Query psy7971
Match_columns 276
No_of_seqs 255 out of 348
Neff 5.5
Searched_HMMs 29240
Date Fri Aug 16 23:32:07 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7971.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7971hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dk3_A E3 ubiquitin-protein li 99.9 3.9E-28 1.3E-32 186.8 5.9 76 146-227 8-83 (86)
2 3dkm_A E3 ubiquitin-protein li 99.9 1.7E-27 5.7E-32 184.5 3.6 75 142-222 10-84 (89)
3 2dk3_A E3 ubiquitin-protein li 99.9 2.8E-23 9.7E-28 159.7 6.3 76 2-77 3-80 (86)
4 3dkm_A E3 ubiquitin-protein li 99.8 5.6E-20 1.9E-24 142.4 5.3 64 12-75 19-84 (89)
5 2fc7_A ZZZ3 protein; structure 99.7 7.3E-18 2.5E-22 129.4 6.0 66 71-136 7-79 (82)
6 2e5r_A Dystrobrevin alpha; ZZ 99.7 6.6E-18 2.3E-22 123.6 4.4 56 76-132 3-62 (63)
7 2dip_A Zinc finger SWIM domain 99.7 8.7E-18 3E-22 133.0 5.2 64 80-144 26-89 (98)
8 1tot_A CREB-binding protein; z 99.4 2.2E-14 7.5E-19 101.2 2.2 49 82-134 3-51 (52)
9 1v5n_A PDI-like hypothetical p 88.6 0.16 5.5E-06 38.6 1.6 30 86-117 48-77 (89)
10 3nis_A E3 ubiquitin-protein li 86.8 0.76 2.6E-05 34.6 4.4 50 80-132 3-55 (82)
11 3ny3_A E3 ubiquitin-protein li 83.1 0.63 2.2E-05 34.5 2.4 33 99-132 16-51 (75)
12 2d8v_A Zinc finger FYVE domain 51.1 14 0.00049 26.7 3.4 46 86-135 9-57 (67)
13 2kkc_A Sequestosome-1; P62, PB 41.3 1.9 6.5E-05 33.7 -2.7 33 27-65 65-97 (102)
14 2ktr_A Sequestosome-1; autopha 34.6 2.9 9.8E-05 33.6 -2.7 33 27-65 80-112 (117)
15 1kbe_A Kinase suppressor of RA 34.2 21 0.00072 23.9 2.0 20 86-107 15-34 (49)
16 2ffw_A Midline-1; B-BOX, ring 31.2 19 0.00064 26.1 1.5 32 85-117 30-61 (78)
17 1vfy_A Phosphatidylinositol-3- 27.6 39 0.0013 24.0 2.7 36 81-117 7-43 (73)
18 2xdp_A Lysine-specific demethy 22.9 75 0.0026 25.4 3.7 27 193-221 68-94 (123)
19 2qqr_A JMJC domain-containing 22.7 77 0.0026 25.2 3.7 27 193-221 67-93 (118)
20 2vrw_B P95VAV, VAV1, proto-onc 22.5 46 0.0016 30.6 2.8 31 85-117 357-390 (406)
21 2did_A Tripartite motif protei 21.6 73 0.0025 20.7 2.9 32 99-132 18-49 (53)
22 2jun_A Midline-1; B-BOX, TRIM, 21.6 38 0.0013 24.9 1.6 32 85-117 3-34 (101)
23 1qp2_A Protein (PSAE protein); 20.9 2.4E+02 0.0083 20.4 5.8 46 20-75 9-62 (70)
24 2a7y_A Hypothetical protein RV 20.1 95 0.0032 23.3 3.5 37 175-214 22-59 (83)
No 1
>2dk3_A E3 ubiquitin-protein ligase hectd1; MIB-HERC2 domain, HECT domain containing protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.19.1
Probab=99.94 E-value=3.9e-28 Score=186.78 Aligned_cols=76 Identities=37% Similarity=0.687 Sum_probs=68.8
Q ss_pred cCcceeeeeecCceEeecCCCccccCCCCCCCcceEEEeCCCCcCCCCceeEEEecCCCceeeeeccCCeeeEEEeeCCc
Q psy7971 146 SKKISVRGIFPGARVVRGVDWQWEDQDGGNGRRGKVNEVQDWSAASPRSAAYIVWDNGAKNLYRVGFEGMADLKVLNDAK 225 (276)
Q Consensus 146 ~~~~~~~g~~~g~~v~rG~DW~w~dQDgg~g~~G~V~~~~~w~~~~~~~~v~V~Wd~g~~n~YR~G~~g~~Dl~~~~~~~ 225 (276)
.+++.+++|++|+||+|||||||+|||||+|++|||+++. .+.+|.|+||||..|+||+|++|+|||++++.++
T Consensus 8 ~r~~~~~~i~vG~rVVRG~DWkWgdQDGG~G~~GtV~~~~------~~~wv~V~Wd~G~~n~YR~G~~G~~DL~v~~~~~ 81 (86)
T 2dk3_A 8 VRSQVLKYMVPGARVIRGLDWKWRDQDGSPQGEGTVTGEL------HNGWIDVTWDAGGSNSYRMGAEGKFDLKLAPGYS 81 (86)
T ss_dssp CSSCGGGTCCTTSEEEECTTCCSCCTTCSSCCCEEBCSCC------CSSEEEEEETTTEEEEEEBSTTSCBCEEECTTCC
T ss_pred hhhhhhhccccCCEEEeCCCCcccccCCCCCcceEEEEEc------CCCEEEEEeCCCCeeeEEecCCCCEEEEEecCCc
Confidence 4567789999999999999999999999999999999753 2556999999999999999999999999999887
Q ss_pred cc
Q psy7971 226 AL 227 (276)
Q Consensus 226 ~~ 227 (276)
|.
