Query psy7973
Match_columns 132
No_of_seqs 118 out of 1012
Neff 6.4
Searched_HMMs 46136
Date Fri Aug 16 23:33:54 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7973.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7973hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00083 ribF riboflavin kina 100.0 3.5E-46 7.5E-51 301.3 11.6 124 2-132 146-271 (288)
2 PF01687 Flavokinase: Riboflav 100.0 1.9E-45 4.2E-50 265.6 8.2 105 21-132 4-108 (125)
3 PRK05627 bifunctional riboflav 100.0 2.5E-44 5.4E-49 292.4 12.7 123 2-132 163-287 (305)
4 COG0196 RibF FAD synthase [Coe 100.0 4.9E-42 1.1E-46 278.7 11.3 123 2-132 163-287 (304)
5 PLN02940 riboflavin kinase 100.0 4E-39 8.8E-44 267.9 11.8 110 21-132 237-347 (382)
6 KOG3110|consensus 100.0 1.1E-38 2.3E-43 231.2 7.8 111 21-132 11-121 (153)
7 PRK07143 hypothetical protein; 100.0 6E-35 1.3E-39 235.0 12.1 102 2-129 152-257 (279)
8 PF04505 Dispanin: Interferon- 68.4 3.3 7E-05 27.6 1.5 20 1-20 40-59 (82)
9 PF08057 Ery_res_leader2: Eryt 61.3 2.7 5.9E-05 18.9 0.0 7 40-46 7-13 (14)
10 PF05801 DUF840: Lagovirus pro 48.2 10 0.00023 26.3 1.2 42 6-50 29-75 (114)
11 PRK10564 maltose regulon perip 48.1 11 0.00025 31.2 1.6 18 3-20 262-279 (303)
12 smart00668 CTLH C-terminal to 44.9 18 0.00039 21.2 1.8 18 3-20 6-23 (58)
13 TIGR02837 spore_II_R stage II 36.9 53 0.0011 25.0 3.6 47 21-82 105-153 (168)
14 cd03123 alpha_CA_VI_IX_XII_XIV 35.6 22 0.00047 28.1 1.4 27 83-110 92-118 (248)
15 PF14498 Glyco_hyd_65N_2: Glyc 31.7 23 0.00051 27.4 1.0 18 3-20 59-76 (236)
16 cd03126 alpha_CA_XII_XIV Carbo 29.8 35 0.00076 27.0 1.7 27 83-110 91-117 (249)
17 cd03120 alpha_CARP_VIII Carbon 27.9 41 0.00089 26.7 1.8 27 83-110 92-118 (256)
18 PF10607 CLTH: CTLH/CRA C-term 26.9 49 0.0011 23.2 1.9 18 3-20 6-23 (145)
19 cd03121 alpha_CARP_X_XI_like C 25.7 47 0.001 26.3 1.8 27 83-110 95-121 (256)
20 KOG0382|consensus 25.0 46 0.00099 26.9 1.6 26 83-110 106-131 (262)
21 PF09551 Spore_II_R: Stage II 24.7 1.1E+02 0.0024 22.3 3.4 36 40-82 81-118 (130)
22 cd03118 alpha_CA_V Carbonic an 24.5 42 0.00091 26.3 1.3 26 84-110 80-105 (236)
23 PF04699 P16-Arc: ARP2/3 compl 22.9 48 0.001 24.7 1.3 19 2-20 40-58 (152)
24 PRK14132 riboflavin kinase; Pr 21.2 67 0.0014 23.3 1.7 99 24-129 2-118 (126)
25 PF07721 TPR_4: Tetratricopept 20.5 66 0.0014 16.1 1.2 17 4-20 7-23 (26)
26 PF00567 TUDOR: Tudor domain; 20.1 1.2E+02 0.0026 19.6 2.7 35 62-105 56-90 (121)
27 cd03149 alpha_CA_VII Carbonic 20.0 58 0.0013 25.5 1.3 27 83-110 79-105 (236)
No 1
>TIGR00083 ribF riboflavin kinase/FMN adenylyltransferase. multifunctional enzyme: riboflavin kinase (EC 2.7.1.26) (flavokinase) / FMN adenylyltransferase (EC 2.7.7.2) (FAD pyrophosphorylase) (FAD synthetase).
Probab=100.00 E-value=3.5e-46 Score=301.29 Aligned_cols=124 Identities=31% Similarity=0.464 Sum_probs=116.7
Q ss_pred cHHHHHHHHCCChhhhhcc--CCeEEEEEEEccCCCCccccCceeecccCCccccCCCCCCCceEEEEEEEcCCCeEEEE
Q psy7973 2 SQSANIIKQNGVCHQAKDK--YPYFTKGIIVKGFGRGSKELGIPTANMCDEAVKSLPESFDPGVYYGWSKLSDGPTVYKM 79 (132)
Q Consensus 2 s~~ir~~l~~g~i~~a~~l--~py~i~G~Vv~G~~~G~~~lGfPTANl~~~~~~~lp~~~~~GVYa~~~~~~~~~~~~~~ 79 (132)
||+||++|++||+++|++| |||+++|+|+||+++|| +||||||||.+++...+|+ .|||++|+.++ +. +|+|
T Consensus 146 ST~IR~~l~~G~i~~A~~lLGr~y~i~G~Vv~G~~~Gr-~lGfPTaNl~~~~~~~~p~---~GVYa~~v~i~-~~-~y~~ 219 (288)
T TIGR00083 146 SSAIRQALKNGDLELANKLLGRPYFICGTVIHGQKLGR-TLGFPTANIKLKNQVLPLK---GGYYVVVVLLN-GE-PYPG 219 (288)
T ss_pred HHHHHHHHHcCCHHHHHHhhhhhhccceEEEecCCCcc-cccCceEEecCcccccCCC---cceEEEEEEeC-Ce-EEEE
Confidence 8999999999999999999 99999999999999996 6999999999887667787 89999999984 66 8999
Q ss_pred EEEecCCCccCCCceEEEEEEccccCCCCCCCeEEEEEeeecCCCCCCCCCCC
Q psy7973 80 VMSIGWNPFYKNKKKSMEVHIIHEFGRDLYDLTLSICVLGYIRPELDFNSLGT 132 (132)
