RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7970
(290 letters)
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase
complex, ring zinc-finger, UBL conjugation pathway;
2.10A {Homo sapiens} PDB: 2yhn_A
Length = 79
Score = 63.2 bits (154), Expect = 2e-13
Identities = 22/62 (35%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 231 IQKLQQQLQDIKEQTMCPVCLDRLKNMIFL-CGHG-TCQMCGDRMSECPICRKAVEKRIL 288
+ LQ++L+ +KE +C VC + N F CGH C+ C ++ CP+CR VE
Sbjct: 5 TRVLQEKLRKLKEAMLCMVCCEEEINSTFCPCGHTVCCESCAAQLQSCPVCRSRVEHVQH 64
Query: 289 LY 290
+Y
Sbjct: 65 VY 66
Score = 60.9 bits (148), Expect = 2e-12
Identities = 16/45 (35%), Positives = 25/45 (55%)
Query: 81 CRICSDLKRDILFQPCGHVACCSVCAPRVKKCLICREPVEKRIKI 125
C +C + + + F PCGH CC CA +++ C +CR VE +
Sbjct: 21 CMVCCEEEINSTFCPCGHTVCCESCAAQLQSCPVCRSRVEHVQHV 65
Score = 44.8 bits (106), Expect = 1e-06
Identities = 20/54 (37%), Positives = 34/54 (62%)
Query: 116 REPVEKRIKIEECMVCSLKKASVLFKPCYHMVACESCASLMKKCVQCRTQIDHM 169
+E + K + CMVC ++ + F PC H V CESCA+ ++ C CR++++H+
Sbjct: 9 QEKLRKLKEAMLCMVCCEEEINSTFCPCGHTVCCESCAAQLQSCPVCRSRVEHV 62
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian,
zinc-binding domain, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 75
Score = 62.9 bits (153), Expect = 3e-13
Identities = 18/70 (25%), Positives = 39/70 (55%), Gaps = 2/70 (2%)
Query: 223 SRDTSTSDIQKLQQQLQDIKEQTMCPVCLDRLKNMIFL-CGH-GTCQMCGDRMSECPICR 280
S ++QL+ ++E+ +C +C+DR ++F+ CGH TC+ C + + +CP+C
Sbjct: 4 GSSGSLQKEISTEEQLRRLQEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAVDKCPMCY 63
Query: 281 KAVEKRILLY 290
+ + ++
Sbjct: 64 TVITFKQKIF 73
Score = 59.8 bits (145), Expect = 3e-12
Identities = 19/53 (35%), Positives = 26/53 (49%)
Query: 73 EDMVTLDECRICSDLKRDILFQPCGHVACCSVCAPRVKKCLICREPVEKRIKI 125
+ C+IC D I+F PCGH+ C CA V KC +C + + KI
Sbjct: 20 RRLQEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAVDKCPMCYTVITFKQKI 72
Score = 47.8 bits (114), Expect = 8e-08
Identities = 17/67 (25%), Positives = 34/67 (50%)
Query: 106 APRVKKCLICREPVEKRIKIEECMVCSLKKASVLFKPCYHMVACESCASLMKKCVQCRTQ 165
+ ++K + E + + + + C +C + +++F PC H+V C+ CA + KC C T
Sbjct: 6 SGSLQKEISTEEQLRRLQEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAVDKCPMCYTV 65
Query: 166 IDHMHPM 172
I +
Sbjct: 66 ITFKQKI 72
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1,
ring domain, zinc-binding domain, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 68
Score = 59.4 bits (144), Expect = 5e-12
Identities = 11/47 (23%), Positives = 23/47 (48%)
Query: 79 DECRICSDLKRDILFQPCGHVACCSVCAPRVKKCLICREPVEKRIKI 125
+C +C + + + PC H C C ++C +CR+ V++ +
Sbjct: 16 KDCVVCQNGTVNWVLLPCRHTCLCDGCVKYFQQCPMCRQFVQESFAL 62
Score = 48.3 bits (115), Expect = 4e-08
Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 2/54 (3%)
Query: 239 QDIKEQTMCPVCLDRLKNMIFL-CGH-GTCQMCGDRMSECPICRKAVEKRILLY 290
+ C VC + N + L C H C C +CP+CR+ V++ L
Sbjct: 10 PSEENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKYFQQCPMCRQFVQESFALS 63
Score = 46.7 bits (111), Expect = 1e-07
Identities = 12/53 (22%), Positives = 22/53 (41%)
Query: 126 EECMVCSLKKASVLFKPCYHMVACESCASLMKKCVQCRTQIDHMHPMVVCCGG 178
++C+VC + + PC H C+ C ++C CR + + G
Sbjct: 16 KDCVVCQNGTVNWVLLPCRHTCLCDGCVKYFQQCPMCRQFVQESFALSGPSSG 68
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA,
apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase,
IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB:
1qbh_A 2l9m_A 3eb5_A 3eb6_A
Length = 345
Score = 63.8 bits (153), Expect = 9e-12
Identities = 17/56 (30%), Positives = 31/56 (55%)
Query: 70 DGTEDMVTLDECRICSDLKRDILFQPCGHVACCSVCAPRVKKCLICREPVEKRIKI 125
+ + C++C D + ++F PCGH+ C CAP ++KC ICR ++ ++
Sbjct: 287 EQLRRLQEERTCKVCMDKEVSVVFIPCGHLVVCQECAPSLRKCPICRGIIKGTVRT 342
Score = 56.1 bits (133), Expect = 3e-09
Identities = 30/200 (15%), Positives = 66/200 (33%), Gaps = 9/200 (4%)
Query: 93 FQPCGHVACCSVCAPRVKKCLICREPVEKRIKIEECMVCSLKKASVLFKPCYHMVACESC 152
++ + + A K+ + E+ + ++ + A C +
Sbjct: 151 YKTVNDIVSALLNAEDEKREEEKEKQAEEMASDDLSLIRKNRMALFQQLTCVLPILDNLL 210
Query: 153 ASLMKKCVQCRTQIDHMHPMVVCCGGPGIISEVQHTTDPAEEENAVALSPNTSAATLVEA 212
+ + + + E+ T A +
Sbjct: 211 KANVINKQEHDIIKQKTQIPLQA-------RELIDTILVKGNAAANIFKNSLKEIDSTLY 263
Query: 213 STSGALMNNGSRDTSTSDIQKLQQQLQDIKEQTMCPVCLDRLKNMIFL-CGH-GTCQMCG 270
N T L++QL+ ++E+ C VC+D+ +++F+ CGH CQ C
Sbjct: 264 KNLFVDKNMKYIPTEDVSGLSLEEQLRRLQEERTCKVCMDKEVSVVFIPCGHLVVCQECA 323
Query: 271 DRMSECPICRKAVEKRILLY 290
+ +CPICR ++ + +
Sbjct: 324 PSLRKCPICRGIIKGTVRTF 343
Score = 53.4 bits (126), Expect = 2e-08
Identities = 22/98 (22%), Positives = 36/98 (36%)
Query: 72 TEDMVTLDECRICSDLKRDILFQPCGHVACCSVCAPRVKKCLICREPVEKRIKIEECMVC 131
+ + + L++ L E + + + C VC
Sbjct: 242 VKGNAAANIFKNSLKEIDSTLYKNLFVDKNMKYIPTEDVSGLSLEEQLRRLQEERTCKVC 301
Query: 132 SLKKASVLFKPCYHMVACESCASLMKKCVQCRTQIDHM 169
K+ SV+F PC H+V C+ CA ++KC CR I
Sbjct: 302 MDKEVSVVFIPCGHLVVCQECAPSLRKCPICRGIIKGT 339
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative
splicing, HOST-virus interaction, UBL conjugation
pathway, zinc-finger, polymorphism; HET: FLC; 2.20A
{Homo sapiens} PDB: 2vjf_B*
Length = 63
Score = 48.7 bits (116), Expect = 3e-08
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 6/55 (10%)
Query: 77 TLDECRICSDLKRD--ILFQPCGHVACCSVCAPRVKK----CLICREPVEKRIKI 125
L C +C RD I+ GH+ C CA R+KK C IC++ ++ IK+
Sbjct: 6 LLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQLVIKV 60
Score = 37.1 bits (86), Expect = 4e-04
Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 8/53 (15%)
Query: 246 MCPVCLDRLKNMIFL---CGHG-TCQMCGDRM----SECPICRKAVEKRILLY 290
C +C R ++ + GH TC C R+ + CPIC+K ++ I ++
Sbjct: 9 PCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQLVIKVF 61
Score = 32.1 bits (73), Expect = 0.020
Identities = 12/49 (24%), Positives = 22/49 (44%), Gaps = 6/49 (12%)
Query: 126 EECMVC--SLKKASVLFKPCYHMVACESCASLMKK----CVQCRTQIDH 168
+ C +C + +++ H+V C CA +KK C C+ +I
Sbjct: 8 KPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQL 56
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation,
alternative splicing, HOST-virus interaction, UBL
conjugation pathway, zinc-finger, polymorphism; HET:
FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Length = 64
Score = 47.9 bits (114), Expect = 6e-08
Identities = 15/60 (25%), Positives = 30/60 (50%), Gaps = 6/60 (10%)
Query: 72 TEDMVTLDECRICSDLKRD--ILFQPCGHVACCSVCAPRVKK----CLICREPVEKRIKI 125
+ + ++ C IC ++ I+ GH+ C CA ++KK C +CR+P++ +
Sbjct: 2 SLPLNAIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQMIVLT 61
Score = 40.2 bits (94), Expect = 3e-05
Identities = 15/60 (25%), Positives = 25/60 (41%), Gaps = 8/60 (13%)
Query: 239 QDIKEQTMCPVCLDRLKNMIFL---CGHG-TCQMCGDRM----SECPICRKAVEKRILLY 290
+ C +C R KN + GH C C ++ CP+CR+ ++ +L Y
Sbjct: 3 LPLNAIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQMIVLTY 62
Score = 31.7 bits (72), Expect = 0.029
Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 6/49 (12%)
Query: 126 EECMVC--SLKKASVLFKPCYHMVACESCASLMKK----CVQCRTQIDH 168
E C++C K ++ H++AC +CA +KK C CR I
Sbjct: 9 EPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQM 57
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin
ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB:
2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A
2ldr_A*
Length = 389
Score = 47.5 bits (112), Expect = 2e-06
Identities = 12/61 (19%), Positives = 23/61 (37%), Gaps = 6/61 (9%)
Query: 232 QKLQQQLQDIKEQTMCPVCLDRLKNMIFL-CGHGTCQMC-----GDRMSECPICRKAVEK 285
++ + + +C +C + K++ CGH C C CP CR ++
Sbjct: 320 EQYELYCEMGSTFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKG 379
Query: 286 R 286
Sbjct: 380 T 380
Score = 42.8 bits (100), Expect = 8e-05
Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
Query: 73 EDMVTLDECRICSDLKRDILFQPCGHVACCS----VCAPRVKKCLICREPVEKRIKI 125
E T C+IC++ +D+ +PCGH+ C S + C CR ++ I
Sbjct: 327 EMGSTFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTEPI 383
Score = 30.1 bits (67), Expect = 0.96
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 6/54 (11%)
Query: 126 EECMVCSLKKASVLFKPCYHMVACESC-----ASLMKKCVQCRTQIDHMHPMVV 174
+ C +C+ V +PC H++ C SC S + C CR +I P+VV
Sbjct: 333 QLCKICAENDKDVKIEPCGHLM-CTSCLTSWQESEGQGCPFCRCEIKGTEPIVV 385
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger,
zinc-binding protein, heterodimer, ubiquitin ligase,
antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Length = 112
Score = 44.3 bits (105), Expect = 3e-06
Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 8/72 (11%)
Query: 225 DTSTSDIQKLQQQLQDIKEQTMCPVCLDRLKN-MIFLCGHGTCQMC-------GDRMSEC 276
D S ++++Q + +++ CP+CL+ +K + C H C+ C S+C
Sbjct: 2 DLSALRVEEVQNVINAMQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQC 61
Query: 277 PICRKAVEKRIL 288
P+C+ + KR L
Sbjct: 62 PLCKNDITKRSL 73
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding,
translesion synthesis, UB conjugation pathway; 1.80A
{Homo sapiens}
Length = 99
Score = 41.3 bits (97), Expect = 3e-05
Identities = 14/66 (21%), Positives = 24/66 (36%), Gaps = 6/66 (9%)
Query: 229 SDIQKLQQQLQDIKEQTMCPVCLDRLKN--MIFLCGHGTCQMC----GDRMSECPICRKA 282
S ++ I + C +C + +I C H C +C ++CP C
Sbjct: 7 SRWPPGLAVMKTIDDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVT 66
Query: 283 VEKRIL 288
V + L
Sbjct: 67 VTEPDL 72
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2,
protein structure initiative, northeast structural
genomics consortium, NESG; HET: MSE; 2.29A {Homo
sapiens}
Length = 100
Score = 41.4 bits (97), Expect = 3e-05
Identities = 15/63 (23%), Positives = 32/63 (50%), Gaps = 7/63 (11%)
Query: 235 QQQLQDIKEQTMCPVCLDRLKN--MIFLCGHGTCQMC-----GDRMSECPICRKAVEKRI 287
+Q ++ I E C +C+++L++ + C C C ++ ++CP CR ++ R
Sbjct: 13 EQSVESIAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRE 72
Query: 288 LLY 290
L+
Sbjct: 73 LVN 75
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase,
nuclear protein, chromosomal protein, transcription
regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Length = 165
Score = 42.3 bits (99), Expect = 3e-05
Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 7/71 (9%)
Query: 226 TSTSDIQKLQQQLQDIKEQTMCPVCLDRLKN--MIFLCGHGTCQMC-----GDRMSECPI 278
+ +D ++ + + + MCP+CLD LKN C H C C ECP
Sbjct: 36 EAITDGLEIVVSPRSLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPT 95
Query: 279 CRKAVEKRILL 289
CRK + + L
Sbjct: 96 CRKKLVSKRSL 106
>4epo_C E3 ubiquitin-protein ligase RNF8; coiled-coil, E3 ubiquitin ligase,
