Query psy7972
Match_columns 303
No_of_seqs 333 out of 1394
Neff 6.0
Searched_HMMs 46136
Date Fri Aug 16 23:32:42 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7972.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7972hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd04704 PLA2_bee_venom_like PL 100.0 8E-45 1.7E-49 290.9 5.3 97 66-165 1-97 (97)
2 PF05826 Phospholip_A2_2: Phos 100.0 2E-45 4.4E-50 295.6 1.3 99 67-168 1-99 (99)
3 cd04705 PLA2_group_III_like PL 99.9 1.6E-26 3.5E-31 185.3 5.4 76 82-163 24-99 (100)
4 cd00618 PLA2_like PLA2_like: P 99.7 8.6E-18 1.9E-22 130.3 3.7 69 68-138 1-82 (83)
5 PHA02713 hypothetical protein; 99.6 1.6E-15 3.6E-20 154.6 4.2 104 185-293 5-118 (557)
6 KOG4441|consensus 99.5 2.9E-15 6.3E-20 153.3 4.0 108 181-293 12-129 (571)
7 smart00085 PA2c Phospholipase 99.3 1.6E-13 3.6E-18 113.7 -0.0 87 64-166 16-102 (117)
8 PHA02790 Kelch-like protein; P 99.3 2.7E-12 5.8E-17 128.7 3.4 93 194-293 11-115 (480)
9 PF00651 BTB: BTB/POZ domain; 99.2 3.3E-11 7.2E-16 95.8 5.4 75 196-289 1-79 (111)
10 KOG4350|consensus 99.1 1.9E-11 4.1E-16 118.8 3.4 74 189-267 28-103 (620)
11 PHA03098 kelch-like protein; P 99.0 1.2E-10 2.7E-15 117.2 3.4 59 202-267 6-66 (534)
12 cd04706 PLA2_plant PLA2_plant: 99.0 2.2E-10 4.8E-15 94.6 3.5 57 70-141 24-80 (117)
13 smart00225 BTB Broad-Complex, 98.8 1.2E-08 2.7E-13 76.2 6.0 55 207-266 1-57 (90)
14 KOG2075|consensus 98.5 1.6E-07 3.6E-12 93.1 5.7 80 183-267 92-178 (521)
15 cd00125 PLA2c PLA2c: Phospholi 98.3 2.1E-07 4.5E-12 77.1 1.9 63 71-139 24-101 (115)
16 cd04707 otoconin_90 otoconin_9 98.2 6.6E-07 1.4E-11 74.3 1.5 63 71-139 21-98 (117)
17 KOG4591|consensus 98.0 3.9E-06 8.5E-11 75.7 3.0 81 186-287 47-131 (280)
18 KOG4087|consensus 98.0 1.9E-06 4.1E-11 73.1 0.8 68 65-138 38-121 (144)
19 PF00068 Phospholip_A2_1: Phos 97.6 1.6E-05 3.4E-10 65.8 -0.3 62 72-139 26-101 (116)
20 KOG0783|consensus 97.5 0.00011 2.5E-09 77.3 4.6 75 192-266 541-628 (1267)
21 PF05826 Phospholip_A2_2: Phos 97.4 5.6E-05 1.2E-09 61.1 0.9 42 252-296 58-99 (99)
22 cd04704 PLA2_bee_venom_like PL 96.6 0.0013 2.8E-08 52.9 2.2 39 252-293 59-97 (97)
23 KOG4682|consensus 96.3 0.0035 7.5E-08 61.9 3.9 52 196-248 60-113 (488)
24 KOG0783|consensus 96.2 0.0016 3.5E-08 69.0 0.7 46 204-251 709-757 (1267)
25 KOG2838|consensus 96.0 0.0048 1E-07 58.4 2.9 77 190-267 115-191 (401)
26 PF08398 Parvo_coat_N: Parvovi 95.6 0.0041 9E-08 46.3 0.6 39 68-109 1-40 (64)
27 KOG2838|consensus 93.2 0.049 1.1E-06 51.7 1.9 47 191-237 221-283 (401)
28 PF03931 Skp1_POZ: Skp1 family 88.2 1.7 3.7E-05 31.6 5.7 44 208-252 3-47 (62)
29 PF06951 PLA2G12: Group XII se 86.7 0.41 9E-06 42.9 2.0 58 65-139 73-130 (184)
30 KOG0511|consensus 78.4 0.7 1.5E-05 45.9 0.1 58 205-267 149-207 (516)
31 PF02214 BTB_2: BTB/POZ domain 77.6 5 0.00011 31.0 4.8 55 208-268 1-61 (94)
32 cd04705 PLA2_group_III_like PL 74.2 2.2 4.7E-05 34.7 1.9 18 252-269 66-83 (100)
33 KOG3473|consensus 72.0 7.3 0.00016 31.7 4.4 45 208-253 19-68 (112)
34 smart00512 Skp1 Found in Skp1 58.9 13 0.00029 29.4 3.7 54 208-267 4-61 (104)
35 KOG3863|consensus 56.2 2.5 5.4E-05 44.2 -1.3 41 193-238 2-42 (604)
36 KOG1987|consensus 52.3 5.7 0.00012 37.0 0.6 39 214-252 109-149 (297)
37 COG3651 Uncharacterized protei 47.0 9.5 0.0002 31.3 1.0 26 50-75 59-84 (125)
38 PF08036 Antimicrobial_6: Diap 41.0 9.3 0.0002 25.6 0.1 12 90-101 15-26 (39)
39 KOG2716|consensus 39.6 47 0.001 30.9 4.5 55 208-268 7-65 (230)
40 KOG0511|consensus 29.8 16 0.00035 36.6 -0.3 42 196-237 168-210 (516)
No 1
>cd04704 PLA2_bee_venom_like PLA2_bee_venom_like: A sub-family of Phospholipase A2, similar to bee venom PLA2. PLA2 is a super-family of secretory and cytosolic enzymes; the latter are either Ca dependent or Ca independent. Enzymatically active PLA2 cleaves the sn-2 position of the glycerol backbone of phospholipids; secreted PLA2s have also been found to specifically bind to a variety of soluble and membrane proteins in mammals, including receptors. As a toxin, PLA2 is a potent presynaptic neurotoxin which blocks nerve terminals by binding to the nerve membrane and hydrolyzing stable membrane lipids. The products of the hydrolysis cannot form bilayers leading to a change in membrane conformation and ultimately to a block in the release of neurotransmitters. PLA2 may form dimers or oligomers. Bee venom PLA2 has fewer conserved disulfide bridges than most canonical PLA2s.
Probab=100.00 E-value=8e-45 Score=290.91 Aligned_cols=97 Identities=55% Similarity=1.091 Sum_probs=93.8
Q ss_pred eeeCCCcccCCCCCCCCCCCCCCcchhhhhcccccCCcccccccCccCCcccCCccccccccchhHHHHHhhhhcCCCCc
Q psy7972 66 LIFPGTKWCGAGDIATDYNDLGTNVETDKCCRDHDHCSEYILAKSSLHGLRNNAPFTRVHCRCDKKFYDCLKTAADTGDQ 145 (303)
Q Consensus 66 ~~~pGT~WCG~g~~a~~~~~lG~~~~tD~CCr~HD~C~~~I~~~~~k~gl~N~~~~t~shC~CD~~f~~CL~~~~~~~~~ 145 (303)
+|+|||||||+||+|.+|+|||.+.+||+|||+||+||++|++++++||++|.+|||++||+||++|++||+++++ .
T Consensus 1 ~~~pGTkWCG~Gn~a~~~~dlG~~~~tD~CCr~HD~C~~~i~~~~~kyg~~N~~~~t~~~C~CD~~f~~CL~~~~~---~ 77 (97)
T cd04704 1 FIVPGTKWCGPGNIATNYSDLGAFRETDKCCREHDHCPDIISAGEYKYGLTNTRLFTRSHCDCDNRFRQCLKNVND---S 77 (97)
T ss_pred CccCCCeecCCCCCCCCcccccCccccchHHHccccCcCcccccccccCccCCCccccccCcHHHHHHHHHHHcCC---H
Confidence 6899999999999999999999999999999999999999999999999999999999999999999999999964 5
Q ss_pred hhhhhhhhhhcccccccccc
Q psy7972 146 PSQMVGYMYFNLLETQCFQE 165 (303)
Q Consensus 146 ~s~~vG~~yFnv~~~~Cf~~ 165 (303)
+|+.||++||||++++||++
T Consensus 78 ~s~~vG~~yFnv~~~~Cf~~ 97 (97)
T cd04704 78 TSNQVGKIYFNVLQVPCFEL 97 (97)
T ss_pred HHHHHHHHhhcccCCCccCC
Confidence 89999999999999999974
No 2
>PF05826 Phospholip_A2_2: Phospholipase A2; InterPro: IPR001211 Phospholipase A2 (3.1.1.4 from EC) (PLA2) is a small lipolytic enzyme that releases fatty acids from the second carbon group of glycerol. It is involved in a number of physiologically important cellular processes, such as the liberation of arachidonic acid from membrane phospholipids []. It plays a pivotal role in the biosynthesis of prostaglandin and other mediators of inflammation. PLA2 has four to seven disulphide bonds and binds a calcium ion that is essential for activity. Within the active enzyme, the alpha amino group is involved in a conserved hydrogen-bonding network linking the N-terminal region to the active site. The side chains of two conserved residues, His and Asp, participate in the catalytic network. Many PLA2's are widely distributed in snakes, lizards, bees and mammals. In mammals there are at least four forms: pancreatic, membrane-associated as well as two less well characterised forms. The venom of most snakes contains multiple forms of PLA2. Some of them are presynaptic neurotoxins which inhibit neuromuscular transmission by blocking acetylcholine release from the nerve termini. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Api m 1.; GO: 0004623 phospholipase A2 activity, 0005509 calcium ion binding, 0016042 lipid catabolic process; PDB: 1POC_A.
