RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy7972
(303 letters)
>gnl|CDD|153093 cd04704, PLA2_bee_venom_like, PLA2_bee_venom_like: A sub-family of
Phospholipase A2, similar to bee venom PLA2. PLA2 is a
super-family of secretory and cytosolic enzymes; the
latter are either Ca dependent or Ca independent.
Enzymatically active PLA2 cleaves the sn-2 position of
the glycerol backbone of phospholipids; secreted PLA2s
have also been found to specifically bind to a variety
of soluble and membrane proteins in mammals, including
receptors. As a toxin, PLA2 is a potent presynaptic
neurotoxin which blocks nerve terminals by binding to
the nerve membrane and hydrolyzing stable membrane
lipids. The products of the hydrolysis cannot form
bilayers leading to a change in membrane conformation
and ultimately to a block in the release of
neurotransmitters. PLA2 may form dimers or oligomers.
Bee venom PLA2 has fewer conserved disulfide bridges
than most canonical PLA2s.
Length = 97
Score = 144 bits (366), Expect = 7e-44
Identities = 53/100 (53%), Positives = 65/100 (65%), Gaps = 3/100 (3%)
Query: 66 LIFPGTKWCGAGDIATDYNDLGTNVETDKCCRDHDHCSEYILAKSSLHGLRNNAPFTRVH 125
I PGTKWCG G+IAT+Y+DLG ETDKCCR+HDHC + I A +GL N FTR H
Sbjct: 1 FIVPGTKWCGPGNIATNYSDLGAFRETDKCCREHDHCPDIISAGEYKYGLTNTRLFTRSH 60
Query: 126 CRCDKKFYDCLKTAADTGDQPSQMVGYMYFNLLETQCFQE 165
C CD +F CLK D+ S VG +YFN+L+ CF+
Sbjct: 61 CDCDNRFRQCLKNVNDST---SNQVGKIYFNVLQVPCFEL 97
Score = 51.5 bits (124), Expect = 1e-08
Identities = 19/43 (44%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Query: 251 RVHCRCDKKFYDCLKTAADTGDQPSQMVGYMYFNLLETQCFQE 293
R HC CD +F CLK D+ S VG +YFN+L+ CF+
Sbjct: 58 RSHCDCDNRFRQCLKNVNDST---SNQVGKIYFNVLQVPCFEL 97
>gnl|CDD|147789 pfam05826, Phospholip_A2_2, Phospholipase A2. This family consists
of several phospholipase A2 like proteins mostly from
insects.
Length = 99
Score = 129 bits (326), Expect = 7e-38
Identities = 49/97 (50%), Positives = 61/97 (62%), Gaps = 3/97 (3%)
Query: 67 IFPGTKWCGAGDIATDYNDLGTNVETDKCCRDHDHCSEYILAKSSLHGLRNNAPFTRVHC 126
I PGTKWCG G+IA DY DLG +TD+CCR HD+C + I + + +GL N PFT HC
Sbjct: 1 ITPGTKWCGTGNIAEDYGDLGEFDKTDRCCRTHDNCPDKIESGETKYGLTNFGPFTISHC 60
Query: 127 RCDKKFYDCLKTAADTGDQPSQMVGYMYFNLLETQCF 163
CD++F CLK T S VG YFN+L+ CF
Sbjct: 61 DCDQRFRRCLKN---TNTNKSGNVGKTYFNVLQVPCF 94
Score = 46.9 bits (112), Expect = 4e-07
Identities = 19/46 (41%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Query: 251 RVHCRCDKKFYDCLKTAADTGDQPSQMVGYMYFNLLETQCFQEDYP 296
HC CD++F CLK T S VG YFN+L+ CF P
Sbjct: 57 ISHCDCDQRFRRCLKN---TNTNKSGNVGKTYFNVLQVPCFHLIVP 99
>gnl|CDD|216043 pfam00651, BTB, BTB/POZ domain. The BTB (for BR-C, ttk and bab) or
POZ (for Pox virus and Zinc finger) domain is present
near the N-terminus of a fraction of zinc finger
(pfam00096) proteins and in proteins that contain the
pfam01344 motif such as Kelch and a family of pox virus
proteins. The BTB/POZ domain mediates homomeric
dimerisation and in some instances heteromeric
dimerisation. The structure of the dimerised PLZF
BTB/POZ domain has been solved and consists of a tightly
intertwined homodimer. The central scaffolding of the
protein is made up of a cluster of alpha-helices flanked
by short beta-sheets at both the top and bottom of the
molecule. POZ domains from several zinc finger proteins
have been shown to mediate transcriptional repression
and to interact with components of histone deacetylase
co-repressor complexes including N-CoR and SMRT. The POZ
or BTB domain is also known as BR-C/Ttk or ZiN.
