RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy7970
(290 letters)
>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 103
Score = 45.4 bits (107), Expect = 4e-07
Identities = 18/72 (25%), Positives = 36/72 (50%), Gaps = 8/72 (11%)
Query: 225 DTSTSDIQKLQQQLQDIKEQTMCPVCLDRLKNMIFL-CGHGTCQMCGDRMSE-------C 276
D S ++++Q + +++ CP+CL+ +K + C H C+ C ++ C
Sbjct: 2 DLSALRVEEVQNVINAMQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQC 61
Query: 277 PICRKAVEKRIL 288
P+C+ + KR L
Sbjct: 62 PLCKNDITKRSL 73
Score = 31.6 bits (71), Expect = 0.026
Identities = 12/49 (24%), Positives = 21/49 (42%), Gaps = 6/49 (12%)
Query: 80 ECRICSDLKRDILFQPCGHVACCSVC------APRVKKCLICREPVEKR 122
EC IC +L ++ + C H+ C +C +C+ + KR
Sbjct: 23 ECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKR 71
>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId:
9606]}
Length = 79
Score = 40.4 bits (94), Expect = 1e-05
Identities = 12/65 (18%), Positives = 24/65 (36%), Gaps = 6/65 (9%)
Query: 232 QKLQQQLQDIKEQTMCPVCLDRLKNMIFL-CGHGTCQMCGD-----RMSECPICRKAVEK 285
++ + + +C +C + K++ CGH C C CP CR ++
Sbjct: 11 EQYELYCEMGSTFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKG 70
Query: 286 RILLY 290
+
Sbjct: 71 TEPIV 75
Score = 37.3 bits (86), Expect = 2e-04
Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
Query: 77 TLDECRICSDLKRDILFQPCGHVACCSVCAP----RVKKCLICREPVEKRIKI 125
T C+IC++ +D+ +PCGH+ C S + C CR ++ I
Sbjct: 22 TFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTEPI 74
Score = 26.5 bits (58), Expect = 1.1
Identities = 14/54 (25%), Positives = 23/54 (42%), Gaps = 4/54 (7%)
Query: 125 IEECMVCSLKKASVLFKPCYHMVACESCASLMK----KCVQCRTQIDHMHPMVV 174
+ C +C+ V +PC H++ S + C CR +I P+VV
Sbjct: 23 FQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTEPIVV 76
>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia
proto-oncoprotein PML {Human (Homo sapiens) [TaxId:
9606]}
Length = 56
Score = 36.8 bits (85), Expect = 1e-04
Identities = 11/47 (23%), Positives = 16/47 (34%)
Query: 73 EDMVTLDECRICSDLKRDILFQPCGHVACCSVCAPRVKKCLICREPV 119
E+ C+ C + PC H C +C IC+ P
Sbjct: 1 EEEFQFLRCQQCQAEAKCPKLLPCLHTLCSGCLEASGMQCPICQAPW 47
Score = 36.0 bits (83), Expect = 3e-04
Identities = 12/47 (25%), Positives = 18/47 (38%), Gaps = 2/47 (4%)
Query: 239 QDIKEQTMCPVCLDRLKNMIFL-CGHGTCQMCGDR-MSECPICRKAV 283
++ + C C K L C H C C + +CPIC+
Sbjct: 1 EEEFQFLRCQQCQAEAKCPKLLPCLHTLCSGCLEASGMQCPICQAPW 47
Score = 26.8 bits (59), Expect = 0.65
Identities = 8/47 (17%), Positives = 15/47 (31%)
Query: 120 EKRIKIEECMVCSLKKASVLFKPCYHMVACESCASLMKKCVQCRTQI 166
E+ + C C + PC H + + +C C+
Sbjct: 1 EEEFQFLRCQQCQAEAKCPKLLPCLHTLCSGCLEASGMQCPICQAPW 47
>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1
(RAG1), dimerization domain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 86
Score = 36.8 bits (85), Expect = 3e-04
Identities = 13/56 (23%), Positives = 19/56 (33%), Gaps = 6/56 (10%)
Query: 239 QDIKEQTMCPVCLDRLKNMIFL-CGHGTCQMC-----GDRMSECPICRKAVEKRIL 288
+ C +C L + + C H C++C S CP CR L