Probab=100.00 E-value=2e-45 Score=295.62 Aligned_cols=99 Identities=49% Similarity=1.075 Sum_probs=77.3
Q ss_pred eeCCCcccCCCCCCCCCCCCCCcchhhhhcccccCCcccccccCccCCcccCCccccccccchhHHHHHhhhhcCCCCch
Q psy7972 67 IFPGTKWCGAGDIATDYNDLGTNVETDKCCRDHDHCSEYILAKSSLHGLRNNAPFTRVHCRCDKKFYDCLKTAADTGDQP 146 (303)
Q Consensus 67 ~~pGT~WCG~g~~a~~~~~lG~~~~tD~CCr~HD~C~~~I~~~~~k~gl~N~~~~t~shC~CD~~f~~CL~~~~~~~~~~ 146 (303)
|+|||||||+||+|.+|+|||.+.+||+|||+||+||++|+++++||||+|.++||++||+||.+|++||++++ +.+
T Consensus 1 i~pGT~WCG~gn~a~~~~dlG~~~~tD~CCR~HD~C~~~I~~~~~k~gl~N~~~~T~~hC~Cd~~f~~CL~~~~---~~~ 77 (99)
T PF05826_consen 1 IYPGTKWCGPGNIAKNYSDLGEFKETDRCCREHDHCPDKIPPGETKYGLHNPRPFTISHCDCDSRFYQCLKNVN---TST 77 (99)
T ss_dssp B-TT-SSSBSS---SSTT---SSHHHHHHHHHHHT-SSEE-TT-EETTEE--SSS-EEBHHHHHHHHHHHHTS----HHH
T ss_pred CCCCCcccCCCCCccCcccccccHHHHHHHHhhccCCCccCCCccccccccCCcCceeecCcccHHHHHHHHcC---Cch
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999985 458
Q ss_pred hhhhhhhhhccccccccccccc
Q psy7972 147 SQMVGYMYFNLLETQCFQESAD 168 (303)
Q Consensus 147 s~~vG~~yFnv~~~~Cf~~~~~ 168 (303)
|+.||.+||||++++||++.+|
T Consensus 78 a~~Vg~~yF~v~~~~Cf~~~~p 99 (99)
T PF05826_consen 78 ANEVGNIYFNVLQPPCFELEYP 99 (99)
T ss_dssp HHHHHHHHHHTS---EEEEES-
T ss_pred HHHHHHHHHhccCCCeeCccCC
Confidence 9999999999999999998753
No 3
>cd04705 PLA2_group_III_like PLA2_group_III_like: A sub-family of Phospholipase A2, similar to human group III PLA2. PLA2 is a super-family of secretory and cytosolic enzymes; the latter are either Ca dependent or Ca independent. Enzymatically active PLA2 cleaves the sn-2 position of the glycerol backbone of phospholipids; secreted PLA2s have also been found to specifically bind to a variety of soluble and membrane proteins in mammals, including receptors. As a toxin, PLA2 is a potent presynaptic neurotoxin which blocks nerve terminals by binding to the nerve membrane and hydrolyzing stable membrane lipids. The products of the hydrolysis cannot form bilayers leading to a change in membrane conformation and ultimately to a block in the release of neurotransmitters. PLA2 may form dimers or oligomers.
Probab=99.93 E-value=1.6e-26 Score=185.34 Aligned_cols=76 Identities=33% Similarity=0.658 Sum_probs=66.1
Q ss_pred CCCCCCCcchhhhhcccccCCcccccccCccCCcccCCccccccccchhHHHHHhhhhcCCCCchhhhhhhhhhcccccc
Q psy7972 82 DYNDLGTNVETDKCCRDHDHCSEYILAKSSLHGLRNNAPFTRVHCRCDKKFYDCLKTAADTGDQPSQMVGYMYFNLLETQ 161 (303)
Q Consensus 82 ~~~~lG~~~~tD~CCr~HD~C~~~I~~~~~k~gl~N~~~~t~shC~CD~~f~~CL~~~~~~~~~~s~~vG~~yFnv~~~~ 161 (303)
..++||.+++||+|||+||+||++|.+++++|||+|.++||++||+||.+|++||+++|+. + ||.++++++++.
T Consensus 24 ~~~~lG~~~~~DrCCR~HD~Cp~~I~~~~~k~gl~N~~~~tisHCdCD~rf~~CL~~~n~~----~--~~~~~s~~lG~~ 97 (100)
T cd04705 24 PFLSEGEFKEPDRCCWKHKQCPGHIIPPFSSDGHHNFHLHSVSHCDCDSRLKDCLRLSSSS----R--VGPTCSHLLGTT 97 (100)
T ss_pred cccccccccchhhhhhhhhcCccccCCcccccceecCCCcccccccHHHHHHHHHHHcCCc----c--ccccHHHHhccc
Confidence 4478999999999999999999999999999999999999999999999999999999752 1 555555555555
Q ss_pred cc
Q psy7972 162 CF 163 (303)
Q Consensus 162 Cf 163 (303)
||
T Consensus 98 ~F 99 (100)
T cd04705 98 CF 99 (100)
T ss_pred cc
Confidence 55
No 4
>cd00618 PLA2_like PLA2_like: Phospholipase A2, a super-family of secretory and cytosolic enzymes; the latter are either Ca dependent or Ca independent. PLA2 cleaves the sn-2 position of the glycerol backbone of phospholipids (PC or phosphatidylethanolamine), usually in a metal-dependent reaction, to generate lysophospholipid (LysoPL) and a free fatty acid (FA). The resulting products are either dietary or used in synthetic pathways for leukotrienes and prostaglandins. Often, arachidonic acid is released as a free fatty acid and acts as second messenger in signaling networks. Secreted PLA2s have also been found to specifically bind to a variety of soluble and membrane proteins in mammals, including receptors. As a toxin, PLA2 is a potent presynaptic neurotoxin which blocks nerve terminals by binding to the nerve membrane and hydrolyzing stable membrane lipids. The products of the hydrolysis (LysoPL and FA) cannot form bilayers leading to a change in membrane conformation and ultimately
Probab=99.70 E-value=8.6e-18 Score=130.27 Aligned_cols=69 Identities=38% Similarity=0.727 Sum_probs=64.2
Q ss_pred eCCCcccCCCCCCCCCCCCCCcchhhhhcccccCCcccccccCccCC-------------cccCCccccccccchhHHHH
Q psy7972 68 FPGTKWCGAGDIATDYNDLGTNVETDKCCRDHDHCSEYILAKSSLHG-------------LRNNAPFTRVHCRCDKKFYD 134 (303)
Q Consensus 68 ~pGT~WCG~g~~a~~~~~lG~~~~tD~CCr~HD~C~~~I~~~~~k~g-------------l~N~~~~t~shC~CD~~f~~ 134 (303)
.|+++|||+|+.+.++..++ .+||+|||.||+|++.|...+.+++ +.|..+.+++||+||++|..
T Consensus 1 ~~ygc~CG~g~~~~~~g~p~--D~~D~CC~~HD~Cy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~C~CD~~~a~ 78 (83)
T cd00618 1 LPYGCYCGPGGSACPSGQPV--DETDRCCRKHDCCYDQISDGGCCDGCLSYSFSEGGVTCLTNSDLCTRSHCDCDRRLAI 78 (83)
T ss_pred CCcCcccCCCCcCCCCCCCC--CcchhhhhhCccHhhhhhccCCCCCcceeeecCCceeECCCCChhhHhhCcccHHHHH
Confidence 47899999999998888777 6999999999999999999999988 78999999999999999999
Q ss_pred Hhhh
Q psy7972 135 CLKT 138 (303)
Q Consensus 135 CL~~ 138 (303)
||++
T Consensus 79 Cl~~ 82 (83)
T cd00618 79 CLAR 82 (83)
T ss_pred Hhhh
Confidence 9986
No 5
>PHA02713 hypothetical protein; Provisional
Probab=99.56 E-value=1.6e-15 Score=154.58 Aligned_cols=104 Identities=22% Similarity=0.301 Sum_probs=85.0
Q ss_pred ccccccchhhhHHHHhccCCcccEEEEec-CeEEecchhhhhccCchhhhhhcCC--CC-CCCEEEecCcccccccchHH
Q psy7972 185 WKYHHSNLQSMFSQLLERECFCDVTLACE-GKHIRAHKVMLSACSTYFDAILSQH--DE-TNPIVVFKDVRVHCRCDKKF 260 (303)
Q Consensus 185 ws~h~~~ll~~L~~lr~~~~l~DVtl~v~-g~~f~AHK~VLAa~S~yFramF~~~--e~-~~~~I~L~~vs~~ClcD~~f 260 (303)
...|+..+++.|++||+++.+|||+|.|+ |++|+|||+||||+|+||++||+++ |. .+.+|+|+++++ .++
T Consensus 5 ~~~h~~~~l~~l~~lr~~~~l~DV~L~v~~~~~f~~Hr~vLaa~S~YF~amF~~~~~e~~~~~~v~l~~v~~-----~~~ 79 (557)
T PHA02713 5 DIKHNRRVVSNISNLLDDDILCDVIITIGDGEEIKAHKTILAAGSKYFRTLFTTPMIIRDLVTRVNLQMFDK-----DAV 79 (557)
T ss_pred hhhhhHHHHHHHHHHHhCCCCCCEEEEeCCCCEEeehHHHHhhcCHHHHHHhcCCchhhccCceEEeccCCH-----HHH
Confidence 45788999999999999999999999997 8999999999999999999999987 44 478999999998 677
Q ss_pred HHHHhhh------hccCCChHHHHhhhcccccccccccc
Q psy7972 261 YDCLKTA------ADTGDQPSQMVGYMYFNLLETQCFQE 293 (303)
Q Consensus 261 ~~~L~~a------~d~i~~~~~~v~~lY~~~l~~~Cf~~ 293 (303)
+.+|+|+ .+|++.+..++.++....|...|.++
T Consensus 80 ~~ll~y~Yt~~i~~~nv~~ll~aA~~lqi~~l~~~C~~~ 118 (557)
T PHA02713 80 KNIVQYLYNRHISSMNVIDVLKCADYLLIDDLVTDCESY 118 (557)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHH
Confidence 7777776 45555555666666666666656543
No 6
>KOG4441|consensus
Probab=99.54 E-value=2.9e-15 Score=153.27 Aligned_cols=108 Identities=22% Similarity=0.316 Sum_probs=89.2
Q ss_pred hhccccccccchhhhHHHHhccCCcccEEEEecCeEEecchhhhhccCchhhhhhcCC--CCCCCEEEecCcccccccch
Q psy7972 181 YCLRWKYHHSNLQSMFSQLLERECFCDVTLACEGKHIRAHKVMLSACSTYFDAILSQH--DETNPIVVFKDVRVHCRCDK 258 (303)
Q Consensus 181 ~cLrws~h~~~ll~~L~~lr~~~~l~DVtl~v~g~~f~AHK~VLAa~S~yFramF~~~--e~~~~~I~L~~vs~~ClcD~ 258 (303)
.-+....|...+++.|+.+|+++.||||+|.+++++|+|||+||||+||||++||++. |+.+.+|+|+++++ .
