ 173 (290)
.+|.+|++.+.+.++.-|||++.|.+|+.+++ .||+||.+|.++++.|
T Consensus 8 dECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~dvIkTY 60 (62)
T KOG4172|consen 8 DECTICYEHPVDSVLYTCGHMCMCYACGLRLKKALHGCCPICRAPIKDVIKTY 60 (62)
T ss_pred cceeeeccCcchHHHHHcchHHhHHHHHHHHHHccCCcCcchhhHHHHHHHhh
Confidence 58999999999999999999999999998764 6999999999887643
No 11
>KOG0823|consensus
Probab=98.39 E-value=8.9e-08 Score=84.73 Aligned_cols=48 Identities=35% Similarity=0.730 Sum_probs=40.3
Q ss_pred CCCccccccccccccccc-cCCccchHHHhcCC-------CCCCCcccccc--cccCC
Q psy7970 243 EQTMCPVCLDRLKNMIFL-CGHGTCQMCGDRMS-------ECPICRKAVEK--RILLY 290 (290)
Q Consensus 243 e~~~C~IC~~~~~~~v~~-CGH~fC~~C~~~~~-------~CP~CR~~i~~--~~~~y 290 (290)
..+.|.||+|.-++||++ |||.||+.|+.+|. .||+|+..++. .+.||
T Consensus 46 ~~FdCNICLd~akdPVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvPlY 103 (230)
T KOG0823|consen 46 GFFDCNICLDLAKDPVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTVVPLY 103 (230)
T ss_pred CceeeeeeccccCCCEEeecccceehHHHHHHHhhcCCCeeCCccccccccceEEeee
Confidence 468999999999999775 99999999999983 69999998854 44444
No 12
>KOG4265|consensus
Probab=98.35 E-value=1.4e-07 Score=88.14 Aligned_cols=49 Identities=29% Similarity=0.807 Sum_probs=44.0
Q ss_pred cccccccccCCceEEeCCCCeecchhhHhcC----CCCCCCCcccccccceee
Q psy7970 126 EECMVCSLKKASVLFKPCYHMVACESCASLM----KKCVQCRTQIDHMHPMVV 174 (290)
Q Consensus 126 ~~C~~C~~~~~~~~~~PCgH~~~C~~Ca~~~----~~Cp~Cr~~i~~~~~~~~ 174 (290)
.+|+||+...++++++||.|++.|.+||..+ .+||+||++|+..+.+.+
T Consensus 291 keCVIClse~rdt~vLPCRHLCLCs~Ca~~Lr~q~n~CPICRqpi~~ll~i~~ 343 (349)
T KOG4265|consen 291 KECVICLSESRDTVVLPCRHLCLCSGCAKSLRYQTNNCPICRQPIEELLEIYV 343 (349)
T ss_pred CeeEEEecCCcceEEecchhhehhHhHHHHHHHhhcCCCccccchHhhheecc
Confidence 4899999999999999999999999999755 479999999999887743
No 13
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.32 E-value=1.4e-07 Score=61.21 Aligned_cols=33 Identities=42% Similarity=1.331 Sum_probs=26.6
Q ss_pred ccccccccccc-ccc-cCCccchHHHhcC----CCCCCC
Q psy7970 247 CPVCLDRLKNM-IFL-CGHGTCQMCGDRM----SECPIC 279 (290)
Q Consensus 247 C~IC~~~~~~~-v~~-CGH~fC~~C~~~~----~~CP~C 279 (290)
|+||++.+.+| +++ |||.||..|+.++ ..||+|
T Consensus 1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEKNPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHCTSB-TTT
T ss_pred CCCCCCcccCcCEECCCCCchhHHHHHHHHHCcCCCcCC
Confidence 89999999999 444 9999999999976 468876
No 14
>KOG0317|consensus
Probab=98.24 E-value=3.6e-07 Score=83.23 Aligned_cols=47 Identities=30% Similarity=0.683 Sum_probs=39.9
Q ss_pred cCCCcccccccccccc-ccccCCccchHHHhcCC----CCCCCccccccccc
Q psy7970 242 KEQTMCPVCLDRLKNM-IFLCGHGTCQMCGDRMS----ECPICRKAVEKRIL 288 (290)
Q Consensus 242 ~e~~~C~IC~~~~~~~-v~~CGH~fC~~C~~~~~----~CP~CR~~i~~~~~ 288 (290)
+....|.+|++...+| .++|||.||++|+..|- .||.||..+.....
T Consensus 237 ~a~~kC~LCLe~~~~pSaTpCGHiFCWsCI~~w~~ek~eCPlCR~~~~pskv 288 (293)
T KOG0317|consen 237 EATRKCSLCLENRSNPSATPCGHIFCWSCILEWCSEKAECPLCREKFQPSKV 288 (293)
T ss_pred CCCCceEEEecCCCCCCcCcCcchHHHHHHHHHHccccCCCcccccCCCcce
Confidence 4458999999999999 45699999999999983 79999999865443
No 15
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=98.23 E-value=4.1e-07 Score=65.08 Aligned_cols=45 Identities=36% Similarity=0.841 Sum_probs=26.8
Q ss_pred HhccCCCccccccccccccccc--cCCccchHHHhcC--CCCCCCcccc
Q psy7970 239 QDIKEQTMCPVCLDRLKNMIFL--CGHGTCQMCGDRM--SECPICRKAV 283 (290)
Q Consensus 239 ~~l~e~~~C~IC~~~~~~~v~~--CGH~fC~~C~~~~--~~CP~CR~~i 283 (290)
+.+++-+.|++|.+.++.||.+ |.|.||+.|+.+- ..||.|+.|-
T Consensus 2 ~~le~lLrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~~~CPvC~~Pa 50 (65)
T PF14835_consen 2 ERLEELLRCSICFDILKEPVCLGGCEHIFCSSCIRDCIGSECPVCHTPA 50 (65)
T ss_dssp HHHHHTTS-SSS-S--SS-B---SSS--B-TTTGGGGTTTB-SSS--B-
T ss_pred hHHHHhcCCcHHHHHhcCCceeccCccHHHHHHhHHhcCCCCCCcCChH
Confidence 4567779999999999999753 9999999999976 4799999886
No 16
>KOG0320|consensus
Probab=98.23 E-value=3.4e-07 Score=78.02 Aligned_cols=45 Identities=33% Similarity=0.897 Sum_probs=37.3
Q ss_pred CCCccccccccccccc-c-c-cCCccchHHHhcC----CCCCCCcccccccc
Q psy7970 243 EQTMCPVCLDRLKNMI-F-L-CGHGTCQMCGDRM----SECPICRKAVEKRI 287 (290)
Q Consensus 243 e~~~C~IC~~~~~~~v-~-~-CGH~fC~~C~~~~----~~CP~CR~~i~~~~ 287 (290)
.-..|||||+-+..-+ + . |||.||+.|+... ..||+||+.|+.+.
T Consensus 130 ~~~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk~~~~CP~C~kkIt~k~ 181 (187)
T KOG0320|consen 130 GTYKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALKNTNKCPTCRKKITHKQ 181 (187)
T ss_pred cccCCCceecchhhccccccccchhHHHHHHHHHHHhCCCCCCcccccchhh
Confidence 4489999999887764 3 3 9999999999975 47999999987755
No 17
>PHA02929 N1R/p28-like protein; Provisional
Probab=98.19 E-value=7.5e-07 Score=80.28 Aligned_cols=45 Identities=27% Similarity=0.755 Sum_probs=36.8
Q ss_pred cCCCcccccccccccc--------ccc-cCCccchHHHhcCC----CCCCCccccccc
Q psy7970 242 KEQTMCPVCLDRLKNM--------IFL-CGHGTCQMCGDRMS----ECPICRKAVEKR 286 (290)
Q Consensus 242 ~e~~~C~IC~~~~~~~--------v~~-CGH~fC~~C~~~~~----~CP~CR~~i~~~ 286 (290)
..+..|+||++.+.++ +++ |||.||..|+..|. .||+||.++...
T Consensus 172 ~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~tCPlCR~~~~~v 229 (238)
T PHA02929 172 SKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRTPFISV 229 (238)
T ss_pred CCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCCCCCCCCCEeeEE
Confidence 4578999999987653 344 99999999999873 799999998654
No 18
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.18 E-value=5.3e-07 Score=86.76 Aligned_cols=49 Identities=27% Similarity=0.712 Sum_probs=42.2
Q ss_pred HHHhccCCCccccccccccccccc-cCCccchHHHhcCC----CCCCCcccccc
Q psy7970 237 QLQDIKEQTMCPVCLDRLKNMIFL-CGHGTCQMCGDRMS----ECPICRKAVEK 285 (290)
Q Consensus 237 ~~~~l~e~~~C~IC~~~~~~~v~~-CGH~fC~~C~~~~~----~CP~CR~~i~~ 285 (290)
.++.++..+.|+||++.+.+|+++ |||.||..|+..++ .||.||..+..
T Consensus 19 ~l~~Le~~l~C~IC~d~~~~PvitpCgH~FCs~CI~~~l~~~~~CP~Cr~~~~~ 72 (397)
T TIGR00599 19 SLYPLDTSLRCHICKDFFDVPVLTSCSHTFCSLCIRRCLSNQPKCPLCRAEDQE 72 (397)
T ss_pred cccccccccCCCcCchhhhCccCCCCCCchhHHHHHHHHhCCCCCCCCCCcccc
Confidence 345678889999999999999775 99999999999753 69999998854
No 19
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=98.17 E-value=7.3e-07 Score=63.45 Aligned_cols=44 Identities=16% Similarity=0.378 Sum_probs=38.1
Q ss_pred CCccccccccccccccc-cCCccchHHHhcCC----CCCCCcccccccc
Q psy7970 244 QTMCPVCLDRLKNMIFL-CGHGTCQMCGDRMS----ECPICRKAVEKRI 287 (290)
Q Consensus 244 ~~~C~IC~~~~~~~v~~-CGH~fC~~C~~~~~----~CP~CR~~i~~~~ 287 (290)
++.||||.+.+.+|+.. |||+||+.|+..++ .||+|++++....
T Consensus 1 ~~~Cpi~~~~~~~Pv~~~~G~v~~~~~i~~~~~~~~~cP~~~~~~~~~~ 49 (63)
T smart00504 1 EFLCPISLEVMKDPVILPSGQTYERRAIEKWLLSHGTDPVTGQPLTHED 49 (63)
T ss_pred CcCCcCCCCcCCCCEECCCCCEEeHHHHHHHHHHCCCCCCCcCCCChhh
Confidence 36899999999999775 99999999999773 7999999986544
No 20
>KOG0978|consensus
Probab=98.14 E-value=8.8e-07 Score=89.86 Aligned_cols=55 Identities=33% Similarity=0.706 Sum_probs=48.6
Q ss_pred HHHHHHHHHhccCCCccccccccccccccc-cCCccchHHHhcC-----CCCCCCcccccc
Q psy7970 231 IQKLQQQLQDIKEQTMCPVCLDRLKNMIFL-CGHGTCQMCGDRM-----SECPICRKAVEK 285 (290)
Q Consensus 231 ~~~l~~~~~~l~e~~~C~IC~~~~~~~v~~-CGH~fC~~C~~~~-----~~CP~CR~~i~~ 285 (290)
-..|.++++..++.+.||+|-+.+++.|++ |||.||..|+... +.||.|..+|..
T Consensus 630 d~~L~EElk~yK~~LkCs~Cn~R~Kd~vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFga 690 (698)
T KOG0978|consen 630 DEVLAEELKEYKELLKCSVCNTRWKDAVITKCGHVFCEECVQTRYETRQRKCPKCNAAFGA 690 (698)
T ss_pred cHHHHHHHHHHHhceeCCCccCchhhHHHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCc
Confidence 345778888889999999999999999887 9999999999965 589999999954
No 21
>KOG1571|consensus
Probab=98.12 E-value=7.9e-07 Score=83.30 Aligned_cols=48 Identities=29% Similarity=0.728 Sum_probs=45.1
Q ss_pred cccccccccCCceEEeCCCCeecchhhHhcCCCCCCCCccccccccee
Q psy7970 126 EECMVCSLKKASVLFKPCYHMVACESCASLMKKCVQCRTQIDHMHPMV 173 (290)
Q Consensus 126 ~~C~~C~~~~~~~~~~PCgH~~~C~~Ca~~~~~Cp~Cr~~i~~~~~~~ 173 (290)
..|.||.+.+.+++|+||||++.|..|+..+.+||.||+.|....+.|
T Consensus 306 ~lcVVcl~e~~~~~fvpcGh~ccct~cs~~l~~CPvCR~rI~~~~k~y 353 (355)
T KOG1571|consen 306 DLCVVCLDEPKSAVFVPCGHVCCCTLCSKHLPQCPVCRQRIRLVRKRY 353 (355)
T ss_pred CceEEecCCccceeeecCCcEEEchHHHhhCCCCchhHHHHHHHHHHh
Confidence 599999999999999999999999999999999999999999887764
No 22
>PHA02926 zinc finger-like protein; Provisional
Probab=98.08 E-value=1.4e-06 Score=76.96 Aligned_cols=46 Identities=24% Similarity=0.680 Sum_probs=36.3
Q ss_pred hccCCCccccccccccc---------cccc-cCCccchHHHhcCC----------CCCCCcccccc
Q psy7970 240 DIKEQTMCPVCLDRLKN---------MIFL-CGHGTCQMCGDRMS----------ECPICRKAVEK 285 (290)
Q Consensus 240 ~l~e~~~C~IC~~~~~~---------~v~~-CGH~fC~~C~~~~~----------~CP~CR~~i~~ 285 (290)
+..++..|+||++...+ .+++ |+|.||..|+..|. .||+||..+..
T Consensus 166 ~~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~ 231 (242)
T PHA02926 166 RVSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFRN 231 (242)
T ss_pred hccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceeee
Confidence 33567899999997533 2454 99999999999884 29999999865
No 23
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.05 E-value=2e-06 Score=57.39 Aligned_cols=36 Identities=36% Similarity=1.044 Sum_probs=29.2
Q ss_pred cccccccccc---cccc-ccCCccchHHHhcCC----CCCCCcc
Q psy7970 246 MCPVCLDRLK---NMIF-LCGHGTCQMCGDRMS----ECPICRK 281 (290)
Q Consensus 246 ~C~IC~~~~~---~~v~-~CGH~fC~~C~~~~~----~CP~CR~ 281 (290)
.|+||++.+. .+.+ .|||.||..|+..+. .||+||+
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLKGKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhcCCCCCCcCCCC
Confidence 4899999882 2333 499999999999876 8999985
No 24
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=98.05 E-value=1e-06 Score=58.64 Aligned_cols=35 Identities=34% Similarity=1.023 Sum_probs=28.0
Q ss_pred ccccccccccc--ccc--ccCCccchHHHhcC----CCCCCCc
Q psy7970 246 MCPVCLDRLKN--MIF--LCGHGTCQMCGDRM----SECPICR 280 (290)
Q Consensus 246 ~C~IC~~~~~~--~v~--~CGH~fC~~C~~~~----~~CP~CR 280 (290)
.|+||++.+.+ .++ .|||.|+..|+..| ..||+||
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRNNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhCCcCCccC
Confidence 69999999854 233 49999999999988 4799997
No 25
>KOG1100|consensus
Probab=98.04 E-value=2.3e-06 Score=75.83 Aligned_cols=47 Identities=30% Similarity=0.930 Sum_probs=43.2
Q ss_pred ccccccccCcceEeecCCCcccccchhhhhccCCCCCCcchhhcccc
Q psy7970 80 ECRICSDLKRDILFQPCGHVACCSVCAPRVKKCLICREPVEKRIKIE 126 (290)
Q Consensus 80 ~C~iC~~~~~~~~~~PCgH~~~C~~Ca~~~~~Cp~Cr~~i~~~~~i~ 126 (290)
.|..|..+.+.++++||.|.++|..|...++.||+|+.++.+.+.++
T Consensus 160 ~Cr~C~~~~~~VlllPCrHl~lC~~C~~~~~~CPiC~~~~~s~~~v~ 206 (207)
T KOG1100|consen 160 SCRKCGEREATVLLLPCRHLCLCGICDESLRICPICRSPKTSSVEVN 206 (207)
T ss_pred cceecCcCCceEEeecccceEecccccccCccCCCCcChhhceeecc
Confidence 39999999999999999999999999998999999999998876543
No 26
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=97.98 E-value=1.5e-06 Score=56.74 Aligned_cols=33 Identities=39% Similarity=1.260 Sum_probs=28.5
Q ss_pred cccccccccccc-cc-cCCccchHHHhcCC------CCCCC
Q psy7970 247 CPVCLDRLKNMI-FL-CGHGTCQMCGDRMS------ECPIC 279 (290)
Q Consensus 247 C~IC~~~~~~~v-~~-CGH~fC~~C~~~~~------~CP~C 279 (290)
|+||++.+.+++ ++ |||.||..|+.+++ .||.|
T Consensus 1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 899999999997 54 99999999999763 58876
No 27
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=97.88 E-value=5.9e-06 Score=53.74 Aligned_cols=38 Identities=39% Similarity=1.184 Sum_probs=31.0
Q ss_pred cccccccccccccc-c-cCCccchHHHhcC-----CCCCCCcccc
Q psy7970 246 MCPVCLDRLKNMIF-L-CGHGTCQMCGDRM-----SECPICRKAV 283 (290)
Q Consensus 246 ~C~IC~~~~~~~v~-~-CGH~fC~~C~~~~-----~~CP~CR~~i 283 (290)
.|+||++.+.+++. . |||.||..|+..| ..||.||..+
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhhhCceEecCCCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence 48999999966643 4 9999999999865 3699998753
No 28
>KOG0287|consensus
Probab=97.85 E-value=2.9e-06 Score=78.85 Aligned_cols=45 Identities=22% Similarity=0.755 Sum_probs=39.0
Q ss_pred ccCCCccccccccccccccc-cCCccchHHHhcC----CCCCCCcccccc
Q psy7970 241 IKEQTMCPVCLDRLKNMIFL-CGHGTCQMCGDRM----SECPICRKAVEK 285 (290)
Q Consensus 241 l~e~~~C~IC~~~~~~~v~~-CGH~fC~~C~~~~----~~CP~CR~~i~~ 285 (290)
|..-+.|-||.++|+.|++. |||+||..||+.. ..||.|+.+++.
T Consensus 20 lD~lLRC~IC~eyf~ip~itpCsHtfCSlCIR~~L~~~p~CP~C~~~~~E 69 (442)
T KOG0287|consen 20 LDDLLRCGICFEYFNIPMITPCSHTFCSLCIRKFLSYKPQCPTCCVTVTE 69 (442)
T ss_pred hHHHHHHhHHHHHhcCceeccccchHHHHHHHHHhccCCCCCceecccch
Confidence 34558999999999999775 9999999999976 379999999865
No 29
>KOG2164|consensus
Probab=97.84 E-value=5e-06 Score=81.12 Aligned_cols=44 Identities=32% Similarity=0.735 Sum_probs=38.4
Q ss_pred CCccccccccccccccc-cCCccchHHHhcCC---------CCCCCcccccccc
Q psy7970 244 QTMCPVCLDRLKNMIFL-CGHGTCQMCGDRMS---------ECPICRKAVEKRI 287 (290)
Q Consensus 244 ~~~C~IC~~~~~~~v~~-CGH~fC~~C~~~~~---------~CP~CR~~i~~~~ 287 (290)
+..||||++...-|+.+ |||.||..|+...| .||+||..|..+.
T Consensus 186 ~~~CPICL~~~~~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kd 239 (513)
T KOG2164|consen 186 DMQCPICLEPPSVPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKD 239 (513)
T ss_pred CCcCCcccCCCCcccccccCceeeHHHHHHHHhhhcccCCccCCchhhhccccc
Confidence 78999999999998775 99999999998653 6999999997644
No 30
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=97.74 E-value=7.1e-06 Score=74.87 Aligned_cols=46 Identities=28% Similarity=0.662 Sum_probs=38.8
Q ss_pred hccCCCccccccccccccccc-cCCccchHHHhcC----CCCCCCcccccc
Q psy7970 240 DIKEQTMCPVCLDRLKNMIFL-CGHGTCQMCGDRM----SECPICRKAVEK 285 (290)
Q Consensus 240 ~l~e~~~C~IC~~~~~~~v~~-CGH~fC~~C~~~~----~~CP~CR~~i~~ 285 (290)
.|...+.|-||.++++.|+.. |||+||+.||.+. ..||.||..+..
T Consensus 21 ~LDs~lrC~IC~~~i~ip~~TtCgHtFCslCIR~hL~~qp~CP~Cr~~~~e 71 (391)
T COG5432 21 GLDSMLRCRICDCRISIPCETTCGHTFCSLCIRRHLGTQPFCPVCREDPCE 71 (391)
T ss_pred cchhHHHhhhhhheeecceecccccchhHHHHHHHhcCCCCCccccccHHh
Confidence 345568999999999999775 9999999999976 379999988643
No 31
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=97.70 E-value=9.2e-06 Score=54.04 Aligned_cols=26 Identities=31% Similarity=0.985 Sum_probs=17.2
Q ss_pred cccccccccc----ccc-ccCCccchHHHhcC
Q psy7970 247 CPVCLDRLKN----MIF-LCGHGTCQMCGDRM 273 (290)
Q Consensus 247 C~IC~~~~~~----~v~-~CGH~fC~~C~~~~ 273 (290)
||||.+ +.+ |+. .|||+||+.|+.++
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l 31 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKL 31 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHH
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHH
Confidence 899999 777 655 59999999999876
No 32
>KOG1100|consensus
Probab=97.69 E-value=1.9e-05 Score=69.94 Aligned_cols=98 Identities=18% Similarity=0.342 Sum_probs=73.0
Q ss_pred CCCCccccccccCcceEeecCCCcccccchhhhhccCCCCC--Ccchhh-------------------------cccccc
Q psy7970 76 VTLDECRICSDLKRDILFQPCGHVACCSVCAPRVKKCLICR--EPVEKR-------------------------IKIEEC 128 (290)
Q Consensus 76 ~~~~~C~iC~~~~~~~~~~PCgH~~~C~~Ca~~~~~Cp~Cr--~~i~~~-------------------------~~i~~C 128 (290)
.....+.++.+.+.-..+.+++|...+..++...+.++.+. +++..+ .....|
T Consensus 82 l~~~~~~~~~e~~~w~~~a~~ne~~~~~l~~nl~q~~~~~~~~~~~~~~~~~~~g~~~~~~~~s~~~~~~~~~~~~~~~C 161 (207)
T KOG1100|consen 82 LEERVKSLYVEAQIWRDRAQTNEATVNSLRTNLDQVLAQCPASAPAEERGQKSCGDREADDGKSSYVDPSVDNFKRMRSC 161 (207)
T ss_pred ehhhhhhhhhhHHHHHHHHHhChHHHHHHHHHHHHHHHhcccccCchhhhccccCccccccccccccchhhhhhhccccc
Confidence 34456677777777777778888887777777666666661 011000 111249
Q ss_pred ccccccCCceEEeCCCCeecchhhHhcCCCCCCCCccccccccee
Q psy7970 129 MVCSLKKASVLFKPCYHMVACESCASLMKKCVQCRTQIDHMHPMV 173 (290)
Q Consensus 129 ~~C~~~~~~~~~~PCgH~~~C~~Ca~~~~~Cp~Cr~~i~~~~~~~ 173 (290)
..|....+.|+++||.|++.|..|....+.||+|+.+....+.++
T Consensus 162 r~C~~~~~~VlllPCrHl~lC~~C~~~~~~CPiC~~~~~s~~~v~ 206 (207)
T KOG1100|consen 162 RKCGEREATVLLLPCRHLCLCGICDESLRICPICRSPKTSSVEVN 206 (207)
T ss_pred eecCcCCceEEeecccceEecccccccCccCCCCcChhhceeecc
Confidence 999999999999999999999999988899999999988776553
No 33
>KOG0311|consensus
Probab=97.66 E-value=4.9e-06 Score=77.76 Aligned_cols=53 Identities=34% Similarity=0.709 Sum_probs=44.5
Q ss_pred HHHHHHhccCCCccccccccccccccc--cCCccchHHHhcC-----CCCCCCccccccc
Q psy7970 234 LQQQLQDIKEQTMCPVCLDRLKNMIFL--CGHGTCQMCGDRM-----SECPICRKAVEKR 286 (290)
Q Consensus 234 l~~~~~~l~e~~~C~IC~~~~~~~v~~--CGH~fC~~C~~~~-----~~CP~CR~~i~~~ 286 (290)
..-.++.+.-+++||||+++++..++. |+|.||..||... ..||.||+....+
T Consensus 33 i~~~l~~~~~~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~Sk 92 (381)
T KOG0311|consen 33 IMVDLAMFDIQVICPICLSLLKKTMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSK 92 (381)
T ss_pred heecHHHhhhhhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhcccc
Confidence 445667778899999999999999664 9999999999854 4799999988554
No 34
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=97.65 E-value=1.3e-05 Score=50.19 Aligned_cols=33 Identities=48% Similarity=1.323 Sum_probs=27.6
Q ss_pred cccccccccccccc-cCCccchHHHhcC-----CCCCCC
Q psy7970 247 CPVCLDRLKNMIFL-CGHGTCQMCGDRM-----SECPIC 279 (290)
Q Consensus 247 C~IC~~~~~~~v~~-CGH~fC~~C~~~~-----~~CP~C 279 (290)
|+||++...+++++ |||.||..|+..| ..||.|
T Consensus 1 C~iC~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKDPVVLPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCCCCcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 78999998888665 9999999999865 358876
No 35
>KOG0824|consensus
Probab=97.61 E-value=2.1e-05 Score=72.20 Aligned_cols=137 Identities=20% Similarity=0.415 Sum_probs=82.0
Q ss_pred hccccccccccccCCceEEeCCCCeecchhhHh-----cCCCCCCCCcccccccceeeecCCCCccccccCCCChhhhhh
Q psy7970 122 RIKIEECMVCSLKKASVLFKPCYHMVACESCAS-----LMKKCVQCRTQIDHMHPMVVCCGGPGIISEVQHTTDPAEEEN 196 (290)
Q Consensus 122 ~~~i~~C~~C~~~~~~~~~~PCgH~~~C~~Ca~-----~~~~Cp~Cr~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~n 196 (290)
+.+..+|.+|+......+.+||+|. +|..|.. .++.|++||.+|++.+-... +.+ ++..
T Consensus 4 ~~~~~eC~IC~nt~n~Pv~l~C~Hk-FCyiCiKGsy~ndk~~CavCR~pids~i~~~p------------sl~---~~LK 67 (324)
T KOG0824|consen 4 RTKKKECLICYNTGNCPVNLYCFHK-FCYICIKGSYKNDKKTCAVCRFPIDSTIDFEP------------SLK---YRLK 67 (324)
T ss_pred cccCCcceeeeccCCcCccccccch-hhhhhhcchhhcCCCCCceecCCCCcchhcch------------hhh---hhhc
Confidence 3445699999999999999999999 9999995 35679999999988643200 000 1111
Q ss_pred hhccCCCCccchhhhccccccccccCCCCCChhHHHHHHHHHHhccCCCccccccccccccccc--cCCccchHHHhcCC
Q psy7970 197 AVALSPNTSAATLVEASTSGALMNNGSRDTSTSDIQKLQQQLQDIKEQTMCPVCLDRLKNMIFL--CGHGTCQMCGDRMS 274 (290)
Q Consensus 197 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~l~e~~~C~IC~~~~~~~v~~--CGH~fC~~C~~~~~ 274 (290)
++++.... + +..++.. ...+.+.++..++...-...+.-.|-+|...+.-|... |+|.||..|-..+.
T Consensus 68 ~n~p~~~~-~-------t~~~~~r--ag~n~nqnvp~~~~dA~~~~~~~~~~~~~g~l~vpt~~qg~w~qf~~~~p~~~~ 137 (324)
T KOG0824|consen 68 PNTPEVKR-I-------TRSQAKR--AGVNGNQNVPYMKEDAGFQQDHDICYICYGKLTVPTRIQGCWHQFCYVCPKSNF 137 (324)
T ss_pred CCCCCCCc-c-------cccHHhh--hhhhccCCcchhhhhccccCCccceeeeeeeEEecccccCceeeeeecCCchhh
Confidence 11100000 0 0000000 00111222222333333445667888999988888663 99999998877663
Q ss_pred ----CCCCCccccc
Q psy7970 275 ----ECPICRKAVE 284 (290)
Q Consensus 275 ----~CP~CR~~i~ 284 (290)
.||.|+..+.
T Consensus 138 ~~~~~~~d~~~~~~ 151 (324)
T KOG0824|consen 138 AMGNDCPDCRGKIS 151 (324)
T ss_pred hhhhccchhhcCcC
Confidence 5777776543
No 36
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=97.44 E-value=4.6e-05 Score=56.34 Aligned_cols=47 Identities=19% Similarity=0.424 Sum_probs=35.8
Q ss_pred cCCCccccccccccccccc-cCCccchHHHhcC-----CCCCCCccccccccc
Q psy7970 242 KEQTMCPVCLDRLKNMIFL-CGHGTCQMCGDRM-----SECPICRKAVEKRIL 288 (290)
Q Consensus 242 ~e~~~C~IC~~~~~~~v~~-CGH~fC~~C~~~~-----~~CP~CR~~i~~~~~ 288 (290)
-+.+.|||+.+++.+||+. +||+|.+.++..| ..||++++++....+
T Consensus 2 P~~f~CpIt~~lM~dPVi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~~l 54 (73)
T PF04564_consen 2 PDEFLCPITGELMRDPVILPSGHTYERSAIERWLEQNGGTDPFTRQPLSESDL 54 (73)
T ss_dssp SGGGB-TTTSSB-SSEEEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SGGGS
T ss_pred CcccCCcCcCcHhhCceeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCcccc
Confidence 3678999999999999885 9999999999977 369999999877554
No 37
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.44 E-value=4.3e-05 Score=69.07 Aligned_cols=41 Identities=32% Similarity=0.601 Sum_probs=35.8
Q ss_pred CCCcccccccccccccc-ccCCccchHHHhcCC------CCCCCcccc
Q psy7970 243 EQTMCPVCLDRLKNMIF-LCGHGTCQMCGDRMS------ECPICRKAV 283 (290)
Q Consensus 243 e~~~C~IC~~~~~~~v~-~CGH~fC~~C~~~~~------~CP~CR~~i 283 (290)
-+..|+||++...+|+. +|||.||..|+..+| .||.||..+
T Consensus 214 ~d~kC~lC~e~~~~ps~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~ 261 (271)
T COG5574 214 ADYKCFLCLEEPEVPSCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKV 261 (271)
T ss_pred cccceeeeecccCCcccccccchhhHHHHHHHHHhhccccCchhhhhc
Confidence 46889999999999966 599999999999833 599999876
No 38
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=97.43 E-value=0.0001 Score=49.02 Aligned_cols=28 Identities=36% Similarity=0.812 Sum_probs=24.7
Q ss_pred CceEEeCCCCeecchhhHhcCC----CCCCCCc
Q psy7970 136 ASVLFKPCYHMVACESCASLMK----KCVQCRT 164 (290)
Q Consensus 136 ~~~~~~PCgH~~~C~~Ca~~~~----~Cp~Cr~ 164 (290)
...++++|||. +|..|+..+. .||+||+
T Consensus 13 ~~~~l~~CgH~-~C~~C~~~~~~~~~~CP~C~k 44 (44)
T PF14634_consen 13 RRPRLTSCGHI-FCEKCLKKLKGKSVKCPICRK 44 (44)
T ss_pred CCeEEcccCCH-HHHHHHHhhcCCCCCCcCCCC
Confidence 45789999999 9999998776 9999984
No 39
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=97.42 E-value=0.00011 Score=47.51 Aligned_cols=34 Identities=29% Similarity=0.745 Sum_probs=27.0
Q ss_pred cccccccCCce-EEeCCCCeecchhhHhc----CCCCCCC
Q psy7970 128 CMVCSLKKASV-LFKPCYHMVACESCASL----MKKCVQC 162 (290)
Q Consensus 128 C~~C~~~~~~~-~~~PCgH~~~C~~Ca~~----~~~Cp~C 162 (290)
|.+|++...+. +++||||. +|..|+.+ ..+||.|
T Consensus 1 C~iC~~~~~~~~~~~~CGH~-fC~~C~~~~~~~~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHS-FCKECIEKYLEKNPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEE-EEHHHHHHHHHCTSB-TTT
T ss_pred CCCCCCcccCcCEECCCCCc-hhHHHHHHHHHCcCCCcCC
Confidence 68899988888 78999999 99999954 4688876
No 40
>KOG0823|consensus
Probab=97.09 E-value=0.0003 Score=62.55 Aligned_cols=48 Identities=21% Similarity=0.566 Sum_probs=41.2
Q ss_pred ccccccccccCCceEEeCCCCeecchhhHhc-------CCCCCCCCcccc--ccccee
Q psy7970 125 IEECMVCSLKKASVLFKPCYHMVACESCASL-------MKKCVQCRTQID--HMHPMV 173 (290)
Q Consensus 125 i~~C~~C~~~~~~~~~~PCgH~~~C~~Ca~~-------~~~Cp~Cr~~i~--~~~~~~ 173 (290)
.++|-||++...+.|+..|||+ +|..|... .+.||+|+..|. +++|+|
T Consensus 47 ~FdCNICLd~akdPVvTlCGHL-FCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvPlY 103 (230)
T KOG0823|consen 47 FFDCNICLDLAKDPVVTLCGHL-FCWPCLYQWLQTRPNSKECPVCKAEVSIDTVVPLY 103 (230)
T ss_pred ceeeeeeccccCCCEEeecccc-eehHHHHHHHhhcCCCeeCCccccccccceEEeee
Confidence 4699999999999999999999 99999953 478999996654 577887
No 41
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=96.98 E-value=0.00047 Score=60.17 Aligned_cols=48 Identities=21% Similarity=0.551 Sum_probs=39.5
Q ss_pred ccccccccccCCceEEeCCCCeecchhhHhc--------------------CCCCCCCCccccc--cccee
Q psy7970 125 IEECMVCSLKKASVLFKPCYHMVACESCASL--------------------MKKCVQCRTQIDH--MHPMV 173 (290)
Q Consensus 125 i~~C~~C~~~~~~~~~~PCgH~~~C~~Ca~~--------------------~~~Cp~Cr~~i~~--~~~~~ 173 (290)
...|.||++...+.++++|||. +|..|... ...||.||..|.. .+++|
T Consensus 18 ~~~CpICld~~~dPVvT~CGH~-FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvPiy 87 (193)
T PLN03208 18 DFDCNICLDQVRDPVVTLCGHL-FCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVPIY 87 (193)
T ss_pred ccCCccCCCcCCCcEEcCCCch-hHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEEee
Confidence 3689999999999999999998 99999953 1379999999876 44554
No 42
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=96.84 E-value=0.001 Score=41.35 Aligned_cols=34 Identities=29% Similarity=0.732 Sum_probs=28.3
Q ss_pred cccccccCCceEEeCCCCeecchhhHhc-----CCCCCCC
Q psy7970 128 CMVCSLKKASVLFKPCYHMVACESCASL-----MKKCVQC 162 (290)
Q Consensus 128 C~~C~~~~~~~~~~PCgH~~~C~~Ca~~-----~~~Cp~C 162 (290)
|.+|.+.....+++||||. +|..|... ..+||.|
T Consensus 1 C~iC~~~~~~~~~~~C~H~-~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKDPVVLPCGHT-FCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCCCCcEEecCCCh-HHHHHHHHHHHhCcCCCCCC
Confidence 6788888889999999999 99999963 3568876
No 43
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=96.84 E-value=0.00068 Score=44.82 Aligned_cols=36 Identities=33% Similarity=0.696 Sum_probs=26.6
Q ss_pred cccccccc---CCceEEeCCCCeecchhhHhc----CCCCCCCC
Q psy7970 127 ECMVCSLK---KASVLFKPCYHMVACESCASL----MKKCVQCR 163 (290)
Q Consensus 127 ~C~~C~~~---~~~~~~~PCgH~~~C~~Ca~~----~~~Cp~Cr 163 (290)
.|.||++. ...++.+||||. ++..|..+ -..||.||
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~-fh~~Ci~~~~~~~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHV-FHRSCIKEWLKRNNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEE-EEHHHHHHHHHHSSB-TTTH
T ss_pred CCcCCChhhcCCCeEEEccCCCe-eCHHHHHHHHHhCCcCCccC
Confidence 35556543 457788999998 99999953 47999997
No 44
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=96.82 E-value=0.00085 Score=44.27 Aligned_cols=27 Identities=30% Similarity=0.583 Sum_probs=23.0
Q ss_pred cccccccCCceEEeCCCCeecchhhHhc
Q psy7970 128 CMVCSLKKASVLFKPCYHMVACESCASL 155 (290)
Q Consensus 128 C~~C~~~~~~~~~~PCgH~~~C~~Ca~~ 155 (290)
|.+|++-..+.+.++|||. +|..|..+
T Consensus 1 CpiC~~~~~~Pv~l~CGH~-FC~~Cl~~ 27 (42)
T PF15227_consen 1 CPICLDLFKDPVSLPCGHS-FCRSCLER 27 (42)
T ss_dssp ETTTTSB-SSEEE-SSSSE-EEHHHHHH
T ss_pred CCccchhhCCccccCCcCH-HHHHHHHH
Confidence 7899999999999999999 99999964
No 45
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=96.77 E-value=0.0013 Score=42.30 Aligned_cols=39 Identities=38% Similarity=0.850 Sum_probs=28.4
Q ss_pred ccccccccC-CceEEeCCCCeecchhhHhc-----CCCCCCCCccc
Q psy7970 127 ECMVCSLKK-ASVLFKPCYHMVACESCASL-----MKKCVQCRTQI 166 (290)
Q Consensus 127 ~C~~C~~~~-~~~~~~PCgH~~~C~~Ca~~-----~~~Cp~Cr~~i 166 (290)
.|.+|.+.. ..+.+.||||. +|..|... ...||.|+..+
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~-~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHV-FCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhhhCceEecCCCCh-hcHHHHHHHHHhCcCCCCCCCCcC
Confidence 366777766 44455569999 99999952 45799999753
No 46
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=96.71 E-value=0.0011 Score=43.03 Aligned_cols=34 Identities=29% Similarity=0.714 Sum_probs=27.5
Q ss_pred cccccccCCceE-EeCCCCeecchhhHhc------CCCCCCC
Q psy7970 128 CMVCSLKKASVL-FKPCYHMVACESCASL------MKKCVQC 162 (290)
Q Consensus 128 C~~C~~~~~~~~-~~PCgH~~~C~~Ca~~------~~~Cp~C 162 (290)
|.+|.+...... ++||||. +|..|..+ ..+||.|
T Consensus 1 C~iC~~~~~~~~~~~~C~H~-fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHS-FCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEE-EEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCCEEecCCCc-chHHHHHHHHHhcCCccCCcC
Confidence 677888777777 9999999 99999953 3478876
No 47
>KOG0320|consensus
Probab=96.67 E-value=0.0007 Score=57.99 Aligned_cols=44 Identities=27% Similarity=0.651 Sum_probs=35.1
Q ss_pred ccccccccccCCceE-E-eCCCCeecchhhHhc----CCCCCCCCcccccc
Q psy7970 125 IEECMVCSLKKASVL-F-KPCYHMVACESCASL----MKKCVQCRTQIDHM 169 (290)
Q Consensus 125 i~~C~~C~~~~~~~~-~-~PCgH~~~C~~Ca~~----~~~Cp~Cr~~i~~~ 169 (290)
.|.|.+|++.....+ + .-|||+ +|..|+.+ -.+||.||+.|...