Sbjct: 18 AHFVKSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDL 73
Score = 29.9 bits (67), Expect = 0.091
Identities = 13/58 (22%), Positives = 17/58 (29%), Gaps = 4/58 (6%)
Query: 69 GDGTEDMVTLDECRICSDLKRDILFQPCGHVACCS----VCAPRVKKCLICREPVEKR 122
D V C+IC + D + C H+ C C CR P
Sbjct: 14 VDFPAHFVKSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPT 71
>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 97
Score = 35.1 bits (80), Expect = 0.001
Identities = 13/66 (19%), Positives = 23/66 (34%), Gaps = 4/66 (6%)
Query: 227 STSDIQKLQQQLQDIKEQTMCPVCLDRLKNMIFL--CGHGTCQMCGDRM--SECPICRKA 282
+ L +++ C C + L+ + L C H C C + CP+C
Sbjct: 5 GRGAWAHSRAALDRLEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIGTGCPVCYTP 64
Query: 283 VEKRIL 288
+ L
Sbjct: 65 AWIQDL 70
Score = 24.7 bits (53), Expect = 5.5
Identities = 10/52 (19%), Positives = 22/52 (42%), Gaps = 2/52 (3%)
Query: 73 EDMVTLDECRICSD-LKRDILFQPCGHVACCSVCAPRVK-KCLICREPVEKR 122
+ + L C C++ L+ + C H+ C + + + C +C P +
Sbjct: 17 DRLEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIGTGCPVCYTPAWIQ 68
>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 301
Score = 37.3 bits (85), Expect = 0.001
Identities = 13/32 (40%), Positives = 16/32 (50%)
Query: 8 ADKKSSASIACFLAGNGADLSIKNKKGQTPLD 39
A + + SI L GAD I NK G P+D
Sbjct: 266 AARLGNISIVDALLDYGADPFIANKSGLRPVD 297
>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine
herpesvirus 1 [TaxId: 10326]}
Length = 68
Score = 34.2 bits (78), Expect = 0.002
Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 6/47 (12%)
Query: 247 CPVCLDRLKNMIFL--CGHGTCQMCGDRM----SECPICRKAVEKRI 287
CP+CL+ N C H C +C R CP+C+ VE +
Sbjct: 8 CPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVESVV 54
Score = 30.7 bits (69), Expect = 0.025
Identities = 14/53 (26%), Positives = 21/53 (39%), Gaps = 4/53 (7%)
Query: 79 DECRIC-SDLKRDILFQPCGHV---ACCSVCAPRVKKCLICREPVEKRIKIEE 127
+ C IC D + PC H C + + C +C+ PVE + E
Sbjct: 6 ERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVESVVHTIE 58
>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1,
MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}
Length = 291
Score = 34.3 bits (77), Expect = 0.013
Identities = 10/34 (29%), Positives = 12/34 (35%)
Query: 8 ADKKSSASIACFLAGNGADLSIKNKKGQTPLDLC 41
A L N D+ NK GQT D+
Sbjct: 239 AAHWGKEEACRILVENLCDMEAVNKVGQTAFDVA 272
Score = 25.5 bits (54), Expect = 8.2
Identities = 10/35 (28%), Positives = 12/35 (34%)
Query: 7 AADKKSSASIACFLAGNGADLSIKNKKGQTPLDLC 41
AA L GAD++ N G T L
Sbjct: 46 AACSSGDTEEVLRLLERGADINYANVDGLTALHQA 80
>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId:
9606]}
Length = 408
Score = 33.4 bits (75), Expect = 0.024
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 8 ADKKSSASIACFLAGNGADLSIKNKKGQTPLDL 40
A ++ I L NGA + + G TPL +
Sbjct: 337 AAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAI 369
Score = 29.6 bits (65), Expect = 0.48
Identities = 15/101 (14%), Positives = 26/101 (25%), Gaps = 3/101 (2%)
