RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7972
(303 letters)
>1poc_A Phospholipase A2; hydrolase; HET: GEL; 2.00A {Apis mellifera} SCOP:
a.133.1.1
Length = 134
Score = 125 bits (314), Expect = 5e-36
Identities = 55/125 (44%), Positives = 74/125 (59%), Gaps = 4/125 (3%)
Query: 66 LIFPGTKWCGAGDIATDYNDLGTNVETDKCCRDHDHCSEYILAKSSLHGLRNNAPFTRVH 125
+I+PGT WCG G+ ++ N+LG TD CCR HD C + + A S HGL N A TR+
Sbjct: 1 IIYPGTLWCGHGNKSSGPNELGRFKHTDACCRTHDMCPDVMSAGESKHGLTNTASHTRLS 60
Query: 126 CRCDKKFYDCLKTAADTGDQPSQMVGYMYFNLLETQCFQESADSSKHTNMESSQQYCLRW 185
C CD KFYDCLK +ADT S VG MYFNL++T+C++ + E ++ CL +
Sbjct: 61 CDCDDKFYDCLKNSADTI--SSYFVGKMYFNLIDTKCYKL--EHPVTGCGERTEGRCLHY 116
Query: 186 KYHHS 190
S
Sbjct: 117 TVDKS 121
Score = 55.8 bits (134), Expect = 5e-10
Identities = 27/53 (50%), Positives = 38/53 (71%), Gaps = 2/53 (3%)
Query: 251 RVHCRCDKKFYDCLKTAADTGDQPSQMVGYMYFNLLETQCFQEDYPITNCTKY 303
R+ C CD KFYDCLK +ADT S VG MYFNL++T+C++ ++P+T C +
Sbjct: 58 RLSCDCDDKFYDCLKNSADTI--SSYFVGKMYFNLIDTKCYKLEHPVTGCGER 108
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond,
activator, DNA-binding, nucleus, phosphorylation,
repressor; 2.50A {Mus musculus}
Length = 138
Score = 68.5 bits (168), Expect = 2e-14
Identities = 20/75 (26%), Positives = 38/75 (50%)
Query: 172 HTNMESSQQYCLRWKYHHSNLQSMFSQLLERECFCDVTLACEGKHIRAHKVMLSACSTYF 231
H ++ S + H +N+ + +++ CDVT+ EG+ RAH+ +L+ACS+YF
Sbjct: 3 HMSVSESAVFAYESSVHSTNVLLSLNDQRKKDVLCDVTVLVEGQRFRAHRSVLAACSSYF 62
Query: 232 DAILSQHDETNPIVV 246
+ + + V
Sbjct: 63 HSRIVGQTDAELTVT 77
>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain
containing 33, kaiso transcriptio ZNF-kaiso,
ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB:
3m4t_A 3m8v_A
Length = 116
Score = 66.5 bits (163), Expect = 4e-14
Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 3/76 (3%)
Query: 175 MESSQQYCLRWKYHHSNLQSMFSQLLERECFCDVTLACEGKHIRAHKVMLSACSTYFDAI 234
MES + + +L + ++ FCDVT+ E + RAHK +LSA STYF +
Sbjct: 1 MESRKLISATDIQYSGSLLNSLNEQRGHGLFCDVTVIVEDRKFRAHKNILSASSTYFHQL 60
Query: 235 LSQHDETNPIVVFKDV 250
S + V +
Sbjct: 61 FSVAGQV---VELSFI 73
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo
sapiens} PDB: 3ohv_A
Length = 125
Score = 66.5 bits (163), Expect = 6e-14
Identities = 22/70 (31%), Positives = 34/70 (48%)
Query: 177 SSQQYCLRWKYHHSNLQSMFSQLLERECFCDVTLACEGKHIRAHKVMLSACSTYFDAILS 236
S Y H +N+ + +++ CDVTL E K RAH+ +L+ACS YF L
Sbjct: 4 GSPMYVYESTVHCTNILLGLNDQRKKDILCDVTLIVERKEFRAHRAVLAACSEYFWQALV 63
Query: 237 QHDETNPIVV 246
+ + +V
Sbjct: 64 GQTKNDLVVS 73
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC
domain,transcription factor, protein-PROT interaction;
2.44A {Homo sapiens}
Length = 124
Score = 65.3 bits (160), Expect = 1e-13
Identities = 18/70 (25%), Positives = 35/70 (50%)
Query: 177 SSQQYCLRWKYHHSNLQSMFSQLLERECFCDVTLACEGKHIRAHKVMLSACSTYFDAILS 236
S + H +N+ + +++ CDVT+ EG+ RAH+ +L+ACS+YF + +