T Consensus 12 ~~~~~~~h~~~~l~~l~~lr~~~~lcDv~L~v~~~~~~aHR~VLAa~S~YFraMFt~~l~e~~~~~i~l~~v~~-----~ 86 (571)
T KOG4441|consen 12 SEFTDPSHSKFLLQGLNELREEGLLCDVTLLVGDREFPAHRVVLAACSPYFRAMFTSGLKESKQKEINLEGVDP-----E 86 (571)
T ss_pred cccccHHHHHHHHHHHHHHHHhCCCceEEEEECCeeechHHHHHHhccHHHHHHhcCCcccccceEEEEecCCH-----H
Confidence 3467889999999999999999999999999999999999999999999999999987 88999999999998 5
Q ss_pred HHHHHHhhh--------hccCCChHHHHhhhcccccccccccc
Q psy7972 259 KFYDCLKTA--------ADTGDQPSQMVGYMYFNLLETQCFQE 293 (303)
Q Consensus 259 ~f~~~L~~a--------~d~i~~~~~~v~~lY~~~l~~~Cf~~ 293 (303)
.+..+|.|+ .+|++.+...+.++-...+.+.|.++
T Consensus 87 ~l~~ll~y~Yt~~i~i~~~nVq~ll~aA~~lQi~~v~~~C~~f 129 (571)
T KOG4441|consen 87 TLELLLDYAYTGKLEISEDNVQELLEAASLLQIPEVVDACCEF 129 (571)
T ss_pred HHHHHHHHhhcceEEechHhHHHHHHHHHHhhhHHHHHHHHHH
Confidence 666666665 45555555555566656666666543
No 7
>smart00085 PA2c Phospholipase A2.
Probab=99.33 E-value=1.6e-13 Score=113.66 Aligned_cols=87 Identities=21% Similarity=0.272 Sum_probs=73.0
Q ss_pred cceeeCCCcccCCCCCCCCCCCCCCcchhhhhcccccCCcccccccCccCCcccCCccccccccchhHHHHHhhhhcCCC
Q psy7972 64 SDLIFPGTKWCGAGDIATDYNDLGTNVETDKCCRDHDHCSEYILAKSSLHGLRNNAPFTRVHCRCDKKFYDCLKTAADTG 143 (303)
Q Consensus 64 ~~~~~pGT~WCG~g~~a~~~~~lG~~~~tD~CCr~HD~C~~~I~~~~~k~gl~N~~~~t~shC~CD~~f~~CL~~~~~~~ 143 (303)
+.++.|||.||+-|+.+...+ ..+||+||++||+|++.|++ +.-++ .+++++|+||.++..|+...
T Consensus 16 ~~~~~y~~YGCyCG~gg~G~p----vD~~D~CC~~HD~Cy~~~~~-~~C~~-----~~~~y~~~c~~~~~~C~~~~---- 81 (117)
T smart00085 16 RAWLSYGDYGCYCGWGGSGTP----VDATDRCCFVHDCCYGKAEK-EGCNP-----KTTTYSYSCDNGFITCGGKN---- 81 (117)
T ss_pred CcccchhccCcccCCCCCCCc----cccccchhhhcCchhhhccc-CCCcc-----cccceEEEEECCcceECcCC----
Confidence 468999999999988876554 56999999999999999987 44432 67999999999999999652
Q ss_pred Cchhhhhhhhhhccccccccccc
Q psy7972 144 DQPSQMVGYMYFNLLETQCFQES 166 (303)
Q Consensus 144 ~~~s~~vG~~yFnv~~~~Cf~~~ 166 (303)
.+-.++..+||.....||+..
T Consensus 82 --~~C~~~~C~CD~~aa~Cf~~~ 102 (117)
T smart00085 82 --TACLVFVCECDRAAAICFAKN 102 (117)
T ss_pred --CccceeecccCHHHHHHhhhC
Confidence 256799999999999999974
No 8
>PHA02790 Kelch-like protein; Provisional
Probab=99.25 E-value=2.7e-12 Score=128.75 Aligned_cols=93 Identities=14% Similarity=0.107 Sum_probs=68.6
Q ss_pred hhHHHHhccCCcccEEEEecCeEEecchhhhhccCchhhhhhcCC--CCCCCEEEe--cCcccccccchHHHHHHhhh--
Q psy7972 194 SMFSQLLERECFCDVTLACEGKHIRAHKVMLSACSTYFDAILSQH--DETNPIVVF--KDVRVHCRCDKKFYDCLKTA-- 267 (303)
Q Consensus 194 ~~L~~lr~~~~l~DVtl~v~g~~f~AHK~VLAa~S~yFramF~~~--e~~~~~I~L--~~vs~~ClcD~~f~~~L~~a-- 267 (303)
+.+-+||..+.+|||++++| ++|+|||+||||+|||||+||+++ |+. .+|.+ .++++ ..++.+|.|+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~-~~~~~HR~VLAa~S~YFraMF~~~~~Es~-~~v~~~~~~v~~-----~~l~~lldy~YT 83 (480)
T PHA02790 11 KNILALSMTKKFKTIIEAIG-GNIIVNSTILKKLSPYFRTHLRQKYTKNK-DPVTRVCLDLDI-----HSLTSIVIYSYT 83 (480)
T ss_pred hhHHHHHhhhhhceEEEEcC-cEEeeehhhhhhcCHHHHHHhcCCccccc-cceEEEecCcCH-----HHHHHHHHhhee
Confidence 34567899999999887764 699999999999999999999987 554 34555 48887 5667777666
Q ss_pred ------hccCCChHHHHhhhcccccccccccc
Q psy7972 268 ------ADTGDQPSQMVGYMYFNLLETQCFQE 293 (303)
Q Consensus 268 ------~d~i~~~~~~v~~lY~~~l~~~Cf~~ 293 (303)
.+|++.+.+++.++-...+...|.++
T Consensus 84 g~l~it~~nV~~ll~aA~~Lqi~~v~~~C~~f 115 (480)
T PHA02790 84 GKVYIDSHNVVNLLRASILTSVEFIIYTCINF 115 (480)
T ss_pred eeEEEecccHHHHHHHHHHhChHHHHHHHHHH
Confidence 55666666666666666666666443
No 9
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=99.17 E-value=3.3e-11 Score=95.76 Aligned_cols=75 Identities=29% Similarity=0.501 Sum_probs=57.3
Q ss_pred HHHHhccCCcccEEEEec-CeEEecchhhhhccCchhhhhhcCC-CCCC--CEEEecCcccccccchHHHHHHhhhhccC
Q psy7972 196 FSQLLERECFCDVTLACE-GKHIRAHKVMLSACSTYFDAILSQH-DETN--PIVVFKDVRVHCRCDKKFYDCLKTAADTG 271 (303)
Q Consensus 196 L~~lr~~~~l~DVtl~v~-g~~f~AHK~VLAa~S~yFramF~~~-e~~~--~~I~L~~vs~~ClcD~~f~~~L~~a~d~i 271 (303)
|+++++++.++|++|.++ ++.|+|||.||+++|+||+.||.+. .... .+|.++++++ ..|..
T Consensus 1 ~~~~~~~~~~~D~~i~v~d~~~~~vhk~iL~~~S~~F~~~~~~~~~~~~~~~~i~~~~~~~-----~~~~~--------- 66 (111)
T PF00651_consen 1 LNDLFNSNEFSDVTIRVGDGKTFYVHKNILAARSPYFRNLFEGSKFKESTVPEISLPDVSP-----EAFEA--------- 66 (111)
T ss_dssp HHHHHHHTTS--EEEEETTTEEEEE-HHHHHHHBHHHHHHHTTTTSTTSSEEEEEETTSCH-----HHHHH---------
T ss_pred ChHHHcCCCCCCEEEEECCCEEEeechhhhhccchhhhhcccccccccccccccccccccc-----ccccc---------
Confidence 578999999999999999 8999999999999999999999987 2333 4788899998 34444
Q ss_pred CChHHHHhhhcccccccc
Q psy7972 272 DQPSQMVGYMYFNLLETQ 289 (303)
Q Consensus 272 ~~~~~~v~~lY~~~l~~~ 289 (303)
++.+||.+.+..+
T Consensus 67 -----~l~~~Y~~~~~~~ 79 (111)
T PF00651_consen 67 -----FLEYMYTGEIEIN 79 (111)
T ss_dssp -----HHHHHHHSEEEEE
T ss_pred -----ccccccCCcccCC
Confidence 4555677665543
No 10
>KOG4350|consensus
Probab=99.14 E-value=1.9e-11 Score=118.79 Aligned_cols=74 Identities=27% Similarity=0.494 Sum_probs=66.7
Q ss_pred ccchhhhHHHHhccCCcccEEEEecCeEEecchhhhhccCchhhhhhcCC--CCCCCEEEecCcccccccchHHHHHHhh
Q psy7972 189 HSNLQSMFSQLLERECFCDVTLACEGKHIRAHKVMLSACSTYFDAILSQH--DETNPIVVFKDVRVHCRCDKKFYDCLKT 266 (303)
Q Consensus 189 ~~~ll~~L~~lr~~~~l~DVtl~v~g~~f~AHK~VLAa~S~yFramF~~~--e~~~~~I~L~~vs~~ClcD~~f~~~L~~ 266 (303)
+.++.+.+.++..+..+.||+++|++..|+|||+||||+|.|||+|+.++ |+.+..|.|++-++ ++|+.+|++
T Consensus 28 ~~~fS~~~~~l~~~e~y~DVtfvve~~rfpAHRvILAaRs~yFRAlLYgGm~Es~q~~ipLq~t~~-----eAF~~lLrY 102 (620)
T KOG4350|consen 28 SNNFSQSFDELFTSEDYSDVTFVVEDTRFPAHRVILAARSSYFRALLYGGMQESHQQLIPLQETNS-----EAFRALLRY 102 (620)
T ss_pred ccchhHHHHHHhhcCcccceEEEEeccccchhhhhHHHHHHHHHHHHhhhhhhhhhcccccccccH-----HHHHHHHHH
Confidence 45567889999999999999999999999999999999999999999987 88889999998887 688888877
Q ss_pred h
Q psy7972 267 A 267 (303)
Q Consensus 267 a 267 (303)
.
