RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy7970
(290 letters)
>gnl|CDD|222454 pfam13920, zf-C3HC4_3, Zinc finger, C3HC4 type (RING finger).
Length = 49
Score = 47.8 bits (114), Expect = 7e-08
Identities = 22/47 (46%), Positives = 30/47 (63%), Gaps = 3/47 (6%)
Query: 79 DECRICSDLKRDILFQPCGHVACCSVCAPRV---KKCLICREPVEKR 122
D C IC + R+++F PCGH+ C CA R+ KKC ICR+P+E
Sbjct: 3 DLCVICLERPRNVVFLPCGHLCLCEECAKRLRSKKKCPICRQPIESV 49
Score = 39.7 bits (93), Expect = 5e-05
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
Query: 126 EECMVCSLKKASVLFKPCYHMVACESCASLM---KKCVQCRTQIDHM 169
+ C++C + +V+F PC H+ CE CA + KKC CR I+ +
Sbjct: 3 DLCVICLERPRNVVFLPCGHLCLCEECAKRLRSKKKCPICRQPIESV 49
Score = 39.7 bits (93), Expect = 6e-05
Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 5/49 (10%)
Query: 243 EQTMCPVCLDRLKNMIFL-CGH-GTCQMCGDRM---SECPICRKAVEKR 286
E +C +CL+R +N++FL CGH C+ C R+ +CPICR+ +E
Sbjct: 1 EDDLCVICLERPRNVVFLPCGHLCLCEECAKRLRSKKKCPICRQPIESV 49
>gnl|CDD|206094 pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RING finger).
Length = 45
Score = 34.4 bits (79), Expect = 0.004
Identities = 20/45 (44%), Positives = 27/45 (60%), Gaps = 6/45 (13%)
Query: 243 EQTMCPVCLDRLKNMIFL--CGHGTCQMCGDRM----SECPICRK 281
E+ CP+CLD L++ + L CGH C+ C R S+CPICR
Sbjct: 1 EELECPICLDLLRDPVVLTPCGHVFCRECILRYLKKKSKCPICRT 45
Score = 27.8 bits (62), Expect = 0.81
Identities = 21/44 (47%), Positives = 22/44 (50%), Gaps = 6/44 (13%)
Query: 79 DECRICSDLKRDILFQ-PCGHVACCSVCAPRV----KKCLICRE 117
EC IC DL RD + PCGHV C C R KC ICR
Sbjct: 3 LECPICLDLLRDPVVLTPCGHV-FCRECILRYLKKKSKCPICRT 45
>gnl|CDD|238093 cd00162, RING, RING-finger (Really Interesting New Gene) domain, a
specialized type of Zn-finger of 40 to 60 residues that
binds two atoms of zinc; defined by the 'cross-brace'
motif C-X2-C-X(9-39)-C-X(1-3)-
H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved
in mediating protein-protein interactions; identified in
a proteins with a wide range of functions such as viral
replication, signal transduction, and development; has
two variants, the C3HC4-type and a C3H2C3-type (RING-H2
finger), which have different cysteine/histidine
pattern; a subset of RINGs are associated with B-Boxes
(C-X2-H-X7-C-X7-C-X2-C-H-X2-H).
Length = 45
Score = 32.8 bits (75), Expect = 0.013
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 7/45 (15%)
Query: 246 MCPVCLDRLKNMIFL--CGHGTCQMCGDRM-----SECPICRKAV 283
CP+CL+ + + L CGH C+ C D+ + CP+CR +
Sbjct: 1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI 45
Score = 26.6 bits (59), Expect = 2.3
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 5/45 (11%)
Query: 80 ECRIC-SDLKRDILFQPCGHVACCS----VCAPRVKKCLICREPV 119
EC IC + + ++ PCGHV C S C +CR P+
Sbjct: 1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI 45
>gnl|CDD|227568 COG5243, HRD1, HRD ubiquitin ligase complex, ER membrane component
[Posttranslational modification, protein turnover,
chaperones].
Length = 491
Score = 33.0 bits (75), Expect = 0.16
Identities = 21/82 (25%), Positives = 28/82 (34%), Gaps = 12/82 (14%)
Query: 46 LCKALTKCYKDKEVDQIEPRVGEGDGT-----EDMVTLDECRICSDLKRDILFQPCGHV- 99
K L Y +Q+ D T ++M D + L PCGH+
Sbjct: 267 ATKDLNAMYPTATEEQL----TNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHIL 322
Query: 100 --ACCSVCAPRVKKCLICREPV 119
C R + C ICR PV
Sbjct: 323 HLHCLKNWLERQQTCPICRRPV 344
>gnl|CDD|221268 pfam11853, DUF3373, Protein of unknown function (DUF3373). This
family of proteins are functionally uncharacterized.