Query: 8 ADKKSSASIACFLAGNGADLSIKNKKGQTPLDL---CPDPNLCKALTKCYKDKEVDQIEP 64
A + +A +L N A ++ K K QTPL N+ K L + + +
Sbjct: 40 AARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAG 99
Query: 65 RVGEGDGTEDMVTLDECRICSDLKRDILFQPCGHVACCSVC 105
+ + G
Sbjct: 100 HTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAA 140
Score = 28.0 bits (61), Expect = 1.5
Identities = 20/115 (17%), Positives = 31/115 (26%), Gaps = 8/115 (6%)
Query: 7 AADKKSSASIACFLAGNGADLSIKNKKGQTPLDLCPDPNLCKALTKCYKDKEVDQIEPRV 66
A ++ I L G G TPL + N + + E
Sbjct: 171 VAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQ 230
Query: 67 GE-------GDGTEDMVTLDECRICSDLKRDILFQPCGHVACCSVCAPRVKKCLI 114
G +G +MV L + + + H+ P V LI
Sbjct: 231 GVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVP-VADVLI 284
Score = 26.5 bits (57), Expect = 3.9
Identities = 10/31 (32%), Positives = 13/31 (41%)
Query: 8 ADKKSSASIACFLAGNGADLSIKNKKGQTPL 38
A I L GA ++ N K +TPL
Sbjct: 7 ASFMGHLPIVKNLLQRGASPNVSNVKVETPL 37
>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit
10, gankyrin {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 229
Score = 32.5 bits (72), Expect = 0.037
Identities = 6/43 (13%), Positives = 15/43 (34%)
Query: 8 ADKKSSASIACFLAGNGADLSIKNKKGQTPLDLCPDPNLCKAL 50
+ + + GA+ + + KG D+ + + K
Sbjct: 180 LAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNEQVKKFF 222
Score = 28.2 bits (61), Expect = 1.1
Identities = 15/174 (8%), Positives = 36/174 (20%), Gaps = 3/174 (1%)
Query: 6 QAADKKSSASIACFLAGNGADLSIKNKKGQTPLDLCPDPNLCKALTKCYKDKEVDQIEPR 65
QA + + L + L K++ G+ PL + + E ++
Sbjct: 6 QACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDY 65
Query: 66 VGEGDGTEDMVTLDECRICSDLKRDILFQPCGHVACCSVCAPRVKKCLICREPVEKRIKI 125
+ T + + + + + + + I
Sbjct: 66 PDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLI 125
Query: 126 EECMVCSLKKA---SVLFKPCYHMVACESCASLMKKCVQCRTQIDHMHPMVVCC 176
E +K L + Q +
Sbjct: 126 ENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHA 179
>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}
Length = 228
Score = 32.5 bits (72), Expect = 0.045
Identities = 11/35 (31%), Positives = 17/35 (48%)
Query: 6 QAADKKSSASIACFLAGNGADLSIKNKKGQTPLDL 40
+A + + L +GAD S+KN TPL +
Sbjct: 182 HSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMV 216
Score = 27.5 bits (59), Expect = 1.5
Identities = 16/154 (10%), Positives = 32/154 (20%), Gaps = 3/154 (1%)
Query: 19 FLAGNGADLSIKNKKGQTPLDLCPDPNLCKALTKCYKDKEVDQIEPRVGEGDGTEDMVTL 78
G +L I N QTPL L L + R G+
Sbjct: 25 LFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHR 84
Query: 79 DECRICSDLKRDILFQPCGHVACCSVCAPRVKKCLICREPVEKRIKIEECMVCSLKKASV 138
+ + L + + + + +
Sbjct: 85 SPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLL---ERGADIDAVDI 141
Query: 139 LFKPCYHMVACESCASLMKKCVQCRTQIDHMHPM 172
+ A E+ + M + + +
Sbjct: 142 KSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMY 175
>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans
[TaxId: 6239]}
Length = 277
Score = 32.0 bits (71), Expect = 0.057