protein binding complex; 4.80A {Homo sapiens}
Length = 149
Score = 41.6 bits (97), Expect = 6e-05
Identities = 16/68 (23%), Positives = 26/68 (38%), Gaps = 5/68 (7%)
Query: 224 RDTSTSDIQKLQQQLQDIKEQTMCPVCLDRLKNMIFL-CGHGTCQMC----GDRMSECPI 278
+ L ++ + C +C + + L C H C C R ECPI
Sbjct: 44 EKMQAQKEEVLSHMNDVLENELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKRKIECPI 103
Query: 279 CRKAVEKR 286
CRK ++ +
Sbjct: 104 CRKDIKSK 111
Score = 30.4 bits (68), Expect = 0.31
Identities = 12/46 (26%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
Query: 80 ECRICSDLKRDILFQPCGHV---ACCSVCAPRVKKCLICREPVEKR 122
+C ICS+ + + C H C + R +C ICR+ ++ +
Sbjct: 66 QCIICSEYFIEAVTLNCAHSFCSYCINEWMKRKIECPICRKDIKSK 111
>2ecv_A Tripartite motif-containing protein 5; metal binding protein,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 85
Score = 39.2 bits (92), Expect = 1e-04
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 11/60 (18%)
Query: 238 LQDIKEQTMCPVCLDRLKN-MIFLCGHGTCQMC----------GDRMSECPICRKAVEKR 286
L ++KE+ CP+CL+ L + CGH CQ C S CP+CR + +
Sbjct: 13 LVNVKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPE 72
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger,
zinc-binding protein, heterodimer, ubiquitin ligase,
antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Length = 117
Score = 39.9 bits (93), Expect = 1e-04
Identities = 11/66 (16%), Positives = 21/66 (31%), Gaps = 4/66 (6%)
Query: 225 DTSTSDIQKLQQQLQDIKEQTMCPVCLDRLKN--MIFLCGHGTCQMCGDRM--SECPICR 280
+ L +++ C C + L+ + C H C C + CP+C
Sbjct: 3 PDGRGAWAHSRAALDRLEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIGTGCPVCY 62
Query: 281 KAVEKR 286
+
Sbjct: 63 TPAWIQ 68
>1z6u_A NP95-like ring finger protein isoform B; structural genomics
consortium, ligase, ubiquitin-protein ligase, cell cycle
regulation, SGC; 2.10A {Homo sapiens}
Length = 150
Score = 40.4 bits (94), Expect = 1e-04
Identities = 23/110 (20%), Positives = 41/110 (37%), Gaps = 12/110 (10%)
Query: 183 SEVQHTTDPAEEENAVALSPNTSAATLVEASTSGALMNNGSRDTSTSDIQKLQQQLQDIK 242
S+V +D AE A L+P + N D S + + L+ ++
Sbjct: 23 SKVYKASDSAEAIEAFQLTPQ------QQHLIREDCQNQKLWDEVLSHLVEGPNFLKKLE 76
Query: 243 EQTMCPVCLDRLKNMIFL-CGHGTCQMC-----GDRMSECPICRKAVEKR 286
+ MC C + + + C H C+ C ++ CP CR + +
Sbjct: 77 QSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQN 126
Score = 27.7 bits (61), Expect = 3.0
Identities = 11/48 (22%), Positives = 16/48 (33%), Gaps = 6/48 (12%)
Query: 80 ECRICSDLKRDILFQPCGHVACCSVC-----APRVKKCLICREPVEKR 122
C C +L + C H C C +V C CR + +
Sbjct: 80 MCVCCQELVYQPVTTECFHNVCKD-CLQRSFKAQVFSCPACRHDLGQN 126
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA
repair, ring finger domain, metal binding, DNA
replication; 1.75A {Homo sapiens}
Length = 124
Score = 40.0 bits (93), Expect = 1e-04
Identities = 15/70 (21%), Positives = 25/70 (35%), Gaps = 6/70 (8%)
Query: 223 SRDTSTSDIQKLQQQLQDIKEQTMCPVCLDRLKNMIFL-CGHGTCQMC-----GDRMSEC 276
S + Q L ++E C C + + I C H C+ C ++ C
Sbjct: 31 SLKDRPASGSPFQLFLSKVEETFQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQVFSC 90
Query: 277 PICRKAVEKR 286
P CR + +
Sbjct: 91 PACRYDLGRS 100
Score = 29.6 bits (66), Expect = 0.46
Identities = 11/48 (22%), Positives = 17/48 (35%), Gaps = 6/48 (12%)
Query: 80 ECRICSDLKRDILFQPCGHVACCSVC-----APRVKKCLICREPVEKR 122
+C C +L + C H C C +V C CR + +
Sbjct: 54 QCICCQELVFRPITTVCQHNVCKD-CLDRSFRAQVFSCPACRYDLGRS 100
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 73
Score = 38.5 bits (90), Expect = 1e-04
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 8/59 (13%)
Query: 238 LQDIKEQTMCPVCLDRLKN-MIFLCGHGTCQMC-------GDRMSECPICRKAVEKRIL 288
+ ++E+ +CP+CLD L+ + CGH C C +CP+C+ +V K +
Sbjct: 14 VNKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNAI 72
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 70
Score = 38.5 bits (90), Expect = 2e-04
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
Query: 236 QQLQDIKEQTMCPVCLDRLKNMIFLCGHGTCQMCGD----RMSECPICRKAVEK 285
+++ + ++ C +C+D ++I C H CQ C D R CPICR +
Sbjct: 7 GRVKQLTDEEECCICMDGRADLILPCAHSFCQKCIDKWSDRHRNCPICRLQMTG 60
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite
motif protein 34, interferon- responsive finger protein
1; NMR {Homo sapiens}
Length = 79
Score = 38.0 bits (89), Expect = 3e-04
Identities = 16/63 (25%), Positives = 26/63 (41%), Gaps = 12/63 (19%)
Query: 238 LQDIKEQTMCPVCLDRLKN-MIFLCGHGTCQMC-----------GDRMSECPICRKAVEK 285
+++E+ CP+CL+ L + CGH C+ C S CP+C +
Sbjct: 6 SGNVQEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSF 65
Query: 286 RIL 288
L
Sbjct: 66 EHL 68
>2ecw_A Tripartite motif-containing protein 30; metal binding protein,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 85
Score = 37.7 bits (88), Expect = 3e-04
Identities = 20/65 (30%), Positives = 27/65 (41%), Gaps = 11/65 (16%)
Query: 235 QQQLQDIKEQTMCPVCLDRLKN-MIFLCGHGTCQMC----------GDRMSECPICRKAV 283
L+ IKE+ CP+CL+ LK + C H C+ C D CP+CR
Sbjct: 10 SSVLEMIKEEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPY 69
Query: 284 EKRIL 288
L
Sbjct: 70 PFGNL 74
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein
structure initiati midwest center F or structural
genomics, MCSG; 1.77A {Leptotrichia buccalis}
Length = 186
Score = 38.9 bits (91), Expect = 7e-04
Identities = 13/52 (25%), Positives = 21/52 (40%), Gaps = 9/52 (17%)
Query: 8 ADKKSSASIACFLAGNGADLSIKNKKGQTPL---------DLCPDPNLCKAL 50
+ ++ I+ FL GAD+ + K+G T D+ LCK
Sbjct: 49 NNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIF 100
Score = 35.8 bits (83), Expect = 0.007
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 20 LAGNGADLSIKNKKGQTPLDL 40
+ +G L IK+K G T L+
Sbjct: 140 FSQSGLQLLIKDKWGLTALEF 160
Score = 33.9 bits (78), Expect = 0.032
Identities = 5/30 (16%), Positives = 11/30 (36%)
Query: 9 DKKSSASIACFLAGNGADLSIKNKKGQTPL 38
D + + GAD++ K + +
Sbjct: 89 DITGTTELCKIFLEKGADITALYKPYKIVV 118
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats,
cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP:
d.211.1.1
Length = 327
Score = 39.6 bits (92), Expect = 8e-04
Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 7 AADKKSSASIACFLAGNGADLSIKNKKGQTPLDL 40
AA + + SI L GAD I NK G P+D
Sbjct: 290 AA-RLGNISIVDALLDYGADPFIANKSGLRPVDF 322
Score = 32.7 bits (74), Expect = 0.11
Identities = 4/20 (20%), Positives = 10/20 (50%)
Query: 19 FLAGNGADLSIKNKKGQTPL 38
L +G++ + G++ L
Sbjct: 149 HLVKHGSNRLYGDNMGESCL 168
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein
of testis, proliferation potential-related protein,
protein P2P-R; NMR {Homo sapiens}
Length = 74
Score = 35.9 bits (83), Expect = 0.001
Identities = 12/56 (21%), Positives = 21/56 (37%), Gaps = 8/56 (14%)
Query: 239 QDIKEQTMCPVCLDRLKN--MIFLCGHGTCQMC------GDRMSECPICRKAVEKR 286
I ++ +C +C D + + +I CG+ C C CP C +
Sbjct: 10 DPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSP 65
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 38.1 bits (88), Expect = 0.001
Identities = 10/55 (18%), Positives = 22/55 (40%), Gaps = 2/55 (3%)
Query: 226 TSTSDIQKLQQQLQDIKEQTMCPVCLDRLKNMIFLCGHG--TCQMCGDRMSECPI 278
T S ++ ++ ++ CP C ++ G C +CG +S+ +
Sbjct: 3 TRESIDKRAGRRGPNLNIVLTCPECKVYPPKIVERFSEGDVVCALCGLVLSDKLV 57
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb,
E3-ligase, nuclear protein, chromosomal protein,
transcription regulation; 2.0A {Mus musculus} PDB:
3rpg_B 2h0d_A
Length = 108
Score = 36.3 bits (84), Expect = 0.002
Identities = 15/60 (25%), Positives = 23/60 (38%), Gaps = 6/60 (10%)
Query: 237 QLQDIKEQTMCPVCLDRLKN--MIFLCGHGTCQMCG----DRMSECPICRKAVEKRILLY 290
++ ++ MC +C + I C H C+ C + CPIC V K L
Sbjct: 8 KITELNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKTRPLL 67
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase
(M130), serine/threonine protein phosphatase PP1-beta
(OR delta) catalytic subunit; myosin phosphatase; HET:
PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Length = 299
Score = 38.2 bits (90), Expect = 0.002
Identities = 11/35 (31%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 16 IACFLAGNGADLSIKNKKGQTPLDLCPDPNLCKAL 50
L N D+ NK GQT D+ D ++ L
Sbjct: 247 ACRILVENLCDMEAVNKVGQTAFDVA-DEDILGYL 280
Score = 37.5 bits (88), Expect = 0.004
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 16 IACFLAGNGADLSIKNKKGQTPLDLC 41
IA +L GA + N +G TPLD+
Sbjct: 121 IAEYLISQGAHVGAVNSEGDTPLDIA 146
Score = 31.7 bits (73), Expect = 0.22
Identities = 5/23 (21%), Positives = 7/23 (30%)
Query: 16 IACFLAGNGADLSIKNKKGQTPL 38
+L + K G T L
Sbjct: 181 ARQWLNSGHINDVRHAKSGGTAL 203
Score = 31.3 bits (72), Expect = 0.33
Identities = 8/23 (34%), Positives = 10/23 (43%)
Query: 16 IACFLAGNGADLSIKNKKGQTPL 38
L GAD++ N G T L
Sbjct: 55 EVLRLLERGADINYANVDGLTAL 77
Score = 30.9 bits (71), Expect = 0.40
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 16 IACFLAGNGADLSIKNKKGQTPL 38
+ FL NGA+++ + +G PL
Sbjct: 88 MVKFLVENGANINQPDNEGWIPL 110
Score = 30.5 bits (70), Expect = 0.48
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 16 IACFLAGNGADLSIKNKKGQTPL 38
+ L D++IK+ G TPL
Sbjct: 214 VLKLLIQARYDVNIKDYDGWTPL 236
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 72
Score = 35.1 bits (81), Expect = 0.002
Identities = 13/55 (23%), Positives = 21/55 (38%), Gaps = 6/55 (10%)
Query: 237 QLQDIKEQTMCPVCLDRLKN--MIFLCGHGTCQMCG----DRMSECPICRKAVEK 285
L ++ +C +C L + I C H C+ C + CP C V +
Sbjct: 8 NLSELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQ 62
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing,
mRNA splicing; NMR {Homo sapiens}
Length = 92
Score = 35.5 bits (82), Expect = 0.002
Identities = 13/62 (20%), Positives = 23/62 (37%), Gaps = 8/62 (12%)
Query: 233 KLQQQLQDIKEQTMCPVCLDRLKN--MIFLCGHGTCQMC------GDRMSECPICRKAVE 284
L + I ++ +C +C D + + +I CG+ C C CP C +
Sbjct: 2 PLGSEDDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 61
Query: 285 KR 286
Sbjct: 62 SP 63
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch,
ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB:
3ixe_A 2kbx_A
Length = 179
Score = 37.0 bits (87), Expect = 0.003
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 16 IACFLAGNGADLSIKNKKGQTPLDL 40
+A L NGA +SI NK G+ P+D
Sbjct: 120 VAEDLVANGALVSICNKYGEMPVDK 144
Score = 31.6 bits (73), Expect = 0.18
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 16 IACFLAGNGADLSIKNKKGQTPL 38
+ L GA +++ N+ TPL
Sbjct: 54 VVEMLIMRGARINVMNRGDDTPL 76
Score = 31.2 bits (72), Expect = 0.23