This protein is found in bacteria. Proteins in this
family are typically between 472 to 574 amino acids in
length.
Length = 485
Score = 32.9 bits (75), Expect = 0.17
Identities = 6/33 (18%), Positives = 14/33 (42%)
Query: 212 ASTSGALMNNGSRDTSTSDIQKLQQQLQDIKEQ 244
+ S + I+ L+++L ++K Q
Sbjct: 14 LALSLPAAAAAADIDLLQKIEALKKELAELKAQ 46
>gnl|CDD|129661 TIGR00570, cdk7, CDK-activating kinase assembly factor MAT1. All
proteins in this family for which functions are known
are cyclin dependent protein kinases that are components
of TFIIH, a complex that is involved in nucleotide
excision repair and transcription initiation. Also known
as MAT1 (menage a trois 1). This family is based on the
phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis,
Stanford University) [DNA metabolism, DNA replication,
recombination, and repair].
Length = 309
Score = 32.5 bits (74), Expect = 0.25
Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 11/54 (20%)
Query: 243 EQTMCPVC-LDR-----LKNMIFLCGHGTCQMCGDRM-----SECPICRKAVEK 285
+ CP C + LK M+ +CGH C+ C D + CP C + K
Sbjct: 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGSGSCPECDTPLRK 55
>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies).
Length = 56
Score = 29.2 bits (66), Expect = 0.29
Identities = 10/31 (32%), Positives = 17/31 (54%)
Query: 10 KKSSASIACFLAGNGADLSIKNKKGQTPLDL 40
K + + +L G DL++++ G T LDL
Sbjct: 25 KYGALELVQWLLKPGVDLNLRDSDGLTALDL 55
>gnl|CDD|227719 COG5432, RAD18, RING-finger-containing E3 ubiquitin ligase [Signal
transduction mechanisms].
Length = 391
Score = 32.0 bits (72), Expect = 0.34
Identities = 15/46 (32%), Positives = 19/46 (41%), Gaps = 5/46 (10%)
Query: 77 TLDECRICSDLKRDILFQPCGHVACCSVCAPRVKK----CLICREP 118
++ CRIC CGH CS+C R C +CRE
Sbjct: 24 SMLRCRICDCRISIPCETTCGH-TFCSLCIRRHLGTQPFCPVCRED 68
Score = 28.5 bits (63), Expect = 4.1
Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 9/61 (14%)
Query: 225 DTSTSDIQKLQQQLQDIKEQTMCPVCLDRLK-NMIFLCGHGTCQMCGDR----MSECPIC 279
D + + I L+ + C +C R+ CGH C +C R CP+C
Sbjct: 10 DWNQTKIPSLKG----LDSMLRCRICDCRISIPCETTCGHTFCSLCIRRHLGTQPFCPVC 65
Query: 280 R 280
R
Sbjct: 66 R 66
>gnl|CDD|227861 COG5574, PEX10, RING-finger-containing E3 ubiquitin ligase
[Posttranslational modification, protein turnover,
chaperones].
Length = 271
Score = 31.8 bits (72), Expect = 0.35
Identities = 11/42 (26%), Positives = 18/42 (42%), Gaps = 5/42 (11%)
Query: 80 ECRICSDLKRDILFQPCGHVACCS-----VCAPRVKKCLICR 116
+C +C + PCGH+ C S + + C +CR
Sbjct: 217 KCFLCLEEPEVPSCTPCGHLFCLSCLLISWTKKKYEFCPLCR 258
>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate
protein-protein interactions in very diverse families of
proteins. The number of ANK repeats in a protein can
range from 2 to over 20 (ankyrins, for example). ANK
repeats may occur in combinations with other types of
domains. The structural repeat unit contains two
antiparallel helices and a beta-hairpin, repeats are
stacked in a superhelical arrangement; this alignment
contains 4 consecutive repeats.