Q Consensus 80 v~niG~~Ptf~~~~~~iEvhil~df~~dlYg~~i~v~~~~~iR~e~kF~s~~~ 132 (132)
|+|||+||||++.+..+|+||| ||++|+||++|+|+|++|||+|+||+|+||
T Consensus 220 v~niG~~PT~~~~~~~~E~~il-df~~dlYg~~i~v~f~~~iR~e~kF~s~~~ 271 (288)
T TIGR00083 220 VGNIGNRPTFIGQQLVIEVHLL-DFSGELYGQEIKVTLVKKIRPEQKFSSLDE 271 (288)
T ss_pred EEEeCCCCccCCCceEEEEEeC-CCCcccCCCEEEEEeHHhccCCCCcCCHHH
Confidence 9999999999876788999999 999999999999999999999999999875
No 2
>PF01687 Flavokinase: Riboflavin kinase; InterPro: IPR015865 Riboflavin is converted into catalytically active cofactors (FAD and FMN) by the actions of riboflavin kinase (2.7.1.26 from EC), which converts it into FMN, and FAD synthetase (2.7.7.2 from EC), which adenylates FMN to FAD. Eukaryotes usually have two separate enzymes, while most prokaryotes have a single bifunctional protein that can carry out both catalyses, although exceptions occur in both cases. While eukaryotic monofunctional riboflavin kinase is orthologous to the bifunctional prokaryotic enzyme [], the monofunctional FAD synthetase differs from its prokaryotic counterpart, and is instead related to the PAPS-reductase family []. The bacterial FAD synthetase that is part of the bifunctional enzyme has remote similarity to nucleotidyl transferases and, hence, it may be involved in the adenylylation reaction of FAD synthetases []. This entry represents the riboflavin kinase domains from bacteria and eukaryotes.; GO: 0008531 riboflavin kinase activity, 0009231 riboflavin biosynthetic process; PDB: 1Q9S_A 1NB9_A 1P4M_A 1NB0_A 3OP1_B 1T6Z_A 2I1L_A 1T6Y_B 1T6X_B 1S4M_A ....
Probab=100.00 E-value=1.9e-45 Score=265.58 Aligned_cols=105 Identities=42% Similarity=0.803 Sum_probs=92.2
Q ss_pred CCeEEEEEEEccCCCCccccCceeecccCCccccCCCCCCCceEEEEEEEcCCCeEEEEEEEecCCCccCCCceEEEEEE
Q psy7973 21 YPYFTKGIIVKGFGRGSKELGIPTANMCDEAVKSLPESFDPGVYYGWSKLSDGPTVYKMVMSIGWNPFYKNKKKSMEVHI 100 (132)
Q Consensus 21 ~py~i~G~Vv~G~~~G~~~lGfPTANl~~~~~~~lp~~~~~GVYa~~~~~~~~~~~~~~v~niG~~Ptf~~~~~~iEvhi 100 (132)
|||+++|+|+||+++|| +||||||||.++.+..+|+ .|||++|+.++ +. +|+||+|||+||||++++.++||||
T Consensus 4 ~py~i~G~Vv~G~~~Gr-~lGfPTANl~~~~~~~~p~---~GVYa~~v~~~-~~-~~~~v~niG~~PTf~~~~~~vE~hi 77 (125)
T PF01687_consen 4 RPYSISGTVVHGFGRGR-KLGFPTANLDIPDDKLLPK---EGVYAVWVRVD-GK-WYPGVTNIGYRPTFDGKERTVEVHI 77 (125)
T ss_dssp SSEEEEEEEEC-SSCCC-CTTS-EEEEEEHCCCTCCC---TEEEEEEEEET-SE-EEEEEEEEEEETTTSSCEEEEEEEE
T ss_pred CCEEEEEEEEeCCcccc-ccCCccccccCCccccccc---CEEEEEEEEEC-CE-EEEeEEEecCCCccCcCceeEEEEE
Confidence 99999999999999996 6999999999966688998 89999999994 66 9999999999999998889999999
Q ss_pred ccccCCCCCCCeEEEEEeeecCCCCCCCCCCC
Q psy7973 101 IHEFGRDLYDLTLSICVLGYIRPELDFNSLGT 132 (132)
Q Consensus 101 l~df~~dlYg~~i~v~~~~~iR~e~kF~s~~~ 132 (132)
| ||++|+||++|+|+|++|||+|+||+|+||
T Consensus 78 l-df~~dlYg~~i~v~~~~~lR~e~kF~s~e~ 108 (125)
T PF01687_consen 78 L-DFDGDLYGKKIKVEFLKFLRPEKKFDSLEE 108 (125)
T ss_dssp T-TSSSE-TTSEEEEEEEEEEEE----SSHHH
T ss_pred e-ccCcccCCCeEEEEEEeCccCCcccCCHHH
Confidence 9 999999999999999999999999999875
No 3
>PRK05627 bifunctional riboflavin kinase/FMN adenylyltransferase; Reviewed
Probab=100.00 E-value=2.5e-44 Score=292.38 Aligned_cols=123 Identities=33% Similarity=0.475 Sum_probs=115.4
Q ss_pred cHHHHHHHHCCChhhhhcc--CCeEEEEEEEccCCCCccccCceeecccCCccccCCCCCCCceEEEEEEEcCCCeEEEE
Q psy7973 2 SQSANIIKQNGVCHQAKDK--YPYFTKGIIVKGFGRGSKELGIPTANMCDEAVKSLPESFDPGVYYGWSKLSDGPTVYKM 79 (132)
Q Consensus 2 s~~ir~~l~~g~i~~a~~l--~py~i~G~Vv~G~~~G~~~lGfPTANl~~~~~~~lp~~~~~GVYa~~~~~~~~~~~~~~ 79 (132)
||+||++|++|||+.|++| |||+++|+|+||+++|| +||||||||.+++. .+|+ .|||++|+.++ +. +|+|
T Consensus 163 ST~IR~~I~~G~i~~A~~lLg~~y~~~g~V~~G~~~Gr-~lgfPTaNl~~~~~-~~p~---~GVY~~~~~i~-~~-~y~~ 235 (305)