T Consensus 103 i 103 (620)
T KOG4350|consen 103 I 103 (620)
T ss_pred H
Confidence 4
No 11
>PHA03098 kelch-like protein; Provisional
Probab=99.02 E-value=1.2e-10 Score=117.20 Aligned_cols=59 Identities=24% Similarity=0.453 Sum_probs=50.4
Q ss_pred cCCcccEEEEe--cCeEEecchhhhhccCchhhhhhcCCCCCCCEEEecCcccccccchHHHHHHhhh
Q psy7972 202 RECFCDVTLAC--EGKHIRAHKVMLSACSTYFDAILSQHDETNPIVVFKDVRVHCRCDKKFYDCLKTA 267 (303)
Q Consensus 202 ~~~l~DVtl~v--~g~~f~AHK~VLAa~S~yFramF~~~e~~~~~I~L~~vs~~ClcD~~f~~~L~~a 267 (303)
++.+|||+|.+ +|++|+|||+|||++|+||++||.+... +.+|+|++ ++ ..|+.+|+++
T Consensus 6 ~~~~~Dv~l~~~~~~~~~~~Hk~vLaa~S~yF~~mf~~~~~-~~~i~l~~-~~-----~~~~~~l~y~ 66 (534)
T PHA03098 6 LQKFCDESIIIVNGGGIIKVHKIILSSSSEYFKKMFKNNFK-ENEINLNI-DY-----DSFNEVIKYI 66 (534)
T ss_pred cCCCCCEEEEEEcCCEEEEeHHHHHHhhhHHHHHHHhCCCC-CceEEecC-CH-----HHHHHHHHHh
Confidence 78999999998 9999999999999999999999988643 68899999 76 4666666554
No 12
>cd04706 PLA2_plant PLA2_plant: Plant-specific sub-family of Phospholipase A2, a super-family of secretory and cytosolic enzymes; the latter are either Ca dependent or Ca independent. Enzymatically active PLA2 cleaves the sn-2 position of the glycerol backbone of phospholipids; secreted PLA2s have also been found to specifically bind to a variety of soluble and membrane proteins in mammals, including receptors. As a toxin, PLA2 is a potent presynaptic neurotoxin which blocks nerve terminals by binding to the nerve membrane and hydrolyzing stable membrane lipids. The products of the hydrolysis cannot form bilayers leading to a change in membrane conformation and ultimately to a block in the release of neurotransmitters. PLA2 may form dimers or oligomers. This sub-family does not appear to have a conserved active site and metal-binding loop.
Probab=99.00 E-value=2.2e-10 Score=94.61 Aligned_cols=57 Identities=25% Similarity=0.539 Sum_probs=45.4
Q ss_pred CCcccCCCCCCCCCCCCCCcchhhhhcccccCCcccccccCccCCcccCCccccccccchhHHHHHhhhhcC
Q psy7972 70 GTKWCGAGDIATDYNDLGTNVETDKCCRDHDHCSEYILAKSSLHGLRNNAPFTRVHCRCDKKFYDCLKTAAD 141 (303)
Q Consensus 70 GT~WCG~g~~a~~~~~lG~~~~tD~CCr~HD~C~~~I~~~~~k~gl~N~~~~t~shC~CD~~f~~CL~~~~~ 141 (303)
-.+|||+|+.+.. ++.--.++|+||+.||+|++.. ...+.+|+||.+|++||.++.+
T Consensus 24 YG~yCG~g~~g~~--~~~P~D~lD~CC~~HD~Cy~~~-------------~~~~~~c~C~~~f~~Cl~~~~~ 80 (117)
T cd04706 24 YGKYCGPGYSGCP--GERPCDDLDACCMTHDACVQAK-------------KNDYLSLECNEKFKNCVRRFRK 80 (117)
T ss_pred cCcccCCCCCCCC--CCCCcchhhHHHHhCcCcccCC-------------CCCcCCchHHHHHHHHHHHhcc
Confidence 6899999998721 2223358999999999998743 2457999999999999999864
No 13
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac. Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures.
Probab=98.78 E-value=1.2e-08 Score=76.15 Aligned_cols=55 Identities=38% Similarity=0.648 Sum_probs=45.6
Q ss_pred cEEEEecCeEEecchhhhhccCchhhhhhcCC--CCCCCEEEecCcccccccchHHHHHHhh
Q psy7972 207 DVTLACEGKHIRAHKVMLSACSTYFDAILSQH--DETNPIVVFKDVRVHCRCDKKFYDCLKT 266 (303)
Q Consensus 207 DVtl~v~g~~f~AHK~VLAa~S~yFramF~~~--e~~~~~I~L~~vs~~ClcD~~f~~~L~~ 266 (303)
||++.++|+.|++||.+|++.|+||+.||.+. +.....|.++++++ ..|+.+|++
T Consensus 1 dv~i~v~~~~~~~h~~iL~~~s~~f~~~~~~~~~~~~~~~i~l~~~~~-----~~f~~~l~~ 57 (90)
T smart00225 1 DVTLVVGGKKFKAHKAVLAACSPYFKALFSGDFKESKKSEIYLDDVSP-----EDFRALLEF 57 (90)
T ss_pred CeEEEECCEEEehHHHHHhhcCHHHHHHHcCCCccCCCCEEEecCCCH-----HHHHHHHHe
Confidence 78999999999999999999999999999876 33678899999887 455544444
No 14
>KOG2075|consensus
Probab=98.48 E-value=1.6e-07 Score=93.14 Aligned_cols=80 Identities=23% Similarity=0.385 Sum_probs=71.8
Q ss_pred ccccccccchhhhHHHHhccCCcccEEEEecC-----eEEecchhhhhccCchhhhhhcCC--CCCCCEEEecCcccccc
Q psy7972 183 LRWKYHHSNLQSMFSQLLERECFCDVTLACEG-----KHIRAHKVMLSACSTYFDAILSQH--DETNPIVVFKDVRVHCR 255 (303)
Q Consensus 183 Lrws~h~~~ll~~L~~lr~~~~l~DVtl~v~g-----~~f~AHK~VLAa~S~yFramF~~~--e~~~~~I~L~~vs~~Cl 255 (303)
+.|+-....+......++++..++||.++|++ +.|||||.|||..|.+|.+||.+. +....+|+++||.+
T Consensus 92 ~nwq~~~~t~~er~~~l~~n~~~adv~fivg~~~~~~q~~paHk~vla~gS~VFdaMf~g~~a~~~s~ei~lpdvep--- 168 (521)
T KOG2075|consen 92 PNWQAQKETMRERQAALFNNELLADVHFIVGEEDGGSQRIPAHKLVLADGSDVFDAMFYGGLAEDASLEIRLPDVEP--- 168 (521)
T ss_pred cccccchhhHHHhhHhhccCcccceeEEEeccCCCcccccchhhhhhhcchHHHHHHhccCcccccCceeecCCcCh---
Confidence 56888888899999999999999999999973 789999999999999999999997 55688999999998
Q ss_pred cchHHHHHHhhh
Q psy7972 256 CDKKFYDCLKTA 267 (303)
Q Consensus 256 cD~~f~~~L~~a 267 (303)
..|..+|++.
T Consensus 169 --aaFl~~L~fl 178 (521)
T KOG2075|consen 169 --AAFLAFLRFL 178 (521)
T ss_pred --hHhHHHHHHH
Confidence 6888888886
No 15
>cd00125 PLA2c PLA2c: Phospholipase A2, a family of secretory and cytosolic enzymes; the latter are either Ca dependent or Ca independent. PLA2 cleaves the sn-2 position of the glycerol backbone of phospholipids (PC or phosphatidylethanolamine), usually in a metal-dependent reaction, to generate lysophospholipid (LysoPL) and a free fatty acid (FA). The resulting products are either dietary or used in synthetic pathways for leukotrienes and prostaglandins. Often, arachidonic acid is released as a free fatty acid and acts as second messenger in signaling networks. Secreted PLA2s have also been found to specifically bind to a variety of soluble and membrane proteins in mammals, including receptors. As a toxin, PLA2 is a potent presynaptic neurotoxin which blocks nerve terminals by binding to the nerve membrane and hydrolyzing stable membrane lipids. The products of the hydrolysis (LysoPL and FA) cannot form bilayers leading to a change in membrane conformation and ultimately to a block in
Probab=98.33 E-value=2.1e-07 Score=77.08 Aligned_cols=63 Identities=27% Similarity=0.569 Sum_probs=47.6
Q ss_pred CcccCCCCCCCCCCCCCCcchhhhhcccccCCcccccccC-------ccCCcccC--------CccccccccchhHHHHH
Q psy7972 71 TKWCGAGDIATDYNDLGTNVETDKCCRDHDHCSEYILAKS-------SLHGLRNN--------APFTRVHCRCDKKFYDC 135 (303)
Q Consensus 71 T~WCG~g~~a~~~~~lG~~~~tD~CCr~HD~C~~~I~~~~-------~k~gl~N~--------~~~t~shC~CD~~f~~C 135 (303)
--|||.|....+-+ ++|+||+.||.|...+.... ++|...+. .+-.+..|+||+++..|
T Consensus 24 GCyCG~GG~G~PvD------~~DrCC~~HD~CY~~~~~~~C~p~~~~Y~y~~~~~~i~C~~~~~~C~~~~CeCDr~aa~C 97 (115)
T cd00125 24 GCYCGLGGSGTPVD------DTDRCCQVHDCCYDRAEKGGCSPYFTSYSYTCSDGQITCSDANDKCARALCECDRAAALC 97 (115)
T ss_pred CCccCCCCCCCCcc------cHHHHHHHHHhHHhccccCCCccccccceEEEECCcceECcCCChHhHHHhHccHHHHHH
Confidence 46999999888877 89999999999999775322 22222222 23348899999999999
Q ss_pred hhhh
Q psy7972 136 LKTA 139 (303)
Q Consensus 136 L~~~ 139 (303)
|.+.
