BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7973
(132 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1NB0|A Chain A, Crystal Structure Of Human Riboflavin Kinase
pdb|1NB9|A Chain A, Crystal Structure Of Riboflavin Kinase
pdb|1P4M|A Chain A, Crystal Structure Of Riboflavin Kinase
Length = 147
Score = 139 bits (349), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 61/109 (55%), Positives = 82/109 (75%), Gaps = 1/109 (0%)
Query: 22 PYFTKGIIVKGFGRGSKELGIPTANMCDEAVKSLPESFDPGVYYGWSKLSDGPTVYKMVM 81
PYF +G +V+GFGRGSK+LGIPTAN ++ V +LP G+YYGW+ + G V+KMV+
Sbjct: 4 PYFCRGQVVRGFGRGSKQLGIPTANFPEQVVDNLPADISTGIYYGWASVGSG-DVHKMVV 62
Query: 82 SIGWNPFYKNKKKSMEVHIIHEFGRDLYDLTLSICVLGYIRPELDFNSL 130
SIGWNP+YKN KKSME HI+H F D Y L++ ++GY+RPE +F+SL
Sbjct: 63 SIGWNPYYKNTKKSMETHIMHTFKEDFYGEILNVAIVGYLRPEKNFDSL 111
>pdb|1Q9S|A Chain A, Crystal Structure Of Riboflavin Kinase With Ternary
Product Complex
Length = 149
Score = 139 bits (349), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 61/109 (55%), Positives = 82/109 (75%), Gaps = 1/109 (0%)
Query: 22 PYFTKGIIVKGFGRGSKELGIPTANMCDEAVKSLPESFDPGVYYGWSKLSDGPTVYKMVM 81
PYF +G +V+GFGRGSK+LGIPTAN ++ V +LP G+YYGW+ + G V+KMV+
Sbjct: 6 PYFCRGQVVRGFGRGSKQLGIPTANFPEQVVDNLPADISTGIYYGWASVGSG-DVHKMVV 64
Query: 82 SIGWNPFYKNKKKSMEVHIIHEFGRDLYDLTLSICVLGYIRPELDFNSL 130
SIGWNP+YKN KKSME HI+H F D Y L++ ++GY+RPE +F+SL
Sbjct: 65 SIGWNPYYKNTKKSMETHIMHTFKEDFYGEILNVAIVGYLRPEKNFDSL 113
>pdb|1N05|A Chain A, Crystal Structure Of Schizosaccharomyces Pombe Riboflavin
Kinase Reveals A Novel Atp And Riboflavin Binding Fold
pdb|1N06|A Chain A, Crystal Structure Of Schizosaccharomyces Pombe Riboflavin
Kinase Reveals A Novel Atp And Riboflavin Binding Fold
pdb|1N06|B Chain B, Crystal Structure Of Schizosaccharomyces Pombe Riboflavin
Kinase Reveals A Novel Atp And Riboflavin Binding Fold
pdb|1N07|A Chain A, Crystal Structure Of Schizosaccharomyces Pombe Riboflavin
Kinase Reveals A Novel Atp And Riboflavin Binding Fold
pdb|1N07|B Chain B, Crystal Structure Of Schizosaccharomyces Pombe Riboflavin
Kinase Reveals A Novel Atp And Riboflavin Binding Fold
pdb|1N08|A Chain A, Crystal Structure Of Schizosaccharomyces Pombe Riboflavin
Kinase Reveals A Novel Atp And Riboflavin Binding Fold
pdb|1N08|B Chain B, Crystal Structure Of Schizosaccharomyces Pombe Riboflavin
Kinase Reveals A Novel Atp And Riboflavin Binding Fold
Length = 163
Score = 123 bits (308), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 57/116 (49%), Positives = 80/116 (68%), Gaps = 2/116 (1%)
Query: 15 HQAKDKYPYFTKGIIVKGFGRGSKELGIPTANMCDEAVKSLPESFDPGVYYGWSKLSDGP 74