T PRK05627 163 STAIRQALAEGDLELANKLLGRPYSISGRVVHGQKLGR-TLGFPTANLPLPDR-VLPA---DGVYAVRVKVD-GK-PYPG 235 (305)
T ss_pred hHHHHHHHHcCCHHHHHhhhcCCCceEEEEEECcccCc-cccceeEeecCccC-CCCC---ceEEEEEEEEC-CE-EEEE
Confidence 8999999999999999999 99999999999999996 69999999998764 4587 89999999995 56 8999
Q ss_pred EEEecCCCccCCCceEEEEEEccccCCCCCCCeEEEEEeeecCCCCCCCCCCC
Q psy7973 80 VMSIGWNPFYKNKKKSMEVHIIHEFGRDLYDLTLSICVLGYIRPELDFNSLGT 132 (132)
Q Consensus 80 v~niG~~Ptf~~~~~~iEvhil~df~~dlYg~~i~v~~~~~iR~e~kF~s~~~ 132 (132)
|+|||+||||++++.++|+||| ||++|+||++++|+|++|||+|+||+|+||
T Consensus 236 ~~~iG~~ptf~~~~~~~E~~i~-df~~d~Yg~~i~v~~~~~iR~e~kF~s~~~ 287 (305)
T PRK05627 236 VANIGTRPTVDGGRQLLEVHLL-DFNGDLYGEHITVEFLKKLRDEQKFDSLDE 287 (305)
T ss_pred EEEecCCCccCCCceEEEEEec-CCCCccCCCEEEEEEhhhcCCCCCcCCHHH
Confidence 9999999999877789999999 999999999999999999999999999875
No 4
>COG0196 RibF FAD synthase [Coenzyme metabolism]
Probab=100.00 E-value=4.9e-42 Score=278.66 Aligned_cols=123 Identities=36% Similarity=0.572 Sum_probs=115.0
Q ss_pred cHHHHHHHHCCChhhhhcc--CCeEEEEEEEccCCCCccccCceeecccCCccccCCCCCCCceEEEEEEEcCCCeEEEE
Q psy7973 2 SQSANIIKQNGVCHQAKDK--YPYFTKGIIVKGFGRGSKELGIPTANMCDEAVKSLPESFDPGVYYGWSKLSDGPTVYKM 79 (132)
Q Consensus 2 s~~ir~~l~~g~i~~a~~l--~py~i~G~Vv~G~~~G~~~lGfPTANl~~~~~~~lp~~~~~GVYa~~~~~~~~~~~~~~ 79 (132)
||+||++|++||++.|++| |||+++|+|+||+++|| +||||||||.++. ..+|+ .|||++|+.+. ++ .|++
T Consensus 163 St~IR~~L~~gdl~~A~~lLG~py~i~G~Vv~G~~~Gr-~lGfPTaNi~~~~-~~~~~---~GVYav~v~~~-~~-~~~g 235 (304)
T COG0196 163 STAIRQALREGDLEEANKLLGRPYSIEGKVVHGQKLGR-TLGFPTANIYLKD-NVLPA---FGVYAVRVKLD-GG-VYPG 235 (304)
T ss_pred hHHHHHHHhcCCHHHHHHhcCCCeEEEEEEEccccccc-ccCCCcccccccc-ccccC---CeeEEEEEEEC-Cc-cccc
Confidence 8999999999999999999 99999999999999995 7999999999876 55666 89999999995 44 5999
Q ss_pred EEEecCCCccCCCceEEEEEEccccCCCCCCCeEEEEEeeecCCCCCCCCCCC
Q psy7973 80 VMSIGWNPFYKNKKKSMEVHIIHEFGRDLYDLTLSICVLGYIRPELDFNSLGT 132 (132)
Q Consensus 80 v~niG~~Ptf~~~~~~iEvhil~df~~dlYg~~i~v~~~~~iR~e~kF~s~~~ 132 (132)
|+|||+||||++...++|+|+| ||++|+||+.++|.|++|||+|+||+|+|+
T Consensus 236 v~~vG~rpt~~~~~~~lEvhi~-Df~~dlYG~~i~v~~~~~iR~e~kF~s~d~ 287 (304)
T COG0196 236 VANVGYRPTVDGSERSLEVHIL-DFNGDLYGERVKVRFLKFIRDEKKFDSLDE 287 (304)
T ss_pred eEEecccccccCCeeEEEEEEe-cccccccCceEEEEEhhhcccccCCCCHHH
Confidence 9999999999988899999999 899999999999999999999999999875
No 5
>PLN02940 riboflavin kinase
Probab=100.00 E-value=4e-39 Score=267.89 Aligned_cols=110 Identities=52% Similarity=1.013 Sum_probs=98.1
Q ss_pred CCeEEEEEEEccCCCCccccCceeecccCCccc-cCCCCCCCceEEEEEEEcCCCeEEEEEEEecCCCccCCCceEEEEE
Q psy7973 21 YPYFTKGIIVKGFGRGSKELGIPTANMCDEAVK-SLPESFDPGVYYGWSKLSDGPTVYKMVMSIGWNPFYKNKKKSMEVH 99 (132)
Q Consensus 21 ~py~i~G~Vv~G~~~G~~~lGfPTANl~~~~~~-~lp~~~~~GVYa~~~~~~~~~~~~~~v~niG~~Ptf~~~~~~iEvh 99 (132)
|||+++|+|+||+|+||+.||||||||.++... .+|. +..|||++|+.++++. +|+||+|||+||||++++.++|+|
T Consensus 237 ~~y~~~G~Vv~G~~~G~~~lg~PTaNl~~~~~~~~~~~-p~~GVY~~~~~~~~~~-~~~~v~niG~~Pt~~~~~~~~E~~ 314 (382)
T PLN02940 237 EPWHIGGPVIKGFGRGSKVLGIPTANLSTENYSDVLSE-HPSGVYFGWAGLSTRG-VYKMVMSIGWNPYFNNTEKTIEPW 314 (382)
T ss_pred CCEEEEEEEEeCCccCcccCCCCcccCCcchhhhhcCC-CCCEEEEEEEEECCCc-eEEEEEEecCCCccCCCccEEEEE
Confidence 999999999999999975589999999987542 5641 2289999999995445 899999999999998777899999
Q ss_pred EccccCCCCCCCeEEEEEeeecCCCCCCCCCCC
Q psy7973 100 IIHEFGRDLYDLTLSICVLGYIRPELDFNSLGT 132 (132)
Q Consensus 100 il~df~~dlYg~~i~v~~~~~iR~e~kF~s~~~ 132 (132)
|||||++|+||++|+|+|++|||+|+||+|+||
T Consensus 315 i~~df~~dlyg~~i~v~~~~~lR~e~kF~~~~~ 347 (382)
T PLN02940 315 LLHDFGEDFYGEELRLVIVGYIRPEANFPSLES 347 (382)
T ss_pred EeCCCCCCCCCCeEEEEEehhcCCCCCCCCHHH
Confidence 999999999999999999999999999999875
No 6
>KOG3110|consensus
Probab=100.00 E-value=1.1e-38 Score=231.21 Aligned_cols=111 Identities=60% Similarity=1.177 Sum_probs=104.4
