BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7971
(276 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9VUX2|MIB_DROME E3 ubiquitin-protein ligase mind-bomb OS=Drosophila melanogaster
GN=mib1 PE=1 SV=3
Length = 1226
Score = 419 bits (1078), Expect = e-117, Method: Compositional matrix adjust.
Identities = 187/215 (86%), Positives = 203/215 (94%)
Query: 11 RFAMEGVGARVIRGPDWKWGKQDGGDGHVGTVRNFESPEEVVVVWDNGTAANYRCAGAFD 70
RF+MEGVGARVIRGPDWKW KQDGG+GHVGTVRNFES EEVVVVWDNGTAANYRCAGA+D
Sbjct: 102 RFSMEGVGARVIRGPDWKWNKQDGGEGHVGTVRNFESAEEVVVVWDNGTAANYRCAGAYD 161
Query: 71 LRILDSAPTGVKHDGTMCDFCKQQPIYGIRWKCAECSNYDLCSICYHAEKHNLRHRFYRI 130
LRILDSAPTGVKH+GTMCD C+QQPI+GIRWKCAEC NYDLCSICYH +KH+LRHRFYRI
Sbjct: 162 LRILDSAPTGVKHEGTMCDTCRQQPIFGIRWKCAECINYDLCSICYHGDKHHLRHRFYRI 221
Query: 131 NFPGSERVLLEPRRKSKKISVRGIFPGARVVRGVDWQWEDQDGGNGRRGKVNEVQDWSAA 190
PG ER +LEPRRKSKK+ RGIFPGARVVRGVDWQWEDQDGG GRRGKVNE+QDWS+A
Sbjct: 222 TTPGGERTMLEPRRKSKKVLARGIFPGARVVRGVDWQWEDQDGGVGRRGKVNEIQDWSSA 281
Query: 191 SPRSAAYIVWDNGAKNLYRVGFEGMADLKVLNDAK 225
SPRSAAY++WDNG+KNLYRVGFEGMADLKV+NDAK
Sbjct: 282 SPRSAAYVIWDNGSKNLYRVGFEGMADLKVVNDAK 316
Score = 44.7 bits (104), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/38 (63%), Positives = 29/38 (76%), Gaps = 1/38 (2%)
Query: 225 KALRHHTLSQLRLLRDVPDVGKLLMGLGSQAADKKSSG 262
+ALRHHTLSQL+ L+DV GKLLMGL A +KK+S
Sbjct: 809 EALRHHTLSQLKQLQDVEGFGKLLMGL-RNANNKKASA 845
>sp|Q86YT6|MIB1_HUMAN E3 ubiquitin-protein ligase MIB1 OS=Homo sapiens GN=MIB1 PE=1 SV=1
Length = 1006
Score = 414 bits (1063), Expect = e-115, Method: Compositional matrix adjust.
Identities = 184/221 (83%), Positives = 205/221 (92%)
Query: 5 SGTRANRFAMEGVGARVIRGPDWKWGKQDGGDGHVGTVRNFESPEEVVVVWDNGTAANYR 64
S +R NR +EGVGARV+RGPDWKWGKQDGG+GHVGTVR+FESPEEVVVVWDNGTAANYR
Sbjct: 2 SNSRNNRVMVEGVGARVVRGPDWKWGKQDGGEGHVGTVRSFESPEEVVVVWDNGTAANYR 61
Query: 65 CAGAFDLRILDSAPTGVKHDGTMCDFCKQQPIYGIRWKCAECSNYDLCSICYHAEKHNLR 124
C+GA+DLRILDSAPTG+KHDGTMCD C+QQPI GIRWKCAEC+NYDLC++CYH +KH+LR
Sbjct: 62 CSGAYDLRILDSAPTGIKHDGTMCDTCRQQPIIGIRWKCAECTNYDLCTVCYHGDKHHLR 121
Query: 125 HRFYRINFPGSERVLLEPRRKSKKISVRGIFPGARVVRGVDWQWEDQDGGNGRRGKVNEV 184
HRFYRI PGSERVLLE RRKSKKI+ RGIF GARVVRGVDWQWEDQDGGNGRRGKV E+
Sbjct: 122 HRFYRITTPGSERVLLESRRKSKKITARGIFAGARVVRGVDWQWEDQDGGNGRRGKVTEI 181
Query: 185 QDWSAASPRSAAYIVWDNGAKNLYRVGFEGMADLKVLNDAK 225
QDWSA+SP SAAY++WDNGAKNLYRVGFEGM+DLK + DAK
Sbjct: 182 QDWSASSPHSAAYVLWDNGAKNLYRVGFEGMSDLKCVQDAK 222
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/49 (55%), Positives = 34/49 (69%), Gaps = 11/49 (22%)
Query: 225 KALRHHTLSQLRLLRDVPDVGK-----------LLMGLGSQAADKKSSG 262
+ALRHHTLSQLR L+D+ DVGK L+MGLG+Q A+KKS+
Sbjct: 705 EALRHHTLSQLRQLQDMQDVGKVDAAWEPSKNTLIMGLGTQGAEKKSAA 753
>sp|Q6GNY1|MIB1_XENLA E3 ubiquitin-protein ligase mib1 OS=Xenopus laevis GN=mib1 PE=2
SV=1
Length = 1011
Score = 414 bits (1063), Expect = e-115, Method: Compositional matrix adjust.
Identities = 184/221 (83%), Positives = 205/221 (92%)
Query: 5 SGTRANRFAMEGVGARVIRGPDWKWGKQDGGDGHVGTVRNFESPEEVVVVWDNGTAANYR 64
SG+R NR +EGVGARV RGPDWKWGKQDGG+GHVGTVR+FESPEEVVVVWDNGTAANYR
Sbjct: 2 SGSRNNRVMVEGVGARVARGPDWKWGKQDGGEGHVGTVRSFESPEEVVVVWDNGTAANYR 61
Query: 65 CAGAFDLRILDSAPTGVKHDGTMCDFCKQQPIYGIRWKCAECSNYDLCSICYHAEKHNLR 124
C+GA+DLRI+DSAPTG+KHDGTMCD C+QQPI GIRWKCAEC+NYDLC++CYH +KH+LR
Sbjct: 62 CSGAYDLRIMDSAPTGIKHDGTMCDTCRQQPIIGIRWKCAECTNYDLCTVCYHGDKHHLR 121
Query: 125 HRFYRINFPGSERVLLEPRRKSKKISVRGIFPGARVVRGVDWQWEDQDGGNGRRGKVNEV 184
HRFYRI PGSERVLLE RRKSKKI+ RGIF GARVVRGVDWQWEDQDGGNGRRGKV E+
Sbjct: 122 HRFYRITTPGSERVLLESRRKSKKITARGIFAGARVVRGVDWQWEDQDGGNGRRGKVTEI 181
Query: 185 QDWSAASPRSAAYIVWDNGAKNLYRVGFEGMADLKVLNDAK 225
QDWSA+SP SAAY++WDNGAKNLYRVGFEGM+DLK + DAK
Sbjct: 182 QDWSASSPHSAAYVLWDNGAKNLYRVGFEGMSDLKCVQDAK 222
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/50 (54%), Positives = 34/50 (68%), Gaps = 12/50 (24%)
Query: 225 KALRHHTLSQLRLLRDVPDVGK------------LLMGLGSQAADKKSSG 262
+ALRHHTLSQLR L+D+ DVGK L+MGLG+Q A+KKS+
Sbjct: 705 EALRHHTLSQLRQLQDMQDVGKVDTTTWEPSKNTLIMGLGTQGAEKKSAA 754
>sp|Q80SY4|MIB1_MOUSE E3 ubiquitin-protein ligase MIB1 OS=Mus musculus GN=Mib1 PE=1 SV=1
Length = 1006
Score = 413 bits (1062), Expect = e-115, Method: Compositional matrix adjust.