Sbjct: 1 SMSVFAYESSVHSTNVLLSLNDQRKKDVLCDVTIFVEGQRFRAHRSVLAACSSYFHSRIV 60
Query: 237 QHDETNPIVV 246
+ +
Sbjct: 61 GQADGELNIT 70
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression,
transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB:
1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A
Length = 127
Score = 64.5 bits (158), Expect = 3e-13
Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Query: 178 SQQYCLRWKYHHSNLQSMFSQLLERECFCDVTLACEGKHIRAHKVMLSACSTYFDAIL-S 236
S +++ H S++ ++L R+ DV + + RAHK +L ACS F +I
Sbjct: 2 SADSQIQFTRHASDVLLNLNRLRSRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTD 61
Query: 237 QHDETNPIVV 246
Q ++
Sbjct: 62 QLKRNLSVIN 71
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain,
phosphoprotein, repressor, transcri transcription
regulation; 2.10A {Homo sapiens}
Length = 129
Score = 63.8 bits (156), Expect = 6e-13
Identities = 14/76 (18%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
Query: 175 MESSQQYCLRWKYHHSNLQSMFSQLLERECFCDVTLACEGKHIRAHKVMLSACSTYFDAI 234
+ S+Q + +++ ++ + +CDV++ +G +AH+ +L+A S+YF +
Sbjct: 3 LGSAQTLQMEIPNFGNSILECLNEQRLQGLYCDVSVVVKGHAFKAHRAVLAASSSYFRDL 62
Query: 235 LSQHDETNPIVVFKDV 250
+ + + + + V
Sbjct: 63 FN-NSRSAVVELPAAV 77
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding,
alternative splicing, zinc, nucleus, BTB domain,
zinc-finger, DNA-binding; 2.00A {Homo sapiens}
Length = 116
Score = 63.0 bits (154), Expect = 8e-13
Identities = 17/63 (26%), Positives = 27/63 (42%)
Query: 188 HHSNLQSMFSQLLERECFCDVTLACEGKHIRAHKVMLSACSTYFDAILSQHDETNPIVVF 247
H +L ++ E CD T+ +AH+ +L++ S YF AI E N +
Sbjct: 5 HCEHLLERLNKQREAGFLCDCTIVIGEFQFKAHRNVLASFSEYFGAIYRSTSENNVFLDQ 64
Query: 248 KDV 250
V
Sbjct: 65 SQV 67
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics,
struct genomics consortium, SGC, structural protein;
2.40A {Homo sapiens}
Length = 144
Score = 63.5 bits (155), Expect = 1e-12
Identities = 20/91 (21%), Positives = 33/91 (36%), Gaps = 4/91 (4%)
Query: 164 QESADSSKHTNMESSQQYCLRWKYHHSNLQSMFSQLLERECFCDVTLACEGKHIRAHKVM 223
S+ T Q + H + L S E FCD L +G+ I K +
Sbjct: 6 HHSSGVDLGTENLYFQSMAVSDPQHAARLLRALSSFREESRFCDAHLVLDGEEIPVQKNI 65
Query: 224 LSACSTYFDAILSQ---HDETNP-IVVFKDV 250
L+A S Y L+ D+ + + + +
Sbjct: 66 LAAASPYIRTKLNYNPPKDDGSTYKIELEGI 96
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK,
proto oncogene, transcription F transcription; 2.00A
{Homo sapiens} PDB: 2nn2_A
Length = 120
Score = 62.2 bits (152), Expect = 2e-12
Identities = 16/71 (22%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
Query: 182 CLRWKYHHSNLQSMFSQLLERECFCDVTLACEGKHIRAHKVMLSACSTYFDAILSQH--D 239
+ + H S++ S ++ + CDV + EG+ H+ +L+ACS YF + +
Sbjct: 2 GIPFPDHSSDILSGLNEQRTQGLLCDVVILVEGREFPTHRSVLAACSQYFKKLFTSGAVV 61
Query: 240 ETNPIVVFKDV 250
+ + V
Sbjct: 62 DQQNVYEIDFV 72
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo
sapiens} PDB: 3m52_A