T Consensus 98 f~~~ 101 (115)
T cd00125 98 FARA 101 (115)
T ss_pred HhhC
Confidence 9975
No 16
>cd04707 otoconin_90 otoconin_90: Phospholipase A2-like domains present in otoconin-90 and otoconin-95, mammal proteins that are principal matrix proteins of calcitic otoconia. Interactions involving otoconin-90 may trigger or constitute key events in otoconia formation. The PLA2-like domains in otoconins may have lost their metal-binding sites.
Probab=98.17 E-value=6.6e-07 Score=74.28 Aligned_cols=63 Identities=24% Similarity=0.499 Sum_probs=45.8
Q ss_pred CcccCCCCCCCCCCCCCCcchhhhhcccccCCcccccccCc--------cCCccc-------CCccccccccchhHHHHH
Q psy7972 71 TKWCGAGDIATDYNDLGTNVETDKCCRDHDHCSEYILAKSS--------LHGLRN-------NAPFTRVHCRCDKKFYDC 135 (303)
Q Consensus 71 T~WCG~g~~a~~~~~lG~~~~tD~CCr~HD~C~~~I~~~~~--------k~gl~N-------~~~~t~shC~CD~~f~~C 135 (303)
--|||.|....+-+ ++|+||..||.|.+.+..... .|-..| ..+-.+..|+||+++..|
T Consensus 21 GCyCG~GG~G~PvD------~~DrCC~~HD~CY~~~~~~~C~~~~~~~Y~y~c~~~~i~C~~~~~C~~~vCeCDk~aa~C 94 (117)
T cd04707 21 GCYCGQEGEGLPVD------ELDRCCFQHRCCLEQASEMGCLQDRKLSTEVTCVDHKPKCEGVSVCEKLLCTCDKTAAEC 94 (117)
T ss_pred CCcccCCCCCCCcc------cchhHHHHhHHHHhhhhhcCCCCCCCcceEEEEECCccccCCCChHHHHHhhccHHHHHH
Confidence 56999999888777 899999999999996642221 111121 222346789999999999
Q ss_pred hhhh
Q psy7972 136 LKTA 139 (303)
Q Consensus 136 L~~~ 139 (303)
|.+.
T Consensus 95 f~~~ 98 (117)
T cd04707 95 MAAA 98 (117)
T ss_pred hccC
Confidence 9873
No 17
>KOG4591|consensus
Probab=97.99 E-value=3.9e-06 Score=75.67 Aligned_cols=81 Identities=28% Similarity=0.500 Sum_probs=62.7
Q ss_pred cccccchhhhHHHHhccCCcccEEEEecC---eEEecchhhhhccCchhhhhhcCC-CCCCCEEEecCcccccccchHHH
Q psy7972 186 KYHHSNLQSMFSQLLERECFCDVTLACEG---KHIRAHKVMLSACSTYFDAILSQH-DETNPIVVFKDVRVHCRCDKKFY 261 (303)
Q Consensus 186 s~h~~~ll~~L~~lr~~~~l~DVtl~v~g---~~f~AHK~VLAa~S~yFramF~~~-e~~~~~I~L~~vs~~ClcD~~f~ 261 (303)
..+++.++.--..|.++..|+|+++.++| +.++|||.||||+|.+.. |.+. .....+..+.|++++ +|.
T Consensus 47 dSF~SRLLaitadL~Ek~qfSDlk~K~~gns~k~i~AHKfVLAARsD~Wk--faN~~dekse~~~~dDad~E-----a~~ 119 (280)
T KOG4591|consen 47 DSFISRLLAITADLLEKEQFSDLKFKFAGNSDKHIPAHKFVLAARSDFWK--FANGGDEKSEELDLDDADFE-----AFH 119 (280)
T ss_pred hhHHHHHHHHHHHHhhcccccceeEEecCCccccCchhhhhhhhhcchhh--hccCCCcchhhhcccccCHH-----HHH
Confidence 45677888888999999999999999985 789999999999999876 5554 334556777788873 333
Q ss_pred HHHhhhhccCCChHHHHhhhcccccc
Q psy7972 262 DCLKTAADTGDQPSQMVGYMYFNLLE 287 (303)
Q Consensus 262 ~~L~~a~d~i~~~~~~v~~lY~~~l~ 287 (303)
- ++..+|+.+|+
T Consensus 120 t--------------~iRWIYTDEid 131 (280)
T KOG4591|consen 120 T--------------AIRWIYTDEID 131 (280)
T ss_pred H--------------hheeeeccccc
Confidence 2 56667777764
No 18
>KOG4087|consensus
Probab=97.98 E-value=1.9e-06 Score=73.11 Aligned_cols=68 Identities=29% Similarity=0.567 Sum_probs=50.4
Q ss_pred ceeeCC-CcccCCCCCCCCCCCCCCcchhhhhcccccCCccccccc-------CccCCcccCCcc--------ccccccc
Q psy7972 65 DLIFPG-TKWCGAGDIATDYNDLGTNVETDKCCRDHDHCSEYILAK-------SSLHGLRNNAPF--------TRVHCRC 128 (303)
Q Consensus 65 ~~~~pG-T~WCG~g~~a~~~~~lG~~~~tD~CCr~HD~C~~~I~~~-------~~k~gl~N~~~~--------t~shC~C 128 (303)
.+.|-+ -=|||-|....+-+ +||+||.+||.|++..+.. .++|..-|...+ ...-|+|
T Consensus 38 ~l~Y~~YGCyCGlGG~G~P~D------~iDwCC~~HDcCY~~le~~gC~py~~~Ys~sc~n~~I~Cs~~~~~C~~~lC~C 111 (144)
T KOG4087|consen 38 ALSYNKYGCYCGLGGSGQPKD------AIDWCCHAHDCCYDRLEEKGCSPYTERYSWSCSNQSITCSDKNTECEAQLCEC 111 (144)
T ss_pred cceecCccccccCCCCCCccc------hHHHHHhcccHHHHHHHHcCCCccccceeeEeeCCeEEeCCCccHHHHHHhhh
Confidence 344443 56999999999988 9999999999999866533 233444443332 2457999
Q ss_pred hhHHHHHhhh
Q psy7972 129 DKKFYDCLKT 138 (303)
Q Consensus 129 D~~f~~CL~~ 138 (303)
|++...||++
T Consensus 112 Dk~~a~C~~r 121 (144)
T KOG4087|consen 112 DKKAAECLKR 121 (144)
T ss_pred hhHHHHHHhc
Confidence 9999999999
No 19
>PF00068 Phospholip_A2_1: Phospholipase A2; InterPro: IPR001211 Phospholipase A2 (3.1.1.4 from EC) (PLA2) is a small lipolytic enzyme that releases fatty acids from the second carbon group of glycerol. It is involved in a number of physiologically important cellular processes, such as the liberation of arachidonic acid from membrane phospholipids []. It plays a pivotal role in the biosynthesis of prostaglandin and other mediators of inflammation. PLA2 has four to seven disulphide bonds and binds a calcium ion that is essential for activity. Within the active enzyme, the alpha amino group is involved in a conserved hydrogen-bonding network linking the N-terminal region to the active site. The side chains of two conserved residues, His and Asp, participate in the catalytic network. Many PLA2's are widely distributed in snakes, lizards, bees and mammals. In mammals there are at least four forms: pancreatic, membrane-associated as well as two less well characterised forms. The venom of most snakes contains multiple forms of PLA2. Some of them are presynaptic neurotoxins which inhibit neuromuscular transmission by blocking acetylcholine release from the nerve termini. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Api m 1.; GO: 0004623 phospholipase A2 activity, 0005509 calcium ion binding, 0016042 lipid catabolic process; PDB: 1OQS_F 1S6B_B 1XXW_B 1MH2_B 2RD4_B 1OZ6_A 2OSN_A 2PH4_B 1FDK_A 2BP2_A ....
Probab=97.55 E-value=1.6e-05 Score=65.82 Aligned_cols=62 Identities=35% Similarity=0.768 Sum_probs=43.8
Q ss_pred cccCCCCCCCCCCCCCCcchhhhhcccccCCcccccccCc-----cCCc--cc-------CCccccccccchhHHHHHhh
Q psy7972 72 KWCGAGDIATDYNDLGTNVETDKCCRDHDHCSEYILAKSS-----LHGL--RN-------NAPFTRVHCRCDKKFYDCLK 137 (303)
Q Consensus 72 ~WCG~g~~a~~~~~lG~~~~tD~CCr~HD~C~~~I~~~~~-----k~gl--~N-------~~~~t~shC~CD~~f~~CL~ 137 (303)
-|||.|....+-+ ++|+||+.|+.|..-+...+. .|.+ .+ ...-....|.||++|..||.
T Consensus 26 CyCg~~g~G~PvD------~iD~~C~~h~~Cy~~~~~~~C~~~~~~Y~~~~~~~~i~C~~~~~C~~~lCeCD~~~A~cl~ 99 (116)
T PF00068_consen 26 CYCGFGGKGQPVD------EIDRCCRKHDQCYKCAKEKGCDPYFTSYSYSCSNKNITCSDNDSCERALCECDKAFAECLA 99 (116)
T ss_dssp TTBSSSSSSS-SS------HHHHHHHHHHHHHHHHTTTTSSTTTSS-EEEEETTEEEEESSSHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCCCCCCcc------cccchhHHhHHHHHHHhcccccccccceEEEEecCCcccCCCCchhHHhhhCcHHHHHHHH
Confidence 4999988777666 899999999999886644322 1221 11 12224788999999999999
Q ss_pred hh
Q psy7972 138 TA 139 (303)
Q Consensus 138 ~~ 139 (303)
+.