Identities = 184/221 (83%), Positives = 205/221 (92%)
Query: 5 SGTRANRFAMEGVGARVIRGPDWKWGKQDGGDGHVGTVRNFESPEEVVVVWDNGTAANYR 64
S +R NR +EGVGARV+RGPDWKWGKQDGG+GHVGTVR+FESPEEVVVVWDNGTAANYR
Sbjct: 2 SNSRNNRVMVEGVGARVVRGPDWKWGKQDGGEGHVGTVRSFESPEEVVVVWDNGTAANYR 61
Query: 65 CAGAFDLRILDSAPTGVKHDGTMCDFCKQQPIYGIRWKCAECSNYDLCSICYHAEKHNLR 124
C+GA+DLRILDSAPTG+KHDGTMCD C+QQPI GIRWKCAEC+NYDLC++CYH +KH+LR
Sbjct: 62 CSGAYDLRILDSAPTGIKHDGTMCDTCRQQPIIGIRWKCAECTNYDLCTVCYHGDKHHLR 121
Query: 125 HRFYRINFPGSERVLLEPRRKSKKISVRGIFPGARVVRGVDWQWEDQDGGNGRRGKVNEV 184
HRFYRI PGSERVLLE RRKSKKI+ RGIF GARVVRGVDWQWEDQDGGNGRRGKV E+
Sbjct: 122 HRFYRITTPGSERVLLESRRKSKKITARGIFAGARVVRGVDWQWEDQDGGNGRRGKVTEI 181
Query: 185 QDWSAASPRSAAYIVWDNGAKNLYRVGFEGMADLKVLNDAK 225
QDWSA+SP SAAY++WDNGAKNLYRVGFEGM+DLK + DAK
Sbjct: 182 QDWSASSPHSAAYVLWDNGAKNLYRVGFEGMSDLKCVQDAK 222
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/49 (55%), Positives = 34/49 (69%), Gaps = 11/49 (22%)
Query: 225 KALRHHTLSQLRLLRDVPDVGK-----------LLMGLGSQAADKKSSG 262
+ALRHHTLSQLR L+D+ DVGK L+MGLG+Q A+KKS+
Sbjct: 705 EALRHHTLSQLRQLQDMQDVGKVDAAWEPSKNTLIMGLGTQGAEKKSAA 753
>sp|Q804S5|MIB1_DANRE E3 ubiquitin-protein ligase mib1 OS=Danio rerio GN=mib1 PE=1 SV=1
Length = 1030
Score = 411 bits (1056), Expect = e-114, Method: Compositional matrix adjust.
Identities = 184/218 (84%), Positives = 201/218 (92%)
Query: 8 RANRFAMEGVGARVIRGPDWKWGKQDGGDGHVGTVRNFESPEEVVVVWDNGTAANYRCAG 67
R NR MEGVGARVIRGPDWKWGKQDGG+GHVGTVR+FESPEEVVVVWDNGTAANYRC+G
Sbjct: 5 RNNRVMMEGVGARVIRGPDWKWGKQDGGEGHVGTVRSFESPEEVVVVWDNGTAANYRCSG 64
Query: 68 AFDLRILDSAPTGVKHDGTMCDFCKQQPIYGIRWKCAECSNYDLCSICYHAEKHNLRHRF 127
A+D+RILDSAPTG+KHDGTMCD C+QQPI GIRWKCAEC+NYDLC+ CYH +KH+LRHRF
Sbjct: 65 AYDVRILDSAPTGIKHDGTMCDTCRQQPIIGIRWKCAECTNYDLCTTCYHGDKHHLRHRF 124
Query: 128 YRINFPGSERVLLEPRRKSKKISVRGIFPGARVVRGVDWQWEDQDGGNGRRGKVNEVQDW 187
YRI PGSERVLLE RRKSKKI+ RGIF G RVVRGVDWQWEDQDGGNGRRGKV E+QDW
Sbjct: 125 YRITTPGSERVLLESRRKSKKITARGIFAGGRVVRGVDWQWEDQDGGNGRRGKVTEIQDW 184
Query: 188 SAASPRSAAYIVWDNGAKNLYRVGFEGMADLKVLNDAK 225
SAASP SAAY++WDNGAKNLYRVGFEGM+DLK + DAK
Sbjct: 185 SAASPHSAAYVLWDNGAKNLYRVGFEGMSDLKCVQDAK 222
Score = 48.5 bits (114), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/48 (54%), Positives = 33/48 (68%), Gaps = 10/48 (20%)
Query: 225 KALRHHTLSQLRLLRDVPDVGK----------LLMGLGSQAADKKSSG 262
+ALRHHTLSQLR L+D+ DV K L+MGLG+Q A+KKS+
Sbjct: 705 EALRHHTLSQLRQLQDMQDVSKVEPWEPSKNTLIMGLGTQGAEKKSAA 752
>sp|Q5ZIJ9|MIB2_CHICK E3 ubiquitin-protein ligase MIB2 OS=Gallus gallus GN=MIB2 PE=2 SV=1
Length = 954
Score = 213 bits (541), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 102/222 (45%), Positives = 140/222 (63%), Gaps = 9/222 (4%)
Query: 12 FAMEGVGARVIRGPDWKWGKQDGGDGHVGTVRNF------ESPEEVVVV-WDNGTAANYR 64
+A VG RV+RG DWKWG QD G+G+VGTV +P++ VVV WD G NYR
Sbjct: 6 YASMQVGMRVVRGVDWKWGSQDSGEGNVGTVVEIGRTGSPTTPDKTVVVQWDQGNRTNYR 65
Query: 65 CA--GAFDLRILDSAPTGVKHDGTMCDFCKQQPIYGIRWKCAECSNYDLCSICYHAEKHN 122
GA+DL + D+A GV+H +CD CK+ I G+RWKC C +YDLC+ CY KH+
Sbjct: 66 TGFQGAYDLLLYDNAQIGVRHPNIICDCCKKHGIRGMRWKCKMCFDYDLCTQCYMNNKHD 125
Query: 123 LRHRFYRINFPGSERVLLEPRRKSKKISVRGIFPGARVVRGVDWQWEDQDGGNGRRGKVN 182
L H F R S+ VL+ PR+ +I+++G F GA+VVRG DW+W +QDGG G+ G+V
Sbjct: 126 LSHAFERYETAHSQPVLVSPRQNLTRITLKGTFQGAKVVRGPDWEWGNQDGGEGKTGRVV 185
Query: 183 EVQDWSAASPRSAAYIVWDNGAKNLYRVGFEGMADLKVLNDA 224
+++ W + RS A + W +G N+YRVG +G DLK +A
Sbjct: 186 DIRGWDVETGRSVASVTWSDGTTNVYRVGHKGKVDLKCTVEA 227
Score = 63.2 bits (152), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 44/75 (58%), Gaps = 2/75 (2%)
Query: 157 GARVVRGVDWQWEDQDGGNGRRGKVNEV-QDWSAASPRSAAYIVWDNGAKNLYRVGFEGM 215