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 16 IACFLAGNGADLSIKNKKGQTPL 38
I L AD++ N+ G PL
Sbjct: 87 IVQKLLQYKADINAVNEHGNVPL 109
Score = 26.6 bits (60), Expect = 8.5
Identities = 7/33 (21%), Positives = 13/33 (39%), Gaps = 2/33 (6%)
Query: 7 AADKKSSASIACFLAGNGA-DLSIKNKKGQTPL 38
++ +A N DL+ + G +PL
Sbjct: 12 QC-REGNAVAVRLWLDNTENDLNQGDDHGFSPL 43
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 66
Score = 34.8 bits (80), Expect = 0.003
Identities = 11/55 (20%), Positives = 25/55 (45%), Gaps = 6/55 (10%)
Query: 238 LQDIKEQTMCPVCLDRLKN-MIFLCGHGTCQMCGDRM-----SECPICRKAVEKR 286
++ ++++ C C L + CGH C+ C + +C C++++ K
Sbjct: 9 VKTVEDKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSSSSPKCTACQESIVKD 63
Score = 30.5 bits (69), Expect = 0.079
Identities = 11/47 (23%), Positives = 18/47 (38%), Gaps = 4/47 (8%)
Query: 80 ECRICSDLKRDILFQPCGHVAC----CSVCAPRVKKCLICREPVEKR 122
+C C + CGH C ++ + KC C+E + K
Sbjct: 17 KCEKCHLVLCSPKQTECGHRFCESCMAALLSSSSPKCTACQESIVKD 63
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS),
leukemia, transcription regulation; NMR {Homo sapiens}
SCOP: g.44.1.1
Length = 56
Score = 34.3 bits (79), Expect = 0.004
Identities = 12/39 (30%), Positives = 15/39 (38%), Gaps = 2/39 (5%)
Query: 247 CPVCLDRLKNMIFL-CGHGTCQMCGDRMS-ECPICRKAV 283
C C K L C H C C + +CPIC+
Sbjct: 9 CQQCQAEAKCPKLLPCLHTLCSGCLEASGMQCPICQAPW 47
Score = 28.1 bits (63), Expect = 0.45
Identities = 10/40 (25%), Positives = 14/40 (35%)
Query: 80 ECRICSDLKRDILFQPCGHVACCSVCAPRVKKCLICREPV 119
C+ C + PC H C +C IC+ P
Sbjct: 8 RCQQCQAEAKCPKLLPCLHTLCSGCLEASGMQCPICQAPW 47
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix,
SH3, ankyrin repeat, signaling protein, ANK repeat,
cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB:
3ehq_A
Length = 222
Score = 36.8 bits (86), Expect = 0.004
Identities = 9/45 (20%), Positives = 18/45 (40%), Gaps = 1/45 (2%)
Query: 16 IACFLAGNGADLSIKNKKGQTPLDLCPDPNLCKALTKCYKDKEVD 60
I L GA ++N + + D+ + C +L K + +
Sbjct: 155 IVQLLLAKGARTDLRNIEKKLAFDMATNAA-CASLLKKKQGTDAV 198
Score = 30.3 bits (69), Expect = 0.62
Identities = 5/20 (25%), Positives = 8/20 (40%)
Query: 19 FLAGNGADLSIKNKKGQTPL 38
N ++ +K G T L
Sbjct: 91 ECLDNRVGVNGLDKAGSTAL 110
Score = 29.9 bits (68), Expect = 0.83
Identities = 7/32 (21%), Positives = 11/32 (34%)
Query: 7 AADKKSSASIACFLAGNGADLSIKNKKGQTPL 38
A + +L+ +NK G T L
Sbjct: 113 ACHGGHKDIVEMLFTQPNIELNQQNKLGDTAL 144
Score = 29.5 bits (67), Expect = 0.94
Identities = 6/31 (19%), Positives = 11/31 (35%)
Query: 8 ADKKSSASIACFLAGNGADLSIKNKKGQTPL 38
A + AS+ G A ++ N +
Sbjct: 180 ATNAACASLLKKKQGTDAVRTLSNAEDYLDD 210
Score = 28.7 bits (65), Expect = 1.7
Identities = 4/31 (12%), Positives = 5/31 (16%)
Query: 8 ADKKSSASIACFLAGNGADLSIKNKKGQTPL 38
A L D+ T
Sbjct: 19 ALYTFEPRTPDELYIEEGDIIYITDMSDTNW 49
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein
complex, transcription factors, nuclear localization,
DNA binding protein; 2.05A {Mus musculus} SCOP:
d.211.1.1 PDB: 1k3z_D
Length = 282
Score = 36.8 bits (86), Expect = 0.004
Identities = 6/32 (18%), Positives = 8/32 (25%)
Query: 7 AADKKSSASIACFLAGNGADLSIKNKKGQTPL 38
+ L +N G TPL
Sbjct: 131 DSQPNPENEEEPRDEDWRLQLEAENYDGHTPL 162
Score = 34.4 bits (80), Expect = 0.033
Identities = 6/34 (17%), Positives = 11/34 (32%), Gaps = 1/34 (2%)
Query: 7 AADKKSSASIACFLAGNGADLSIKNKKGQTPLDL 40
A + + +A L +GA +P
Sbjct: 232 AL-LRPNPILARLLRAHGAPEPEDGGDKLSPCSS 264
Score = 32.9 bits (76), Expect = 0.097
Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 7 AADKKSSASIACFLAGNGADLSIKNKKGQTPL 38
A + +AS+ L GAD + + G+TPL
Sbjct: 199 AV-EAQAASVLELLLKAGADPTARMYGGRTPL 229
Score = 32.9 bits (76), Expect = 0.10
Identities = 10/32 (31%), Positives = 13/32 (40%), Gaps = 1/32 (3%)
Query: 7 AADKKSSASIACFLAGNGADLSIKNKKGQTPL 38
AA AS L GA + + + G T L
Sbjct: 52 AA-ILGEASTVEKLYAAGAGVLVAERGGHTAL 82
Score = 29.4 bits (67), Expect = 1.1
Identities = 11/33 (33%), Positives = 14/33 (42%), Gaps = 2/33 (6%)
Query: 7 AADKKSSASIACFLAGNGADLSIKNKK-GQTPL 38
A A + L GADL+ G+TPL
Sbjct: 165 AV-IHKDAEMVRLLRDAGADLNKPEPTCGRTPL 196
Score = 27.5 bits (62), Expect = 4.4
Identities = 9/26 (34%), Positives = 11/26 (42%), Gaps = 3/26 (11%)
Query: 16 IACFLAGNGADLS---IKNKKGQTPL 38
FL G A ++N GQT L
Sbjct: 24 FLDFLLGFSAGHEYLDLQNDLGQTAL 49
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 71
Score = 34.4 bits (79), Expect = 0.004
Identities = 12/51 (23%), Positives = 20/51 (39%), Gaps = 5/51 (9%)
Query: 243 EQTMCPVCLDRLKNMIFL-CGHGTCQMC----GDRMSECPICRKAVEKRIL 288
C +CL + + L C H C +C C +CR+ + + L
Sbjct: 14 TVPECAICLQTCVHPVSLPCKHVFCYLCVKGASWLGKRCALCRQEIPEDFL 64
Score = 29.0 bits (65), Expect = 0.36
Identities = 16/59 (27%), Positives = 25/59 (42%), Gaps = 3/59 (5%)
Query: 67 GEGDGTEDMVTLDECRICSDLKRDILFQPCGHV---ACCSVCAPRVKKCLICREPVEKR 122
G T +T+ EC IC + PC HV C + K+C +CR+ + +
Sbjct: 4 GSSGNTAPSLTVPECAICLQTCVHPVSLPCKHVFCYLCVKGASWLGKRCALCRQEIPED 62
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT-
interacting protein, ring domain, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 88
Score = 34.7 bits (80), Expect = 0.005
Identities = 15/72 (20%), Positives = 29/72 (40%), Gaps = 19/72 (26%)
Query: 225 DTSTSDIQKLQQQLQDIKEQTMCPVCLDRLKN-----MIFLCGHGTCQMCGDRMSE---- 275
S+ ++ L++ L+ CP+C++ + CGH C+ C +++
Sbjct: 3 SGSSGNLDALREVLE-------CPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSIN 55
Query: 276 ---CPICRKAVE 284
CP C K
Sbjct: 56 GVRCPFCSKITR 67
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit);
transcription factor, IKB/NFKB complex; 2.30A {Homo
sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Length = 236
Score = 36.4 bits (85), Expect = 0.006
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 10 KKSSASIACFLAGNGADLSIKNKKGQTPL 38
K + + + G+ A L+ +N QTPL
Sbjct: 21 KALTMEVIRQVKGDLAFLNFQNNLQQTPL 49
Score = 34.1 bits (79), Expect = 0.034
Identities = 7/25 (28%), Positives = 12/25 (48%)
Query: 16 IACFLAGNGADLSIKNKKGQTPLDL 40
+ L GAD++ +G +P L
Sbjct: 166 LVSLLLKCGADVNRVTYQGYSPYQL 190
Score = 32.5 bits (75), Expect = 0.094
Identities = 11/32 (34%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 7 AADKKSSASIACFLAGNGADLSIKNKKGQTPL 38
A IA L G G D +++ +G TPL
Sbjct: 52 AVITNQ-PEIAEALLGAGCDPELRDFRGNTPL 82
Score = 27.9 bits (63), Expect = 3.7
Identities = 9/32 (28%), Positives = 13/32 (40%), Gaps = 1/32 (3%)
Query: 8 ADKKSSASIACFLAGNGADLSIKNKK-GQTPL 38
A I L GAD++ + G+T L
Sbjct: 124 ASIHGYLGIVELLVSLGADVNAQEPCNGRTAL 155
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4),
metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Length = 65
Score = 33.8 bits (77), Expect = 0.007
Identities = 16/55 (29%), Positives = 22/55 (40%), Gaps = 11/55 (20%)
Query: 243 EQTMCPVCLD------RLKNMIFLCGHGTCQMCGDRM-----SECPICRKAVEKR 286
+ CP C LK M+ +CGH C+ C D + CP C + K
Sbjct: 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKS 56
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain,
zinc-binding domain, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 58
Score = 33.5 bits (77), Expect = 0.007
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 8/50 (16%)
Query: 238 LQDIKEQTMCPVCLDRLKNMIFL-CGHGTCQMC-------GDRMSECPIC 279
L++++ + C VCL+ LK + + CGH C+ C +R CP+C
Sbjct: 9 LENLQVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVC 58
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and
SOCS box-containing...; ASB9, ANK repeat, L-shaped,
structural protein; 2.20A {Homo sapiens}
Length = 285
Score = 35.9 bits (84), Expect = 0.010
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 7 AADKKSSASIACFLAGNGADLSIKNKKGQTPLDL 40
A + +S +AC L GAD KN +G+ P++L
Sbjct: 228 AVVRTASEELACLLMDFGADTQAKNAEGKRPVEL 261
Score = 30.9 bits (71), Expect = 0.38
Identities = 6/23 (26%), Positives = 8/23 (34%)
Query: 16 IACFLAGNGADLSIKNKKGQTPL 38
L G ++ K TPL
Sbjct: 172 CVNSLIAYGGNIDHKISHLGTPL 194
Score = 30.5 bits (70), Expect = 0.48
Identities = 6/23 (26%), Positives = 9/23 (39%)
Query: 16 IACFLAGNGADLSIKNKKGQTPL 38
L +GA ++ TPL
Sbjct: 107 CVKILLKHGAQVNGVTADWHTPL 129
Score = 30.5 bits (70), Expect = 0.58
Identities = 5/23 (21%), Positives = 8/23 (34%)
Query: 16 IACFLAGNGADLSIKNKKGQTPL 38
L G ++I +PL
Sbjct: 74 SLRNLISQGWAVNIITADHVSPL 96
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat,
helix, extended loop, four repeat, PR ANK repeat,
disease mutation, metal-binding; 2.00A {Homo sapiens}
SCOP: k.37.1.1
Length = 137
Score = 34.3 bits (80), Expect = 0.013
Identities = 8/25 (32%), Positives = 10/25 (40%)
Query: 16 IACFLAGNGADLSIKNKKGQTPLDL 40
I L GA + N G P+D
Sbjct: 91 IVKLLLSYGASRNAVNIFGLRPVDY 115
Score = 31.6 bits (73), Expect = 0.099
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 16 IACFLAGNGADLSIKNKKGQTPL 38
+L NG+D ++K+ G TPL
Sbjct: 25 SVEYLLQNGSDPNVKDHAGWTPL 47
Score = 30.1 bits (69), Expect = 0.37
Identities = 4/23 (17%), Positives = 10/23 (43%)
Query: 16 IACFLAGNGADLSIKNKKGQTPL 38
+ L + A ++ + +PL
Sbjct: 58 VVELLLQHKALVNTTGYQNDSPL 80
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid
herpesvirus 1} SCOP: g.44.1.1
Length = 68
Score = 32.8 bits (75), Expect = 0.013
Identities = 14/49 (28%), Positives = 20/49 (40%), Gaps = 6/49 (12%)
Query: 243 EQTMCPVCLDRLKNMIFL--CGHGTCQMCGD----RMSECPICRKAVEK 285
CP+CL+ N C H C +C + CP+C+ VE
Sbjct: 4 VAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVES 52
Score = 25.8 bits (57), Expect = 4.7
Identities = 13/50 (26%), Positives = 20/50 (40%), Gaps = 4/50 (8%)
Query: 79 DECRIC-SDLKRDILFQPCGHV---ACCSVCAPRVKKCLICREPVEKRIK 124
+ C IC D + PC H C + + C +C+ PVE +
Sbjct: 6 ERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVESVVH 55
>2etb_A Transient receptor potential cation channel subfamily V member 2;
TRPV2, ankyrin repeat domain, transport protein; 1.65A
{Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Length = 256
Score = 35.5 bits (82), Expect = 0.013
Identities = 7/24 (29%), Positives = 9/24 (37%)
Query: 15 SIACFLAGNGADLSIKNKKGQTPL 38
+ L I N +G TPL
Sbjct: 202 QMGARLCPTVQLEEISNHQGLTPL 225
Score = 26.7 bits (59), Expect = 9.9
Identities = 5/17 (29%), Positives = 6/17 (35%)
Query: 22 GNGADLSIKNKKGQTPL 38
A L + G T L
Sbjct: 160 HQPASLEATDSLGNTVL 176
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats,
metal binding protein; 2.10A {Mus musculus} SCOP:
d.211.1.1 g.45.1.1
Length = 278
Score = 35.4 bits (81), Expect = 0.014
Identities = 10/34 (29%), Positives = 15/34 (44%)
Query: 8 ADKKSSASIACFLAGNGADLSIKNKKGQTPLDLC 41
+A L A + I N+ G+TPLD+
Sbjct: 212 CCLTDNAECLKLLLRGKASIEIANESGETPLDIA 245