T Consensus 82 ~~ 83 (86)
T 2dk3_A 82 GP 83 (86)
T ss_dssp CC
T ss_pred CC
Confidence 75
No 2
>3dkm_A E3 ubiquitin-protein ligase hectd1; UBL conjugation, UBL conjugation pathway, structural genomics consortium, SGC;, ANK repeat, NPPSFA; 1.60A {Homo sapiens} SCOP: b.34.19.1
Probab=99.93 E-value=1.7e-27 Score=184.46 Aligned_cols=75 Identities=39% Similarity=0.683 Sum_probs=67.9
Q ss_pred cccccCcceeeeeecCceEeecCCCccccCCCCCCCcceEEEeCCCCcCCCCceeEEEecCCCceeeeeccCCeeeEEEe
Q psy7971 142 PRRKSKKISVRGIFPGARVVRGVDWQWEDQDGGNGRRGKVNEVQDWSAASPRSAAYIVWDNGAKNLYRVGFEGMADLKVL 221 (276)
Q Consensus 142 pRr~~~~~~~~g~~~g~~v~rG~DW~w~dQDgg~g~~G~V~~~~~w~~~~~~~~v~V~Wd~g~~n~YR~G~~g~~Dl~~~ 221 (276)
-|.+.+.+.+++|++|+||+|||||+|+||||++|++|||+++. +++++.|+||+|.+|+||+|++|+|||+++
T Consensus 10 ~~~~~~~q~lk~i~vG~RVVRGpDWkWgdQDGg~g~~GtV~~~~------~~gwv~V~Wd~G~~n~YR~G~~G~~DL~~a 83 (89)
T 3dkm_A 10 GRENLYFQGLKYMVPGARVTRGLDWKWRDQDGSPQGEGTVTGEL------HNGWIDVTWDAGGSNSYRMGAEGKFDLKLA 83 (89)
T ss_dssp CCCCHHHHHHHHCSTTCEEEECTTCCCTTTTSSTTCCEEECSCC------BTTEEEEEETTSCEEEEEBSGGGCBCEEEC
T ss_pred hhHHHHHHHhhccccCcEEEeCCCCcccccCCCCCcccEEeEec------CCCeEEEEeCCCCeeeEeecCCCcEeeEEc
Confidence 46677788899999999999999999999999999999999642 356689999999999999999999999996
Q ss_pred e
Q psy7971 222 N 222 (276)
Q Consensus 222 ~ 222 (276)
.
T Consensus 84 ~ 84 (89)
T 3dkm_A 84 P 84 (89)
T ss_dssp T
T ss_pred c
Confidence 5
No 3
>2dk3_A E3 ubiquitin-protein ligase hectd1; MIB-HERC2 domain, HECT domain containing protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.19.1
Probab=99.88 E-value=2.8e-23 Score=159.74 Aligned_cols=76 Identities=42% Similarity=0.686 Sum_probs=71.0
Q ss_pred CCCCcccccchhhccccceEEeCCCCccCCcCCCCCceeEEEeeCCCCceEEEEcCCCCcceee--cCceeeeeecCC
Q psy7971 2 EGSSGTRANRFAMEGVGARVIRGPDWKWGKQDGGDGHVGTVRNFESPEEVVVVWDNGTAANYRC--AGAFDLRILDSA 77 (276)
Q Consensus 2 ~~~~~~~~~~~~~~~vG~RVvRGpdWkWg~qDgg~g~vGtVv~~ss~eevvV~WD~G~~~~YR~--~g~~DL~lvD~a 77 (276)
.|||..|.+++..|.+|+||||||||||++|||+++++|||+++..++++.|+||++..++||+ +++|||++++-+
