RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy7971
(276 letters)
>d2dk3a1 b.34.19.1 (A:8-80) E3 ubiquitin-protein ligase hectd1
{Human (Homo sapiens) [TaxId: 9606]}
Length = 73
Score = 100 bits (252), Expect = 3e-28
Identities = 28/70 (40%), Positives = 37/70 (52%), Gaps = 6/70 (8%)
Query: 151 VRGIFPGARVVRGVDWQWEDQDGGNGRRGKVNEVQDWSAASPRSAAYIVWDNGAKNLYRV 210
++ + PGARV+RG+DW+W DQDG G V + WD G N YR+
Sbjct: 6 LKYMVPGARVIRGLDWKWRDQDGSPQGEGTVTGE------LHNGWIDVTWDAGGSNSYRM 59
Query: 211 GFEGMADLKV 220
G EG DLK+
Sbjct: 60 GAEGKFDLKL 69
Score = 87.5 bits (217), Expect = 6e-23
Identities = 27/59 (45%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Query: 17 VGARVIRGPDWKWGKQDGGDGHVGTVRNFESPEEVVVVWDNGTAANYRCA--GAFDLRI 73
GARVIRG DWKW QDG GTV + V WD G + +YR G FDL++
Sbjct: 11 PGARVIRGLDWKWRDQDGSPQGEGTVTGELHNGWIDVTWDAGGSNSYRMGAEGKFDLKL 69
>d2dipa1 g.44.1.6 (A:8-92) Zinc finger ZZ-type-containing protein 2
{Human (Homo sapiens) [TaxId: 9606]}
Length = 85
Score = 76.2 bits (187), Expect = 2e-18
Identities = 25/64 (39%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Query: 80 GVKHDGTMCDFCKQQPIYGIRWKCAECSNYDLCSICYHAEKHNLRHRFYRINFPGSERVL 139
KH G C+ CKQ PI G +KC EC Y LC C+ + H L H F +
Sbjct: 19 LDKHLGIPCNNCKQFPIEGKCYKCTECIEYHLCQECFDSYCH-LSHTFTFREKRNQKWRS 77
Query: 140 LEPR 143
LE R
Sbjct: 78 LEKR 81
>d2fc7a1 g.44.1.6 (A:8-76) Zinc finger ZZ-type-containing protein 3,
ZZZ3 {Human (Homo sapiens) [TaxId: 9606]}
Length = 69
Score = 69.3 bits (169), Expect = 4e-16
Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 7/63 (11%)
Query: 76 SAPTGVKHDGTMCDFCKQQPIYGIRWKCAEC---SNYDLCSICY----HAEKHNLRHRFY 128
+ V+H G CD C +PI G+RW C +C + D C C + H H+
Sbjct: 5 AESGFVQHVGFKCDNCGIEPIQGVRWHCQDCPPEMSLDFCDSCSDCLHETDIHKEDHQLE 64
Query: 129 RIN 131
I
Sbjct: 65 PIY 67
>d1tota1 g.44.1.6 (A:1-52) CREB-binding protein, CBP {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 52
Score = 60.6 bits (147), Expect = 4e-13
Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 4/46 (8%)
Query: 88 CDFCKQQPIYGIRWKCAECSNYDLCSICYHAEKHNLRHRFYRINFP 133
C+ CK RW C C +YDLC CY+ + H H+ +
Sbjct: 9 CNECKHHV--ETRWHCTVCEDYDLCINCYNTKSHT--HKMVKWGLG 50
>d1wfla_ g.80.1.1 (A:) Zinc finger A20 domain containing protein 2
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 74
Score = 30.3 bits (68), Expect = 0.044
Identities = 11/49 (22%), Positives = 21/49 (42%), Gaps = 5/49 (10%)
Query: 75 DSAPTGVKHDGTMCDFCKQQ-PIYGIRWKCAECSNYDLCSICYHAEKHN 122
+ AP K C C+++ + G +C C + +++KHN
Sbjct: 15 EKAPELPKPKKNRCFMCRKKVGLTGFDCRC----GNLFCGLHRYSDKHN 59
>d1skza2 g.3.15.1 (A:59-110) Factor Xa inhibitor antistasin
{Mexican leech (Haementeria officinalis) [TaxId: 6410]}
Length = 52
Score = 26.9 bits (59), Expect = 0.48
Identities = 9/32 (28%), Positives = 17/32 (53%)
Query: 64 RCAGAFDLRILDSAPTGVKHDGTMCDFCKQQP 95
+C D+ + P G+K D C++C+ +P
Sbjct: 21 KCDCKIDINCRKTCPNGLKRDKLGCEYCECRP 52
>d1wffa_ g.80.1.1 (A:) ANUBL1 (AN1, ubiquitin-like, homolog) {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 85
Score = 26.7 bits (59), Expect = 0.89
Identities = 9/35 (25%), Positives = 15/35 (42%), Gaps = 2/35 (5%)
Query: 88 CDFCKQQPIYGIRWKCAECSNYDLCSICYHAEKHN 122
C C ++ ++C C N C+ +AE H
Sbjct: 28 CFLCGKKTGLATSFEC-RCGNN-FCASHRYAEAHG 60
>d1wfpa_ g.80.1.1 (A:) Zinc finger A20 and AN1 domains containing
protein At1g12440 {Thale cress (Arabidopsis thaliana)
[TaxId: 3702]}
Length = 74
Score = 26.4 bits (58), Expect = 0.90
Identities = 7/36 (19%), Positives = 13/36 (36%), Gaps = 5/36 (13%)
Query: 88 CDFCKQQ-PIYGIRWKCAECSNYDLCSICYHAEKHN 122