Score = 30.0 bits (67), Expect = 0.85
Identities = 11/35 (31%), Positives = 16/35 (45%)
Query: 7 AADKKSSASIACFLAGNGADLSIKNKKGQTPLDLC 41
+ ++S I FL N +L + KG T L C
Sbjct: 178 RSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYC 212
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats,
A-helical domain, structural genomics, NPPSFA; 2.20A
{Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A
1ixv_A 1wg0_A
Length = 228
Score = 35.1 bits (82), Expect = 0.014
Identities = 7/32 (21%), Positives = 13/32 (40%)
Query: 7 AADKKSSASIACFLAGNGADLSIKNKKGQTPL 38
A + + L + L K++ G+ PL
Sbjct: 9 ACMENEFFKVQELLHSKPSLLLQKDQDGRIPL 40
Score = 34.0 bits (79), Expect = 0.035
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 16 IACFLAGNGADLSIKNKKGQTPL 38
++ FL NGA + IK+K Q PL
Sbjct: 122 VSQFLIENGASVRIKDKFNQIPL 144
Score = 31.6 bits (73), Expect = 0.17
Identities = 7/44 (15%), Positives = 16/44 (36%)
Query: 7 AADKKSSASIACFLAGNGADLSIKNKKGQTPLDLCPDPNLCKAL 50
A + + + GA+ + + KG D+ + + K
Sbjct: 181 ALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNEQVKKFF 224
Score = 28.6 bits (65), Expect = 1.9
Identities = 5/17 (29%), Positives = 7/17 (41%)
Query: 22 GNGADLSIKNKKGQTPL 38
DL+ +G T L
Sbjct: 95 PLKPDLNKITNQGVTCL 111
Score = 26.3 bits (59), Expect = 10.0
Identities = 8/24 (33%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Query: 16 IACFLAGNG-ADLSIKNKKGQTPL 38
+ L G G + ++ ++K+G TPL
Sbjct: 155 LIELLCGLGKSAVNWQDKQGWTPL 178
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription
regulation, autoantibody; 2.58A {Homo sapiens}
Length = 261
Score = 35.1 bits (82), Expect = 0.015
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 7 AADKKSSASIACFLAGNGADLSIKNKKGQTPLDL 40
A + +S +AC L GAD KN +G+ P++L
Sbjct: 172 AVARTASEELACLLMDFGADTQAKNAEGKRPVEL 205
Score = 33.6 bits (78), Expect = 0.061
Identities = 2/25 (8%), Positives = 4/25 (16%)
Query: 16 IACFLAGNGADLSIKNKKGQTPLDL 40
+A S+
Sbjct: 212 LAQLFLEREGPPSLMQLCRLRIRKC 236
Score = 32.0 bits (74), Expect = 0.15
Identities = 6/23 (26%), Positives = 8/23 (34%)
Query: 16 IACFLAGNGADLSIKNKKGQTPL 38
L G ++ K TPL
Sbjct: 116 CVNSLIAYGGNIDHKISHLGTPL 138
Score = 30.9 bits (71), Expect = 0.42
Identities = 6/23 (26%), Positives = 9/23 (39%)
Query: 16 IACFLAGNGADLSIKNKKGQTPL 38
L +GA ++ TPL
Sbjct: 51 CVKILLKHGAQVNGVTADWHTPL 73
Score = 29.7 bits (68), Expect = 0.81
Identities = 5/23 (21%), Positives = 8/23 (34%)
Query: 16 IACFLAGNGADLSIKNKKGQTPL 38
L G ++I +PL
Sbjct: 18 SLRNLISQGWAVNIITADHVSPL 40
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding;
HET: SUC; 1.50A {Homo sapiens}
Length = 64
Score = 32.4 bits (74), Expect = 0.015
Identities = 14/56 (25%), Positives = 21/56 (37%), Gaps = 12/56 (21%)
Query: 243 EQTMCPVCLDRLKNMIFL--------CGHGTCQMC----GDRMSECPICRKAVEKR 286
CP+C+D ++ CGH C C + CP CRK + +
Sbjct: 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHK 57
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 63
Score = 32.4 bits (74), Expect = 0.019
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 8/50 (16%)
Query: 238 LQDIKEQTMCPVCLDRLKNMIFL-CGHGTCQMC-------GDRMSECPIC 279
+ ++E+ +CP+CLD L+ + + CGH C C +CP+C
Sbjct: 14 VNKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63
>2rfa_A Transient receptor potential cation channel subfa member 6;
TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium
transport, calmodulin-binding; 1.70A {Mus musculus}
Length = 232
Score = 34.9 bits (81), Expect = 0.020
Identities = 7/32 (21%), Positives = 15/32 (46%)
Query: 7 AADKKSSASIACFLAGNGADLSIKNKKGQTPL 38
AA + +++ L G ++ + G+T L
Sbjct: 10 AAKENDVQALSKLLKFEGCEVHQRGAMGETAL 41
Score = 31.8 bits (73), Expect = 0.19
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 16 IACFLAGNGADLSIKNKKGQTPL 38
I L +GAD+ ++ G T L
Sbjct: 136 IVRLLIEHGADIRAQDSLGNTVL 158
Score = 26.8 bits (60), Expect = 8.0
Identities = 7/28 (25%), Positives = 10/28 (35%), Gaps = 5/28 (17%)
Query: 16 IACFLAGNGADLSI-----KNKKGQTPL 38
A L +L + +GQT L
Sbjct: 52 AAMVLMEAAPELVFEPMTSELYEGQTAL 79
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium,
SGC, metal binding protein; 2.06A {Homo sapiens}
Length = 301
Score = 35.0 bits (80), Expect = 0.024
Identities = 8/33 (24%), Positives = 13/33 (39%)
Query: 8 ADKKSSASIACFLAGNGADLSIKNKKGQTPLDL 40
A + L A + N+ G+T LD+
Sbjct: 233 AALYNQPDCLKLLLKGRALVGTVNEAGETALDI 265
Score = 34.6 bits (79), Expect = 0.028
Identities = 9/35 (25%), Positives = 13/35 (37%)
Query: 7 AADKKSSASIACFLAGNGADLSIKNKKGQTPLDLC 41
++S + F+ NG L K G T L
Sbjct: 199 KVANQASLPLVDFIIQNGGHLDAKAADGNTALHYA 233
>1awc_B Protein (GA binding protein beta 1); complex (transcription
regulation/DNA), DNA-binding, nuclear protein, ETS
domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus
musculus} SCOP: d.211.1.1
Length = 153
Score = 33.9 bits (79), Expect = 0.024
Identities = 7/25 (28%), Positives = 13/25 (52%)
Query: 16 IACFLAGNGADLSIKNKKGQTPLDL 40
+ L GAD+ ++K +T D+
Sbjct: 115 VVELLIKYGADVHTQSKFCKTAFDI 139
Score = 32.0 bits (74), Expect = 0.089
Identities = 6/23 (26%), Positives = 8/23 (34%)
Query: 16 IACFLAGNGADLSIKNKKGQTPL 38
L G + K +TPL
Sbjct: 49 TTEVLLRAGVSRDARTKVDRTPL 71
Score = 30.8 bits (71), Expect = 0.28
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 16 IACFLAGNGADLSIKNKKGQTPL 38
I L +GAD++ K+ T L
Sbjct: 82 IVEVLLKHGADVNAKDMLKMTAL 104
Score = 27.4 bits (62), Expect = 3.4
Identities = 9/32 (28%), Positives = 13/32 (40%), Gaps = 2/32 (6%)
Query: 7 AADKKSSASIACFLAGNGADLSIKNKKGQTPL 38
AA + L NGA + + G +PL
Sbjct: 9 AA-RAGQDDEVRILMANGAPFT-TDWLGTSPL 38
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor,
cytoplasm, phosphorylation, P53 binding protein, ANK
repeat, SH3 domain; 2.10A {Homo sapiens}
Length = 229
Score = 34.5 bits (80), Expect = 0.024
Identities = 6/23 (26%), Positives = 9/23 (39%)
Query: 16 IACFLAGNGADLSIKNKKGQTPL 38
+ D S N++G T L
Sbjct: 36 VVQQAVKEMNDPSQPNEEGITAL 58
Score = 32.2 bits (74), Expect = 0.15
Identities = 7/27 (25%), Positives = 10/27 (37%), Gaps = 1/27 (3%)
Query: 16 IACFLAGNGADLSIKNKK-GQTPLDLC 41
I L +GA + G T + C
Sbjct: 102 ICMALVQHGAAIFATTLSDGATAFEKC 128
Score = 31.1 bits (71), Expect = 0.35
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 16 IACFLAGNGADLSIKNKKGQTPL 38
I FL GA+++ + G TPL
Sbjct: 69 IVDFLITAGANVNSPDSHGWTPL 91
Score = 29.9 bits (68), Expect = 0.80
Identities = 6/32 (18%), Positives = 11/32 (34%)
Query: 7 AADKKSSASIACFLAGNGADLSIKNKKGQTPL 38
++ A A +LA + + N L
Sbjct: 129 DPYREGYADCATYLADVEQSMGLMNSGAVYAL 160
Score = 28.0 bits (63), Expect = 3.0
Identities = 3/20 (15%), Positives = 7/20 (35%)
Query: 19 FLAGNGADLSIKNKKGQTPL 38
F G + ++ +T
Sbjct: 173 FREGESVTVLRRDGPEETDW 192
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo
protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Length = 110
Score = 32.9 bits (76), Expect = 0.025
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 16 IACFLAGNGADLSIKNKKGQTPL 38
L NGAD++ K+K G TPL
Sbjct: 39 EVRILMANGADVAAKDKNGSTPL 61
Score = 27.2 bits (61), Expect = 2.8
Identities = 3/20 (15%), Positives = 4/20 (20%), Gaps = 3/20 (15%)
Query: 19 FLAGNGADLSIKNKKGQTPL 38
L G+ L
Sbjct: 12 GLVPRGSH---MGSDLGKKL 28
Score = 26.8 bits (60), Expect = 3.9
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 16 IACFLAGNGADLSIKNKKGQTPLDL 40
+ L GAD+ ++K G+T D+
Sbjct: 72 VVKLLLEAGADVXAQDKFGKTAFDI 96
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6
ATPase, P-benzoyl-L-phenylalanine, PBPA, amber
suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A
2dwz_A* 1tr4_A 1uoh_A 1qym_A
Length = 231
Score = 34.5 bits (79), Expect = 0.027
Identities = 3/32 (9%), Positives = 11/32 (34%)
Query: 7 AADKKSSASIACFLAGNGADLSIKNKKGQTPL 38
A + + + + + ++ +T L
Sbjct: 13 LAYSGKLDELKERILADKSLATRTDQDSRTAL 44
Score = 32.5 bits (74), Expect = 0.10
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 16 IACFLAGNGADLSIKNKKGQTPL 38
I FL G ++ K+ G +PL
Sbjct: 55 IVEFLLQLGVPVNDKDDAGWSPL 77
Score = 27.9 bits (62), Expect = 3.4
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 8 ADKKSSASIACFLAGNGADLSIKNKKGQTPLDL 40
A + A FL GA + I+NK+ +TPL +
Sbjct: 179 ACDEERVEEAKFLVTQGASIYIENKEEKTPLQV 211
Score = 27.1 bits (60), Expect = 5.6
Identities = 11/38 (28%), Positives = 17/38 (44%)
Query: 8 ADKKSSASIACFLAGNGADLSIKNKKGQTPLDLCPDPN 45
A K + + L A +I++ +G TPL L D
Sbjct: 146 AAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEE 183
Score = 26.8 bits (59), Expect = 7.0
Identities = 9/31 (29%), Positives = 13/31 (41%)
Query: 8 ADKKSSASIACFLAGNGADLSIKNKKGQTPL 38
A K+ IA L GA+ K+ T +
Sbjct: 113 AASKNRHEIAVMLLEGGANPDAKDHYDATAM 143
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription
factors, ikappab proteins; 1.86A {Homo sapiens} SCOP:
d.211.1.1 PDB: 1k1b_A
Length = 241
Score = 34.4 bits (80), Expect = 0.027
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 16 IACFLAGNGADLSIKNKKGQTPLDL 40
+ L +GAD S+KN TPL +
Sbjct: 198 LVRTLVRSGADSSLKNCHNDTPLMV 222
Score = 32.8 bits (76), Expect = 0.086
Identities = 8/31 (25%), Positives = 12/31 (38%)
Query: 8 ADKKSSASIACFLAGNGADLSIKNKKGQTPL 38
A + S+ L GA ++ GQT
Sbjct: 53 AVITTLPSVVRLLVTAGASPMALDRHGQTAA 83
Score = 31.7 bits (73), Expect = 0.23
Identities = 8/31 (25%), Positives = 17/31 (54%)
Query: 8 ADKKSSASIACFLAGNGADLSIKNKKGQTPL 38
A + +S S+ L +GA+++ + G + L
Sbjct: 157 AVENNSLSMVQLLLQHGANVNAQMYSGSSAL 187
Score = 31.3 bits (72), Expect = 0.26
Identities = 8/20 (40%), Positives = 9/20 (45%)
Query: 19 FLAGNGADLSIKNKKGQTPL 38
G +L I N QTPL
Sbjct: 31 LFQQGGRELDIYNNLRQTPL 50
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase,
ubiquitylation, sumoylation, zinc-FI metal binding
protein; 1.80A {Rattus norvegicus}
Length = 71
Score = 32.1 bits (73), Expect = 0.027
Identities = 14/52 (26%), Positives = 21/52 (40%), Gaps = 12/52 (23%)
Query: 247 CPVCLDRLKNMIFL--------CGHGTCQMC----GDRMSECPICRKAVEKR 286
CP+C+D ++ CGH C C + CP CRK + +
Sbjct: 13 CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHK 64
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping,
inhibition, prote binding, actin capping, actin-binding,
cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A
2kxp_C 2myo_A
Length = 123
Score = 33.1 bits (77), Expect = 0.030
Identities = 7/25 (28%), Positives = 10/25 (40%)
Query: 16 IACFLAGNGADLSIKNKKGQTPLDL 40
L GAD ++K G T +
Sbjct: 88 CVKLLLSKGADKTVKGPDGLTAFEA 112
Score = 30.1 bits (69), Expect = 0.32
Identities = 5/20 (25%), Positives = 9/20 (45%)
Query: 19 FLAGNGADLSIKNKKGQTPL 38
