RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy7972
(303 letters)
>d1poca_ a.133.1.1 (A:) Phospholipase A2 {European honeybee (Apis
mellifera) [TaxId: 7460]}
Length = 134
Score = 132 bits (333), Expect = 4e-39
Identities = 54/122 (44%), Positives = 73/122 (59%), Gaps = 4/122 (3%)
Query: 66 LIFPGTKWCGAGDIATDYNDLGTNVETDKCCRDHDHCSEYILAKSSLHGLRNNAPFTRVH 125
+I+PGT WCG G+ ++ N+LG TD CCR HD C + + A S HGL N A TR+
Sbjct: 1 IIYPGTLWCGHGNKSSGPNELGRFKHTDACCRTHDMCPDVMSAGESKHGLTNTASHTRLS 60
Query: 126 CRCDKKFYDCLKTAADTGDQPSQMVGYMYFNLLETQCFQESADSSKHTNMESSQQYCLRW 185
C CD KFYDCLK +ADT S VG MYFNL++T+C++ + E ++ CL +
Sbjct: 61 CDCDDKFYDCLKNSADT--ISSYFVGKMYFNLIDTKCYKL--EHPVTGCGERTEGRCLHY 116
Query: 186 KY 187
Sbjct: 117 TV 118
Score = 56.8 bits (137), Expect = 7e-11
Identities = 26/51 (50%), Positives = 36/51 (70%), Gaps = 2/51 (3%)
Query: 253 HCRCDKKFYDCLKTAADTGDQPSQMVGYMYFNLLETQCFQEDYPITNCTKY 303
C CD KFYDCLK +ADT S VG MYFNL++T+C++ ++P+T C +
Sbjct: 60 SCDCDDKFYDCLKNSADT--ISSYFVGKMYFNLIDTKCYKLEHPVTGCGER 108
>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 122
Score = 55.9 bits (134), Expect = 1e-10
Identities = 19/70 (27%), Positives = 35/70 (50%)
Query: 183 LRWKYHHSNLQSMFSQLLERECFCDVTLACEGKHIRAHKVMLSACSTYFDAILSQHDETN 242
+++ H S++ ++L R+ DV + + RAHK +L ACS F +I + + N
Sbjct: 3 IQFTRHASDVLLNLNRLRSRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLKRN 62
Query: 243 PIVVFKDVRV 252
V+ D +
Sbjct: 63 LSVINLDPEI 72
>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF)
protein BTB domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 121
Score = 52.3 bits (125), Expect = 2e-09
Identities = 12/62 (19%), Positives = 28/62 (45%)
Query: 183 LRWKYHHSNLQSMFSQLLERECFCDVTLACEGKHIRAHKVMLSACSTYFDAILSQHDETN 242
L+ H + L +Q+ CDV + + + AH+ +L+ S F+ + ++ +
Sbjct: 6 LQNPSHPTGLLCKANQMRLAGTLCDVVIMVDSQEFHAHRTVLACTSKMFEILFHRNSQHY 65
Query: 243 PI 244
+
Sbjct: 66 TL 67
>d1e6yc_ d.58.31.1 (C:) Methyl-coenzyme M reductase gamma chain
{Archaeon Methanosarcina barkeri [TaxId: 2208]}
Length = 247
Score = 27.5 bits (61), Expect = 1.8
Identities = 12/60 (20%), Positives = 21/60 (35%)
Query: 190 SNLQSMFSQLLERECFCDVTLACEGKHIRAHKVMLSACSTYFDAILSQHDETNPIVVFKD 249
+++ +E E G + H V L FD + + E I++ KD
Sbjct: 128 RDMEQCAKVQMETEITDHALAGVRGATVHGHSVRLQEDGVMFDMLDRRRLENGTIIMDKD 187
>d1g0za_ a.133.1.2 (A:) Snake phospholipase A2 {Indian krait
(Bungarus caeruleus), different isoforms [TaxId:
132961]}
Length = 118
Score = 26.8 bits (59), Expect = 1.9
Identities = 15/65 (23%), Positives = 20/65 (30%), Gaps = 16/65 (24%)
Query: 91 ETDKCCRDHDHCSEYILAKSSLHGLRNNAPFTRVH----------------CRCDKKFYD 134