G RVVRGVDW+W QD G G G V E+ + S +P + WD G + YR GF+G
Sbjct: 12 GMRVVRGVDWKWGSQDSGEGNVGTVVEIGRTGSPTTPDKTVVVQWDQGNRTNYRTGFQGA 71
Query: 216 ADLKVLNDAK-ALRH 229
DL + ++A+ +RH
Sbjct: 72 YDLLLYDNAQIGVRH 86
>sp|Q68LP1|MIB2_RAT E3 ubiquitin-protein ligase MIB2 OS=Rattus norvegicus GN=Mib2 PE=2
SV=2
Length = 971
Score = 194 bits (492), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 100/217 (46%), Positives = 135/217 (62%), Gaps = 9/217 (4%)
Query: 17 VGARVIRGPDWKWGKQDGGDGH------VGTVRNFESPEEVVVV-WDNGTAANYRCA--G 67
VG RV+RG DWKWG+QDGG+G +G + +P+ VVV WD GT NYR G
Sbjct: 11 VGMRVVRGMDWKWGQQDGGEGGVGTVVELGRHGSPSTPDRTVVVQWDQGTRTNYRAGYQG 70
Query: 68 AFDLRILDSAPTGVKHDGTMCDFCKQQPIYGIRWKCAECSNYDLCSICYHAEKHNLRHRF 127
A DL + D+A G++H +CD CK+ + G+RWKC C +YDLC+ CY KH+L H F
Sbjct: 71 AHDLLLYDNAQIGIRHPNIICDCCKKHGLRGMRWKCRVCFDYDLCTQCYMHNKHDLTHAF 130
Query: 128 YRINFPGSERVLLEPRRKSKKISVRGIFPGARVVRGVDWQWEDQDGGNGRRGKVNEVQDW 187
R S V L PR+ +I +RGIF GA+VVRG DW+W QDGG G+ G+V +++ W
Sbjct: 131 ERYETSHSRPVTLSPRQGLPRIPLRGIFQGAKVVRGPDWEWGSQDGGEGKTGRVVDIRGW 190
Query: 188 SAASPRSAAYIVWDNGAKNLYRVGFEGMADLKVLNDA 224
+ RS A + W +G N+YRVG +G DLK + +A
Sbjct: 191 DVETGRSVASVTWADGTTNVYRVGHKGKVDLKCVGEA 227
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 48/79 (60%), Gaps = 2/79 (2%)
Query: 153 GIFPGARVVRGVDWQWEDQDGGNGRRGKVNEV-QDWSAASPRSAAYIVWDNGAKNLYRVG 211
G+ G RVVRG+DW+W QDGG G G V E+ + S ++P + WD G + YR G
Sbjct: 8 GVQVGMRVVRGMDWKWGQQDGGEGGVGTVVELGRHGSPSTPDRTVVVQWDQGTRTNYRAG 67
Query: 212 FEGMADLKVLNDAK-ALRH 229
++G DL + ++A+ +RH
Sbjct: 68 YQGAHDLLLYDNAQIGIRH 86
>sp|Q8R516|MIB2_MOUSE E3 ubiquitin-protein ligase MIB2 OS=Mus musculus GN=Mib2 PE=1 SV=2
Length = 973
Score = 193 bits (490), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 99/217 (45%), Positives = 135/217 (62%), Gaps = 9/217 (4%)
Query: 17 VGARVIRGPDWKWGKQDGGDGH------VGTVRNFESPEEVVVV-WDNGTAANYRCA--G 67
VG RV+RG DWKWG+QDGG+G +G + +P+ VVV WD GT NYR G
Sbjct: 11 VGMRVVRGMDWKWGQQDGGEGGVGTVVELGRHGSPSTPDRTVVVQWDQGTRTNYRAGYQG 70
Query: 68 AFDLRILDSAPTGVKHDGTMCDFCKQQPIYGIRWKCAECSNYDLCSICYHAEKHNLRHRF 127
A DL + D+A G++H +CD CK+ + G+RWKC C +YDLC+ CY KH+L H F
Sbjct: 71 AHDLLLYDNAQIGIRHPNIICDCCKKHGLRGMRWKCRVCFDYDLCTQCYMHNKHDLTHAF 130
Query: 128 YRINFPGSERVLLEPRRKSKKISVRGIFPGARVVRGVDWQWEDQDGGNGRRGKVNEVQDW 187
R S V L PR+ +I +RGIF GA+VVRG DW+W QDGG G+ G+V +++ W
Sbjct: 131 ERYETSHSRPVTLSPRQGLPRIPLRGIFQGAKVVRGPDWEWGSQDGGEGKTGRVVDIRGW 190
Query: 188 SAASPRSAAYIVWDNGAKNLYRVGFEGMADLKVLNDA 224
+ RS A + W +G N+YRVG +G DL+ + +A
Sbjct: 191 DVETGRSVASVTWADGTTNVYRVGHKGKVDLRCVGEA 227
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 48/79 (60%), Gaps = 2/79 (2%)
Query: 153 GIFPGARVVRGVDWQWEDQDGGNGRRGKVNEV-QDWSAASPRSAAYIVWDNGAKNLYRVG 211
G+ G RVVRG+DW+W QDGG G G V E+ + S ++P + WD G + YR G
Sbjct: 8 GVQVGMRVVRGMDWKWGQQDGGEGGVGTVVELGRHGSPSTPDRTVVVQWDQGTRTNYRAG 67
Query: 212 FEGMADLKVLNDAK-ALRH 229
++G DL + ++A+ +RH
Sbjct: 68 YQGAHDLLLYDNAQIGIRH 86
>sp|Q96AX9|MIB2_HUMAN E3 ubiquitin-protein ligase MIB2 OS=Homo sapiens GN=MIB2 PE=1 SV=3
Length = 1013
Score = 192 bits (489), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 101/217 (46%), Positives = 134/217 (61%), Gaps = 9/217 (4%)
Query: 17 VGARVIRGPDWKWGKQDGGDGH------VGTVRNFESPEEVVVV-WDNGTAANYRCA--G 67
VG RV+RG DWKWG+QDGG+G +G + +P+ VVV WD GT NYR G
Sbjct: 69 VGMRVVRGVDWKWGQQDGGEGGVGTVVELGRHGSPSTPDRTVVVQWDQGTRTNYRAGYQG 128
Query: 68 AFDLRILDSAPTGVKHDGTMCDFCKQQPIYGIRWKCAECSNYDLCSICYHAEKHNLRHRF 127
A DL + D+A GV+H +CD CK+ + G+RWKC C +YDLC+ CY KH L H F
Sbjct: 129 AHDLLLYDNAQIGVRHPNIICDCCKKHGLRGMRWKCRVCLDYDLCTQCYMHNKHELAHAF 188
Query: 128 YRINFPGSERVLLEPRRKSKKISVRGIFPGARVVRGVDWQWEDQDGGNGRRGKVNEVQDW 187