Length = 101
Score = 64.6 bits (158), Expect = 2e-13
Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Query: 196 FSQLLERECFCDVTLACEGKHIRAHKVMLSACSTYFDAILSQHDETNPIVVFKDV 250
++L E CDVTL K AHK +L+ACS YF A+ + + E + +DV
Sbjct: 1 LNELRENGELCDVTLVVGDKEFHAHKAVLAACSPYFKALFTGNKEV--EITLEDV 53
>gnl|CDD|153092 cd00618, PLA2_like, PLA2_like: Phospholipase A2, a super-family of
secretory and cytosolic enzymes; the latter are either
Ca dependent or Ca independent. PLA2 cleaves the sn-2
position of the glycerol backbone of phospholipids (PC
or phosphatidylethanolamine), usually in a
metal-dependent reaction, to generate lysophospholipid
(LysoPL) and a free fatty acid (FA). The resulting
products are either dietary or used in synthetic
pathways for leukotrienes and prostaglandins. Often,
arachidonic acid is released as a free fatty acid and
acts as second messenger in signaling networks. Secreted
PLA2s have also been found to specifically bind to a
variety of soluble and membrane proteins in mammals,
including receptors. As a toxin, PLA2 is a potent
presynaptic neurotoxin which blocks nerve terminals by
binding to the nerve membrane and hydrolyzing stable
membrane lipids. The products of the hydrolysis (LysoPL
and FA) cannot form bilayers leading to a change in
membrane conformation and ultimately to a block in the
release of neurotransmitters. PLA2 may form dimers or
oligomers.
Length = 83
Score = 56.0 bits (135), Expect = 2e-10
Identities = 27/85 (31%), Positives = 33/85 (38%), Gaps = 15/85 (17%)
Query: 68 FPGTKWCGAGDIATDYNDLGTNVETDKCCRDHDHCSEYILAKSSLHG------------- 114
P +CG G A ETD+CCR HD C + I G
Sbjct: 1 LPYGCYCGPGGSACPSGQPVD--ETDRCCRKHDCCYDQISDGGCCDGCLSYSFSEGGVTC 58
Query: 115 LRNNAPFTRVHCRCDKKFYDCLKTA 139
L N+ TR HC CD++ CL A
Sbjct: 59 LTNSDLCTRSHCDCDRRLAICLARA 83
>gnl|CDD|197585 smart00225, BTB, Broad-Complex, Tramtrack and Bric a brac. Domain
in Broad-Complex, Tramtrack and Bric a brac. Also known
as POZ (poxvirus and zinc finger) domain. Known to be a
protein-protein interaction motif found at the N-termini
of several C2H2-type transcription factors as well as
Shaw-type potassium channels. Known structure reveals a
tightly intertwined dimer formed via interactions
between N-terminal strand and helix structures. However
in a subset of BTB/POZ domains, these two secondary
structures appear to be missing. Be aware SMART predicts
BTB/POZ domains without the beta1- and alpha1-secondary
structures.
Length = 97
Score = 49.6 bits (119), Expect = 5e-08
Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Query: 207 DVTLACEGKHIRAHKVMLSACSTYFDAILSQH--DETNPIVVFKDV 250
DVTL GK AHK +L+A S YF A+ S + + DV
Sbjct: 1 DVTLVVGGKKFHAHKAVLAAHSPYFKALFSSDFKESDKSEIYLDDV 46
>gnl|CDD|214508 smart00085, PA2c, Phospholipase A2.