Identities = 8/49 (16%), Positives = 16/49 (32%), Gaps = 3/49 (6%)
Query: 8 ADKKSSASIACFLAGNGADLSIKNKKGQTPLDL---CPDPNLCKALTKC 53
A ++ + +L GA + + T L N+ +C
Sbjct: 228 AAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDRC 276
>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit
10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}
Length = 223
Score = 31.9 bits (71), Expect = 0.065
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 16 IACFLAGNGADLSIKNKKGQTPLDL 40
A L GA + I+NK+ +TPL +
Sbjct: 184 EAKLLVSQGASIYIENKEEKTPLQV 208
Score = 25.7 bits (55), Expect = 6.8
Identities = 7/30 (23%), Positives = 10/30 (33%)
Query: 16 IACFLAGNGADLSIKNKKGQTPLDLCPDPN 45
IA L GA+ K+ T +
Sbjct: 118 IAVMLLEGGANPDAKDHYEATAMHRAAAKG 147
>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor
I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId:
10090]}
Length = 255
Score = 31.6 bits (70), Expect = 0.077
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 10 KKSSASIACFLAGNGADLSIKNKKGQTPLDL 40
+ +AS+ L GAD + + G+TPL
Sbjct: 201 EAQAASVLELLLKAGADPTARMYGGRTPLGS 231
>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens)
[TaxId: 9606]}
Length = 65
Score = 29.0 bits (64), Expect = 0.12
Identities = 16/55 (29%), Positives = 22/55 (40%), Gaps = 11/55 (20%)
Query: 243 EQTMCPVCLD------RLKNMIFLCGHGTCQMCGDRM-----SECPICRKAVEKR 286
+ CP C LK M+ +CGH C+ C D + CP C + K
Sbjct: 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKS 56
>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa)
[TaxId: 4530]}
Length = 55
Score = 28.7 bits (64), Expect = 0.13
Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 9/52 (17%)
Query: 241 IKEQTMCPVCLDRLKN-----MIFLCGHGTCQMCGDRM----SECPICRKAV 283
+ + C VCL L++ + CGHG C D S CP+CR V
Sbjct: 2 MDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTV 53
>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain
{Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Length = 209
Score = 30.5 bits (67), Expect = 0.16
Identities = 6/25 (24%), Positives = 11/25 (44%)
Query: 16 IACFLAGNGADLSIKNKKGQTPLDL 40
+ L N A+ I + + P D+
Sbjct: 171 ASKALLDNFANREITDHMDRLPRDV 195
>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human
(Homo sapiens) [TaxId: 9606]}
Length = 285
Score = 28.8 bits (63), Expect = 0.68
Identities = 8/34 (23%), Positives = 15/34 (44%)
Query: 7 AADKKSSASIACFLAGNGADLSIKNKKGQTPLDL 40
A +KK + L +++ + G+T L L
Sbjct: 226 AVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLL 259
Score = 27.2 bits (59), Expect = 2.3
Identities = 10/27 (37%), Positives = 18/27 (66%)
Query: 16 IACFLAGNGADLSIKNKKGQTPLDLCP 42
I L +GAD++++ ++G+TPL L
Sbjct: 201 ITHLLLDHGADVNVRGERGKTPLILAV 227
>d1ad3a_ c.82.1.1 (A:) Aldehyde reductase (dehydrogenase), ALDH {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 446
Score = 28.0 bits (61), Expect = 1.3
Identities = 17/136 (12%), Positives = 34/136 (25%), Gaps = 3/136 (2%)
Query: 60 DQIEPRVGEGDGTEDMVTLDECRICSDLKRDILFQPCGHVACCSVCAPRVKKCLICREPV 119
+ P E G +C + +R + C + I + V