G D++ + G+ PL
Sbjct: 25 DYVAKGEDVNRTLEGGRKPL 44
Score = 30.1 bits (69), Expect = 0.35
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 16 IACFLAGNGADLSIKNKKGQTPL 38
I FL GAD++ +K TPL
Sbjct: 55 ILEFLLLKGADINAPDKHHITPL 77
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium,
SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo
sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Length = 167
Score = 33.5 bits (78), Expect = 0.032
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 16 IACFLAGNGADLSIKNKKGQTPLDL 40
L +GAD +I+ G +DL
Sbjct: 117 CVKMLLESGADPTIETDSGYNSMDL 141
Score = 32.4 bits (75), Expect = 0.080
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 16 IACFLAGNGADLSIKNKKGQTPL 38
+ FL NGAD + K ++ L
Sbjct: 51 VVEFLLQNGADPQLLGKGRESAL 73
Score = 32.0 bits (74), Expect = 0.13
Identities = 4/23 (17%), Positives = 9/23 (39%)
Query: 16 IACFLAGNGADLSIKNKKGQTPL 38
++ +++G TPL
Sbjct: 18 YLATRIEQENVINHTDEEGFTPL 40
Score = 31.2 bits (72), Expect = 0.20
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 16 IACFLAGNGADLSIKNKKGQTPL 38
I L G D++ + G TPL
Sbjct: 84 IVKMLLDCGVDVNEYDWNGGTPL 106
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats,
methyllyine binding, huntingti interacting protein 14,
acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo
sapiens}
Length = 240
Score = 33.9 bits (79), Expect = 0.034
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 16 IACFLAGNGADLSIKNKKGQTPLDL 40
+ L GA++ +N KG++ LDL
Sbjct: 192 VISLLLEAGANVDAQNIKGESALDL 216
Score = 31.6 bits (73), Expect = 0.22
Identities = 8/32 (25%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 7 AADKKSSASIACFLAGNGADLSIKNKKGQTPL 38
A ++ S+ L GAD S+ + +G + +
Sbjct: 83 AT-RQGHLSMVVQLMKYGADPSLIDGEGCSCI 113
Score = 31.6 bits (73), Expect = 0.24
Identities = 7/33 (21%), Positives = 12/33 (36%), Gaps = 1/33 (3%)
Query: 7 AADKKSSASIACFLAGNGADLSIKNKK-GQTPL 38
AA + S L +++ +K T L
Sbjct: 149 AAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTAL 181
Score = 30.5 bits (70), Expect = 0.45
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 16 IACFLAGNGADLSIKNKKGQTPL 38
I +L G D+ + ++ G TPL
Sbjct: 124 IVAYLIAKGQDVDMMDQNGMTPL 146
Score = 29.7 bits (68), Expect = 0.82
Identities = 6/23 (26%), Positives = 9/23 (39%)
Query: 16 IACFLAGNGADLSIKNKKGQTPL 38
L G D+ +K+ T L
Sbjct: 24 RCRELVEAGYDVRQPDKENVTLL 46
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 81
Score = 32.1 bits (73), Expect = 0.036
Identities = 10/44 (22%), Positives = 16/44 (36%), Gaps = 5/44 (11%)
Query: 247 CPVCLDRLKN-MIFLCGHGTCQMC----GDRMSECPICRKAVEK 285
C +C +N ++ C H C+ C C IC +
Sbjct: 18 CFICRQAFQNPVVTKCRHYFCESCALEHFRATPRCYICDQPTGG 61
Score = 28.3 bits (63), Expect = 0.66
Identities = 15/59 (25%), Positives = 22/59 (37%), Gaps = 5/59 (8%)
Query: 67 GEGDGTEDMVTLDECRICSDLKRDILFQPCGHVACCSVCAPRV----KKCLICREPVEK 121
G G+E+ C IC ++ + C H C CA +C IC +P
Sbjct: 4 GSSGGSEEEEIPFRCFICRQAFQNPVVTKCRHYF-CESCALEHFRATPRCYICDQPTGG 61
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene
family, nuclear protein, phosphorylation, disease
mutation, polymorphism; 2.20A {Homo sapiens} SCOP:
b.34.2.1 d.211.1.1 PDB: 4a63_B
Length = 239
Score = 33.7 bits (78), Expect = 0.038
Identities = 6/23 (26%), Positives = 10/23 (43%)
Query: 16 IACFLAGNGADLSIKNKKGQTPL 38
+ + D S+ N +G T L
Sbjct: 52 LVQRIIYEVDDPSLPNDEGITAL 74
Score = 32.6 bits (75), Expect = 0.096
Identities = 7/32 (21%), Positives = 11/32 (34%)
Query: 7 AADKKSSASIACFLAGNGADLSIKNKKGQTPL 38
++ + FL G + I NK L
Sbjct: 145 EEMEEGYTQCSQFLYGVQEKMGIMNKGVIYAL 176
Score = 29.9 bits (68), Expect = 0.70
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 16 IACFLAGNGADLSIKNKKGQTPL 38
I FL G +++ + G TPL
Sbjct: 85 IVKFLVQFGVNVNAADSDGWTPL 107
Score = 28.0 bits (63), Expect = 3.0
Identities = 8/27 (29%), Positives = 11/27 (40%), Gaps = 1/27 (3%)
Query: 16 IACFLAGNGADLSIKNKK-GQTPLDLC 41
+ FL +GA + QT D C
Sbjct: 118 VCKFLVESGAAVFAMTYSDMQTAADKC 144
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat,
alternative splicing, ANK repeat, chromatin regulator,
nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP:
k.37.1.1 PDB: 3b95_A*
Length = 237
Score = 33.9 bits (79), Expect = 0.040
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 16 IACFLAGNGADLSIKNKKGQTPLDL 40
+D+++KNK+G+TPL
Sbjct: 192 CVVLFLSRDSDVTLKNKEGETPLQC 216
Score = 32.8 bits (76), Expect = 0.079
Identities = 9/23 (39%), Positives = 10/23 (43%)
Query: 16 IACFLAGNGADLSIKNKKGQTPL 38
IA L DL N G +PL
Sbjct: 159 IAEILLAAKCDLHAVNIHGDSPL 181
Score = 32.4 bits (75), Expect = 0.12
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 16 IACFLAGNGADLSIKNKKGQTPL 38
+L GA + K+ +G T L
Sbjct: 59 AVKYLIKAGALVDPKDAEGSTCL 81
Score = 31.6 bits (73), Expect = 0.24
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 16 IACFLAGNGADLSIKNKKGQTPL 38
I L GA++ ++ +TPL
Sbjct: 26 ICHMLVQAGANIDTCSEDQRTPL 48
Score = 31.2 bits (72), Expect = 0.32
Identities = 5/23 (21%), Positives = 12/23 (52%)
Query: 16 IACFLAGNGADLSIKNKKGQTPL 38
+ L G+D++I++ + L
Sbjct: 126 LVKLLLSKGSDINIRDNEENICL 148
Score = 26.6 bits (60), Expect = 8.6
Identities = 7/24 (29%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
Query: 16 IACFLAGNGA-DLSIKNKKGQTPL 38
+ +L NG D++ ++ G TP+
Sbjct: 92 VVQYLLSNGQMDVNCQDDGGWTPM 115
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT
signaling, POL ribosylation, transferase-signaling
protein complex; 2.00A {Mus musculus}
Length = 351
Score = 34.0 bits (79), Expect = 0.041
Identities = 7/25 (28%), Positives = 11/25 (44%)
Query: 16 IACFLAGNGADLSIKNKKGQTPLDL 40
L G+D SI + +G T +
Sbjct: 295 TCRLLLSYGSDPSIISLQGFTAAQM 319
Score = 33.6 bits (78), Expect = 0.061
Identities = 6/33 (18%), Positives = 12/33 (36%)
Query: 6 QAADKKSSASIACFLAGNGADLSIKNKKGQTPL 38
+AA + + L + + + TPL
Sbjct: 30 EAARSGNEEKLMALLTPLNVNCHASDGRKSTPL 62
Score = 33.6 bits (78), Expect = 0.065
Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 7 AADKKSSASIACFLAGNGADLSIKNKKGQTPLDLCPDPN 45
AA K+ + L +GAD ++ N G++ +D+ P P
Sbjct: 131 AA-SKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPE 168
Score = 32.9 bits (76), Expect = 0.12
Identities = 9/32 (28%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 7 AADKKSSASIACFLAGNGADLSIKNKKGQTPL 38
AA +++ + L +GA ++ + GQT L
Sbjct: 254 AA-ERAHNDVMEVLHKHGAKMNALDSLGQTAL 284
Score = 32.5 bits (75), Expect = 0.16
Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 7 AADKKSSASIACFLAGNGADLSIKNKKGQTPL 38
AA + I L +GAD+ K+K G PL
Sbjct: 65 AA-GYNRVRIVQLLLQHGADVHAKDKGGLVPL 95
Score = 32.1 bits (74), Expect = 0.20
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 16 IACFLAGNGADLSIKNKKGQTPL 38
+A L GA+++ KNK TPL
Sbjct: 229 VAELLLRKGANVNEKNKDFMTPL 251
Score = 30.9 bits (71), Expect = 0.38
Identities = 6/23 (26%), Positives = 11/23 (47%)
Query: 16 IACFLAGNGADLSIKNKKGQTPL 38
+ L +GA ++ + TPL
Sbjct: 106 VTELLLKHGACVNAMDLWQFTPL 128
Score = 27.5 bits (62), Expect = 5.5
Identities = 5/23 (21%), Positives = 8/23 (34%)
Query: 16 IACFLAGNGADLSIKNKKGQTPL 38
A LA A + + + L
Sbjct: 6 SALDLADPSAKAVLTGEYKKDEL 28
Score = 27.1 bits (61), Expect = 7.3
Identities = 8/33 (24%), Positives = 13/33 (39%), Gaps = 1/33 (3%)
Query: 6 QAADKKSSASIACFLAGNGADLSIKNKKGQTPL 38
QAA + A + LA + + +T L
Sbjct: 184 QAAREADLAKVKKTLA-LEIINFKQPQSHETAL 215
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing
protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1,
linkers, alternat splicing; HET: GDP; 3.38A {Homo
sapiens} PDB: 3lvr_E*
Length = 497
Score = 34.1 bits (78), Expect = 0.042
Identities = 9/31 (29%), Positives = 13/31 (41%)
Query: 11 KSSASIACFLAGNGADLSIKNKKGQTPLDLC 41
++S + F+ NG L K G T L
Sbjct: 184 QASLPLVDFIIQNGGHLDAKAADGNTALHYA 214
Score = 27.9 bits (62), Expect = 3.9
Identities = 11/74 (14%), Positives = 22/74 (29%), Gaps = 7/74 (9%)
Query: 8 ADKKSSASIACFLAGNGADLSIKNKKGQTPLDLCPDPN-------LCKALTKCYKDKEVD 60
A + L A + N+ G+T LD+ + L +A +
Sbjct: 214 AALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAGTFAFPLHV 273
Query: 61 QIEPRVGEGDGTED 74
+ + + D
Sbjct: 274 DYSWVISTENLSSD 287
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase,
cyclin dependent kinase inhibitory protein, CDK, cell
cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A
1dc2_A 2a5e_A
Length = 156
Score = 33.2 bits (77), Expect = 0.042
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 16 IACFLAGNGADLSIKNKKGQTPLDL 40
L GA L +++ G+ P+DL
Sbjct: 93 TLVVLHRAGARLDVRDAWGRLPVDL 117
Score = 30.5 bits (70), Expect = 0.33
Identities = 6/20 (30%), Positives = 10/20 (50%)
Query: 19 FLAGNGADLSIKNKKGQTPL 38
L GA+ + N G+ P+
Sbjct: 30 ALLEAGANPNAPNSYGRRPI 49
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat,
chromodomain, aromatic CAGE, signal recognit particle,
protein targeting; 3.18A {Arabidopsis thaliana} PDB:
1x3q_A 2hug_A
Length = 244
Score = 33.7 bits (78), Expect = 0.043
Identities = 10/34 (29%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 7 AADKKSSASIACFLAGNGADLSIKNKKGQTPLDL 40
AA + L GAD+ +++++G T L+L
Sbjct: 118 AA-GYVRPEVVEALVELGADIEVEDERGLTALEL 150
Score = 27.2 bits (61), Expect = 6.0
Identities = 4/15 (26%), Positives = 8/15 (53%)
Query: 24 GADLSIKNKKGQTPL 38
D+ ++ G+T L
Sbjct: 67 DRDVDAVDENGRTAL 81
Score = 27.2 bits (61), Expect = 6.4
Identities = 5/32 (15%), Positives = 10/32 (31%), Gaps = 3/32 (9%)
Query: 7 AADKKSSASIACFLAGNGADLSIKNKKGQTPL 38
K + + AD+ + +TP
Sbjct: 21 IEWKDGHSPSWVPSSYIAADV---VSEYETPW 49
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP:
k.37.1.1
Length = 126
Score = 32.7 bits (76), Expect = 0.045
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 16 IACFLAGNGADLSIKNKKGQTPL 38
+ L GAD++ K+K G+TPL
Sbjct: 83 VVKLLLEAGADVNAKDKNGRTPL 105
Score = 31.5 bits (73), Expect = 0.10
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 16 IACFLAGNGADLSIKNKKGQTPL 38
+ L GAD++ K+K G+TPL
Sbjct: 50 VVKLLLEAGADVNAKDKNGRTPL 72
Score = 31.5 bits (73), Expect = 0.10
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 16 IACFLAGNGADLSIKNKKGQTPL 38
+ L GAD++ K+K G+TPL
Sbjct: 17 VVKLLLEAGADVNAKDKNGRTPL 39
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural
genomics of pathogenic protozoa consortium, SGPP, ANK
repeat; 2.90A {Leishmania major}
Length = 364
Score = 34.1 bits (79), Expect = 0.046
Identities = 5/34 (14%), Positives = 8/34 (23%)
Query: 7 AADKKSSASIACFLAGNGADLSIKNKKGQTPLDL 40
AA S + L ++ G
Sbjct: 296 AAADPSKQEVLQLLQEKLDEVVRSLNTGAGGAVK 329
Score = 33.7 bits (78), Expect = 0.061