Length = 119
Score = 61.1 bits (149), Expect = 4e-12
Identities = 16/54 (29%), Positives = 26/54 (48%)
Query: 188 HHSNLQSMFSQLLERECFCDVTLACEGKHIRAHKVMLSACSTYFDAILSQHDET 241
H ++ +Q + CD T +G H +AHK +L+ACS YF + +
Sbjct: 10 HSQHVLEQLNQQRQLGLLCDCTFVVDGVHFKAHKAVLAACSEYFKMLFVDQKDV 63
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein
binding; 2.40A {Homo sapiens}
Length = 145
Score = 61.4 bits (150), Expect = 5e-12
Identities = 19/64 (29%), Positives = 26/64 (40%), Gaps = 2/64 (3%)
Query: 190 SNLQSMFSQLLERECFCDVTLACEGKHIRAHKVMLSACSTYFDAIL-SQHDE-TNPIVVF 247
L L E F D L G+ +AHK +L+A S F A+ + +E V
Sbjct: 10 CRLADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEI 69
Query: 248 KDVR 251
DV
Sbjct: 70 NDVE 73
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related
zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene;
1.74A {Homo sapiens}
Length = 119
Score = 59.5 bits (145), Expect = 2e-11
Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
Query: 188 HHSNLQSMFSQLLERECFCDVTLACEGKHIRAHKVMLSACSTYFDAILSQHDETNPIVVF 247
H + ++ E+ +CD TL G +AH +L+ CS +F ++ + VV
Sbjct: 7 HSVRVLQELNKQREKGQYCDATLDVGGLVFKAHWSVLACCSHFFQSLYGDGSGGS--VVL 64
Query: 248 KDV 250
Sbjct: 65 PAG 67
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus,
UBL conjugation pathway, protein binding; 2.50A {Homo
sapiens}
Length = 172
Score = 60.7 bits (148), Expect = 2e-11
Identities = 18/64 (28%), Positives = 24/64 (37%), Gaps = 2/64 (3%)
Query: 190 SNLQSMFSQLLERECFCDVTLACEGKHIRAHKVMLSACSTYFDAILSQH--DETNPIVVF 247
L L E F D L G+ +AHK +L+A S F A+ + V
Sbjct: 19 CRLADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEI 78
Query: 248 KDVR 251
DV
Sbjct: 79 NDVE 82
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote;
protein-protein interaction domain, transcriptional
represso finger protein; 1.90A {Homo sapiens} SCOP:
d.42.1.1 PDB: 1cs3_A
Length = 121
Score = 59.2 bits (144), Expect = 2e-11
Identities = 11/51 (21%), Positives = 24/51 (47%)
Query: 188 HHSNLQSMFSQLLERECFCDVTLACEGKHIRAHKVMLSACSTYFDAILSQH 238
H + L +Q+ CDV + + + AH+ +L+ S F+ + ++
Sbjct: 11 HPTGLLCKANQMRLAGTLCDVVIMVDSQEFHAHRTVLACTSKMFEILFHRN 61
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation,
kelch repeat, neurodegeneration, phosphoprotein,
polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB:
3hve_B
Length = 256
Score = 61.5 bits (150), Expect = 3e-11
Identities = 18/81 (22%), Positives = 30/81 (37%), Gaps = 6/81 (7%)
Query: 174 NMESSQQYCLRWKYHHSNLQSMFSQLLERECFCDVTLACEGKHIRAHKVMLSACSTYFDA 233
+M H + L S E FCD L +G+ I K +L+A S Y
Sbjct: 2 SMAEGSAVSDPQ--HAARLLRALSSFREESRFCDAHLVLDGEEIPVQKNILAAASPYIRT 59
Query: 234 ILS---QHDETN-PIVVFKDV 250
L+ D+ + + + +
Sbjct: 60 KLNYNPPKDDGSTYKIELEGI 80
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3,
structural genomics, NPPSFA; 2.60A {Mus musculus}
Length = 135
Score = 58.8 bits (143), Expect = 4e-11