T Consensus 3 ~~~~~~r~~~~~~i~vG~rVVRG~DWkWgdQDGG~G~~GtV~~~~~~~wv~V~Wd~G~~n~YR~G~~G~~DL~v~~~~ 80 (86)
T 2dk3_A 3 SGSSGVRSQVLKYMVPGARVIRGLDWKWRDQDGSPQGEGTVTGELHNGWIDVTWDAGGSNSYRMGAEGKFDLKLAPGY 80 (86)
T ss_dssp CCCCCCSSCGGGTCCTTSEEEECTTCCSCCTTCSSCCCEEBCSCCCSSEEEEEETTTEEEEEEBSTTSCBCEEECTTC
T ss_pred cchhhhhhhhhhccccCCEEEeCCCCcccccCCCCCcceEEEEEcCCCEEEEEeCCCCeeeEEecCCCCEEEEEecCC
Confidence 4788899999999999999999999999999999999999999988999999999999999998 589999998643
No 4
>3dkm_A E3 ubiquitin-protein ligase hectd1; UBL conjugation, UBL conjugation pathway, structural genomics consortium, SGC;, ANK repeat, NPPSFA; 1.60A {Homo sapiens} SCOP: b.34.19.1
Probab=99.79 E-value=5.6e-20 Score=142.37 Aligned_cols=64 Identities=41% Similarity=0.684 Sum_probs=58.3
Q ss_pred hhhccccceEEeCCCCccCCcCCCCCceeEEEeeCCCCceEEEEcCCCCcceee--cCceeeeeec
Q psy7971 12 FAMEGVGARVIRGPDWKWGKQDGGDGHVGTVRNFESPEEVVVVWDNGTAANYRC--AGAFDLRILD 75 (276)
Q Consensus 12 ~~~~~vG~RVvRGpdWkWg~qDgg~g~vGtVv~~ss~eevvV~WD~G~~~~YR~--~g~~DL~lvD 75 (276)
+..+.+|+||||||||||++|||+++++|+|+++..++++.|+||++..++||+ .++|||.++.
T Consensus 19 lk~i~vG~RVVRGpDWkWgdQDGg~g~~GtV~~~~~~gwv~V~Wd~G~~n~YR~G~~G~~DL~~a~ 84 (89)
T 3dkm_A 19 LKYMVPGARVTRGLDWKWRDQDGSPQGEGTVTGELHNGWIDVTWDAGGSNSYRMGAEGKFDLKLAP 84 (89)
T ss_dssp HHHCSTTCEEEECTTCCCTTTTSSTTCCEEECSCCBTTEEEEEETTSCEEEEEBSGGGCBCEEECT
T ss_pred hhccccCcEEEeCCCCcccccCCCCCcccEEeEecCCCeEEEEeCCCCeeeEeecCCCcEeeEEcc
Confidence 345679999999999999999999999999999878899999999999999998 5899999863
No 5
>2fc7_A ZZZ3 protein; structure genomics, ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=99.71 E-value=7.3e-18 Score=129.43 Aligned_cols=66 Identities=29% Similarity=0.658 Sum_probs=59.3
Q ss_pred eeeecCCCCCCCCCCCcCCCCCCCceeeeeeeeccCCC---CeeecccccC----cccCCCceeEEEeeCCCc
Q psy7971 71 LRILDSAPTGVKHDGTMCDFCKQQPIYGIRWKCAECSN---YDLCSICYHA----EKHNLRHRFYRINFPGSE 136 (276)
Q Consensus 71 L~lvD~ap~~v~H~~v~Cd~C~~~pI~G~RykC~~C~d---fDLC~~C~~~----~~H~~~H~f~ri~~P~~~ 136 (276)
|..+++++..++|.++.||+|.+.||.|+||||++|+| ||||+.||.. ..|++.|+|.+|.+|...