+ + YP +G +V GFGRGSKELGIPTAN+ ++A++ L D GVY+G++ +
Sbjct: 16 EKVQSPYPIRFEGKVVHGFGRGSKELGIPTANISEDAIQELLRYRDSGVYFGYAMVQK-- 73
Query: 75 TVYKMVMSIGWNPFYKNKKKSMEVHIIHEFGRDLYDLTLSICVLGYIRPELDFNSL 130
V+ MVMS+GWNP+YKNK +S EVH+I G D Y+ + + VLGYIRPEL++ L
Sbjct: 74 RVFPMVMSVGWNPYYKNKLRSAEVHLIERQGEDFYEEIMRVIVLGYIRPELNYAGL 129
>pdb|3BNW|A Chain A, Crystal Structure Of Riboflavin Kinase From Trypanosoma
Brucei
pdb|3BNW|B Chain B, Crystal Structure Of Riboflavin Kinase From Trypanosoma
Brucei
Length = 181
Score = 73.6 bits (179), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 44/117 (37%), Positives = 61/117 (52%), Gaps = 8/117 (6%)
Query: 22 PYFTKGIIVKGFGRGSKELGIPTANM-CDEAVKSLPESFDPGVYYGWSKLSDGPT----- 75
P+F +G +V G GRG +LG PTAN+ D+ V + + V YGW +S P
Sbjct: 17 PFFLRGKVVHGKGRGGSQLGFPTANIGLDKDVMECLQPYKNLVVYGWGTVSQVPGKERES 76
Query: 76 --VYKMVMSIGWNPFYKNKKKSMEVHIIHEFGRDLYDLTLSICVLGYIRPELDFNSL 130
Y SIG+N + K ++E + +HEFG D Y + I VLG IR F+SL
Sbjct: 77 FGPYPFAASIGFNMQFDEKTLTVEPYFLHEFGWDFYGAVVKIIVLGEIRSMGSFHSL 133
>pdb|2X0K|A Chain A, Crystal Structure Of Modular Fad Synthetase From
Corynebacterium Ammoniagenes
pdb|2X0K|B Chain B, Crystal Structure Of Modular Fad Synthetase From
Corynebacterium Ammoniagenes
Length = 338
Score = 58.9 bits (141), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 61/118 (51%), Gaps = 14/118 (11%)
Query: 23 YFTKGIIVKGFGRGSKELGIPTANMCDEAVKSLPESFDPGVYYGWSKL--SDGP------ 74
++ G +V+G GRG KELG PTAN +LP GVY GW + ++ P
Sbjct: 187 FYVTGPVVRGAGRGGKELGFPTANQYFHDTVALPAD---GVYAGWLTILPTEAPVSGNME 243
Query: 75 --TVYKMVMSIGWNPFYKNKKKSMEVHIIHEFGRDLYDLTLSICVLGYIRPELDFNSL 130
Y +S+G NP + ++++S+E ++ + DLY + + + ++R F+S+
Sbjct: 244 PEVAYAAAISVGTNPTFGDEQRSVESFVL-DRDADLYGHDVKVEFVDHVRAMEKFDSV 300
>pdb|3ZUG|A Chain A, E268d Mutant Of Fad Synthetase From Corynebacterium
Ammoniagenes
pdb|3ZUG|B Chain B, E268d Mutant Of Fad Synthetase From Corynebacterium
Ammoniagenes
Length = 338
Score = 57.4 bits (137), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 61/118 (51%), Gaps = 14/118 (11%)
Query: 23 YFTKGIIVKGFGRGSKELGIPTANMCDEAVKSLPESFDPGVYYGWSKL--SDGP------ 74
++ G +V+G GRG KELG PTAN +LP GVY GW + ++ P
Sbjct: 187 FYVTGPVVRGAGRGGKELGFPTANQYFHDTVALPAD---GVYAGWLTILPTEAPVSGNME 243
Query: 75 --TVYKMVMSIGWNPFYKNKKKSMEVHIIHEFGRDLYDLTLSICVLGYIRPELDFNSL 130
Y +S+G NP + ++++S++ ++ + DLY + + + ++R F+S+
Sbjct: 244 PEVAYAAAISVGTNPTFGDEQRSVDSFVL-DRDADLYGHDVKVEFVDHVRAMEKFDSV 300
>pdb|1MRZ|A Chain A, Crystal Structure Of A Flavin Binding Protein From
Thermotoga Maritima, Tm379
pdb|1MRZ|B Chain B, Crystal Structure Of A Flavin Binding Protein From
Thermotoga Maritima, Tm379