Q ss_pred CCeEEEEEEEccCCCCccccCceeecccCCccccCCCCCCCceEEEEEEEcCCCeEEEEEEEecCCCccCCCceEEEEEE
Q psy7973 21 YPYFTKGIIVKGFGRGSKELGIPTANMCDEAVKSLPESFDPGVYYGWSKLSDGPTVYKMVMSIGWNPFYKNKKKSMEVHI 100 (132)
Q Consensus 21 ~py~i~G~Vv~G~~~G~~~lGfPTANl~~~~~~~lp~~~~~GVYa~~~~~~~~~~~~~~v~niG~~Ptf~~~~~~iEvhi 100 (132)
.||.+.|.||+|+|||+++||+||||++.+.-..+|.++..|||++|+.++.++ +++-|+||||||.++++.+++|+|+
T Consensus 11 ~P~~~~g~VVrGFGRGskeLGiPTAN~~~~~v~~l~~~l~~GvYfG~A~v~~~~-v~kMvmSIGwNP~Y~N~~Kt~E~hl 89 (153)
T KOG3110|consen 11 LPLFFGGEVVRGFGRGSKELGIPTANFPENVVPKLPEDLPSGVYFGWAHVDKGD-VFKMVMSIGWNPYYKNKKKTMELHL 89 (153)
T ss_pred CCEEecCeEEEecCCCccccCCccCCCCHHHHhcccccCCCceEEEeeeecCCC-ceeEEEEcccCcccCCcccceeeee
Confidence 899999999999999999999999999876555677788899999999997677 9999999999999999999999999
Q ss_pred ccccCCCCCCCeEEEEEeeecCCCCCCCCCCC
Q psy7973 101 IHEFGRDLYDLTLSICVLGYIRPELDFNSLGT 132 (132)
Q Consensus 101 l~df~~dlYg~~i~v~~~~~iR~e~kF~s~~~ 132 (132)
+|||..|+||+++++.+++|||||+.|+|+|+
T Consensus 90 ih~f~~DFYge~l~~~IvGyiRpe~nf~sles 121 (153)
T KOG3110|consen 90 IHDFGEDFYGETLKVIIVGYIRPELNFDSLES 121 (153)
T ss_pred ehhcccchhhheeeEEEEEeeccccCcchHHH
Confidence 99999999999999999999999999999874
No 7
>PRK07143 hypothetical protein; Provisional
Probab=100.00 E-value=6e-35 Score=235.05 Aligned_cols=102 Identities=15% Similarity=0.169 Sum_probs=96.6
Q ss_pred cHHHHHHHHCCChhhhhcc--CCeEEEEEEEccCCCCccccCceeecccCCccccCCCCCCCceEEEEEEEcCCCeEEEE
Q psy7973 2 SQSANIIKQNGVCHQAKDK--YPYFTKGIIVKGFGRGSKELGIPTANMCDEAVKSLPESFDPGVYYGWSKLSDGPTVYKM 79 (132)
Q Consensus 2 s~~ir~~l~~g~i~~a~~l--~py~i~G~Vv~G~~~G~~~lGfPTANl~~~~~~~lp~~~~~GVYa~~~~~~~~~~~~~~ 79 (132)
||+||++|++||+++|++| |||+++|+|+|| |||.++++.++|+ .|||++++.++ +. +|+|
T Consensus 152 ST~IR~~l~~G~i~~A~~lLGr~y~i~G~V~~G------------aNl~~~~~~~~P~---~GVYa~~v~~~-~~-~y~~ 214 (279)
T PRK07143 152 TSLLKEFIEFGDIELLNSLLLYNYSISITINKN------------FEFTYPQNIIKLH---AGIYLAYVVIN-NF-KYHG 214 (279)
T ss_pred HHHHHHHHHcCCHHHHHHHcCCCcEEEEEEECC------------eEeCCCcCcCCCC---CcEEEEEEEEC-CE-EEEE
Confidence 8999999999999999999 999999999998 9999876677888 89999999984 66 8999
Q ss_pred EEEecCCCccCCCceEEEEEEccccCC--CCCCCeEEEEEeeecCCCCCCCC
Q psy7973 80 VMSIGWNPFYKNKKKSMEVHIIHEFGR--DLYDLTLSICVLGYIRPELDFNS 129 (132)
Q Consensus 80 v~niG~~Ptf~~~~~~iEvhil~df~~--dlYg~~i~v~~~~~iR~e~kF~s 129 (132)
|+|||.||| +|+||| ||++ |+|| +|+|+|++|||+|+||+|
T Consensus 215 v~niG~~PT-------iE~hil-df~~~~dlYg-~i~v~f~~~iR~e~kF~s 257 (279)
T PRK07143 215 ILKINFNNK-------NKIKFF-DFDLIINKYQ-EIFIEIVKEIRIISSNED 257 (279)
T ss_pred EEEecCCce-------EEEEEe-cCCCCcCCCC-EEEEEEhhccCCCcCCCc
Confidence 999999999 999999 9999 8999 999999999999999998
No 8
>PF04505 Dispanin: Interferon-induced transmembrane protein; InterPro: IPR007593 This family includes the human leukocyte antigen CD225, which is an interferon inducible transmembrane protein, and is associated with interferon induced cell growth suppression [].; GO: 0009607 response to biotic stimulus, 0016021 integral to membrane
Probab=68.43 E-value=3.3 Score=27.57 Aligned_cols=20 Identities=15% Similarity=0.051 Sum_probs=17.9
Q ss_pred CcHHHHHHHHCCChhhhhcc
Q psy7973 1 MSQSANIIKQNGVCHQAKDK 20 (132)
Q Consensus 1 ~s~~ir~~l~~g~i~~a~~l 20 (132)
+|+++|++.+.||+++|++-
T Consensus 40 ~s~kv~~~~~~Gd~~~A~~a 59 (82)
T PF04505_consen 40 YSSKVRSRYAAGDYEGARRA 59 (82)
T ss_pred echhhHHHHHCCCHHHHHHH
Confidence 58999999999999999764
No 9