Length = 117
Score = 45.7 bits (109), Expect = 2e-06
Identities = 25/119 (21%), Positives = 41/119 (34%), Gaps = 18/119 (15%)
Query: 63 KSDLIFPGTKWCGAGDIATDYNDLGTNV-ETDKCCRDHDHCSEYILAKSSLHGLRNNAPF 121
K + G C G + GT V TD+CC HD C K +
Sbjct: 15 KRAWLSYGDYGCYCGWGGS-----GTPVDATDRCCFVHDCCYGK-AEKEGCNP-----KT 63
Query: 122 TRVHCRCDKKFYDCLKTAADTGDQPSQMVGYMYFNLLETQCFQESADSSKHTNMESSQQ 180
T CD F C + +V + CF ++ + K+ N+++ ++
Sbjct: 64 TTYSYSCDNGFITCGG------KNTACLVFVCECDRAAAICFAKNPYNKKNYNIDTKKR 116
>gnl|CDD|153094 cd04705, PLA2_group_III_like, PLA2_group_III_like: A sub-family of
Phospholipase A2, similar to human group III PLA2. PLA2
is a super-family of secretory and cytosolic enzymes;
the latter are either Ca dependent or Ca independent.
Enzymatically active PLA2 cleaves the sn-2 position of
the glycerol backbone of phospholipids; secreted PLA2s
have also been found to specifically bind to a variety
of soluble and membrane proteins in mammals, including
receptors. As a toxin, PLA2 is a potent presynaptic
neurotoxin which blocks nerve terminals by binding to
the nerve membrane and hydrolyzing stable membrane
lipids. The products of the hydrolysis cannot form
bilayers leading to a change in membrane conformation
and ultimately to a block in the release of
neurotransmitters. PLA2 may form dimers or oligomers.
Length = 100
Score = 44.1 bits (104), Expect = 6e-06
Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
Query: 87 GTNVETDKCCRDHDHCSEYILAKSSLHGLRNNAPFTRVHCRCDKKFYDCLKTAAD--TGD 144
G E D+CC H C +I+ S G N + HC CD + DCL+ ++ G
Sbjct: 29 GEFKEPDRCCWKHKQCPGHIIPPFSSDGHHNFHLHSVSHCDCDSRLKDCLRLSSSSRVGP 88
Query: 145 QPSQMVGYMYFN 156
S ++G FN
Sbjct: 89 TCSHLLGTTCFN 100
>gnl|CDD|165086 PHA02713, PHA02713, hypothetical protein; Provisional.
Length = 557
Score = 36.5 bits (84), Expect = 0.016
Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 188 HHSNLQSMFSQLLERECFCDVTLAC-EGKHIRAHKVMLSACSTYFDAILS 236
H+ + S S LL+ + CDV + +G+ I+AHK +L+A S YF + +
Sbjct: 8 HNRRVVSNISNLLDDDILCDVIITIGDGEEIKAHKTILAAGSKYFRTLFT 57
>gnl|CDD|222983 PHA03098, PHA03098, kelch-like protein; Provisional.
Length = 534
Score = 34.0 bits (78), Expect = 0.086
Identities = 16/61 (26%), Positives = 29/61 (47%)
Query: 195 MFSQLLERECFCDVTLACEGKHIRAHKVMLSACSTYFDAILSQHDETNPIVVFKDVRVHC 254
M+S L++ C + + G I+ HK++LS+ S YF + + + N I + D
Sbjct: 1 MYSFELQKFCDESIIIVNGGGIIKVHKIILSSSSEYFKKMFKNNFKENEINLNIDYDSFN 60
Query: 255 R 255
Sbjct: 61 E 61
>gnl|CDD|153095 cd04706, PLA2_plant, PLA2_plant: Plant-specific sub-family of
Phospholipase A2, a super-family of secretory and
cytosolic enzymes; the latter are either Ca dependent or
Ca independent. Enzymatically active PLA2 cleaves the
sn-2 position of the glycerol backbone of phospholipids;
secreted PLA2s have also been found to specifically bind
to a variety of soluble and membrane proteins in
mammals, including receptors. As a toxin, PLA2 is a
potent presynaptic neurotoxin which blocks nerve
terminals by binding to the nerve membrane and
hydrolyzing stable membrane lipids. The products of the
hydrolysis cannot form bilayers leading to a change in
membrane conformation and ultimately to a block in the
release of neurotransmitters. PLA2 may form dimers or
oligomers. This sub-family does not appear to have a
conserved active site and metal-binding loop.