T Consensus 7 ~~~~~~~~~~~~H~~~~Cd~C~~~pI~G~RykC~~C~d~~~yDLC~~C~~~g~~~~~H~~~H~~~~i~~~~~p 79 (82)
T 2fc7_A 7 GQQMQAESGFVQHVGFKCDNCGIEPIQGVRWHCQDCPPEMSLDFCDSCSDCLHETDIHKEDHQLEPIYRSSGP 79 (82)
T ss_dssp CSSSCSSTTSCEESSCCCSSSCCSSEESCEEEESSSCSSSCCEEEGGGTTCCCCCSSCCSSSCEEEECSCCCC
T ss_pred hhhhhccccCCeeCcCCCCCCCCCcceeceEECCcCCCCcceecHHHHHhCccccCCCCCCCCEEEeeCCCCC
Confidence 44567777789999999999999999999999999999 9999999985 679999999999998753
No 6
>2e5r_A Dystrobrevin alpha; ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=6.6e-18 Score=123.61 Aligned_cols=56 Identities=30% Similarity=0.836 Sum_probs=50.8
Q ss_pred CCCCCCCCCCCcCCCCCCCceeeeeeeeccCCCCeeecccccCc----ccCCCceeEEEee
Q psy7971 76 SAPTGVKHDGTMCDFCKQQPIYGIRWKCAECSNYDLCSICYHAE----KHNLRHRFYRINF 132 (276)
Q Consensus 76 ~ap~~v~H~~v~Cd~C~~~pI~G~RykC~~C~dfDLC~~C~~~~----~H~~~H~f~ri~~ 132 (276)
+++.++.|+ +.||+|.+.||.|+||||++|+|||||+.||..+ .|++.|+|.+|.+
T Consensus 3 s~~~~v~H~-~~Cd~C~~~pi~G~RykC~~C~d~DLC~~C~~~g~~~~~H~~~H~~~~~~t 62 (63)
T 2e5r_A 3 SGSSGVFHP-VECSYCHSESMMGFRYRCQQCHNYQLCQDCFWRGHAGGSHSNQHQMKEYTS 62 (63)
T ss_dssp CCSSSCCSC-SCCSSSCCCSSCSCEEEESSCSSCEECHHHHHHCCCCSSSCTTCCEEEECC
T ss_pred CCcCCceeC-CCCcCCCCcceecceEEecCCCCchhHHHHHhCCCcCCCCCCCCCEEEEeC
Confidence 356688998 9999999999999999999999999999999965 4999999999875
No 7
>2dip_A Zinc finger SWIM domain-containing protein 2; ZZ domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=99.70 E-value=8.7e-18 Score=133.02 Aligned_cols=64 Identities=39% Similarity=0.649 Sum_probs=57.9
Q ss_pred CCCCCCCcCCCCCCCceeeeeeeeccCCCCeeecccccCcccCCCceeEEEeeCCCceeeecccc
Q psy7971 80 GVKHDGTMCDFCKQQPIYGIRWKCAECSNYDLCSICYHAEKHNLRHRFYRINFPGSERVLLEPRR 144 (276)
Q Consensus 80 ~v~H~~v~Cd~C~~~pI~G~RykC~~C~dfDLC~~C~~~~~H~~~H~f~ri~~P~~~~V~lepRr 144 (276)
.++|+++.||+|.+.||.|+||||+.|+|||||+.||..+.| +.|+|.++.+|...-..++.|.
T Consensus 26 ~~~H~gv~Cd~C~~~pI~G~RykC~~C~d~DLC~~C~~~~~H-~~H~f~~i~~~~~~w~~~e~~~ 89 (98)
T 2dip_A 26 LDKHLGIPCNNCKQFPIEGKCYKCTECIEYHLCQECFDSYCH-LSHTFTFREKRNQKWRSLEKRA 89 (98)
T ss_dssp CSSCCCCCCSSSCCSSCCSCEEEESSSSSCEEEHHHHHTTSG-GGSCEEECCSSSCCCEECCCCC
T ss_pred ccccCCCCCcCCCCCCcccCeEECCCCCCccHHHHHHccCCC-CCCCeeEecCCCCCCccccccc
Confidence 589999999999999999999999999999999999999998 8999999999877655566654
No 8
>1tot_A CREB-binding protein; zinc binding, CBP, TAZ2, transferase; NMR {Mus musculus} SCOP: g.44.1.6
Probab=99.44 E-value=2.2e-14 Score=101.17 Aligned_cols=49 Identities=31% Similarity=0.823 Sum_probs=43.5
Q ss_pred CCCCCcCCCCCCCceeeeeeeeccCCCCeeecccccCcccCCCceeEEEeeCC
Q psy7971 82 KHDGTMCDFCKQQPIYGIRWKCAECSNYDLCSICYHAEKHNLRHRFYRINFPG 134 (276)
Q Consensus 82 ~H~~v~Cd~C~~~pI~G~RykC~~C~dfDLC~~C~~~~~H~~~H~f~ri~~P~ 134 (276)
.|..+.||+|.+. | |.||||++|+|||||+.||..+.| .|+|.++..|.
T Consensus 3 ~~~~~~Cd~C~~~-i-g~R~~C~~C~dyDLC~~C~~~~~H--~H~m~~~~~~l 51 (52)
T 1tot_A 3 DRFVYTCNECKHH-V-ETRWHCTVCEDYDLCINCYNTKSH--THKMVKWGLGL 51 (52)
T ss_dssp CSSCEEETTTTEE-E-SSEEEESSSSSCEECHHHHHHHCC--CSSEEEECSSC
T ss_pred CcCEEECCCCCCC-C-cceEEcCCCCCchhHHHHHhCCCC--CCceEEecCCC
Confidence 3557899999965 5 999999999999999999999888 79999998764
No 9
>1v5n_A PDI-like hypothetical protein AT1G60420; DC1 domain, zinc binding domain, PDI-like protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.49.1.3
Probab=88.63 E-value=0.16 Score=38.65 Aligned_cols=30 Identities=30% Similarity=0.706 Sum_probs=25.8
Q ss_pred CcCCCCCCCceeeeeeeeccCCCCeeeccccc
Q psy7971 86 TMCDFCKQQPIYGIRWKCAECSNYDLCSICYH 117 (276)
Q Consensus 86 v~Cd~C~~~pI~G~RykC~~C~dfDLC~~C~~ 117 (276)
..||.|.. .+.|.+|+|..| ||+|=..|..