Identities = 14/49 (28%), Positives = 23/49 (46%)
Query: 188 HHSNLQSMFSQLLERECFCDVTLACEGKHIRAHKVMLSACSTYFDAILS 236
H + ++ E+ +CD TL G +AH +L+ CS +F I
Sbjct: 8 HSVRVLQELNKQREKGQYCDATLDVGGLVFKAHWSVLACCSHFFQRIYG 56
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain,
BTB/POZ domain, ZBTB32, zinc finger domain-containing
protein 32; 2.00A {Homo sapiens}
Length = 119
Score = 57.3 bits (139), Expect = 1e-10
Identities = 8/46 (17%), Positives = 16/46 (34%), Gaps = 1/46 (2%)
Query: 188 HHSNLQSMFSQLLERECFCDVTLACEGKHIRAHKVMLSACSTYFDA 233
+ S+ + L CD + + AH ++L+ S
Sbjct: 14 YGSDRLVQLAARLRPA-LCDTLITVGSQEFPAHSLVLAGVSQQLGR 58
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL
conjugation pathway, protein binding, ligase; 2.62A
{Homo sapiens} PDB: 3hu6_A
Length = 312
Score = 57.6 bits (139), Expect = 1e-09
Identities = 21/83 (25%), Positives = 29/83 (34%), Gaps = 2/83 (2%)
Query: 171 KHTNMESSQQYCLRWKYHHSNLQSMFSQLLERECFCDVTLACEGKHIRAHKVMLSACSTY 230
+ + S Q K L L E F D L G+ +AHK +L+A S
Sbjct: 140 QDSVNISGQNTMNMVKVPECRLADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPV 199
Query: 231 FDAILSQH--DETNPIVVFKDVR 251
F A+ + V DV
Sbjct: 200 FSAMFEHEMEESKKNRVEINDVE 222
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC,
structural genomics consortium, kelch repeat, secreted,
protein binding; 2.60A {Homo sapiens}
Length = 279
Score = 56.9 bits (138), Expect = 1e-09
Identities = 21/80 (26%), Positives = 35/80 (43%), Gaps = 5/80 (6%)
Query: 176 ESSQQYCLRWKYHHSNLQSMFSQLLERECFCDVTLAC---EGKHIRAHKVMLSACSTYFD 232
+S + H S L ++ + FCD+TL G+ RAH+ +L+A + YF
Sbjct: 3 QSMEAEDFECSSHCSELSWRQNEQRRQGLFCDITLCFGGAGGREFRAHRSVLAAATEYFT 62
Query: 233 AIL-SQHDETN-PIVVFKDV 250
+L Q E+ V +
Sbjct: 63 PLLSGQFSESRSGRVEMRKW 82
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo
sapiens}
Length = 109
Score = 53.7 bits (130), Expect = 2e-09
Identities = 13/57 (22%), Positives = 21/57 (36%), Gaps = 5/57 (8%)
Query: 199 LLERECFCDVTL----ACEGKHIRAHKVMLSACSTYFDAIL-SQHDETNPIVVFKDV 250
+ E DV + + AHK +L+ S+ F A+ E + DV
Sbjct: 2 MFNNELMADVHFVVGPPGATRTVPAHKYVLAVGSSVFYAMFYGDLAEVKSEIHIPDV 58
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 36.0 bits (82), Expect = 0.015
Identities = 21/116 (18%), Positives = 40/116 (34%), Gaps = 18/116 (15%)
Query: 27 SYYKNAYNHNKYNYLKGNNNNKYSNFNSNQDSYRSDKSDLIFPGTKWCGAGDIATDYNDL 86
Y+ Y+H ++ + + + F +R + + T W +G I L
Sbjct: 471 QYF---YSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQL 527
Query: 87 GTNVETDKCCRDH--DHCSEY-ILAKSSLHGLRNNAPFTRVHCRCDKKFYDCLKTA 139
K + + D+ +Y L + L L + C K+ D L+ A
Sbjct: 528 -------KFYKPYICDNDPKYERLVNAILDFLPKIEE----NLICS-KYTDLLRIA 571
>2wg7_A PLA2, putative phospholipase A2; hydrolase, secretory PLA2; 2.00A
{Oryza sativa} PDB: 2wg9_A* 2wg8_B 2wg8_A
Length = 130
Score = 29.8 bits (66), Expect = 0.56
Identities = 12/66 (18%), Positives = 20/66 (30%), Gaps = 15/66 (22%)