T Consensus 131 ~~~CPiCl~~~sek~~vsTkCGHv-FC~~Cik~alk~~~~CP~C~kkIt~k 180 (187)
T KOG0320|consen 131 TYKCPICLDSVSEKVPVSTKCGHV-FCSQCIKDALKNTNKCPTCRKKITHK 180 (187)
T ss_pred ccCCCceecchhhccccccccchh-HHHHHHHHHHHhCCCCCCcccccchh
Confidence 489999988755544 3 789999 99999964 36999999987763
No 48
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=96.63 E-value=0.00076 Score=49.89 Aligned_cols=35 Identities=31% Similarity=0.878 Sum_probs=26.9
Q ss_pred cccccccccccc-------------cc-ccCCccchHHHhcC----CCCCCCc
Q psy7970 246 MCPVCLDRLKNM-------------IF-LCGHGTCQMCGDRM----SECPICR 280 (290)
Q Consensus 246 ~C~IC~~~~~~~-------------v~-~CGH~fC~~C~~~~----~~CP~CR 280 (290)
.|.||++.+.++ +. .|||.|-..|+.+| ..||+||
T Consensus 21 ~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 21 NCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNNTCPLCR 73 (73)
T ss_dssp BETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred cccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCCcCCCCC
Confidence 499999988222 22 39999999999987 4799997
No 49
>KOG0317|consensus
Probab=96.56 E-value=0.0011 Score=60.85 Aligned_cols=45 Identities=24% Similarity=0.597 Sum_probs=38.8
Q ss_pred ccccccccccCCceEEeCCCCeecchhhHhc----CCCCCCCCccccccc
Q psy7970 125 IEECMVCSLKKASVLFKPCYHMVACESCASL----MKKCVQCRTQIDHMH 170 (290)
Q Consensus 125 i~~C~~C~~~~~~~~~~PCgH~~~C~~Ca~~----~~~Cp~Cr~~i~~~~ 170 (290)
.+.|.+|++...+..-+||||. +|..|... -..||.||.......
T Consensus 239 ~~kC~LCLe~~~~pSaTpCGHi-FCWsCI~~w~~ek~eCPlCR~~~~psk 287 (293)
T KOG0317|consen 239 TRKCSLCLENRSNPSATPCGHI-FCWSCILEWCSEKAECPLCREKFQPSK 287 (293)
T ss_pred CCceEEEecCCCCCCcCcCcch-HHHHHHHHHHccccCCCcccccCCCcc
Confidence 3799999999999999999999 99999953 357999998876553
No 50
>PHA02929 N1R/p28-like protein; Provisional
Probab=96.53 E-value=0.0018 Score=58.57 Aligned_cols=47 Identities=26% Similarity=0.580 Sum_probs=36.1
Q ss_pred ccccccccccCCc--------eEEeCCCCeecchhhHhc----CCCCCCCCcccccccce
Q psy7970 125 IEECMVCSLKKAS--------VLFKPCYHMVACESCASL----MKKCVQCRTQIDHMHPM 172 (290)
Q Consensus 125 i~~C~~C~~~~~~--------~~~~PCgH~~~C~~Ca~~----~~~Cp~Cr~~i~~~~~~ 172 (290)
-.+|.+|++...+ .++.||||. +|..|..+ ...||.||.++..+++.
T Consensus 174 ~~eC~ICle~~~~~~~~~~~~~vl~~C~H~-FC~~CI~~Wl~~~~tCPlCR~~~~~v~~~ 232 (238)
T PHA02929 174 DKECAICMEKVYDKEIKNMYFGILSNCNHV-FCIECIDIWKKEKNTCPVCRTPFISVIKS 232 (238)
T ss_pred CCCCccCCcccccCccccccceecCCCCCc-ccHHHHHHHHhcCCCCCCCCCEeeEEeee
Confidence 3589999886432 356789998 99999953 46999999998876543
No 51
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=96.30 E-value=0.0023 Score=44.53 Aligned_cols=43 Identities=23% Similarity=0.661 Sum_probs=36.3
Q ss_pred cccccccccCCceEEeCCCCeecchhhHh--cCCCCCCCCcccccc
Q psy7970 126 EECMVCSLKKASVLFKPCYHMVACESCAS--LMKKCVQCRTQIDHM 169 (290)
Q Consensus 126 ~~C~~C~~~~~~~~~~PCgH~~~C~~Ca~--~~~~Cp~Cr~~i~~~ 169 (290)
..|+.|......-+++||||+ +|..|.. +-..||+|..+++..
T Consensus 8 ~~~~~~~~~~~~~~~~pCgH~-I~~~~f~~~rYngCPfC~~~~~~~ 52 (55)
T PF14447_consen 8 QPCVFCGFVGTKGTVLPCGHL-ICDNCFPGERYNGCPFCGTPFEFD 52 (55)
T ss_pred eeEEEccccccccccccccce-eeccccChhhccCCCCCCCcccCC
Confidence 467778888888899999999 9999985 567999999998754
No 52
>KOG2660|consensus
Probab=96.28 E-value=0.001 Score=62.05 Aligned_cols=51 Identities=24% Similarity=0.561 Sum_probs=42.2
Q ss_pred HHHhccCCCcccccccccccccc-c-cCCccchHHHhcC----CCCCCCcccccccc
Q psy7970 237 QLQDIKEQTMCPVCLDRLKNMIF-L-CGHGTCQMCGDRM----SECPICRKAVEKRI 287 (290)
Q Consensus 237 ~~~~l~e~~~C~IC~~~~~~~v~-~-CGH~fC~~C~~~~----~~CP~CR~~i~~~~ 287 (290)
.+.++....+|.+|-.++.|+++ . |-|+||++||.+. .+||.|...|-+..
T Consensus 8 k~~~~n~~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~~~~CP~C~i~ih~t~ 64 (331)
T KOG2660|consen 8 KLTELNPHITCRLCGGYLIDATTITECLHTFCKSCIVKYLEESKYCPTCDIVIHKTH 64 (331)
T ss_pred hhhhcccceehhhccceeecchhHHHHHHHHHHHHHHHHHHHhccCCccceeccCcc
Confidence 34556778999999999999966 3 9999999999976 48999988776544
No 53
>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A.
Probab=96.24 E-value=0.0012 Score=45.91 Aligned_cols=29 Identities=41% Similarity=0.628 Sum_probs=17.5
Q ss_pred HHHHHHHHHhCCCCCcccccCCCCCCCCC
Q psy7970 13 SASIACFLAGNGADLSIKNKKGQTPLDLC 41 (290)
Q Consensus 13 ~~aiacfL~~~Gadl~~~n~~g~tpldl~ 41 (290)
...++-+|++.|+|++++|..|+|||+++
T Consensus 28 ~~~~v~~Ll~~g~d~~~~d~~G~Tpl~~A 56 (56)
T PF13857_consen 28 HSEVVRLLLQNGADPNAKDKDGQTPLHYA 56 (56)
T ss_dssp -HHHHHHHHHCT--TT---TTS--HHHH-
T ss_pred cHHHHHHHHHCcCCCCCCcCCCCCHHHhC
Confidence 34678889999999999999999999864
No 54
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.20 E-value=0.0021 Score=58.33 Aligned_cols=40 Identities=28% Similarity=0.714 Sum_probs=35.6
Q ss_pred cccccccccCCceEEeCCCCeecchhhHhc------CCCCCCCCccc
Q psy7970 126 EECMVCSLKKASVLFKPCYHMVACESCASL------MKKCVQCRTQI 166 (290)
Q Consensus 126 ~~C~~C~~~~~~~~~~PCgH~~~C~~Ca~~------~~~Cp~Cr~~i 166 (290)
|+|.+|++.+.+....||||. +|-.|..- ..+||.||..+
T Consensus 216 ~kC~lC~e~~~~ps~t~CgHl-FC~~Cl~~~~t~~k~~~CplCRak~ 261 (271)
T COG5574 216 YKCFLCLEEPEVPSCTPCGHL-FCLSCLLISWTKKKYEFCPLCRAKV 261 (271)
T ss_pred cceeeeecccCCcccccccch-hhHHHHHHHHHhhccccCchhhhhc
Confidence 689999999999999999999 99999853 46899999764
No 55
>PHA02926 zinc finger-like protein; Provisional
Probab=95.99 E-value=0.0023 Score=56.83 Aligned_cols=47 Identities=30% Similarity=0.670 Sum_probs=34.1
Q ss_pred cccccccccccCCc---------eEEeCCCCeecchhhHhcC----------CCCCCCCcccccccc
Q psy7970 124 KIEECMVCSLKKAS---------VLFKPCYHMVACESCASLM----------KKCVQCRTQIDHMHP 171 (290)
Q Consensus 124 ~i~~C~~C~~~~~~---------~~~~PCgH~~~C~~Ca~~~----------~~Cp~Cr~~i~~~~~ 171 (290)
+-.+|.+|++.... -++.+|+|. +|..|.... +.||+||+......+
T Consensus 169 kE~eCgICmE~I~eK~~~~eRrFGIL~~CnHs-FCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~I~p 234 (242)
T PHA02926 169 KEKECGICYEVVYSKRLENDRYFGLLDSCNHI-FCITCINIWHRTRRETGASDNCPICRTRFRNITM 234 (242)
T ss_pred CCCCCccCccccccccccccccccccCCCCch-HHHHHHHHHHHhccccCcCCcCCCCcceeeeecc
Confidence 34578888775321 367799999 999999643 249999999876544
No 56
>KOG1785|consensus
Probab=95.88 E-value=0.0031 Score=60.26 Aligned_cols=48 Identities=31% Similarity=0.806 Sum_probs=42.3
Q ss_pred cccccccccCCceEEeCCCCeecchhhHhc------CCCCCCCCcccccccceee
Q psy7970 126 EECMVCSLKKASVLFKPCYHMVACESCASL------MKKCVQCRTQIDHMHPMVV 174 (290)
Q Consensus 126 ~~C~~C~~~~~~~~~~PCgH~~~C~~Ca~~------~~~Cp~Cr~~i~~~~~~~~ 174 (290)
++|.||-+...++.+-||||. .|..|... .+.||+||-.|....+++|
T Consensus 370 eLCKICaendKdvkIEPCGHL-lCt~CLa~WQ~sd~gq~CPFCRcEIKGte~vii 423 (563)
T KOG1785|consen 370 ELCKICAENDKDVKIEPCGHL-LCTSCLAAWQDSDEGQTCPFCRCEIKGTEPVII 423 (563)
T ss_pred HHHHHhhccCCCcccccccch-HHHHHHHhhcccCCCCCCCceeeEeccccceee
Confidence 599999999999999999999 99999853 4699999999988777644
No 57
>KOG2879|consensus
Probab=95.87 E-value=0.0047 Score=56.36 Aligned_cols=43 Identities=35% Similarity=0.690 Sum_probs=36.2
Q ss_pred cCCCcccccccccccccc-c-cCCccchHHHhcC------CCCCCCccccc
Q psy7970 242 KEQTMCPVCLDRLKNMIF-L-CGHGTCQMCGDRM------SECPICRKAVE 284 (290)
Q Consensus 242 ~e~~~C~IC~~~~~~~v~-~-CGH~fC~~C~~~~------~~CP~CR~~i~ 284 (290)
.....||+|.+.+..|.. . |||.||+.|+... +.||.|..+..
T Consensus 237 t~~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 237 TSDTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred cCCceeeccCCCCCCCeeeccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence 456899999999999944 4 9999999999964 47999988764
No 58
>KOG0297|consensus
Probab=95.84 E-value=0.0045 Score=60.00 Aligned_cols=46 Identities=30% Similarity=0.885 Sum_probs=39.8
Q ss_pred ccCCCcccccccccccccc--ccCCccchHHHhcCC----CCCCCccccccc
Q psy7970 241 IKEQTMCPVCLDRLKNMIF--LCGHGTCQMCGDRMS----ECPICRKAVEKR 286 (290)
Q Consensus 241 l~e~~~C~IC~~~~~~~v~--~CGH~fC~~C~~~~~----~CP~CR~~i~~~ 286 (290)
+++.+.|++|+..+.+|+. .|||.||..|+..+. .||.|+......
T Consensus 18 ~~~~l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~~~~~~cp~~~~~~~~~ 69 (391)
T KOG0297|consen 18 LDENLLCPICMSVLRDPVQTTTCGHRFCAGCLLESLSNHQKCPVCRQELTQA 69 (391)
T ss_pred CcccccCccccccccCCCCCCCCCCcccccccchhhccCcCCcccccccchh
Confidence 6788999999999999977 599999999999873 799998876543
No 59
>KOG0978|consensus
Probab=95.80 E-value=0.0024 Score=65.30 Aligned_cols=42 Identities=26% Similarity=0.751 Sum_probs=37.4
Q ss_pred ccccccccccCCceEEeCCCCeecchhhHh-----cCCCCCCCCcccc
Q psy7970 125 IEECMVCSLKKASVLFKPCYHMVACESCAS-----LMKKCVQCRTQID 167 (290)
Q Consensus 125 i~~C~~C~~~~~~~~~~PCgH~~~C~~Ca~-----~~~~Cp~Cr~~i~ 167 (290)
+-.|.+|..++.++++.-|||. +|+.|.. |.++||.|...+.
T Consensus 643 ~LkCs~Cn~R~Kd~vI~kC~H~-FC~~Cvq~r~etRqRKCP~Cn~aFg 689 (698)
T KOG0978|consen 643 LLKCSVCNTRWKDAVITKCGHV-FCEECVQTRYETRQRKCPKCNAAFG 689 (698)
T ss_pred ceeCCCccCchhhHHHHhcchH-HHHHHHHHHHHHhcCCCCCCCCCCC
Confidence 3479999999999999999999 9999995 6799999998864
No 60
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=95.75 E-value=0.012 Score=55.41 Aligned_cols=49 Identities=33% Similarity=0.692 Sum_probs=40.4
Q ss_pred CCCCCCCCccccccccCcceEeecCCCcccccchhhhh------ccCCCCCCcchh
Q psy7970 72 TEDMVTLDECRICSDLKRDILFQPCGHVACCSVCAPRV------KKCLICREPVEK 121 (290)
Q Consensus 72 ~~~~~~~~~C~iC~~~~~~~~~~PCgH~~~C~~Ca~~~------~~Cp~Cr~~i~~ 121 (290)
....++...|.||-..-.-..++||+|.. |..|+-++ +.||+||..-..
T Consensus 55 ddtDEen~~C~ICA~~~TYs~~~PC~H~~-CH~Ca~RlRALY~~K~C~~CrTE~e~ 109 (493)
T COG5236 55 DDTDEENMNCQICAGSTTYSARYPCGHQI-CHACAVRLRALYMQKGCPLCRTETEA 109 (493)
T ss_pred cccccccceeEEecCCceEEEeccCCchH-HHHHHHHHHHHHhccCCCccccccce
Confidence 34456667899999998889999999995 99999876 689999976544
No 61
>KOG4159|consensus
Probab=95.73 E-value=0.0042 Score=60.16 Aligned_cols=45 Identities=38% Similarity=0.854 Sum_probs=38.6
Q ss_pred ccCCCccccccccccccccc-cCCccchHHHhcC----CCCCCCcccccc
Q psy7970 241 IKEQTMCPVCLDRLKNMIFL-CGHGTCQMCGDRM----SECPICRKAVEK 285 (290)
Q Consensus 241 l~e~~~C~IC~~~~~~~v~~-CGH~fC~~C~~~~----~~CP~CR~~i~~ 285 (290)
+..++.|.||+..+.+||.+ |||.||..|+.+. ..||.||.++.+
T Consensus 81 ~~sef~c~vc~~~l~~pv~tpcghs~c~~Cl~r~ld~~~~cp~Cr~~l~e 130 (398)
T KOG4159|consen 81 IRSEFECCVCSRALYPPVVTPCGHSFCLECLDRSLDQETECPLCRDELVE 130 (398)
T ss_pred ccchhhhhhhHhhcCCCccccccccccHHHHHHHhccCCCCccccccccc
Confidence 36789999999999999775 9999999997764 479999998764
No 62
>KOG3002|consensus
Probab=95.72 E-value=0.0052 Score=57.40 Aligned_cols=43 Identities=37% Similarity=0.990 Sum_probs=37.5
Q ss_pred CCCcccccccccccccccc--CCccchHHHhcC-CCCCCCcccccc
Q psy7970 243 EQTMCPVCLDRLKNMIFLC--GHGTCQMCGDRM-SECPICRKAVEK 285 (290)
Q Consensus 243 e~~~C~IC~~~~~~~v~~C--GH~fC~~C~~~~-~~CP~CR~~i~~ 285 (290)
+-+.||||.+.+..|+++| ||..|..|-.++ ..||.||.++.+
T Consensus 47 ~lleCPvC~~~l~~Pi~QC~nGHlaCssC~~~~~~~CP~Cr~~~g~ 92 (299)
T KOG3002|consen 47 DLLDCPVCFNPLSPPIFQCDNGHLACSSCRTKVSNKCPTCRLPIGN 92 (299)
T ss_pred hhccCchhhccCcccceecCCCcEehhhhhhhhcccCCcccccccc
Confidence 3489999999999999997 799999999555 589999999863
No 63
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=95.67 E-value=0.006 Score=40.52 Aligned_cols=18 Identities=28% Similarity=0.811 Sum_probs=13.7
Q ss_pred eEEeCCCCeecchhhHhcC
Q psy7970 138 VLFKPCYHMVACESCASLM 156 (290)
Q Consensus 138 ~~~~PCgH~~~C~~Ca~~~ 156 (290)
.+.+||||. +|++|..++
T Consensus 14 P~~L~CGH~-~c~~cl~~l 31 (43)
T PF13445_consen 14 PMVLPCGHV-FCKDCLQKL 31 (43)
T ss_dssp EEE-SSS-E-EEHHHHHHH
T ss_pred CEEEeCccH-HHHHHHHHH
Confidence 688999999 999998654
No 64
>KOG2164|consensus
Probab=95.54 E-value=0.0077 Score=59.28 Aligned_cols=49 Identities=22% Similarity=0.507 Sum_probs=41.5
Q ss_pred ccccccccccCCceEEeCCCCeecchhhHh---------cCCCCCCCCccccc--ccceee
Q psy7970 125 IEECMVCSLKKASVLFKPCYHMVACESCAS---------LMKKCVQCRTQIDH--MHPMVV 174 (290)
Q Consensus 125 i~~C~~C~~~~~~~~~~PCgH~~~C~~Ca~---------~~~~Cp~Cr~~i~~--~~~~~~ 174 (290)
-+.|.||++.+..++.+-|||. +|-.|.- ..++||+||..|.. ..++++
T Consensus 186 ~~~CPICL~~~~~p~~t~CGHi-FC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~pv~~ 245 (513)
T KOG2164|consen 186 DMQCPICLEPPSVPVRTNCGHI-FCGPCILQYWNYSAIKGPCSCPICRSTITLKDLLPVFI 245 (513)
T ss_pred CCcCCcccCCCCcccccccCce-eeHHHHHHHHhhhcccCCccCCchhhhccccceeeeee
Confidence 4689999999999999999999 9999984 35799999999887 556543
No 65
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.51 E-value=0.0081 Score=58.17 Aligned_cols=43 Identities=23% Similarity=0.525 Sum_probs=36.4
Q ss_pred ccccccccccCCceEEeCCCCeecchhhHhc----CCCCCCCCccccc
Q psy7970 125 IEECMVCSLKKASVLFKPCYHMVACESCASL----MKKCVQCRTQIDH 168 (290)
Q Consensus 125 i~~C~~C~~~~~~~~~~PCgH~~~C~~Ca~~----~~~Cp~Cr~~i~~ 168 (290)
...|.||.+.....+++||||. +|..|... ...||.|+..+..
T Consensus 26 ~l~C~IC~d~~~~PvitpCgH~-FCs~CI~~~l~~~~~CP~Cr~~~~~ 72 (397)
T TIGR00599 26 SLRCHICKDFFDVPVLTSCSHT-FCSLCIRRCLSNQPKCPLCRAEDQE 72 (397)
T ss_pred ccCCCcCchhhhCccCCCCCCc-hhHHHHHHHHhCCCCCCCCCCcccc
Confidence 3689999998888899999999 99999963 3589999988654
No 66
>KOG4692|consensus
Probab=95.48 E-value=0.0054 Score=57.81 Aligned_cols=43 Identities=28% Similarity=0.764 Sum_probs=38.5
Q ss_pred cccccccccCCceEEeCCCCeecchhhHh----cCCCCCCCCcccccc
Q psy7970 126 EECMVCSLKKASVLFKPCYHMVACESCAS----LMKKCVQCRTQIDHM 169 (290)
Q Consensus 126 ~~C~~C~~~~~~~~~~PCgH~~~C~~Ca~----~~~~Cp~Cr~~i~~~ 169 (290)
..|.||+..+.+++|.||+|. .|.+|.. ..|.|-+|+.++...
T Consensus 423 ~lCpICyA~pi~Avf~PC~H~-SC~~CI~qHlmN~k~CFfCktTv~~~ 469 (489)
T KOG4692|consen 423 NLCPICYAGPINAVFAPCSHR-SCYGCITQHLMNCKRCFFCKTTVIDV 469 (489)
T ss_pred ccCcceecccchhhccCCCCc-hHHHHHHHHHhcCCeeeEecceeeeh
Confidence 489999999999999999999 9999995 358999999987663
No 67
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=95.36 E-value=0.011 Score=41.22 Aligned_cols=43 Identities=33% Similarity=0.778 Sum_probs=35.9
Q ss_pred CCccccccccCcceEeecCCCcccccchhh--hhccCCCCCCcchh
Q psy7970 78 LDECRICSDLKRDILFQPCGHVACCSVCAP--RVKKCLICREPVEK 121 (290)
Q Consensus 78 ~~~C~iC~~~~~~~~~~PCgH~~~C~~Ca~--~~~~Cp~Cr~~i~~ 121 (290)
...|+.|......-+++||||++ |..|.. +..-||+|..++..
T Consensus 7 ~~~~~~~~~~~~~~~~~pCgH~I-~~~~f~~~rYngCPfC~~~~~~ 51 (55)
T PF14447_consen 7 EQPCVFCGFVGTKGTVLPCGHLI-CDNCFPGERYNGCPFCGTPFEF 51 (55)
T ss_pred ceeEEEcccccccccccccccee-eccccChhhccCCCCCCCcccC
Confidence 45688888888889999999996 888885 45799999988753
No 68
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=95.30 E-value=0.021 Score=40.11 Aligned_cols=40 Identities=5% Similarity=-0.081 Sum_probs=33.1
Q ss_pred ccccccccCCceEEeCCCCeecchhhHhc----CCCCCCCCcccc
Q psy7970 127 ECMVCSLKKASVLFKPCYHMVACESCASL----MKKCVQCRTQID 167 (290)
Q Consensus 127 ~C~~C~~~~~~~~~~PCgH~~~C~~Ca~~----~~~Cp~Cr~~i~ 167 (290)
.|.+|.+...+.+.+||||. +|..|... -..||.|+.++.
T Consensus 3 ~Cpi~~~~~~~Pv~~~~G~v-~~~~~i~~~~~~~~~cP~~~~~~~ 46 (63)
T smart00504 3 LCPISLEVMKDPVILPSGQT-YERRAIEKWLLSHGTDPVTGQPLT 46 (63)
T ss_pred CCcCCCCcCCCCEECCCCCE-EeHHHHHHHHHHCCCCCCCcCCCC
Confidence 57788887778899999998 99999964 358999998863
No 69
>KOG1039|consensus
Probab=95.22 E-value=0.0086 Score=56.92 Aligned_cols=46 Identities=24% Similarity=0.689 Sum_probs=39.0
Q ss_pred cCCCccccccccccccc-----c---c-cCCccchHHHhcCC-----------CCCCCcccccccc
Q psy7970 242 KEQTMCPVCLDRLKNMI-----F---L-CGHGTCQMCGDRMS-----------ECPICRKAVEKRI 287 (290)
Q Consensus 242 ~e~~~C~IC~~~~~~~v-----~---~-CGH~fC~~C~~~~~-----------~CP~CR~~i~~~~ 287 (290)
..+..|-|||+...+.. | + |-|.||..|+..|. .||+||.+....+
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~v~ 224 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSSFVN 224 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCcccccc
Confidence 45789999999998887 5 5 99999999999883 5999999876544
No 70
>KOG0802|consensus
Probab=95.17 E-value=0.0074 Score=60.93 Aligned_cols=42 Identities=29% Similarity=0.657 Sum_probs=35.6
Q ss_pred cCCCccccccccccc-----ccc-ccCCccchHHHhcCC----CCCCCcccc
Q psy7970 242 KEQTMCPVCLDRLKN-----MIF-LCGHGTCQMCGDRMS----ECPICRKAV 283 (290)
Q Consensus 242 ~e~~~C~IC~~~~~~-----~v~-~CGH~fC~~C~~~~~----~CP~CR~~i 283 (290)
..+..|+||+|.+.. +.. +|||.|+..|+..|. .||+||..+
T Consensus 289 ~~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er~qtCP~CR~~~ 340 (543)
T KOG0802|consen 289 LSDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFERQQTCPTCRTVL 340 (543)
T ss_pred hcCCeeeeechhhccccccccceeecccchHHHHHHHHHHHhCcCCcchhhh
Confidence 357899999999988 433 599999999999984 899999954
No 71
>KOG0824|consensus
Probab=94.92 E-value=0.012 Score=54.36 Aligned_cols=48 Identities=29% Similarity=0.615 Sum_probs=40.3
Q ss_pred CCCCccccccccCcceEeecCCCcccccchhhh-----hccCCCCCCcchhhcc
Q psy7970 76 VTLDECRICSDLKRDILFQPCGHVACCSVCAPR-----VKKCLICREPVEKRIK 124 (290)
Q Consensus 76 ~~~~~C~iC~~~~~~~~~~PCgH~~~C~~Ca~~-----~~~Cp~Cr~~i~~~~~ 124 (290)
....+|.||+.....-+.+||+|.. |..|-.. ++.|++||.+|.+.+.
T Consensus 5 ~~~~eC~IC~nt~n~Pv~l~C~HkF-CyiCiKGsy~ndk~~CavCR~pids~i~ 57 (324)
T KOG0824|consen 5 TKKKECLICYNTGNCPVNLYCFHKF-CYICIKGSYKNDKKTCAVCRFPIDSTID 57 (324)
T ss_pred ccCCcceeeeccCCcCccccccchh-hhhhhcchhhcCCCCCceecCCCCcchh
Confidence 4567999999999999999999995 8888764 3679999999987553
No 72
>KOG4692|consensus
Probab=94.75 E-value=0.011 Score=55.75 Aligned_cols=45 Identities=29% Similarity=0.764 Sum_probs=37.8
Q ss_pred cCCCccccccccccccccc-cCCccchHHHhcC----CCCCCCccccccc
Q psy7970 242 KEQTMCPVCLDRLKNMIFL-CGHGTCQMCGDRM----SECPICRKAVEKR 286 (290)
Q Consensus 242 ~e~~~C~IC~~~~~~~v~~-CGH~fC~~C~~~~----~~CP~CR~~i~~~ 286 (290)
.|+..||||..-..++||. |+|..|+.||.++ +.|=.|+.++...
T Consensus 420 sEd~lCpICyA~pi~Avf~PC~H~SC~~CI~qHlmN~k~CFfCktTv~~~ 469 (489)
T KOG4692|consen 420 SEDNLCPICYAGPINAVFAPCSHRSCYGCITQHLMNCKRCFFCKTTVIDV 469 (489)
T ss_pred cccccCcceecccchhhccCCCCchHHHHHHHHHhcCCeeeEecceeeeh
Confidence 3568999999999999995 9999999999975 4788888777543
No 73
>KOG1785|consensus
Probab=94.69 E-value=0.0099 Score=56.89 Aligned_cols=58 Identities=26% Similarity=0.651 Sum_probs=43.9
Q ss_pred hhHHHHHHHHHH---hccC-CCcccccccccccccc-ccCCccchHHHhcCC------CCCCCcccccc
Q psy7970 228 TSDIQKLQQQLQ---DIKE-QTMCPVCLDRLKNMIF-LCGHGTCQMCGDRMS------ECPICRKAVEK 285 (290)
Q Consensus 228 ~~~~~~l~~~~~---~l~e-~~~C~IC~~~~~~~v~-~CGH~fC~~C~~~~~------~CP~CR~~i~~ 285 (290)
.+.++-.+++++ ++.. -..|.||-+.-+|.-+ +|||..|..|+..|. .||+||-.|..
T Consensus 349 ~d~i~VtqEQyeLYceMgsTFeLCKICaendKdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKG 417 (563)
T KOG1785|consen 349 QDRIKVTQEQYELYCEMGSTFELCKICAENDKDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKG 417 (563)
T ss_pred ccceeeeHHHHHHHHHccchHHHHHHhhccCCCcccccccchHHHHHHHhhcccCCCCCCCceeeEecc
Confidence 344444555555 2222 3689999999999855 699999999999884 69999998854
No 74
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=94.53 E-value=0.023 Score=53.12 Aligned_cols=43 Identities=26% Similarity=0.687 Sum_probs=31.6
Q ss_pred CCcccccccc---CcceEee--cCCCcccccchhhhh-----ccCCCCCCcchh
Q psy7970 78 LDECRICSDL---KRDILFQ--PCGHVACCSVCAPRV-----KKCLICREPVEK 121 (290)
Q Consensus 78 ~~~C~iC~~~---~~~~~~~--PCgH~~~C~~Ca~~~-----~~Cp~Cr~~i~~ 121 (290)
...|.+|.+. ..++.|+ ||||.. |..|..++ ..||.|+.++..