T Consensus 100 ~~ 101 (116)
T PF00068_consen 100 RN 101 (116)
T ss_dssp HT
T ss_pred hC
Confidence 85
No 20
>KOG0783|consensus
Probab=97.47 E-value=0.00011 Score=77.34 Aligned_cols=75 Identities=23% Similarity=0.328 Sum_probs=50.8
Q ss_pred hhhhHHHHhc----cCCcccEEEEecCeEEecchhhhhccCchhhhhhcCC--CCCCCEEEecCcccc-c------ccch
Q psy7972 192 LQSMFSQLLE----RECFCDVTLACEGKHIRAHKVMLSACSTYFDAILSQH--DETNPIVVFKDVRVH-C------RCDK 258 (303)
Q Consensus 192 ll~~L~~lr~----~~~l~DVtl~v~g~~f~AHK~VLAa~S~yFramF~~~--e~~~~~I~L~~vs~~-C------lcD~ 258 (303)
+-..+..|.. ...+.|||+.||++.|+|||.||+++|++||.+|... .+....|.+.+++.+ | +.+.
T Consensus 541 fe~sf~kLl~e~~~~ds~hDVtf~vg~~~F~aHKfIl~~rs~flrkL~l~~~~~s~~~dIY~~~~~~~~~~~~ve~i~p~ 620 (1267)
T KOG0783|consen 541 FEGSFPKLLSEENYKDSFHDVTFYVGTSMFHAHKFILCARSSFLRKLLLQKKKSSVSNDIYIEEITQSHSTIRVEDIPPL 620 (1267)
T ss_pred chhhhHHHhhccccccccceEEEEecCeecccceEEEEeccHHHHHHHHhhccccccceeeeecccccCceeeeccCCHH
Confidence 3444454443 3567899999999999999999999999999999764 333345555544432 1 2235
Q ss_pred HHHHHHhh
Q psy7972 259 KFYDCLKT 266 (303)
Q Consensus 259 ~f~~~L~~ 266 (303)
+|+-+|.+
T Consensus 621 mfe~lL~~ 628 (1267)
T KOG0783|consen 621 MFEILLHY 628 (1267)
T ss_pred HHHHHHHH
Confidence 55555555
No 21
>PF05826 Phospholip_A2_2: Phospholipase A2; InterPro: IPR001211 Phospholipase A2 (3.1.1.4 from EC) (PLA2) is a small lipolytic enzyme that releases fatty acids from the second carbon group of glycerol. It is involved in a number of physiologically important cellular processes, such as the liberation of arachidonic acid from membrane phospholipids []. It plays a pivotal role in the biosynthesis of prostaglandin and other mediators of inflammation. PLA2 has four to seven disulphide bonds and binds a calcium ion that is essential for activity. Within the active enzyme, the alpha amino group is involved in a conserved hydrogen-bonding network linking the N-terminal region to the active site. The side chains of two conserved residues, His and Asp, participate in the catalytic network. Many PLA2's are widely distributed in snakes, lizards, bees and mammals. In mammals there are at least four forms: pancreatic, membrane-associated as well as two less well characterised forms. The venom of most snakes contains multiple forms of PLA2. Some of them are presynaptic neurotoxins which inhibit neuromuscular transmission by blocking acetylcholine release from the nerve termini. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Api m 1.; GO: 0004623 phospholipase A2 activity, 0005509 calcium ion binding, 0016042 lipid catabolic process; PDB: 1POC_A.
Probab=97.38 E-value=5.6e-05 Score=61.06 Aligned_cols=42 Identities=45% Similarity=1.141 Sum_probs=33.7
Q ss_pred cccccchHHHHHHhhhhccCCChHHHHhhhccccccccccccccc
Q psy7972 252 VHCRCDKKFYDCLKTAADTGDQPSQMVGYMYFNLLETQCFQEDYP 296 (303)
Q Consensus 252 ~~ClcD~~f~~~L~~a~d~i~~~~~~v~~lY~~~l~~~Cf~~~~p 296 (303)
++|.||..|+.+|+.+.+. ++..|+.+||+.|+.+||+++||
T Consensus 58 ~hC~Cd~~f~~CL~~~~~~---~a~~Vg~~yF~v~~~~Cf~~~~p 99 (99)
T PF05826_consen 58 SHCDCDSRFYQCLKNVNTS---TANEVGNIYFNVLQPPCFELEYP 99 (99)
T ss_dssp EBHHHHHHHHHHHHTS-HH---HHHHHHHHHHHTS---EEEEES-
T ss_pred eecCcccHHHHHHHHcCCc---hHHHHHHHHHhccCCCeeCccCC
Confidence 4799999999999996554 58899999999999999999997
No 22
>cd04704 PLA2_bee_venom_like PLA2_bee_venom_like: A sub-family of Phospholipase A2, similar to bee venom PLA2. PLA2 is a super-family of secretory and cytosolic enzymes; the latter are either Ca dependent or Ca independent. Enzymatically active PLA2 cleaves the sn-2 position of the glycerol backbone of phospholipids; secreted PLA2s have also been found to specifically bind to a variety of soluble and membrane proteins in mammals, including receptors. As a toxin, PLA2 is a potent presynaptic neurotoxin which blocks nerve terminals by binding to the nerve membrane and hydrolyzing stable membrane lipids. The products of the hydrolysis cannot form bilayers leading to a change in membrane conformation and ultimately to a block in the release of neurotransmitters. PLA2 may form dimers or oligomers. Bee venom PLA2 has fewer conserved disulfide bridges than most canonical PLA2s.
Probab=96.58 E-value=0.0013 Score=52.95 Aligned_cols=39 Identities=46% Similarity=1.038 Sum_probs=34.5
Q ss_pred cccccchHHHHHHhhhhccCCChHHHHhhhcccccccccccc
Q psy7972 252 VHCRCDKKFYDCLKTAADTGDQPSQMVGYMYFNLLETQCFQE 293 (303)
Q Consensus 252 ~~ClcD~~f~~~L~~a~d~i~~~~~~v~~lY~~~l~~~Cf~~ 293 (303)
.+|.||..|+.+|+.+.+ ..+..|+.+||+.++++||++
T Consensus 59 ~~C~CD~~f~~CL~~~~~---~~s~~vG~~yFnv~~~~Cf~~ 97 (97)
T cd04704 59 SHCDCDNRFRQCLKNVND---STSNQVGKIYFNVLQVPCFEL 97 (97)
T ss_pred ccCcHHHHHHHHHHHcCC---HHHHHHHHHhhcccCCCccCC
Confidence 469999999999999654 378899999999999999985
No 23
>KOG4682|consensus
Probab=96.34 E-value=0.0035 Score=61.91 Aligned_cols=52 Identities=27% Similarity=0.390 Sum_probs=44.7
Q ss_pred HHHHhccCCcccEEEEecCeEEecchhhhhccCchhhhhhcCC--CCCCCEEEec
Q psy7972 196 FSQLLERECFCDVTLACEGKHIRAHKVMLSACSTYFDAILSQH--DETNPIVVFK 248 (303)
Q Consensus 196 L~~lr~~~~l~DVtl~v~g~~f~AHK~VLAa~S~yFramF~~~--e~~~~~I~L~ 248 (303)
+..|+.+|.-+||.+.+-|++++.||.-|.. |+||.+||.+. |+.+..|.|.
T Consensus 60 yq~lf~q~enSDv~l~alg~eWrlHk~yL~Q-S~yf~smf~Gtw~es~~~iIqle 113 (488)
T KOG4682|consen 60 YQNLFLQGENSDVILEALGFEWRLHKPYLFQ-SEYFKSMFSGTWKESSMNIIQLE 113 (488)
T ss_pred HHHHHhcCCCcceehhhccceeeeeeeeeec-cHHHHHHhccccChhhCceEEEE
Confidence 4567889999999999999999999999865 68999999997 7777766664
No 24
>KOG0783|consensus
Probab=96.16 E-value=0.0016 Score=68.96 Aligned_cols=46 Identities=24% Similarity=0.384 Sum_probs=34.0
Q ss_pred CcccEEEEe-cCeEEecchhhhhccCchhhhhhcCC--CCCCCEEEecCcc
Q psy7972 204 CFCDVTLAC-EGKHIRAHKVMLSACSTYFDAILSQH--DETNPIVVFKDVR 251 (303)
Q Consensus 204 ~l~DVtl~v-~g~~f~AHK~VLAa~S~yFramF~~~--e~~~~~I~L~~vs 251 (303)
..-|+++.+ +|+.|+|||.+|+|+++||..||+.- |+.. |.+.++.
T Consensus 709 e~~d~~i~~KDGkvl~aHkc~L~aRlEYF~smf~~~w~E~sS--~t~~~~p 757 (1267)
T KOG0783|consen 709 ETMDTVIKLKDGKVLKAHKCFLSARLEYFSSMFQFVWMESSS--ITVNLSP 757 (1267)
T ss_pred cceeEEEEecCCcCcccceeEeeeHHHHHHHHHHHHHhhhcc--ceeecCc
Confidence 444555544 78889999999999999999999875 4443 5544444
No 25
>KOG2838|consensus
Probab=96.01 E-value=0.0048 Score=58.36 Aligned_cols=77 Identities=17% Similarity=0.260 Sum_probs=52.3
Q ss_pred cchhhhHHHHhccCCcccEEEEecCeEEecchhhhhccCchhhhhhcCCCCCCCEEEecCcccccccchHHHHHHhhh
Q psy7972 190 SNLQSMFSQLLERECFCDVTLACEGKHIRAHKVMLSACSTYFDAILSQHDETNPIVVFKDVRVHCRCDKKFYDCLKTA 267 (303)
Q Consensus 190 ~~ll~~L~~lr~~~~l~DVtl~v~g~~f~AHK~VLAa~S~yFramF~~~e~~~~~I~L~~vs~~ClcD~~f~~~L~~a 267 (303)
.++++.+....+...-.|+.|......|||||++||++.|+|+.+.+..+....++. -++...-....+|..+|...