T Consensus 48 ~~C~~C~~-~~~~~~Y~C~~C-~f~lH~~Ca~ 77 (89)
T 1v5n_A 48 YTCDKCEE-EGTIWSYHCDEC-DFDLHAKCAL 77 (89)
T ss_dssp CCCTTTSC-CCCSCEEECTTT-CCCCCHHHHH
T ss_pred eEeCCCCC-cCCCcEEEcCCC-CCeEcHHhcC
Confidence 68999995 478999999999 7888888865
No 10
>3nis_A E3 ubiquitin-protein ligase UBR1; E3 ubiquitin ligase, UBR BOX, zinc-binding protein, N-END RU ligase, metal binding protein; 1.68A {Saccharomyces cerevisiae} PDB: 3nii_A 3nij_A 3nih_A 3nik_A 3nim_A 3nin_A 3nil_A 3nit_A
Probab=86.76 E-value=0.76 Score=34.65 Aligned_cols=50 Identities=26% Similarity=0.516 Sum_probs=34.7
Q ss_pred CCCCCCCcCCCCCCCceeeeeeeeccCC---CCeeecccccCcccCCCceeEEEee
Q psy7971 80 GVKHDGTMCDFCKQQPIYGIRWKCAECS---NYDLCSICYHAEKHNLRHRFYRINF 132 (276)
Q Consensus 80 ~v~H~~v~Cd~C~~~pI~G~RykC~~C~---dfDLC~~C~~~~~H~~~H~f~ri~~ 132 (276)
...|++-.|.- .-..--+-|+|..|. .+-||..||....| ..|.+.....
T Consensus 3 ~~~h~g~~Cg~--vf~~ge~~Y~C~~C~~d~tcvlC~~CF~~s~H-~gH~~~~~~s 55 (82)
T 3nis_A 3 VHKHTGRNCGR--KFKIGEPLYRCHECGCDDTCVLCIHCFNPKDH-VNHHVCTDIC 55 (82)
T ss_dssp CCCCTTSCCCC--BCCTTCEEEEETTTBSSTTCCBCTTTCCGGGG-TTSCEEEEEC
T ss_pred ccccCCCCCCC--cccCCCEEEEeeccCCCCCceEchhhCCCCCc-CCceEEEEEe
Confidence 35687777741 111123579999995 56789999999888 4888876654
No 11
>3ny3_A E3 ubiquitin-protein ligase UBR2; zinc finger-like, ubiquitin ligase, protein binding, lygase,; 1.60A {Homo sapiens} PDB: 3ny2_A 3ny1_A
Probab=83.09 E-value=0.63 Score=34.49 Aligned_cols=33 Identities=24% Similarity=0.630 Sum_probs=26.1
Q ss_pred eeeeeccCC---CCeeecccccCcccCCCceeEEEee
Q psy7971 99 IRWKCAECS---NYDLCSICYHAEKHNLRHRFYRINF 132 (276)
Q Consensus 99 ~RykC~~C~---dfDLC~~C~~~~~H~~~H~f~ri~~ 132 (276)
+-|+|..|. ..-||..||....| ..|.+..+..
T Consensus 16 ~~Y~C~~C~~d~tc~lC~~CF~~~~H-~gH~~~~~~s 51 (75)
T 3ny3_A 16 PTYSCRDCAVDPTCVLCMECFLGSIH-RDHRYRMTTS 51 (75)
T ss_dssp EEEEETTTBSSTTCCBCHHHHHTSGG-GGSCEEEEEC
T ss_pred EEEECccCCCCCCeeEChHHCCCCCc-CCceEEEEEc
Confidence 568999995 45689999999888 5888877654
No 12
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=51.13 E-value=14 Score=26.73 Aligned_cols=46 Identities=17% Similarity=0.446 Sum_probs=32.5
Q ss_pred CcCCCCCCCceeeeeeeeccCCCCeeecccccC---cccCCCceeEEEeeCCC
Q psy7971 86 TMCDFCKQQPIYGIRWKCAECSNYDLCSICYHA---EKHNLRHRFYRINFPGS 135 (276)
Q Consensus 86 v~Cd~C~~~pI~G~RykC~~C~dfDLC~~C~~~---~~H~~~H~f~ri~~P~~ 135 (276)
..|-.|... .-++|.-|.+-=+|..||.. +.-...|..+++..|..