>PF08057 Ery_res_leader2: Erythromycin resistance leader peptide; InterPro: IPR012559 This family consists of erythromycin resistance gene leader peptides. These leader peptides are involved in the transcriptional attenuation control of the synthesis of the macrolide-lincosamide -streptogramin B resistance protein. It acts as a transcriptional attenuator, in contrast to other inducible erm genes. The mRNA leader sequence can fold in either of two mutually exclusive conformations, one of which is postulated to form in the absence of induction, and to contain two rho factor-independent terminators [].; GO: 0046677 response to antibiotic
Probab=61.26 E-value=2.7 Score=18.88 Aligned_cols=7 Identities=57% Similarity=0.795 Sum_probs=6.1
Q ss_pred cCceeec
Q psy7973 40 LGIPTAN 46 (132)
Q Consensus 40 lGfPTAN 46 (132)
|.|||.|
T Consensus 7 lrfptln 13 (14)
T PF08057_consen 7 LRFPTLN 13 (14)
T ss_pred eeccccC
Confidence 7899988
No 10
>PF05801 DUF840: Lagovirus protein of unknown function (DUF840); InterPro: IPR008558 This family consists of several Lagovirus sequences of unknown function, largely from Oryctolagus cuniculus hemorrhagic disease virus.
Probab=48.24 E-value=10 Score=26.27 Aligned_cols=42 Identities=26% Similarity=0.371 Sum_probs=33.7
Q ss_pred HHHHHCCChhhhhcc-----CCeEEEEEEEccCCCCccccCceeecccCC
Q psy7973 6 NIIKQNGVCHQAKDK-----YPYFTKGIIVKGFGRGSKELGIPTANMCDE 50 (132)
Q Consensus 6 r~~l~~g~i~~a~~l-----~py~i~G~Vv~G~~~G~~~lGfPTANl~~~ 50 (132)
++||.+|-+-+|++| .|+.+.+.+|.|.+.. -++.--|+.-+
T Consensus 29 kqalenglvlka~ql~rlgfnp~evk~~ivng~~~n---~~~rlsnmhnd 75 (114)
T PF05801_consen 29 KQALENGLVLKANQLSRLGFNPNEVKNVIVNGNGFN---SNVRLSNMHND 75 (114)
T ss_pred HHHHhcCeeeehhhhhhcCCCHhHhheeEEeCCCCc---cceeeeccccc
Confidence 578999999999888 8999999999987654 36777777643
No 11
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=48.07 E-value=11 Score=31.16 Aligned_cols=18 Identities=17% Similarity=0.113 Sum_probs=16.5
Q ss_pred HHHHHHHHCCChhhhhcc
Q psy7973 3 QSANIIKQNGVCHQAKDK 20 (132)
Q Consensus 3 ~~ir~~l~~g~i~~a~~l 20 (132)
++|++|+++|||++|.+|
T Consensus 262 ~aI~~AVk~gDi~KAL~L 279 (303)
T PRK10564 262 QAIKQAVKKGDVDKALKL 279 (303)
T ss_pred HHHHHHHHcCCHHHHHHH
Confidence 689999999999999876
No 12
>smart00668 CTLH C-terminal to LisH motif. Alpha-helical motif of unknown function.
Probab=44.85 E-value=18 Score=21.24 Aligned_cols=18 Identities=11% Similarity=0.045 Sum_probs=15.5
Q ss_pred HHHHHHHHCCChhhhhcc
Q psy7973 3 QSANIIKQNGVCHQAKDK 20 (132)
Q Consensus 3 ~~ir~~l~~g~i~~a~~l 20 (132)
..|+++|..||++.|-+.
T Consensus 6 ~~i~~~i~~g~~~~a~~~ 23 (58)
T smart00668 6 KRIRELILKGDWDEALEW 23 (58)
T ss_pred HHHHHHHHcCCHHHHHHH
Confidence 479999999999999655
No 13
>TIGR02837 spore_II_R stage II sporulation protein R. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage II sporulation protein R.
Probab=36.91 E-value=53 Score=25.02 Aligned_cols=47 Identities=23% Similarity=0.267 Sum_probs=28.4
Q ss_pred CCeEEEEEEEccCCCCccccCceeecccCCccccCCCCCCCceE-EEEEEEcCCCe-EEEEEEE
Q psy7973 21 YPYFTKGIIVKGFGRGSKELGIPTANMCDEAVKSLPESFDPGVY-YGWSKLSDGPT-VYKMVMS 82 (132)
Q Consensus 21 ~py~i~G~Vv~G~~~G~~~lGfPTANl~~~~~~~lp~~~~~GVY-a~~~~~~~~~~-~~~~v~n 82 (132)
..|.++-.+ | + .-|||=.- .+..+|. |.| |.++.++.+++ .|++|+.
T Consensus 105 ~~y~v~v~~------~-~-~~FPtK~Y---G~~~~Pa----G~YeAlrI~IG~g~G~NWWCVlf 153 (168)
T TIGR02837 105 ADYKVRVEL------G-K-YSFPTKLY---GNIVLPA----GEYEALRILIGEGAGANWWCVVF 153 (168)
T ss_pred CCCCeEEEE------E-E-EeCCCccc---CCEeccC----CceEEEEEEecCcCCcceEEEec
Confidence 566666544 3 2 56998533 3467884 999 67777754432 5666653
No 14
>cd03123 alpha_CA_VI_IX_XII_XIV Carbonic anhydrase alpha, isozymes VI, IX, XII and XIV. Carbonic anhydrases (CAs) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism: a nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Alpha CAs are mostly monomeric enzymes. The zinc ion is complexed by three histidine residues. This sub-family comprises the secreted CA VI, which is found in saliva, for example, and the membrane proteins CA IX, XII, and XIV.