R S V L PR+ +I +RGIF GA+VVRG DW+W QDGG G+ G+V +++ W
Sbjct: 189 DRYETAHSRPVTLSPRQGLPRIPLRGIFQGAKVVRGPDWEWGSQDGGEGKPGRVVDIRGW 248
Query: 188 SAASPRSAAYIVWDNGAKNLYRVGFEGMADLKVLNDA 224
+ RS A + W +G N+YRVG +G DLK + +A
Sbjct: 249 DVETGRSVASVTWADGTTNVYRVGHKGKVDLKCVGEA 285
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 48/79 (60%), Gaps = 2/79 (2%)
Query: 153 GIFPGARVVRGVDWQWEDQDGGNGRRGKVNEV-QDWSAASPRSAAYIVWDNGAKNLYRVG 211
G+ G RVVRGVDW+W QDGG G G V E+ + S ++P + WD G + YR G
Sbjct: 66 GVQVGMRVVRGVDWKWGQQDGGEGGVGTVVELGRHGSPSTPDRTVVVQWDQGTRTNYRAG 125
Query: 212 FEGMADLKVLNDAK-ALRH 229
++G DL + ++A+ +RH
Sbjct: 126 YQGAHDLLLYDNAQIGVRH 144
>sp|O95714|HERC2_HUMAN E3 ubiquitin-protein ligase HERC2 OS=Homo sapiens GN=HERC2 PE=1 SV=2
Length = 4834
Score = 70.5 bits (171), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 57/118 (48%), Gaps = 9/118 (7%)
Query: 22 IRGPDWKWGKQDGGDGHVGTVRNFESPEEVVVVWDNGTAANYRCAGAFDLRILDSAPTGV 81
+ P +KWG VG V+ F + + ++V + ++ ++ ++ S
Sbjct: 2651 VTTPKYKWGSVT--HQSVGVVKAFSANGKDIIV--DFPQQSHWTGLLSEMELVPSI---- 2702
Query: 82 KHDGTMCDFCKQQPIYGIRWKCAECSNYDLCSICYHAEKHNLRHRFYRINFPGSERVL 139
H G CD C+ PI G R+KC C ++D C C+ +KHN RH F RIN PG V
Sbjct: 2703 -HPGVTCDGCQMFPINGSRFKCRNCDDFDFCETCFKTKKHNTRHTFGRINEPGQSAVF 2759
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 50/99 (50%), Gaps = 21/99 (21%)
Query: 134 GSERVLLEPRRKSKKISVRGIFP--------GARVVRGVDWQWEDQDG---GNGRR-GKV 181
S VL E R+++ + + P G RV+RGVDW+W DQDG G GR G++
Sbjct: 1839 ASATVLEETRKETAPVQLPVSGPELAAMMKIGTRVMRGVDWKWGDQDGPPPGLGRVIGEL 1898
Query: 182 NEVQDWSAASPRSAAYIVWDNGAKNLYRVGFEGMADLKV 220
E W + WD G+ N YR+G EG DLK+
Sbjct: 1899 GE-DGW--------IRVQWDTGSTNSYRMGKEGKYDLKL 1928
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 38/65 (58%), Gaps = 5/65 (7%)
Query: 13 AMEGVGARVIRGPDWKWGKQDGGDGHVGTVRNFESPEE--VVVVWDNGTAANYRCA--GA 68
AM +G RV+RG DWKWG QDG +G V E E+ + V WD G+ +YR G
Sbjct: 1865 AMMKIGTRVMRGVDWKWGDQDGPPPGLGRVIG-ELGEDGWIRVQWDTGSTNSYRMGKEGK 1923
Query: 69 FDLRI 73
+DL++
Sbjct: 1924 YDLKL 1928
>sp|Q4U2R1|HERC2_MOUSE E3 ubiquitin-protein ligase HERC2 OS=Mus musculus GN=Herc2 PE=1 SV=3
Length = 4836
Score = 70.1 bits (170), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 57/118 (48%), Gaps = 9/118 (7%)
Query: 22 IRGPDWKWGKQDGGDGHVGTVRNFESPEEVVVVWDNGTAANYRCAGAFDLRILDSAPTGV 81
+ P +KWG VG V+ F + + ++V + ++ ++ ++ S
Sbjct: 2652 VTTPKYKWGSVT--HQSVGLVKAFSANGKDIIV--DFPQQSHWTGLLSEMELVPSI---- 2703
Query: 82 KHDGTMCDFCKQQPIYGIRWKCAECSNYDLCSICYHAEKHNLRHRFYRINFPGSERVL 139
H G CD C+ PI G R+KC C ++D C C+ +KHN RH F RIN PG V
Sbjct: 2704 -HPGVTCDGCQTFPINGSRFKCRNCDDFDFCETCFKTKKHNTRHTFGRINEPGQSAVF 2760
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 51/101 (50%), Gaps = 21/101 (20%)
Query: 134 GSERVLLEPRRKSKKISVRGIFP--------GARVVRGVDWQWEDQDG---GNGRR-GKV 181
S VL E R+++ + + P G RV+RGVDW+W DQDG G GR G++
Sbjct: 1840 ASATVLEETRKETAPVQLPVSGPELAAMMKIGTRVMRGVDWKWGDQDGPPPGLGRVIGEL 1899
Query: 182 NEVQDWSAASPRSAAYIVWDNGAKNLYRVGFEGMADLKVLN 222
E W + WD G+ N YR+G EG DLK++
Sbjct: 1900 GE-DGW--------IRVQWDTGSTNSYRMGKEGKYDLKLVE 1931
Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 40/67 (59%), Gaps = 5/67 (7%)
Query: 13 AMEGVGARVIRGPDWKWGKQDGGDGHVGTVRNFESPEE--VVVVWDNGTAANYRCA--GA 68
AM +G RV+RG DWKWG QDG +G V E E+ + V WD G+ +YR G
Sbjct: 1866 AMMKIGTRVMRGVDWKWGDQDGPPPGLGRVIG-ELGEDGWIRVQWDTGSTNSYRMGKEGK 1924
Query: 69 FDLRILD 75
+DL++++
Sbjct: 1925 YDLKLVE 1931
>sp|P14199|REF2P_DROME Protein ref(2)P OS=Drosophila melanogaster GN=ref(2)P PE=1 SV=2
Length = 599
Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 39/88 (44%), Gaps = 8/88 (9%)
Query: 49 EEVVVVWDNGTAANYRCAGAFDLRILDSAPTGVKHDGTMCDFCKQQPIYGIRWKCAECSN 108