E D+CC HDHC + L +T C CD+
Sbjct: 38 ELDRCCYTHDHCYNKAANIPGCNPLIKTYSYTCTKPNITCNDTSDSCARFICDCDRTAAI 97
Query: 135 CLKTA 139
C +A
Sbjct: 98 CFASA 102
>d1n28a_ a.133.1.2 (A:) Phospholipase A2 {Human (Homo sapiens),
synovial fluid [TaxId: 9606]}
Length = 124
Score = 26.4 bits (58), Expect = 2.1
Identities = 12/66 (18%), Positives = 16/66 (24%), Gaps = 14/66 (21%)
Query: 91 ETDKCCRDHDHCSEYILAKSSLHGL--------------RNNAPFTRVHCRCDKKFYDCL 136
TD+CC D C + + + C CDK C
Sbjct: 39 ATDRCCVTQDCCYKRLEKRGCGTKFLSYKFSNSGSRITCAKQDSCRSQLCECDKAAATCF 98
Query: 137 KTAADT 142
T
Sbjct: 99 ARNKTT 104
>d1eucb2 d.142.1.4 (B:0-245) Succinyl-CoA synthetase, beta-chain,
N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}
Length = 246
Score = 27.2 bits (59), Expect = 2.3
Identities = 14/189 (7%), Positives = 43/189 (22%), Gaps = 12/189 (6%)
Query: 78 DIATDYNDLGTNVETDKCCRDHDHCSEYILAKSSLHGLR--NNAPFTRVHCRCDKKFYDC 135
+ L K + + + G+ + + +
Sbjct: 31 EALEAAKRLNAKEIVLKAQILAGGRGKGVFSSGLKGGVHLTKDPEVVGQLAKQMIGYNLA 90
Query: 136 LKTAADTGDQPSQMVGYMYFNLLETQCFQESADSSKHTNMESSQQYCLRWKYHHSNLQSM 195
K G + ++++ ++ D S + + +
Sbjct: 91 TKQTPKEGVKVNKVMVAEALDISRETYLAILMDRSCNGPVLVGSPQGGVDIEEVAASNPE 150
Query: 196 FSQLLERECFCDVTLACEGKHIRAHKVMLSACSTYFDAILSQHD----------ETNPIV 245
+ + + + + + + D I ++ E NP
Sbjct: 151 LIFKEQIDIIEGIKDSQAQRMAENLGFLGPLQNQAADQIKKLYNLFLKIDATQVEVNPFG 210
Query: 246 VFKDVRVHC 254
+ +V C
Sbjct: 211 ETPEGQVVC 219
>d1jiaa_ a.133.1.2 (A:) Snake phospholipase A2 {Snake (Agkistrodon
halys) [TaxId: 8714]}
Length = 122
Score = 25.7 bits (56), Expect = 4.1
Identities = 15/64 (23%), Positives = 20/64 (31%), Gaps = 12/64 (18%)
Query: 91 ETDKCCRDHDHCSEYILAKSSLHGLR------------NNAPFTRVHCRCDKKFYDCLKT 138
TD+CC HD C E + + P + C CDK C +
Sbjct: 39 ATDRCCFVHDCCYEKVTGCDPKWDDYTYSWKNGTIVCGGDDPCKKEVCECDKAAAICFRD 98
Query: 139 AADT 142
T
Sbjct: 99 NLKT 102
>d1bjja_ a.133.1.2 (A:) Snake phospholipase A2 {Snake (Agkistrodon
halys) [TaxId: 8714]}
Length = 122
Score = 25.7 bits (56), Expect = 4.2
Identities = 13/64 (20%), Positives = 23/64 (35%), Gaps = 12/64 (18%)
Query: 91 ETDKCCRDHDHCSEYILAKSSLHGLRN------------NAPFTRVHCRCDKKFYDCLKT 138
TD+CC HD C ++ ++ + + C CD+ +C +
Sbjct: 39 GTDRCCFVHDCCYGRLVNCNTKSDIYSYSLKEGYITCGKGTNCEEQICECDRVAAECFRR 98
Query: 139 AADT 142
DT
Sbjct: 99 NLDT 102
>d1lwba_ a.133.1.3 (A:) Prokaryotic phospholipase A2 {Streptomyces
violaceoruber [TaxId: 1935]}
Length = 122
Score = 25.4 bits (55), Expect = 5.4
Identities = 18/107 (16%), Positives = 30/107 (28%), Gaps = 12/107 (11%)
Query: 36 NKYNYLKGNNNNKYSNFNSNQDSYRSDKSDLIFPGTKWCGAGDIATDYNDLGTNVETDKC 95