Query: 72 KWCGAGDIATDYNDLGTNVETDKCCRDHDHCSEYILAKSSLHGLRNNAPFTRVHCRCDKK 131
K+CG + D CC HDHC + ++ C++
Sbjct: 38 KYCGILY--SGCPGERPCDALDACCMVHDHCVDT-------------HNDDYLNTMCNEN 82
Query: 132 FYDCLK 137
C+
Sbjct: 83 LLSCID 88
>3ap1_A Protein-tyrosine sulfotransferase 2; sulfotransferase fold,
transferase; HET: A3P; 1.90A {Homo sapiens} PDB:
3ap2_A* 3ap3_A*
Length = 337
Score = 30.2 bits (68), Expect = 0.87
Identities = 8/47 (17%), Positives = 15/47 (31%), Gaps = 1/47 (2%)
Query: 23 SFDQSYYKNAYNHNKYNYLKGNNNNKYSNFNSNQDSYRSDKS-DLIF 68
S ++ + + + +N YR K+ LIF
Sbjct: 4 SHHHHHHSSGVPRGSHMGAMRPEQEELVMVGTNHVEYRYGKAMPLIF 50
>1oz6_A Phospholipase A2; enzyme, PLA2, hydrolase; 2.60A {Echis carinatus}
SCOP: a.133.1.2
Length = 120
Score = 28.1 bits (62), Expect = 1.8
Identities = 17/82 (20%), Positives = 24/82 (29%), Gaps = 18/82 (21%)
Query: 73 WCGAGDIATDYNDLGTNVETDKCCRDHDHCSE-----YILAKSSLHGLRNNAPF------ 121
+CG G + D+CC HD C + N
Sbjct: 27 YCGWGGQGPPKDAT------DRCCLVHDCCYTRVGDCSPKMTLYSYRFENGDIICDNKDP 80
Query: 122 -TRVHCRCDKKFYDCLKTAADT 142
R C CD++ CL +T
Sbjct: 81 CKRAVCECDREAAICLGENVNT 102
>3sqg_C Methyl-coenzyme M reductase, gamma subunit; anaerobic methane
oxidation, transferase; HET: MHS 0AF TP7 M43 1PE PGE
P6G; 2.10A {Uncultured archaeon}
Length = 279
Score = 29.1 bits (65), Expect = 1.8
Identities = 10/61 (16%), Positives = 21/61 (34%), Gaps = 1/61 (1%)
Query: 190 SNLQSMFSQLLERECFCDVTLACEGKHIRAHKVMLSACSTYFDAILSQ-HDETNPIVVFK 248
+++ + ++ E + G+ + H V L FDA+ + K
Sbjct: 128 RDIEKIAKIEVDCELYDTARTGLRGRTVHGHAVRLDKDGMMFDALRRWSRGADGTVTYVK 187
Query: 249 D 249
D
Sbjct: 188 D 188
>1jia_A Phospholipase A2; agkistrodon haLys pallas; 2.13A {Gloydius halys}
SCOP: a.133.1.2 PDB: 1b4w_A 1c1j_A*
Length = 122
Score = 26.9 bits (59), Expect = 4.1
Identities = 15/67 (22%), Positives = 21/67 (31%), Gaps = 12/67 (17%)
Query: 91 ETDKCCRDHDHCSEYILAKSSLHGLRN------------NAPFTRVHCRCDKKFYDCLKT 138
TD+CC HD C E + + P + C CDK C +
Sbjct: 39 ATDRCCFVHDCCYEKVTGCDPKWDDYTYSWKNGTIVCGGDDPCKKEVCECDKAAAICFRD 98
Query: 139 AADTGDQ 145
T +
Sbjct: 99 NLKTYKK 105
>2aoz_A Myotoxin II, phospholipase A2 homolog; X-RAY diffration,
myotoxicity, atropoides toxin; 2.08A {Atropoides
nummifer}
Length = 121
Score = 26.9 bits (59), Expect = 4.5
Identities = 19/88 (21%), Positives = 29/88 (32%), Gaps = 19/88 (21%)
Query: 91 ETDKCCRDHDHCSEYILAKSSLHGLRN------------NAPFTRVHCRCDKKFYDCLKT 138
TD+CC H C + + S + N P + C CDK CL+
Sbjct: 39 ATDRCCFVHKCCYKALTDCSPKTDSYSYSWKDKTIVCGKNNPCLKQECECDKAVAICLRD 98
Query: 139 AADTGDQPSQMVGYMYFNLLETQCFQES 166
DT ++ Y + C +
Sbjct: 99 NLDTYNKN-------YKIYPKPLCKKAD 119
>1mc2_A Acutohaemonlysin, phospholipase A2; YS49-phospholipase A2, snake
venom, toxin; 0.85A {Deinagkistrodon acutus} SCOP:
a.133.1.2 PDB: 1mg6_A 1pa0_A 3i03_A* 3hzd_A 3hzw_A*
3cxi_A* 3i3h_A 3i3i_A 1pc9_A 2q2j_A 3cyl_A* 1qll_A*
1xxs_A* 3qnl_A* 2ok9_A* 3iq3_A* 2h8i_A* 3mlm_A* 1y4l_A*
1clp_A* ...