T Consensus 3 ~~~CP~Ck~~~y~np~~kl~i~~CGH~~-C~sCv~~l~~~~~~~CP~C~~~lrk 55 (309)
T TIGR00570 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTL-CESCVDLLFVRGSGSCPECDTPLRK 55 (309)
T ss_pred CCCCCcCCCCCccCcccccccCCCCCcc-cHHHHHHHhcCCCCCCCCCCCccch
Confidence 3579999983 3443232 999995 99999885 479999887754
No 75
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=94.47 E-value=0.015 Score=40.95 Aligned_cols=37 Identities=22% Similarity=0.476 Sum_probs=25.7
Q ss_pred cCCCccccccccccccccc--cCCccchHHHhcCC------CCCC
Q psy7970 242 KEQTMCPVCLDRLKNMIFL--CGHGTCQMCGDRMS------ECPI 278 (290)
Q Consensus 242 ~e~~~C~IC~~~~~~~v~~--CGH~fC~~C~~~~~------~CP~ 278 (290)
.-.+.|||-+..+.+||.. |||.|-+..+..+. .||.
T Consensus 9 ~~~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 9 TISLKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp B--SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred EeccCCCCcCChhhCCcCcCCCCCeecHHHHHHHHHhcCCCCCCC
Confidence 4568999999999999884 99999999998763 4876
No 76
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=94.44 E-value=0.021 Score=53.80 Aligned_cols=44 Identities=30% Similarity=0.671 Sum_probs=38.8
Q ss_pred ccccccccccCCceEEeCCCCeecchhhHhcC------CCCCCCCcccccc
Q psy7970 125 IEECMVCSLKKASVLFKPCYHMVACESCASLM------KKCVQCRTQIDHM 169 (290)
Q Consensus 125 i~~C~~C~~~~~~~~~~PCgH~~~C~~Ca~~~------~~Cp~Cr~~i~~~ 169 (290)
-..|.||-....-+..+||+|. .|..|+.|+ +.|++||..-+.+
T Consensus 61 n~~C~ICA~~~TYs~~~PC~H~-~CH~Ca~RlRALY~~K~C~~CrTE~e~V 110 (493)
T COG5236 61 NMNCQICAGSTTYSARYPCGHQ-ICHACAVRLRALYMQKGCPLCRTETEAV 110 (493)
T ss_pred cceeEEecCCceEEEeccCCch-HHHHHHHHHHHHHhccCCCccccccceE
Confidence 3689999999999999999999 999999764 7999999876665
No 77
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=94.44 E-value=0.027 Score=52.65 Aligned_cols=26 Identities=38% Similarity=0.936 Sum_probs=22.3
Q ss_pred CCCCeecchhhHhcC-----CCCCCCCccccc
Q psy7970 142 PCYHMVACESCASLM-----KKCVQCRTQIDH 168 (290)
Q Consensus 142 PCgH~~~C~~Ca~~~-----~~Cp~Cr~~i~~ 168 (290)
+|||. .|..|..++ ..||.|+.++.+
T Consensus 25 ~CGH~-~C~sCv~~l~~~~~~~CP~C~~~lrk 55 (309)
T TIGR00570 25 VCGHT-LCESCVDLLFVRGSGSCPECDTPLRK 55 (309)
T ss_pred CCCCc-ccHHHHHHHhcCCCCCCCCCCCccch
Confidence 89999 999999763 489999988765
No 78
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=94.23 E-value=0.024 Score=43.10 Aligned_cols=26 Identities=27% Similarity=0.636 Sum_probs=22.1
Q ss_pred ccCCccchHHHhcCC-------CCCCCcccccc
Q psy7970 260 LCGHGTCQMCGDRMS-------ECPICRKAVEK 285 (290)
Q Consensus 260 ~CGH~fC~~C~~~~~-------~CP~CR~~i~~ 285 (290)
.|+|.|=..||.+|. .||+||+++.-
T Consensus 51 ~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~~ 83 (85)
T PF12861_consen 51 KCSHNFHMHCILKWLSTQSSKGQCPMCRQPWKF 83 (85)
T ss_pred cCccHHHHHHHHHHHccccCCCCCCCcCCeeee
Confidence 399999999999872 69999998753
No 79
>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A ....
Probab=94.21 E-value=0.013 Score=39.96 Aligned_cols=33 Identities=27% Similarity=0.485 Sum_probs=23.9
Q ss_pred HHHHHHHHhCCCCCcccccCCCCCCCCCCCchh
Q psy7970 14 ASIACFLAGNGADLSIKNKKGQTPLDLCPDPNL 46 (290)
Q Consensus 14 ~aiacfL~~~Gadl~~~n~~g~tpldl~~d~~~ 46 (290)
..++-+|++.|+|++.+|.+|.|||+++.--+.
T Consensus 14 ~~~~~~Ll~~~~din~~d~~g~t~lh~A~~~g~ 46 (54)
T PF13637_consen 14 LEIVKLLLEHGADINAQDEDGRTPLHYAAKNGN 46 (54)
T ss_dssp HHHHHHHHHTTSGTT-B-TTS--HHHHHHHTT-
T ss_pred HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHccC
Confidence 478899999999999999999999998754433
No 80
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=94.14 E-value=0.014 Score=51.00 Aligned_cols=39 Identities=33% Similarity=0.906 Sum_probs=32.7
Q ss_pred CCccccccccccccccc-cCCccchHHHhcC----CCCCCCccc
Q psy7970 244 QTMCPVCLDRLKNMIFL-CGHGTCQMCGDRM----SECPICRKA 282 (290)
Q Consensus 244 ~~~C~IC~~~~~~~v~~-CGH~fC~~C~~~~----~~CP~CR~~ 282 (290)
.+.|-||-.-+..||.. |||.||..|..+- ..|-+|.+.
T Consensus 196 PF~C~iCKkdy~spvvt~CGH~FC~~Cai~~y~kg~~C~~Cgk~ 239 (259)
T COG5152 196 PFLCGICKKDYESPVVTECGHSFCSLCAIRKYQKGDECGVCGKA 239 (259)
T ss_pred ceeehhchhhccchhhhhcchhHHHHHHHHHhccCCcceecchh
Confidence 47999999999999775 9999999999864 368888654
No 81
>KOG0804|consensus
Probab=93.81 E-value=0.028 Score=54.61 Aligned_cols=43 Identities=35% Similarity=0.809 Sum_probs=35.8
Q ss_pred cCCCccccccccccccc---c--ccCCccchHHHhcCC--CCCCCccccc
Q psy7970 242 KEQTMCPVCLDRLKNMI---F--LCGHGTCQMCGDRMS--ECPICRKAVE 284 (290)
Q Consensus 242 ~e~~~C~IC~~~~~~~v---~--~CGH~fC~~C~~~~~--~CP~CR~~i~ 284 (290)
-|-.+||||++++-..+ + +|-|.|=..|+..|| .||+||-...
T Consensus 173 tELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~~scpvcR~~q~ 222 (493)
T KOG0804|consen 173 TELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWDSSCPVCRYCQS 222 (493)
T ss_pred ccCCCcchhHhhcCccccceeeeecccccchHHHhhcccCcChhhhhhcC
Confidence 56799999999887764 3 399999999999997 7999996543
No 82
>KOG1814|consensus
Probab=93.78 E-value=0.028 Score=54.04 Aligned_cols=30 Identities=37% Similarity=0.812 Sum_probs=24.9
Q ss_pred CCccccccccCc---ceEeecCCCcccccchhhh
Q psy7970 78 LDECRICSDLKR---DILFQPCGHVACCSVCAPR 108 (290)
Q Consensus 78 ~~~C~iC~~~~~---~~~~~PCgH~~~C~~Ca~~ 108 (290)
.-.|-||++.+. .+.|+||+|+ .|..|...
T Consensus 184 lf~C~ICf~e~~G~~c~~~lpC~Hv-~Ck~C~kd 216 (445)
T KOG1814|consen 184 LFDCCICFEEQMGQHCFKFLPCSHV-FCKSCLKD 216 (445)
T ss_pred cccceeeehhhcCcceeeecccchH-HHHHHHHH
Confidence 458999999875 5899999999 59999864
No 83
>KOG1813|consensus
Probab=93.76 E-value=0.028 Score=51.89 Aligned_cols=39 Identities=23% Similarity=0.696 Sum_probs=33.7
Q ss_pred Cccccccccccccccc-cCCccchHHHhcC----CCCCCCcccc
Q psy7970 245 TMCPVCLDRLKNMIFL-CGHGTCQMCGDRM----SECPICRKAV 283 (290)
Q Consensus 245 ~~C~IC~~~~~~~v~~-CGH~fC~~C~~~~----~~CP~CR~~i 283 (290)
+.|-||...|.+||.. |||.||..|.... ..|.+|-+.+
T Consensus 242 f~c~icr~~f~~pVvt~c~h~fc~~ca~~~~qk~~~c~vC~~~t 285 (313)
T KOG1813|consen 242 FKCFICRKYFYRPVVTKCGHYFCEVCALKPYQKGEKCYVCSQQT 285 (313)
T ss_pred ccccccccccccchhhcCCceeehhhhccccccCCcceeccccc
Confidence 5699999999999776 9999999999865 3699998765
No 84
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=93.72 E-value=0.031 Score=37.96 Aligned_cols=37 Identities=32% Similarity=0.996 Sum_probs=17.5
Q ss_pred ccccccccccc---ccc--cCCccchHHHhcCC-----CCCCCcccc
Q psy7970 247 CPVCLDRLKNM---IFL--CGHGTCQMCGDRMS-----ECPICRKAV 283 (290)
Q Consensus 247 C~IC~~~~~~~---v~~--CGH~fC~~C~~~~~-----~CP~CR~~i 283 (290)
||+|.+.+-.. .++ ||+.+|..|+.+.. .||-||++.
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence 68888877322 344 99999999987653 699999874
No 85
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=93.70 E-value=0.05 Score=50.36 Aligned_cols=37 Identities=35% Similarity=0.851 Sum_probs=32.7
Q ss_pred Cccccccccccccccc--cCCccchHHHhcC-----CCCCCCcc
Q psy7970 245 TMCPVCLDRLKNMIFL--CGHGTCQMCGDRM-----SECPICRK 281 (290)
Q Consensus 245 ~~C~IC~~~~~~~v~~--CGH~fC~~C~~~~-----~~CP~CR~ 281 (290)
+.||.|.-++++|+.. |||.||..|+... +.||.|..
T Consensus 275 LkCplc~~Llrnp~kT~cC~~~fc~eci~~al~dsDf~CpnC~r 318 (427)
T COG5222 275 LKCPLCHCLLRNPMKTPCCGHTFCDECIGTALLDSDFKCPNCSR 318 (427)
T ss_pred ccCcchhhhhhCcccCccccchHHHHHHhhhhhhccccCCCccc
Confidence 8999999999999774 9999999999943 68999954
No 86
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.68 E-value=0.029 Score=52.04 Aligned_cols=42 Identities=26% Similarity=0.752 Sum_probs=35.2
Q ss_pred CCCcccccccccccc----ccccCCccchHHHhcCC-----CCCCCccccc
Q psy7970 243 EQTMCPVCLDRLKNM----IFLCGHGTCQMCGDRMS-----ECPICRKAVE 284 (290)
Q Consensus 243 e~~~C~IC~~~~~~~----v~~CGH~fC~~C~~~~~-----~CP~CR~~i~ 284 (290)
.-..|.|||+.+... +++|-|.|=..|+..|. .||+||.++.
T Consensus 322 ~GveCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iP 372 (374)
T COG5540 322 KGVECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIP 372 (374)
T ss_pred CCceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCC
Confidence 347899999988665 55699999999999983 6999998864
No 87
>KOG4628|consensus
Probab=93.61 E-value=0.029 Score=53.25 Aligned_cols=40 Identities=28% Similarity=0.752 Sum_probs=33.6
Q ss_pred cccccccccccc----ccccCCccchHHHhcCC-----CCCCCcccccc
Q psy7970 246 MCPVCLDRLKNM----IFLCGHGTCQMCGDRMS-----ECPICRKAVEK 285 (290)
Q Consensus 246 ~C~IC~~~~~~~----v~~CGH~fC~~C~~~~~-----~CP~CR~~i~~ 285 (290)
.|.||+|.+..- +++|+|.|=..|+..|. .||+|+..+..
T Consensus 231 ~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di~~ 279 (348)
T KOG4628|consen 231 TCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDIRT 279 (348)
T ss_pred eEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCCCCCcCCC
Confidence 999999988776 44599999999999882 49999987644
No 88
>KOG2177|consensus
Probab=93.41 E-value=0.023 Score=50.86 Aligned_cols=43 Identities=33% Similarity=0.779 Sum_probs=36.9
Q ss_pred CCCCCCccccccccCcceEeecCCCcccccchhhhh----ccCCCCCC
Q psy7970 74 DMVTLDECRICSDLKRDILFQPCGHVACCSVCAPRV----KKCLICRE 117 (290)
Q Consensus 74 ~~~~~~~C~iC~~~~~~~~~~PCgH~~~C~~Ca~~~----~~Cp~Cr~ 117 (290)
...+...|.||++.-.+..++||||.. |..|...+ ..||.||.
T Consensus 9 ~~~~~~~C~iC~~~~~~p~~l~C~H~~-c~~C~~~~~~~~~~Cp~cr~ 55 (386)
T KOG2177|consen 9 VLQEELTCPICLEYFREPVLLPCGHNF-CRACLTRSWEGPLSCPVCRP 55 (386)
T ss_pred hccccccChhhHHHhhcCccccccchH-hHHHHHHhcCCCcCCcccCC
Confidence 445667899999999999999999995 99999875 48999993
No 89
>KOG0287|consensus
Probab=93.17 E-value=0.03 Score=52.63 Aligned_cols=43 Identities=21% Similarity=0.561 Sum_probs=37.7
Q ss_pred ccccccccccCCceEEeCCCCeecchhhHhc----CCCCCCCCccccc
Q psy7970 125 IEECMVCSLKKASVLFKPCYHMVACESCASL----MKKCVQCRTQIDH 168 (290)
Q Consensus 125 i~~C~~C~~~~~~~~~~PCgH~~~C~~Ca~~----~~~Cp~Cr~~i~~ 168 (290)
...|.||.+-....+++||||. +|..|... --.||.|++++..
T Consensus 23 lLRC~IC~eyf~ip~itpCsHt-fCSlCIR~~L~~~p~CP~C~~~~~E 69 (442)
T KOG0287|consen 23 LLRCGICFEYFNIPMITPCSHT-FCSLCIRKFLSYKPQCPTCCVTVTE 69 (442)
T ss_pred HHHHhHHHHHhcCceeccccch-HHHHHHHHHhccCCCCCceecccch
Confidence 4589999999999999999999 99999964 3599999998764
No 90
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=93.14 E-value=0.056 Score=51.44 Aligned_cols=42 Identities=31% Similarity=0.777 Sum_probs=33.6
Q ss_pred cCCCcccccccccccc-------------c-cccCCccchHHHhcC----CCCCCCcccc
Q psy7970 242 KEQTMCPVCLDRLKNM-------------I-FLCGHGTCQMCGDRM----SECPICRKAV 283 (290)
Q Consensus 242 ~e~~~C~IC~~~~~~~-------------v-~~CGH~fC~~C~~~~----~~CP~CR~~i 283 (290)
..+..|.||||.+..+ - ++|||.+=-+|++.| .+||+||.|+
T Consensus 285 n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERqQTCPICr~p~ 344 (491)
T COG5243 285 NSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQQTCPICRRPV 344 (491)
T ss_pred CCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhccCCCcccCcc
Confidence 4678999999974332 2 359999999999987 4899999994
No 91
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=93.03 E-value=0.05 Score=50.21 Aligned_cols=41 Identities=22% Similarity=0.463 Sum_probs=36.1
Q ss_pred cccccccccCCceEEeCCCCeecchhhHhc----CCCCCCCCcccc
Q psy7970 126 EECMVCSLKKASVLFKPCYHMVACESCASL----MKKCVQCRTQID 167 (290)
Q Consensus 126 ~~C~~C~~~~~~~~~~PCgH~~~C~~Ca~~----~~~Cp~Cr~~i~ 167 (290)
..|.||.+.....+..||||. +|..|..+ ...||.||....
T Consensus 26 lrC~IC~~~i~ip~~TtCgHt-FCslCIR~hL~~qp~CP~Cr~~~~ 70 (391)
T COG5432 26 LRCRICDCRISIPCETTCGHT-FCSLCIRRHLGTQPFCPVCREDPC 70 (391)
T ss_pred HHhhhhhheeecceecccccc-hhHHHHHHHhcCCCCCccccccHH
Confidence 589999999999999999999 99999964 469999997743
No 92
>KOG2177|consensus
Probab=92.46 E-value=0.046 Score=48.81 Aligned_cols=40 Identities=25% Similarity=0.574 Sum_probs=34.6
Q ss_pred cccccccccccCCceEEeCCCCeecchhhHhcC----CCCCCCCc
Q psy7970 124 KIEECMVCSLKKASVLFKPCYHMVACESCASLM----KKCVQCRT 164 (290)
Q Consensus 124 ~i~~C~~C~~~~~~~~~~PCgH~~~C~~Ca~~~----~~Cp~Cr~ 164 (290)
....|.||++......++||||. +|..|.... -.||.||.
T Consensus 12 ~~~~C~iC~~~~~~p~~l~C~H~-~c~~C~~~~~~~~~~Cp~cr~ 55 (386)
T KOG2177|consen 12 EELTCPICLEYFREPVLLPCGHN-FCRACLTRSWEGPLSCPVCRP 55 (386)
T ss_pred ccccChhhHHHhhcCccccccch-HhHHHHHHhcCCCcCCcccCC
Confidence 35689999998888899999999 999999764 59999993
No 93
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=92.13 E-value=0.058 Score=40.07 Aligned_cols=43 Identities=23% Similarity=0.348 Sum_probs=35.4
Q ss_pred HHHHHHHHhCCCCCcccccCCCCCCCCCCCchhHHHHHhhhhc
Q psy7970 14 ASIACFLAGNGADLSIKNKKGQTPLDLCPDPNLCKALTKCYKD 56 (290)
Q Consensus 14 ~aiacfL~~~Gadl~~~n~~g~tpldl~~d~~~~~~l~~~~~~ 56 (290)
..++-||++.|+|++.+|..|.|||+++..-...+.++-+.+.
T Consensus 39 ~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~ 81 (89)
T PF12796_consen 39 LEIVKLLLENGADINSQDKNGNTALHYAAENGNLEIVKLLLEH 81 (89)
T ss_dssp HHHHHHHHHTTTCTT-BSTTSSBHHHHHHHTTHHHHHHHHHHT
T ss_pred HHHHHHHHHhcccccccCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence 4788999999999999999999999999777777776666644
No 94
>KOG0804|consensus
Probab=92.08 E-value=0.16 Score=49.59 Aligned_cols=74 Identities=22% Similarity=0.507 Sum_probs=55.4
Q ss_pred CCCCCCCCccccccccCcc----eEeecCCCcccccchhhh--hccCCCCCCcc-hhhccccccccccccCCceEEeCCC
Q psy7970 72 TEDMVTLDECRICSDLKRD----ILFQPCGHVACCSVCAPR--VKKCLICREPV-EKRIKIEECMVCSLKKASVLFKPCY 144 (290)
Q Consensus 72 ~~~~~~~~~C~iC~~~~~~----~~~~PCgH~~~C~~Ca~~--~~~Cp~Cr~~i-~~~~~i~~C~~C~~~~~~~~~~PCg 144 (290)
....++...|.||+++--. ++-.+|.|..-|. |... ...||+||--- ++......|..|.-....++++-||
T Consensus 169 ~~~~tELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~-cl~~w~~~scpvcR~~q~p~~ve~~~c~~c~~~~~LwicliCg 247 (493)
T KOG0804|consen 169 PTGLTELPTCPVCLERMDSSTTGILTILCNHSFHCS-CLMKWWDSSCPVCRYCQSPSVVESSLCLACGCTEDLWICLICG 247 (493)
T ss_pred CCCcccCCCcchhHhhcCccccceeeeecccccchH-HHhhcccCcChhhhhhcCcchhhhhhhhhhcccccEEEEEEcc
Confidence 3456777899999987533 2456999997543 3333 36999999543 4455677999999999999999999
Q ss_pred Ce
Q psy7970 145 HM 146 (290)
Q Consensus 145 H~ 146 (290)
|.
T Consensus 248 ~v 249 (493)
T KOG0804|consen 248 NV 249 (493)
T ss_pred ce
Confidence 98
No 95
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=92.05 E-value=0.039 Score=51.89 Aligned_cols=44 Identities=32% Similarity=0.983 Sum_probs=33.5
Q ss_pred cCCCcccccccccccc---ccc--cCCccchHHHhcCC-----CCCCCcccccc
Q psy7970 242 KEQTMCPVCLDRLKNM---IFL--CGHGTCQMCGDRMS-----ECPICRKAVEK 285 (290)
Q Consensus 242 ~e~~~C~IC~~~~~~~---v~~--CGH~fC~~C~~~~~-----~CP~CR~~i~~ 285 (290)
.|+-+||.|++.+-.. .|+ ||...|+.|+...+ .||.||...+.
T Consensus 12 deed~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~d 65 (480)
T COG5175 12 DEEDYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYDD 65 (480)
T ss_pred cccccCcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhccc
Confidence 4555699999966443 554 99999999998653 79999987654
No 96
>KOG0515|consensus
Probab=91.94 E-value=0.15 Score=50.84 Aligned_cols=43 Identities=23% Similarity=0.272 Sum_probs=36.9
Q ss_pred HHHHHHHHhCCCCCcccccCCCCCCCCCCCchhHHHHHhhhhc
Q psy7970 14 ASIACFLAGNGADLSIKNKKGQTPLDLCPDPNLCKALTKCYKD 56 (290)
Q Consensus 14 ~aiacfL~~~Gadl~~~n~~g~tpldl~~d~~~~~~l~~~~~~ 56 (290)
+.|+-||+.+|||+|..|..|.|||+-++.-|-......+.+.
T Consensus 596 yeIVkFLi~~ganVNa~DSdGWTPLHCAASCNnv~~ckqLVe~ 638 (752)
T KOG0515|consen 596 YEIVKFLIEFGANVNAADSDGWTPLHCAASCNNVPMCKQLVES 638 (752)
T ss_pred hHHHHHHHhcCCcccCccCCCCchhhhhhhcCchHHHHHHHhc
Confidence 4799999999999999999999999999877766666666644
No 97
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=91.75 E-value=0.16 Score=37.38 Aligned_cols=27 Identities=30% Similarity=0.722 Sum_probs=20.2
Q ss_pred CceEEeCCCCeecchhhHhc----CCCCCCCC
Q psy7970 136 ASVLFKPCYHMVACESCASL----MKKCVQCR 163 (290)
Q Consensus 136 ~~~~~~PCgH~~~C~~Ca~~----~~~Cp~Cr 163 (290)
..++..+|||. +-..|..+ -..||.||
T Consensus 43 ~~i~~~~C~H~-FH~~Ci~~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 43 CPIVWGPCGHI-FHFHCISQWLKQNNTCPLCR 73 (73)
T ss_dssp S-EEEETTSEE-EEHHHHHHHHTTSSB-TTSS
T ss_pred cceEecccCCC-EEHHHHHHHHhcCCcCCCCC
Confidence 44567799999 88999963 46999998
No 98
>KOG0825|consensus
Probab=91.55 E-value=0.042 Score=56.72 Aligned_cols=45 Identities=24% Similarity=0.510 Sum_probs=37.5
Q ss_pred CCCcccccccccccccc----ccCCccchHHHhcCC----CCCCCcccccccc
Q psy7970 243 EQTMCPVCLDRLKNMIF----LCGHGTCQMCGDRMS----ECPICRKAVEKRI 287 (290)
Q Consensus 243 e~~~C~IC~~~~~~~v~----~CGH~fC~~C~~~~~----~CP~CR~~i~~~~ 287 (290)
....||+|+.-+.+-.. .|+|.||..|+..|. +||+||.-|.+.+
T Consensus 122 ~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~aqTCPiDR~EF~~v~ 174 (1134)
T KOG0825|consen 122 VENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRCAQTCPVDRGEFGEVK 174 (1134)
T ss_pred hhhhhhHHHHHHHHHhhccccccccccHHHHhhhhhhhcccCchhhhhhheee
Confidence 45689999998888733 399999999999984 7999999987654
No 99
>KOG0509|consensus
Probab=91.27 E-value=0.1 Score=52.61 Aligned_cols=48 Identities=25% Similarity=0.368 Sum_probs=35.9
Q ss_pred cchhHHHHHHHHHhCCCCCcccccCCCCCCCCCCCchhHHHHHhhhhc
Q psy7970 9 DKKSSASIACFLAGNGADLSIKNKKGQTPLDLCPDPNLCKALTKCYKD 56 (290)
Q Consensus 9 ~~~~~~aiacfL~~~Gadl~~~n~~g~tpldl~~d~~~~~~l~~~~~~ 56 (290)
-.+..+.++-+|+++|||++++|.+|-+||+|+..-.....++-++.+
T Consensus 120 ar~G~~~vv~lLlqhGAdpt~~D~~G~~~lHla~~~~~~~~vayll~~ 167 (600)
T KOG0509|consen 120 ARNGHISVVDLLLQHGADPTLKDKQGLTPLHLAAQFGHTALVAYLLSK 167 (600)
T ss_pred HHcCcHHHHHHHHHcCCCCceecCCCCcHHHHHHHhCchHHHHHHHHh
Confidence 346667899999999999999999999999999555444444444433
No 100
>KOG2113|consensus
Probab=91.25 E-value=0.21 Score=46.58 Aligned_cols=47 Identities=13% Similarity=0.092 Sum_probs=39.8
Q ss_pred cccccccccCCceEEeCCCCeecchhhHhcC--CCCCCCCcccccccce
Q psy7970 126 EECMVCSLKKASVLFKPCYHMVACESCASLM--KKCVQCRTQIDHMHPM 172 (290)
Q Consensus 126 ~~C~~C~~~~~~~~~~PCgH~~~C~~Ca~~~--~~Cp~Cr~~i~~~~~~ 172 (290)
.+|.+|.......+..||||..+|.+||... -.||.|..-+-..++|
T Consensus 344 ~~~~~~~~~~~st~~~~~~~n~~~~~~a~~s~~~~~~~c~~~~~~~~~i 392 (394)
T KOG2113|consen 344 LKGTSAGFGLLSTIWSGGNMNLSPGSLASASASPTSSTCDHNDHTLVPI 392 (394)
T ss_pred cccccccCceeeeEeecCCcccChhhhhhcccCCccccccccceeeeec
Confidence 3899999999999999999999999999743 5899998776666554
No 101
>KOG3039|consensus
Probab=90.86 E-value=0.17 Score=45.76 Aligned_cols=48 Identities=25% Similarity=0.553 Sum_probs=40.2
Q ss_pred cCCCcccccccccccc----cc-ccCCccchHHHhcC----CCCCCCcccccccccC
Q psy7970 242 KEQTMCPVCLDRLKNM----IF-LCGHGTCQMCGDRM----SECPICRKAVEKRILL 289 (290)
Q Consensus 242 ~e~~~C~IC~~~~~~~----v~-~CGH~fC~~C~~~~----~~CP~CR~~i~~~~~~ 289 (290)
.....||||.+.+.|. ++ +|||+||..|..++ ..+|+|-++...++.|
T Consensus 219 s~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~v~pv~d~plkdrdiI 275 (303)
T KOG3039|consen 219 SKRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDMVDPVTDKPLKDRDII 275 (303)
T ss_pred ccceecccchhhhcCccceEEeccCCcEeeHHHHHHhccccccccCCCCcCcccceE
Confidence 4679999999999997 33 39999999999987 3799999998776543
No 102
>KOG1814|consensus
Probab=90.86 E-value=0.15 Score=49.12 Aligned_cols=113 Identities=20% Similarity=0.420 Sum_probs=66.8
Q ss_pred ccccccccccC---CceEEeCCCCeecchhhHhc------------CCCCCCCCcccccccceeeecCCCCccccccCCC
Q psy7970 125 IEECMVCSLKK---ASVLFKPCYHMVACESCASL------------MKKCVQCRTQIDHMHPMVVCCGGPGIISEVQHTT 189 (290)
Q Consensus 125 i~~C~~C~~~~---~~~~~~PCgH~~~C~~Ca~~------------~~~Cp~Cr~~i~~~~~~~~~~~~~~~~~~~~~~~ 189 (290)
.+.|.||.+.. ...+|+||+|. .|..|+.. .-+||.+.-.-....
T Consensus 184 lf~C~ICf~e~~G~~c~~~lpC~Hv-~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C~~~a~~------------------- 243 (445)
T KOG1814|consen 184 LFDCCICFEEQMGQHCFKFLPCSHV-FCKSCLKDYFTIQIQEGQVSCLKCPDPKCGSVAPP------------------- 243 (445)
T ss_pred cccceeeehhhcCcceeeecccchH-HHHHHHHHHHHHhhhcceeeeecCCCCCCcccCCc-------------------
Confidence 47999998754 56899999999 99999942 136766553211100
Q ss_pred ChhhhhhhhccCCCCccchhhhccccccccccCCCCCChhHHHHHHHHHHhccCCCcccc--cccc-cccc----cc-c-
Q psy7970 190 DPAEEENAVALSPNTSAATLVEASTSGALMNNGSRDTSTSDIQKLQQQLQDIKEQTMCPV--CLDR-LKNM----IF-L- 260 (290)
Q Consensus 190 ~~~~e~n~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~l~e~~~C~I--C~~~-~~~~----v~-~- 260 (290)
...+|. + +..+ ...-+-..+++.++.+.+-..||- |... ..+| ++ .
T Consensus 244 g~vKel----------v--------g~EL-------~arYe~l~lqk~l~~msdv~yCPr~~Cq~p~~~d~~~~l~~Csk 298 (445)
T KOG1814|consen 244 GQVKEL----------V--------GDEL-------FARYEKLMLQKTLELMSDVVYCPRACCQLPVKQDPGRALAICSK 298 (445)
T ss_pred hHHHHH----------H--------HHHH-------HHHHHHHHHHHHHHhhcccccCChhhccCccccCchhhhhhhcc
Confidence 001110 0 0000 011122347788888888899987 6554 3444 22 2
Q ss_pred cCCccchHHHhcCCCCCCCccc
Q psy7970 261 CGHGTCQMCGDRMSECPICRKA 282 (290)
Q Consensus 261 CGH~fC~~C~~~~~~CP~CR~~ 282 (290)
|--.||..|..+|..=--|..+
T Consensus 299 CnFaFCtlCk~t~HG~s~Ck~~ 320 (445)
T KOG1814|consen 299 CNFAFCTLCKLTWHGVSPCKVK 320 (445)
T ss_pred CccHHHHHHHHhhcCCCcccCc
Confidence 7788999999887543334443
No 103
>PHA02741 hypothetical protein; Provisional
Probab=90.58 E-value=0.23 Score=41.89 Aligned_cols=27 Identities=30% Similarity=0.550 Sum_probs=14.0
Q ss_pred HHHHHHHh-CCCCCcccccCCCCCCCCC
Q psy7970 15 SIACFLAG-NGADLSIKNKKGQTPLDLC 41 (290)
Q Consensus 15 aiacfL~~-~Gadl~~~n~~g~tpldl~ 41 (290)
.++-||+. .|+|++.+|..|.|||+++
T Consensus 112 ~iv~~Ll~~~g~~~~~~n~~g~tpL~~A 139 (169)
T PHA02741 112 DLAEWLCCQPGIDLHFCNADNKSPFELA 139 (169)
T ss_pred HHHHHHHhCCCCCCCcCCCCCCCHHHHH
Confidence 34445554 3555555555555555555
No 104
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=89.94 E-value=0.11 Score=42.59 Aligned_cols=41 Identities=27% Similarity=0.796 Sum_probs=36.1
Q ss_pred Cccccccccccccccc-----cCCccchHHHhcCC-------CCCCCcccccc
Q psy7970 245 TMCPVCLDRLKNMIFL-----CGHGTCQMCGDRMS-------ECPICRKAVEK 285 (290)
Q Consensus 245 ~~C~IC~~~~~~~v~~-----CGH~fC~~C~~~~~-------~CP~CR~~i~~ 285 (290)
..|-||.|...+.-|+ ||...|-.|...+| .||.|+.+|.+
T Consensus 81 YeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKs 133 (140)
T PF05290_consen 81 YECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKS 133 (140)
T ss_pred eeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCcccccccc
Confidence 6899999999999663 99999999999876 69999998855
No 105
>PF04641 Rtf2: Rtf2 RING-finger
Probab=89.73 E-value=0.2 Score=45.82 Aligned_cols=48 Identities=19% Similarity=0.530 Sum_probs=38.7
Q ss_pred ccCCCcccccccccccc---cc--ccCCccchHHHhcCC---CCCCCccccccccc
Q psy7970 241 IKEQTMCPVCLDRLKNM---IF--LCGHGTCQMCGDRMS---ECPICRKAVEKRIL 288 (290)
Q Consensus 241 l~e~~~C~IC~~~~~~~---v~--~CGH~fC~~C~~~~~---~CP~CR~~i~~~~~ 288 (290)
....+.|||....+..- |+ +|||+|+..++..+. .||+|-++|...+.
T Consensus 110 ~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k~~~~Cp~c~~~f~~~Di 165 (260)
T PF04641_consen 110 SEGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELKKSKKCPVCGKPFTEEDI 165 (260)
T ss_pred CCceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhcccccccccCCccccCCE
Confidence 35679999999988542 33 499999999999876 79999999976543
No 106
>KOG2879|consensus
Probab=89.68 E-value=0.36 Score=44.35 Aligned_cols=52 Identities=25% Similarity=0.565 Sum_probs=40.2
Q ss_pred CCCCCCCCCCCCccccccccCcc-eEeecCCCcccccchhhhh------ccCCCCCCcch
Q psy7970 68 EGDGTEDMVTLDECRICSDLKRD-ILFQPCGHVACCSVCAPRV------KKCLICREPVE 120 (290)
Q Consensus 68 ~~~~~~~~~~~~~C~iC~~~~~~-~~~~PCgH~~~C~~Ca~~~------~~Cp~Cr~~i~ 120 (290)
++.+++..+...+|.+|-+.+.. .+..||||. .|..|...- -.||.|.+++.
T Consensus 229 p~~sss~~t~~~~C~~Cg~~PtiP~~~~~C~Hi-yCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 229 PKFSSSTGTSDTECPVCGEPPTIPHVIGKCGHI-YCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred CCcccccccCCceeeccCCCCCCCeeeccccce-eehhhhhhhhcchhhcccCccCCCCc
Confidence 44455667788899999988865 667789995 699998642 48999998775
No 107
>KOG3002|consensus
Probab=89.54 E-value=0.27 Score=46.03 Aligned_cols=49 Identities=29% Similarity=0.620 Sum_probs=38.6
Q ss_pred hhhccccccccccccCCceEEeC-CCCeecchhhH-hcCCCCCCCCcccccc
Q psy7970 120 EKRIKIEECMVCSLKKASVLFKP-CYHMVACESCA-SLMKKCVQCRTQIDHM 169 (290)
Q Consensus 120 ~~~~~i~~C~~C~~~~~~~~~~P-CgH~~~C~~Ca-~~~~~Cp~Cr~~i~~~ 169 (290)
.....+.+|.+|.+.....+|.- =||+ +|..|. ....+||.||.+|.+.