T Consensus 9 pWC~ICneD----AtlrC~gCdgDLYC~rC~rE~H~~~d~r~Hk~v~y~~~~k 57 (67)
T 2d8v_A 9 PWCCICNED----ATLRCAGCDGDLYCARCFREGHDNFDLKEHQTSPYHPRRP 57 (67)
T ss_dssp SSCTTTCSC----CCEEETTTTSEEECSSHHHHHTTTSSTTTCCEECCCCSSS
T ss_pred CeeEEeCCC----CeEEecCCCCceehHHHHHHHccchhhhccceeeccCCCC
Confidence 467788743 34899999876669999973 23346788777766643
No 13
>2kkc_A Sequestosome-1; P62, PB1, autophagy, ubiquitin-proteasome system, NF-KB signaling, alternative splicing, apoptosis, cytoplasm, differentiation; NMR {Rattus norvegicus} PDB: 2ktr_B
Probab=41.27 E-value=1.9 Score=33.73 Aligned_cols=33 Identities=18% Similarity=0.272 Sum_probs=26.1
Q ss_pred CccCCcCCCCCceeEEEeeCCCCceEEEEcCCCCcceee
Q psy7971 27 WKWGKQDGGDGHVGTVRNFESPEEVVVVWDNGTAANYRC 65 (276)
Q Consensus 27 WkWg~qDgg~g~vGtVv~~ss~eevvV~WD~G~~~~YR~ 65 (276)
-+|.|+|| ++|.|++++++.+++.......+|+
T Consensus 65 l~Y~DedG------DlItiSsDeEL~~Al~~~~~~~lRl 97 (102)
T 2kkc_A 65 AHYRAERG------DLVAFSSDEELTMAMSYVKDDIFRI 97 (102)
T ss_dssp EEEECTTC------CEEEECSHHHHHHHHHHCCSSEEEE
T ss_pred EEEECCCC------CEEEecCHHHHHHHHHhcCCCeEEE
Confidence 57888885 7999999999988887766556664
No 14
>2ktr_A Sequestosome-1; autophagy, NF-KB signaling, HOMO-oligomer, PB1 dimer, signaling protein, transport protein; NMR {Rattus norvegicus}
Probab=34.58 E-value=2.9 Score=33.57 Aligned_cols=33 Identities=18% Similarity=0.272 Sum_probs=25.5
Q ss_pred CccCCcCCCCCceeEEEeeCCCCceEEEEcCCCCcceee
Q psy7971 27 WKWGKQDGGDGHVGTVRNFESPEEVVVVWDNGTAANYRC 65 (276)
Q Consensus 27 WkWg~qDgg~g~vGtVv~~ss~eevvV~WD~G~~~~YR~ 65 (276)
-+|.|+|| ++|.|++++++.+++.......+|+
T Consensus 80 l~YkDEdG------DlItISsDeEL~~Al~~~~~~~lRl 112 (117)
T 2ktr_A 80 AHYRAERG------DLVAFSSDEELTMAMSYVKDDIFRI 112 (117)
T ss_dssp EEEECTTC------CEEEECSHHHHHHHHHHCCSSEEEE
T ss_pred EEEECCCC------CEEEecCHHHHHHHHHhcCCCeEEE
Confidence 46888885 7999999999988877665555553
No 15
>1kbe_A Kinase suppressor of RAS; KSR, cysteine-rich domain, zinc- binding protein, signaling protein; NMR {Mus musculus} SCOP: g.49.1.1 PDB: 1kbf_A
Probab=34.22 E-value=21 Score=23.95 Aligned_cols=20 Identities=35% Similarity=1.112 Sum_probs=14.2
Q ss_pred CcCCCCCCCceeeeeeeeccCC
Q psy7971 86 TMCDFCKQQPIYGIRWKCAECS 107 (276)
Q Consensus 86 v~Cd~C~~~pI~G~RykC~~C~ 107 (276)
..||.|+..-..| |+|..|.
T Consensus 15 t~C~~C~k~i~~G--~kC~~Ck 34 (49)
T 1kbe_A 15 QVCNVCQKSMIFG--VKCKHCR 34 (49)
T ss_dssp CCCSSSCCSSCCE--EEETTTT
T ss_pred cCccccCceeECc--CCCCCCC
Confidence 7899998544444 7887773
No 16
>2ffw_A Midline-1; B-BOX, ring finger, zinc-finger, ligase; NMR {Homo sapiens}
Probab=31.18 E-value=19 Score=26.12 Aligned_cols=32 Identities=28% Similarity=0.794 Sum_probs=22.9
Q ss_pred CCcCCCCCCCceeeeeeeeccCCCCeeeccccc
Q psy7971 85 GTMCDFCKQQPIYGIRWKCAECSNYDLCSICYH 117 (276)
Q Consensus 85 ~v~Cd~C~~~pI~G~RykC~~C~dfDLC~~C~~ 117 (276)
.+.||.|...+-.-.--.|+.|..+ ||+.|..