T Consensus 115 ~sf~kD~ad~ye~k~c~dldiiFkeTcfpahRA~laaRCpffK~l~nsd~e~~ae~i-~dik~ag~dm~~feafLh~l 191 (401)
T KOG2838|consen 115 NSFLKDFADGYERKVCGDLDIIFKETCFPAHRAFLAARCPFFKILANSDEEPEAEDI-CDIKFAGFDMDAFEAFLHSL 191 (401)
T ss_pred hHHHHHHhhhhheeeeccceeeeeeccchHHHHHHHhhCcchhhhccCCCCcchhhh-hhhhhhccChHHHHHHHHHH
Confidence 456777788777777889999999999999999999999999988876533222221 12222111225566666553
No 26
>PF08398 Parvo_coat_N: Parvovirus coat protein VP1; InterPro: IPR013607 Parvoviruses are some of the smallest viruses containing linear, non-segmented single-stranded DNA genomes, with an average genome size of 5000 nucleotides. Parvoviruses have been described that infect a wide range of invertebrates and vertebrates and are well known for causing enteric disease in mammals. Genomes contains two large ORFs: NS1 and VP1; other ORFs are found in some sub-types and different gene products can arise from splice variants and the use of different start codons []. This is the N-terminal region of the Parvovirus VP1 coat protein []; its function is not known. ; GO: 0005198 structural molecule activity, 0019028 viral capsid
Probab=95.59 E-value=0.0041 Score=46.29 Aligned_cols=39 Identities=23% Similarity=0.400 Sum_probs=30.3
Q ss_pred eCCCcccCCCCCCCCCCCCCCcchhhhhcccccCCccc-cccc
Q psy7972 68 FPGTKWCGAGDIATDYNDLGTNVETDKCCRDHDHCSEY-ILAK 109 (303)
Q Consensus 68 ~pGT~WCG~g~~a~~~~~lG~~~~tD~CCr~HD~C~~~-I~~~ 109 (303)
+||++++||||.-.+-.. -..+|..+|+||.+.+. |..+
T Consensus 1 lPg~~YlGPgn~l~~g~P---v~~~D~aA~~HD~aY~~~lk~G 40 (64)
T PF08398_consen 1 LPGYKYLGPGNPLDNGEP---VNPVDAAAREHDEAYDELLKHG 40 (64)
T ss_pred CCCCCccCCCCCcCCCCC---CCHHHHHHHHHHHHHHHHHHcC
Confidence 599999999998544432 24889999999999885 4444
No 27
>KOG2838|consensus
Probab=93.23 E-value=0.049 Score=51.72 Aligned_cols=47 Identities=28% Similarity=0.553 Sum_probs=35.2
Q ss_pred chhhhHHHHhccCCcccEEEE--ecC--------------eEEecchhhhhccCchhhhhhcC
Q psy7972 191 NLQSMFSQLLERECFCDVTLA--CEG--------------KHIRAHKVMLSACSTYFDAILSQ 237 (303)
Q Consensus 191 ~ll~~L~~lr~~~~l~DVtl~--v~g--------------~~f~AHK~VLAa~S~yFramF~~ 237 (303)
.+-..+..|+++...-|+.|. ++| .+++|||+|.|++|++||.++..
T Consensus 221 kLd~Dmkglfd~~c~~d~li~~ssD~elveafggeeNc~deeikahkai~aaRS~ffRnLL~R 283 (401)
T KOG2838|consen 221 KLDEDMKGLFDQDCKHDDLIIESSDGELVEAFGGEENCEDEEIKAHKAIAAARSKFFRNLLLR 283 (401)
T ss_pred hhhHHHHHHHHhhcccCcEEEEeccchhhhhcCCcccchhHHHHHHHHHHHhhhHHHHHHHHH
Confidence 355566777777766665553 343 36999999999999999999875
No 28
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a POZ domain with a core structure consisting of beta(2)/alpha(2)/beta(2)/alpha(2) in two layers, alpha/beta. This domain is found at the N-terminal of SKP1 proteins [] as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1LM8_C 2XAI_E 1VCB_E 3ZRC_K 3ZRF_E 3DCG_B 2C9W_C 1LQB_B 2IZV_C 1HV2_A ....
Probab=88.21 E-value=1.7 Score=31.59 Aligned_cols=44 Identities=14% Similarity=0.252 Sum_probs=32.6
Q ss_pred EEEEe-cCeEEecchhhhhccCchhhhhhcCCCCCCCEEEecCccc
Q psy7972 208 VTLAC-EGKHIRAHKVMLSACSTYFDAILSQHDETNPIVVFKDVRV 252 (303)
Q Consensus 208 Vtl~v-~g~~f~AHK~VLAa~S~yFramF~~~e~~~~~I~L~~vs~ 252 (303)
|+|+. ||+.|.+-+.++. .|..++.|+.+.......|.|++|++
T Consensus 3 v~L~SsDg~~f~V~~~~a~-~S~~i~~ml~~~~~~~~~Ipl~~v~~ 47 (62)
T PF03931_consen 3 VKLVSSDGQEFEVSREAAK-QSKTIKNMLEDLGDEDEPIPLPNVSS 47 (62)
T ss_dssp EEEEETTSEEEEEEHHHHT-TSHHHHHHHHCTCCCGTEEEETTS-H
T ss_pred EEEEcCCCCEEEeeHHHHH-HhHHHHHHHhhhcccccccccCccCH
Confidence 45544 7899999887665 78999999987533333899999998
No 29
>PF06951 PLA2G12: Group XII secretory phospholipase A2 precursor (PLA2G12); InterPro: IPR010711 This family consists of several group XII secretory phospholipase A2 precursor (PLA2G12) (3.1.1.4 from EC) proteins. Group XII and group V PLA(2)s are thought to participate in helper T cell immune response through release of immediate second signals and generation of downstream eicosanoids [].; GO: 0004623 phospholipase A2 activity, 0005509 calcium ion binding, 0016042 lipid catabolic process, 0005576 extracellular region
Probab=86.67 E-value=0.41 Score=42.86 Aligned_cols=58 Identities=26% Similarity=0.519 Sum_probs=37.6
Q ss_pred ceeeCCCcccCCCCCCCCCCCCCCcchhhhhcccccCCcccccccCccCCcccCCccccccccchhHHHHHhhhh
Q psy7972 65 DLIFPGTKWCGAGDIATDYNDLGTNVETDKCCRDHDHCSEYILAKSSLHGLRNNAPFTRVHCRCDKKFYDCLKTA 139 (303)
Q Consensus 65 ~~~~pGT~WCG~g~~a~~~~~lG~~~~tD~CCr~HD~C~~~I~~~~~k~gl~N~~~~t~shC~CD~~f~~CL~~~ 139 (303)
+.-.|--+-||+--....++. |. ...-.||-.||.|+++=.. +.=.||.+|+.||.++
T Consensus 73 g~k~p~~NGCGS~~~G~~~d~-~i-P~~t~CCn~HDiCYdTCg~---------------~K~~CD~~F~~CL~~~ 130 (184)
T PF06951_consen 73 GYKPPEPNGCGSYFLGLQIDI-GI-PAMTKCCNQHDICYDTCGS---------------SKEDCDSQFKSCLEKI 130 (184)
T ss_pred CCCCCCCCCCCCcccCCcccC-CC-CchhccchhhhhHHHccCC---------------CHHHHHHHHHHHHHHH
Confidence 445567788998222122222 22 2378999999999874321 2225999999999986
No 30
>KOG0511|consensus
Probab=78.39 E-value=0.7 Score=45.86 Aligned_cols=58 Identities=22% Similarity=0.191 Sum_probs=37.3
Q ss_pred cccEEEEe-cCeEEecchhhhhccCchhhhhhcCCCCCCCEEEecCcccccccchHHHHHHhhh
Q psy7972 205 FCDVTLAC-EGKHIRAHKVMLSACSTYFDAILSQHDETNPIVVFKDVRVHCRCDKKFYDCLKTA 267 (303)
Q Consensus 205 l~DVtl~v-~g~~f~AHK~VLAa~S~yFramF~~~e~~~~~I~L~~vs~~ClcD~~f~~~L~~a 267 (303)
-.|+++.+ +|+.|-|||..|+|+|++|..-+........+|+-+.|-+ ..|..+|++.
T Consensus 149 ~~di~f~~q~g~~f~ahkfll~arSs~~~~k~v~~~~~~heI~~~~v~~-----~~f~~flk~l 207 (516)
T KOG0511|consen 149 CHDIDFLQQEGANFDAHKFLLEARSSNYFPKDVMFYVQGHEIEAHRVIL-----SAFSPFLKQL 207 (516)
T ss_pred ccchHHHhhccccccHHHHHHHhhhcccCchhhhhccccCchhhhhhhH-----hhhhHHHHHH
Confidence 35777766 5788889999999999988765544322233343233333 4677777774
No 31
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....
Probab=77.59 E-value=5 Score=30.99 Aligned_cols=55 Identities=16% Similarity=0.182 Sum_probs=42.1
Q ss_pred EEEEecCeEEecchhhhh-ccCchhhhhhcCC-----CCCCCEEEecCcccccccchHHHHHHhhhh
Q psy7972 208 VTLACEGKHIRAHKVMLS-ACSTYFDAILSQH-----DETNPIVVFKDVRVHCRCDKKFYDCLKTAA 268 (303)
Q Consensus 208 Vtl~v~g~~f~AHK~VLA-a~S~yFramF~~~-----e~~~~~I~L~~vs~~ClcD~~f~~~L~~a~ 268 (303)
|+|.|+|+.|.+-+..|. ....+|..|+... ......+.| |-++ ..|+.+|.+.+
T Consensus 1 V~lNVGG~~f~~~~~tL~~~~~s~l~~~~~~~~~~~~~~~~~~~fi-DRdp-----~~F~~IL~ylr 61 (94)
T PF02214_consen 1 VRLNVGGTIFETSRSTLTRYPDSLLARLFSGERSDDYDDDDGEYFI-DRDP-----ELFEYILNYLR 61 (94)
T ss_dssp EEEEETTEEEEEEHHHHHTSTTSTTTSHHHTGHGGGEETTTTEEEE-SS-H-----HHHHHHHHHHH
T ss_pred CEEEECCEEEEEcHHHHhhCCCChhhhHHhhccccccCCccceEEe-ccCh-----hhhhHHHHHHh
Confidence 689999999999999998 6678999999853 334566665 4455 78888888853
No 32
>cd04705 PLA2_group_III_like PLA2_group_III_like: A sub-family of Phospholipase A2, similar to human group III PLA2. PLA2 is a super-family of secretory and cytosolic enzymes; the latter are either Ca dependent or Ca independent. Enzymatically active PLA2 cleaves the sn-2 position of the glycerol backbone of phospholipids; secreted PLA2s have also been found to specifically bind to a variety of soluble and membrane proteins in mammals, including receptors. As a toxin, PLA2 is a potent presynaptic neurotoxin which blocks nerve terminals by binding to the nerve membrane and hydrolyzing stable membrane lipids. The products of the hydrolysis cannot form bilayers leading to a change in membrane conformation and ultimately to a block in the release of neurotransmitters. PLA2 may form dimers or oligomers.