T Consensus 43 ~~~~~lleCPvC~~~l~~Pi~QC~nGHl-aCssC~~~~~~~CP~Cr~~~g~~ 93 (299)
T KOG3002|consen 43 LLDLDLLDCPVCFNPLSPPIFQCDNGHL-ACSSCRTKVSNKCPTCRLPIGNI 93 (299)
T ss_pred ccchhhccCchhhccCcccceecCCCcE-ehhhhhhhhcccCCccccccccH
Confidence 34566778888888777777773 3899 999999 6678999999998753
No 108
>KOG4412|consensus
Probab=89.04 E-value=0.36 Score=42.18 Aligned_cols=41 Identities=34% Similarity=0.394 Sum_probs=28.5
Q ss_pred HHHHHHHHhCCCCCcccccCCCCCCCCCCCchhHHHHHhhh
Q psy7970 14 ASIACFLAGNGADLSIKNKKGQTPLDLCPDPNLCKALTKCY 54 (290)
Q Consensus 14 ~aiacfL~~~Gadl~~~n~~g~tpldl~~d~~~~~~l~~~~ 54 (290)
..||-||+.+||.++++|+-|+|||+=++.-.-.+.+.-+.
T Consensus 119 ~eIaqlLle~ga~i~~kD~~~qtplHRAAavGklkvie~Li 159 (226)
T KOG4412|consen 119 LEIAQLLLEKGALIRIKDKQGQTPLHRAAAVGKLKVIEYLI 159 (226)
T ss_pred hhHHHHHHhcCCCCcccccccCchhHHHHhccchhhHHHHH
Confidence 36777888888888888888888887776555555544444
No 109
>KOG4159|consensus
Probab=88.86 E-value=0.2 Score=48.68 Aligned_cols=44 Identities=30% Similarity=0.603 Sum_probs=37.4
Q ss_pred cccccccccccCCceEEeCCCCeecchhhHh----cCCCCCCCCccccc
Q psy7970 124 KIEECMVCSLKKASVLFKPCYHMVACESCAS----LMKKCVQCRTQIDH 168 (290)
Q Consensus 124 ~i~~C~~C~~~~~~~~~~PCgH~~~C~~Ca~----~~~~Cp~Cr~~i~~ 168 (290)
+-++|.+|+......+.+||||. +|..|.. .-..||.||..+.+
T Consensus 83 sef~c~vc~~~l~~pv~tpcghs-~c~~Cl~r~ld~~~~cp~Cr~~l~e 130 (398)
T KOG4159|consen 83 SEFECCVCSRALYPPVVTPCGHS-FCLECLDRSLDQETECPLCRDELVE 130 (398)
T ss_pred chhhhhhhHhhcCCCcccccccc-ccHHHHHHHhccCCCCccccccccc
Confidence 35899999999999999999999 9999964 34799999987663
No 110
>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A.
Probab=88.63 E-value=0.06 Score=37.19 Aligned_cols=36 Identities=25% Similarity=0.385 Sum_probs=17.8
Q ss_pred HHhCC-CCCcccccCCCCCCCCCCCchhHHHHHhhhh
Q psy7970 20 LAGNG-ADLSIKNKKGQTPLDLCPDPNLCKALTKCYK 55 (290)
Q Consensus 20 L~~~G-adl~~~n~~g~tpldl~~d~~~~~~l~~~~~ 55 (290)
|+++| +|++.+|..|.|||+++.-......+..+.+
T Consensus 1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~ 37 (56)
T PF13857_consen 1 LLEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQ 37 (56)
T ss_dssp -----T--TT---TTS--HHHHHHHHT-HHHHHHHHH
T ss_pred CCccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHH
Confidence 67889 9999999999999999966666666666653
No 111
>KOG0508|consensus
Probab=88.48 E-value=0.29 Score=48.23 Aligned_cols=42 Identities=31% Similarity=0.464 Sum_probs=26.7
Q ss_pred HHHHHHHhCCCCCcccccCCCCCCCCCCCchhHHHHHhhhhc
Q psy7970 15 SIACFLAGNGADLSIKNKKGQTPLDLCPDPNLCKALTKCYKD 56 (290)
Q Consensus 15 aiacfL~~~Gadl~~~n~~g~tpldl~~d~~~~~~l~~~~~~ 56 (290)
-||-||.+.|||+|.+..+|.|.|+.+++....++++-+...
T Consensus 164 ~I~qyLle~gADvn~ks~kGNTALH~caEsG~vdivq~Ll~~ 205 (615)
T KOG0508|consen 164 DIAQYLLEQGADVNAKSYKGNTALHDCAESGSVDIVQLLLKH 205 (615)
T ss_pred HHHHHHHHhCCCcchhcccCchHHHhhhhcccHHHHHHHHhC
Confidence 466666666666666666666666666666666655555543
No 112
>KOG2231|consensus
Probab=88.41 E-value=0.22 Score=51.15 Aligned_cols=87 Identities=29% Similarity=0.757 Sum_probs=58.9
Q ss_pred ccccccccCcceEeecCCCcccccchhhhh----------ccCCCCCCcchhhcc---------c---cccccccccCCc
Q psy7970 80 ECRICSDLKRDILFQPCGHVACCSVCAPRV----------KKCLICREPVEKRIK---------I---EECMVCSLKKAS 137 (290)
Q Consensus 80 ~C~iC~~~~~~~~~~PCgH~~~C~~Ca~~~----------~~Cp~Cr~~i~~~~~---------i---~~C~~C~~~~~~ 137 (290)
-|.||-...--...--|||.-+|..|+.++ ..||+||..+....- + ..|-.+.+....
T Consensus 2 ~c~ic~~s~~~~~~~s~~h~~v~~~~~~R~~~~~~~~~~~~~~~vcr~~~~~~s~~~~~~~~~t~~~~~~~~~~~~e~~~ 81 (669)
T KOG2231|consen 2 SCAICAFSPDFVGRGSCGHNEVCATCVVRLRFELNNRKCSNECPVCRREVETKSNGDSSDAVGTFPEGRKCDFDEHEDTC 81 (669)
T ss_pred CcceeecCccccccccccccccchhhhhhhhhhcccccccccCcccccceeeecccccccccccccccccccccccccee
Confidence 377787777767777899999999999876 356999986654221 0 133444444444
Q ss_pred eEE----------eCCCCeecchhhHhcC------CCCCCCCccccc
Q psy7970 138 VLF----------KPCYHMVACESCASLM------KKCVQCRTQIDH 168 (290)
Q Consensus 138 ~~~----------~PCgH~~~C~~Ca~~~------~~Cp~Cr~~i~~ 168 (290)
++| .+|-|. .|..|..+. +.|++| ..+..
T Consensus 82 ~if~~d~~~y~~~~~~~~~-~C~~C~~~~~~~~~~~~~~~c-~~~~s 126 (669)
T KOG2231|consen 82 VIFFADKLTYTKLEACLHH-SCHICDRRFRALYNKKECLHC-TEFKS 126 (669)
T ss_pred eeeeccccHHHHHHHHHhh-hcCccccchhhhcccCCCccc-cchhH
Confidence 444 688887 888888655 478888 44433
No 113
>KOG1002|consensus
Probab=88.23 E-value=0.16 Score=50.54 Aligned_cols=43 Identities=28% Similarity=0.753 Sum_probs=35.8
Q ss_pred cCCCccccccccccccccc-cCCccchHHHhcC---------CCCCCCccccc
Q psy7970 242 KEQTMCPVCLDRLKNMIFL-CGHGTCQMCGDRM---------SECPICRKAVE 284 (290)
Q Consensus 242 ~e~~~C~IC~~~~~~~v~~-CGH~fC~~C~~~~---------~~CP~CR~~i~ 284 (290)
++...|.+|.|.-.+++.. |.|.||+.|+... .+||.|..+++
T Consensus 534 k~~~~C~lc~d~aed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~Ls 586 (791)
T KOG1002|consen 534 KGEVECGLCHDPAEDYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLS 586 (791)
T ss_pred cCceeecccCChhhhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCcccccccc
Confidence 4567999999999999665 9999999999653 37999987764
No 114
>PHA02798 ankyrin-like protein; Provisional
Probab=87.59 E-value=0.28 Score=48.51 Aligned_cols=41 Identities=20% Similarity=0.143 Sum_probs=29.2
Q ss_pred HHHHHHHhCCCCCcccccCCCCCCCCCCCchhHHHHHhhhh
Q psy7970 15 SIACFLAGNGADLSIKNKKGQTPLDLCPDPNLCKALTKCYK 55 (290)
Q Consensus 15 aiacfL~~~Gadl~~~n~~g~tpldl~~d~~~~~~l~~~~~ 55 (290)
.++-+|++.|||++++|..|+|||+++........+..+.+
T Consensus 272 ~~v~~LL~~GAdin~~d~~G~TpL~~A~~~~~~~iv~~lL~ 312 (489)
T PHA02798 272 KIFEYLLQLGGDINIITELGNTCLFTAFENESKFIFNSILN 312 (489)
T ss_pred HHHHHHHHcCCcccccCCCCCcHHHHHHHcCcHHHHHHHHc
Confidence 56778888888888888888888888765555555555543
No 115
>KOG4628|consensus
Probab=86.87 E-value=0.85 Score=43.51 Aligned_cols=46 Identities=22% Similarity=0.530 Sum_probs=32.7
Q ss_pred CccccccccCcc---eEeecCCCcccccchhhh-----hccCCCCCCcchhhccc
Q psy7970 79 DECRICSDLKRD---ILFQPCGHVACCSVCAPR-----VKKCLICREPVEKRIKI 125 (290)
Q Consensus 79 ~~C~iC~~~~~~---~~~~PCgH~~~C~~Ca~~-----~~~Cp~Cr~~i~~~~~i 125 (290)
..|.||+|.-.. +..+||.|..-+ .|-+. -+.||+|++.|......
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~-~CIDpWL~~~r~~CPvCK~di~~~~~~ 283 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHV-NCIDPWLTQTRTFCPVCKRDIRTDSGS 283 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhh-ccchhhHhhcCccCCCCCCcCCCCCCC
Confidence 589999987654 677999998642 23221 14599999988766654
No 116
>PHA02736 Viral ankyrin protein; Provisional
Probab=86.25 E-value=0.48 Score=39.03 Aligned_cols=40 Identities=25% Similarity=0.210 Sum_probs=29.5
Q ss_pred HHHHHHHhCCCCCccccc-CCCCCCCCCCCchhHHHHHhhh
Q psy7970 15 SIACFLAGNGADLSIKNK-KGQTPLDLCPDPNLCKALTKCY 54 (290)
Q Consensus 15 aiacfL~~~Gadl~~~n~-~g~tpldl~~d~~~~~~l~~~~ 54 (290)
.++.||++.|||++.+|. .|.|||+++.-....+.+..+.
T Consensus 72 e~v~~Ll~~gadin~~~~~~g~T~Lh~A~~~~~~~i~~~Ll 112 (154)
T PHA02736 72 EKLKLLMEWGADINGKERVFGNTPLHIAVYTQNYELATWLC 112 (154)
T ss_pred HHHHHHHHcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHH
Confidence 567889999999999884 8999999885444444444444
No 117
>PHA02743 Viral ankyrin protein; Provisional
Probab=86.19 E-value=0.55 Score=39.60 Aligned_cols=35 Identities=20% Similarity=0.304 Sum_probs=20.4
Q ss_pred HHHHHhCCCCCcccc-cCCCCCCCCCCCchhHHHHH
Q psy7970 17 ACFLAGNGADLSIKN-KKGQTPLDLCPDPNLCKALT 51 (290)
Q Consensus 17 acfL~~~Gadl~~~n-~~g~tpldl~~d~~~~~~l~ 51 (290)
+-||++.|||++.++ ..|+|||.++......+.+.
T Consensus 76 i~~Ll~~Gadin~~d~~~g~TpLh~A~~~g~~~iv~ 111 (166)
T PHA02743 76 IELLVNMGADINARELGTGNTLLHIAASTKNYELAE 111 (166)
T ss_pred HHHHHHcCCCCCCCCCCCCCcHHHHHHHhCCHHHHH
Confidence 566667777776666 36677776664333333333
No 118
>PHA02795 ankyrin-like protein; Provisional
Probab=86.09 E-value=0.35 Score=47.66 Aligned_cols=45 Identities=11% Similarity=-0.018 Sum_probs=38.0
Q ss_pred HHHHHHHHhCCCCCcccccCCCCCCCCCCCchhHHHHHhhhhccc
Q psy7970 14 ASIACFLAGNGADLSIKNKKGQTPLDLCPDPNLCKALTKCYKDKE 58 (290)
Q Consensus 14 ~aiacfL~~~Gadl~~~n~~g~tpldl~~d~~~~~~l~~~~~~~~ 58 (290)
.-++-||++.|||++.+|..|+|||.++...+..+.+.-+.+...
T Consensus 201 ~eIve~LIs~GADIN~kD~~G~TpLh~Aa~~g~~eiVelLL~~GA 245 (437)
T PHA02795 201 LEIYKLCIPYIEDINQLDAGGRTLLYRAIYAGYIDLVSWLLENGA 245 (437)
T ss_pred HHHHHHHHhCcCCcCcCCCCCCCHHHHHHHcCCHHHHHHHHHCCC
Confidence 478999999999999999999999999977777777777765543
No 119
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=85.85 E-value=0.31 Score=33.28 Aligned_cols=39 Identities=28% Similarity=0.613 Sum_probs=20.0
Q ss_pred CCccccccccccccccc--cCCccchHHHh--------cCCCCCCCccc
Q psy7970 244 QTMCPVCLDRLKNMIFL--CGHGTCQMCGD--------RMSECPICRKA 282 (290)
Q Consensus 244 ~~~C~IC~~~~~~~v~~--CGH~fC~~C~~--------~~~~CP~CR~~ 282 (290)
.+.|||-...+..|+.. |.|.-|.+=.. ..|.||+|.++
T Consensus 2 sL~CPls~~~i~~P~Rg~~C~H~~CFDl~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 2 SLRCPLSFQRIRIPVRGKNCKHLQCFDLESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp ESB-TTTSSB-SSEEEETT--SS--EEHHHHHHHHHHS---B-TTT---
T ss_pred eeeCCCCCCEEEeCccCCcCcccceECHHHHHHHhhccCCeECcCCcCc
Confidence 46899999999999884 99986643321 23789999864
No 120
>KOG0505|consensus
Probab=85.73 E-value=0.76 Score=45.77 Aligned_cols=41 Identities=29% Similarity=0.392 Sum_probs=33.9
Q ss_pred HHHHHHHHHhCCCCCcccccCCCCCCCCCCCchhHHHHHhh
Q psy7970 13 SASIACFLAGNGADLSIKNKKGQTPLDLCPDPNLCKALTKC 53 (290)
Q Consensus 13 ~~aiacfL~~~Gadl~~~n~~g~tpldl~~d~~~~~~l~~~ 53 (290)
.++|++||++.||++.+.|..|-.|+|++.++.-...+...
T Consensus 118 ~~~i~~~li~~gA~~~avNsdg~~P~dl~e~ea~~~~l~~~ 158 (527)
T KOG0505|consen 118 YLNIVEYLIQHGANLLAVNSDGNMPYDLAEDEATLDVLETE 158 (527)
T ss_pred cHHHHHHHHHhhhhhhhccCCCCCccccccCcchhHHHHHH
Confidence 45999999999999999999999999999887655544433
No 121
>KOG1813|consensus
Probab=85.66 E-value=0.4 Score=44.47 Aligned_cols=45 Identities=27% Similarity=0.500 Sum_probs=38.6
Q ss_pred ccccccccccCCceEEeCCCCeecchhhHhc----CCCCCCCCccccccc
Q psy7970 125 IEECMVCSLKKASVLFKPCYHMVACESCASL----MKKCVQCRTQIDHMH 170 (290)
Q Consensus 125 i~~C~~C~~~~~~~~~~PCgH~~~C~~Ca~~----~~~Cp~Cr~~i~~~~ 170 (290)
+..|.+|.....+.|..-|||. +|..|+.. ..+|++|.+++....
T Consensus 241 Pf~c~icr~~f~~pVvt~c~h~-fc~~ca~~~~qk~~~c~vC~~~t~g~~ 289 (313)
T KOG1813|consen 241 PFKCFICRKYFYRPVVTKCGHY-FCEVCALKPYQKGEKCYVCSQQTHGSF 289 (313)
T ss_pred CccccccccccccchhhcCCce-eehhhhccccccCCcceeccccccccc
Confidence 3689999999999999999999 99999954 368999999876654
No 122
>PHA02736 Viral ankyrin protein; Provisional
Probab=85.56 E-value=0.34 Score=39.94 Aligned_cols=40 Identities=20% Similarity=0.254 Sum_probs=28.7
Q ss_pred HHHHHHHh-CCCCCcccccCCCCCCCCCCCchhHHHHHhhh
Q psy7970 15 SIACFLAG-NGADLSIKNKKGQTPLDLCPDPNLCKALTKCY 54 (290)
Q Consensus 15 aiacfL~~-~Gadl~~~n~~g~tpldl~~d~~~~~~l~~~~ 54 (290)
.++-||+. .|+|++.+|..|+|||.++......+.+..+.
T Consensus 106 ~i~~~Ll~~~g~d~n~~~~~g~tpL~~A~~~~~~~i~~~Ll 146 (154)
T PHA02736 106 ELATWLCNQPGVNMEILNYAFKTPYYVACERHDAKMMNILR 146 (154)
T ss_pred HHHHHHHhCCCCCCccccCCCCCHHHHHHHcCCHHHHHHHH
Confidence 55677876 48898888888999988886655555444444
No 123
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=85.55 E-value=0.51 Score=34.02 Aligned_cols=41 Identities=24% Similarity=0.576 Sum_probs=21.0
Q ss_pred ccccccccccCCceE-EeCCCCeecchhhHhcC--CCCCCCCccc
Q psy7970 125 IEECMVCSLKKASVL-FKPCYHMVACESCASLM--KKCVQCRTQI 166 (290)
Q Consensus 125 i~~C~~C~~~~~~~~-~~PCgH~~~C~~Ca~~~--~~Cp~Cr~~i 166 (290)
.-.|.+|.+.....+ +.-|.|. +|..|+... ..||.|+.+-
T Consensus 7 lLrCs~C~~~l~~pv~l~~CeH~-fCs~Ci~~~~~~~CPvC~~Pa 50 (65)
T PF14835_consen 7 LLRCSICFDILKEPVCLGGCEHI-FCSSCIRDCIGSECPVCHTPA 50 (65)
T ss_dssp TTS-SSS-S--SS-B---SSS---B-TTTGGGGTTTB-SSS--B-
T ss_pred hcCCcHHHHHhcCCceeccCccH-HHHHHhHHhcCCCCCCcCChH
Confidence 346777877666664 5679999 999999754 6899999873
No 124
>PHA03095 ankyrin-like protein; Provisional
Probab=85.36 E-value=0.43 Score=46.43 Aligned_cols=40 Identities=28% Similarity=0.281 Sum_probs=22.5
Q ss_pred HHHHHHHhCCCCCcccccCCCCCCCCCCCchhHHHHHhhh
Q psy7970 15 SIACFLAGNGADLSIKNKKGQTPLDLCPDPNLCKALTKCY 54 (290)
Q Consensus 15 aiacfL~~~Gadl~~~n~~g~tpldl~~d~~~~~~l~~~~ 54 (290)
.++-+|+..|+|++.+|..|+|||+++....-.+.+..+.
T Consensus 238 ~~v~~ll~~g~din~~d~~g~TpLh~A~~~~~~~~v~~LL 277 (471)
T PHA03095 238 SLVLPLLIAGISINARNRYGQTPLHYAAVFNNPRACRRLI 277 (471)
T ss_pred HHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 3555666666666666666666666664443333333333
No 125
>PHA02791 ankyrin-like protein; Provisional
Probab=84.93 E-value=0.46 Score=44.10 Aligned_cols=42 Identities=26% Similarity=0.206 Sum_probs=32.1
Q ss_pred HHHHHHHhCCCCCcccccCCCCCCCCCCCchhHHHHHhhhhc
Q psy7970 15 SIACFLAGNGADLSIKNKKGQTPLDLCPDPNLCKALTKCYKD 56 (290)
Q Consensus 15 aiacfL~~~Gadl~~~n~~g~tpldl~~d~~~~~~l~~~~~~ 56 (290)
.++-+|++.|||++.+|..|+|||+++......+.+..+.+.
T Consensus 75 eiV~lLL~~Gadvn~~d~~G~TpLh~Aa~~g~~eivk~Ll~~ 116 (284)
T PHA02791 75 KIVKILLFSGMDDSQFDDKGNTALYYAVDSGNMQTVKLFVKK 116 (284)
T ss_pred HHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHC
Confidence 567788888888888888888888888777666666666543
No 126
>KOG1039|consensus
Probab=84.81 E-value=0.47 Score=45.25 Aligned_cols=47 Identities=28% Similarity=0.596 Sum_probs=39.1
Q ss_pred ccccccccccCCceE-----E---eCCCCeecchhhHhc-----------CCCCCCCCcccccccce
Q psy7970 125 IEECMVCSLKKASVL-----F---KPCYHMVACESCASL-----------MKKCVQCRTQIDHMHPM 172 (290)
Q Consensus 125 i~~C~~C~~~~~~~~-----~---~PCgH~~~C~~Ca~~-----------~~~Cp~Cr~~i~~~~~~ 172 (290)
-..|.||++...... | .+|.|. .|..|... .+.||+||++...+.+-
T Consensus 161 ~k~CGICme~i~ek~~~~~rfgilpnC~H~-~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~v~pS 226 (344)
T KOG1039|consen 161 EKECGICMETINEKAASERRFGILPNCNHS-FCLNCIRKWRQATQFESKTSKSCPFCRVPSSFVNPS 226 (344)
T ss_pred cccceehhhhccccchhhhhcccCCCcchh-hhhcHhHhhhhhhccccccccCCCcccCcccccccc
Confidence 469999999988887 6 679999 99999942 47999999998777653
No 127
>KOG2932|consensus
Probab=84.65 E-value=0.45 Score=44.42 Aligned_cols=54 Identities=24% Similarity=0.592 Sum_probs=39.0
Q ss_pred ccccccccccCCce-EEeCCCCeecchhhHhc--CCCCCCCCccccccc-----ceeeecCCC
Q psy7970 125 IEECMVCSLKKASV-LFKPCYHMVACESCASL--MKKCVQCRTQIDHMH-----PMVVCCGGP 179 (290)
Q Consensus 125 i~~C~~C~~~~~~~-~~~PCgH~~~C~~Ca~~--~~~Cp~Cr~~i~~~~-----~~~~~~~~~ 179 (290)
+-.|..|.-.+... .++||.|+ +|.+||.. .|.||.|...|.++. .+|+|.+..
T Consensus 90 VHfCd~Cd~PI~IYGRmIPCkHv-FCl~CAr~~~dK~Cp~C~d~VqrIeq~~~g~iFmC~~~~ 151 (389)
T KOG2932|consen 90 VHFCDRCDFPIAIYGRMIPCKHV-FCLECARSDSDKICPLCDDRVQRIEQIMMGGIFMCAAPH 151 (389)
T ss_pred eEeecccCCcceeeecccccchh-hhhhhhhcCccccCcCcccHHHHHHHhcccceEEeecch
Confidence 45677775543322 56899999 99999964 679999998887754 357777554
No 128
>PHA02730 ankyrin-like protein; Provisional
Probab=84.48 E-value=0.56 Score=48.60 Aligned_cols=32 Identities=16% Similarity=0.301 Sum_probs=28.2
Q ss_pred cchhHHHHHHHHHhCCCCCcccccCCCCCCCC
Q psy7970 9 DKKSSASIACFLAGNGADLSIKNKKGQTPLDL 40 (290)
Q Consensus 9 ~~~~~~aiacfL~~~Gadl~~~n~~g~tpldl 40 (290)
+.+.+.-||-||+++|||++.+|..|.|||++
T Consensus 210 ~~~n~~eiv~lLIs~GadIN~kd~~G~TpLh~ 241 (672)
T PHA02730 210 SESLSKDVIKCLIDNNVSIHGRDEGGSLPIQY 241 (672)
T ss_pred hhccCHHHHHHHHHCCCCCCCCCCCCCCHHHH
Confidence 44456689999999999999999999999984
No 129
>KOG1001|consensus
Probab=84.38 E-value=0.31 Score=50.52 Aligned_cols=41 Identities=32% Similarity=0.951 Sum_probs=33.5
Q ss_pred Cccccccccccccccc-cCCccchHHHhcCC------CCCCCccccccc
Q psy7970 245 TMCPVCLDRLKNMIFL-CGHGTCQMCGDRMS------ECPICRKAVEKR 286 (290)
Q Consensus 245 ~~C~IC~~~~~~~v~~-CGH~fC~~C~~~~~------~CP~CR~~i~~~ 286 (290)
..|+||++ ...+++. |||.||..|+...+ .||.||..+...
T Consensus 455 ~~c~ic~~-~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~ 502 (674)
T KOG1001|consen 455 HWCHICCD-LDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKEK 502 (674)
T ss_pred cccccccc-cccceeecccchHHHHHHHhccccccCCCCcHHHHHHHHH
Confidence 99999999 5556554 99999999999763 599999877543
No 130
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=84.23 E-value=0.62 Score=44.61 Aligned_cols=39 Identities=23% Similarity=0.572 Sum_probs=29.7
Q ss_pred cccccccc-------------CCceEEeCCCCeecchhhHh----cCCCCCCCCccc
Q psy7970 127 ECMVCSLK-------------KASVLFKPCYHMVACESCAS----LMKKCVQCRTQI 166 (290)
Q Consensus 127 ~C~~C~~~-------------~~~~~~~PCgH~~~C~~Ca~----~~~~Cp~Cr~~i 166 (290)
-|.+|+|. ..+..-+||||. .=-.|.. |.+.||+||.++
T Consensus 289 ~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHi-lHl~CLknW~ERqQTCPICr~p~ 344 (491)
T COG5243 289 TCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHI-LHLHCLKNWLERQQTCPICRRPV 344 (491)
T ss_pred eEEEecccccCCCCccCcccccCCcccccccce-eeHHHHHHHHHhccCCCcccCcc
Confidence 68888775 123467899998 5578884 679999999984
No 131
>PHA02730 ankyrin-like protein; Provisional
Probab=83.83 E-value=0.5 Score=48.92 Aligned_cols=42 Identities=14% Similarity=0.101 Sum_probs=33.3
Q ss_pred HHHHHHHhCCCCCcccccCCCCCCCCCCCchhHHHHHhhhhc
Q psy7970 15 SIACFLAGNGADLSIKNKKGQTPLDLCPDPNLCKALTKCYKD 56 (290)
Q Consensus 15 aiacfL~~~Gadl~~~n~~g~tpldl~~d~~~~~~l~~~~~~ 56 (290)
.++=||+++|||++++|..|+|||.++..-.-.+.+.-+...
T Consensus 443 ~ivk~LIs~GADINakD~~G~TPLh~Aa~~~~~eive~LI~~ 484 (672)
T PHA02730 443 DVFDILSKYMDDIDMIDNENKTLLYYAVDVNNIQFARRLLEY 484 (672)
T ss_pred HHHHHHHhcccchhccCCCCCCHHHHHHHhCCHHHHHHHHHC
Confidence 468999999999999999999999999665555555444433
No 132
>KOG0802|consensus
Probab=83.37 E-value=0.48 Score=47.92 Aligned_cols=40 Identities=33% Similarity=0.603 Sum_probs=33.6
Q ss_pred ccccccccccCCc-----eEEeCCCCeecchhhHh----cCCCCCCCCcc
Q psy7970 125 IEECMVCSLKKAS-----VLFKPCYHMVACESCAS----LMKKCVQCRTQ 165 (290)
Q Consensus 125 i~~C~~C~~~~~~-----~~~~PCgH~~~C~~Ca~----~~~~Cp~Cr~~ 165 (290)
...|.||.+.... +..+||||. ++..|.. +...||.||..
T Consensus 291 ~~~C~IC~e~l~~~~~~~~~rL~C~Hi-fh~~CL~~W~er~qtCP~CR~~ 339 (543)
T KOG0802|consen 291 DELCIICLEELHSGHNITPKRLPCGHI-FHDSCLRSWFERQQTCPTCRTV 339 (543)
T ss_pred CCeeeeechhhccccccccceeecccc-hHHHHHHHHHHHhCcCCcchhh
Confidence 3578888887666 799999999 9999995 56899999984
No 133
>PHA02743 Viral ankyrin protein; Provisional
Probab=83.00 E-value=0.57 Score=39.48 Aligned_cols=27 Identities=22% Similarity=0.418 Sum_probs=16.1
Q ss_pred HHHHHHhCCCCCcccccCCCCCCCCCC
Q psy7970 16 IACFLAGNGADLSIKNKKGQTPLDLCP 42 (290)
Q Consensus 16 iacfL~~~Gadl~~~n~~g~tpldl~~ 42 (290)
++-||.+.|++++.+|..|+|||+++.
T Consensus 39 ~~~~l~~~g~~~~~~d~~g~t~Lh~Aa 65 (166)
T PHA02743 39 VAPFISGDGHLLHRYDHHGRQCTHMVA 65 (166)
T ss_pred HHHHHhhcchhhhccCCCCCcHHHHHH
Confidence 444556666666666666666666653
No 134
>PHA02989 ankyrin repeat protein; Provisional
Probab=82.88 E-value=0.61 Score=46.21 Aligned_cols=27 Identities=26% Similarity=0.261 Sum_probs=14.3
Q ss_pred HHHHHHhCCCCCcccccCCCCCCCCCC
Q psy7970 16 IACFLAGNGADLSIKNKKGQTPLDLCP 42 (290)
Q Consensus 16 iacfL~~~Gadl~~~n~~g~tpldl~~ 42 (290)
++-+|++.|||++.+|..|.|||+++.
T Consensus 271 ~v~~LL~~Gadin~~d~~G~TpL~~A~ 297 (494)
T PHA02989 271 AFNYLLKLGDDIYNVSKDGDTVLTYAI 297 (494)
T ss_pred HHHHHHHcCCCccccCCCCCCHHHHHH
Confidence 444555555555555555555555553
No 135
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=82.58 E-value=0.4 Score=46.20 Aligned_cols=82 Identities=24% Similarity=0.420 Sum_probs=0.0
Q ss_pred cCcceEeecCCCcccccchh------hhhccCCCCCCcchhhcccc--ccccccc-cCCceEEeCCCCeecchhhHh---
Q psy7970 87 LKRDILFQPCGHVACCSVCA------PRVKKCLICREPVEKRIKIE--ECMVCSL-KKASVLFKPCYHMVACESCAS--- 154 (290)
Q Consensus 87 ~~~~~~~~PCgH~~~C~~Ca------~~~~~Cp~Cr~~i~~~~~i~--~C~~C~~-~~~~~~~~PCgH~~~C~~Ca~--- 154 (290)
.+.--+++-|||+---..=. ...+.||+||+.=.-+.-.. +=....| .+.+.+|.||||++. +.-+.
T Consensus 300 ~~qP~VYl~CGHVhG~h~Wg~~~~~~~~~r~CPlCr~~g~~V~L~mG~E~afyvD~~~pthaF~PCGHv~S-ekTa~yWs 378 (416)
T PF04710_consen 300 ERQPWVYLNCGHVHGYHNWGQDSDRDPRSRTCPLCRQVGPYVPLWMGCEPAFYVDSGPPTHAFNPCGHVCS-EKTAKYWS 378 (416)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccCceeeccccceeeecccccccccccccccCCCccccCCceeEeeccccceeecCCCCceeecccccccc-hhhhhhhh
Confidence 34557888999976322211 12579999998654311110 1111233 456779999999943 54442
Q ss_pred --cC--------CCCCCCCcccccc
Q psy7970 155 --LM--------KKCVQCRTQIDHM 169 (290)
Q Consensus 155 --~~--------~~Cp~Cr~~i~~~ 169 (290)
.+ -.||+|-.+++..
T Consensus 379 ~i~lPhGt~~f~a~CPFCa~~L~g~ 403 (416)
T PF04710_consen 379 QIPLPHGTHAFHAACPFCATPLDGE 403 (416)
T ss_dssp -------------------------
T ss_pred cCCCCCCcccccccCCcccCcccCC
Confidence 11 3899999998754
No 136
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=82.29 E-value=0.46 Score=36.73 Aligned_cols=32 Identities=41% Similarity=0.678 Sum_probs=26.3
Q ss_pred hccCCCccccccccccccc---cccCCccchHHHh
Q psy7970 240 DIKEQTMCPVCLDRLKNMI---FLCGHGTCQMCGD 271 (290)
Q Consensus 240 ~l~e~~~C~IC~~~~~~~v---~~CGH~fC~~C~~ 271 (290)
.+.+...|+||...+.+.+ ++|||.|-..|+.
T Consensus 74 ~i~~~~~C~vC~k~l~~~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 74 VITESTKCSVCGKPLGNSVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred EECCCCCccCcCCcCCCceEEEeCCCeEEeccccc
Confidence 5577789999999998874 4699999888875
No 137
>PHA03100 ankyrin repeat protein; Provisional
Probab=82.16 E-value=0.76 Score=44.86 Aligned_cols=41 Identities=22% Similarity=0.254 Sum_probs=23.0
Q ss_pred HHHHHHHHhCCCCCcccccCCCCCCCCCCCchhHHHHHhhh
Q psy7970 14 ASIACFLAGNGADLSIKNKKGQTPLDLCPDPNLCKALTKCY 54 (290)
Q Consensus 14 ~aiacfL~~~Gadl~~~n~~g~tpldl~~d~~~~~~l~~~~ 54 (290)
..++-+|++.|||++.+|..|.|||+++......+.+.-+.