Probab=35.63 E-value=22 Score=28.14 Aligned_cols=27 Identities=26% Similarity=0.466 Sum_probs=20.9
Q ss_pred ecCCCccCCCceEEEEEEccccCCCCCC
Q psy7973 83 IGWNPFYKNKKKSMEVHIIHEFGRDLYD 110 (132)
Q Consensus 83 iG~~Ptf~~~~~~iEvhil~df~~dlYg 110 (132)
-|..-++++....+|+||.| ++.+.|+
T Consensus 92 ~gSEH~idG~~yp~E~HlVh-~n~~~y~ 118 (248)
T cd03123 92 SGSEHTIDGIRFAAELHIVH-YNSDKYS 118 (248)
T ss_pred CCccceecCccCcceeEEEE-EcccccC
Confidence 46666777778899999997 7776664
No 15
>PF14498 Glyco_hyd_65N_2: Glycosyl hydrolase family 65, N-terminal domain; PDB: 2EAE_A 2EAB_B 2EAC_A 2EAD_B 2RDY_A.
Probab=31.72 E-value=23 Score=27.39 Aligned_cols=18 Identities=11% Similarity=0.101 Sum_probs=15.7
Q ss_pred HHHHHHHHCCChhhhhcc
Q psy7973 3 QSANIIKQNGVCHQAKDK 20 (132)
Q Consensus 3 ~~ir~~l~~g~i~~a~~l 20 (132)
.+||++|.+|+.++|++|
T Consensus 59 ~~iR~l~~~g~~~~A~~l 76 (236)
T PF14498_consen 59 PEIRELLFEGDYEEAEEL 76 (236)
T ss_dssp HHHHHHHHTT-CCHHHHH
T ss_pred HHHHHHHHcCChhHHHHH
Confidence 379999999999999998
No 16
>cd03126 alpha_CA_XII_XIV Carbonic anhydrase alpha, isozymes XII and XIV. Carbonic anhydrases (CAs) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism: a nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Most alpha CAs are monomeric enzymes. The zinc ion is complexed by three histidine residues. This sub-family comprises the membrane proteins CA XII and XIV.
Probab=29.76 E-value=35 Score=26.97 Aligned_cols=27 Identities=30% Similarity=0.475 Sum_probs=21.0
Q ss_pred ecCCCccCCCceEEEEEEccccCCCCCC
Q psy7973 83 IGWNPFYKNKKKSMEVHIIHEFGRDLYD 110 (132)
Q Consensus 83 iG~~Ptf~~~~~~iEvhil~df~~dlYg 110 (132)
-|..-++++....+|+||.| ++.+.|+
T Consensus 91 ~gSEH~idG~~y~~E~HlVH-~n~~~y~ 117 (249)
T cd03126 91 EGSEHTISGKHFAAELHIVH-YNSDKYP 117 (249)
T ss_pred CCceeeecCcccCceEEEEE-ecCccCC
Confidence 46666777778899999997 7777775
No 17
>cd03120 alpha_CARP_VIII Carbonic anhydrase alpha related protein, group VIII. Carbonic anhydrase related proteins (CARPs) are sequence similar to carbonic anhydrases. Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism. CARPs have lost conserved histidines involved in zinc binding and consequently their catalytic activity. CARP VIII may play roles in various biological processes of the central nervous system, and could be involved in protein-protein interactions. CARP VIII has been shown to bind inositol 1,4,5-triphosphate (IP3) receptor type I (IP3RI), reducing the affinity of the receptor for IP3. IP3RI is an intracellular IP3-gated Ca2+ channel located on intracellular Ca2+ stores. IP3RI converts IP3 signaling into Ca2+ signaling thereby participating in a variety of cell functions.
Probab=27.89 E-value=41 Score=26.70 Aligned_cols=27 Identities=33% Similarity=0.490 Sum_probs=20.2
Q ss_pred ecCCCccCCCceEEEEEEccccCCCCCC
Q psy7973 83 IGWNPFYKNKKKSMEVHIIHEFGRDLYD 110 (132)
Q Consensus 83 iG~~Ptf~~~~~~iEvhil~df~~dlYg 110 (132)
.|..-++++....+|+||.| ++.+.|+
T Consensus 92 ~gSEH~idG~~yp~E~HlVH-~n~~~y~ 118 (256)
T cd03120 92 RGSEHTVNFKAFPMELHLIH-WNSTLYS 118 (256)
T ss_pred CCCceeecCccccceEEEEE-ecCcccC
Confidence 45666677777889999997 6776664
No 18
>PF10607 CLTH: CTLH/CRA C-terminal to LisH motif domain; InterPro: IPR019589 This entry represents the CRA (or CT11-RanBPM) domain, which is a protein-protein interaction domain present in crown eukaryotes (plants, animals, fungi) and which is found in Ran-binding proteins such as Ran-binding protein 9 (RanBP9 or RanBPM) and RanBP10. RanBPM is a scaffolding protein important in regulating cellular function in both the immune system and the nervous system, and may act as an adapter protein to couple membrane receptors to intracellular signaling pathways. This domain is at the C terminus of the proteins and is the binding domain for the CRA motif, which is comprised of approximately 100 amino acids at the C-terminal of RanBPM. It was found to be important for the interaction of RanBPM with fragile X mental retardation protein (FMRP), but its functional significance has yet to be determined [].
Probab=26.95 E-value=49 Score=23.17 Aligned_cols=18 Identities=17% Similarity=0.017 Sum_probs=15.4
Q ss_pred HHHHHHHHCCChhhhhcc
Q psy7973 3 QSANIIKQNGVCHQAKDK 20 (132)
Q Consensus 3 ~~ir~~l~~g~i~~a~~l 20 (132)
..|+++|.+||++.|-..
T Consensus 6 ~~I~~~I~~g~i~~Ai~w 23 (145)
T PF10607_consen 6 KKIRQAILNGDIDPAIEW 23 (145)
T ss_pred HHHHHHHHcCCHHHHHHH
Confidence 479999999999999655
No 19
>cd03121 alpha_CARP_X_XI_like Carbonic anhydrase alpha related protein: groups X, XI and related proteins. This subgroup contains carbonic anhydrase related proteins (CARPs) X and XI, which have been implicated in various biological processes of the central nervous system. CARPs are sequence similar to carbonic anhydrases. Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism. CARPs have lost conserved histidines involved in zinc binding and consequently their catalytic activity. CARP XI plays a role in the development of gastrointestinal stromal tumors.