Identities = 6/32 (18%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 7 AADKKSSASIACFLAGNGADLSIKNKKGQTPL 38
A + +A G D+++++ + PL
Sbjct: 218 AI-LINWEDVAMRFVEMGIDVNMEDNEHTVPL 248
Score = 33.3 bits (77), Expect = 0.068
Identities = 3/33 (9%), Positives = 12/33 (36%)
Query: 8 ADKKSSASIACFLAGNGADLSIKNKKGQTPLDL 40
KK++ ++ A + +++ +
Sbjct: 330 RKKKAAPAVKRMKLAPSAPVRTRSRSRARSSAV 362
Score = 32.9 bits (76), Expect = 0.10
Identities = 7/23 (30%), Positives = 10/23 (43%)
Query: 16 IACFLAGNGADLSIKNKKGQTPL 38
L G +I+N+ G T L
Sbjct: 35 EVRRLIETGVSPTIQNRFGCTAL 57
Score = 32.5 bits (75), Expect = 0.14
Identities = 8/32 (25%), Positives = 12/32 (37%)
Query: 7 AADKKSSASIACFLAGNGADLSIKNKKGQTPL 38
+ L GA + K+K +TPL
Sbjct: 146 VGLGPEYLEMIKILVQLGASPTAKDKADETPL 177
Score = 31.8 bits (73), Expect = 0.24
Identities = 5/23 (21%), Positives = 10/23 (43%)
Query: 16 IACFLAGNGADLSIKNKKGQTPL 38
+ + + L NK+G + L
Sbjct: 193 MDTVPSKSSLRLDYANKQGNSHL 215
Score = 27.1 bits (61), Expect = 7.1
Identities = 8/38 (21%), Positives = 13/38 (34%), Gaps = 4/38 (10%)
Query: 5 SQAADKKSS----ASIACFLAGNGADLSIKNKKGQTPL 38
A ++ + N +K+ KGQT L
Sbjct: 105 EGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTAL 142
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate
recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo
sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A
3twq_A 3twu_A 2y0i_S*
Length = 165
Score = 33.1 bits (77), Expect = 0.047
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 16 IACFLAGNGADLSIKNKKGQTPLDL 40
I L +GAD + KN+ G TPLDL
Sbjct: 123 ICKLLLQHGADPTKKNRDGNTPLDL 147
Score = 30.8 bits (71), Expect = 0.27
Identities = 7/23 (30%), Positives = 13/23 (56%)
Query: 16 IACFLAGNGADLSIKNKKGQTPL 38
+A L +GA +++ + TPL
Sbjct: 90 VAELLVKHGAVVNVADLWKFTPL 112
Score = 30.8 bits (71), Expect = 0.31
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 16 IACFLAGNGADLSIKNKKGQTPL 38
+ +L +GAD+ K+K G PL
Sbjct: 57 VVEYLLQHGADVHAKDKGGLVPL 79
Score = 27.7 bits (63), Expect = 3.0
Identities = 5/32 (15%), Positives = 9/32 (28%)
Query: 7 AADKKSSASIACFLAGNGADLSIKNKKGQTPL 38
AA ++ + + TPL
Sbjct: 15 AAKAGDVETVKKLCTVQSVNCRDIEGRQSTPL 46
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix,
ankyrin repeat, gene regulation/signalling protein/DNA
complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Length = 373
Score = 33.8 bits (78), Expect = 0.048
Identities = 5/25 (20%), Positives = 9/25 (36%)
Query: 16 IACFLAGNGADLSIKNKKGQTPLDL 40
+ +L GA + + T L
Sbjct: 328 VVMYLIQQGASVEAVDATDHTARQL 352
Score = 33.4 bits (77), Expect = 0.068
Identities = 9/32 (28%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 7 AADKKSSASIACFLAGNGADLSIKNKKGQTPL 38
A + +L GAD +I NK ++ L
Sbjct: 173 AV-LARRRRLVAYLMKAGADPTIYNKSERSAL 203
Score = 32.2 bits (74), Expect = 0.16
Identities = 3/31 (9%), Positives = 7/31 (22%)
Query: 8 ADKKSSASIACFLAGNGADLSIKNKKGQTPL 38
+ + F N + + L
Sbjct: 68 GYGNGNDFLGDFNHTNLQIPTEPEPESPIKL 98
Score = 31.8 bits (73), Expect = 0.24
Identities = 6/32 (18%), Positives = 16/32 (50%)
Query: 7 AADKKSSASIACFLAGNGADLSIKNKKGQTPL 38
AA + + + G++ +++ G+TP+
Sbjct: 286 AAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPI 317
Score = 31.1 bits (71), Expect = 0.37
Identities = 7/25 (28%), Positives = 10/25 (40%)
Query: 14 ASIACFLAGNGADLSIKNKKGQTPL 38
A GAD++ + TPL
Sbjct: 146 VHEAKECIAAGADVNAMDCDENTPL 170
Score = 28.0 bits (63), Expect = 4.0
Identities = 4/15 (26%), Positives = 7/15 (46%)
Query: 24 GADLSIKNKKGQTPL 38
D+ ++ G T L
Sbjct: 225 KGDIEELDRNGMTAL 239
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin
repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A
1ymp_A
Length = 223
Score = 33.5 bits (78), Expect = 0.050
Identities = 6/25 (24%), Positives = 11/25 (44%)
Query: 16 IACFLAGNGADLSIKNKKGQTPLDL 40
A L + A+ I + + P D+
Sbjct: 173 TAKVLLDHFANRDITDHMDRLPRDI 197
Score = 33.5 bits (78), Expect = 0.054
Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 7 AADKKSSASIACFLAGNGADLSIKNKKGQTPL 38
AA + S + A L AD +I++ G+TPL
Sbjct: 32 AA-RYSRSDAAKRLLEASADANIQDNMGRTPL 62
Score = 31.6 bits (73), Expect = 0.19
Identities = 5/23 (21%), Positives = 12/23 (52%)
Query: 16 IACFLAGNGADLSIKNKKGQTPL 38
+ L + AD++ + G++ L
Sbjct: 107 MLEDLINSHADVNAVDDLGKSAL 129
Score = 31.2 bits (72), Expect = 0.26
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 16 IACFLAGNGADLSIKNKKGQTPL 38
A L NGA+ ++N + +TPL
Sbjct: 140 AAVVLLKNGANKDMQNNREETPL 162
Score = 28.5 bits (65), Expect = 1.8
Identities = 6/27 (22%), Positives = 12/27 (44%), Gaps = 1/27 (3%)
Query: 13 SASIACFLAGNGADLS-IKNKKGQTPL 38
+ ++ GA L ++ G+T L
Sbjct: 3 APAVISDFIYQGASLHNQTDRTGETAL 29
Score = 28.5 bits (65), Expect = 2.2
Identities = 10/33 (30%), Positives = 13/33 (39%), Gaps = 2/33 (6%)
Query: 7 AADKKSSASIACFLAGNGA-DLSIKNKKGQTPL 38
A + + L N A DL + G TPL
Sbjct: 65 AV-SADAQGVFQILIRNRATDLDARMHDGTTPL 96
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin
repeat, signaling protein; NMR {Mus musculus} SCOP:
i.11.1.1
Length = 136
Score = 32.8 bits (76), Expect = 0.051
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 16 IACFLAGNGADLSIKNKKGQTPLDL 40
L GA L + + G+ P+DL
Sbjct: 93 TLVVLHRAGARLDVCDAWGRLPVDL 117
Score = 32.0 bits (74), Expect = 0.080
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 16 IACFLAGNGADLSIKNKKGQTPL 38
L GAD + N+ G+ P+
Sbjct: 27 TVRQLLEAGADPNALNRFGRRPI 49
Score = 27.0 bits (61), Expect = 4.5
Identities = 1/15 (6%), Positives = 3/15 (20%)
Query: 24 GADLSIKNKKGQTPL 38
+ + L
Sbjct: 2 SPGIHMLGGSSDAGL 16
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP:
k.37.1.1
Length = 93
Score = 31.6 bits (73), Expect = 0.055
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 16 IACFLAGNGADLSIKNKKGQTPL 38
+ L GAD++ K+K G+TPL
Sbjct: 17 VVKLLLEAGADVNAKDKNGRTPL 39
Score = 31.6 bits (73), Expect = 0.062
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 16 IACFLAGNGADLSIKNKKGQTPL 38
+ L GAD++ K+K G+TPL
Sbjct: 50 VVKLLLEAGADVNAKDKNGRTPL 72
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell
cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A
2f8x_K 3nbn_B 3v79_K* 1ot8_A
Length = 253
Score = 33.6 bits (78), Expect = 0.056
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 16 IACFLAGNGADLSIKNKKGQTPL 38
A L NGA+ ++N + +TPL
Sbjct: 172 AAVVLLKNGANKDMQNNREETPL 194
Score = 33.2 bits (77), Expect = 0.071
Identities = 6/25 (24%), Positives = 11/25 (44%)
Query: 16 IACFLAGNGADLSIKNKKGQTPLDL 40
A L + A+ I + + P D+
Sbjct: 205 TAKVLLDHFANRDITDHMDRLPRDI 229
Score = 33.2 bits (77), Expect = 0.076
Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 7 AADKKSSASIACFLAGNGADLSIKNKKGQTPL 38
AA + S + A L AD +I++ G+TPL
Sbjct: 64 AA-RYSRSDAAKRLLEASADANIQDNMGRTPL 94
Score = 32.8 bits (76), Expect = 0.081
Identities = 5/23 (21%), Positives = 12/23 (52%)
Query: 16 IACFLAGNGADLSIKNKKGQTPL 38
+ L + AD++ + G++ L
Sbjct: 139 MLEDLINSHADVNAVDDLGKSAL 161
Score = 30.5 bits (70), Expect = 0.57
Identities = 6/33 (18%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 7 AADKKSSASIACFLAGNGADLS-IKNKKGQTPL 38
+ +++ + ++ GA L ++ G+T L
Sbjct: 29 SEEEEDAPAVISDFIYQGASLHNQTDRTGETAL 61
Score = 27.0 bits (61), Expect = 7.1
Identities = 9/24 (37%), Positives = 11/24 (45%), Gaps = 1/24 (4%)
Query: 16 IACFLAGNGA-DLSIKNKKGQTPL 38
+ L N A DL + G TPL
Sbjct: 105 VFQILIRNRATDLDARMHDGTTPL 128
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin
repeat Pro ribosome display, apoptosis; 1.80A {Synthetic
source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D*
3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B*
2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Length = 169
Score = 32.7 bits (76), Expect = 0.059
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 16 IACFLAGNGADLSIKNKKGQTPLDL 40
I L NGAD++ ++K G+T D+
Sbjct: 128 IVEVLLKNGADVNAQDKFGKTAFDI 152
Score = 32.7 bits (76), Expect = 0.071
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 16 IACFLAGNGADLSIKNKKGQTPL 38
I L NGAD++ + +G TPL
Sbjct: 95 IVEVLLKNGADVNANDMEGHTPL 117
Score = 31.9 bits (74), Expect = 0.12
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 16 IACFLAGNGADLSIKNKKGQTPL 38
I L NGAD++ + G TPL
Sbjct: 62 IVEVLLKNGADVNAVDHAGMTPL 84
Score = 31.9 bits (74), Expect = 0.13
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 16 IACFLAGNGADLSIKNKKGQTPL 38
L NGAD++ ++ G TPL
Sbjct: 29 EVRILMANGADVNAEDASGWTPL 51
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV;
NMR {Escherichia coli}
Length = 115
Score = 32.0 bits (74), Expect = 0.059
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 16 IACFLAGNGADLSIKNKKGQTPL 38
L GAD++ ++K G TPL
Sbjct: 24 EVKKLLSKGADVNARSKDGNTPL 46
Score = 31.6 bits (73), Expect = 0.090
Identities = 5/23 (21%), Positives = 9/23 (39%)
Query: 16 IACFLAGNGADLSIKNKKGQTPL 38
I L GAD++ ++
Sbjct: 90 IVKLLDAKGADVNARSWGSSHHH 112
Score = 31.2 bits (72), Expect = 0.12
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 16 IACFLAGNGADLSIKNKKGQTPL 38
I L GAD++ ++K G TP
Sbjct: 57 IVKLLLAKGADVNARSKDGNTPE 79
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A
{Enterococcus faecalis}
Length = 201
Score = 33.2 bits (77), Expect = 0.060
Identities = 7/32 (21%), Positives = 15/32 (46%)
Query: 7 AADKKSSASIACFLAGNGADLSIKNKKGQTPL 38
AA+++ + + L + + +G TPL
Sbjct: 12 AANQRDTKKVKEILQDTTYQVDEVDTEGNTPL 43
Score = 30.9 bits (71), Expect = 0.29
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 16 IACFLAGNGADLSIKNKKGQTPL 38
I L NGAD SIK+ G+T +
Sbjct: 160 IVKLLMENGADQSIKDNSGRTAM 182
Score = 30.9 bits (71), Expect = 0.36
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 16 IACFLAGNGADLSIKNKKGQTPL 38
IA L GAD++++N +P
Sbjct: 54 IAKALIDRGADINLQNSISDSPY 76
Score = 27.4 bits (62), Expect = 4.0
Identities = 6/24 (25%), Positives = 11/24 (45%), Gaps = 1/24 (4%)
Query: 16 IACFLAGNGA-DLSIKNKKGQTPL 38
I ++ + DL+ N+ G L
Sbjct: 87 ILAYMLKHATPDLNKHNRYGGNAL 110
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional
control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Length = 78
Score = 31.2 bits (70), Expect = 0.061
Identities = 15/62 (24%), Positives = 26/62 (41%), Gaps = 10/62 (16%)
Query: 239 QDIKEQTMCPVCLDRLKN-----MIFLCGHGTCQMCGDRMSE-----CPICRKAVEKRIL 288
++ CP+C++ L+ CG+ C+ C R+ CP CRK +
Sbjct: 6 DAKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDPA 65
Query: 289 LY 290
+Y
Sbjct: 66 VY 67
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 69
Score = 31.0 bits (70), Expect = 0.072
Identities = 14/52 (26%), Positives = 21/52 (40%), Gaps = 12/52 (23%)