T Consensus 230 ~~iv~~Ll~~g~din~~d~~g~TpL~~A~~~~~~~iv~~Ll 270 (480)
T PHA03100 230 LEVVNYLLSYGVPINIKDVYGFTPLHYAVYNNNPEFVKYLL 270 (480)
T ss_pred HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 45566666666666666666666666664433333333333
No 138
>KOG0195|consensus
Probab=81.80 E-value=1.2 Score=41.63 Aligned_cols=40 Identities=43% Similarity=0.468 Sum_probs=32.7
Q ss_pred HHHHHHhCCCCCcccccCCCCCCCCCCCchhHHHHHhhhhc
Q psy7970 16 IACFLAGNGADLSIKNKKGQTPLDLCPDPNLCKALTKCYKD 56 (290)
Q Consensus 16 iacfL~~~Gadl~~~n~~g~tpldl~~d~~~~~~l~~~~~~ 56 (290)
||==|+++||-+++-|++|.||||-+. |.+.+.|....++
T Consensus 115 iaedli~~ga~v~icnk~g~tpldkak-p~l~~~l~e~aek 154 (448)
T KOG0195|consen 115 IAEDLISCGAAVNICNKKGMTPLDKAK-PMLKNTLLEIAEK 154 (448)
T ss_pred HHHHHHhccceeeecccCCCCchhhhc-hHHHHHHHHHHHH
Confidence 444589999999999999999999764 6778887777665
No 139
>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....
Probab=81.79 E-value=1.5 Score=26.48 Aligned_cols=20 Identities=25% Similarity=0.486 Sum_probs=17.3
Q ss_pred HHHHHHHHHhCCCCCccccc
Q psy7970 13 SASIACFLAGNGADLSIKNK 32 (290)
Q Consensus 13 ~~aiacfL~~~Gadl~~~n~ 32 (290)
...++-+|+++|||++++|.
T Consensus 14 ~~~~v~~Ll~~ga~~~~~d~ 33 (33)
T PF00023_consen 14 HPDIVKLLLKHGADINARDN 33 (33)
T ss_dssp CHHHHHHHHHTTSCTTCBCT
T ss_pred HHHHHHHHHHCcCCCCCCCC
Confidence 45789999999999998874
No 140
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=81.77 E-value=1 Score=41.98 Aligned_cols=40 Identities=33% Similarity=0.679 Sum_probs=31.8
Q ss_pred ccccccccc---CCceEEeCCCCeecchhhHhcC-----CCCCCCCccc
Q psy7970 126 EECMVCSLK---KASVLFKPCYHMVACESCASLM-----KKCVQCRTQI 166 (290)
Q Consensus 126 ~~C~~C~~~---~~~~~~~PCgH~~~C~~Ca~~~-----~~Cp~Cr~~i 166 (290)
.+|.+|+.. ...+..+||.|. +=..|..+. .+||.||.+|
T Consensus 324 veCaICms~fiK~d~~~vlPC~H~-FH~~Cv~kW~~~y~~~CPvCrt~i 371 (374)
T COG5540 324 VECAICMSNFIKNDRLRVLPCDHR-FHVGCVDKWLLGYSNKCPVCRTAI 371 (374)
T ss_pred ceEEEEhhhhcccceEEEeccCce-echhHHHHHHhhhcccCCccCCCC
Confidence 599999874 334688999999 668888653 5999999875
No 141
>PHA02741 hypothetical protein; Provisional
Probab=81.23 E-value=0.83 Score=38.46 Aligned_cols=41 Identities=24% Similarity=0.223 Sum_probs=31.9
Q ss_pred HHHHHHHHhCCCCCccccc-CCCCCCCCCCCchhHHHHHhhh
Q psy7970 14 ASIACFLAGNGADLSIKNK-KGQTPLDLCPDPNLCKALTKCY 54 (290)
Q Consensus 14 ~aiacfL~~~Gadl~~~n~-~g~tpldl~~d~~~~~~l~~~~ 54 (290)
.-++-+|++.|||++.+|. .|.|||+++...+..+.+..+.
T Consensus 77 ~~ii~~Ll~~gadin~~~~~~g~TpLh~A~~~~~~~iv~~Ll 118 (169)
T PHA02741 77 AEIIDHLIELGADINAQEMLEGDTALHLAAHRRDHDLAEWLC 118 (169)
T ss_pred HHHHHHHHHcCCCCCCCCcCCCCCHHHHHHHcCCHHHHHHHH
Confidence 3567789999999999986 8999999986666555555554
No 142
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=81.20 E-value=2 Score=31.38 Aligned_cols=44 Identities=11% Similarity=-0.046 Sum_probs=32.3
Q ss_pred ccccccccccCCceEEeCCCCeecchhhHhc-----CCCCCCCCcccccc
Q psy7970 125 IEECMVCSLKKASVLFKPCYHMVACESCASL-----MKKCVQCRTQIDHM 169 (290)
Q Consensus 125 i~~C~~C~~~~~~~~~~PCgH~~~C~~Ca~~-----~~~Cp~Cr~~i~~~ 169 (290)
.+.|.++.+-..+.+++|+||. +...+..+ ...||.+++++...
T Consensus 4 ~f~CpIt~~lM~dPVi~~~G~t-yer~~I~~~l~~~~~~~P~t~~~l~~~ 52 (73)
T PF04564_consen 4 EFLCPITGELMRDPVILPSGHT-YERSAIERWLEQNGGTDPFTRQPLSES 52 (73)
T ss_dssp GGB-TTTSSB-SSEEEETTSEE-EEHHHHHHHHCTTSSB-TTT-SB-SGG
T ss_pred ccCCcCcCcHhhCceeCCcCCE-EcHHHHHHHHHcCCCCCCCCCCcCCcc
Confidence 4679999999999999999977 99999853 46799999887653
No 143
>PHA02859 ankyrin repeat protein; Provisional
Probab=80.84 E-value=0.67 Score=40.67 Aligned_cols=28 Identities=18% Similarity=0.401 Sum_probs=25.0
Q ss_pred HHHHHHHHhCCCCCcccccCCCCCCCCC
Q psy7970 14 ASIACFLAGNGADLSIKNKKGQTPLDLC 41 (290)
Q Consensus 14 ~aiacfL~~~Gadl~~~n~~g~tpldl~ 41 (290)
..|+-+|+.+|||++.+|..|+|||+++
T Consensus 103 ~eiv~~Ll~~gadin~~d~~G~TpLh~a 130 (209)
T PHA02859 103 PEILKILIDSGSSITEEDEDGKNLLHMY 130 (209)
T ss_pred HHHHHHHHHCCCCCCCcCCCCCCHHHHH
Confidence 4677889999999999999999999986
No 144
>PHA02946 ankyin-like protein; Provisional
Probab=80.50 E-value=0.84 Score=44.94 Aligned_cols=40 Identities=15% Similarity=0.164 Sum_probs=25.3
Q ss_pred HHHHHHhCCCCCcccccCCCCCCCCCCCchhHHHHHhhhh
Q psy7970 16 IACFLAGNGADLSIKNKKGQTPLDLCPDPNLCKALTKCYK 55 (290)
Q Consensus 16 iacfL~~~Gadl~~~n~~g~tpldl~~d~~~~~~l~~~~~ 55 (290)
++-+|+++|||++.+|..|.|||.++......+.+.-+.+
T Consensus 54 iv~~Ll~~Gadvn~~d~~G~TpLh~Aa~~g~~eiv~lLL~ 93 (446)
T PHA02946 54 FVEELLHRGYSPNETDDDGNYPLHIASKINNNRIVAMLLT 93 (446)
T ss_pred HHHHHHHCcCCCCccCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence 5666777777777777777777777755544444444443
No 145
>PF04641 Rtf2: Rtf2 RING-finger
Probab=80.37 E-value=1.6 Score=39.87 Aligned_cols=31 Identities=26% Similarity=0.517 Sum_probs=26.5
Q ss_pred ceEEeCCCCeecchhhHhcCC---CCCCCCccccc
Q psy7970 137 SVLFKPCYHMVACESCASLMK---KCVQCRTQIDH 168 (290)
Q Consensus 137 ~~~~~PCgH~~~C~~Ca~~~~---~Cp~Cr~~i~~ 168 (290)
-+.+.||||+ +++.+...++ .||.|..+...
T Consensus 129 fv~l~~cG~V-~s~~alke~k~~~~Cp~c~~~f~~ 162 (260)
T PF04641_consen 129 FVYLRPCGCV-FSEKALKELKKSKKCPVCGKPFTE 162 (260)
T ss_pred EEEEcCCCCE-eeHHHHHhhcccccccccCCcccc
Confidence 4677799999 8899998877 89999999774
No 146
>PHA02798 ankyrin-like protein; Provisional
Probab=79.78 E-value=0.92 Score=44.86 Aligned_cols=29 Identities=41% Similarity=0.518 Sum_probs=25.2
Q ss_pred HHHHHHHHhCCCCCcccccCCCCCCCCCC
Q psy7970 14 ASIACFLAGNGADLSIKNKKGQTPLDLCP 42 (290)
Q Consensus 14 ~aiacfL~~~Gadl~~~n~~g~tpldl~~ 42 (290)
..++-+|+++|||++.+|..|+|||.++.
T Consensus 89 ~~iv~~Ll~~GadiN~~d~~G~TpLh~a~ 117 (489)
T PHA02798 89 LDIVKILIENGADINKKNSDGETPLYCLL 117 (489)
T ss_pred HHHHHHHHHCCCCCCCCCCCcCcHHHHHH
Confidence 57888999999999999999999998774
No 147
>KOG0512|consensus
Probab=79.48 E-value=1.3 Score=38.48 Aligned_cols=41 Identities=27% Similarity=0.252 Sum_probs=31.8
Q ss_pred HHHHHHHHhCCCCCcccccCCCCCCCCCCCch-hHHHHHhhh
Q psy7970 14 ASIACFLAGNGADLSIKNKKGQTPLDLCPDPN-LCKALTKCY 54 (290)
Q Consensus 14 ~aiacfL~~~Gadl~~~n~~g~tpldl~~d~~-~~~~l~~~~ 54 (290)
+-+|=||++.|||+++.-.-.+|||++....+ .+.++.-++
T Consensus 143 ~~va~~LLqhgaDVnA~t~g~ltpLhlaa~~rn~r~t~~~Ll 184 (228)
T KOG0512|consen 143 FEVAGRLLQHGADVNAQTKGLLTPLHLAAGNRNSRDTLELLL 184 (228)
T ss_pred hhHHHHHHhccCcccccccccchhhHHhhcccchHHHHHHHh
Confidence 46888999999999999999999999996554 444444444
No 148
>KOG0508|consensus
Probab=79.42 E-value=1.7 Score=43.12 Aligned_cols=43 Identities=23% Similarity=0.256 Sum_probs=37.8
Q ss_pred HHHHHHHhCCCCCcccccCCCCCCCCCCCchhHHHHHhhhhcc
Q psy7970 15 SIACFLAGNGADLSIKNKKGQTPLDLCPDPNLCKALTKCYKDK 57 (290)
Q Consensus 15 aiacfL~~~Gadl~~~n~~g~tpldl~~d~~~~~~l~~~~~~~ 57 (290)
-|.-||+.+|||+++.|+.|+|-|-++.......+.+.+++..
T Consensus 131 eivKyLvE~gad~~IanrhGhTcLmIa~ykGh~~I~qyLle~g 173 (615)
T KOG0508|consen 131 EIVKYLVEHGADPEIANRHGHTCLMIACYKGHVDIAQYLLEQG 173 (615)
T ss_pred HHHHHHHHcCCCCcccccCCCeeEEeeeccCchHHHHHHHHhC
Confidence 5677899999999999999999999999988888888777554
No 149
>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
Probab=79.13 E-value=1 Score=46.70 Aligned_cols=43 Identities=23% Similarity=0.400 Sum_probs=33.2
Q ss_pred HHHHHHHHhCCCCCcccccCCCCCCCCCCCchhHHHHHhhhhc
Q psy7970 14 ASIACFLAGNGADLSIKNKKGQTPLDLCPDPNLCKALTKCYKD 56 (290)
Q Consensus 14 ~aiacfL~~~Gadl~~~n~~g~tpldl~~d~~~~~~l~~~~~~ 56 (290)
..++-||+..|||++++|..|.|||+++...+..+.+.-+.+.
T Consensus 128 ~eiv~~LL~~Gadvn~~d~~G~TpLh~A~~~g~~~iv~~Ll~~ 170 (664)
T PTZ00322 128 VQVVRVLLEFGADPTLLDKDGKTPLELAEENGFREVVQLLSRH 170 (664)
T ss_pred HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHHHHHHHHhC
Confidence 3678899999999999999999999998666655555555433
No 150
>PHA02946 ankyin-like protein; Provisional
Probab=79.13 E-value=0.87 Score=44.82 Aligned_cols=30 Identities=23% Similarity=0.342 Sum_probs=27.0
Q ss_pred HHHHHHHhCCCCCcccccCCCCCCCCCCCc
Q psy7970 15 SIACFLAGNGADLSIKNKKGQTPLDLCPDP 44 (290)
Q Consensus 15 aiacfL~~~Gadl~~~n~~g~tpldl~~d~ 44 (290)
.++-+|++.|||++.+|..|.|||+++...
T Consensus 189 ~~v~~Ll~~Gadin~~d~~G~TpLH~Aa~~ 218 (446)
T PHA02946 189 STISWMMKLGISPSKPDHDGNTPLHIVCSK 218 (446)
T ss_pred HHHHHHHHcCCCCcccCCCCCCHHHHHHHc
Confidence 578899999999999999999999998643
No 151
>PHA02874 ankyrin repeat protein; Provisional
Probab=79.11 E-value=0.8 Score=44.45 Aligned_cols=29 Identities=38% Similarity=0.511 Sum_probs=26.3
Q ss_pred HHHHHHHHhCCCCCcccccCCCCCCCCCC
Q psy7970 14 ASIACFLAGNGADLSIKNKKGQTPLDLCP 42 (290)
Q Consensus 14 ~aiacfL~~~Gadl~~~n~~g~tpldl~~ 42 (290)
..++-+|+.+|||++++|.+|.|||+++.
T Consensus 268 ~~iv~~Ll~~gad~n~~d~~g~TpL~~A~ 296 (434)
T PHA02874 268 IDIIDILLYHKADISIKDNKGENPIDTAF 296 (434)
T ss_pred HHHHHHHHHCcCCCCCCCCCCCCHHHHHH
Confidence 36788999999999999999999999984
No 152
>KOG0195|consensus
Probab=79.04 E-value=1.7 Score=40.51 Aligned_cols=46 Identities=24% Similarity=0.289 Sum_probs=42.4
Q ss_pred HHHHHHHHHhCCCCCcccccCCCCCCCCCCCchhHHHHHhhhhccc
Q psy7970 13 SASIACFLAGNGADLSIKNKKGQTPLDLCPDPNLCKALTKCYKDKE 58 (290)
Q Consensus 13 ~~aiacfL~~~Gadl~~~n~~g~tpldl~~d~~~~~~l~~~~~~~~ 58 (290)
-+||+=.|++.||.+|..|.-.-|||+|++....++.++++++++.
T Consensus 46 h~aivemll~rgarvn~tnmgddtplhlaaahghrdivqkll~~ka 91 (448)
T KOG0195|consen 46 HVAIVEMLLSRGARVNSTNMGDDTPLHLAAAHGHRDIVQKLLSRKA 91 (448)
T ss_pred cHHHHHHHHhcccccccccCCCCcchhhhhhcccHHHHHHHHHHhc
Confidence 3589999999999999999999999999999999999999998775
No 153
>KOG4412|consensus
Probab=79.03 E-value=2.1 Score=37.49 Aligned_cols=36 Identities=22% Similarity=0.198 Sum_probs=21.0
Q ss_pred HHHhC-CCCCcccccCCCCCCCCCCCchhHHHHHhhh
Q psy7970 19 FLAGN-GADLSIKNKKGQTPLDLCPDPNLCKALTKCY 54 (290)
Q Consensus 19 fL~~~-Gadl~~~n~~g~tpldl~~d~~~~~~l~~~~ 54 (290)
-|... |||+|+.|+.|+|+|+++..-+-.++.+-+.
T Consensus 90 ~Ll~r~~advna~tn~G~T~LHyAagK~r~eIaqlLl 126 (226)
T KOG4412|consen 90 ELLNRSGADVNATTNGGQTCLHYAAGKGRLEIAQLLL 126 (226)
T ss_pred HHhcCCCCCcceecCCCcceehhhhcCChhhHHHHHH
Confidence 34444 6666666666666666666555555444444
No 154
>KOG0509|consensus
Probab=79.02 E-value=1.6 Score=44.27 Aligned_cols=46 Identities=20% Similarity=0.286 Sum_probs=38.3
Q ss_pred HHHHHHHHHhCCCCCcccc-cCCCCCCCCCCCchhHHHHHhhhhccc
Q psy7970 13 SASIACFLAGNGADLSIKN-KKGQTPLDLCPDPNLCKALTKCYKDKE 58 (290)
Q Consensus 13 ~~aiacfL~~~Gadl~~~n-~~g~tpldl~~d~~~~~~l~~~~~~~~ 58 (290)
-.+||.||++.|||+|... .-|.|||+++.--.....++-+.++.+
T Consensus 90 rl~v~r~li~~gadvn~~gG~l~stPLHWAar~G~~~vv~lLlqhGA 136 (600)
T KOG0509|consen 90 RLDVARYLISHGADVNAIGGVLGSTPLHWAARNGHISVVDLLLQHGA 136 (600)
T ss_pred cHHHHHHHHHcCCCccccCCCCCCCcchHHHHcCcHHHHHHHHHcCC
Confidence 3489999999999999888 888999999987777777777776654
No 155
>PHA02876 ankyrin repeat protein; Provisional
Probab=78.69 E-value=1.2 Score=45.97 Aligned_cols=45 Identities=22% Similarity=0.212 Sum_probs=35.6
Q ss_pred HHHHHHHHHhCCCCCcccccCCCCCCCCCCCchhHHHHHhhhhcc
Q psy7970 13 SASIACFLAGNGADLSIKNKKGQTPLDLCPDPNLCKALTKCYKDK 57 (290)
Q Consensus 13 ~~aiacfL~~~Gadl~~~n~~g~tpldl~~d~~~~~~l~~~~~~~ 57 (290)
...|+-+|++.|||++.+|..|.|||.++......+.+.-+.+..
T Consensus 157 ~~~i~k~Ll~~Gadvn~~d~~G~TpLh~Aa~~G~~~iv~~LL~~G 201 (682)
T PHA02876 157 ELLIAEMLLEGGADVNAKDIYCITPIHYAAERGNAKMVNLLLSYG 201 (682)
T ss_pred cHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCC
Confidence 347889999999999999999999999996666666665555543
No 156
>PHA02884 ankyrin repeat protein; Provisional
Probab=78.42 E-value=1.2 Score=41.66 Aligned_cols=43 Identities=19% Similarity=0.036 Sum_probs=29.9
Q ss_pred HHHHHHHHhCCCCCcccc----cCCCCCCCCCCCchhHHHHHhhhhc
Q psy7970 14 ASIACFLAGNGADLSIKN----KKGQTPLDLCPDPNLCKALTKCYKD 56 (290)
Q Consensus 14 ~aiacfL~~~Gadl~~~n----~~g~tpldl~~d~~~~~~l~~~~~~ 56 (290)
..++-+|+++|||++.++ ..|.|||.++......+.+.-+.+.
T Consensus 46 ~eivk~LL~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~ 92 (300)
T PHA02884 46 TDIIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRY 92 (300)
T ss_pred HHHHHHHHHCCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence 467778888888888764 5788888888655555555555543
No 157
>PHA02716 CPXV016; CPX019; EVM010; Provisional
Probab=78.39 E-value=1.1 Score=47.31 Aligned_cols=27 Identities=30% Similarity=0.381 Sum_probs=24.7
Q ss_pred HHHHHhCCCCCcccccCCCCCCCCCCC
Q psy7970 17 ACFLAGNGADLSIKNKKGQTPLDLCPD 43 (290)
Q Consensus 17 acfL~~~Gadl~~~n~~g~tpldl~~d 43 (290)
+-+|++.|||++++|..|+|||+++.-
T Consensus 518 ~k~LL~~GADIN~~d~~G~TPLh~A~~ 544 (764)
T PHA02716 518 FVYLLSIQYNINIPTKNGVTPLMLTMR 544 (764)
T ss_pred HHHHHhCCCCCcccCCCCCCHHHHHHH
Confidence 478999999999999999999999964
No 158
>PHA02878 ankyrin repeat protein; Provisional
Probab=78.29 E-value=1.1 Score=44.17 Aligned_cols=32 Identities=16% Similarity=0.244 Sum_probs=28.1
Q ss_pred HHHHHHHHhCCCCCcccccCCCCCCCCCCCch
Q psy7970 14 ASIACFLAGNGADLSIKNKKGQTPLDLCPDPN 45 (290)
Q Consensus 14 ~aiacfL~~~Gadl~~~n~~g~tpldl~~d~~ 45 (290)
..++-+|++.|||++.+|..|.|||+++...+
T Consensus 50 ~e~vk~Ll~~gadvn~~d~~g~TpLh~A~~~g 81 (477)
T PHA02878 50 LDVVKSLLTRGHNVNQPDHRDLTPLHIICKEP 81 (477)
T ss_pred HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCc
Confidence 47789999999999999999999999985443
No 159
>PHA03095 ankyrin-like protein; Provisional
Probab=78.21 E-value=1.3 Score=43.00 Aligned_cols=32 Identities=28% Similarity=0.293 Sum_probs=26.6
Q ss_pred HHHHHHHHHhCCCCCcccccCCCCCCCCCCCc
Q psy7970 13 SASIACFLAGNGADLSIKNKKGQTPLDLCPDP 44 (290)
Q Consensus 13 ~~aiacfL~~~Gadl~~~n~~g~tpldl~~d~ 44 (290)
...+.-+|++.|||++.+|..|.|||+++...
T Consensus 201 ~~~i~~~Ll~~g~~~~~~d~~g~tpLh~Aa~~ 232 (471)
T PHA03095 201 RARIVRELIRAGCDPAATDMLGNTPLHSMATG 232 (471)
T ss_pred cHHHHHHHHHcCCCCcccCCCCCCHHHHHHhc
Confidence 45788889999999999999999999888543
No 160
>KOG3039|consensus
Probab=78.12 E-value=2.5 Score=38.39 Aligned_cols=44 Identities=11% Similarity=0.166 Sum_probs=35.2
Q ss_pred ccccccccccCC----ceEEeCCCCeecchhhHhcC----CCCCCCCcccccc
Q psy7970 125 IEECMVCSLKKA----SVLFKPCYHMVACESCASLM----KKCVQCRTQIDHM 169 (290)
Q Consensus 125 i~~C~~C~~~~~----~~~~~PCgH~~~C~~Ca~~~----~~Cp~Cr~~i~~~ 169 (290)
-|.|.+|.+... -+++.||||+ +|.+|+.++ ..||+|..+...+
T Consensus 221 ryiCpvtrd~LtNt~~ca~Lr~sg~V-v~~ecvEklir~D~v~pv~d~plkdr 272 (303)
T KOG3039|consen 221 RYICPVTRDTLTNTTPCAVLRPSGHV-VTKECVEKLIRKDMVDPVTDKPLKDR 272 (303)
T ss_pred ceecccchhhhcCccceEEeccCCcE-eeHHHHHHhccccccccCCCCcCccc
Confidence 378999977544 4588899999 999999765 5899999887654
No 161
>PHA02795 ankyrin-like protein; Provisional
Probab=78.04 E-value=1 Score=44.46 Aligned_cols=31 Identities=29% Similarity=0.426 Sum_probs=27.8
Q ss_pred HHHHHHHHhCCCCCcccccCCCCCCCCCCCc
Q psy7970 14 ASIACFLAGNGADLSIKNKKGQTPLDLCPDP 44 (290)
Q Consensus 14 ~aiacfL~~~Gadl~~~n~~g~tpldl~~d~ 44 (290)
..++-+|++.|||++.+|..|.|||+++...
T Consensus 234 ~eiVelLL~~GAdIN~~d~~G~TpLh~Aa~~ 264 (437)
T PHA02795 234 IDLVSWLLENGANVNAVMSNGYTCLDVAVDR 264 (437)
T ss_pred HHHHHHHHHCCCCCCCcCCCCCCHHHHHHHc
Confidence 3788999999999999999999999999543
No 162
>PHA02791 ankyrin-like protein; Provisional
Probab=77.56 E-value=1.5 Score=40.72 Aligned_cols=41 Identities=17% Similarity=0.157 Sum_probs=29.4
Q ss_pred HHHHHHHhCCCCCcccccCCCCC-CCCCCCchhHHHHHhhhh
Q psy7970 15 SIACFLAGNGADLSIKNKKGQTP-LDLCPDPNLCKALTKCYK 55 (290)
Q Consensus 15 aiacfL~~~Gadl~~~n~~g~tp-ldl~~d~~~~~~l~~~~~ 55 (290)
.++-+|++.|||++.+|..|+|| |.++...+..+.+.-+.+
T Consensus 174 eiv~lLL~~gAd~n~~d~~g~t~~L~~Aa~~~~~e~v~lLl~ 215 (284)
T PHA02791 174 DMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDLEMLQALFK 215 (284)
T ss_pred HHHHHHHHCCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHH
Confidence 56778888888888888888876 777766666666555553
No 163
>PHA02884 ankyrin repeat protein; Provisional
Probab=77.36 E-value=0.99 Score=42.30 Aligned_cols=26 Identities=31% Similarity=0.479 Sum_probs=12.7
Q ss_pred HHHHHHhCCCCCcccccCCCCCCCCC
Q psy7970 16 IACFLAGNGADLSIKNKKGQTPLDLC 41 (290)
Q Consensus 16 iacfL~~~Gadl~~~n~~g~tpldl~ 41 (290)
++.+|+..|||++.+|..|.|||+++
T Consensus 119 ivklLL~~GAdin~kd~~G~TpL~~A 144 (300)
T PHA02884 119 CLEILLSYGADINIQTNDMVTPIELA 144 (300)
T ss_pred HHHHHHHCCCCCCCCCCCCCCHHHHH
Confidence 34444555555555555555554444
No 164
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=77.32 E-value=1.6 Score=46.36 Aligned_cols=44 Identities=11% Similarity=0.141 Sum_probs=35.6
Q ss_pred HHHHHHHHhCCCCCcccccCCCCCCCCCCCchhHHHHHhhhhcc
Q psy7970 14 ASIACFLAGNGADLSIKNKKGQTPLDLCPDPNLCKALTKCYKDK 57 (290)
Q Consensus 14 ~aiacfL~~~Gadl~~~n~~g~tpldl~~d~~~~~~l~~~~~~~ 57 (290)
..++-+|+++|||++.+|.+|.|||+++......+.+.-+.+..
T Consensus 635 ~~~v~~Ll~~Gadin~~d~~G~TpLh~A~~~g~~~iv~~Ll~~G 678 (823)
T PLN03192 635 LTAMKELLKQGLNVDSEDHQGATALQVAMAEDHVDMVRLLIMNG 678 (823)
T ss_pred HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHHHHHHHHHcC
Confidence 36788999999999999999999999997666666666555443
No 165
>PHA02875 ankyrin repeat protein; Provisional
Probab=77.27 E-value=1.4 Score=42.29 Aligned_cols=43 Identities=26% Similarity=0.241 Sum_probs=31.4
Q ss_pred HHHHHHHHhCCCCCcccccCCCCCCCCCCCchhHHHHHhhhhc
Q psy7970 14 ASIACFLAGNGADLSIKNKKGQTPLDLCPDPNLCKALTKCYKD 56 (290)
Q Consensus 14 ~aiacfL~~~Gadl~~~n~~g~tpldl~~d~~~~~~l~~~~~~ 56 (290)
..++-+|++.|||++..|..|.|||+++.-..-.+.+.-+.+.
T Consensus 115 ~~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~ 157 (413)
T PHA02875 115 LDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDH 157 (413)
T ss_pred HHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence 3677888899999998888999999888555544555544443
No 166
>PHA02859 ankyrin repeat protein; Provisional
Probab=76.90 E-value=1.4 Score=38.64 Aligned_cols=27 Identities=15% Similarity=0.135 Sum_probs=23.7
Q ss_pred HHHHHHHHhCCCCCcccccCCCCCCCC
Q psy7970 14 ASIACFLAGNGADLSIKNKKGQTPLDL 40 (290)
Q Consensus 14 ~aiacfL~~~Gadl~~~n~~g~tpldl 40 (290)
..++-+|+..|||++.+|..|.|||+.
T Consensus 138 ~~iv~~Li~~gadin~~d~~g~t~Lh~ 164 (209)
T PHA02859 138 INVIKLLIDSGVSFLNKDFDNNNILYS 164 (209)
T ss_pred HHHHHHHHHcCCCcccccCCCCcHHHH
Confidence 468889999999999999999999984
No 167
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=76.74 E-value=0.84 Score=40.12 Aligned_cols=44 Identities=23% Similarity=0.378 Sum_probs=36.0
Q ss_pred ccccccccccCCceEEeCCCCeecchhhHhc----CCCCCCCCcccccc
Q psy7970 125 IEECMVCSLKKASVLFKPCYHMVACESCASL----MKKCVQCRTQIDHM 169 (290)
Q Consensus 125 i~~C~~C~~~~~~~~~~PCgH~~~C~~Ca~~----~~~Cp~Cr~~i~~~ 169 (290)
++.|.+|.......+..-|||. +|..|+.+ -..|-+|....-.+
T Consensus 196 PF~C~iCKkdy~spvvt~CGH~-FC~~Cai~~y~kg~~C~~Cgk~t~G~ 243 (259)
T COG5152 196 PFLCGICKKDYESPVVTECGHS-FCSLCAIRKYQKGDECGVCGKATYGR 243 (259)
T ss_pred ceeehhchhhccchhhhhcchh-HHHHHHHHHhccCCcceecchhhccc
Confidence 3699999998888899999999 99999964 35888888765443
No 168
>PHA02792 ankyrin-like protein; Provisional
Probab=76.50 E-value=1.6 Score=44.95 Aligned_cols=41 Identities=17% Similarity=0.160 Sum_probs=29.8
Q ss_pred HHHHHHHhCCCCCcccccCCCCCCCCCCCchhHHHHHhhhh
Q psy7970 15 SIACFLAGNGADLSIKNKKGQTPLDLCPDPNLCKALTKCYK 55 (290)
Q Consensus 15 aiacfL~~~Gadl~~~n~~g~tpldl~~d~~~~~~l~~~~~ 55 (290)
.++-||+++|||++.+|..|.|||+.+......+.+.-+.+
T Consensus 391 ~IlklLIs~GADIN~kD~~G~TPLh~Aa~~~n~eivelLLs 431 (631)
T PHA02792 391 SILKLCKPYIDDINKIDKHGRSILYYCIESHSVSLVEWLID 431 (631)
T ss_pred HHHHHHHhcCCccccccccCcchHHHHHHcCCHHHHHHHHH
Confidence 36778888888888888888888888865555555444443
No 169
>KOG3842|consensus
Probab=76.26 E-value=1.9 Score=40.50 Aligned_cols=79 Identities=24% Similarity=0.462 Sum_probs=48.0
Q ss_pred cCcceEeecCCCcccccchh------hhhccCCCCCCcchhhccccccccc-----cc-cCCceEEeCCCCeecchhhHh
Q psy7970 87 LKRDILFQPCGHVACCSVCA------PRVKKCLICREPVEKRIKIEECMVC-----SL-KKASVLFKPCYHMVACESCAS 154 (290)
Q Consensus 87 ~~~~~~~~PCgH~~~C~~Ca------~~~~~Cp~Cr~~i~~~~~i~~C~~C-----~~-~~~~~~~~PCgH~~~C~~Ca~ 154 (290)
..---+.+-|||+---.+=. .+-..||+||..=. .+ .++..| .+ .+.+-.|-||||++. +.=+.
T Consensus 313 ~~QP~vYl~CGHV~G~H~WG~~e~~g~~~r~CPmC~~~gp-~V--~L~lG~E~~f~vD~G~pthaF~PCGHv~s-ekt~~ 388 (429)
T KOG3842|consen 313 EKQPWVYLNCGHVHGYHNWGVRENTGQRERECPMCRVVGP-YV--PLWLGCEAGFYVDAGPPTHAFNPCGHVCS-EKTVK 388 (429)
T ss_pred ccCCeEEEeccccccccccccccccCcccCcCCeeeeecc-ee--eeeccccceeEecCCCcccccCCcccccc-hhhhh
Confidence 34456788999997433222 22369999997544 22 233333 33 356678999999943 33331
Q ss_pred ---cC----------CCCCCCCcccccc
Q psy7970 155 ---LM----------KKCVQCRTQIDHM 169 (290)
Q Consensus 155 ---~~----------~~Cp~Cr~~i~~~ 169 (290)
++ --||+|..+....
T Consensus 389 YWs~iplPhGT~~f~a~CPFC~~~L~ge 416 (429)
T KOG3842|consen 389 YWSQIPLPHGTHAFHAACPFCATQLAGE 416 (429)
T ss_pred HhhcCcCCCccccccccCcchhhhhccC
Confidence 11 3799999887654
No 170
>KOG1734|consensus
Probab=76.15 E-value=0.92 Score=41.68 Aligned_cols=44 Identities=23% Similarity=0.689 Sum_probs=33.3
Q ss_pred CCCccccccccccccc-----------cccCCccchHHHhcC------CCCCCCccccccc
Q psy7970 243 EQTMCPVCLDRLKNMI-----------FLCGHGTCQMCGDRM------SECPICRKAVEKR 286 (290)
Q Consensus 243 e~~~C~IC~~~~~~~v-----------~~CGH~fC~~C~~~~------~~CP~CR~~i~~~ 286 (290)
++..|.||-..+...+ +.|+|.|=..||+.| .+||-|++.++..