Length = 126
Score = 30.4 bits (69), Expect = 0.40
Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
Query: 8 ADKKSSASIACFLAGNGADLSIKNKKGQTPLDLC---PDPNLCKALTKCYKDKEV 59
A K I L GAD++ ++K G TPL L + ++ K L K D
Sbjct: 47 AAKNGHLEIVKLLLEKGADVNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNA 101
Score = 30.0 bits (68), Expect = 0.64
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 15 SIACFLAGNGADLSIKNKKGQTPLDLC 41
+ L +GAD++ ++K G+TPL L
Sbjct: 87 DVVKLLLKHGADVNARDKDGRTPLHLA 113
Score = 29.7 bits (67), Expect = 0.91
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 10 KKSSASIACFLAGNGADLSIKNKKGQTPLDL 40
+ L NGAD++ K+ G+TPL L
Sbjct: 16 SNGHLEVVKLLLENGADVNAKDNDGRTPLHL 46
>gnl|CDD|227502 COG5175, MOT2, Transcriptional repressor [Transcription].
Length = 480
Score = 31.6 bits (71), Expect = 0.44
Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 10/59 (16%)
Query: 233 KLQQQLQDIKEQTMCPVCLDRL----KNMI-FLCGHGTCQMCGDRMSE-----CPICRK 281
+Q+ E+ CP+C++ + KN CG+ CQ C + + + CP CR+
Sbjct: 3 NVQEIHNSEDEEDYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRR 61
>gnl|CDD|222931 PHA02798, PHA02798, ankyrin-like protein; Provisional.
Length = 489
Score = 31.7 bits (72), Expect = 0.46
Identities = 15/34 (44%), Positives = 18/34 (52%)
Query: 5 SQAADKKSSASIACFLAGNGADLSIKNKKGQTPL 38
S D K I L NGAD++ KN G+TPL
Sbjct: 80 SNIKDYKHMLDIVKILIENGADINKKNSDGETPL 113
>gnl|CDD|227561 COG5236, COG5236, Uncharacterized conserved protein, contains RING
Zn-finger [General function prediction only].
Length = 493
Score = 31.5 bits (71), Expect = 0.55
Identities = 17/72 (23%), Positives = 26/72 (36%), Gaps = 11/72 (15%)
Query: 220 NNGSRDTSTSDIQKLQQQLQDIKEQTMCPVCLDRLK-NMIFLCGHGTCQMCGDRM----- 273
NN S + + + +E C +C + + CGH C C R+
Sbjct: 41 NNLSAEPNLTTSSADDTD----EENMNCQICAGSTTYSARYPCGHQICHACAVRLRALYM 96
Query: 274 -SECPICRKAVE 284
CP+CR E
Sbjct: 97 QKGCPLCRTETE 108
>gnl|CDD|222647 pfam14282, FlxA, FlxA-like protein. This family includes FlxA from
E. coli. The expression of FlxA is regulated by the FliA
sigma factor, a transcription factor specific for class
3 flagellar operons. However FlxA is not required for
flagellar function or formation.
Length = 106
Score = 29.7 bits (67), Expect = 0.58
Identities = 12/35 (34%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
Query: 210 VEASTSGALMNNGSRDTSTSDIQKLQQQLQDIKEQ 244
V AS++ ++ S +S S I+ LQ+Q+Q + +Q
Sbjct: 3 VSASSTS---SSASSGSSDSQIKSLQKQIQSLTKQ 34
Score = 28.9 bits (65), Expect = 0.97
Identities = 10/42 (23%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 205 SAATLVEASTSGALMNNGSRDTS-TSDIQKLQQQLQDIKEQT 245
S+ + S+S + ++ S+ S IQ L +QL+++
Sbjct: 1 SSVSASSTSSSASSGSSDSQIKSLQKQIQSLTKQLKELSSSE 42
>gnl|CDD|233632 TIGR01910, DapE-ArgE, acetylornithine deacetylase or
succinyl-diaminopimelate desuccinylase. This group of
sequences contains annotations for both acetylornithine
deacetylase and succinyl-diaminopimelate desuccinylase,
but does not contain any members with experimental
characterization. Bacillus, Staphylococcus and
Sulfolobus species contain multiple hits to this
subfamily and each may have a separate activity.
Determining which is which must await further laboratory
research [Protein fate, Degradation of proteins,
peptides, and glycopeptides].
Length = 375
Score = 29.7 bits (67), Expect = 2.1
Identities = 15/40 (37%), Positives = 17/40 (42%), Gaps = 2/40 (5%)
Query: 35 QTPLDLCPDPNLCKALTKCYKDKEVDQIEPRVGEGDGTED 74
P + PD L KAL K+V IEP V G D
Sbjct: 298 SGPNETPPDSRLVKALEAII--KKVRGIEPEVLVSTGGTD 335
>gnl|CDD|222279 pfam13639, zf-RING_2, Ring finger domain.