pdb|1T6X|A Chain A, Crystal Structure Of Adp Bound Tm379
pdb|1T6X|B Chain B, Crystal Structure Of Adp Bound Tm379
pdb|1T6Y|A Chain A, Crystal Structure Of Adp, Amp, And Fmn Bound Tm379
pdb|1T6Y|B Chain B, Crystal Structure Of Adp, Amp, And Fmn Bound Tm379
pdb|1T6Z|A Chain A, Crystal Structure Of Riboflavin Bound Tm379
pdb|1T6Z|B Chain B, Crystal Structure Of Riboflavin Bound Tm379
pdb|1S4M|A Chain A, Crystal Structure Of Flavin Binding To Fad Synthetase From
Thermotoga Maritina
pdb|1S4M|B Chain B, Crystal Structure Of Flavin Binding To Fad Synthetase From
Thermotoga Maritina
Length = 293
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 54/101 (53%), Gaps = 8/101 (7%)
Query: 31 KGFGRGSKELGIPTANMCDEAVKSLPESFDPGVYYGWSKLSDGPTVYKMVMSIGWNPFYK 90
+ FGR +LG PTAN+ D + L + GVY L DG + VM++G+ P
Sbjct: 170 REFGR---KLGFPTANI-DRGNEKLVD-LKRGVYLVRVHLPDGKKKFG-VMNVGFRPTVG 223
Query: 91 NKKK-SMEVHIIHEFGRDLYDLTLSICVLGYIRPELDFNSL 130
+ + EV+I+ +F DLY L + VL ++R E F+S+
Sbjct: 224 DARNVKYEVYIL-DFEGDLYGQRLKLEVLKFMRDEKKFDSI 263
>pdb|3OP1|A Chain A, Crystal Structure Of Macrolide-Efflux Protein Sp_1110 From
Streptococcus Pneumoniae
pdb|3OP1|B Chain B, Crystal Structure Of Macrolide-Efflux Protein Sp_1110 From
Streptococcus Pneumoniae
pdb|3OP1|C Chain C, Crystal Structure Of Macrolide-Efflux Protein Sp_1110 From
Streptococcus Pneumoniae
Length = 308
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 55/111 (49%), Gaps = 11/111 (9%)
Query: 22 PYFTKGIIVKGFGRGSKELGIPTANMCDEAVKSLPESFDP--GVYYGWSKLSDGPTVYKM 79
P ++G +V G RG + +G PTAN+ L ++ P GVY ++ Y+
Sbjct: 189 PLPSRGXVVHGNARG-RTIGYPTANLV-----LLDRTYXPADGVYVVDVEIQRQK--YRA 240
Query: 80 VMSIGWNPFYKNKKKSMEVHIIHEFGRDLYDLTLSICVLGYIRPELDFNSL 130
S+G N + ++ EV+I +F +D+Y T+ + L IR F+S+
Sbjct: 241 XASVGKNVTFDGEEARFEVNIF-DFNQDIYGETVXVYWLDRIRDXTKFDSV 290
>pdb|2I1L|A Chain A, Crystal Structure Of The C2 Form Of Fad Synthetase From
Thermotoga Maritima
pdb|2I1L|B Chain B, Crystal Structure Of The C2 Form Of Fad Synthetase From
Thermotoga Maritima
Length = 293
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 52/101 (51%), Gaps = 8/101 (7%)
Query: 31 KGFGRGSKELGIPTANMCDEAVKSLPESFDPGVYYGWSKLSDGPTVYKMVMSIGWNPFYK 90
+ FGR +LG PTAN+ D + L + GVY L DG + V ++G+ P
Sbjct: 170 REFGR---KLGFPTANI-DRGNEKLVD-LKRGVYLVRVHLPDGKKKFG-VXNVGFRPTVG 223
Query: 91 NKKK-SMEVHIIHEFGRDLYDLTLSICVLGYIRPELDFNSL 130
+ + EV+I+ +F DLY L + VL + R E F+S+
Sbjct: 224 DARNVKYEVYIL-DFEGDLYGQRLKLEVLKFXRDEKKFDSI 263
>pdb|4FLO|A Chain A, Crystal Structure Of Amylosucrase Double Mutant
A289p-F290c From Neisseria Polysaccharea
Length = 628
Score = 27.7 bits (60), Expect = 2.1, Method: Composition-based stats.