T Consensus 223 ~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVdl~ 283 (328)
T KOG1734|consen 223 SDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLK 283 (328)
T ss_pred CcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhhHh
Confidence 4567888877655443 239999999999988 3799999887543
No 171
>PHA02874 ankyrin repeat protein; Provisional
Probab=74.36 E-value=1.6 Score=42.33 Aligned_cols=41 Identities=20% Similarity=0.322 Sum_probs=25.5
Q ss_pred HHHHHHHhCCCCCcccccCCCCCCCCCCCchhHHHHHhhhh
Q psy7970 15 SIACFLAGNGADLSIKNKKGQTPLDLCPDPNLCKALTKCYK 55 (290)
Q Consensus 15 aiacfL~~~Gadl~~~n~~g~tpldl~~d~~~~~~l~~~~~ 55 (290)
.++-+|++.|||++.+|..|.|||+++...+..+.+.-+.+
T Consensus 138 ~~v~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~ 178 (434)
T PHA02874 138 ESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLE 178 (434)
T ss_pred HHHHHHHhCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHH
Confidence 45566777777777777777777777655544444444443
No 172
>KOG2113|consensus
Probab=74.15 E-value=2.8 Score=39.38 Aligned_cols=52 Identities=6% Similarity=-0.068 Sum_probs=42.5
Q ss_pred CCCCCCccccccccCcceEeecCCCcccccchhhhh--ccCCCCCCcchhhccc
Q psy7970 74 DMVTLDECRICSDLKRDILFQPCGHVACCSVCAPRV--KKCLICREPVEKRIKI 125 (290)
Q Consensus 74 ~~~~~~~C~iC~~~~~~~~~~PCgH~~~C~~Ca~~~--~~Cp~Cr~~i~~~~~i 125 (290)
+.....+|.+|-..-..+++.||||...|.+||.-- ..||.|...+...++|
T Consensus 339 ~~~s~~~~~~~~~~~~st~~~~~~~n~~~~~~a~~s~~~~~~~c~~~~~~~~~i 392 (394)
T KOG2113|consen 339 GLMSSLKGTSAGFGLLSTIWSGGNMNLSPGSLASASASPTSSTCDHNDHTLVPI 392 (394)
T ss_pred cchhhcccccccCceeeeEeecCCcccChhhhhhcccCCccccccccceeeeec
Confidence 445557999999999999999999999999999843 5889888776555443
No 173
>KOG3800|consensus
Probab=73.89 E-value=1.9 Score=40.02 Aligned_cols=28 Identities=29% Similarity=0.801 Sum_probs=22.6
Q ss_pred EEeCCCCeecchhhHhcC-----CCCCCCCcccc
Q psy7970 139 LFKPCYHMVACESCASLM-----KKCVQCRTQID 167 (290)
Q Consensus 139 ~~~PCgH~~~C~~Ca~~~-----~~Cp~Cr~~i~ 167 (290)
.+-||||. .|++|..++ -.||.|.+..-
T Consensus 19 ~in~C~H~-lCEsCvd~iF~~g~~~CpeC~~iLR 51 (300)
T KOG3800|consen 19 MINECGHR-LCESCVDRIFSLGPAQCPECMVILR 51 (300)
T ss_pred eeccccch-HHHHHHHHHHhcCCCCCCcccchhh
Confidence 34499999 999999876 49999996643
No 174
>PHA02716 CPXV016; CPX019; EVM010; Provisional
Probab=73.76 E-value=2 Score=45.36 Aligned_cols=29 Identities=28% Similarity=0.392 Sum_probs=25.1
Q ss_pred HHHHHHHhCCCCCcccccCCCCCCCCCCC
Q psy7970 15 SIACFLAGNGADLSIKNKKGQTPLDLCPD 43 (290)
Q Consensus 15 aiacfL~~~Gadl~~~n~~g~tpldl~~d 43 (290)
.++-||+++|||++.+|..|.|||.++..
T Consensus 193 eIVklLLe~GADVN~kD~~G~TPLH~Aa~ 221 (764)
T PHA02716 193 DILEWLCNNGVNVNLQNNHLITPLHTYLI 221 (764)
T ss_pred HHHHHHHHcCCCCCCCCCCCCCHHHHHHH
Confidence 57889999999999999999999998843
No 175
>PHA02875 ankyrin repeat protein; Provisional
Probab=73.74 E-value=1.8 Score=41.45 Aligned_cols=43 Identities=19% Similarity=0.058 Sum_probs=34.4
Q ss_pred HHHHHHHHhCCCCCcccccCCCCCCCCCCCchhHHHHHhhhhc
Q psy7970 14 ASIACFLAGNGADLSIKNKKGQTPLDLCPDPNLCKALTKCYKD 56 (290)
Q Consensus 14 ~aiacfL~~~Gadl~~~n~~g~tpldl~~d~~~~~~l~~~~~~ 56 (290)
..++-+|+++|+|++.+|..|.|||.++......+.+.-+.+.
T Consensus 148 ~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~ 190 (413)
T PHA02875 148 IKGIELLIDHKACLDIEDCCGCTPLIIAMAKGDIAICKMLLDS 190 (413)
T ss_pred HHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhC
Confidence 3678899999999999999999999999655555555555543
No 176
>PF13606 Ank_3: Ankyrin repeat
Probab=73.28 E-value=3.3 Score=24.79 Aligned_cols=17 Identities=29% Similarity=0.501 Sum_probs=14.4
Q ss_pred HHHHHHHHHhCCCCCcc
Q psy7970 13 SASIACFLAGNGADLSI 29 (290)
Q Consensus 13 ~~aiacfL~~~Gadl~~ 29 (290)
...++-||+++|||+|.
T Consensus 14 ~~e~v~~Ll~~gadvn~ 30 (30)
T PF13606_consen 14 NIEIVKYLLEHGADVNA 30 (30)
T ss_pred CHHHHHHHHHcCCCCCC
Confidence 45789999999999963
No 177
>KOG4362|consensus
Probab=73.24 E-value=1.8 Score=44.68 Aligned_cols=56 Identities=27% Similarity=0.773 Sum_probs=44.3
Q ss_pred HHHHHHHHHhccCCCccccccccccccccc-cCCccchHHHhcCC-------CCCCCccccccc
Q psy7970 231 IQKLQQQLQDIKEQTMCPVCLDRLKNMIFL-CGHGTCQMCGDRMS-------ECPICRKAVEKR 286 (290)
Q Consensus 231 ~~~l~~~~~~l~e~~~C~IC~~~~~~~v~~-CGH~fC~~C~~~~~-------~CP~CR~~i~~~ 286 (290)
+.+..+-...+...+.|+||..-.+.|+.. |-|.||..|+...+ .||+|+..++++
T Consensus 8 ~~~~~~vi~~~~k~lEc~ic~~~~~~p~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~eK~ 71 (684)
T KOG4362|consen 8 VREVAQVINAMQKILECPICLEHVKEPSLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDIEKR 71 (684)
T ss_pred HHHHHhHHHHHhhhccCCceeEEeeccchhhhhHHHHhhhhhceeeccCccccchhhhhhhhhh
Confidence 444555566677789999999999999775 99999999999652 699998766543
No 178
>PHA02917 ankyrin-like protein; Provisional
Probab=73.24 E-value=2 Score=44.64 Aligned_cols=41 Identities=17% Similarity=0.096 Sum_probs=32.5
Q ss_pred HHHHHHHhCCCCCcccccCCCCCCCCCCCchhHHHHHhhhh
Q psy7970 15 SIACFLAGNGADLSIKNKKGQTPLDLCPDPNLCKALTKCYK 55 (290)
Q Consensus 15 aiacfL~~~Gadl~~~n~~g~tpldl~~d~~~~~~l~~~~~ 55 (290)
.++=||+++|||++.+|..|+|||.++..-+-.+.+.-+.+
T Consensus 433 ~~v~~Ll~~GAdIN~kd~~G~TpLh~Aa~~~~~~~v~~Ll~ 473 (661)
T PHA02917 433 STINICLPYLKDINMIDKRGETLLHKAVRYNKQSLVSLLLE 473 (661)
T ss_pred HHHHHHHHCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHH
Confidence 46689999999999999999999999965555555544543
No 179
>PHA02917 ankyrin-like protein; Provisional
Probab=72.43 E-value=2.3 Score=44.18 Aligned_cols=27 Identities=22% Similarity=0.352 Sum_probs=25.0
Q ss_pred HHHHHHHHhCCCCCcccccCCCCCCCC
Q psy7970 14 ASIACFLAGNGADLSIKNKKGQTPLDL 40 (290)
Q Consensus 14 ~aiacfL~~~Gadl~~~n~~g~tpldl 40 (290)
..++-||+++|||++++|.+|.|||.+
T Consensus 116 ~e~vk~Ll~~Gadin~~d~~g~T~L~~ 142 (661)
T PHA02917 116 VDLIKVLVEHGFDLSVKCENHRSVIEN 142 (661)
T ss_pred HHHHHHHHHcCCCCCccCCCCccHHHH
Confidence 468999999999999999999999985
No 180
>KOG2505|consensus
Probab=72.34 E-value=4 Score=40.70 Aligned_cols=39 Identities=21% Similarity=0.338 Sum_probs=34.0
Q ss_pred HHHHHHhCCCCCcccccCCCCCCCCCCCchhHHHHHhhh
Q psy7970 16 IACFLAGNGADLSIKNKKGQTPLDLCPDPNLCKALTKCY 54 (290)
Q Consensus 16 iacfL~~~Gadl~~~n~~g~tpldl~~d~~~~~~l~~~~ 54 (290)
.+-+|+.+|+|+.++|..|+||.+|-.+.-+..+....+
T Consensus 445 ~v~~~Leeg~Dp~~kd~~Grtpy~ls~nkdVk~~F~a~~ 483 (591)
T KOG2505|consen 445 CVKYFLEEGCDPSTKDGAGRTPYSLSANKDVKSIFIARR 483 (591)
T ss_pred HHHHHHHhcCCchhcccCCCCcccccccHHHHHHHHHHH
Confidence 466788999999999999999999999988888877444
No 181
>PHA03100 ankyrin repeat protein; Provisional
Probab=72.22 E-value=3.3 Score=40.33 Aligned_cols=42 Identities=21% Similarity=0.282 Sum_probs=28.1
Q ss_pred HHHHHHHhCCCCCcccccCCCCCCCCCC--CchhHHHHHhhhhc
Q psy7970 15 SIACFLAGNGADLSIKNKKGQTPLDLCP--DPNLCKALTKCYKD 56 (290)
Q Consensus 15 aiacfL~~~Gadl~~~n~~g~tpldl~~--d~~~~~~l~~~~~~ 56 (290)
.++-+|++.|||++..|..|.|||.++. .....+.+..+.+.
T Consensus 87 ~iv~~Ll~~ga~i~~~d~~g~tpL~~A~~~~~~~~~iv~~Ll~~ 130 (480)
T PHA03100 87 EIVKLLLEYGANVNAPDNNGITPLLYAISKKSNSYSIVEYLLDN 130 (480)
T ss_pred HHHHHHHHCCCCCCCCCCCCCchhhHHHhcccChHHHHHHHHHc
Confidence 5666777777777777777777777776 55555555555543
No 182
>KOG4214|consensus
Probab=72.13 E-value=2.8 Score=32.92 Aligned_cols=45 Identities=27% Similarity=0.232 Sum_probs=33.7
Q ss_pred hHHHHHHHHHhCCCCCcccccCCCCCCCCCCCchhHHHHHhhhhc
Q psy7970 12 SSASIACFLAGNGADLSIKNKKGQTPLDLCPDPNLCKALTKCYKD 56 (290)
Q Consensus 12 ~~~aiacfL~~~Gadl~~~n~~g~tpldl~~d~~~~~~l~~~~~~ 56 (290)
..++|.=||+.-||+++.+|+-|-|||--+--...+.-+.-+++.
T Consensus 45 GQl~ilefli~iGA~i~~kDKygITPLLsAvwEGH~~cVklLL~~ 89 (117)
T KOG4214|consen 45 GQLSILEFLISIGANIQDKDKYGITPLLSAVWEGHRDCVKLLLQN 89 (117)
T ss_pred chHHHHHHHHHhccccCCccccCCcHHHHHHHHhhHHHHHHHHHc
Confidence 456899999999999999999999998666444444444444433
No 183
>PHA02989 ankyrin repeat protein; Provisional
Probab=71.09 E-value=2.6 Score=41.74 Aligned_cols=27 Identities=30% Similarity=0.436 Sum_probs=24.4
Q ss_pred HHHHHHHhCCCCCcccccCCCCCCCCC
Q psy7970 15 SIACFLAGNGADLSIKNKKGQTPLDLC 41 (290)
Q Consensus 15 aiacfL~~~Gadl~~~n~~g~tpldl~ 41 (290)
.|+-+|+++|||++.+|..|.|||..+
T Consensus 89 ~iv~~Ll~~Gadin~~d~~g~tpL~~a 115 (494)
T PHA02989 89 KIVKLLLKFGADINLKTFNGVSPIVCF 115 (494)
T ss_pred HHHHHHHHCCCCCCCCCCCCCcHHHHH
Confidence 478999999999999999999999754
No 184
>PHA02878 ankyrin repeat protein; Provisional
Probab=70.79 E-value=3 Score=41.02 Aligned_cols=42 Identities=21% Similarity=0.315 Sum_probs=32.3
Q ss_pred HHHHHHHhCCCCCcccccC-CCCCCCCCCCchhHHHHHhhhhc
Q psy7970 15 SIACFLAGNGADLSIKNKK-GQTPLDLCPDPNLCKALTKCYKD 56 (290)
Q Consensus 15 aiacfL~~~Gadl~~~n~~-g~tpldl~~d~~~~~~l~~~~~~ 56 (290)
.++-+|++.|||++..|.. |.|||.++....-.+.+.-+.+.
T Consensus 148 ~iv~~Ll~~gadin~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~ 190 (477)
T PHA02878 148 EITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSY 190 (477)
T ss_pred HHHHHHHHcCCCCCccCCCCCCCHHHHHHhCCCHHHHHHHHHC
Confidence 4888999999999999888 99999988665555555555543
No 185
>KOG2114|consensus
Probab=70.41 E-value=4.1 Score=42.94 Aligned_cols=54 Identities=30% Similarity=0.679 Sum_probs=42.8
Q ss_pred hhHHHHHHHHHHhccCC------Ccccccccccccccc--ccCCccchHHHhcC-CCCCCCcc
Q psy7970 228 TSDIQKLQQQLQDIKEQ------TMCPVCLDRLKNMIF--LCGHGTCQMCGDRM-SECPICRK 281 (290)
Q Consensus 228 ~~~~~~l~~~~~~l~e~------~~C~IC~~~~~~~v~--~CGH~fC~~C~~~~-~~CP~CR~ 281 (290)
++++++..++++.++.. ..|..|--.+--|+. .|||.|=+.|..+- ..||.|+.
T Consensus 818 k~~i~e~r~~l~~lr~sa~i~q~skCs~C~~~LdlP~VhF~CgHsyHqhC~e~~~~~CP~C~~ 880 (933)
T KOG2114|consen 818 KKDIEEKRQELETLRTSAQIFQVSKCSACEGTLDLPFVHFLCGHSYHQHCLEDKEDKCPKCLP 880 (933)
T ss_pred HHHHHHHHHHHHHhhcccceeeeeeecccCCccccceeeeecccHHHHHhhccCcccCCccch
Confidence 56677777777777654 379999999988843 69999999999854 68999986
No 186
>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]
Probab=69.96 E-value=3 Score=34.78 Aligned_cols=43 Identities=19% Similarity=0.248 Sum_probs=32.8
Q ss_pred HHHHHHHHhCCC---CCcccccCCCCCCCCCCCchhHHHHHhhhhc
Q psy7970 14 ASIACFLAGNGA---DLSIKNKKGQTPLDLCPDPNLCKALTKCYKD 56 (290)
Q Consensus 14 ~aiacfL~~~Ga---dl~~~n~~g~tpldl~~d~~~~~~l~~~~~~ 56 (290)
..++-+|+..|+ +.+.+|..|+|||+++........+..+.+.
T Consensus 124 ~~~~~~ll~~g~~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~ 169 (235)
T COG0666 124 IEVAKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEA 169 (235)
T ss_pred HHHHHHHHHcCCCCCCccccCCCCCchhHHHHHcCchHHHHHHHhc
Confidence 688999999999 5656699999999999666555555555543
No 187
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=69.45 E-value=1.1 Score=32.67 Aligned_cols=41 Identities=22% Similarity=0.583 Sum_probs=18.1
Q ss_pred CCcccccccccc-c---cccc-----cCCccchHHHhcCC---------------CCCCCccccc
Q psy7970 244 QTMCPVCLDRLK-N---MIFL-----CGHGTCQMCGDRMS---------------ECPICRKAVE 284 (290)
Q Consensus 244 ~~~C~IC~~~~~-~---~v~~-----CGH~fC~~C~~~~~---------------~CP~CR~~i~ 284 (290)
+..|+||+..+. + |... |+..|=..|+..|+ .||.|+++|+
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~ 66 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS 66 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence 468999998765 3 2232 66555567777661 4999999885
No 188
>KOG4367|consensus
Probab=67.80 E-value=2.2 Score=41.74 Aligned_cols=33 Identities=27% Similarity=0.762 Sum_probs=29.1
Q ss_pred CCCCccccccccCcceEeecCCCcccccchhhhh
Q psy7970 76 VTLDECRICSDLKRDILFQPCGHVACCSVCAPRV 109 (290)
Q Consensus 76 ~~~~~C~iC~~~~~~~~~~PCgH~~~C~~Ca~~~ 109 (290)
++..+|.||..--++-+++||+|. +|..||.++
T Consensus 2 eeelkc~vc~~f~~epiil~c~h~-lc~~ca~~~ 34 (699)
T KOG4367|consen 2 EEELKCPVCGSFYREPIILPCSHN-LCQACARNI 34 (699)
T ss_pred cccccCceehhhccCceEeecccH-HHHHHHHhh
Confidence 456789999999999999999999 599999765
No 189
>KOG1952|consensus
Probab=67.72 E-value=4.9 Score=42.43 Aligned_cols=40 Identities=25% Similarity=0.642 Sum_probs=32.6
Q ss_pred CCCccccccccccc--cccc---cCCccchHHHhcC-----------CCCCCCccc
Q psy7970 243 EQTMCPVCLDRLKN--MIFL---CGHGTCQMCGDRM-----------SECPICRKA 282 (290)
Q Consensus 243 e~~~C~IC~~~~~~--~v~~---CGH~fC~~C~~~~-----------~~CP~CR~~ 282 (290)
..+.|.||.+.++. +++. |=|.|=..||.+| |.||.|...
T Consensus 190 ~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv 245 (950)
T KOG1952|consen 190 RKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSV 245 (950)
T ss_pred CceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccch
Confidence 56899999997765 4776 6689999999987 789999743
No 190
>KOG0505|consensus
Probab=67.29 E-value=5.9 Score=39.66 Aligned_cols=44 Identities=20% Similarity=0.345 Sum_probs=39.1
Q ss_pred HHHHHHHhCCCCCcccccCCCCCCCCCCCchhHHHHHhhhhccc
Q psy7970 15 SIACFLAGNGADLSIKNKKGQTPLDLCPDPNLCKALTKCYKDKE 58 (290)
Q Consensus 15 aiacfL~~~Gadl~~~n~~g~tpldl~~d~~~~~~l~~~~~~~~ 58 (290)
.+.-||+.+||+||..+..|.|||+-...+....++..+.+...
T Consensus 87 e~v~~l~e~ga~Vn~~d~e~wtPlhaaascg~~~i~~~li~~gA 130 (527)
T KOG0505|consen 87 EMVKFLVENGANVNAQDNEGWTPLHAAASCGYLNIVEYLIQHGA 130 (527)
T ss_pred HHHHHHHHhcCCccccccccCCcchhhcccccHHHHHHHHHhhh
Confidence 68889999999999999999999999999988888777776544
No 191
>KOG0825|consensus
Probab=66.87 E-value=2.4 Score=44.34 Aligned_cols=30 Identities=23% Similarity=0.432 Sum_probs=24.2
Q ss_pred EeCCCCeecchhhHhcC----CCCCCCCccccccc
Q psy7970 140 FKPCYHMVACESCASLM----KKCVQCRTQIDHMH 170 (290)
Q Consensus 140 ~~PCgH~~~C~~Ca~~~----~~Cp~Cr~~i~~~~ 170 (290)
-.+|+|. +|..|.... ..||+||..+.+++
T Consensus 141 ~k~c~H~-FC~~Ci~sWsR~aqTCPiDR~EF~~v~ 174 (1134)
T KOG0825|consen 141 EKHTAHY-FCEECVGSWSRCAQTCPVDRGEFGEVK 174 (1134)
T ss_pred ccccccc-cHHHHhhhhhhhcccCchhhhhhheee
Confidence 3579999 999999643 69999998877654
No 192
>KOG4177|consensus
Probab=65.73 E-value=3.9 Score=44.82 Aligned_cols=43 Identities=28% Similarity=0.359 Sum_probs=33.0
Q ss_pred HHHHHHHhCCCCCcccccCCCCCCCCCCCchhHHHHHhhhhcc
Q psy7970 15 SIACFLAGNGADLSIKNKKGQTPLDLCPDPNLCKALTKCYKDK 57 (290)
Q Consensus 15 aiacfL~~~Gadl~~~n~~g~tpldl~~d~~~~~~l~~~~~~~ 57 (290)
.+.-||+++|||++.+++.|+|||+.+.-......+.=+.+..
T Consensus 554 ~~VkfLLe~gAdv~ak~~~G~TPLH~Aa~~G~~~i~~LLlk~G 596 (1143)
T KOG4177|consen 554 DLVKFLLEHGADVNAKDKLGYTPLHQAAQQGHNDIAELLLKHG 596 (1143)
T ss_pred hHHHHhhhCCccccccCCCCCChhhHHHHcChHHHHHHHHHcC
Confidence 6788999999999999999999999987666555544444443
No 193
>PHA02876 ankyrin repeat protein; Provisional
Probab=65.63 E-value=3.1 Score=42.90 Aligned_cols=41 Identities=17% Similarity=0.213 Sum_probs=28.6
Q ss_pred HHHHHHHhCCCCCcccccCCCCCCCCCCCchhHHHHHhhhh
Q psy7970 15 SIACFLAGNGADLSIKNKKGQTPLDLCPDPNLCKALTKCYK 55 (290)
Q Consensus 15 aiacfL~~~Gadl~~~n~~g~tpldl~~d~~~~~~l~~~~~ 55 (290)
.++-+|+..|||++.+|..|+|||.++...+..+.+..+.+
T Consensus 356 ~iv~lLl~~gadin~~d~~G~TpLh~Aa~~~~~~iv~~Ll~ 396 (682)
T PHA02876 356 DIVITLLELGANVNARDYCDKTPIHYAAVRNNVVIINTLLD 396 (682)
T ss_pred HHHHHHHHcCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence 45667788888888888888888888755555555555543
No 194
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=65.62 E-value=3.6 Score=43.66 Aligned_cols=42 Identities=21% Similarity=0.252 Sum_probs=32.1
Q ss_pred HHHHHHHhCCCCCcccccCCCCCCCCCCCchhHHHHHhhhhc
Q psy7970 15 SIACFLAGNGADLSIKNKKGQTPLDLCPDPNLCKALTKCYKD 56 (290)
Q Consensus 15 aiacfL~~~Gadl~~~n~~g~tpldl~~d~~~~~~l~~~~~~ 56 (290)
.++-.|+++|+|++..|.+|+|||+++......+.+.-+.+.
T Consensus 539 ~~l~~Ll~~G~d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ 580 (823)
T PLN03192 539 ALLEELLKAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKH 580 (823)
T ss_pred HHHHHHHHCCCCCCCCCCCCCCHHHHHHHcChHHHHHHHHhc
Confidence 677888888888888888888888888666666655555543
No 195
>KOG4739|consensus
Probab=65.50 E-value=3.9 Score=36.91 Aligned_cols=39 Identities=26% Similarity=0.678 Sum_probs=27.2
Q ss_pred ccccccc--CCceEEeCCCCeecchhhHhc--CCCCCCCCcccc
Q psy7970 128 CMVCSLK--KASVLFKPCYHMVACESCASL--MKKCVQCRTQID 167 (290)
Q Consensus 128 C~~C~~~--~~~~~~~PCgH~~~C~~Ca~~--~~~Cp~Cr~~i~ 167 (290)
|-.|... ...-.++-|+|+ .|..|... ...||.|+++|.
T Consensus 6 Cn~C~~~~~~~~f~LTaC~Hv-fC~~C~k~~~~~~C~lCkk~ir 48 (233)
T KOG4739|consen 6 CNKCFRFPSQDPFFLTACRHV-FCEPCLKASSPDVCPLCKKSIR 48 (233)
T ss_pred eccccccCCCCceeeeechhh-hhhhhcccCCccccccccceee
Confidence 4444332 333455689999 99999964 359999999843
No 196
>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
Probab=64.46 E-value=3.9 Score=42.43 Aligned_cols=42 Identities=21% Similarity=0.233 Sum_probs=34.2
Q ss_pred HHHHHHHhCCCCCcccccCCCCCCCCCCCchhHHHHHhhhhc
Q psy7970 15 SIACFLAGNGADLSIKNKKGQTPLDLCPDPNLCKALTKCYKD 56 (290)
Q Consensus 15 aiacfL~~~Gadl~~~n~~g~tpldl~~d~~~~~~l~~~~~~ 56 (290)
.++-+|+..|||++.+|..|+|||+++...+..+.+..+.+.
T Consensus 96 ~~vk~LL~~Gadin~~d~~G~TpLh~Aa~~g~~eiv~~LL~~ 137 (664)
T PTZ00322 96 VGARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEF 137 (664)
T ss_pred HHHHHHHHCCCCCCCcCCCCCcHHHHHHHCCCHHHHHHHHHC
Confidence 456889999999999999999999999766666666655544
No 197
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=64.33 E-value=5.8 Score=30.24 Aligned_cols=52 Identities=23% Similarity=0.506 Sum_probs=30.6
Q ss_pred ccCCCCCCcchhhccccccccccccCC--ceEEeCCCCeecchhhHhc-------CCCCCCCCcccc
Q psy7970 110 KKCLICREPVEKRIKIEECMVCSLKKA--SVLFKPCYHMVACESCASL-------MKKCVQCRTQID 167 (290)
Q Consensus 110 ~~Cp~Cr~~i~~~~~i~~C~~C~~~~~--~~~~~PCgH~~~C~~Ca~~-------~~~Cp~Cr~~i~ 167 (290)
..|+|||.++.... ..|.-... -+++-.|+|. +=..|..+ -..||+||++.+
T Consensus 22 d~CgICr~~fdg~C-----p~Ck~Pgd~Cplv~g~C~H~-FH~hCI~kWl~~~~~~~~CPmCR~~w~ 82 (85)
T PF12861_consen 22 DVCGICRMPFDGCC-----PDCKFPGDDCPLVWGKCSHN-FHMHCILKWLSTQSSKGQCPMCRQPWK 82 (85)
T ss_pred CceeeEecccccCC-----CCccCCCCCCceeeccCccH-HHHHHHHHHHccccCCCCCCCcCCeee
Confidence 35666666665432 22222111 1244459998 77889842 369999998753
No 198
>KOG2932|consensus
Probab=64.24 E-value=2.5 Score=39.69 Aligned_cols=29 Identities=28% Similarity=0.739 Sum_probs=23.9
Q ss_pred ccccCCccchHHHhcC--CCCCCCccccccc
Q psy7970 258 IFLCGHGTCQMCGDRM--SECPICRKAVEKR 286 (290)
Q Consensus 258 v~~CGH~fC~~C~~~~--~~CP~CR~~i~~~ 286 (290)
+++|-|.||..|.+.- +.||.|-..|.+.
T Consensus 106 mIPCkHvFCl~CAr~~~dK~Cp~C~d~VqrI 136 (389)
T KOG2932|consen 106 MIPCKHVFCLECARSDSDKICPLCDDRVQRI 136 (389)
T ss_pred ccccchhhhhhhhhcCccccCcCcccHHHHH
Confidence 5679999999999865 5899998877553
No 199
>KOG0826|consensus
Probab=64.22 E-value=3.2 Score=39.16 Aligned_cols=42 Identities=26% Similarity=0.608 Sum_probs=34.2
Q ss_pred cCCCcccccccccccccc--ccCCccchHHHhcC----CCCCCCcccc
Q psy7970 242 KEQTMCPVCLDRLKNMIF--LCGHGTCQMCGDRM----SECPICRKAV 283 (290)
Q Consensus 242 ~e~~~C~IC~~~~~~~v~--~CGH~fC~~C~~~~----~~CP~CR~~i 283 (290)
.+...||||+....||.. .-|.+||+.|+... .+||+-..|.
T Consensus 298 ~~~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~~~~~CPVT~~p~ 345 (357)
T KOG0826|consen 298 PDREVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVVNYGHCPVTGYPA 345 (357)
T ss_pred CccccChhHHhccCCCceEEecceEEeHHHHHHHHHhcCCCCccCCcc
Confidence 456899999999999943 38999999999864 5899876664
No 200
>KOG0311|consensus
Probab=63.64 E-value=0.92 Score=43.14 Aligned_cols=44 Identities=20% Similarity=0.464 Sum_probs=33.5
Q ss_pred ccccccccccCCceEEeC-CCCeecchhhHhc-----CCCCCCCCcccccc
Q psy7970 125 IEECMVCSLKKASVLFKP-CYHMVACESCASL-----MKKCVQCRTQIDHM 169 (290)
Q Consensus 125 i~~C~~C~~~~~~~~~~P-CgH~~~C~~Ca~~-----~~~Cp~Cr~~i~~~ 169 (290)
-..|.+|++....+...| |+|. +|..|... -+.||.||+.....
T Consensus 43 ~v~c~icl~llk~tmttkeClhr-fc~~ci~~a~r~gn~ecptcRk~l~Sk 92 (381)
T KOG0311|consen 43 QVICPICLSLLKKTMTTKECLHR-FCFDCIWKALRSGNNECPTCRKKLVSK 92 (381)
T ss_pred hhccHHHHHHHHhhcccHHHHHH-HHHHHHHHHHHhcCCCCchHHhhcccc
Confidence 357888888766666555 9999 99999943 37999999876543
No 201
>PHA03096 p28-like protein; Provisional
Probab=63.40 E-value=4.2 Score=37.90 Aligned_cols=29 Identities=24% Similarity=0.519 Sum_probs=23.3
Q ss_pred Ccccccccccccc--------ccc-cCCccchHHHhcC
Q psy7970 245 TMCPVCLDRLKNM--------IFL-CGHGTCQMCGDRM 273 (290)
Q Consensus 245 ~~C~IC~~~~~~~--------v~~-CGH~fC~~C~~~~ 273 (290)
..|.||++....- +++ |-|.||..|+..|
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~w 216 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIW 216 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHH
Confidence 7899999965421 334 9999999999987
No 202
>KOG0510|consensus
Probab=62.52 E-value=6.7 Score=41.35 Aligned_cols=43 Identities=23% Similarity=0.270 Sum_probs=37.1
Q ss_pred HHHHHHHhCCCCCcccccCCCCCCCCCCCchhHHHHHhhhhcc
Q psy7970 15 SIACFLAGNGADLSIKNKKGQTPLDLCPDPNLCKALTKCYKDK 57 (290)
Q Consensus 15 aiacfL~~~Gadl~~~n~~g~tpldl~~d~~~~~~l~~~~~~~ 57 (290)
-+.=||.+.|||+...|.++++|++++++.+.-+.+.-+.+.+
T Consensus 102 ~~i~~Lls~gad~~~~n~~~~aplh~A~~~~~~s~L~~Ll~~~ 144 (929)
T KOG0510|consen 102 DKIQVLLSYGADTPLRNLNKNAPLHLAADSGNYSCLKLLLDYG 144 (929)
T ss_pred HHHHHHHhcCCCCChhhhhccCchhhccccchHHHHHHHHHhc
Confidence 4567899999999999999999999999988777777777655
No 203
>KOG4367|consensus
Probab=60.65 E-value=4 Score=40.00 Aligned_cols=28 Identities=32% Similarity=0.743 Sum_probs=25.2
Q ss_pred ccccccccCCceEEeCCCCeecchhhHhc
Q psy7970 127 ECMVCSLKKASVLFKPCYHMVACESCASL 155 (290)
Q Consensus 127 ~C~~C~~~~~~~~~~PCgH~~~C~~Ca~~ 155 (290)
.|.+|..-..+.+++||||. .|..||..
T Consensus 6 kc~vc~~f~~epiil~c~h~-lc~~ca~~ 33 (699)
T KOG4367|consen 6 KCPVCGSFYREPIILPCSHN-LCQACARN 33 (699)
T ss_pred cCceehhhccCceEeecccH-HHHHHHHh
Confidence 68899888889999999999 99999964
No 204
>KOG0828|consensus
Probab=59.81 E-value=3.7 Score=40.79 Aligned_cols=44 Identities=23% Similarity=0.621 Sum_probs=32.8
Q ss_pred ccCCCcccccccccc-----------------cc-ccccCCccchHHHhcC----C-CCCCCccccc
Q psy7970 241 IKEQTMCPVCLDRLK-----------------NM-IFLCGHGTCQMCGDRM----S-ECPICRKAVE 284 (290)
Q Consensus 241 l~e~~~C~IC~~~~~-----------------~~-v~~CGH~fC~~C~~~~----~-~CP~CR~~i~ 284 (290)
.+....|+|||.-.- +- +++|.|.|=..|+.+| + .||.||.++.
T Consensus 568 ~~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLP 634 (636)
T KOG0828|consen 568 VRRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLP 634 (636)
T ss_pred hhccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCC
Confidence 356688999996431 11 2359999999999987 2 7999999864
No 205
>PF10929 DUF2811: Protein of unknown function (DUF2811); InterPro: IPR021231 This is a bacterial family of uncharacterised proteins.
Probab=57.97 E-value=8.3 Score=27.10 Aligned_cols=17 Identities=35% Similarity=0.497 Sum_probs=14.0
Q ss_pred chhHHHHHHHHHhCCCC
Q psy7970 10 KKSSASIACFLAGNGAD 26 (290)
Q Consensus 10 ~~~~~aiacfL~~~Gad 26 (290)
.-.++|||-||.+||.+
T Consensus 28 Rl~~aALa~FL~QnG~~ 44 (57)
T PF10929_consen 28 RLFQAALAGFLLQNGCQ 44 (57)
T ss_pred HHHHHHHHHHHHHcCch
Confidence 34678999999999954
No 206
>KOG1001|consensus
Probab=56.98 E-value=4.5 Score=42.11 Aligned_cols=41 Identities=24% Similarity=0.563 Sum_probs=35.6
Q ss_pred cccccccccCCceEEeCCCCeecchhhHhc------CCCCCCCCccccc
Q psy7970 126 EECMVCSLKKASVLFKPCYHMVACESCASL------MKKCVQCRTQIDH 168 (290)
Q Consensus 126 ~~C~~C~~~~~~~~~~PCgH~~~C~~Ca~~------~~~Cp~Cr~~i~~ 168 (290)
+.|.+|.+ ....++.+|||. .|.+|... ...||.||..+..
T Consensus 455 ~~c~ic~~-~~~~~it~c~h~-~c~~c~~~~i~~~~~~~~~~cr~~l~~ 501 (674)
T KOG1001|consen 455 HWCHICCD-LDSFFITRCGHD-FCVECLKKSIQQSENAPCPLCRNVLKE 501 (674)
T ss_pred cccccccc-cccceeecccch-HHHHHHHhccccccCCCCcHHHHHHHH
Confidence 79999999 889999999999 99999953 3589999977654
No 207
>KOG0510|consensus
Probab=56.76 E-value=8.2 Score=40.74 Aligned_cols=30 Identities=43% Similarity=0.650 Sum_probs=25.9
Q ss_pred HHHHHHHhCCCCCcccccCCCCCCCCCCCc
Q psy7970 15 SIACFLAGNGADLSIKNKKGQTPLDLCPDP 44 (290)
Q Consensus 15 aiacfL~~~Gadl~~~n~~g~tpldl~~d~ 44 (290)
++.-.|+++|||++.+|.+|+|.+|+.++.