Length = 46
Score = 26.6 bits (59), Expect = 2.2
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 8/44 (18%)
Query: 246 MCPVCLDRLKN----MIFLCGHGTCQMCGDRM----SECPICRK 281
CP+CLD + ++ CGH + C D+ + CP+CR
Sbjct: 2 ECPICLDEFEPGEEVVVLPCGHVFHKECLDKWLRSSNTCPLCRA 45
>gnl|CDD|233043 TIGR00599, rad18, DNA repair protein rad18. All proteins in this
family for which functions are known are involved in
nucleotide excision repair.This family is based on the
phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis,
Stanford University) [DNA metabolism, DNA replication,
recombination, and repair].
Length = 397
Score = 29.2 bits (65), Expect = 2.5
Identities = 15/46 (32%), Positives = 18/46 (39%), Gaps = 5/46 (10%)
Query: 77 TLDECRICSDLKRDILFQPCGHVACCSVCAPRV----KKCLICREP 118
T C IC D + C H CS+C R KC +CR
Sbjct: 25 TSLRCHICKDFFDVPVLTSCSHTF-CSLCIRRCLSNQPKCPLCRAE 69
>gnl|CDD|214546 smart00184, RING, Ring finger. E3 ubiquitin-protein ligase
activity is intrinsic to the RING domain of c-Cbl and is
likely to be a general function of this domain; Various
RING fingers exhibit binding activity towards E2
ubiquitin-conjugating enzymes (Ubc' s).
Length = 40
Score = 26.3 bits (58), Expect = 2.9
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 7/40 (17%)
Query: 247 CPVCLDRLKN--MIFLCGHGTCQMCGDRM-----SECPIC 279
CP+CL+ +I CGH C+ C + + CPIC
Sbjct: 1 CPICLEEYLKDPVILPCGHTFCRSCIRKWLESGNNTCPIC 40
>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional.
Length = 434
Score = 29.2 bits (65), Expect = 3.1
Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 5/45 (11%)
Query: 23 NGADLSIKNKKGQTPLD-----LCPDPNLCKALTKCYKDKEVDQI 62
+ AD+SIK+ KG+ P+D + DP + + KE D++
Sbjct: 277 HKADISIKDNKGENPIDTAFKYINKDPVIKDIIANAVLIKEADKL 321
>gnl|CDD|233690 TIGR02025, BchH, magnesium chelatase, H subunit. This model
represents the H subunit of the magnesium chelatase
complex responsible for magnesium insertion into the
protoporphyrin IX ring in the biosynthesis of both
chlorophyll and bacteriochlorophyll. In
chlorophyll-utilizing species, this gene is known as
ChlH, while in bacteriochlorophyll-utilizing spoecies it
is called BchH. Subunit H is the largest (~140kDa) of the
three subunits (the others being BchD/ChlD and
BchI/ChlI), and is known to bind protoporphyrin IX.
Subunit H is homologous to the CobN subunit of
cobaltochelatase and by anology with that enzyme, subunit
H is believed to also bind the magnesium ion which is
inserted into the ring. In conjunction with the
hydrolysis of ATP by subunits I and D, a conformation
change is believed to happen in subunit H causing the
magnesium ion insertion into the distorted protoporphyrin
ring [Biosynthesis of cofactors, prosthetic groups, and
carriers, Chlorophyll and bacteriochlorphyll].
Length = 1224
Score = 29.4 bits (66), Expect = 3.2
Identities = 13/59 (22%), Positives = 26/59 (44%), Gaps = 9/59 (15%)
Query: 189 TDPAEEENAVALSPNTS---AATLVEASTSGALMNNGSRDTSTSDIQKLQQQLQDIKEQ 244
DP E L+PN + L+EA G + ++KLQ+ ++++++
Sbjct: 1168 LDPEMRERLAQLNPNAFRNIVSRLLEAH------GRGYWEADPDKLEKLQELYEELEDR 1220
>gnl|CDD|221489 pfam12252, SidE, Dot/Icm substrate protein. This family of proteins
is found in bacteria. Proteins in this family are
typically between 397 and 1543 amino acids in length.
This family is the SidE protein in the Dot/Icm pathway of
Legionella pneumophila bacteria. There is little
literature describing the family.
Length = 1443
Score = 29.1 bits (65), Expect = 3.3
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 219 MNNGSRDTSTSDIQKLQQQLQDI 241
M+ G+ SDI+KL++QLQ I
Sbjct: 1154 MHTGTDKVDFSDIEKLEKQLQVI 1176
>gnl|CDD|100796 PRK01156, PRK01156, chromosome segregation protein; Provisional.