Probab=25.71 E-value=47 Score=26.35 Aligned_cols=27 Identities=26% Similarity=0.420 Sum_probs=20.1
Q ss_pred ecCCCccCCCceEEEEEEccccCCCCCC
Q psy7973 83 IGWNPFYKNKKKSMEVHIIHEFGRDLYD 110 (132)
Q Consensus 83 iG~~Ptf~~~~~~iEvhil~df~~dlYg 110 (132)
.|..-++++...-+|+||.| ++.+.|+
T Consensus 95 ~gSEH~idG~~yp~E~HlVH-~n~~~y~ 121 (256)
T cd03121 95 QGSEHTVNGQAFPGEVQLIH-YNSELYP 121 (256)
T ss_pred CCCceeeCCcccCceEEEEE-EcccccC
Confidence 35666667777889999997 6777775
No 20
>KOG0382|consensus
Probab=24.96 E-value=46 Score=26.86 Aligned_cols=26 Identities=19% Similarity=0.473 Sum_probs=18.8
Q ss_pred ecCCCccCCCceEEEEEEccccCCCCCC
Q psy7973 83 IGWNPFYKNKKKSMEVHIIHEFGRDLYD 110 (132)
Q Consensus 83 iG~~Ptf~~~~~~iEvhil~df~~dlYg 110 (132)
-|.--|.++.+..+|.|++| ++ +.|+
T Consensus 106 ~GSEHti~g~~f~~ElHlVH-~n-~~y~ 131 (262)
T KOG0382|consen 106 KGSEHTINGRRFPAELHLVH-WN-TKYE 131 (262)
T ss_pred CCCceecCCeecccEEEEEE-ec-cccC
Confidence 46666777777889999997 66 5553
No 21
>PF09551 Spore_II_R: Stage II sporulation protein R (spore_II_R); InterPro: IPR014202 This entry is designated stage II sporulation protein R. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species. SpoIIR is a signalling protein that links the activation of sigma E to the transcriptional activity of sigma F during sporulation [, ].
Probab=24.68 E-value=1.1e+02 Score=22.29 Aligned_cols=36 Identities=22% Similarity=0.274 Sum_probs=22.6
Q ss_pred cCceeecccCCccccCCCCCCCceE-EEEEEEcCCCe-EEEEEEE
Q psy7973 40 LGIPTANMCDEAVKSLPESFDPGVY-YGWSKLSDGPT-VYKMVMS 82 (132)
Q Consensus 40 lGfPTANl~~~~~~~lp~~~~~GVY-a~~~~~~~~~~-~~~~v~n 82 (132)
.-|||=-- .+..+|. |.| |.++.++.+++ .|++|+.
T Consensus 81 ~~FPtK~Y---G~~~~Pa----G~YeAlrI~IG~g~G~NWWCVLf 118 (130)
T PF09551_consen 81 FYFPTKTY---GDIVLPA----GEYEALRITIGEGKGHNWWCVLF 118 (130)
T ss_pred eeCCCceE---CCEeccC----CceEEEEEEecCccCcceEEEec
Confidence 45888644 3467884 999 66777754332 5666653
No 22
>cd03118 alpha_CA_V Carbonic anhydrase alpha, CA isozyme V_like subgroup. Carbonic anhydrases (CAs) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism: a nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. Most alpha CAs are monomeric enzymes. The zinc ion is complexed by three histidines. This vertebrate subgroup comprises isozyme V. CA V is the mitochondrial isozyme, which may play a role in gluconeogenesis and ureagenesis and possibly also in lipogenesis.
Probab=24.45 E-value=42 Score=26.30 Aligned_cols=26 Identities=19% Similarity=0.406 Sum_probs=20.1
Q ss_pred cCCCccCCCceEEEEEEccccCCCCCC
Q psy7973 84 GWNPFYKNKKKSMEVHIIHEFGRDLYD 110 (132)
Q Consensus 84 G~~Ptf~~~~~~iEvhil~df~~dlYg 110 (132)
|..-++++....+|+|+.| ++.+.|+
T Consensus 80 gSEH~idg~~~p~E~HlVH-~n~~~y~ 105 (236)
T cd03118 80 GSEHTVDGHTYPAELHLVH-WNSVKYE 105 (236)
T ss_pred CCceEECCEeccceeeEEE-EcccccC
Confidence 6666777777889999997 7776774
No 23
>PF04699 P16-Arc: ARP2/3 complex 16 kDa subunit (p16-Arc); InterPro: IPR006789 The Arp2/3 protein complex has been implicated in the control of actin polymerisation. The human complex consists of seven subunits which include the actin related proteins Arp2 and Arp3, and five others referred to as p41-Arc, p34-Arc, p21-Arc, p20-Arc, and p16-Arc. The precise function of p16-Arc is currently unknown. Its structure consists of a single domain containing a bundle of seven alpha helices [, ].; GO: 0030833 regulation of actin filament polymerization, 0005856 cytoskeleton; PDB: 3DWL_G 1TYQ_G 1U2V_G 2P9U_G 2P9L_G 1K8K_G 3DXM_G 2P9N_G 3DXK_G 2P9I_G ....
Probab=22.91 E-value=48 Score=24.66 Aligned_cols=19 Identities=16% Similarity=0.139 Sum_probs=15.3
Q ss_pred cHHHHHHHHCCChhhhhcc
Q psy7973 2 SQSANIIKQNGVCHQAKDK 20 (132)
Q Consensus 2 s~~ir~~l~~g~i~~a~~l 20 (132)
.+.||.+|+.||+.+|-+.