T Consensus 391 ~av~~Li~~Ga~I~~~n~~g~SA~~~~~~~ 420 (929)
T KOG0510|consen 391 SAVQKLISHGADIGVKNKKGKSAFDTRPDR 420 (929)
T ss_pred HHHHHHHHcCCceeeccccccccccccccc
Confidence 667789999999999999999999976544
No 208
>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.
Probab=56.55 E-value=6.8 Score=29.33 Aligned_cols=41 Identities=29% Similarity=0.439 Sum_probs=30.7
Q ss_pred HHHHHHHhCCCCCcccccCCCCCCCCCCCchhHHHHHhhhh
Q psy7970 15 SIACFLAGNGADLSIKNKKGQTPLDLCPDPNLCKALTKCYK 55 (290)
Q Consensus 15 aiacfL~~~Gadl~~~n~~g~tpldl~~d~~~~~~l~~~~~ 55 (290)
-++-+|+..|++++..|..|.||+.++...+....+..+.+
T Consensus 54 ~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~ 94 (126)
T cd00204 54 EIVKLLLEKGADVNARDKDGNTPLHLAARNGNLDVVKLLLK 94 (126)
T ss_pred HHHHHHHHcCCCccccCCCCCCHHHHHHHcCcHHHHHHHHH
Confidence 67788889998888888889999988855555555554444
No 209
>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]
Probab=55.35 E-value=15 Score=30.40 Aligned_cols=42 Identities=24% Similarity=0.251 Sum_probs=36.4
Q ss_pred HHHHHHHhCCCCCcccccCCCCCCCCCCCchhHHHHHhhhhc
Q psy7970 15 SIACFLAGNGADLSIKNKKGQTPLDLCPDPNLCKALTKCYKD 56 (290)
Q Consensus 15 aiacfL~~~Gadl~~~n~~g~tpldl~~d~~~~~~l~~~~~~ 56 (290)
.++-+|+..|++++.+|..|.|++++.........+..+.+.
T Consensus 161 ~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~ 202 (235)
T COG0666 161 DIVELLLEAGADPNSRNSYGVTALDPAAKNGRIELVKLLLDK 202 (235)
T ss_pred HHHHHHHhcCCCCcccccCCCcchhhhcccchHHHHHHHHhc
Confidence 788899999999999999999999999888777777666643
No 210
>PHA02792 ankyrin-like protein; Provisional
Probab=54.96 E-value=12 Score=38.74 Aligned_cols=45 Identities=4% Similarity=0.005 Sum_probs=33.8
Q ss_pred HHHHHHHHHhCCCCCcccccCCCCCCCCCC-CchhHHHHHhhhhcc
Q psy7970 13 SASIACFLAGNGADLSIKNKKGQTPLDLCP-DPNLCKALTKCYKDK 57 (290)
Q Consensus 13 ~~aiacfL~~~Gadl~~~n~~g~tpldl~~-d~~~~~~l~~~~~~~ 57 (290)
-.-++-+|+.+|||++.++..|.+|+.++. +.+..+.+.-+....
T Consensus 84 ~lElvk~LI~~GAdvN~~~n~~~~~l~ya~~~~~~~eivk~Ll~~G 129 (631)
T PHA02792 84 DIELLKLLISKGLEINSIKNGINIVEKYATTSNPNVDVFKLLLDKG 129 (631)
T ss_pred cHHHHHHHHHcCCCcccccCCCCcceeEeecCCCChHHHHHHHHCC
Confidence 347899999999999999999999999983 335555555555443
No 211
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=54.85 E-value=10 Score=22.26 Aligned_cols=12 Identities=33% Similarity=0.664 Sum_probs=7.6
Q ss_pred ccCCCCCCcchh
Q psy7970 110 KKCLICREPVEK 121 (290)
Q Consensus 110 ~~Cp~Cr~~i~~ 121 (290)
++||.|++.|..
T Consensus 1 K~CP~C~~~V~~ 12 (26)
T PF10571_consen 1 KTCPECGAEVPE 12 (26)
T ss_pred CcCCCCcCCchh
Confidence 357777777643
No 212
>KOG3676|consensus
Probab=54.10 E-value=4.8 Score=42.16 Aligned_cols=27 Identities=30% Similarity=0.475 Sum_probs=21.2
Q ss_pred HHHHHHHhCCCCCcccccCCCCCCCCC
Q psy7970 15 SIACFLAGNGADLSIKNKKGQTPLDLC 41 (290)
Q Consensus 15 aiacfL~~~Gadl~~~n~~g~tpldl~ 41 (290)
.|.-+|++.|||++++|..|.|.|+.+
T Consensus 254 eivrlLl~~gAd~~aqDS~GNTVLH~l 280 (782)
T KOG3676|consen 254 EIVRLLLAHGADPNAQDSNGNTVLHML 280 (782)
T ss_pred HHHHHHHhcCCCCCccccCCChHHHHH
Confidence 466778888888888888888887766
No 213
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=52.24 E-value=4.2 Score=29.86 Aligned_cols=24 Identities=21% Similarity=0.479 Sum_probs=12.9
Q ss_pred cCCCCCCcchhhcccccccccccc
Q psy7970 111 KCLICREPVEKRIKIEECMVCSLK 134 (290)
Q Consensus 111 ~Cp~Cr~~i~~~~~i~~C~~C~~~ 134 (290)
.||.|.+++...-..+-|..|...
T Consensus 3 ~CP~C~~~L~~~~~~~~C~~C~~~ 26 (70)
T PF07191_consen 3 TCPKCQQELEWQGGHYHCEACQKD 26 (70)
T ss_dssp B-SSS-SBEEEETTEEEETTT--E
T ss_pred cCCCCCCccEEeCCEEECcccccc
Confidence 577777776665556666666554
No 214
>KOG1493|consensus
Probab=52.18 E-value=5 Score=29.97 Aligned_cols=42 Identities=24% Similarity=0.570 Sum_probs=28.6
Q ss_pred CCCcccccccccccc--cc-ccCCccchHHHhcCC-------CCCCCccccc
Q psy7970 243 EQTMCPVCLDRLKNM--IF-LCGHGTCQMCGDRMS-------ECPICRKAVE 284 (290)
Q Consensus 243 e~~~C~IC~~~~~~~--v~-~CGH~fC~~C~~~~~-------~CP~CR~~i~ 284 (290)
-+-.||-|-----|- |+ .|.|.|=..|+.+|. .||+||+.+.
T Consensus 30 Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~ 81 (84)
T KOG1493|consen 30 FDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ 81 (84)
T ss_pred cCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence 345556654333332 33 399999999999873 6999999764
No 215
>KOG0828|consensus
Probab=50.37 E-value=5 Score=39.94 Aligned_cols=56 Identities=32% Similarity=0.785 Sum_probs=40.0
Q ss_pred ccCCCCCCcchhhcccccccccccc-CCceEEeCCCCeecchhhHhc-C---C-CCCCCCccc
Q psy7970 110 KKCLICREPVEKRIKIEECMVCSLK-KASVLFKPCYHMVACESCASL-M---K-KCVQCRTQI 166 (290)
Q Consensus 110 ~~Cp~Cr~~i~~~~~i~~C~~C~~~-~~~~~~~PCgH~~~C~~Ca~~-~---~-~Cp~Cr~~i 166 (290)
.-|++|-++|.-+.....|.+=... ..+-.+.||.|. .=..|..+ | | .||.||.++
T Consensus 572 ~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~Hi-fH~~CL~~WMd~ykl~CPvCR~pL 633 (636)
T KOG0828|consen 572 NDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHI-FHRQCLLQWMDTYKLICPVCRCPL 633 (636)
T ss_pred ccceEeccccceeeccCcchhhhhhhhccccccchHHH-HHHHHHHHHHhhhcccCCccCCCC
Confidence 4577777777777776666655332 336788899998 66888854 2 3 899999875
No 216
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=49.61 E-value=4 Score=32.73 Aligned_cols=40 Identities=28% Similarity=0.678 Sum_probs=26.4
Q ss_pred CCCcccccccccc---cc-cc-c-cCCccchHHHhcC-----CCCCCCccc
Q psy7970 243 EQTMCPVCLDRLK---NM-IF-L-CGHGTCQMCGDRM-----SECPICRKA 282 (290)
Q Consensus 243 e~~~C~IC~~~~~---~~-v~-~-CGH~fC~~C~~~~-----~~CP~CR~~ 282 (290)
.+..|.+|...|. +. .. . |+|.+|..|.... |.|-+|.+.
T Consensus 53 ~~~~C~~C~~~fg~l~~~~~~C~~C~~~VC~~C~~~~~~~~~WlC~vC~k~ 103 (118)
T PF02318_consen 53 GERHCARCGKPFGFLFNRGRVCVDCKHRVCKKCGVYSKKEPIWLCKVCQKQ 103 (118)
T ss_dssp CCSB-TTTS-BCSCTSTTCEEETTTTEEEETTSEEETSSSCCEEEHHHHHH
T ss_pred CCcchhhhCCcccccCCCCCcCCcCCccccCccCCcCCCCCCEEChhhHHH
Confidence 5679999987543 22 22 2 9999999998743 568777653
No 217
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=49.50 E-value=7.7 Score=32.07 Aligned_cols=40 Identities=28% Similarity=0.586 Sum_probs=29.5
Q ss_pred HHHHHHhccC--CCccccccccccc--ccc--ccC------CccchHHHhcC
Q psy7970 234 LQQQLQDIKE--QTMCPVCLDRLKN--MIF--LCG------HGTCQMCGDRM 273 (290)
Q Consensus 234 l~~~~~~l~e--~~~C~IC~~~~~~--~v~--~CG------H~fC~~C~~~~ 273 (290)
+.+-..++.. ...|.||++...+ -|+ +|| |.||..|+.+|
T Consensus 14 l~~lf~~~w~~~~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw 65 (134)
T PF05883_consen 14 LERLFNDQWPRCTVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRW 65 (134)
T ss_pred HHHHHHHHccccCeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHH
Confidence 4444555545 6899999998888 333 477 55999999988
No 218
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=48.18 E-value=15 Score=33.25 Aligned_cols=33 Identities=30% Similarity=0.459 Sum_probs=26.2
Q ss_pred CcccchhHH-HHHHHHHhCCCCCcccccCCCCCC
Q psy7970 6 QAADKKSSA-SIACFLAGNGADLSIKNKKGQTPL 38 (290)
Q Consensus 6 ~~~~~~~~~-aiacfL~~~Gadl~~~n~~g~tpl 38 (290)
.|++|.+++ ++|..|++.|..+.+-|-+.+.||
T Consensus 11 GGaGKTT~~~~LAs~la~~G~~V~lIDaDpn~pl 44 (231)
T PF07015_consen 11 GGAGKTTAAMALASELAARGARVALIDADPNQPL 44 (231)
T ss_pred CCCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCcH
Confidence 466666665 999999999999988777777665
No 219
>KOG4185|consensus
Probab=47.21 E-value=12 Score=34.46 Aligned_cols=38 Identities=29% Similarity=0.773 Sum_probs=29.8
Q ss_pred Ccccccccccc-c-----c-ccc--------cCCccchHHHhcC-----CCCCCCccc
Q psy7970 245 TMCPVCLDRLK-N-----M-IFL--------CGHGTCQMCGDRM-----SECPICRKA 282 (290)
Q Consensus 245 ~~C~IC~~~~~-~-----~-v~~--------CGH~fC~~C~~~~-----~~CP~CR~~ 282 (290)
..|.||...+. + | +.. |||..|..|+... ..||.||..
T Consensus 208 ~~c~ic~~~~~~n~~~~~p~vl~~~~~~~~~c~htlc~~c~~~~l~~~~~~cp~~~~~ 265 (296)
T KOG4185|consen 208 KLCEICERIYSENDEKLAPLVLSLSRLKEKIEGHTLCKECIDTILLQAGIKCPFCTWS 265 (296)
T ss_pred HHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHhcchHHHHHHhhhcCCcccce
Confidence 56999988776 2 2 445 9999999999864 479999864
No 220
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=46.79 E-value=6 Score=35.88 Aligned_cols=43 Identities=30% Similarity=0.855 Sum_probs=29.7
Q ss_pred ccCCCCCCcchhhccccccccccccCCceEEeC-CCCeecchhhHhcC-----CCCC--CCCc
Q psy7970 110 KKCLICREPVEKRIKIEECMVCSLKKASVLFKP-CYHMVACESCASLM-----KKCV--QCRT 164 (290)
Q Consensus 110 ~~Cp~Cr~~i~~~~~i~~C~~C~~~~~~~~~~P-CgH~~~C~~Ca~~~-----~~Cp--~Cr~ 164 (290)
.+||+|.+...- .+....++-| |-|. .|+.|..|+ -.|| -|.+
T Consensus 11 ~~CPvCksDrYL-----------nPdik~linPECyHr-mCESCvdRIFs~GpAqCP~~gC~k 61 (314)
T COG5220 11 RRCPVCKSDRYL-----------NPDIKILINPECYHR-MCESCVDRIFSRGPAQCPYKGCGK 61 (314)
T ss_pred ccCCcccccccc-----------CCCeEEEECHHHHHH-HHHHHHHHHhcCCCCCCCCccHHH
Confidence 367777766542 2233456668 9999 999999775 5898 7763
No 221
>KOG0298|consensus
Probab=45.73 E-value=5.7 Score=43.76 Aligned_cols=41 Identities=41% Similarity=0.972 Sum_probs=33.6
Q ss_pred cCCCcccccccccccc--ccccCCccchHHHhcC----CCCCCCccc
Q psy7970 242 KEQTMCPVCLDRLKNM--IFLCGHGTCQMCGDRM----SECPICRKA 282 (290)
Q Consensus 242 ~e~~~C~IC~~~~~~~--v~~CGH~fC~~C~~~~----~~CP~CR~~ 282 (290)
-....|+||.+.+.+- ++.|||-+|..|...| ..||+|...
T Consensus 1151 ~~~~~c~ic~dil~~~~~I~~cgh~~c~~c~~~~l~~~s~~~~~ksi 1197 (1394)
T KOG0298|consen 1151 SGHFVCEICLDILRNQGGIAGCGHEPCCRCDELWLYASSRCPICKSI 1197 (1394)
T ss_pred hcccchHHHHHHHHhcCCeeeechhHhhhHHHHHHHHhccCcchhhh
Confidence 4456999999999865 6679999999999987 479999643
No 222
>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.
Probab=45.55 E-value=11 Score=28.13 Aligned_cols=42 Identities=26% Similarity=0.425 Sum_probs=31.1
Q ss_pred HHHHHHHHhCCCCCcccccCCCCCCCCCCCchhHHHHHhhhh
Q psy7970 14 ASIACFLAGNGADLSIKNKKGQTPLDLCPDPNLCKALTKCYK 55 (290)
Q Consensus 14 ~aiacfL~~~Gadl~~~n~~g~tpldl~~d~~~~~~l~~~~~ 55 (290)
.-++-+|+..|++.+.++..|.+||.++....-.+.+..+..
T Consensus 20 ~~~i~~li~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~ 61 (126)
T cd00204 20 LEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLE 61 (126)
T ss_pred HHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHH
Confidence 367889999999999999999999998854444444444443
No 223
>PF10235 Cript: Microtubule-associated protein CRIPT; InterPro: IPR019367 The CRIPT protein is a cytoskeletal protein involved in microtubule production. This C-terminal domain is essential for binding to the PDZ3 domain of the SAP90 protein, one of a super-family of PDZ-containing proteins that play an important role in coupling the membrane ion channels with their signalling partners [].
Probab=45.31 E-value=14 Score=28.51 Aligned_cols=37 Identities=24% Similarity=0.717 Sum_probs=30.6
Q ss_pred CCccccccccccccccccCCccchHHHhcCCCCCCCccccc
Q psy7970 244 QTMCPVCLDRLKNMIFLCGHGTCQMCGDRMSECPICRKAVE 284 (290)
Q Consensus 244 ~~~C~IC~~~~~~~v~~CGH~fC~~C~~~~~~CP~CR~~i~ 284 (290)
...|.||-.....+ ||.||..|.-.--.|.+|-+.+.
T Consensus 44 ~~~C~~CK~~v~q~----g~~YCq~CAYkkGiCamCGKki~ 80 (90)
T PF10235_consen 44 SSKCKICKTKVHQP----GAKYCQTCAYKKGICAMCGKKIL 80 (90)
T ss_pred CccccccccccccC----CCccChhhhcccCcccccCCeec
Confidence 46899997665544 99999999988889999999873
No 224
>KOG1812|consensus
Probab=45.11 E-value=9.5 Score=37.03 Aligned_cols=30 Identities=27% Similarity=0.790 Sum_probs=22.5
Q ss_pred CCcccccc-ccccc-ccc---ccCCccchHHHhcC
Q psy7970 244 QTMCPVCL-DRLKN-MIF---LCGHGTCQMCGDRM 273 (290)
Q Consensus 244 ~~~C~IC~-~~~~~-~v~---~CGH~fC~~C~~~~ 273 (290)
...|.||. +.... -+| .|+|.||..|+.+.
T Consensus 146 ~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~ 180 (384)
T KOG1812|consen 146 KEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQH 180 (384)
T ss_pred cccCccCccccccHhhhHHHhcccchhhhHHhHHH
Confidence 57899999 44433 244 39999999999964
No 225
>KOG4214|consensus
Probab=44.71 E-value=11 Score=29.66 Aligned_cols=36 Identities=22% Similarity=0.360 Sum_probs=29.7
Q ss_pred HHHHHHHhCCCCCcccccCCCCCCCCCCCchhHHHH
Q psy7970 15 SIACFLAGNGADLSIKNKKGQTPLDLCPDPNLCKAL 50 (290)
Q Consensus 15 aiacfL~~~Gadl~~~n~~g~tpldl~~d~~~~~~l 50 (290)
...-||+++|||-+++--.|++-++-.....++.+|
T Consensus 81 ~cVklLL~~GAdrt~~~PdG~~~~eate~edIr~LL 116 (117)
T KOG4214|consen 81 DCVKLLLQNGADRTIHAPDGTALIEATEEEDIRELL 116 (117)
T ss_pred HHHHHHHHcCcccceeCCCchhHHhhccHHHHHHHh
Confidence 456799999999999999999988877766666654
No 226
>KOG0521|consensus
Probab=43.71 E-value=11 Score=40.03 Aligned_cols=40 Identities=25% Similarity=0.307 Sum_probs=29.7
Q ss_pred HHHHHHHhCCCCCcccccCCCCCCCCCCCchhHHHHHhhh
Q psy7970 15 SIACFLAGNGADLSIKNKKGQTPLDLCPDPNLCKALTKCY 54 (290)
Q Consensus 15 aiacfL~~~Gadl~~~n~~g~tpldl~~d~~~~~~l~~~~ 54 (290)
.+-=||.++|||+|.+|.+|++||+.++-.......-.++
T Consensus 670 ~~~e~ll~~ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll 709 (785)
T KOG0521|consen 670 GAVELLLQNGADVNALDSKGRTPLHHATASGHTSIACLLL 709 (785)
T ss_pred HHHHHHHhcCCcchhhhccCCCcchhhhhhcccchhhhhc
Confidence 3445899999999999999999999986555444433333
No 227
>TIGR00870 trp transient-receptor-potential calcium channel protein. after chronic exposure to capsaicin. (McCleskey and Gold, 1999).
Probab=43.66 E-value=4.7 Score=42.11 Aligned_cols=31 Identities=29% Similarity=0.325 Sum_probs=27.5
Q ss_pred HHHHHHHHhCCCCCcccccCCCCCCCCCCCc
Q psy7970 14 ASIACFLAGNGADLSIKNKKGQTPLDLCPDP 44 (290)
Q Consensus 14 ~aiacfL~~~Gadl~~~n~~g~tpldl~~d~ 44 (290)
..++-+|+++|||++.+|..|.|||+++.-.
T Consensus 188 ~~iv~lLl~~gadin~~d~~g~T~Lh~A~~~ 218 (743)
T TIGR00870 188 PSIVALLSEDPADILTADSLGNTLLHLLVME 218 (743)
T ss_pred HHHHHHHhcCCcchhhHhhhhhHHHHHHHhh
Confidence 4678899999999999999999999998544
No 228
>KOG0818|consensus
Probab=42.91 E-value=12 Score=37.36 Aligned_cols=36 Identities=28% Similarity=0.306 Sum_probs=29.8
Q ss_pred HHHHHHHHHhCCCCCcccccCCCCCCCCCCCchhHH
Q psy7970 13 SASIACFLAGNGADLSIKNKKGQTPLDLCPDPNLCK 48 (290)
Q Consensus 13 ~~aiacfL~~~Gadl~~~n~~g~tpldl~~d~~~~~ 48 (290)
.+.-|=.|+--|||+...|.+|.||+||+-+.+.-.
T Consensus 179 q~~Q~ElL~vYGAD~~a~d~~GmtP~~~AR~~gH~~ 214 (669)
T KOG0818|consen 179 QILQAELLAVYGADPGAQDSSGMTPVDYARQGGHHE 214 (669)
T ss_pred chhhhhHHhhccCCCCCCCCCCCcHHHHHHhcCchH
Confidence 346677889999999999999999999997765444
No 229
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=40.18 E-value=8.1 Score=41.52 Aligned_cols=45 Identities=20% Similarity=0.580 Sum_probs=33.6
Q ss_pred hccCCCcccccccccccc--cc------ccCCccchHHHhcCC------CCCCCccccc
Q psy7970 240 DIKEQTMCPVCLDRLKNM--IF------LCGHGTCQMCGDRMS------ECPICRKAVE 284 (290)
Q Consensus 240 ~l~e~~~C~IC~~~~~~~--v~------~CGH~fC~~C~~~~~------~CP~CR~~i~ 284 (290)
+.+....|+||+.++... .+ +|.|.|=..|+-+|+ .||.||..|+
T Consensus 1465 ~fsG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219 1465 KFSGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred hcCCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence 445567999999877632 22 267889889999883 7999997765
No 230
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=40.07 E-value=15 Score=27.77 Aligned_cols=40 Identities=25% Similarity=0.553 Sum_probs=29.0
Q ss_pred Ccccccccccccc-----cc-ccCCccchHHHhcCC----CCCCCccccc
Q psy7970 245 TMCPVCLDRLKNM-----IF-LCGHGTCQMCGDRMS----ECPICRKAVE 284 (290)
Q Consensus 245 ~~C~IC~~~~~~~-----v~-~CGH~fC~~C~~~~~----~CP~CR~~i~ 284 (290)
-.||-|....... +. .|.|.|=..||.+|. .||++|+++.
T Consensus 32 ~~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~Tk~~CPld~q~w~ 81 (88)
T COG5194 32 GTCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDTKGVCPLDRQTWV 81 (88)
T ss_pred CcCcccccCCCCCCcceEEEEecchHHHHHHHHHHHhhCCCCCCCCceeE
Confidence 4567776633221 33 399999999999983 6999999874
No 231
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=39.51 E-value=25 Score=24.67 Aligned_cols=44 Identities=25% Similarity=0.710 Sum_probs=29.7
Q ss_pred CCCccccccccc-ccc--ccccCC--ccchHHHhcC--CCCCCCccccccc
Q psy7970 243 EQTMCPVCLDRL-KNM--IFLCGH--GTCQMCGDRM--SECPICRKAVEKR 286 (290)
Q Consensus 243 e~~~C~IC~~~~-~~~--v~~CGH--~fC~~C~~~~--~~CP~CR~~i~~~ 286 (290)
-...|--|-.-+ .+. .+.|.+ +||..|...+ ..||-|...+.++
T Consensus 4 lrpnCE~C~~dLp~~s~~A~ICSfECTFC~~C~e~~l~~~CPNCgGelv~R 54 (57)
T PF06906_consen 4 LRPNCECCDKDLPPDSPEAYICSFECTFCADCAETMLNGVCPNCGGELVRR 54 (57)
T ss_pred cCCCccccCCCCCCCCCcceEEeEeCcccHHHHHHHhcCcCcCCCCccccC
Confidence 344555555433 222 445775 6999999987 5899998887654
No 232
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=39.44 E-value=18 Score=28.48 Aligned_cols=20 Identities=30% Similarity=0.612 Sum_probs=15.5
Q ss_pred CCccchHHHhcC-------------CCCCCCcc
Q psy7970 262 GHGTCQMCGDRM-------------SECPICRK 281 (290)
Q Consensus 262 GH~fC~~C~~~~-------------~~CP~CR~ 281 (290)
.-.||..|+... |.||.||.
T Consensus 37 ~~~fC~~CL~~ryge~~~ev~~~~~W~CP~Crg 69 (105)
T PF10497_consen 37 RGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRG 69 (105)
T ss_pred cceehHhHHHHHHhhhHHHHhcCCceECCCCCC
Confidence 556999997632 68999987
No 233
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=39.14 E-value=19 Score=34.71 Aligned_cols=44 Identities=27% Similarity=0.613 Sum_probs=30.7
Q ss_pred cCCCcccccccccccccc--ccC----Cc-----------------cchHHHhcCC-----------------CCCCCcc
Q psy7970 242 KEQTMCPVCLDRLKNMIF--LCG----HG-----------------TCQMCGDRMS-----------------ECPICRK 281 (290)
Q Consensus 242 ~e~~~C~IC~~~~~~~v~--~CG----H~-----------------fC~~C~~~~~-----------------~CP~CR~ 281 (290)
+|...|--|+....|.-+ .|. |. -|.+|+-+|+ .||+||+
T Consensus 269 ~e~e~CigC~~~~~~vkl~k~C~~~~~~g~~~~~~~~C~~C~CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa 348 (358)
T PF10272_consen 269 QELEPCIGCMQAQPNVKLVKRCADEEQEGSPLPNEPPCQQCYCRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRA 348 (358)
T ss_pred cccCCccccccCCCCcEEEeccCCcccCCcccccCCCCccccccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcc
Confidence 455788889987777633 373 11 3778887762 5999999
Q ss_pred cccc
Q psy7970 282 AVEK 285 (290)
Q Consensus 282 ~i~~ 285 (290)
+|.-
T Consensus 349 ~FCi 352 (358)
T PF10272_consen 349 KFCI 352 (358)
T ss_pred ccee
Confidence 9854
No 234
>KOG0502|consensus
Probab=38.19 E-value=38 Score=30.74 Aligned_cols=43 Identities=21% Similarity=0.245 Sum_probs=29.5
Q ss_pred HHHHHHHhCCCCCcccccCCCCCCCCCCCchhHHHHHhhhhcc
Q psy7970 15 SIACFLAGNGADLSIKNKKGQTPLDLCPDPNLCKALTKCYKDK 57 (290)
Q Consensus 15 aiacfL~~~Gadl~~~n~~g~tpldl~~d~~~~~~l~~~~~~~ 57 (290)
-|.=.|+..|-|+|+.|-+|-|||-++.-.+..+.+..+++..
T Consensus 207 diV~lLL~r~vdVNvyDwNGgTpLlyAvrgnhvkcve~Ll~sG 249 (296)
T KOG0502|consen 207 DIVELLLTREVDVNVYDWNGGTPLLYAVRGNHVKCVESLLNSG 249 (296)
T ss_pred HHHHHHHhcCCCcceeccCCCceeeeeecCChHHHHHHHHhcC
Confidence 3444666777777777777777777777777777777666543
No 235
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=38.08 E-value=17 Score=30.02 Aligned_cols=45 Identities=27% Similarity=0.597 Sum_probs=35.6
Q ss_pred cccccccccccCCceEEeC----CCCeecchhhHhcC-------CCCCCCCcccccc
Q psy7970 124 KIEECMVCSLKKASVLFKP----CYHMVACESCASLM-------KKCVQCRTQIDHM 169 (290)
Q Consensus 124 ~i~~C~~C~~~~~~~~~~P----CgH~~~C~~Ca~~~-------~~Cp~Cr~~i~~~ 169 (290)
++|+|-+|.+..++-.|+. ||-. .|-.|-..+ -+||.|+.+..+.
T Consensus 79 ~lYeCnIC~etS~ee~FLKPneCCgY~-iCn~Cya~LWK~~~~ypvCPvCkTSFKss 134 (140)
T PF05290_consen 79 KLYECNICKETSAEERFLKPNECCGYS-ICNACYANLWKFCNLYPVCPVCKTSFKSS 134 (140)
T ss_pred CceeccCcccccchhhcCCcccccchH-HHHHHHHHHHHHcccCCCCCccccccccc
Confidence 5799999999999988874 6755 888887654 4899999876543
No 236
>KOG1701|consensus
Probab=36.96 E-value=14 Score=36.16 Aligned_cols=87 Identities=25% Similarity=0.494 Sum_probs=55.2
Q ss_pred ccccccccCcceEeecCCCcccccchhhh-hccCCCCCCcchhhcc-----c-----cccccccccCCceEEeC-CCCee
Q psy7970 80 ECRICSDLKRDILFQPCGHVACCSVCAPR-VKKCLICREPVEKRIK-----I-----EECMVCSLKKASVLFKP-CYHMV 147 (290)
Q Consensus 80 ~C~iC~~~~~~~~~~PCgH~~~C~~Ca~~-~~~Cp~Cr~~i~~~~~-----i-----~~C~~C~~~~~~~~~~P-CgH~~ 147 (290)
.|..|...-+-..|.==.-...|+.|... +.+|-.|...|.+++- . +-|++|......+-|.. -...+
T Consensus 304 tC~~C~r~L~Gq~FY~v~~k~~CE~cyq~tlekC~~Cg~~I~d~iLrA~GkayHp~CF~Cv~C~r~ldgipFtvd~~n~v 383 (468)
T KOG1701|consen 304 TCRTCRRQLAGQSFYQVDGKPYCEGCYQDTLEKCNKCGEPIMDRILRALGKAYHPGCFTCVVCARCLDGIPFTVDSQNNV 383 (468)
T ss_pred ehHhhhhhhccccccccCCcccchHHHHHHHHHHhhhhhHHHHHHHHhcccccCCCceEEEEeccccCCccccccCCCce
Confidence 44445444444444433444467777765 5899999999987663 2 46777766655555554 33445
Q ss_pred cchhhHhcC--CCCCCCCccc
Q psy7970 148 ACESCASLM--KKCVQCRTQI 166 (290)
Q Consensus 148 ~C~~Ca~~~--~~Cp~Cr~~i 166 (290)
.|..+.-+- -+|.+|..+|
T Consensus 384 ~Cv~dfh~kfAPrCs~C~~PI 404 (468)
T KOG1701|consen 384 YCVPDFHKKFAPRCSVCGNPI 404 (468)
T ss_pred eeehhhhhhcCcchhhccCCc
Confidence 666666443 4899999886
No 237
>KOG0502|consensus
Probab=36.13 E-value=17 Score=32.84 Aligned_cols=47 Identities=19% Similarity=0.230 Sum_probs=38.7
Q ss_pred chhHHHHHHHHHhCCCCCcccccCCCCCCCCCCCchhHHHHHhhhhc
Q psy7970 10 KKSSASIACFLAGNGADLSIKNKKGQTPLDLCPDPNLCKALTKCYKD 56 (290)
Q Consensus 10 ~~~~~aiacfL~~~Gadl~~~n~~g~tpldl~~d~~~~~~l~~~~~~ 56 (290)
.+..+.+.-||++.|||+.+.-+-.-+.|.|+.-.+.-+.+.-++.+
T Consensus 169 a~G~i~vV~fLL~~GAdp~~lgk~resALsLAt~ggytdiV~lLL~r 215 (296)
T KOG0502|consen 169 AKGHIPVVQFLLNSGADPDALGKYRESALSLATRGGYTDIVELLLTR 215 (296)
T ss_pred hcCchHHHHHHHHcCCChhhhhhhhhhhHhHHhcCChHHHHHHHHhc
Confidence 34556889999999999999888888999999888888877666644
No 238
>KOG1815|consensus
Probab=35.93 E-value=19 Score=35.57 Aligned_cols=32 Identities=31% Similarity=0.758 Sum_probs=25.9
Q ss_pred cCCCccccccccccc-cccc-cCCccchHHHhcC
Q psy7970 242 KEQTMCPVCLDRLKN-MIFL-CGHGTCQMCGDRM 273 (290)
Q Consensus 242 ~e~~~C~IC~~~~~~-~v~~-CGH~fC~~C~~~~ 273 (290)
.....|.||.+.+.. .++. |||.||..|+...
T Consensus 68 ~~~~~c~ic~~~~~~~~~~~~c~H~~c~~cw~~y 101 (444)
T KOG1815|consen 68 KGDVQCGICVESYDGEIIGLGCGHPFCPPCWTGY 101 (444)
T ss_pred CccccCCcccCCCcchhhhcCCCcHHHHHHHHHH
Confidence 345899999999986 4444 9999999999853
No 239
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=35.39 E-value=17 Score=24.70 Aligned_cols=41 Identities=34% Similarity=0.721 Sum_probs=20.9
Q ss_pred ccccccccccccccccC-CccchHHHhcCC----CCCCCcccccccc
Q psy7970 246 MCPVCLDRLKNMIFLCG-HGTCQMCGDRMS----ECPICRKAVEKRI 287 (290)
Q Consensus 246 ~C~IC~~~~~~~v~~CG-H~fC~~C~~~~~----~CP~CR~~i~~~~ 287 (290)
.|.-|+-..++ .+.|. |..|..|+..+. .||+|.+++..++
T Consensus 4 nCKsCWf~~k~-Li~C~dHYLCl~CLt~ml~~s~~C~iC~~~LPtki 49 (50)
T PF03854_consen 4 NCKSCWFANKG-LIKCSDHYLCLNCLTLMLSRSDRCPICGKPLPTKI 49 (50)
T ss_dssp ---SS-S--SS-EEE-SS-EEEHHHHHHT-SSSSEETTTTEE----S
T ss_pred cChhhhhcCCC-eeeecchhHHHHHHHHHhccccCCCcccCcCcccc
Confidence 45556544443 23466 779999999773 6999999887654
No 240
>KOG0801|consensus
Probab=35.36 E-value=21 Score=30.59 Aligned_cols=19 Identities=26% Similarity=0.735 Sum_probs=13.2
Q ss_pred ccccccccc---CCceEEeCCC
Q psy7970 126 EECMVCSLK---KASVLFKPCY 144 (290)
Q Consensus 126 ~~C~~C~~~---~~~~~~~PCg 144 (290)
.+|+||++. ..++..+||-
T Consensus 178 GECvICLEdL~~GdtIARLPCL 199 (205)
T KOG0801|consen 178 GECVICLEDLEAGDTIARLPCL 199 (205)
T ss_pred CcEEEEhhhccCCCceeccceE
Confidence 599999763 4556667773
No 241
>KOG2034|consensus
Probab=34.61 E-value=16 Score=38.94 Aligned_cols=45 Identities=31% Similarity=0.510 Sum_probs=36.1
Q ss_pred hhHHHHHHHHHHhccCCCccccccccccc-c--ccccCCccchHHHhc
Q psy7970 228 TSDIQKLQQQLQDIKEQTMCPVCLDRLKN-M--IFLCGHGTCQMCGDR 272 (290)
Q Consensus 228 ~~~~~~l~~~~~~l~e~~~C~IC~~~~~~-~--v~~CGH~fC~~C~~~ 272 (290)
..+++++.+....++.+-.|-+|...+-. | +|+|||.|=+.|+.+
T Consensus 801 ~~~~~~l~~ry~v~ep~d~C~~C~~~ll~~pF~vf~CgH~FH~~Cl~~ 848 (911)
T KOG2034|consen 801 RTEISKLRQRYRVLEPQDSCDHCGRPLLIKPFYVFPCGHCFHRDCLIR 848 (911)
T ss_pred HhHHHHhhcceEEecCccchHHhcchhhcCcceeeeccchHHHHHHHH
Confidence 45566777777788999999999985544 4 667999999999984
No 242
>KOG0522|consensus
Probab=34.13 E-value=17 Score=36.50 Aligned_cols=25 Identities=48% Similarity=0.666 Sum_probs=23.1
Q ss_pred HHHHHhCCCCCcccccCCCCCCCCC
Q psy7970 17 ACFLAGNGADLSIKNKKGQTPLDLC 41 (290)
Q Consensus 17 acfL~~~Gadl~~~n~~g~tpldl~ 41 (290)
|-.|+++|||+.++|+.|.+||..+
T Consensus 71 a~~Ll~a~Adv~~kN~~gWs~L~EA 95 (560)
T KOG0522|consen 71 ARILLSAGADVSIKNNEGWSPLHEA 95 (560)
T ss_pred HHHHHhcCCCccccccccccHHHHH
Confidence 5578999999999999999999988
No 243
>KOG3800|consensus
Probab=32.52 E-value=24 Score=32.94 Aligned_cols=24 Identities=33% Similarity=0.891 Sum_probs=19.0
Q ss_pred cCCCcccccchhhhh-----ccCCCCCCcc
Q psy7970 95 PCGHVACCSVCAPRV-----KKCLICREPV 119 (290)
Q Consensus 95 PCgH~~~C~~Ca~~~-----~~Cp~Cr~~i 119 (290)
||||. .|.+|..++ ..||.|....