C C ++ + G + +C C + E H
Sbjct: 28 CLSCNKKVGVTGFKCRC----GSTFCGTHRYPESHE 59
>d1lu4a_ c.47.1.10 (A:) Soluble secreted antigen MPT53
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 134
Score = 26.5 bits (57), Expect = 2.1
Identities = 10/86 (11%), Positives = 18/86 (20%), Gaps = 2/86 (2%)
Query: 69 FDLRILDSAPTGVKHDGTMCDFCKQQPIYGIRWKCAECSNYDLCSICYHAEKHNLRHRFY 128
FD L P + C FC + + A + + F
Sbjct: 17 FDGASLQGKPAVLWFWTPWCPFCNAEAPSLSQVAAANPAVTFVGIATRADVGAM--QSFV 74
Query: 129 RINFPGSERVLLEPRRKSKKISVRGI 154
+ + +V
Sbjct: 75 SKYNLNFTNLNDADGVIWARYNVPWQ 100
>d1kqfb1 d.58.1.5 (B:2-245) Formate dehydrogenase N, iron-sulfur
(beta) subunit {Escherichia coli [TaxId: 562]}
Length = 244
Score = 26.0 bits (56), Expect = 4.7
Identities = 15/116 (12%), Positives = 29/116 (25%), Gaps = 10/116 (8%)
Query: 16 GVGARVIRGPDWKWGKQDGGDGHVGTVRNFESPEEVVVVWDNGTAANYRCAGAFDLRILD 75
+ V D +R E+ + + W C L+
Sbjct: 53 DIRDEVGHCVGVYDNPADLSAKSWTVMRFSETEQNGKLEWLIRKDGCMHCEDPGCLKACP 112
Query: 76 SAPTGVK----------HDGTMCDFCKQQPIYGIRWKCAECSNYDLCSICYHAEKH 121
SA ++ + C +C + I E + C++C
Sbjct: 113 SAGAIIQYANGIVDFQSENCIGCGYCIAGCPFNIPRLNKEDNRVYKCTLCVDRVSV 168
>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon
Pyrococcus furiosus [TaxId: 2261]}
Length = 237
Score = 25.8 bits (55), Expect = 5.6
Identities = 20/157 (12%), Positives = 41/157 (26%), Gaps = 9/157 (5%)
Query: 8 RANRFAMEGVGARVIRGPDWKWGKQDGGDGHVGTVRNFESPEEVVVVWDNGTAANYRC-- 65
AN + GV + D G+ + D T + V W++ A+ R
Sbjct: 43 MANLSLVLGVDDPDVTLHDVLAGEANVEDAIYMTQFDNVYVLPGAVDWEHVLKADPRKLP 102
Query: 66 ------AGAFDLRILDSAPTGVKHDGTMCDFCKQQPIYGIRWKCAECSNYDLCSICYHAE 119
FD ++D + ++ + + + A
Sbjct: 103 EVIKSLKDKFDFILIDCPAGLQLDAMSAMLSGEEALLVTNPEISCLTDTMKVGIVLKKAG 162
Query: 120 KHNLRHRFYRINFPGSERVLLEPRRKSKKISVRGIFP 156
L R + E ++ + + P
Sbjct: 163 LAILGFVLNRYGRS-DRDIPPEAAEDVMEVPLLAVIP 198
>d1vqsa_ d.58.4.13 (A:) Hypothetical protein Atu4242 {Agrobacterium
tumefaciens [TaxId: 358]}
Length = 110
Score = 24.8 bits (54), Expect = 5.9
Identities = 7/34 (20%), Positives = 12/34 (35%)
Query: 166 WQWEDQDGGNGRRGKVNEVQDWSAASPRSAAYIV 199
W + D RR ++ W + P+ I
Sbjct: 61 WAFSSLDDRAERRARLMADPRWLSFLPKIRDLIE 94
>d1vqya1 d.58.4.13 (A:1-104) Hypothetical protein Atu5224
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 104
Score = 24.5 bits (53), Expect = 7.0
Identities = 13/34 (38%), Positives = 16/34 (47%)
Query: 166 WQWEDQDGGNGRRGKVNEVQDWSAASPRSAAYIV 199
W + D RRGK+ E Q W A PR + I
Sbjct: 55 WGYASLDDRAERRGKLAEDQRWQAFIPRLSVLIE 88
>d1b9ha_ c.67.1.4 (A:) 3-amino-5-hydroxybenzoic acid synthase (AHBA
synthase) {Amycolatopsis mediterranei [TaxId: 33910]}
Length = 384
Score = 25.1 bits (53), Expect = 9.8
Identities = 5/82 (6%), Positives = 13/82 (15%)
Query: 52 VVVWDNGTAANYRCAGAFDLRILDSAPTGVKHDGTMCDFCKQQPIYGIRWKCAECSNYDL 111
+ NGT A + + ++ + +
Sbjct: 52 ALAVTNGTHALELALQVMGVGPGTEVIVPAFTFISSSQAAQRLGAVTVPVDVDAATYNLD 111
Query: 112 CSICYHAEKHNLRHRFYRINFP 133
A +
Sbjct: 112 PEAVAAAVTPRTKVIMPVHMAG 133
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.137 0.444
Gapped
Lambda K H
0.267 0.0571 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,131,402
Number of extensions: 55711
Number of successful extensions: 131
Number of sequences better than 10.0: 1
Number of HSP's gapped: 128
Number of HSP's successfully gapped: 23
Length of query: 276
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 192
Effective length of database: 1,254,276
Effective search space: 240820992
Effective search space used: 240820992
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.2 bits)