Length = 117
Score = 30.9 bits (70), Expect = 0.29
Identities = 11/60 (18%), Positives = 20/60 (33%), Gaps = 17/60 (28%)
Query: 93 DKCCRDHDHCSEYILAKSSLHGLRNNAPFTRVHCRCDKKFYDCLKTAADTGDQPSQMVGY 152
D CC HD C K+ + C++KF +C++ + +
Sbjct: 45 DACCMTHDAC--VQAKKNDY-----------LSLECNEKFKNCVR----RFRKARKPTFE 87
>gnl|CDD|217218 pfam02765, Telo_bind, Telomeric single stranded DNA binding
POT1/CDC13. This domain binds single stranded telomeric
DNA and adopts an OB fold. It includes the proteins POT1
and CDC13 which have been shown to regulate telomere
length, replication and capping.
Length = 141
Score = 30.1 bits (68), Expect = 0.66
Identities = 14/59 (23%), Positives = 20/59 (33%), Gaps = 3/59 (5%)
Query: 232 DAILSQHDETNPIVVFKDVRVHCRCDKKFYDCLKTAAD---TGDQPSQMVGYMYFNLLE 287
A+L N I V D + + YD T D GD + ++ N E
Sbjct: 6 IALLKSGVVVNVIGVVVDAKFPYKTRGSDYDFTLTIVDETNKGDSNDGLTVKLFSNNFE 64
>gnl|CDD|227554 COG5229, LOC7, Chromosome condensation complex Condensin, subunit H
[Chromatin structure and dynamics / Cell division and
chromosome partitioning].
Length = 662
Score = 29.8 bits (66), Expect = 2.1
Identities = 14/51 (27%), Positives = 20/51 (39%), Gaps = 2/51 (3%)
Query: 24 FDQSYYKN--AYNHNKYNYLKGNNNNKYSNFNSNQDSYRSDKSDLIFPGTK 72
FD SY+KN H K K N + + + +DK+D T
Sbjct: 345 FDFSYFKNWAGPEHWKVQAKKKRVNKESDLLEETRTTITTDKTDDKSMDTS 395
>gnl|CDD|182765 PRK10834, PRK10834, vancomycin high temperature exclusion protein;
Provisional.
Length = 239
Score = 28.9 bits (65), Expect = 2.7
Identities = 18/53 (33%), Positives = 23/53 (43%), Gaps = 7/53 (13%)
Query: 31 NAYNHNKYNYLKGNNNNKYSNFNSNQDSYRSDKSDLIFPGTKWCGAGDIATDY 83
NAYN K NYL + +N ++N + DLI G DI DY
Sbjct: 75 NAYNSGKVNYLLLSGDNALQSYNEPMTMRK----DLIAAGVD---PSDIVLDY 120
>gnl|CDD|173762 cd08222, STKc_Nek11, Catalytic domain of the Protein
Serine/Threonine Kinase, Never In Mitosis gene A-related
kinase 11. Serine/Threonine Kinases (STKs), Never In
Mitosis gene A (NIMA)-related kinase 11 (Nek11)
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
Nek11 subfamily is one of a family of 11 different Neks
(Nek1-11) that are involved in cell cycle control. The
Nek family is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. Nek11 is involved, through direct
phosphorylation, in regulating the degradation of Cdc25A
(Cell Division Cycle 25 homolog A), which plays a role
in cell cycle progression and in activating cyclin
dependent kinases. Nek11 is activated by CHK1
(CHeckpoint Kinase 1) and may be involved in the G2/M
checkpoint. Nek11 may also play a role in the S-phase
checkpoint as well as in DNA replication and genotoxic
stress responses.
Length = 260
Score = 28.7 bits (64), Expect = 3.4
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 4/44 (9%)
Query: 172 HTNMESSQQYCLRWKYHHSNLQSMFSQLLERECFCDVTLACEGK 215
N E+ L K H + + LER+ FC +T CEG+
Sbjct: 48 QANQEAQ----LLSKLDHPAIVKFHASFLERDAFCIITEYCEGR 87
>gnl|CDD|240273 PTZ00110, PTZ00110, helicase; Provisional.