+K L S+ N+ + ++S W + D+ T D +
Sbjct: 4 DKPQVLASFTQTSASSQNA-WLAANRNQSAWAAYEFDW--STDLCTQAPDNPFGFPFNTA 60
Query: 96 CRDHDHCSEYILAKSSLHGLRNNAPFTRVHCRCDKKFYDCLKTAADT 142
C HD + F R D FY+ +K
Sbjct: 61 CARHDFG---------YRNYKAAGSFDANKSRIDSAFYEDMKRVCTG 98
>d1u8va2 e.6.1.1 (A:1-275) 4-hydroxybutyryl-CoA dehydratase AbfD, NM
domains {Clostridium aminobutyricum [TaxId: 33953]}
Length = 275
Score = 26.1 bits (57), Expect = 5.5
Identities = 6/28 (21%), Positives = 9/28 (32%)
Query: 225 SACSTYFDAILSQHDETNPIVVFKDVRV 252
D Q +VVF +V +
Sbjct: 240 MEEGADIDLGNKQFGGQEALVVFDNVFI 267
>d1yq9a1 e.19.1.1 (A:4-264) Nickel-iron hydrogenase, small subunit
{Desulfovibrio gigas [TaxId: 879]}
Length = 261
Score = 26.1 bits (57), Expect = 5.6
Identities = 11/47 (23%), Positives = 17/47 (36%)
Query: 239 DETNPIVVFKDVRVHCRCDKKFYDCLKTAADTGDQPSQMVGYMYFNL 285
D+ V+F VH C + + A + P GY + L
Sbjct: 168 DKQGRPVMFFGETVHDNCPRLKHFEAGEFATSFGSPEAKKGYCLYEL 214
>d1mc2a_ a.133.1.2 (A:) Snake phospholipase A2 {Hundred-pace snake
(Agkistrodon acutus) [TaxId: 36307]}
Length = 122
Score = 25.3 bits (55), Expect = 5.7
Identities = 18/65 (27%), Positives = 23/65 (35%), Gaps = 12/65 (18%)
Query: 90 VETDKCCRDHDHCSEYILAKSSLHGL------------RNNAPFTRVHCRCDKKFYDCLK 137
TD+CC H C + + S N P + C CDK F CL+
Sbjct: 38 DATDRCCFVHKCCYKKLTDCDSKKDRYSYKWKNKAIVCGKNQPCMQEMCECDKAFAICLR 97
Query: 138 TAADT 142
DT
Sbjct: 98 ENLDT 102
>d1sz8a_ a.133.1.2 (A:) Snake phospholipase A2 {Andaman cobra (Naja
sagittifera), acidic isoform 1 [TaxId: 195058]}
Length = 119
Score = 25.3 bits (55), Expect = 5.8
Identities = 11/63 (17%), Positives = 17/63 (26%), Gaps = 16/63 (25%)
Query: 91 ETDKCCRDHDHCSEYILAKSSLHGLRNNAPFTRVH----------------CRCDKKFYD 134
+ D+CC+ HD+C S + C CD+
Sbjct: 39 DLDRCCQVHDNCYNEAENISGCRPYFKTYSYECTQGTLTCKGDNNACAASVCDCDRLAAI 98
Query: 135 CLK 137
C
Sbjct: 99 CFA 101
>d1ppaa_ a.133.1.2 (A:) Snake phospholipase A2 {Eastern cottonmouth
snake (Agkistrodon piscivorus piscivorus) [TaxId: 8716]}
Length = 121
Score = 24.9 bits (54), Expect = 7.5
Identities = 15/64 (23%), Positives = 21/64 (32%), Gaps = 12/64 (18%)
Query: 91 ETDKCCRDHDHCSEYILAKSSLHGL------------RNNAPFTRVHCRCDKKFYDCLKT 138
TD+CC H C + + + P + C CDK CL+
Sbjct: 39 ATDRCCFVHKCCYKKLTDCNHKTDRYSYSWKNKAIICEEKNPCLKEMCECDKAVAICLRE 98
Query: 139 AADT 142
DT
Sbjct: 99 NLDT 102
>d1jlta_ a.133.1.2 (A:) Snake phospholipase A2 {Sand viper (Vipera
ammodytes meridionalis), vipoxin inhibitor [TaxId:
8704]}
Length = 122
Score = 24.9 bits (54), Expect = 7.9
Identities = 14/64 (21%), Positives = 20/64 (31%), Gaps = 12/64 (18%)