Length = 122
Score = 26.9 bits (59), Expect = 4.8
Identities = 18/64 (28%), Positives = 23/64 (35%), Gaps = 12/64 (18%)
Query: 91 ETDKCCRDHDHCSEYILAKSSLHGL------------RNNAPFTRVHCRCDKKFYDCLKT 138
TD+CC H C + + S N P + C CDK F CL+
Sbjct: 39 ATDRCCFVHKCCYKKLTDCDSKKDRYSYKWKNKAIVCGKNQPCMQEMCECDKAFAICLRE 98
Query: 139 AADT 142
DT
Sbjct: 99 NLDT 102
>1zlb_A Hypotensive phospholipase A2; Asp49-PLA2, toxin, snake venom,
hydrolase; 0.97A {Bothrops jararacussu} SCOP: a.133.1.2
PDB: 1umv_X 1zl7_A 1z76_A* 1u73_A* 1vap_A 3r0l_A
Length = 122
Score = 26.6 bits (58), Expect = 5.1
Identities = 17/82 (20%), Positives = 25/82 (30%), Gaps = 18/82 (21%)
Query: 73 WCGAGDIATDYNDLGTNVETDKCCRDHDHCSEYILAKSSLHGLR------------NNAP 120
+CG G TD+CC HD C + + + P
Sbjct: 27 YCGLG------GQGQPTDATDRCCFVHDCCYGKVTGCNPKIDSYTYSKKNGDVVCGGDNP 80
Query: 121 FTRVHCRCDKKFYDCLKTAADT 142
+ C CD+ C + DT
Sbjct: 81 CKKQICECDRVATTCFRDNKDT 102
>1g0z_A Phospholipase A2; toxin; 2.18A {Bungarus caeruleus} SCOP: a.133.1.2
PDB: 1u4j_A* 1g2x_A 2osn_A 1dpy_A 1fe5_A 1tc8_A* 1po8_A*
Length = 118
Score = 26.4 bits (58), Expect = 5.8
Identities = 20/83 (24%), Positives = 28/83 (33%), Gaps = 22/83 (26%)
Query: 73 WCGAGDIATDYNDLGTNVETDKCCRDHDHCSEYILAKSSLHGLRNNAPFT---------- 122
+CG G T ++L D+CC HDHC + L +T
Sbjct: 26 YCGYGGSGTPVDEL------DRCCYTHDHCYNKAANIPGCNPLIKTYSYTCTKPNITCND 79
Query: 123 ------RVHCRCDKKFYDCLKTA 139
R C CD+ C +A
Sbjct: 80 TSDSCARFICDCDRTAAICFASA 102
>3k1d_A 1,4-alpha-glucan-branching enzyme; mycobacterium tuberculosis
H37RV, mesophilic human pathogen, RV1326C gene, glycosyl
transferase; 2.33A {Mycobacterium tuberculosis}
Length = 722
Score = 27.2 bits (61), Expect = 9.3
Identities = 10/45 (22%), Positives = 17/45 (37%), Gaps = 2/45 (4%)
Query: 181 YCLRWKYHHSNLQSMFSQLLERECF--CDVTLACEGKHIRAHKVM 223
Y L+ Y ++ D+ L EG+H R +V+
Sbjct: 77 YRLQVTYEGCEPHTVADAYRFLPTLGEVDLHLFAEGRHERLWEVL 121
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.134 0.425
Gapped
Lambda K H
0.267 0.0809 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,406,446
Number of extensions: 235650
Number of successful extensions: 505
Number of sequences better than 10.0: 1
Number of HSP's gapped: 475
Number of HSP's successfully gapped: 80
Length of query: 303
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 210
Effective length of database: 4,105,140
Effective search space: 862079400
Effective search space used: 862079400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (25.6 bits)