Identities = 20/79 (25%), Positives = 34/79 (43%), Gaps = 4/79 (5%)
Query: 43 PTANMCDEAVKSLPESFDPGVYYGWSKLSDGPTVYKMVMSIGWNPFYKN----KKKSMEV 98
P M D+ ++L E F G+S+L DG V+ S W+ Y N + + E+
Sbjct: 213 PDRRMPDQYDRTLREIFPDQHPGGFSQLEDGRWVWTTFNSFQWDLNYSNPWVFRAMAGEM 272
Query: 99 HIIHEFGRDLYDLTLSICV 117
+ G D+ + C+
Sbjct: 273 LFLANLGVDILRMDAVPCI 291
>pdb|2VGN|A Chain A, Structure Of Yeast Dom34 : A Protein Related To
Translation Termination Factor Erf1 And Involved In
No-go Decay.
pdb|2VGN|B Chain B, Structure Of Yeast Dom34 : A Protein Related To
Translation Termination Factor Erf1 And Involved In
No-go Decay
Length = 386
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 94 KSMEVHIIHEFGRDLYDLTLSICVLGYIRPELD 126
K++ + +H G +L LT C+L Y P+LD
Sbjct: 348 KALVLSTLHSLGEELDQLTGIACILKYPLPDLD 380
>pdb|2VGM|A Chain A, Structure Of Yeast Dom34 : A Protein Related To
Translation Termination Factor Erf1 And Involved In
No-Go Decay.
pdb|3IZQ|0 Chain 0, Structure Of The Dom34-Hbs1-Gdpnp Complex Bound To A
Translating Ribosome
pdb|3J16|A Chain A, Models Of Ribosome-Bound Dom34p And Rli1p And Their
Ribosomal Binding Partners
Length = 386
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 94 KSMEVHIIHEFGRDLYDLTLSICVLGYIRPELD 126
K++ + +H G +L LT C+L Y P+LD
Sbjct: 348 KALVLSTLHSLGEELDQLTGIACILKYPLPDLD 380
>pdb|1OBK|A Chain A, Crystal Structure Of The R158q Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
pdb|1OBK|B Chain B, Crystal Structure Of The R158q Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
Length = 414
Score = 27.3 bits (59), Expect = 2.8, Method: Composition-based stats.
Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 9/47 (19%)
Query: 30 VKGFGRGSKELGIPTANMCDEAVKSLPESFDPGVYYGWSKLSDGPTV 76
++G G K++ I TANM P +Y GW SD P V
Sbjct: 54 LRGIAVGIKDI-IDTANM--------PTEMGSEIYRGWQPRSDAPVV 91
>pdb|1OBL|A Chain A, Crystal Structure Of The S133a Mutant Of Malonamidase E2
Complexed With Malonate From Bradyrhizobium Japonicum
pdb|1OBL|B Chain B, Crystal Structure Of The S133a Mutant Of Malonamidase E2
Complexed With Malonate From Bradyrhizobium Japonicum
Length = 414
Score = 27.3 bits (59), Expect = 2.8, Method: Composition-based stats.
Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 9/47 (19%)
Query: 30 VKGFGRGSKELGIPTANMCDEAVKSLPESFDPGVYYGWSKLSDGPTV 76
++G G K++ I TANM P +Y GW SD P V
Sbjct: 54 LRGIAVGIKDI-IDTANM--------PTEMGSEIYRGWQPRSDAPVV 91
>pdb|1OBI|A Chain A, Crystal Structure Of The G130a Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
pdb|1OBI|B Chain B, Crystal Structure Of The G130a Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
Length = 414
Score = 27.3 bits (59), Expect = 2.8, Method: Composition-based stats.
Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 9/47 (19%)
Query: 30 VKGFGRGSKELGIPTANMCDEAVKSLPESFDPGVYYGWSKLSDGPTV 76
++G G K++ I TANM P +Y GW SD P V
Sbjct: 54 LRGIAVGIKDI-IDTANM--------PTEMGSEIYRGWQPRSDAPVV 91
>pdb|1O9Q|A Chain A, Crystal Structure Of The S155c Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
pdb|1O9Q|B Chain B, Crystal Structure Of The S155c Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
pdb|1OCH|A Chain A, Crystal Structure Of The S155c Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
pdb|1OCH|B Chain B, Crystal Structure Of The S155c Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
Length = 414
Score = 27.3 bits (59), Expect = 2.8, Method: Composition-based stats.
Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 9/47 (19%)
Query: 30 VKGFGRGSKELGIPTANMCDEAVKSLPESFDPGVYYGWSKLSDGPTV 76
++G G K++ I TANM P +Y GW SD P V
Sbjct: 54 LRGIAVGIKDI-IDTANM--------PTEMGSEIYRGWQPRSDAPVV 91
>pdb|1O9O|A Chain A, Crystal Structure Of The S131a Mutant Of Malonamidase E2
Complexed With Malonamate From Bradyrhizobium Japonicum
pdb|1O9O|B Chain B, Crystal Structure Of The S131a Mutant Of Malonamidase E2
Complexed With Malonamate From Bradyrhizobium Japonicum
pdb|1O9P|A Chain A, Crystal Structure Of The S131a Mutant Of Malonamidase E2
Complexed With Malonate From Bradyrhizobium Japonicum
pdb|1O9P|B Chain B, Crystal Structure Of The S131a Mutant Of Malonamidase E2
Complexed With Malonate From Bradyrhizobium Japonicum
Length = 414
Score = 27.3 bits (59), Expect = 2.8, Method: Composition-based stats.
Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 9/47 (19%)
Query: 30 VKGFGRGSKELGIPTANMCDEAVKSLPESFDPGVYYGWSKLSDGPTV 76
++G G K++ I TANM P +Y GW SD P V
Sbjct: 54 LRGIAVGIKDI-IDTANM--------PTEMGSEIYRGWQPRSDAPVV 91
>pdb|1OBJ|A Chain A, Crystal Structure Of The T150a Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
pdb|1OBJ|B Chain B, Crystal Structure Of The T150a Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
Length = 414
Score = 27.3 bits (59), Expect = 2.8, Method: Composition-based stats.
Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 9/47 (19%)
Query: 30 VKGFGRGSKELGIPTANMCDEAVKSLPESFDPGVYYGWSKLSDGPTV 76
++G G K++ I TANM P +Y GW SD P V
Sbjct: 54 LRGIAVGIKDI-IDTANM--------PTEMGSEIYRGWQPRSDAPVV 91
>pdb|1OCK|A Chain A, The Crystal Structure Of Malonamidase E2 From
Bradyrhizobium Japonicum
pdb|1OCK|B Chain B, The Crystal Structure Of Malonamidase E2 From
Bradyrhizobium Japonicum
pdb|1OCL|A Chain A, The Crystal Structure Of Malonamidase E2 Complexed With
Malonate From Bradyrhizobium Japonicum
pdb|1OCL|B Chain B, The Crystal Structure Of Malonamidase E2 Complexed With
Malonate From Bradyrhizobium Japonicum
pdb|1OCM|A Chain A, The Crystal Structure Of Malonamidase E2 Covalently
Complexed With Pyrophosphate From Bradyrhizobium
Japonicum
pdb|1OCM|B Chain B, The Crystal Structure Of Malonamidase E2 Covalently
Complexed With Pyrophosphate From Bradyrhizobium
Japonicum
Length = 412
Score = 27.3 bits (59), Expect = 2.8, Method: Composition-based stats.
Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 9/47 (19%)
Query: 30 VKGFGRGSKELGIPTANMCDEAVKSLPESFDPGVYYGWSKLSDGPTV 76
++G G K++ I TANM P +Y GW SD P V
Sbjct: 54 LRGIAVGIKDI-IDTANM--------PTEMGSEIYRGWQPRSDAPVV 91
>pdb|4FLQ|A Chain A, Crystal Structure Of Amylosucrase Double Mutant
A289p-F290i From Neisseria Polysaccharea
Length = 628
Score = 26.9 bits (58), Expect = 3.1, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 23/49 (46%)
Query: 43 PTANMCDEAVKSLPESFDPGVYYGWSKLSDGPTVYKMVMSIGWNPFYKN 91
P M D+ ++L E F G+S+L DG V+ S W+ Y N
Sbjct: 213 PDRRMPDQYDRTLREIFPDQHPGGFSQLEDGRWVWTTFNSFQWDLNYSN 261
>pdb|4FLS|A Chain A, Crystal Structure Of Amylosucrase Inactive Double Mutant
F290k-E328q From Neisseria Polysaccharea In Complex With
Sucrose
Length = 628
Score = 26.9 bits (58), Expect = 3.1, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 23/49 (46%)
Query: 43 PTANMCDEAVKSLPESFDPGVYYGWSKLSDGPTVYKMVMSIGWNPFYKN 91
P M D+ ++L E F G+S+L DG V+ S W+ Y N
Sbjct: 213 PDRRMPDQYDRTLREIFPDQHPGGFSQLEDGRWVWTTFNSFQWDLNYSN 261
>pdb|4FLR|A Chain A, Crystal Structure Of Amylosucrase Double Mutant
A289p-F290l From Neisseria Polysaccharea
Length = 628
Score = 26.9 bits (58), Expect = 3.1, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 23/49 (46%)
Query: 43 PTANMCDEAVKSLPESFDPGVYYGWSKLSDGPTVYKMVMSIGWNPFYKN 91
P M D+ ++L E F G+S+L DG V+ S W+ Y N
Sbjct: 213 PDRRMPDQYDRTLREIFPDQHPGGFSQLEDGRWVWTTFNSFQWDLNYSN 261
>pdb|1JGI|A Chain A, Crystal Structure Of The Active Site Mutant Glu328gln Of
Amylosucrase From Neisseria Polysaccharea In Complex
With The Natural Substrate Sucrose
Length = 628
Score = 26.9 bits (58), Expect = 3.1, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 23/49 (46%)
Query: 43 PTANMCDEAVKSLPESFDPGVYYGWSKLSDGPTVYKMVMSIGWNPFYKN 91
P M D+ ++L E F G+S+L DG V+ S W+ Y N
Sbjct: 213 PDRRMPDQYDRTLREIFPDQHPGGFSQLEDGRWVWTTFNSFQWDLNYSN 261
>pdb|1G5A|A Chain A, Amylosucrase From Neisseria Polysaccharea
pdb|1JG9|A Chain A, Crystal Structure Of Amylosucrase From Neisseria
Polysaccharea In Complex With D-glucose
pdb|1MW1|A Chain A, Amylosucrase Soaked With 14mm Sucrose.