EE G++AN +D HD CD C P+ G R+KC +CSN
Sbjct: 94 EEPKATKQEGSSANAEAPS------VDDPSNFTIHDAVECDGCGLAPLIGFRYKCVQCSN 147
Query: 109 YDLCSICYHAEKH--NLRHRFYRINFPG 134
YDLC C A KH +L R N PG
Sbjct: 148 YDLCQKCELAHKHPEHLMLRMPTNNGPG 175
>sp|Q24629|REF2P_DROSI Protein ref(2)P OS=Drosophila simulans GN=ref(2)P PE=4 SV=1
Length = 599
Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 39/88 (44%), Gaps = 8/88 (9%)
Query: 49 EEVVVVWDNGTAANYRCAGAFDLRILDSAPTGVKHDGTMCDFCKQQPIYGIRWKCAECSN 108
EE G++AN +D HD CD C P+ G R+KC +CSN
Sbjct: 94 EEPKATKQEGSSANAEAPS------VDDPSNFTIHDSVQCDGCGLAPLIGFRYKCVQCSN 147
Query: 109 YDLCSICYHAEKH--NLRHRFYRINFPG 134
+DLC C A KH +L R N PG
Sbjct: 148 FDLCQKCESAHKHPEHLMLRMPTNNGPG 175
>sp|Q9ULT8|HECD1_HUMAN E3 ubiquitin-protein ligase HECTD1 OS=Homo sapiens GN=HECTD1 PE=1
SV=3
Length = 2610
Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 44/80 (55%), Gaps = 10/80 (12%)
Query: 143 RRKSKKISVRGIFPGARVVRGVDWQWEDQDGGNGRRGKVN-EVQD-WSAASPRSAAYIVW 200
RR + ++ + PGARV+RG+DW+W DQDG G V E+ + W + W
Sbjct: 1263 RRLVRSQVLKYMVPGARVIRGLDWKWRDQDGSPQGEGTVTGELHNGW--------IDVTW 1314
Query: 201 DNGAKNLYRVGFEGMADLKV 220
D G N YR+G EG DLK+
Sbjct: 1315 DAGGSNSYRMGAEGKFDLKL 1334
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Query: 18 GARVIRGPDWKWGKQDGGDGHVGTVRNFESPEEVVVVWDNGTAANYR--CAGAFDLRI 73
GARVIRG DWKW QDG GTV + V WD G + +YR G FDL++
Sbjct: 1277 GARVIRGLDWKWRDQDGSPQGEGTVTGELHNGWIDVTWDAGGSNSYRMGAEGKFDLKL 1334
>sp|Q69ZR2|HECD1_MOUSE E3 ubiquitin-protein ligase HECTD1 OS=Mus musculus GN=Hectd1 PE=1
SV=2
Length = 2618
Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 44/80 (55%), Gaps = 10/80 (12%)
Query: 143 RRKSKKISVRGIFPGARVVRGVDWQWEDQDGGNGRRGKVN-EVQD-WSAASPRSAAYIVW 200
RR + ++ + PGARV+RG+DW+W DQDG G V E+ + W + W
Sbjct: 1268 RRLVRSQVLKYMVPGARVIRGLDWKWRDQDGSPQGEGTVTGELHNGW--------IDVTW 1319
Query: 201 DNGAKNLYRVGFEGMADLKV 220
D G N YR+G EG DLK+
Sbjct: 1320 DAGGSNSYRMGAEGKFDLKL 1339
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Query: 18 GARVIRGPDWKWGKQDGGDGHVGTVRNFESPEEVVVVWDNGTAANYR--CAGAFDLRI 73
GARVIRG DWKW QDG GTV + V WD G + +YR G FDL++
Sbjct: 1282 GARVIRGLDWKWRDQDGSPQGEGTVTGELHNGWIDVTWDAGGSNSYRMGAEGKFDLKL 1339
>sp|Q9VR91|HERC2_DROME Probable E3 ubiquitin-protein ligase HERC2 OS=Drosophila melanogaster
GN=HERC2 PE=1 SV=3
Length = 4912
Score = 48.9 bits (115), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 39/71 (54%), Gaps = 11/71 (15%)
Query: 157 GARVVRGVDWQWEDQDGGNGRRGK-VNEVQD--WSAASPRSAAYIVWDNGAKNLYRVGFE 213
G R+VRG DW+W DQDG G+ ++EV + W + W GA N YR+G E
Sbjct: 1928 GTRIVRGADWKWGDQDGNPPGEGRIISEVGEDGW--------VRVEWYTGATNSYRMGKE 1979
Query: 214 GMADLKVLNDA 224
G DL++ + A
Sbjct: 1980 GQYDLQLADSA 1990
Score = 45.1 bits (105), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 37/65 (56%), Gaps = 5/65 (7%)
Query: 17 VGARVIRGPDWKWGKQDGGDGHVGTVRNFESPEE--VVVVWDNGTAANYRCA--GAFDLR 72
+G R++RG DWKWG QDG G + + E E+ V V W G +YR G +DL+
Sbjct: 1927 IGTRIVRGADWKWGDQDGNPPGEGRIIS-EVGEDGWVRVEWYTGATNSYRMGKEGQYDLQ 1985
Query: 73 ILDSA 77
+ DSA
Sbjct: 1986 LADSA 1990
>sp|Q9VDW6|DMDA_DROME Dystrophin, isoforms A/C/F/G/H OS=Drosophila melanogaster GN=Dys PE=1
SV=3
Length = 3598
Score = 48.5 bits (114), Expect = 5e-05, Method: Composition-based stats.
Identities = 19/48 (39%), Positives = 29/48 (60%), Gaps = 5/48 (10%)
Query: 82 KHDGTMCDFCKQQPIYGIRWKCAECSNYDLCSICY----HAEKHNLRH 125
KH C+ CK+ PI G R++C +C N+D+C C+ +A+ H L H
Sbjct: 3107 KHQAK-CNICKEYPIVGFRYRCLKCFNFDMCQKCFFFGRNAKNHKLTH 3153
>sp|Q0KI50|DMDD_DROME Dystrophin, isoform D OS=Drosophila melanogaster GN=Dys PE=1 SV=1
Length = 1854
Score = 48.5 bits (114), Expect = 5e-05, Method: Composition-based stats.