Length = 895
Score = 29.1 bits (65), Expect = 3.3
Identities = 13/55 (23%), Positives = 24/55 (43%), Gaps = 5/55 (9%)
Query: 221 NGSRDTSTSDIQKLQQQLQDIKEQTMCPVCLDRLKNMIFLCGHGTCQMCGDRMSE 275
N +S + L Q+++ ++E + +NM L G C +CG + E
Sbjct: 415 NVKLQDISSKVSSLNQRIRALRENLD-----ELSRNMEMLNGQSVCPVCGTTLGE 464
>gnl|CDD|227545 COG5220, TFB3, Cdk activating kinase (CAK)/RNA polymerase II
transcription initiation/nucleotide excision repair
factor TFIIH, subunit TFB3 [Cell division and chromosome
partitioning / Transcription / DNA replication,
recombination, and repair].
Length = 314
Score = 28.8 bits (64), Expect = 3.4
Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 14/58 (24%)
Query: 242 KEQTMCPVC-LDRLKN--MIFL----CGHGTCQMCGDRM-----SECPI--CRKAVEK 285
E CPVC DR N + L C H C+ C DR+ ++CP C K + K
Sbjct: 8 MEDRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGKILRK 65
>gnl|CDD|240423 PTZ00454, PTZ00454, 26S protease regulatory subunit 6B-like
protein; Provisional.
Length = 398
Score = 28.2 bits (63), Expect = 5.1
Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 12/62 (19%)
Query: 200 LSPNTSAA------TLV-----EASTSGALMNNGSR-DTSTSDIQKLQQQLQDIKEQTMC 247
L PN S A +V EA +S L+ + D + SDI L Q Q+I+E
Sbjct: 104 LKPNASVALHRHSHAVVDILPPEADSSIQLLQMSEKPDVTYSDIGGLDIQKQEIREAVEL 163
Query: 248 PV 249
P+
Sbjct: 164 PL 165
>gnl|CDD|184540 PRK14153, PRK14153, heat shock protein GrpE; Provisional.
Length = 194
Score = 27.9 bits (62), Expect = 5.5
Identities = 9/55 (16%), Positives = 24/55 (43%)
Query: 192 AEEENAVALSPNTSAATLVEASTSGALMNNGSRDTSTSDIQKLQQQLQDIKEQTM 246
++E + + + A + L T+ S+ +K +++++ +KEQ
Sbjct: 3 SKEVGKDKAENSEARNSGSSAEEAEELKEEPEDSTADSETEKCREEIESLKEQLF 57
>gnl|CDD|215715 pfam00097, zf-C3HC4, Zinc finger, C3HC4 type (RING finger). The
C3HC4 type zinc-finger (RING finger) is a cysteine-rich
domain of 40 to 60 residues that coordinates two zinc
ions, and has the consensus sequence:
C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C
where X is any amino acid. Many proteins containing a
RING finger play a key role in the ubiquitination
pathway.
Length = 40
Score = 24.7 bits (54), Expect = 8.4
Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 7/40 (17%)
Query: 247 CPVCLDRLKN--MIFLCGHGTCQMCGDRM-----SECPIC 279
CP+CL+ K+ I CGH C C CP+C
Sbjct: 1 CPICLEEPKDPVTILPCGHLFCSKCILSWLESGNVTCPLC 40
>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies).
Length = 91
Score = 26.1 bits (58), Expect = 8.8
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 16 IACFLAGNGADLSIKNKKGQTPLDLC 41
I L +GAD++ K+K G T L L
Sbjct: 43 IVKLLLEHGADVNAKDKDGNTALHLA 68
>gnl|CDD|235549 PRK05658, PRK05658, RNA polymerase sigma factor RpoD; Validated.
Length = 619
Score = 27.5 bits (62), Expect = 9.4
Identities = 11/44 (25%), Positives = 21/44 (47%), Gaps = 5/44 (11%)
Query: 217 ALMNNGSRDTSTS---DIQKLQQQLQDIKEQTMCPVCLDRLKNM 257
+ +I+KLQQ+L+ I+E+T + + LK +
Sbjct: 326 IASGKPWSEFLVRVYDEIKKLQQELEAIEEETGLTI--EELKEI 367
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.134 0.423
Gapped
Lambda K H
0.267 0.0804 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 13,449,594
Number of extensions: 1191532
Number of successful extensions: 1391
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1374
Number of HSP's successfully gapped: 69
Length of query: 290
Length of database: 10,937,602
Length adjustment: 96
Effective length of query: 194
Effective length of database: 6,679,618
Effective search space: 1295845892
Effective search space used: 1295845892
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.0 bits)