Sbjct: 200 KHLTPVTLELGGKSPCYVDKDCDLDVACRRIAWGKFMNSGQTCVAPDYILCDPSIQNQIV 259
Query: 120 EKRIKIEECMVCSLKKASVLFKPCYHMVACESCASLMKKCVQCRTQIDHMHPMVVCCGGP 179
EK K + K + ++ + + P
Sbjct: 260 EKLKKSLKDFYGEDAKQ---SRDYGRIINDRHFQRVKGLIDNQKVAHGGTWDQSSRYIAP 316
Query: 180 GIISEVQHTTDPAEEE 195
I+ +V + +EE
Sbjct: 317 TILVDVDPQSPVMQEE 332
>d2ax3a1 c.72.1.4 (A:212-489) Hypothetical protein TM0922,
C-terminal domain {Thermotoga maritima [TaxId: 2336]}
Length = 278
Score = 27.2 bits (59), Expect = 2.3
Identities = 9/39 (23%), Positives = 22/39 (56%)
Query: 2 GLGSQAADKKSSASIACFLAGNGADLSIKNKKGQTPLDL 40
G +Q +++++ +L G A+L ++++G T +L
Sbjct: 228 GFIAQGLSPLEASTVSVYLHGFAAELFEQDERGLTASEL 266
>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens)
[TaxId: 9606]}
Length = 221
Score = 27.2 bits (58), Expect = 2.4
Identities = 14/147 (9%), Positives = 34/147 (23%)
Query: 16 IACFLAGNGADLSIKNKKGQTPLDLCPDPNLCKALTKCYKDKEVDQIEPRVGEGDGTEDM 75
+ + G+ A L+ +N QTPL L N + ++ G
Sbjct: 21 VIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLAC 80
Query: 76 VTLDECRICSDLKRDILFQPCGHVACCSVCAPRVKKCLICREPVEKRIKIEECMVCSLKK 135
+ + + + + + +
Sbjct: 81 EQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQ 140
Query: 136 ASVLFKPCYHMVACESCASLMKKCVQC 162
+ H+ L+ ++C
Sbjct: 141 EPCNGRTALHLAVDLQNPDLVSLLLKC 167
Score = 26.4 bits (56), Expect = 4.3
Identities = 7/24 (29%), Positives = 11/24 (45%)
Query: 17 ACFLAGNGADLSIKNKKGQTPLDL 40
L GAD++ +G +P L
Sbjct: 161 VSLLLKCGADVNRVTYQGYSPYQL 184
>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 78
Score = 25.4 bits (55), Expect = 2.5
Identities = 7/31 (22%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 240 DIKEQTMCPVCLDRLKN-MIFLCGHGTCQMC 269
+ E CP+ L+ +K+ +I G +
Sbjct: 4 EFPEYFRCPISLELMKDPVIVSTGQTYERSS 34
>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing
protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 80
Score = 25.2 bits (54), Expect = 3.0
Identities = 4/42 (9%), Positives = 12/42 (28%), Gaps = 1/42 (2%)
Query: 240 DIKEQTMCPVCLDRLKN-MIFLCGHGTCQMCGDRMSECPICR 280
DI + + + ++ I G + + +
Sbjct: 3 DIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHF 44
>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 56
Score = 24.3 bits (52), Expect = 4.7
Identities = 3/50 (6%), Positives = 12/50 (24%), Gaps = 6/50 (12%)
Query: 246 MCPVCLDRLKNMIFL--CGHGTCQMC----GDRMSECPICRKAVEKRILL 289
+C + + + + PI + + ++
Sbjct: 2 LCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEEIV 51
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.134 0.423
Gapped
Lambda K H
0.267 0.0510 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,057,901
Number of extensions: 52259
Number of successful extensions: 342
Number of sequences better than 10.0: 1
Number of HSP's gapped: 317
Number of HSP's successfully gapped: 101
Length of query: 290
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 206
Effective length of database: 1,254,276
Effective search space: 258380856
Effective search space used: 258380856
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.3 bits)