pdb|1MW2|A Chain A, Amylosucrase Soaked With 100mm Sucrose
pdb|1MW3|A Chain A, Amylosucrase Soaked With 1m Sucrose
Length = 628
Score = 26.9 bits (58), Expect = 3.1, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 23/49 (46%)
Query: 43 PTANMCDEAVKSLPESFDPGVYYGWSKLSDGPTVYKMVMSIGWNPFYKN 91
P M D+ ++L E F G+S+L DG V+ S W+ Y N
Sbjct: 213 PDRRMPDQYDRTLREIFPDQHPGGFSQLEDGRWVWTTFNSFQWDLNYSN 261
>pdb|1MVY|A Chain A, Amylosucrase Mutant E328q Co-Crystallized With
Maltoheptaose.
pdb|1MW0|A Chain A, Amylosucrase Mutant E328q Co-crystallized With
Maltoheptaose Then Soaked With Maltoheptaose.
pdb|1S46|A Chain A, Covalent Intermediate Of The E328q Amylosucrase Mutant
pdb|1ZS2|A Chain A, Amylosucrase Mutant E328q In A Ternary Complex With
Sucrose And Maltoheptaose
Length = 628
Score = 26.9 bits (58), Expect = 3.2, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 23/49 (46%)
Query: 43 PTANMCDEAVKSLPESFDPGVYYGWSKLSDGPTVYKMVMSIGWNPFYKN 91
P M D+ ++L E F G+S+L DG V+ S W+ Y N
Sbjct: 213 PDRRMPDQYDRTLREIFPDQHPGGFSQLEDGRWVWTTFNSFQWDLNYSN 261
>pdb|3UEQ|A Chain A, Crystal Structure Of Amylosucrase From Neisseria
Polysaccharea In Complex With Turanose
Length = 632
Score = 26.9 bits (58), Expect = 3.2, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 23/49 (46%)
Query: 43 PTANMCDEAVKSLPESFDPGVYYGWSKLSDGPTVYKMVMSIGWNPFYKN 91
P M D+ ++L E F G+S+L DG V+ S W+ Y N
Sbjct: 217 PDRRMPDQYDRTLREIFPDQHPGGFSQLEDGRWVWTTFNSFQWDLNYSN 265
>pdb|1V5E|A Chain A, Crystal Structure Of Pyruvate Oxidase Containing Fad, From
Aerococcus Viridans
pdb|2DJI|A Chain A, Crystal Structure Of Pyruvate Oxidase From Aerococcus
Viridans Containing Fad
Length = 590
Score = 26.9 bits (58), Expect = 3.6, Method: Composition-based stats.
Identities = 14/41 (34%), Positives = 19/41 (46%)
Query: 43 PTANMCDEAVKSLPESFDPGVYYGWSKLSDGPTVYKMVMSI 83
P A D AV+ L S P +Y G + GP V ++ I
Sbjct: 190 PAAQDIDAAVELLNNSKRPVIYAGIGTMGHGPAVQELARKI 230
>pdb|1V5F|A Chain A, Crystal Structure Of Pyruvate Oxidase Complexed With Fad
And Tpp, From Aerococcus Viridans
pdb|1V5G|A Chain A, Crystal Structure Of The Reaction Intermediate Between
Pyruvate Oxidase Containing Fad And Tpp, And Substrate
Pyruvate
Length = 589
Score = 26.9 bits (58), Expect = 3.6, Method: Composition-based stats.