Query: 91 ETDKCCRDHDHCSEYILAKSSLHGL------------RNNAPFTRVHCRCDKKFYDCLKT 138
TD+CC D C + + +N R C CD+ CL
Sbjct: 39 ATDRCCFAQDCCYGRVNDCNPKTATYTYSFENGDIVCGDNDLCLRAVCECDRAAAICLGE 98
Query: 139 AADT 142
+T
Sbjct: 99 NVNT 102
>d2g58a1 a.133.1.2 (A:1-133) Snake phospholipase A2 {Snake (Daboia
russellii pulchella), different isoforms [TaxId: 97228]}
Length = 121
Score = 24.5 bits (53), Expect = 9.1
Identities = 13/64 (20%), Positives = 18/64 (28%), Gaps = 12/64 (18%)
Query: 91 ETDKCCRDHDHCSEYILAKSSLHGL------------RNNAPFTRVHCRCDKKFYDCLKT 138
TD+CC HD C + + C CDK C +
Sbjct: 39 ATDRCCFVHDCCYGNLPDCNPKSDRYKYKRVNGAIVCEKGTSCENRICECDKAAAICFRQ 98
Query: 139 AADT 142
+T
Sbjct: 99 NLNT 102
>d2chca1 d.17.4.25 (A:1-167) Uncharacterized protein Rv3472
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 167
Score = 25.2 bits (54), Expect = 9.3
Identities = 9/56 (16%), Positives = 16/56 (28%), Gaps = 1/56 (1%)
Query: 202 RECFC-DVTLACEGKHIRAHKVMLSACSTYFDAILSQHDETNPIVVFKDVRVHCRC 256
CF D +G IR + + + +H T+ + R
Sbjct: 34 AGCFTEDGAFEFDGWVIRGRPALREYADAHARVVRGRHLTTDLLYEVDGDVATGRS 89
>d2ivxa1 a.74.1.1 (A:7-149) Cyclin-T2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 143
Score = 25.0 bits (54), Expect = 9.6
Identities = 12/78 (15%), Positives = 26/78 (33%), Gaps = 3/78 (3%)
Query: 215 KHIRAHKVMLSACSTYFDAILSQHDETNPIVVFKDVRVHCRCDKKFYDCLKTAADTGDQP 274
+ + + F L+ E + ++V C L T D Q
Sbjct: 66 HSFTKFNKNIISSTALF---LAAKVEEQARKLEHVIKVAHACLHPLEPLLDTKCDAYLQQ 122
Query: 275 SQMVGYMYFNLLETQCFQ 292
++ + + +L+T F+
Sbjct: 123 TRELVILETIMLQTLGFE 140
>d1gmza_ a.133.1.2 (A:) Snake phospholipase A2 {Snake (Bothrops
pirajai), piratoxin III [TaxId: 113192]}
Length = 122
Score = 24.5 bits (53), Expect = 9.7
Identities = 18/66 (27%), Positives = 21/66 (31%), Gaps = 16/66 (24%)
Query: 91 ETDKCCRDHDHCSEYILAKSSLHGLR--------------NNAPFTRVHCRCDKKFYDCL 136
TD+CC HD C Y S N P + C CDK C
Sbjct: 39 ATDRCCFVHDCC--YGKLTSCKPKTDRYSYSRKDGTIVCGENDPCRKEICECDKAAAVCF 96
Query: 137 KTAADT 142
+ DT
Sbjct: 97 RENLDT 102
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.134 0.425
Gapped
Lambda K H
0.267 0.0463 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,118,278
Number of extensions: 49588
Number of successful extensions: 181
Number of sequences better than 10.0: 1
Number of HSP's gapped: 161
Number of HSP's successfully gapped: 47
Length of query: 303
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 218
Effective length of database: 1,240,546
Effective search space: 270439028
Effective search space used: 270439028
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.8 bits)