Length = 545
Score = 29.0 bits (65), Expect = 3.9
Identities = 11/38 (28%), Positives = 17/38 (44%), Gaps = 4/38 (10%)
Query: 26 QSYYKNAYNHNKYNYLKGNNNNKYSNFNSNQDSYRSDK 63
Q+ +++ Y + Y GN + Y F N SY S
Sbjct: 38 QANHQDNYGGFRPGY--GNYSGGYGGFGMN--SYGSST 71
>gnl|CDD|176386 cd01791, Ubl5, UBL5 ubiquitin-like modifier. UBL5 (also known as
HUB1) is a ubiquitin-like modifier that is both widely
expressed and highly phylogenetically conserved. At the
C-terminal end of the ubiquitin-like fold of UBL5 is a
di-tyrosine motif followed by a single variable residue
instead of the characteristic di-glycine found in all
other ubiquitin-like modifiers. ULB5 interacts with a
cyclin-like kinase called CLK4 but not with other
cyclin-like kinase family members.
Length = 73
Score = 26.7 bits (59), Expect = 4.2
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Query: 248 KDVRVHCRCDKKFYDCLK-TAADTGDQPSQMVGYMYFNLLETQCFQEDYPI 297
K VRV C D D K AA TG +P ++V ++ + + DY I
Sbjct: 12 KKVRVKCNPDDTIGDLKKLIAAQTGTRPEKIVLKKWYTIFKDHISLGDYEI 62
>gnl|CDD|215225 PLN02401, PLN02401, diacylglycerol o-acyltransferase.
Length = 446
Score = 28.6 bits (64), Expect = 5.0
Identities = 22/96 (22%), Positives = 36/96 (37%), Gaps = 9/96 (9%)
Query: 208 VTLACEGKHIRAHKVMLSACSTYFDAILSQHDETNPIVVFKDVRVHCRCDKKFYDCLKTA 267
V L C+ + +ML AC + + H TN D+R + K +A
Sbjct: 146 VILRCDSAVLSGVTLMLLACIVWLKLVSYAH--TN-----YDMRALAKSIDKGEAPSTSA 198
Query: 268 -ADTGDQPSQMVGYMYFNLLETQCFQEDYPITNCTK 302
+ + YF + T C+Q YP + C +
Sbjct: 199 NPEVSYDVT-FKSLAYFMVAPTLCYQPSYPRSACIR 233
>gnl|CDD|185139 PRK15217, PRK15217, fimbrial outer membrane usher protein;
Provisional.
Length = 826
Score = 28.6 bits (64), Expect = 5.1
Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 6/36 (16%)
Query: 21 VRSFDQSYYKNAYNHNKYNYLKGNNNNK--YSNFNS 54
+ +F SYY + Y Y+ K + N+K Y FNS
Sbjct: 151 INAFYTSYYASQY----YSDYKASGNSKSTYVRFNS 182
>gnl|CDD|211578 TIGR00497, hsdM, type I restriction system adenine methylase
(hsdM). Function: methylation of specific adenine
residues; required for both restriction and modification
activities. The ECOR124/3 I enzyme recognizes
5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257:
960-969 (1996)) [DNA metabolism,
Restriction/modification].
Length = 501
Score = 27.6 bits (61), Expect = 9.1
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Query: 10 SVLLIFVFISSVRSFDQSYYKNAYNHNKYNYLKGN---NNNKYSNFN 53
S+LL + + ++ SYY NH YN + N +N Y+NFN
Sbjct: 230 SLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNIDYANFN 276
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.134 0.425
Gapped
Lambda K H
0.267 0.0732 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 14,143,245
Number of extensions: 1221790
Number of successful extensions: 1017
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1001
Number of HSP's successfully gapped: 37
Length of query: 303
Length of database: 10,937,602
Length adjustment: 96
Effective length of query: 207
Effective length of database: 6,679,618
Effective search space: 1382680926
Effective search space used: 1382680926
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (26.5 bits)