Identities = 19/48 (39%), Positives = 29/48 (60%), Gaps = 5/48 (10%)
Query: 82 KHDGTMCDFCKQQPIYGIRWKCAECSNYDLCSICY----HAEKHNLRH 125
KH C+ CK+ PI G R++C +C N+D+C C+ +A+ H L H
Sbjct: 1464 KHQAK-CNICKEYPIVGFRYRCLKCFNFDMCQKCFFFGRNAKNHKLTH 1510
>sp|Q7YU29|DMDE_DROME Dystrophin, isoform E OS=Drosophila melanogaster GN=Dys PE=1 SV=1
Length = 1051
Score = 48.5 bits (114), Expect = 5e-05, Method: Composition-based stats.
Identities = 19/48 (39%), Positives = 29/48 (60%), Gaps = 5/48 (10%)
Query: 82 KHDGTMCDFCKQQPIYGIRWKCAECSNYDLCSICY----HAEKHNLRH 125
KH C+ CK+ PI G R++C +C N+D+C C+ +A+ H L H
Sbjct: 661 KHQAK-CNICKEYPIVGFRYRCLKCFNFDMCQKCFFFGRNAKNHKLTH 707
>sp|Q5RBA5|SQSTM_PONAB Sequestosome-1 OS=Pongo abelii GN=SQSTM1 PE=2 SV=1
Length = 440
Score = 48.5 bits (114), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 4/57 (7%)
Query: 77 APTGVKHDGTMCDFCKQQPIYGIRWKCAECSNYDLCSICYHAEKHNLRHRFYRINFP 133
AP + H +CD C P+ G R+KC+ C +YDLCS+C E L ++ FP
Sbjct: 117 APRNMVHPNVICDGC-NGPVVGTRYKCSVCPDYDLCSVC---EGKGLHRGHTKLAFP 169
>sp|Q64337|SQSTM_MOUSE Sequestosome-1 OS=Mus musculus GN=Sqstm1 PE=1 SV=1
Length = 442
Score = 48.1 bits (113), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 4/57 (7%)
Query: 77 APTGVKHDGTMCDFCKQQPIYGIRWKCAECSNYDLCSICYHAEKHNLRHRFYRINFP 133
AP + H +CD C P+ G R+KC+ C +YDLCS+C E L ++ FP
Sbjct: 117 APRNMVHPNVICDGC-NGPVVGTRYKCSVCPDYDLCSVC---EGKGLHREHSKLIFP 169
>sp|Q13501|SQSTM_HUMAN Sequestosome-1 OS=Homo sapiens GN=SQSTM1 PE=1 SV=1
Length = 440
Score = 48.1 bits (113), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 4/57 (7%)
Query: 77 APTGVKHDGTMCDFCKQQPIYGIRWKCAECSNYDLCSICYHAEKHNLRHRFYRINFP 133
AP + H +CD C P+ G R+KC+ C +YDLCS+C E L ++ FP
Sbjct: 117 APRNMVHPNVICDGC-NGPVVGTRYKCSVCPDYDLCSVC---EGKGLHRGHTKLAFP 169
>sp|Q9VDW3|DMDB_DROME Dystrophin, isoform B OS=Drosophila melanogaster GN=Dys PE=1 SV=3
Length = 1669
Score = 48.1 bits (113), Expect = 7e-05, Method: Composition-based stats.
Identities = 17/42 (40%), Positives = 27/42 (64%), Gaps = 4/42 (9%)
Query: 88 CDFCKQQPIYGIRWKCAECSNYDLCSICY----HAEKHNLRH 125
C+ CK+ PI G R++C +C N+D+C C+ +A+ H L H
Sbjct: 1284 CNICKEYPIVGFRYRCLKCFNFDMCQKCFFFGRNAKNHKLTH 1325
>sp|Q54QG5|Y3893_DICDI Probable E3 ubiquitin-protein ligase DDB_G0283893 OS=Dictyostelium
discoideum GN=DDB_G0283893 PE=3 SV=2
Length = 5875
Score = 47.8 bits (112), Expect = 9e-05, Method: Composition-based stats.
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 88 CDFCKQQPIYGIRWKCAECSNYDLCSICYH 117
CD C PI G RW C+ C ++DLC+ CY
Sbjct: 3231 CDLCNINPITGKRWNCSNCGDFDLCNQCYQ 3260
>sp|A2CJ06|DYTN_HUMAN Dystrotelin OS=Homo sapiens GN=DYTN PE=2 SV=1
Length = 578
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 5/54 (9%)
Query: 76 SAPTGVKHDGTMCDFCKQQPIYGIRWKCAECSNYDLCSICY----HAEKHNLRH 125
SA V H C C+ PI G+R++C +C N+D+C +C+ H++ H H
Sbjct: 217 SAAERVTHPAR-CTLCRTFPITGLRYRCLKCLNFDICQMCFLSGLHSKSHQKSH 269
>sp|Q9P792|YN8B_SCHPO ZZ-type zinc finger-containing protein P35G2.11c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBP35G2.11c PE=4 SV=1
Length = 397
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 87 MCDFCKQQPIYGIRWKCAECSNYDLCSICYHAEKHNLRHRFYRI 130
+CD C +QPI+ +R+KC+ C +YD+C C H+ H F RI
Sbjct: 135 ICDHC-EQPIHNVRYKCSVCDDYDICESCLTDNSHSNTHAFVRI 177
Score = 39.3 bits (90), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 72 RILDSAPTGVKHDGTMCDFCKQQPIYGIRWKCAECSNYDLCSIC 115
+ +SA T H CD C PI G R+ C C +YDLCS C
Sbjct: 198 ELFESASTV--HRSVQCDNCLAHPIVGPRFHCLVCEDYDLCSSC 239
>sp|Q9BVR0|HRC23_HUMAN Putative HERC2-like protein 3 OS=Homo sapiens GN=HERC2P3 PE=5 SV=2
Length = 1158
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 49/99 (49%), Gaps = 21/99 (21%)
Query: 134 GSERVLLEPRRKSKKISVRGIFP--------GARVVRGVDWQWEDQD---GGNGRR-GKV 181
S VL E R+++ + + P G RV+RGVDW+W DQD G GR G++
Sbjct: 567 ASATVLEETRKETAPVQLPVSGPELAAMMKIGTRVMRGVDWKWGDQDRPPPGLGRVIGEL 626
Query: 182 NEVQDWSAASPRSAAYIVWDNGAKNLYRVGFEGMADLKV 220
E W + WD G+ N YR+G EG DLK+
Sbjct: 627 GE-DGW--------IRVQWDTGSTNSYRMGKEGNYDLKL 656
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 37/65 (56%), Gaps = 5/65 (7%)
Query: 13 AMEGVGARVIRGPDWKWGKQDGGDGHVGTVRNFESPEE--VVVVWDNGTAANYRCA--GA 68
AM +G RV+RG DWKWG QD +G V E E+ + V WD G+ +YR G
Sbjct: 593 AMMKIGTRVMRGVDWKWGDQDRPPPGLGRVIG-ELGEDGWIRVQWDTGSTNSYRMGKEGN 651
Query: 69 FDLRI 73
+DL++
Sbjct: 652 YDLKL 656
>sp|Q9TW65|DMD_CAEEL Dystrophin-1 OS=Caenorhabditis elegans GN=dys-1 PE=1 SV=2
Length = 3674
Score = 46.6 bits (109), Expect = 2e-04, Method: Composition-based stats.
Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
Query: 82 KHDGTMCDFCKQQPIYGIRWKCAECSNYDLCSICYHAEKHNLRHRFYRINFPGSE 136
KH + C+ CK PI GIR++C C N DLC C+ +++ H R N P E
Sbjct: 3301 KH-ASKCNVCKMFPIIGIRYRCLTCFNCDLCQNCFFSQRTAKSH---RTNHPMQE 3351
>sp|Q7T321|KCMF1_DANRE E3 ubiquitin-protein ligase KCMF1 OS=Danio rerio GN=kcmf1 PE=2 SV=1
Length = 383
Score = 46.2 bits (108), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 8/59 (13%)
Query: 82 KHDGTMCDFCKQQPIYGIRWKCAECSNYDLCSICY--------HAEKHNLRHRFYRINF 132
+H+G CD C + G R+KC C +YDLC+ CY H +H ++ R++F
Sbjct: 3 RHEGVSCDACLKGNFRGRRYKCLICYDYDLCASCYESGATTTRHTTEHPMQCILTRVDF 61
>sp|O08623|SQSTM_RAT Sequestosome-1 OS=Rattus norvegicus GN=Sqstm1 PE=1 SV=1
Length = 439
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
Query: 83 HDGTMCDFCKQQPIYGIRWKCAECSNYDLCSICYHAEKHNLRHRFYRINFP 133
H +CD C P+ G R+KC+ C +YDLCS+C E L ++ FP
Sbjct: 120 HPNVICDGC-NGPVVGTRYKCSVCPDYDLCSVC---EGKGLHREHSKLIFP 166
>sp|Q6GPB6|KCMF1_XENLA E3 ubiquitin-protein ligase KCMF1 OS=Xenopus laevis GN=kcmf1 PE=2
SV=1
Length = 381
Score = 45.4 bits (106), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 25/44 (56%)
Query: 82 KHDGTMCDFCKQQPIYGIRWKCAECSNYDLCSICYHAEKHNLRH 125
+H+G CD C + G R+KC C +YDLC+ CY + RH
Sbjct: 3 RHEGVSCDACLKGNFRGRRYKCLICYDYDLCASCYESGATTTRH 46
>sp|Q9P0J7|KCMF1_HUMAN E3 ubiquitin-protein ligase KCMF1 OS=Homo sapiens GN=KCMF1 PE=1
SV=2
Length = 381
Score = 45.4 bits (106), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 25/44 (56%)
Query: 82 KHDGTMCDFCKQQPIYGIRWKCAECSNYDLCSICYHAEKHNLRH 125
+H+G CD C + G R+KC C +YDLC+ CY + RH
Sbjct: 3 RHEGVSCDACLKGNFRGRRYKCLICYDYDLCASCYESGATTTRH 46
>sp|Q1LZE1|KCMF1_BOVIN E3 ubiquitin-protein ligase KCMF1 OS=Bos taurus GN=KCMF1 PE=2 SV=1
Length = 381
Score = 45.1 bits (105), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 25/44 (56%)
Query: 82 KHDGTMCDFCKQQPIYGIRWKCAECSNYDLCSICYHAEKHNLRH 125
+H+G CD C + G R+KC C +YDLC+ CY + RH
Sbjct: 3 RHEGVSCDACLKGNFRGRRYKCLICYDYDLCASCYESGATTTRH 46
>sp|Q80UY2|KCMF1_MOUSE E3 ubiquitin-protein ligase KCMF1 OS=Mus musculus GN=Kcmf1 PE=2
SV=1
Length = 381
Score = 45.1 bits (105), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 25/44 (56%)
Query: 82 KHDGTMCDFCKQQPIYGIRWKCAECSNYDLCSICYHAEKHNLRH 125
+H+G CD C + G R+KC C +YDLC+ CY + RH
Sbjct: 3 RHEGVSCDACLKGNFRGRRYKCLICYDYDLCASCYESGATTTRH 46
>sp|Q8NEG5|ZSWM2_HUMAN E3 ubiquitin-protein ligase ZSWIM2 OS=Homo sapiens GN=ZSWIM2 PE=1
SV=2
Length = 633
Score = 44.7 bits (104), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 82 KHDGTMCDFCKQQPIYGIRWKCAECSNYDLCSICYHAEKHNLRHRF 127
KH G C+ CKQ PI G +KC EC Y LC C+ + H L H F
Sbjct: 228 KHLGIPCNNCKQFPIEGKCYKCTECIEYHLCQECFDSCCH-LSHTF 272
>sp|A2CI97|DYTN_DANRE Dystrotelin OS=Danio rerio GN=dytn PE=2 SV=1
Length = 648
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 76 SAPTGVKHDGTMCDFCKQQPIYGIRWKCAECSNYDLCSICYHAEKHNLRHR 126
S V+H C CK PI G+R++C +C N LC C+ E+ + +H+
Sbjct: 217 SVSEAVQH-RVHCHACKAFPITGLRYRCLKCLNVHLCQSCFLTERRSRKHK 266
>sp|A2CI98|DYTN_MOUSE Dystrotelin OS=Mus musculus GN=Dytn PE=2 SV=1
Length = 653
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 76 SAPTGVKHDGTMCDFCKQQPIYGIRWKCAECSNYDLCSICYHAEKHNLRH 125
SA V H C C+ PI G+R+ C +C ++D+C +C+ + H H
Sbjct: 217 SAAETVTHP-VRCSVCRTFPIIGLRYHCLKCLDFDICELCFLSGLHKNSH 265
>sp|P34664|YOY6_CAEEL Uncharacterized protein ZK652.6 OS=Caenorhabditis elegans
GN=ZK652.6 PE=4 SV=2
Length = 575
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 29/72 (40%), Gaps = 16/72 (22%)
Query: 77 APTGVKHDGTMCDFCKQQPIYGIRWKCAECSNYDLCSICY----------------HAEK 120
P H+G CD C G R+KC CS+YDLC C+ H E
Sbjct: 3 TPLTGTHEGVSCDGCAFTAFAGNRYKCLRCSDYDLCFSCFTTKNYGDQQTIADIPIHDES 62
Query: 121 HNLRHRFYRINF 132
H ++ ++F
Sbjct: 63 HPMQLILSSVDF 74
>sp|Q9Y048|DTN1_CAEEL Dystrobrevin-1 OS=Caenorhabditis elegans GN=dyb-1 PE=1 SV=1
Length = 590
Score = 42.4 bits (98), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 8/46 (17%)
Query: 87 MCDFCKQQPIYGIRWKCAECSNYDLCSICY--------HAEKHNLR 124
+CD C+ + G R+KC C+NY LC C+ H+ +H ++
Sbjct: 263 VCDACQVRSFTGFRYKCQRCANYQLCQSCFWRGRTSQNHSNEHEMK 308
>sp|Q9D9X6|ZSWM2_MOUSE E3 ubiquitin-protein ligase Zswim2 OS=Mus musculus GN=Zswim2 PE=1
SV=1
Length = 631
Score = 42.0 bits (97), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 82 KHDGTMCDFCKQQPIYGIRWKCAECSNYDLCSICYHAEKHNLRHRF 127
KH G C+ C Q PI G +KC EC Y LC C+ + H+ H F