T Consensus 22 ~C~H~-lCEsCvd~iF~~g~~~CpeC~~iL 50 (300)
T KOG3800|consen 22 ECGHR-LCESCVDRIFSLGPAQCPECMVIL 50 (300)
T ss_pred cccch-HHHHHHHHHHhcCCCCCCcccchh
Confidence 99999 599999987 4777776543
No 244
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=31.71 E-value=32 Score=35.73 Aligned_cols=54 Identities=17% Similarity=0.456 Sum_probs=29.2
Q ss_pred ccCCCCCCcchhhccccccccccccCCceEEeCCCCeecchhhHhc----CCCCCCCCcccccccceee
Q psy7970 110 KKCLICREPVEKRIKIEECMVCSLKKASVLFKPCYHMVACESCASL----MKKCVQCRTQIDHMHPMVV 174 (290)
Q Consensus 110 ~~Cp~Cr~~i~~~~~i~~C~~C~~~~~~~~~~PCgH~~~C~~Ca~~----~~~Cp~Cr~~i~~~~~~~~ 174 (290)
..||-|...+...-+ .|..|..... +. .|..|... .+.||.|+.....+-..+|
T Consensus 2 ~~Cp~Cg~~n~~~ak--FC~~CG~~l~--------~~-~Cp~CG~~~~~~~~fC~~CG~~~~~~~~~~~ 59 (645)
T PRK14559 2 LICPQCQFENPNNNR--FCQKCGTSLT--------HK-PCPQCGTEVPVDEAHCPNCGAETGTIWWAII 59 (645)
T ss_pred CcCCCCCCcCCCCCc--cccccCCCCC--------CC-cCCCCCCCCCcccccccccCCcccchhhhhc
Confidence 345555555443332 4555544321 11 45666643 4689999988777654433
No 245
>KOG3676|consensus
Probab=30.85 E-value=31 Score=36.35 Aligned_cols=41 Identities=20% Similarity=0.274 Sum_probs=34.3
Q ss_pred HHHHHHhCCCC--CcccccCCCCCCCCCCCchhHHHHHhhhhc
Q psy7970 16 IACFLAGNGAD--LSIKNKKGQTPLDLCPDPNLCKALTKCYKD 56 (290)
Q Consensus 16 iacfL~~~Gad--l~~~n~~g~tpldl~~d~~~~~~l~~~~~~ 56 (290)
+-=.++..||+ ..++|+.|-|||.|++--.-....+...++
T Consensus 288 My~~~L~~ga~~l~~v~N~qgLTPLtLAaklGk~emf~~ile~ 330 (782)
T KOG3676|consen 288 MYDLALELGANALEHVRNNQGLTPLTLAAKLGKKEMFQHILER 330 (782)
T ss_pred HHHHHHhcCCCccccccccCCCChHHHHHHhhhHHHHHHHHHh
Confidence 33457788999 899999999999999888877778887776
No 246
>KOG4739|consensus
Probab=30.58 E-value=20 Score=32.40 Aligned_cols=30 Identities=23% Similarity=0.781 Sum_probs=23.0
Q ss_pred ceEeecCCCcccccchhhhh--ccCCCCCCcch
Q psy7970 90 DILFQPCGHVACCSVCAPRV--KKCLICREPVE 120 (290)
Q Consensus 90 ~~~~~PCgH~~~C~~Ca~~~--~~Cp~Cr~~i~ 120 (290)
.-.|.-|+|+. |..|..-- ..||+|+.+|.
T Consensus 17 ~f~LTaC~Hvf-C~~C~k~~~~~~C~lCkk~ir 48 (233)
T KOG4739|consen 17 PFFLTACRHVF-CEPCLKASSPDVCPLCKKSIR 48 (233)
T ss_pred ceeeeechhhh-hhhhcccCCccccccccceee
Confidence 34456899994 99998754 48999999854
No 247
>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=28.54 E-value=27 Score=21.67 Aligned_cols=14 Identities=21% Similarity=0.494 Sum_probs=9.9
Q ss_pred cCCCCCCCCccccc
Q psy7970 155 LMKKCVQCRTQIDH 168 (290)
Q Consensus 155 ~~~~Cp~Cr~~i~~ 168 (290)
.+..||.|+.+-+.
T Consensus 17 ~p~~CP~Cg~~~~~ 30 (34)
T cd00729 17 APEKCPICGAPKEK 30 (34)
T ss_pred CCCcCcCCCCchHH
Confidence 35789999876443
No 248
>KOG2660|consensus
Probab=28.54 E-value=15 Score=34.75 Aligned_cols=29 Identities=38% Similarity=0.870 Sum_probs=23.1
Q ss_pred CCCeecchhhHh----cCCCCCCCCcccccccce
Q psy7970 143 CYHMVACESCAS----LMKKCVQCRTQIDHMHPM 172 (290)
Q Consensus 143 CgH~~~C~~Ca~----~~~~Cp~Cr~~i~~~~~~ 172 (290)
|-|. +|..|.. ..+.||.|+..|-+..+.
T Consensus 34 CLHT-FCkSCivk~l~~~~~CP~C~i~ih~t~pl 66 (331)
T KOG2660|consen 34 CLHT-FCKSCIVKYLEESKYCPTCDIVIHKTHPL 66 (331)
T ss_pred HHHH-HHHHHHHHHHHHhccCCccceeccCcccc
Confidence 5577 9999994 468999999888776543
No 249
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=28.42 E-value=20 Score=25.39 Aligned_cols=31 Identities=23% Similarity=0.613 Sum_probs=15.9
Q ss_pred cCCCcccccccccccccc-----ccCCccchHHHhc
Q psy7970 242 KEQTMCPVCLDRLKNMIF-----LCGHGTCQMCGDR 272 (290)
Q Consensus 242 ~e~~~C~IC~~~~~~~v~-----~CGH~fC~~C~~~ 272 (290)
++...|.+|...|.-... .||+.||..|...
T Consensus 7 ~~~~~C~~C~~~F~~~~rrhhCr~CG~~vC~~Cs~~ 42 (69)
T PF01363_consen 7 SEASNCMICGKKFSLFRRRHHCRNCGRVVCSSCSSQ 42 (69)
T ss_dssp GG-SB-TTT--B-BSSS-EEE-TTT--EEECCCS-E
T ss_pred CCCCcCcCcCCcCCCceeeEccCCCCCEECCchhCC
Confidence 456889999998843321 2999999999763
No 250
>KOG0297|consensus
Probab=28.34 E-value=34 Score=33.27 Aligned_cols=43 Identities=23% Similarity=0.527 Sum_probs=32.4
Q ss_pred cccccccccCCceEE-eCCCCeecchhhHhc----CCCCCCCCcccccc
Q psy7970 126 EECMVCSLKKASVLF-KPCYHMVACESCASL----MKKCVQCRTQIDHM 169 (290)
Q Consensus 126 ~~C~~C~~~~~~~~~-~PCgH~~~C~~Ca~~----~~~Cp~Cr~~i~~~ 169 (290)
+.|.+|.....+.+- ..|||. +|..|... ...||.|+..+...
T Consensus 22 l~C~~C~~vl~~p~~~~~cgh~-fC~~C~~~~~~~~~~cp~~~~~~~~~ 69 (391)
T KOG0297|consen 22 LLCPICMSVLRDPVQTTTCGHR-FCAGCLLESLSNHQKCPVCRQELTQA 69 (391)
T ss_pred ccCccccccccCCCCCCCCCCc-ccccccchhhccCcCCcccccccchh
Confidence 567777776666666 489999 99999954 35899998776543
No 251
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=28.01 E-value=31 Score=23.21 Aligned_cols=35 Identities=29% Similarity=0.705 Sum_probs=22.2
Q ss_pred ccccccc--ccccccc-ccC-----CccchHHHhcCC------CCCCCc
Q psy7970 246 MCPVCLD--RLKNMIF-LCG-----HGTCQMCGDRMS------ECPICR 280 (290)
Q Consensus 246 ~C~IC~~--~~~~~v~-~CG-----H~fC~~C~~~~~------~CP~CR 280 (290)
.|.||++ ...++.+ +|. |.+=..|+.+|. .||+|.
T Consensus 1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 4889997 2333333 564 446667788772 699984
No 252
>PF03660 PHF5: PHF5-like protein; InterPro: IPR005345 Phf5 is a member of a novel murine multigene family that is highly conserved during evolution and belongs to the superfamily of PHD-finger proteins. At least one example, from Mus musculus (Mouse), may act as a chromatin-associated protein []. The Schizosaccharomyces pombe (Fission yeast) ini1 gene is essential, required for splicing []. It is localised in the nucleus, but not detected in the nucleolus and can be complemented by human ini1 []. The proteins of this family contain five CXXC motifs.; PDB: 2K0A_A.
Probab=27.71 E-value=52 Score=26.00 Aligned_cols=45 Identities=27% Similarity=0.579 Sum_probs=13.7
Q ss_pred cCCCCCCcchhhccc------------cccccccccCCceEEeCCCCeecchhhHhcC---CCCCC
Q psy7970 111 KCLICREPVEKRIKI------------EECMVCSLKKASVLFKPCYHMVACESCASLM---KKCVQ 161 (290)
Q Consensus 111 ~Cp~Cr~~i~~~~~i------------~~C~~C~~~~~~~~~~PCgH~~~C~~Ca~~~---~~Cp~ 161 (290)
+||+|-+.+.....+ ..|++|...+.... .-.|.+|...- ..||.
T Consensus 29 kCpiCDS~Vrp~~~VrICdeCs~G~~~~rCIiCg~~~g~sd------AYYC~eC~~lEKdRDGCPr 88 (106)
T PF03660_consen 29 KCPICDSYVRPCTKVRICDECSFGSLQGRCIICGSGPGVSD------AYYCWECVRLEKDRDGCPR 88 (106)
T ss_dssp --TTT-------EE-EEEHHHHTSSTTSB-TTTSSSB--EE-------EE-HHHHHHTSTTS----
T ss_pred cccccCCccCCcceEEECCcCCCCCcCceEEEecCCCCccc------ceehhhhHhhhccccCCce
Confidence 666666655544433 35666663333322 22778886543 36665
No 253
>KOG1428|consensus
Probab=27.67 E-value=51 Score=37.67 Aligned_cols=77 Identities=25% Similarity=0.550 Sum_probs=45.1
Q ss_pred EeecCCCcccccchhhhhccCCCCCCcchhhcccccccccccc---CCceEEeCCCCeecchhhHhc-------------
Q psy7970 92 LFQPCGHVACCSVCAPRVKKCLICREPVEKRIKIEECMVCSLK---KASVLFKPCYHMVACESCASL------------- 155 (290)
Q Consensus 92 ~~~PCgH~~~C~~Ca~~~~~Cp~Cr~~i~~~~~i~~C~~C~~~---~~~~~~~PCgH~~~C~~Ca~~------------- 155 (290)
+.-||||.+-=..=-...--|.-|...-+.----..|.+|... .+-++-+-|+|+ +=..|..+
T Consensus 3453 ~~H~C~H~CGGvkNEE~CLPCl~Cdks~tkQD~DDmCmICFTE~L~AAP~IqL~C~Hi-FHlqC~R~vLE~RW~GPRItF 3531 (3738)
T KOG1428|consen 3453 KTHPCGHPCGGVKNEEHCLPCLHCDKSATKQDADDMCMICFTEALSAAPAIQLDCSHI-FHLQCCRRVLENRWLGPRITF 3531 (3738)
T ss_pred ccCcCCCcccCccchhhcccccccChhhhhcccCceEEEEehhhhCCCcceecCCccc-hhHHHHHHHHHhcccCCeeEE
Confidence 4468999861000000012334444444422234689999653 445577899999 54666632
Q ss_pred -CCCCCCCCcccccc
Q psy7970 156 -MKKCVQCRTQIDHM 169 (290)
Q Consensus 156 -~~~Cp~Cr~~i~~~ 169 (290)
.-.||+|..+|.+.
T Consensus 3532 ~FisCPiC~n~InH~ 3546 (3738)
T KOG1428|consen 3532 GFISCPICKNKINHI 3546 (3738)
T ss_pred eeeecccccchhhhH
Confidence 24999999999875
No 254
>KOG0512|consensus
Probab=26.14 E-value=53 Score=28.77 Aligned_cols=40 Identities=25% Similarity=0.188 Sum_probs=31.0
Q ss_pred HHHHHHHhCCCCCcccccCCCCCCCCCCCchhHHHHHhhh
Q psy7970 15 SIACFLAGNGADLSIKNKKGQTPLDLCPDPNLCKALTKCY 54 (290)
Q Consensus 15 aiacfL~~~Gadl~~~n~~g~tpldl~~d~~~~~~l~~~~ 54 (290)
.|+--|++.||+.+.+-..|.|||.-+-.=+-..-.-.++
T Consensus 111 div~~ll~~gAn~~a~T~~GWTPLhSAckWnN~~va~~LL 150 (228)
T KOG0512|consen 111 DIVHELLLSGANKEAKTNEGWTPLHSACKWNNFEVAGRLL 150 (228)
T ss_pred HHHHHHHHccCCcccccccCccchhhhhcccchhHHHHHH
Confidence 7899999999999999999999999885444443333333
No 255
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=24.94 E-value=45 Score=32.99 Aligned_cols=23 Identities=4% Similarity=-0.138 Sum_probs=19.8
Q ss_pred hhHHHHHHHHHhCCCCCcccccC
Q psy7970 11 KSSASIACFLAGNGADLSIKNKK 33 (290)
Q Consensus 11 ~~~~aiacfL~~~Gadl~~~n~~ 33 (290)
+++.|.|.||.+.|+++.+.|.+
T Consensus 18 ~sG~~~~~~l~~~g~~v~~~d~~ 40 (468)
T PRK04690 18 REGRAAYRALRAHLPAQALTLFC 40 (468)
T ss_pred hhhHHHHHHHHHcCCEEEEEcCC
Confidence 48889999999999998877754
No 256
>KOG1705|consensus
Probab=24.85 E-value=26 Score=27.06 Aligned_cols=33 Identities=36% Similarity=0.946 Sum_probs=20.1
Q ss_pred CccccccccCcceEeecCCCcccccchhhhh--ccCCCCC
Q psy7970 79 DECRICSDLKRDILFQPCGHVACCSVCAPRV--KKCLICR 116 (290)
Q Consensus 79 ~~C~iC~~~~~~~~~~PCgH~~~C~~Ca~~~--~~Cp~Cr 116 (290)
..|+||-.+.+ ||.-+-.|.+|+-.- ..|-+|.
T Consensus 28 gkC~ICDS~VR-----P~tlVRiC~eC~~Gs~q~~ciic~ 62 (110)
T KOG1705|consen 28 GKCVICDSYVR-----PCTLVRICDECNYGSYQGRCVICG 62 (110)
T ss_pred Ccccccccccc-----cceeeeeehhcCCccccCceEEec
Confidence 56888866655 565566778877532 3444443
No 257
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=24.60 E-value=43 Score=33.30 Aligned_cols=30 Identities=30% Similarity=0.552 Sum_probs=23.3
Q ss_pred CCCCCCcccchhHHHHHHHHHhCCCCCcccccCCCC
Q psy7970 1 MGLGSQAADKKSSASIACFLAGNGADLSIKNKKGQT 36 (290)
Q Consensus 1 ~~~~~~~~~~~~~~aiacfL~~~Gadl~~~n~~g~t 36 (290)
+|||. ++.|+|.||.+.|+++...|.+-..
T Consensus 13 ~GLG~------sG~a~a~~L~~~G~~v~v~D~~~~~ 42 (448)
T COG0771 13 LGLGK------SGLAAARFLLKLGAEVTVSDDRPAP 42 (448)
T ss_pred Eeccc------ccHHHHHHHHHCCCeEEEEcCCCCc
Confidence 36764 5589999999999999887755444
No 258
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=24.59 E-value=67 Score=21.76 Aligned_cols=26 Identities=31% Similarity=0.795 Sum_probs=14.4
Q ss_pred HHHHHHHHHHhccCCC-cccccccccc
Q psy7970 230 DIQKLQQQLQDIKEQT-MCPVCLDRLK 255 (290)
Q Consensus 230 ~~~~l~~~~~~l~e~~-~C~IC~~~~~ 255 (290)
....++..+..+.+.. .||+|..-|.
T Consensus 5 ~~~~~~k~i~~l~~~~~~CPlC~r~l~ 31 (54)
T PF04423_consen 5 EIEELKKYIEELKEAKGCCPLCGRPLD 31 (54)
T ss_dssp HHHHHHHHHHHHTT-SEE-TTT--EE-
T ss_pred HHHHHHHHHHHHhcCCCcCCCCCCCCC
Confidence 3455666777776665 9999987654
No 259
>PF12773 DZR: Double zinc ribbon
Probab=24.38 E-value=68 Score=21.08 Aligned_cols=23 Identities=26% Similarity=0.677 Sum_probs=12.8
Q ss_pred CccchHHHhcCC-------CCCCCcccccc
Q psy7970 263 HGTCQMCGDRMS-------ECPICRKAVEK 285 (290)
Q Consensus 263 H~fC~~C~~~~~-------~CP~CR~~i~~ 285 (290)
-.||..|...+. .||.|...+..
T Consensus 12 ~~fC~~CG~~l~~~~~~~~~C~~Cg~~~~~ 41 (50)
T PF12773_consen 12 AKFCPHCGTPLPPPDQSKKICPNCGAENPP 41 (50)
T ss_pred ccCChhhcCChhhccCCCCCCcCCcCCCcC
Confidence 345555655443 47777666543
No 260
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=24.38 E-value=56 Score=22.44 Aligned_cols=19 Identities=32% Similarity=0.924 Sum_probs=11.8
Q ss_pred cCCccchHHHh----cCCCCCCC
Q psy7970 261 CGHGTCQMCGD----RMSECPIC 279 (290)
Q Consensus 261 CGH~fC~~C~~----~~~~CP~C 279 (290)
|++.||.+|-. .+..||-|
T Consensus 27 C~~~FC~dCD~fiHE~LH~CPGC 49 (51)
T PF07975_consen 27 CKNHFCIDCDVFIHETLHNCPGC 49 (51)
T ss_dssp TT--B-HHHHHTTTTTS-SSSTT
T ss_pred CCCccccCcChhhhccccCCcCC
Confidence 88999999965 23579988
No 261
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=23.92 E-value=45 Score=28.40 Aligned_cols=19 Identities=21% Similarity=0.550 Sum_probs=16.5
Q ss_pred CCccccccccCcceEeecC
Q psy7970 78 LDECRICSDLKRDILFQPC 96 (290)
Q Consensus 78 ~~~C~iC~~~~~~~~~~PC 96 (290)
+..|.||++.+-+.||+=|
T Consensus 2 d~~CpICme~PHNAVLLlC 20 (162)
T PF07800_consen 2 DVTCPICMEHPHNAVLLLC 20 (162)
T ss_pred CccCceeccCCCceEEEEe
Confidence 4579999999999999855
No 262
>KOG4177|consensus
Probab=23.12 E-value=65 Score=35.73 Aligned_cols=37 Identities=22% Similarity=0.441 Sum_probs=18.0
Q ss_pred HHHHHHHhCCCCCcccccCCCCCCCCCCCchhHHHHH
Q psy7970 15 SIACFLAGNGADLSIKNKKGQTPLDLCPDPNLCKALT 51 (290)
Q Consensus 15 aiacfL~~~Gadl~~~n~~g~tpldl~~d~~~~~~l~ 51 (290)
-|+-+|+++||++++.|-+|.||+..++-++..+...
T Consensus 256 ~i~~~l~~~ga~~~~~~vr~~tplh~AA~~~~~e~~~ 292 (1143)
T KOG4177|consen 256 DIVKLLLQHGASVNVSTVRGETPLHMAARAGQVEVCK 292 (1143)
T ss_pred hHHHHHHhcccccCcccccccCcchhhhccchhhhHh
Confidence 3444555555555555555555555554444444333
No 263
>KOG3799|consensus
Probab=22.84 E-value=52 Score=27.34 Aligned_cols=41 Identities=32% Similarity=0.783 Sum_probs=26.5
Q ss_pred ccCCCccccccccccccccccCC-------ccchHHHhcC--------CCCCCCcccc
Q psy7970 241 IKEQTMCPVCLDRLKNMIFLCGH-------GTCQMCGDRM--------SECPICRKAV 283 (290)
Q Consensus 241 l~e~~~C~IC~~~~~~~v~~CGH-------~fC~~C~~~~--------~~CP~CR~~i 283 (290)
..++.+|-||+..-..- -||| .||..|.-+. |.|-.||+..
T Consensus 62 v~ddatC~IC~KTKFAD--G~GH~C~YCq~r~CARCGGrv~lrsNKv~wvcnlc~k~q 117 (169)
T KOG3799|consen 62 VGDDATCGICHKTKFAD--GCGHNCSYCQTRFCARCGGRVSLRSNKVMWVCNLCRKQQ 117 (169)
T ss_pred cCcCcchhhhhhccccc--ccCcccchhhhhHHHhcCCeeeeccCceEEeccCCcHHH
Confidence 36789999998633221 1565 3666676543 6788888753
No 264
>PF10217 DUF2039: Uncharacterized conserved protein (DUF2039); InterPro: IPR019351 This entry is a region of approximately 100 residues containing three pairs of cysteine residues. The region is conserved from plants to humans but its function is unknown.
Probab=22.76 E-value=36 Score=26.34 Aligned_cols=37 Identities=30% Similarity=0.751 Sum_probs=28.1
Q ss_pred ccccccccccCCceEEeCCCCeecchhhHhcCCCCCCCCccc
Q psy7970 125 IEECMVCSLKKASVLFKPCYHMVACESCASLMKKCVQCRTQI 166 (290)
Q Consensus 125 i~~C~~C~~~~~~~~~~PCgH~~~C~~Ca~~~~~Cp~Cr~~i 166 (290)
...|..|......-. -|. .|..||.....|+.|..+-
T Consensus 55 p~kC~~C~qktVk~A----Yh~-iC~~Ca~~~~vCaKC~k~~ 91 (92)
T PF10217_consen 55 PKKCNKCQQKTVKHA----YHV-ICDPCAKELKVCAKCGKPP 91 (92)
T ss_pred CccccccccchHHHH----HHH-HHHHHHHhhccCcccCCCC
Confidence 568888887644332 244 9999999999999999763
No 265
>KOG0507|consensus
Probab=22.58 E-value=39 Score=35.63 Aligned_cols=33 Identities=27% Similarity=0.387 Sum_probs=29.2
Q ss_pred hhHHHHHHHHHhCCCCCcccccCCCCCCCCCCC
Q psy7970 11 KSSASIACFLAGNGADLSIKNKKGQTPLDLCPD 43 (290)
Q Consensus 11 ~~~~aiacfL~~~Gadl~~~n~~g~tpldl~~d 43 (290)
....++.-+|++.|||.=++|.+++|+||++..
T Consensus 125 hgh~dvv~~Ll~~~adp~i~nns~~t~ldlA~q 157 (854)
T KOG0507|consen 125 HGHLEVVFYLLKKNADPFIRNNSKETVLDLASR 157 (854)
T ss_pred hcchHHHHHHHhcCCCccccCcccccHHHHHHH
Confidence 445688999999999999999999999999843
No 266
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=21.85 E-value=47 Score=32.38 Aligned_cols=23 Identities=22% Similarity=0.452 Sum_probs=19.5
Q ss_pred hHHHHHHHHHhCCCCCcccccCC
Q psy7970 12 SSASIACFLAGNGADLSIKNKKG 34 (290)
Q Consensus 12 ~~~aiacfL~~~Gadl~~~n~~g 34 (290)
++.|+|.||.+.|+++...|.+.
T Consensus 17 sG~s~a~~L~~~G~~v~~~D~~~ 39 (448)
T PRK03803 17 TGLSVVRFLARQGIPFAVMDSRE 39 (448)
T ss_pred hHHHHHHHHHhCCCeEEEEeCCC
Confidence 67789999999999998877543
No 267
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=21.53 E-value=41 Score=32.38 Aligned_cols=20 Identities=15% Similarity=0.331 Sum_probs=16.8
Q ss_pred CCCCCccccccccCcceEee
Q psy7970 75 MVTLDECRICSDLKRDILFQ 94 (290)
Q Consensus 75 ~~~~~~C~iC~~~~~~~~~~ 94 (290)
..+.+.|+=|+..+.++.+.
T Consensus 268 ~~e~e~CigC~~~~~~vkl~ 287 (358)
T PF10272_consen 268 GQELEPCIGCMQAQPNVKLV 287 (358)
T ss_pred ccccCCccccccCCCCcEEE
Confidence 35667899999999999986
No 268
>KOG0782|consensus
Probab=21.45 E-value=59 Score=33.37 Aligned_cols=39 Identities=31% Similarity=0.507 Sum_probs=32.3
Q ss_pred HHHHHHHhCCCCCcccccCCCCCCCCC---CCchhHHHHHhh
Q psy7970 15 SIACFLAGNGADLSIKNKKGQTPLDLC---PDPNLCKALTKC 53 (290)
Q Consensus 15 aiacfL~~~Gadl~~~n~~g~tpldl~---~d~~~~~~l~~~ 53 (290)
||--+|+.+||.|.-.|.+|+||-.-+ .||.+...|.+-
T Consensus 948 ~vc~~lvdagasl~ktd~kg~tp~eraqqa~d~dlaayle~r 989 (1004)
T KOG0782|consen 948 AVCQLLVDAGASLRKTDSKGKTPQERAQQAGDPDLAAYLESR 989 (1004)
T ss_pred HHHHHHHhcchhheecccCCCChHHHHHhcCCchHHHHHhhh
Confidence 778899999999999999999998765 677777666543
No 269
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=21.41 E-value=1.3e+02 Score=21.50 Aligned_cols=45 Identities=20% Similarity=0.266 Sum_probs=34.4
Q ss_pred hhHHHHHHHHHhCCCCCcccccCCCCCCCCCCCchhHHHHHhhhhcc
Q psy7970 11 KSSASIACFLAGNGADLSIKNKKGQTPLDLCPDPNLCKALTKCYKDK 57 (290)
Q Consensus 11 ~~~~aiacfL~~~Gadl~~~n~~g~tpldl~~d~~~~~~l~~~~~~~ 57 (290)
.++.-+|.+|+..|.++++..+... ++ ...|+.+.+.+.+..++.
T Consensus 9 ~ig~E~A~~l~~~g~~vtli~~~~~-~~-~~~~~~~~~~~~~~l~~~ 53 (80)
T PF00070_consen 9 FIGIELAEALAELGKEVTLIERSDR-LL-PGFDPDAAKILEEYLRKR 53 (80)
T ss_dssp HHHHHHHHHHHHTTSEEEEEESSSS-SS-TTSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCcEEEEEeccch-hh-hhcCHHHHHHHHHHHHHC
Confidence 4677899999999999988666554 55 667888888877766543
No 270
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=21.33 E-value=64 Score=21.65 Aligned_cols=29 Identities=21% Similarity=0.412 Sum_probs=19.9
Q ss_pred Cccccccccccccc-----cccCCccchHHHhcC
Q psy7970 245 TMCPVCLDRLKNMI-----FLCGHGTCQMCGDRM 273 (290)
Q Consensus 245 ~~C~IC~~~~~~~v-----~~CGH~fC~~C~~~~ 273 (290)
..|++|...|.-.. ..||+.||..|....
T Consensus 3 ~~C~~C~~~F~~~~rk~~Cr~Cg~~~C~~C~~~~ 36 (57)
T cd00065 3 SSCMGCGKPFTLTRRRHHCRNCGRIFCSKCSSNR 36 (57)
T ss_pred CcCcccCccccCCccccccCcCcCCcChHHcCCe
Confidence 46777876554432 139999999998754
No 271
>KOG0520|consensus
Probab=21.31 E-value=63 Score=35.10 Aligned_cols=35 Identities=20% Similarity=0.312 Sum_probs=30.0
Q ss_pred hCCCCCcccccCCCCCCCCCCCchhHHHHHhhhhc
Q psy7970 22 GNGADLSIKNKKGQTPLDLCPDPNLCKALTKCYKD 56 (290)
Q Consensus 22 ~~Gadl~~~n~~g~tpldl~~d~~~~~~l~~~~~~ 56 (290)
.+|..++++|.+|+|||+|++.-...+++..+..-
T Consensus 629 ~~~~ai~i~D~~G~tpL~wAa~~G~e~l~a~l~~l 663 (975)
T KOG0520|consen 629 ADGVAIDIRDRNGWTPLHWAAFRGREKLVASLIEL 663 (975)
T ss_pred ecccccccccCCCCcccchHhhcCHHHHHHHHHHh
Confidence 57889999999999999999999888877777643
No 272
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=20.89 E-value=25 Score=23.86 Aligned_cols=10 Identities=30% Similarity=0.733 Sum_probs=7.1
Q ss_pred CCcccccccc
Q psy7970 244 QTMCPVCLDR 253 (290)
Q Consensus 244 ~~~C~IC~~~ 253 (290)
.+.||.|...
T Consensus 2 ~f~CP~C~~~ 11 (54)
T PF05605_consen 2 SFTCPYCGKG 11 (54)
T ss_pred CcCCCCCCCc
Confidence 4678888873
No 273
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=20.89 E-value=46 Score=32.22 Aligned_cols=22 Identities=27% Similarity=0.563 Sum_probs=19.2
Q ss_pred hHHHHHHHHHhCCCCCcccccC
Q psy7970 12 SSASIACFLAGNGADLSIKNKK 33 (290)
Q Consensus 12 ~~~aiacfL~~~Gadl~~~n~~ 33 (290)
++.|+|.||.+.|+.++..|.+
T Consensus 10 ~G~a~a~~l~~~G~~V~~sD~~ 31 (433)
T TIGR01087 10 TGRAVARFLHKKGAEVTVTDLK 31 (433)
T ss_pred hHHHHHHHHHHCCCEEEEEeCC
Confidence 6779999999999999887754
No 274
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=20.72 E-value=50 Score=32.41 Aligned_cols=22 Identities=27% Similarity=0.160 Sum_probs=18.7
Q ss_pred hHHH-HHHHHHhCCCCCcccccC
Q psy7970 12 SSAS-IACFLAGNGADLSIKNKK 33 (290)
Q Consensus 12 ~~~a-iacfL~~~Gadl~~~n~~ 33 (290)
++.| +|.||.+.|+++...|.+
T Consensus 18 sG~s~~a~~L~~~G~~V~~~D~~ 40 (461)
T PRK00421 18 IGMSGLAEVLLNLGYKVSGSDLK 40 (461)
T ss_pred hhHHHHHHHHHhCCCeEEEECCC
Confidence 6677 899999999999887764
No 275
>TIGR02114 coaB_strep phosphopantothenate--cysteine ligase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the C-terminal region of TIGR00521, corresponding to phosphopantothenate--cysteine ligase activity.
Probab=20.40 E-value=1.2e+02 Score=27.03 Aligned_cols=27 Identities=7% Similarity=0.148 Sum_probs=23.3
Q ss_pred CCcccchhHHHHHHHHHhCCCCCcccc
Q psy7970 5 SQAADKKSSASIACFLAGNGADLSIKN 31 (290)
Q Consensus 5 ~~~~~~~~~~aiacfL~~~Gadl~~~n 31 (290)
|+.+....|.|||-.|++.||++.+.+
T Consensus 20 tN~SSGgIG~AIA~~la~~Ga~Vvlv~ 46 (227)
T TIGR02114 20 TNHSTGHLGKIITETFLSAGHEVTLVT 46 (227)
T ss_pred cCCcccHHHHHHHHHHHHCCCEEEEEc
Confidence 566777899999999999999998754
No 276
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=20.38 E-value=77 Score=23.78 Aligned_cols=43 Identities=23% Similarity=0.753 Sum_probs=16.5
Q ss_pred CCCcccccccccccc----ccc----cCCccchHHHh-----cCCCCCCCcccccc
Q psy7970 243 EQTMCPVCLDRLKNM----IFL----CGHGTCQMCGD-----RMSECPICRKAVEK 285 (290)
Q Consensus 243 e~~~C~IC~~~~~~~----v~~----CGH~fC~~C~~-----~~~~CP~CR~~i~~ 285 (290)
....|.||-|..--. +|. |+.-.|+.|.. ....||.|+....+
T Consensus 8 ~~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~ykr 63 (80)
T PF14569_consen 8 NGQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRYKR 63 (80)
T ss_dssp SS-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B---
T ss_pred CCcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCccc
Confidence 346899998865332 552 78889999987 23589999876643
Done!