T Consensus 30 ~v~C~~C~~~~~~~A~ksCl~C~~s-~C~~hl~ 61 (78)
T 2ffw_A 30 KVLCQFCDQDPAQDAVKTCVTCEVS-YCDECLK 61 (78)
T ss_dssp CCBCSSCCSSSCCBCCEEETTTTEE-ECHHHHH
T ss_pred CccCCcCCCCCCCCCeeEccCccch-hhhhhhH
Confidence 5889999754412233469999875 8999985
No 17
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=27.58 E-value=39 Score=23.98 Aligned_cols=36 Identities=17% Similarity=0.496 Sum_probs=26.1
Q ss_pred CCCCCCcCCCCCCC-ceeeeeeeeccCCCCeeeccccc
Q psy7971 81 VKHDGTMCDFCKQQ-PIYGIRWKCAECSNYDLCSICYH 117 (276)
Q Consensus 81 v~H~~v~Cd~C~~~-pI~G~RykC~~C~dfDLC~~C~~ 117 (276)
.+-+.-.|..|+.. .+.-.|++|..|-.. +|..|-.
T Consensus 7 ~W~~~~~C~~C~~~F~~~~RrHHCR~CG~v-~C~~Cs~ 43 (73)
T 1vfy_A 7 DWIDSDACMICSKKFSLLNRKHHCRSCGGV-FCQEHSS 43 (73)
T ss_dssp CCCCCSBCTTTCCBCBTTBCCEECTTTCCE-ECGGGSC
T ss_pred cCccCCcccCCCCccCCccccccCCCCCEE-EcccccC
Confidence 34445689999853 345678999999864 8999953
No 18
>2xdp_A Lysine-specific demethylase 4C; oxidoreductase, histone modification; 1.56A {Homo sapiens}
Probab=22.88 E-value=75 Score=25.42 Aligned_cols=27 Identities=19% Similarity=0.422 Sum_probs=16.9
Q ss_pred CceeEEEecCCCceeeeeccCCeeeEEEe
Q psy7971 193 RSAAYIVWDNGAKNLYRVGFEGMADLKVL 221 (276)
Q Consensus 193 ~~~v~V~Wd~g~~n~YR~G~~g~~Dl~~~ 221 (276)
...|.|+|+.|. .|..-|.|.....++
T Consensus 68 G~~V~V~W~DG~--~y~a~f~g~~~~~~Y 94 (123)
T 2xdp_A 68 GEVVQVKWPDGK--LYGAKYFGSNIAHMY 94 (123)
T ss_dssp TCEEEEECTTSC--EEEEEEEEEEEEEEE
T ss_pred CCEEEEEcCCCC--EEeEEEeeeeeEEEE
Confidence 344689999986 555555555544443
No 19
>2qqr_A JMJC domain-containing histone demethylation protein 3A; histone lysine demethylase, tandem hybrid tudor domains, metal binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2qqs_A* 2gfa_A* 2gf7_A*
Probab=22.70 E-value=77 Score=25.18 Aligned_cols=27 Identities=15% Similarity=0.468 Sum_probs=17.6
Q ss_pred CceeEEEecCCCceeeeeccCCeeeEEEe
Q psy7971 193 RSAAYIVWDNGAKNLYRVGFEGMADLKVL 221 (276)
Q Consensus 193 ~~~v~V~Wd~g~~n~YR~G~~g~~Dl~~~ 221 (276)
...|.|+|+.|. .|..-|.|.....++
T Consensus 67 G~~V~V~W~DG~--~y~a~f~g~~~~~~Y 93 (118)
T 2qqr_A 67 GEVVQVRWTDGQ--VYGAKFVASHPIQMY 93 (118)
T ss_dssp TCEEEEECTTSC--EEEEEEEEEEEEEEE
T ss_pred CCEEEEEcCCCC--EeeeEEeceeEEEEE
Confidence 344689999994 666666666554443
No 20
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=22.46 E-value=46 Score=30.56 Aligned_cols=31 Identities=23% Similarity=0.581 Sum_probs=24.4
Q ss_pred CCcCCCCCCCceee---eeeeeccCCCCeeeccccc
Q psy7971 85 GTMCDFCKQQPIYG---IRWKCAECSNYDLCSICYH 117 (276)
Q Consensus 85 ~v~Cd~C~~~pI~G---~RykC~~C~dfDLC~~C~~ 117 (276)
-..|+.|+ ..+.| -+|+|..|- +..|..|..
T Consensus 357 ~t~C~~C~-~~~~g~~~qg~~C~~C~-~~~h~~C~~ 390 (406)
T 2vrw_B 357 TTSCKACQ-MLLRGTFYQGYRCYRCR-APAHKECLG 390 (406)
T ss_dssp CCBCTTTC-CBCCSSSSCEEEETTTC-CEECGGGGG
T ss_pred CCCCcccc-chhceeCCCCCCCCCCc-Cccchhhhh
Confidence 47899998 66666 589999984 568999976
No 21
>2did_A Tripartite motif protein 39; ZF-B-box domian, Zn binding, one sequence two fold, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dif_A
Probab=21.64 E-value=73 Score=20.66 Aligned_cols=32 Identities=22% Similarity=0.383 Sum_probs=21.9
Q ss_pred eeeeeccCCCCeeecccccCcccCCCceeEEEee
Q psy7971 99 IRWKCAECSNYDLCSICYHAEKHNLRHRFYRINF 132 (276)
Q Consensus 99 ~RykC~~C~dfDLC~~C~~~~~H~~~H~f~ri~~ 132 (276)
..|=|..|... +|..|.....| ..|.+..+..