Sbjct: 229 KHLGIPCNNCNQLPIEGRCYKCTECVEYHLCQECFDSCCHS-SHAF 273
>sp|Q9Y4J8|DTNA_HUMAN Dystrobrevin alpha OS=Homo sapiens GN=DTNA PE=1 SV=2
Length = 743
Score = 42.0 bits (97), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 8/45 (17%)
Query: 88 CDFCKQQPIYGIRWKCAECSNYDLCSICY--------HAEKHNLR 124
C +C + + G R++C +C NY LC C+ H+ +H ++
Sbjct: 243 CSYCHSESMMGFRYRCQQCHNYQLCQDCFWRGHAGGSHSNQHQMK 287
>sp|Q9D2N4|DTNA_MOUSE Dystrobrevin alpha OS=Mus musculus GN=Dtna PE=1 SV=2
Length = 746
Score = 42.0 bits (97), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 8/45 (17%)
Query: 88 CDFCKQQPIYGIRWKCAECSNYDLCSICY--------HAEKHNLR 124
C +C + + G R++C +C NY LC C+ H+ +H ++
Sbjct: 243 CSYCHSESMMGFRYRCQQCHNYQLCQDCFWRGHAGGSHSNQHQMK 287
>sp|Q6KAQ7|ZZZ3_MOUSE ZZ-type zinc finger-containing protein 3 OS=Mus musculus GN=Zzz3
PE=2 SV=2
Length = 910
Score = 41.6 bits (96), Expect = 0.006, Method: Composition-based stats.
Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 11/54 (20%)
Query: 81 VKHDGTMCDFCKQQPIYGIRWKCAECS---NYDLCSIC--------YHAEKHNL 123
V+H G CD C +PI G+RW C +C + D C C H E H L
Sbjct: 823 VQHVGFKCDNCGVEPIQGVRWHCQDCPPEMSLDFCDSCSDCPHETDIHKEDHQL 876
>sp|Q8IYH5|ZZZ3_HUMAN ZZ-type zinc finger-containing protein 3 OS=Homo sapiens GN=ZZZ3
PE=1 SV=1
Length = 903
Score = 41.6 bits (96), Expect = 0.006, Method: Composition-based stats.
Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 11/54 (20%)
Query: 81 VKHDGTMCDFCKQQPIYGIRWKCAECS---NYDLCSIC--------YHAEKHNL 123
V+H G CD C +PI G+RW C +C + D C C H E H L
Sbjct: 816 VQHVGFKCDNCGIEPIQGVRWHCQDCPPEMSLDFCDSCSDCLHETDIHKEDHQL 869
>sp|O60941|DTNB_HUMAN Dystrobrevin beta OS=Homo sapiens GN=DTNB PE=1 SV=1
Length = 627
Score = 41.2 bits (95), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 25/45 (55%), Gaps = 8/45 (17%)
Query: 88 CDFCKQQPIYGIRWKCAECSNYDLCSICY--------HAEKHNLR 124
C +C+ + + G R++C +C NY LC C+ H+ +H ++
Sbjct: 243 CSYCRCESMMGFRYRCQQCHNYQLCQNCFWRGHAGGPHSNQHQMK 287
>sp|Q9SRU2|BIG_ARATH Auxin transport protein BIG OS=Arabidopsis thaliana GN=BIG PE=1 SV=2
Length = 5098
Score = 41.2 bits (95), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
Query: 75 DSAPTGVKHDGTMCDFCKQQPIYGIRWKCAECSNYDLCSICYHA 118
DS + V++ CD C PI RW C C ++DLC CY
Sbjct: 2608 DSITSSVQY---CCDGCSTVPILRRRWHCTVCPDFDLCEACYEV 2648
>sp|O70585|DTNB_MOUSE Dystrobrevin beta OS=Mus musculus GN=Dtnb PE=1 SV=3
Length = 659
Score = 40.8 bits (94), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 8/45 (17%)
Query: 88 CDFCKQQPIYGIRWKCAECSNYDLCSICY--------HAEKHNLR 124
C +C + + G R++C +C NY LC C+ H+ +H ++
Sbjct: 243 CSYCHCESMMGFRYRCQQCHNYQLCQNCFWRGHASGAHSNQHQMK 287
>sp|P84060|DTNB_RAT Dystrobrevin beta OS=Rattus norvegicus GN=Dtnb PE=2 SV=2
Length = 654
Score = 40.4 bits (93), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 8/45 (17%)
Query: 88 CDFCKQQPIYGIRWKCAECSNYDLCSICY--------HAEKHNLR 124
C +C + + G R++C +C NY LC C+ H+ +H ++
Sbjct: 243 CSYCHCESMMGFRYRCQQCHNYQLCQNCFWRGHAGGPHSNQHQMK 287
>sp|B9G2A8|BIG_ORYSJ Auxin transport protein BIG OS=Oryza sativa subsp. japonica
GN=Os09g0247700 PE=2 SV=1
Length = 4965
Score = 39.7 bits (91), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Query: 75 DSAPTGVKHDGTMCDFCKQQPIYGIRWKCAECSNYDLCSICY 116
D A + V++ CD C PI RW C C ++DLC CY
Sbjct: 2464 DPATSSVQY---CCDGCSTVPILRRRWHCNICPDFDLCETCY 2502
>sp|Q6JHU9|CBP_RAT CREB-binding protein OS=Rattus norvegicus GN=Crebbp PE=2 SV=1
Length = 2442
Score = 39.7 bits (91), Expect = 0.026, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Query: 88 CDFCKQQPIYGIRWKCAECSNYDLCSICYHAEKHNLRHRFYRINFPGSERVLLEPRRKSK 147
C+ CK RW C C +YDLC CY+ + H + + + EP+ KS
Sbjct: 1708 CNECKHH--VETRWHCTVCEDYDLCINCYNTKSHTHKMVKWGLGLDDEGSSQGEPQSKSP 1765
Query: 148 KISVR 152
+ S R
Sbjct: 1766 QESRR 1770
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.137 0.444
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 112,635,140
Number of Sequences: 539616
Number of extensions: 4970415
Number of successful extensions: 8992
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 8835
Number of HSP's gapped (non-prelim): 126
length of query: 276
length of database: 191,569,459
effective HSP length: 116
effective length of query: 160
effective length of database: 128,974,003
effective search space: 20635840480
effective search space used: 20635840480
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)