Identities = 14/41 (34%), Positives = 19/41 (46%)
Query: 43 PTANMCDEAVKSLPESFDPGVYYGWSKLSDGPTVYKMVMSI 83
P A D AV+ L S P +Y G + GP V ++ I
Sbjct: 189 PAAQDIDAAVELLNNSKRPVIYAGIGTMGHGPAVQELARKI 229
>pdb|2A0A|A Chain A, Solution Structure Of Der F 13, Group 13 Allergen From
House Dust Mites
Length = 131
Score = 26.6 bits (57), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 21/44 (47%)
Query: 71 SDGPTVYKMVMSIGWNPFYKNKKKSMEVHIIHEFGRDLYDLTLS 114
+DG V ++ G N F + + EV II EF D +T S
Sbjct: 75 ADGKRVKTVIQKEGDNKFVQTQFGDKEVKIIREFNGDEVVVTAS 118
>pdb|1FA0|A Chain A, Structure Of Yeast Poly(A) Polymerase Bound To Manganate
And 3'-Datp
pdb|1FA0|B Chain B, Structure Of Yeast Poly(A) Polymerase Bound To Manganate
And 3'-Datp
pdb|3C66|A Chain A, Yeast Poly(A) Polymerase In Complex With Fip1 Residues
80-105
pdb|3C66|B Chain B, Yeast Poly(A) Polymerase In Complex With Fip1 Residues
80-105
Length = 537
Score = 26.2 bits (56), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 70 LSDGPTVYKMVMSIGWNPFYKNKKKSMEVHI 100
+ D P Y M IG + +NKK+ +++HI
Sbjct: 453 IKDAPKAYLSTMYIGLDFNIENKKEKVDIHI 483
>pdb|2Q66|A Chain A, Structure Of Yeast Poly(A) Polymerase With Atp And
Oligo(A)
Length = 525
Score = 26.2 bits (56), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 70 LSDGPTVYKMVMSIGWNPFYKNKKKSMEVHI 100
+ D P Y M IG + +NKK+ +++HI
Sbjct: 449 IKDAPKAYLSTMYIGLDFNIENKKEKVDIHI 479
>pdb|2O1P|A Chain A, Structure Of Yeast Poly(A) Polymerase In A Somewhat Closed
State
pdb|2O1P|B Chain B, Structure Of Yeast Poly(A) Polymerase In A Somewhat Closed
State
Length = 546
Score = 26.2 bits (56), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 70 LSDGPTVYKMVMSIGWNPFYKNKKKSMEVHI 100
+ D P Y M IG + +NKK+ +++HI
Sbjct: 453 IKDAPKAYLSTMYIGLDFNIENKKEKVDIHI 483
>pdb|2HHP|A Chain A, Structure Of Yeast Poly(A) Polymerase In A Closed
Conformation
Length = 530
Score = 26.2 bits (56), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 70 LSDGPTVYKMVMSIGWNPFYKNKKKSMEVHI 100
+ D P Y M IG + +NKK+ +++HI
Sbjct: 453 IKDAPKAYLSTMYIGLDFNIENKKEKVDIHI 483
>pdb|3E2T|A Chain A, The Catalytic Domain Of Chicken Tryptophan Hydroxylase 1
With Bound Tryptophan
Length = 314
Score = 25.8 bits (55), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 27/65 (41%), Gaps = 4/65 (6%)
Query: 13 VCHQAKDKYPYFTKGIIVKGFGRGSKELGIPTANMCDEAVKSLPESFDPGVYYGWSKLSD 72
CH+ P + F + S+E+G+ + DEAV+ L + V +G K
Sbjct: 171 TCHELLGHVPLLAE----PSFAQFSQEIGLASLGASDEAVQKLATCYFFTVEFGLCKQEG 226
Query: 73 GPTVY 77
VY
Sbjct: 227 QLRVY 231
>pdb|3MUN|A Chain A, Appep_pepclose Closed State
pdb|3MUO|A Chain A, Appep_pepclose+pp Closed State
Length = 693
Score = 25.4 bits (54), Expect = 9.6, Method: Composition-based stats.
Identities = 9/32 (28%), Positives = 17/32 (53%)
Query: 59 FDPGVYYGWSKLSDGPTVYKMVMSIGWNPFYK 90
+DP +Y+G+ + PT+Y+ G Y+
Sbjct: 381 WDPALYFGFENYAQPPTLYRFEPKSGAISLYR 412
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.139 0.432
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,433,580
Number of Sequences: 62578
Number of extensions: 187401
Number of successful extensions: 381
Number of sequences better than 100.0: 39
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 348
Number of HSP's gapped (non-prelim): 39
length of query: 132
length of database: 14,973,337
effective HSP length: 88
effective length of query: 44
effective length of database: 9,466,473
effective search space: 416524812
effective search space used: 416524812
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 46 (22.3 bits)