T Consensus 40 ~~qvr~ll~~g~~~~ALk~ 58 (152)
T PF04699_consen 40 EQQVRQLLSSGDNEEALKA 58 (152)
T ss_dssp HHHHHHHHHCT-HHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHH
Confidence 4689999999999999655
No 24
>PRK14132 riboflavin kinase; Provisional
Probab=21.15 E-value=67 Score=23.28 Aligned_cols=99 Identities=18% Similarity=0.090 Sum_probs=50.1
Q ss_pred EEEEEEEccCCCCcccc-------------Cc---e-eecccCCccccCCCCCCCceEEEEEEEcCCCeEEEEEEEecCC
Q psy7973 24 FTKGIIVKGFGRGSKEL-------------GI---P-TANMCDEAVKSLPESFDPGVYYGWSKLSDGPTVYKMVMSIGWN 86 (132)
Q Consensus 24 ~i~G~Vv~G~~~G~~~l-------------Gf---P-TANl~~~~~~~lp~~~~~GVYa~~~~~~~~~~~~~~v~niG~~ 86 (132)
.+.|+|+.|.|-|+.-+ || | |.|+.++++..+ .. ..++-.--..+++.. .| ++.-. .
T Consensus 2 ~l~G~VvSGlGEG~yyvsl~~Y~~qf~~~LGf~PyPGTLNi~l~~~~~~-~~-~~~i~i~gf~~~~~r-~f-Gv~~~--~ 75 (126)
T PRK14132 2 KIFGRVVSGLGEGAYFLSLPPYKEKFKEKLGFTPYEGTLNIKLGENFNI-DI-FNYIETEDFEINGKK-FF-GVKVL--P 75 (126)
T ss_pred EEEEEEecccccceEEEeCHHHHHHHHHHhCCcCCCCcEEEEecchhhh-hh-CCCEeecCceecCCc-eE-EEEEE--E
Confidence 58999999999997533 33 2 999987653222 10 123221111111111 22 22111 0
Q ss_pred CccCCCceEEEEEEccccCCCCCCC-eEEEEEeeecCCCCCCCC
Q psy7973 87 PFYKNKKKSMEVHIIHEFGRDLYDL-TLSICVLGYIRPELDFNS 129 (132)
Q Consensus 87 Ptf~~~~~~iEvhil~df~~dlYg~-~i~v~~~~~iR~e~kF~s 129 (132)
.+.-+....+++|++ --...-|+. .++|.==..||++....+
T Consensus 76 ~~i~~~~~~i~~aiV-~P~rT~h~~~~lEiIAp~~LR~~L~LkD 118 (126)
T PRK14132 76 IAILNKGKEIDGAIV-FPKKTDHSKNVLEIIAPIKLRKFLNLKD 118 (126)
T ss_pred EEEecCCCceeEEEE-EeccCCCCCCeEEEECCcchHhhcCCCC
Confidence 111111235778877 334455644 567666677777765544
No 25
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=20.52 E-value=66 Score=16.07 Aligned_cols=17 Identities=18% Similarity=0.098 Sum_probs=13.6
Q ss_pred HHHHHHHCCChhhhhcc
Q psy7973 4 SANIIKQNGVCHQAKDK 20 (132)
Q Consensus 4 ~ir~~l~~g~i~~a~~l 20 (132)
..+.++..||.++|..+
T Consensus 7 la~~~~~~G~~~eA~~~ 23 (26)
T PF07721_consen 7 LARALLAQGDPDEAERL 23 (26)
T ss_pred HHHHHHHcCCHHHHHHH
Confidence 35678899999999765
No 26
>PF00567 TUDOR: Tudor domain; InterPro: IPR008191 There are multiple copies of this domain in the Drosophila melanogaster tudor protein and it has been identified in several RNA-binding proteins []. Although the function of this domain is unknown, in Drosophila melanogaster the tudor protein is required during oogenesis for the formation of primordial germ cells and for normal abdominal segmentation [].; PDB: 3NTI_A 3NTK_B 3NTH_A 2DIQ_A 3FDR_A 3PNW_O 3S6W_A 3PMT_A 2WAC_A 2O4X_A ....
Probab=20.07 E-value=1.2e+02 Score=19.60 Aligned_cols=35 Identities=20% Similarity=0.318 Sum_probs=22.3
Q ss_pred ceEEEEEEEcCCCeEEEEEEEecCCCccCCCceEEEEEEccccC
Q psy7973 62 GVYYGWSKLSDGPTVYKMVMSIGWNPFYKNKKKSMEVHIIHEFG 105 (132)
Q Consensus 62 GVYa~~~~~~~~~~~~~~v~niG~~Ptf~~~~~~iEvhil~df~ 105 (132)
+.+.+.+.. ++. ||.|.+ +....+..++++++ ||.
T Consensus 56 ~~~~~~~~~-~~~-w~Ra~I------~~~~~~~~~~V~~i-D~G 90 (121)
T PF00567_consen 56 EGCLCVVSE-DGR-WYRAVI------TVDIDENQYKVFLI-DYG 90 (121)
T ss_dssp EEEEEEETT-TSE-EEEEEE------EEEECTTEEEEEET-TTT
T ss_pred CEEEEEEec-CCc-eeeEEE------EEecccceeEEEEE-ecC
Confidence 344444444 355 999998 22235688999999 654
No 27
>cd03149 alpha_CA_VII Carbonic anhydrase alpha, CA isozyme VII_like subgroup. Carbonic anhydrases (CAs) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism: a nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. Most alpha CAs are monomeric enzymes. The zinc ion is complexed by three histidines. This vertebrate subgroup comprises isozyme VII. CA VII is the most active cytosolic enzyme after CA II, and may be highly expressed in the brain. Human CA VII may be a target of antiepileptic sulfonamides/sulfamates.
Probab=20.04 E-value=58 Score=25.49 Aligned_cols=27 Identities=22% Similarity=0.388 Sum_probs=19.7
Q ss_pred ecCCCccCCCceEEEEEEccccCCCCCC
Q psy7973 83 IGWNPFYKNKKKSMEVHIIHEFGRDLYD 110 (132)
Q Consensus 83 iG~~Ptf~~~~~~iEvhil~df~~dlYg 110 (132)
-|..-++++...-+|+|+.| ++.+.|+
T Consensus 79 ~gSEH~idg~~yp~E~HlVH-~n~~~y~ 105 (236)
T cd03149 79 SGSEHTVDGKTFPSELHLVH-WNAKKYK 105 (236)
T ss_pred CCCceeecCeeccceeeeeE-ecccccC
Confidence 35555677777889999997 6665664
Done!