Query: 247 CPVCLDRLKNMIFL--------CGHGTCQMC----GDRMSECPICRKAVEKR 286
CP+C+D ++ CGH C C + CP CRK + +
Sbjct: 18 CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHK 69
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A
{Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A
1blx_B
Length = 156
Score = 32.4 bits (75), Expect = 0.073
Identities = 7/32 (21%), Positives = 11/32 (34%)
Query: 7 AADKKSSASIACFLAGNGADLSIKNKKGQTPL 38
AA + + L N+ G+T L
Sbjct: 9 AAARGDVQEVRRLLHRELVHPDALNRFGKTAL 40
Score = 32.0 bits (74), Expect = 0.10
Identities = 7/23 (30%), Positives = 13/23 (56%)
Query: 16 IACFLAGNGADLSIKNKKGQTPL 38
IA L GA ++++ G +P+
Sbjct: 50 IALELLKQGASPNVQDTSGTSPV 72
Score = 31.6 bits (73), Expect = 0.13
Identities = 6/23 (26%), Positives = 12/23 (52%)
Query: 16 IACFLAGNGADLSIKNKKGQTPL 38
L +GAD+++ + G P+
Sbjct: 83 TLKVLVEHGADVNVPDGTGALPI 105
Score = 29.3 bits (67), Expect = 0.85
Identities = 7/18 (38%), Positives = 12/18 (66%)
Query: 23 NGADLSIKNKKGQTPLDL 40
+DL ++ +G TPL+L
Sbjct: 122 AESDLHRRDARGLTPLEL 139
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A;
1.80A {Homo sapiens} SCOP: d.211.1.1
Length = 285
Score = 33.2 bits (77), Expect = 0.078
Identities = 10/34 (29%), Positives = 21/34 (61%)
Query: 5 SQAADKKSSASIACFLAGNGADLSIKNKKGQTPL 38
++D +I L +GAD++++ ++G+TPL
Sbjct: 190 LLSSDDSDVEAITHLLLDHGADVNVRGERGKTPL 223
Score = 32.4 bits (75), Expect = 0.12
Identities = 7/32 (21%), Positives = 14/32 (43%)
Query: 7 AADKKSSASIACFLAGNGADLSIKNKKGQTPL 38
A +KK + L +++ + G+T L
Sbjct: 226 AVEKKHLGLVQRLLEQEHIEINDTDSDGKTAL 257
Score = 32.4 bits (75), Expect = 0.12
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 16 IACFLAGNGADLSIKNKKGQTPL 38
I L +GAD ++ K G TP
Sbjct: 54 IVELLLRHGADPVLRKKNGATPF 76
Score = 31.7 bits (73), Expect = 0.25
Identities = 5/23 (21%), Positives = 9/23 (39%)
Query: 16 IACFLAGNGADLSIKNKKGQTPL 38
+ GAD++ + G T
Sbjct: 87 LLKLFLSKGADVNECDFYGFTAF 109
Score = 29.7 bits (68), Expect = 0.99
Identities = 9/32 (28%), Positives = 15/32 (46%)
Query: 7 AADKKSSASIACFLAGNGADLSIKNKKGQTPL 38
AA+K + L GAD++ + G+ L
Sbjct: 155 AAEKGHVEVLKILLDEMGADVNACDNMGRNAL 186
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system,
signal sequence, ankyrin repeat, chromodomain, type I
turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2
k.37.1.1 PDB: 3dep_A 1x32_A
Length = 183
Score = 32.5 bits (75), Expect = 0.080
Identities = 8/25 (32%), Positives = 16/25 (64%)
Query: 16 IACFLAGNGADLSIKNKKGQTPLDL 40
+ L GAD+ +++++G T L+L
Sbjct: 125 VVEALVELGADIEVEDERGLTALEL 149
Score = 28.2 bits (64), Expect = 2.2
Identities = 5/32 (15%), Positives = 9/32 (28%), Gaps = 3/32 (9%)
Query: 7 AADKKSSASIACFLAGNGADLSIKNKKGQTPL 38
K + + AD + +TP
Sbjct: 20 IEWKDGHSPSWVPSSYIAAD---VVSEYETPW 48
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein,
human epidermal growth factor receptor 2, de novo
protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G
2v4h_C
Length = 136
Score = 32.0 bits (74), Expect = 0.080
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 16 IACFLAGNGADLSIKNKKGQTPL 38
IA L +GAD++ ++K G+T
Sbjct: 95 IAEVLLKHGADVNAQDKFGKTAF 117
Score = 31.6 bits (73), Expect = 0.11
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 16 IACFLAGNGADLSIKNKKGQTPL 38
I L NGAD++ + G TPL
Sbjct: 62 IVEVLLKNGADVNAVDAIGFTPL 84
Score = 30.4 bits (70), Expect = 0.25
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 16 IACFLAGNGADLSIKNKKGQTPL 38
L NGAD++ K++ G TPL
Sbjct: 29 EVRILMANGADVNAKDEYGLTPL 51
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 33.3 bits (75), Expect = 0.091
Identities = 6/58 (10%), Positives = 19/58 (32%), Gaps = 14/58 (24%)
Query: 43 DPNLCKALTKCYKD-----KEVDQIEPRV-----GEGDGTEDMVTLDECRICSDLKRD 90
+P + K + I + + ++ MV +++ S +++
Sbjct: 367 EPAEYR---KMFDRLSVFPPSAH-IPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQ 420
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein;
2.70A {Homo sapiens} SCOP: d.211.1.1
Length = 437
Score = 33.2 bits (77), Expect = 0.096
Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 6 QAADKKSSASIACFLAGNGADLSIKNKKGQTPLDL 40
QAA + + I L NGA + + G TPL +
Sbjct: 350 QAAQQGHTD-IVTLLLKNGASPNEVSSDGTTPLAI 383
Score = 32.9 bits (76), Expect = 0.12
Identities = 8/23 (34%), Positives = 9/23 (39%)
Query: 16 IACFLAGNGADLSIKNKKGQTPL 38
L A + KKG TPL
Sbjct: 128 TVLALLEKEASQACMTKKGFTPL 150
Score = 32.5 bits (75), Expect = 0.14
Identities = 11/34 (32%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 7 AADKKSSASIACFLAGNGADLSIKNKKGQTPLDL 40
AA K++ +A L G + ++ +G TPL L
Sbjct: 219 AA-KQNQVEVARSLLQYGGSANAESVQGVTPLHL 251
Score = 31.7 bits (73), Expect = 0.25
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 16 IACFLAGNGADLSIKNKKGQTPL 38
+ FL + AD++ K K G +PL
Sbjct: 326 LVKFLLQHQADVNAKTKLGYSPL 348
Score = 31.7 bits (73), Expect = 0.26
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 16 IACFLAGNGADLSIKNKKGQTPL 38
+A L +G + + G TPL
Sbjct: 293 VADVLIKHGVMVDATTRMGYTPL 315
Score = 31.7 bits (73), Expect = 0.29
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 16 IACFLAGNGADLSIKNKKGQTPL 38
+A +L N A ++ K K QTPL
Sbjct: 62 VAKYLLQNKAKVNAKAKDDQTPL 84
Score = 31.3 bits (72), Expect = 0.33
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 16 IACFLAGNGADLSIKNKKGQTPL 38
+ L A+ ++ NK G TPL
Sbjct: 260 MVALLLSKQANGNLGNKSGLTPL 282
Score = 31.3 bits (72), Expect = 0.35
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 16 IACFLAGNGADLSIKNKKGQTPL 38
+ L N A+ ++ G TPL
Sbjct: 95 MVKLLLENNANPNLATTAGHTPL 117
Score = 30.9 bits (71), Expect = 0.44
Identities = 7/23 (30%), Positives = 7/23 (30%)
Query: 16 IACFLAGNGADLSIKNKKGQTPL 38
I L G G TPL
Sbjct: 194 IVKLLLPRGGSPHSPAWNGYTPL 216
Score = 30.9 bits (71), Expect = 0.51
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 16 IACFLAGNGADLSIKNKKGQTPL 38
I L GA ++ N K +TPL
Sbjct: 29 IVKNLLQRGASPNVSNVKVETPL 51
Score = 30.5 bits (70), Expect = 0.58
Identities = 8/23 (34%), Positives = 10/23 (43%)
Query: 16 IACFLAGNGADLSIKNKKGQTPL 38
+A L A + K G TPL
Sbjct: 161 VAELLLERDAHPNAAGKNGLTPL 183
Score = 27.5 bits (62), Expect = 5.1
Identities = 5/16 (31%), Positives = 6/16 (37%)
Query: 23 NGADLSIKNKKGQTPL 38
G + G TPL
Sbjct: 3 PGISGGGGGESGLTPL 18
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha,
coiled coil, cytoplasm, metal- binding, UBL conjugation,
UBL conjugation pathway; 2.10A {Homo sapiens} PDB:
3hcu_A 2eci_A 2jmd_A
Length = 118
Score = 31.3 bits (71), Expect = 0.10
Identities = 14/56 (25%), Positives = 26/56 (46%), Gaps = 6/56 (10%)
Query: 239 QDIKEQTMCPVCLDRLKN-MIFLCGHGTCQMC-----GDRMSECPICRKAVEKRIL 288
++ + CP+CL L+ + CGH C+ C D +CP+ + + + L
Sbjct: 13 PPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQL 68
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA
damage, chromatin regulator, chromosomal protein, DNA
repair, metal-binding; 2.12A {Homo sapiens}
Length = 115
Score = 31.4 bits (71), Expect = 0.11
Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 6/47 (12%)
Query: 243 EQTMCPVCLDRLKNMIFL-CGHGTCQMCGDRMSE-----CPICRKAV 283
+ C +C++ L + L C H C+ C E CP CR+ V
Sbjct: 14 SECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRV 60
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC,
rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens}
PDB: 3uxg_A
Length = 172
Score = 32.0 bits (74), Expect = 0.11
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 19 FLAGNGADLSIKNKKGQTPLDL 40
L GADL+ + G TP+DL
Sbjct: 120 ALLARGADLTTEADSGYTPMDL 141
Score = 31.6 bits (73), Expect = 0.17
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 19 FLAGNGADLSIKNKKGQTPL 38
FL GAD I K+ ++ L
Sbjct: 54 FLLEWGADPHILAKERESAL 73
Score = 31.2 bits (72), Expect = 0.19
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 16 IACFLAGNGADLSIKNKKGQTPL 38
I L D++I + G TPL
Sbjct: 84 IVGLLLERDVDINIYDWNGGTPL 106
Score = 30.1 bits (69), Expect = 0.52
Identities = 3/19 (15%), Positives = 5/19 (26%)
Query: 19 FLAGNGADLSIKNKKGQTP 37
+ + L N P
Sbjct: 153 VIENHILKLFQSNLVPADP 171
Score = 26.6 bits (60), Expect = 6.4
Identities = 6/24 (25%), Positives = 11/24 (45%), Gaps = 1/24 (4%)
Query: 16 IACFLAGNGADL-SIKNKKGQTPL 38
G +L + +++G TPL
Sbjct: 17 QLKEHLRKGDNLVNKPDERGFTPL 40
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1;
RCHY1, ring domain, zinc-binding domain, structural
genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Length = 55
Score = 29.9 bits (68), Expect = 0.12
Identities = 12/49 (24%), Positives = 21/49 (42%), Gaps = 9/49 (18%)
Query: 244 QTMCPVCLDRLKN-----MIFLCGHGTCQMCGDRMSE----CPICRKAV 283
+ CP+CL+ + + CGH + C + M + CP+C
Sbjct: 5 SSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPS 53
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle
inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A
{Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A
1mx2_A 1mx6_A
Length = 162
Score = 31.6 bits (73), Expect = 0.13
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 16 IACFLAGNGADLSIKNKKGQTPL 38
L AD++I++ +G PL
Sbjct: 85 TLQTLLEFQADVNIEDNEGNLPL 107
Score = 30.4 bits (70), Expect = 0.33
Identities = 6/23 (26%), Positives = 11/23 (47%)
Query: 16 IACFLAGNGADLSIKNKKGQTPL 38
L N +++ +N G+T L
Sbjct: 20 QLTSLLQNNVNVNAQNGFGRTAL 42
Score = 30.4 bits (70), Expect = 0.38
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 16 IACFLAGNGADLSIKNKKGQTPL 38
IA L GA+ +K++ G +
Sbjct: 52 IARRLLLRGANPDLKDRTGFAVI 74
Score = 27.7 bits (63), Expect = 2.7
Identities = 9/26 (34%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Query: 16 IACFLAGNGA-DLSIKNKKGQTPLDL 40
+ FL + A ++ +N KG T DL
Sbjct: 118 VVEFLVKHTASNVGHRNHKGDTACDL 143
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing
protein 1; arfgap domain, zinc-binding module, GTPase
activ metal-binding, nitration; 2.30A {Homo sapiens}
Length = 368
Score = 32.4 bits (73), Expect = 0.16
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 8 ADKKSSASIACFLAGNGADLSIKNKKGQTPLDL 40
A +AC GADL ++ +G+ PL +
Sbjct: 275 ATILGHTGLACLFLKRGADLGARDSEGRDPLTI 307
Score = 32.4 bits (73), Expect = 0.17
Identities = 10/36 (27%), Positives = 16/36 (44%)
Query: 6 QAADKKSSASIACFLAGNGADLSIKNKKGQTPLDLC 41
A +S FL NGA+++ + G+ PL
Sbjct: 240 IQATAANSLLACEFLLQNGANVNQADSAGRGPLHHA 275
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha,
coiled coil, cytoplasm, metal- binding, UBL conjugation,
UBL conjugation pathway; 2.20A {Homo sapiens}
Length = 170
Score = 31.6 bits (71), Expect = 0.18