T Consensus 18 l~lfC~~d~~~-iC~~C~~~~~H-~~H~~~~l~e 49 (53)
T 2did_A 18 LSLFCYEDQEA-VCLICAISHTH-RAHTVVPLSG 49 (53)
T ss_dssp CCEEESSSCSE-ECHHHHTSSTT-TTSCEEECCC
T ss_pred eeEEeCCCCeE-EeccccCCCCC-CCCcEeeHHH
Confidence 45556666554 79999987777 4888766554
No 22
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=21.58 E-value=38 Score=24.87 Aligned_cols=32 Identities=28% Similarity=0.794 Sum_probs=24.0
Q ss_pred CCcCCCCCCCceeeeeeeeccCCCCeeeccccc
Q psy7971 85 GTMCDFCKQQPIYGIRWKCAECSNYDLCSICYH 117 (276)
Q Consensus 85 ~v~Cd~C~~~pI~G~RykC~~C~dfDLC~~C~~ 117 (276)
.+.|+.|...+..-.-..|+.|..+ ||..|..
T Consensus 3 e~~C~~C~~~~~~~av~~C~~C~~~-~C~~Cl~ 34 (101)
T 2jun_A 3 KVLCQFCDQDPAQDAVKTCVTCEVS-YCDECLK 34 (101)
T ss_dssp CCBCTTCCSSSCCBCCEEETTTTEE-ECHHHHH
T ss_pred CCCCcCCCCCCCCCceEECCcCChH-HhHHHCH
Confidence 4789999854334455679999764 9999986
No 23
>1qp2_A Protein (PSAE protein); mainly beta, roll, pleckstrin topology, SH3-like, electron T; NMR {Nostoc SP} SCOP: b.34.4.2 PDB: 1qp3_A
Probab=20.95 E-value=2.4e+02 Score=20.38 Aligned_cols=46 Identities=22% Similarity=0.382 Sum_probs=29.1
Q ss_pred eEEeCCCCccCCcCCCCCceeEEEeeCCCC---ceEEEEcCCCC-----cceeecCceeeeeec
Q psy7971 20 RVIRGPDWKWGKQDGGDGHVGTVRNFESPE---EVVVVWDNGTA-----ANYRCAGAFDLRILD 75 (276)
Q Consensus 20 RVvRGpdWkWg~qDgg~g~vGtVv~~ss~e---evvV~WD~G~~-----~~YR~~g~~DL~lvD 75 (276)
||.|-.++-++ .+|+|.+++..+ -+.|.|+.++- +||+. .+|..++
T Consensus 9 rIlr~eSywy~-------~vG~V~~Vd~~~~~ypV~VrFekvNy~g~~TnnFal---~ELe~v~ 62 (70)
T 1qp2_A 9 RILRPESYWFQ-------DVGTVASVDQSGIKYPVIVRFEKVNYSGINTNNFAE---DELVEVE 62 (70)
T ss_dssp EECCTTSTTTT-------CEEEEEEECCSSCSCSEEEECSSCCSSCCSEEEECG---GGEEECC
T ss_pred EEcCccceeec-------ceeEEEEEeCCCcEeeEEEEecccccccccccccCh---hHeeEec
Confidence 55666665443 478999998653 28888887652 34543 3555554
No 24
>2a7y_A Hypothetical protein RV2302/MT2359; anti-parallel beta sheet, structural genomics, PSI, protein structure initiative; NMR {Mycobacterium tuberculosis} SCOP: b.34.6.3
Probab=20.07 E-value=95 Score=23.29 Aligned_cols=37 Identities=19% Similarity=0.371 Sum_probs=24.6
Q ss_pred CCCcceEEEeCCCCcCCCCceeEEEe-cCCCceeeeeccCC
Q psy7971 175 NGRRGKVNEVQDWSAASPRSAAYIVW-DNGAKNLYRVGFEG 214 (276)
Q Consensus 175 ~g~~G~V~~~~~w~~~~~~~~v~V~W-d~g~~n~YR~G~~g 214 (276)
....|.|+|+++-+-. |. -.|+| |+|.....=-|.+-
T Consensus 22 ~~R~GeIvEV~g~dG~-PP--Y~VRw~ddGHe~lv~PGPDa 59 (83)
T 2a7y_A 22 HDQHAEIIEVRSADGS-PP--YVVRWLVNGHETTVYPGSDA 59 (83)
T ss_dssp CEEEEEEEECSCSSSC-SC--EEEEETTTTEEEEECCCSSC
T ss_pred CCcEEEEEEEECCCCC-CC--EEEEecCCCcEEEEecCCCe
Confidence 3467899999755321 22 57999 88987776555543
Done!