BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7971
(276 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2DK3|A Chain A, Solution Structure Of Mib-Herc2 Domain In Hect Domain
Containing Protein 1
Length = 86
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 38/68 (55%), Gaps = 8/68 (11%)
Query: 154 IFPGARVVRGVDWQWEDQDGGNGRRGKVN-EVQDWSAASPRSAAYIVWDNGAKNLYRVGF 212
+ PGARV+RG+DW+W DQDG G V E+ + + WD G N YR+G
Sbjct: 16 MVPGARVIRGLDWKWRDQDGSPQGEGTVTGELHN-------GWIDVTWDAGGSNSYRMGA 68
Query: 213 EGMADLKV 220
EG DLK+
Sbjct: 69 EGKFDLKL 76
>pdb|3DKM|A Chain A, Crystal Structure Of The Hectd1 Cph Domain
Length = 89
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 35/67 (52%), Gaps = 6/67 (8%)
Query: 154 IFPGARVVRGVDWQWEDQDGGNGRRGKVNEVQDWSAASPRSAAYIVWDNGAKNLYRVGFE 213
+ PGARV RG+DW+W DQDG G V + + WD G N YR+G E
Sbjct: 22 MVPGARVTRGLDWKWRDQDGSPQGEGTV------TGELHNGWIDVTWDAGGSNSYRMGAE 75
Query: 214 GMADLKV 220
G DLK+
Sbjct: 76 GKFDLKL 82
>pdb|2DIP|A Chain A, Solution Structure Of The Zz Domain Of Zinc Finger Swim
Domain Containing Protein 2
Length = 98
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 82 KHDGTMCDFCKQQPIYGIRWKCAECSNYDLCSICYHAEKHNLRHRF 127
KH G C+ CKQ PI G +KC EC Y LC C+ + H L H F
Sbjct: 28 KHLGIPCNNCKQFPIEGKCYKCTECIEYHLCQECFDSYCH-LSHTF 72
>pdb|2FC7|A Chain A, Solution Structure Of The Zz Domain Of Zzz3 Protein
Length = 82
Score = 42.7 bits (99), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/66 (36%), Positives = 30/66 (45%), Gaps = 12/66 (18%)
Query: 81 VKHDGTMCDFCKQQPIYGIRWKCAECS---NYDLCSIC--------YHAEKHNLRHRFYR 129
V+H G CD C +PI G+RW C +C + D C C H E H L YR
Sbjct: 17 VQHVGFKCDNCGIEPIQGVRWHCQDCPPEMSLDFCDSCSDCLHETDIHKEDHQL-EPIYR 75
Query: 130 INFPGS 135
+ P S
Sbjct: 76 SSGPSS 81
>pdb|2E5R|A Chain A, Solution Structure Of The Zz Domain Of Dystrobrevin Alpha
(Dystrobrevin-Alpha)
Length = 63
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 9/58 (15%)
Query: 75 DSAPTGVKHDGTMCDFCKQQPIYGIRWKCAECSNYDLCSICY--------HAEKHNLR 124
S +GV H C +C + + G R++C +C NY LC C+ H+ +H ++
Sbjct: 2 SSGSSGVFHP-VECSYCHSESMMGFRYRCQQCHNYQLCQDCFWRGHAGGSHSNQHQMK 58
>pdb|1TOT|A Chain A, Zz Domain Of Cbp- A Novel Fold For A Protein Interaction
Module
Length = 52
Score = 36.2 bits (82), Expect = 0.018, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 88 CDFCKQQPIYGIRWKCAECSNYDLCSICYHAEKH 121
C+ CK RW C C +YDLC CY+ + H
Sbjct: 9 CNECKHH--VETRWHCTVCEDYDLCINCYNTKSH 40
>pdb|2K2S|A Chain A, Structure Of The Mic1-GldMIC6-Egf Complex From Toxoplasma
Gondii
Length = 136
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Query: 174 GNGRRGKVNEVQDWS--AASPRSAAYIVWDNGAKNLYRVGFEGM 215
G G +G++ V D++ A+ SAAY+V D+G + V F+G+
Sbjct: 74 GLGHKGRLAVVLDYTRLNAALGSAAYVVEDSGCSSSEEVSFQGV 117
>pdb|2BVB|A Chain A, The C-Terminal Domain From Micronemal Protein 1 (Mic1)
From Toxoplasma Gondii
Length = 137
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Query: 174 GNGRRGKVNEVQDWS--AASPRSAAYIVWDNGAKNLYRVGFEGM 215
G G +G++ V D++ A+ SAAY+V D+G + V F+G+
Sbjct: 74 GLGHKGRLAVVLDYTRLNAALGSAAYVVEDSGCSSSEEVSFQGV 117
>pdb|3DAS|A Chain A, Structure Of The Pqq-Bound Form Of Aldose Sugar
Dehydrogenase (Adh) From Streptomyces Coelicolor
Length = 347
Score = 27.3 bits (59), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 37/86 (43%), Gaps = 10/86 (11%)
Query: 160 VVRGVDWQWEDQDGGNGRRGKVNEVQDWSA--ASPRSAAYI---VWDNG--AKNLYRVGF 212
+ G ++ W + +G G G + V WS ASP AY VW G + L+R+
Sbjct: 231 IKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDEASPSGIAYAEGSVWXAGLRGERLWRIPL 290
Query: 213 EGMADLKVLNDAKALRHHTLSQLRLL 238
+G A D +A +LR +
Sbjct: 291 KGTA---AAADPQAFLEGEYGRLRTV 313
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.435
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,550,100
Number of Sequences: 62578
Number of extensions: 359233
Number of successful extensions: 626
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 617
Number of HSP's gapped (non-prelim): 11
length of query: 276
length of database: 14,973,337
effective HSP length: 97
effective length of query: 179
effective length of database: 8,903,271
effective search space: 1593685509
effective search space used: 1593685509
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)