Identities = 21/105 (20%), Positives = 33/105 (31%), Gaps = 14/105 (13%)
Query: 80 ECRICSDLKRDILFQPCGHVACCS----VCAPRVKKCLICREPVE----------KRIKI 125
EC IC R+ + PCGH C + KC + E + KR +
Sbjct: 20 ECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREIL 79
Query: 126 EECMVCSLKKASVLFKPCYHMVACESCASLMKKCVQCRTQIDHMH 170
+ C + + + C + C QC+ H
Sbjct: 80 SLMVKCPNEGCLHKMELRHLEDHQAHCEFALMDCPQCQRPFQKFH 124
Score = 27.4 bits (60), Expect = 4.9
Identities = 13/57 (22%), Positives = 25/57 (43%), Gaps = 6/57 (10%)
Query: 239 QDIKEQTMCPVCLDRLKNMIFL-CGHGTCQMCGDRMSE-----CPICRKAVEKRILL 289
++ + CP+CL L+ + CGH C+ C + CP+ + + + L
Sbjct: 13 PPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLF 69
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Length = 285
Score = 31.3 bits (72), Expect = 0.28
Identities = 11/32 (34%), Positives = 13/32 (40%), Gaps = 1/32 (3%)
Query: 7 AADKKSSASIACFLAGNGADLSIKNKKGQTPL 38
AA I L +G D S + KG T L
Sbjct: 69 AA-TLEDTKIVKILLFSGLDDSQFDDKGNTAL 99
Score = 30.6 bits (70), Expect = 0.58
Identities = 6/37 (16%), Positives = 12/37 (32%), Gaps = 2/37 (5%)
Query: 2 GLGSQAADKKSSASIACFLAGNGADLSIKNKKGQTPL 38
G+ + S + FL + D + G +
Sbjct: 1 GMDLSRINTWKSKQLKSFL--SSKDTFKADVHGHSAS 35
Score = 29.4 bits (67), Expect = 1.1
Identities = 3/23 (13%), Positives = 5/23 (21%)
Query: 16 IACFLAGNGADLSIKNKKGQTPL 38
+ L + N P
Sbjct: 176 MMILLLDYMTSTNTNNSLLFIPD 198
Score = 27.9 bits (63), Expect = 3.4
Identities = 4/24 (16%), Positives = 5/24 (20%), Gaps = 1/24 (4%)
Query: 16 IACFLAGNGADLSIKNKKG-QTPL 38
L K G +T
Sbjct: 110 TVKLFVKKNWRLMFYGKTGWKTSF 133
Score = 27.9 bits (63), Expect = 3.8
Identities = 2/23 (8%), Positives = 6/23 (26%)
Query: 16 IACFLAGNGADLSIKNKKGQTPL 38
IA + + + +
Sbjct: 236 IAKMIIEKHVEYKSDSYTKDLDI 258
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein
binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Length = 192
Score = 30.8 bits (71), Expect = 0.32
Identities = 9/23 (39%), Positives = 18/23 (78%)
Query: 16 IACFLAGNGADLSIKNKKGQTPL 38
++ FL +GA+++ +N +G+TPL
Sbjct: 116 MSYFLLEHGANVNDRNLEGETPL 138
Score = 30.4 bits (70), Expect = 0.48
Identities = 8/25 (32%), Positives = 11/25 (44%)
Query: 16 IACFLAGNGADLSIKNKKGQTPLDL 40
I L GAD+S ++ G T
Sbjct: 149 IVKKLLELGADISARDLTGLTAEAS 173
Score = 30.1 bits (69), Expect = 0.55
Identities = 7/23 (30%), Positives = 9/23 (39%)
Query: 16 IACFLAGNGADLSIKNKKGQTPL 38
L N L K+ +G T L
Sbjct: 50 AIDKLVENFDKLEDKDIEGSTAL 72
Score = 30.1 bits (69), Expect = 0.63
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 16 IACFLAGNGADLSIKNKKGQTPL 38
IA L G++++ K+ G+TPL
Sbjct: 83 IAEKLLSKGSNVNTKDFSGKTPL 105
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 31.6 bits (71), Expect = 0.36
Identities = 26/173 (15%), Positives = 45/173 (26%), Gaps = 61/173 (35%)
Query: 14 ASIACFLAGNGADLSIKNKKGQTPLD-------------LCPDPNLCKA--LTKCYKD-- 56
A F DL KG P D L A ++ +
Sbjct: 1739 MEKAAF-----EDLK---SKGLIPADATFAGHSLGEYAALA-----SLADVMS--IESLV 1783
Query: 57 -------KEVDQIEPRVGEGDGTEDMVTLDECRICSDLKRDILFQPCGHVACCS------ 103
+ PR G M+ ++ R+ + ++ L V +
Sbjct: 1784 EVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEI 1843
Query: 104 ----------VCAPRVKK----CLICREPVEKRIKIEECMVC-SLKK-ASVLF 140
V A ++ + ++I I E SL++ LF
Sbjct: 1844 VNYNVENQQYVAAGDLRALDTVTNVLNFIKLQKIDIIELQKSLSLEEVEGHLF 1896
>3p1v_A Metallo-endopeptidase; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-biology; HET: MSE; 1.93A {Bacteroides ovatus atcc
8483} PDB: 4df9_A*
Length = 407
Score = 31.2 bits (70), Expect = 0.45
Identities = 9/26 (34%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Query: 266 CQMCGDRMSE-CPICRKAVEKRILLY 290
C+M + E CP+C++A+ + I Y
Sbjct: 380 CRMKTNEYPEFCPVCQRAIRRMIEFY 405
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative
splicing, apoptosis, cytoplasm, metal-binding, UBL
conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Length = 141
Score = 29.3 bits (65), Expect = 0.68
Identities = 10/54 (18%), Positives = 16/54 (29%), Gaps = 6/54 (11%)
Query: 239 QDIKEQTMCPVCLDRLKN-MIFLCGHGTCQMC-----GDRMSECPICRKAVEKR 286
++ + +C C + L+ CGH C C C C
Sbjct: 26 TKLEAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSSGPQNCAACVHEGIYE 79
Score = 26.6 bits (58), Expect = 6.0
Identities = 11/48 (22%), Positives = 14/48 (29%), Gaps = 6/48 (12%)
Query: 80 ECRICSDLKRDILFQPCGHVACCSVCAPR-----VKKCLICREPVEKR 122
C C ++ R CGH CS C + C C
Sbjct: 33 LCSACRNVLRRPFQAQCGHR-YCSFCLASILSSGPQNCAACVHEGIYE 79
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of
EIF4E, cytoplasm, HOST-virus interaction, lipoprotein,
membrane; NMR {Lassa virus josiah}
Length = 99
Score = 28.6 bits (63), Expect = 0.81
Identities = 10/47 (21%), Positives = 18/47 (38%), Gaps = 4/47 (8%)
Query: 247 CPVCLDRLKNMIFLCGHGTCQMCGDRM----SECPICRKAVEKRILL 289
C C K ++ H C C + + CPIC+ + ++
Sbjct: 31 CKSCWFENKGLVECNNHYLCLNCLTLLLSVSNRCPICKMPLPTKLRP 77
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1,
ankyrin repeat domain, transport protein; HET: ATP;
2.70A {Rattus norvegicus} PDB: 2nyj_A*
Length = 273
Score = 29.8 bits (67), Expect = 0.82
Identities = 8/24 (33%), Positives = 10/24 (41%)
Query: 15 SIACFLAGNGADLSIKNKKGQTPL 38
+ L I N+KG TPL
Sbjct: 214 ILGAKLHPTLKLEEITNRKGLTPL 237
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc
binuclear cluster, zinc finger, DNA-binding protein;
2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Length = 116
Score = 28.3 bits (63), Expect = 1.3
Identities = 12/54 (22%), Positives = 18/54 (33%), Gaps = 6/54 (11%)
Query: 239 QDIKEQTMCPVCLDRLKN-MIFLCGHGTCQMC-----GDRMSECPICRKAVEKR 286
+ C +C L + + C H C++C S CP CR
Sbjct: 18 AHFVKSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPT 71
>3euh_A Protein KICB, chromosome partition protein MUKF; chromosome
condensation, condensin, non-SMC subunit, kleisin,
calcium, cell cycle, cell division; 2.90A {Escherichia
coli} PDB: 3rpu_A
Length = 440
Score = 29.6 bits (66), Expect = 1.4
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Query: 214 TSGALMNNGSRDTSTSDIQKLQQQLQDIKEQTMCPVCLDRLKNMIF 259
TSG L +DT + KLQ L I++ TM L + ++F
Sbjct: 211 TSGTL--RELQDTLEAAGDKLQANLLRIQDATMTHDDLHFVDRLVF 254
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 74
Score = 27.0 bits (60), Expect = 1.7
Identities = 13/57 (22%), Positives = 24/57 (42%), Gaps = 8/57 (14%)
Query: 237 QLQDIKEQTMCPVCLDRLKN----MIFLCGHGTCQMCGDR----MSECPICRKAVEK 285
+++++ +C VCL+ K I C H + C + CP+C V +
Sbjct: 8 KVKELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQ 64
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding,
metal-binding, phosphoprotein, exchange factor, RAC,
GTPase, membrane domain; 1.85A {Mus musculus} PDB:
3bji_A 1f5x_A
Length = 406
Score = 29.0 bits (65), Expect = 2.0
Identities = 10/47 (21%), Positives = 16/47 (34%), Gaps = 6/47 (12%)
Query: 237 QLQDIKEQTMCPVCLDRLKNMIF------LCGHGTCQMCGDRMSECP 277
Q+ +E T C C L+ + C + C R+ C
Sbjct: 350 QMFSFEETTSCKACQMLLRGTFYQGYRCYRCRAPAHKECLGRVPPCG 396
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics,
PSI, protein structure initiative; 2.80A {Legionella
pneumophila} SCOP: a.118.24.1
Length = 376
Score = 28.4 bits (63), Expect = 2.8
Identities = 2/23 (8%), Positives = 6/23 (26%)
Query: 16 IACFLAGNGADLSIKNKKGQTPL 38
C L + + + +
Sbjct: 110 TLCLLLTSDEIVKVIQAENYQAF 132
Score = 27.2 bits (60), Expect = 7.6
Identities = 2/23 (8%), Positives = 5/23 (21%)
Query: 16 IACFLAGNGADLSIKNKKGQTPL 38
++ A + L
Sbjct: 301 LSIPGIKALAPTATIPGDANELL 323
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring
E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A
{Saccharomyces cerevisiae}
Length = 371
Score = 28.4 bits (62), Expect = 2.8
Identities = 17/132 (12%), Positives = 44/132 (33%), Gaps = 25/132 (18%)
Query: 171 PMVVCCGGPGIISEVQHTTDPAEEENAVALSPNTSAATLVEASTSGALMNNG--SRDTST 228
P + + E+ + E + + + L+E ++ + + +
Sbjct: 173 PHLKPYTQQNNV-ELIYAFTTKEYKLFGYIVEMITPEQLLEK-----VLQHPKIIKQATL 226
Query: 229 SDIQKLQQQLQDIKEQTM-------CPVCLDRLKN--MIFLCGHGTC-------QMCGDR 272
++K ++ +++ T CP+ R+K C H C
Sbjct: 227 LYLKKTLREDEEMGLTTTSTIMSLQCPISYTRMKYPSKSINCKHLQCFDALWFLHSQLQI 286
Query: 273 MS-ECPICRKAV 283
+ +CP+C+ +
Sbjct: 287 PTWQCPVCQIDI 298
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid
binding, KIAA1227 protein, structural genomics; NMR
{Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Length = 107
Score = 27.2 bits (59), Expect = 3.1
Identities = 9/57 (15%), Positives = 19/57 (33%), Gaps = 2/57 (3%)
Query: 225 DTSTSDIQKLQQQLQDIKEQTMCPVCLDRLKNMIFLCGHGTCQMCGDRMSECPICRK 281
+ S + + + + +CP C R + H + C + C C +
Sbjct: 23 NAKLSSLLEQGSHERLCRNAAVCPYCSLRFFSPELKQEHES--KCEYKKLTCLECMR 77
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex,
chimera; 2.21A {Rattus norvegicus}
Length = 133
Score = 26.7 bits (58), Expect = 5.6
Identities = 14/57 (24%), Positives = 21/57 (36%), Gaps = 12/57 (21%)
Query: 242 KEQTMCPVCLDRLKNMIFL--------CGHGTCQMC----GDRMSECPICRKAVEKR 286
CP+C+D ++ CGH C C + CP CRK + +
Sbjct: 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHK 61
Score = 26.3 bits (57), Expect = 8.7
Identities = 24/120 (20%), Positives = 33/120 (27%), Gaps = 30/120 (25%)
Query: 80 ECRICSDLKRDILFQ-------PCGHVAC------------------CSVCAPRVKKCLI 114
C IC D +I+ CGHV C + R I
Sbjct: 9 SCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPIYI 68
Query: 115 CREPVEKRIKIEECMVCSLKKASVLFKPCYHMVACESCASL----MKKCVQCRTQIDHMH 170
V I ++ ++ C H V C C C CR +I+H
Sbjct: 69 GSGTVSCPICMDGYSEIVQNGRLIVSTECGH-VFCSQCLRDSLKNANTCPTCRKKINHKR 127
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin
repeats, ANK repeat, ION transport, ionic channel, R
transmembrane, transport; 2.30A {Gallus gallus} PDB:
3jxj_A
Length = 260
Score = 27.1 bits (60), Expect = 6.2
Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 4/35 (11%)
Query: 7 AADKKSSASIACFLAGNG---ADLSIKNKKGQTPL 38
AA + I +L NG ADL ++ +G T L
Sbjct: 147 AA-CTNQPHIVHYLTENGHKQADLRRQDSRGNTVL 180
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.134 0.423
Gapped
Lambda K H
0.267 0.0436 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,165,979
Number of extensions: 247905
Number of successful extensions: 1168
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1062
Number of HSP's successfully gapped: 363
Length of query: 290
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 197
Effective length of database: 4,105,140
Effective search space: 808712580
Effective search space used: 808712580
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.5 bits)