Probab=74.18 E-value=2.2 Score=34.68 Aligned_cols=18 Identities=39% Similarity=1.099 Sum_probs=15.6
Q ss_pred cccccchHHHHHHhhhhc
Q psy7972 252 VHCRCDKKFYDCLKTAAD 269 (303)
Q Consensus 252 ~~ClcD~~f~~~L~~a~d 269 (303)
++|+||..|+.+|+.+.+
T Consensus 66 sHCdCD~rf~~CL~~~n~ 83 (100)
T cd04705 66 SHCDCDSRLKDCLRLSSS 83 (100)
T ss_pred ccccHHHHHHHHHHHcCC
Confidence 579999999999999644
No 33
>KOG3473|consensus
Probab=71.97 E-value=7.3 Score=31.74 Aligned_cols=45 Identities=22% Similarity=0.307 Sum_probs=33.7
Q ss_pred EEEEe-cCeEEecchhhhhccCchhhhhhcCC----CCCCCEEEecCcccc
Q psy7972 208 VTLAC-EGKHIRAHKVMLSACSTYFDAILSQH----DETNPIVVFKDVRVH 253 (303)
Q Consensus 208 Vtl~v-~g~~f~AHK~VLAa~S~yFramF~~~----e~~~~~I~L~~vs~~ 253 (303)
|.|+. +|++|-.-| -+|.-|+-.|+||.+. +....+|.++++.++
T Consensus 19 VkLvS~Ddhefiikr-e~AmtSgTiraml~gpg~~se~~~n~v~f~di~sh 68 (112)
T KOG3473|consen 19 VKLVSSDDHEFIIKR-EHAMTSGTIRAMLSGPGVFSEAEKNEVYFRDIPSH 68 (112)
T ss_pred eEeecCCCcEEEEee-hhhhhhhHHHHHHcCCccccccccceEEeccchHH
Confidence 34444 566666544 4678899999999975 566789999999985
No 34
>smart00512 Skp1 Found in Skp1 protein family. Family of Skp1 (kinetochore protein required for cell cycle progression) and elongin C (subunit of RNA polymerase II transcription factor SIII) homologues.
Probab=58.89 E-value=13 Score=29.42 Aligned_cols=54 Identities=17% Similarity=0.276 Sum_probs=38.2
Q ss_pred EEEEe-cCeEEecchhhhhccCchhhhhhcCC--C-CCCCEEEecCcccccccchHHHHHHhhh
Q psy7972 208 VTLAC-EGKHIRAHKVMLSACSTYFDAILSQH--D-ETNPIVVFKDVRVHCRCDKKFYDCLKTA 267 (303)
Q Consensus 208 Vtl~v-~g~~f~AHK~VLAa~S~yFramF~~~--e-~~~~~I~L~~vs~~ClcD~~f~~~L~~a 267 (303)
|+|.. +|+.|.+.+.+. ..|..++.|+... + .....|.|++|++ ..+..++++.
T Consensus 4 v~L~S~Dg~~f~v~~~~a-~~S~~i~~~l~~~~~~~~~~~~Ipl~~v~~-----~~L~~Vi~yc 61 (104)
T smart00512 4 IKLISSDGEVFEVEREVA-RQSKTIKAMIEDLGVDDENNNPIPLPNVTS-----KILSKVIEYC 61 (104)
T ss_pred EEEEeCCCCEEEecHHHH-HHHHHHHHHHHccCcccCCCCCccCCCcCH-----HHHHHHHHHH
Confidence 45544 789999999876 6889999999864 1 1225899999998 4455555443
No 35
>KOG3863|consensus
Probab=56.16 E-value=2.5 Score=44.19 Aligned_cols=41 Identities=29% Similarity=0.575 Sum_probs=35.3
Q ss_pred hhhHHHHhccCCcccEEEEecCeEEecchhhhhccCchhhhhhcCC
Q psy7972 193 QSMFSQLLERECFCDVTLACEGKHIRAHKVMLSACSTYFDAILSQH 238 (303)
Q Consensus 193 l~~L~~lr~~~~l~DVtl~v~g~~f~AHK~VLAa~S~yFramF~~~ 238 (303)
+..++..|+...+|||++.|+++.|+||+ ||+||.+-..+.
T Consensus 2 ~~~~~~qr~~~~~~~~~~~~~~~~f~~~~-----~~e~~~~~~~G~ 42 (604)
T KOG3863|consen 2 LLSLNDQRKKDVLCDVTAFVERQGFRAHR-----CSEYFTSRIVGQ 42 (604)
T ss_pred CccccccccccccchhHHHHhccccccee-----ccchhhhhhccc
Confidence 45678899999999999999999999999 999998765543
No 36
>KOG1987|consensus
Probab=52.26 E-value=5.7 Score=36.99 Aligned_cols=39 Identities=23% Similarity=0.373 Sum_probs=28.2
Q ss_pred CeEEecchhhhhccCchhhhhhcCC--CCCCCEEEecCccc
Q psy7972 214 GKHIRAHKVMLSACSTYFDAILSQH--DETNPIVVFKDVRV 252 (303)
Q Consensus 214 g~~f~AHK~VLAa~S~yFramF~~~--e~~~~~I~L~~vs~ 252 (303)
+..+.+|+++++++|+.|++|+... +.....+.+.+..+
T Consensus 109 ~g~~~~~~~~~~a~~~V~~~~~~~d~~~~~~~~~~~~d~~~ 149 (297)
T KOG1987|consen 109 NGFLVAHKLVLVARSEVFEAMGKSDVFKESSKLITLLEEKP 149 (297)
T ss_pred CcEEEcCceEEEeeecceeeecccccchhccccccccccch
Confidence 5669999999999999999999875 22333334444444
No 37
>COG3651 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=47.00 E-value=9.5 Score=31.34 Aligned_cols=26 Identities=23% Similarity=0.263 Sum_probs=16.7
Q ss_pred ccCCCCcccccccccceeeCCCcccC
Q psy7972 50 SNFNSNQDSYRSDKSDLIFPGTKWCG 75 (303)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~pGT~WCG 75 (303)
+++|-.+..+-......+-||.+||=
T Consensus 59 s~GNDLSt~rP~~~fpglkpgdrwcl 84 (125)
T COG3651 59 SRGNDLSTPRPPYWFPGLKPGDRWCL 84 (125)
T ss_pred hcCCCCCCCCCcccCCCCCCCCeeee
Confidence 34444555544445567899999995
No 38
>PF08036 Antimicrobial_6: Diapausin family of antimicrobial peptide; InterPro: IPR012525 This family consists of diapausin-related antimicrobial peptides. Diapause during periods of environmental adversity is an essential part of the life cycle of many organisms with the molecular basis being different among animals. Diapause-specific peptides provide anti-fungal activity and act as N-type voltage-gated calcium channel blocker [].; GO: 0050832 defense response to fungus, 0005576 extracellular region; PDB: 2E2F_A.
Probab=41.02 E-value=9.3 Score=25.58 Aligned_cols=12 Identities=50% Similarity=1.077 Sum_probs=9.5
Q ss_pred chhhhhcccccC
Q psy7972 90 VETDKCCRDHDH 101 (303)
Q Consensus 90 ~~tD~CCr~HD~ 101 (303)
.+-|.|||+|.+
T Consensus 15 ~Er~eCCrAhG~ 26 (39)
T PF08036_consen 15 PERDECCRAHGY 26 (39)
T ss_dssp TTTHHHHHHTT-
T ss_pred hhHHHHHHHcCc
Confidence 377999999986
No 39
>KOG2716|consensus
Probab=39.64 E-value=47 Score=30.89 Aligned_cols=55 Identities=20% Similarity=0.306 Sum_probs=39.4
Q ss_pred EEEEecCeEEecchhhhhccCchhhhhhcCC-CCC---CCEEEecCcccccccchHHHHHHhhhh
Q psy7972 208 VTLACEGKHIRAHKVMLSACSTYFDAILSQH-DET---NPIVVFKDVRVHCRCDKKFYDCLKTAA 268 (303)
Q Consensus 208 Vtl~v~g~~f~AHK~VLAa~S~yFramF~~~-e~~---~~~I~L~~vs~~ClcD~~f~~~L~~a~ 268 (303)
|.|-|||..|...|.-|.--..+|++|+... +.. ..-|-| |=+ +.-|.-+|.+.+
T Consensus 7 vkLnvGG~~F~Tsk~TLtk~dg~fk~m~e~~i~~~~d~s~~IFI-DRS-----pKHF~~ILNfmR 65 (230)
T KOG2716|consen 7 VKLNVGGTIFKTSKSTLTKFDGFFKTMLETDIPVEKDESGCIFI-DRS-----PKHFDTILNFMR 65 (230)
T ss_pred EEEecCCeEEEeehhhhhhhhhHHHHHhhcCCccccCCcCcEEe-cCC-----hhHHHHHHHhhh
Confidence 4578999999999999999999999999875 211 122332 222 356777777764
No 40
>KOG0511|consensus
Probab=29.75 E-value=16 Score=36.59 Aligned_cols=42 Identities=29% Similarity=0.475 Sum_probs=34.1
Q ss_pred HHHHhccCCc-ccEEEEecCeEEecchhhhhccCchhhhhhcC
Q psy7972 196 FSQLLERECF-CDVTLACEGKHIRAHKVMLSACSTYFDAILSQ 237 (303)
Q Consensus 196 L~~lr~~~~l-~DVtl~v~g~~f~AHK~VLAa~S~yFramF~~ 237 (303)
|-..|-+..+ -||.+-+.|++|-+||+++.+.|++|+-+|..
T Consensus 168 ll~arSs~~~~k~v~~~~~~heI~~~~v~~~~f~~flk~lyl~ 210 (516)
T KOG0511|consen 168 LLEARSSNYFPKDVMFYVQGHEIEAHRVILSAFSPFLKQLYLN 210 (516)
T ss_pred HHHhhhcccCchhhhhccccCchhhhhhhHhhhhHHHHHHHHh
Confidence 4444544443 57888899999999999999999999998876
Done!