RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7973
(132 letters)
>1n08_A Putative riboflavin kinase; phophoryl transferases, flavin
cofactors, metal binding; HET: ADP; 1.60A
{Schizosaccharomyces pombe} SCOP: b.43.5.1 PDB: 1n05_A*
1n07_A* 1n06_A*
Length = 163
Score = 166 bits (423), Expect = 3e-54
Identities = 57/110 (51%), Positives = 78/110 (70%), Gaps = 2/110 (1%)
Query: 21 YPYFTKGIIVKGFGRGSKELGIPTANMCDEAVKSLPESFDPGVYYGWSKLSDGPTVYKMV 80
YP +G +V GFGRGSKELGIPTAN+ ++A++ L D GVY+G++ + V+ MV
Sbjct: 22 YPIRFEGKVVHGFGRGSKELGIPTANISEDAIQELLRYRDSGVYFGYAMVQKR--VFPMV 79
Query: 81 MSIGWNPFYKNKKKSMEVHIIHEFGRDLYDLTLSICVLGYIRPELDFNSL 130
MS+GWNP+YKNK +S EVH+I G D Y+ + + VLGYIRPEL++ L
Sbjct: 80 MSVGWNPYYKNKLRSAEVHLIERQGEDFYEEIMRVIVLGYIRPELNYAGL 129
>1nb0_A Hypothetical protein FLJ11149; beta barrel, transferase; HET: ADP;
1.70A {Homo sapiens} SCOP: b.43.5.1 PDB: 1nb9_A* 1p4m_A*
1q9s_A*
Length = 147
Score = 164 bits (418), Expect = 1e-53
Identities = 61/110 (55%), Positives = 82/110 (74%), Gaps = 1/110 (0%)
Query: 21 YPYFTKGIIVKGFGRGSKELGIPTANMCDEAVKSLPESFDPGVYYGWSKLSDGPTVYKMV 80
PYF +G +V+GFGRGSK+LGIPTAN ++ V +LP G+YYGW+ + G V+KMV
Sbjct: 3 LPYFCRGQVVRGFGRGSKQLGIPTANFPEQVVDNLPADISTGIYYGWASVGSGD-VHKMV 61
Query: 81 MSIGWNPFYKNKKKSMEVHIIHEFGRDLYDLTLSICVLGYIRPELDFNSL 130
+SIGWNP+YKN KKSME HI+H F D Y L++ ++GY+RPE +F+SL
Sbjct: 62 VSIGWNPYYKNTKKSMETHIMHTFKEDFYGEILNVAIVGYLRPEKNFDSL 111
>3bnw_A Riboflavin kinase, putative; APO structure, structural genomics,
structural genomics of P protozoa consortium, SGPP,
transferase; 2.40A {Trypanosoma brucei}
Length = 181
Score = 155 bits (394), Expect = 1e-49
Identities = 45/123 (36%), Positives = 62/123 (50%), Gaps = 8/123 (6%)
Query: 16 QAKDKYPYFTKGIIVKGFGRGSKELGIPTANM-CDEAVKSLPESFDPGVYYGWSKLSDGP 74
Q P+F +G +V G GRG +LG PTAN+ D+ V + + V YGW +S P
Sbjct: 11 QTGSFQPFFLRGKVVHGKGRGGSQLGFPTANIGLDKDVMECLQPYKNLVVYGWGTVSQVP 70
Query: 75 -------TVYKMVMSIGWNPFYKNKKKSMEVHIIHEFGRDLYDLTLSICVLGYIRPELDF 127
Y SIG+N + K ++E + +HEFG D Y + I VLG IR F
Sbjct: 71 GKERESFGPYPFAASIGFNMQFDEKTLTVEPYFLHEFGWDFYGAVVKIIVLGEIRSMGSF 130
Query: 128 NSL 130
+SL
Sbjct: 131 HSL 133
>3op1_A Macrolide-efflux protein; structural genomics, PSI-2, protein
structure initiative, MI center for structural genomics,
MCSG; HET: PEG; 2.49A {Streptococcus pneumoniae}
Length = 308
Score = 99.9 bits (250), Expect = 1e-26
Identities = 31/110 (28%), Positives = 55/110 (50%), Gaps = 7/110 (6%)
Query: 21 YPYFTKGIIVKGFGRGSKELGIPTANMCDEAVKSLPESFDPGVYYGWSKLSDGPTVYKMV 80
P ++G++V G RG + +G PTAN+ +P GVY ++ Y+ +
Sbjct: 188 APLPSRGMVVHGNARG-RTIGYPTANLVLLDRTYMPAD---GVYVVDVEIQRQK--YRAM 241
Query: 81 MSIGWNPFYKNKKKSMEVHIIHEFGRDLYDLTLSICVLGYIRPELDFNSL 130
S+G N + ++ EV+I +F +D+Y T+ + L IR F+S+
Sbjct: 242 ASVGKNVTFDGEEARFEVNIF-DFNQDIYGETVMVYWLDRIRDMTKFDSV 290
>2x0k_A Riboflavin biosynthesis protein RIBF; riboflavin kinase,
nucleotide-binding, transferase, ATP-BIND
multifunctional enzyme; 1.95A {Corynebacterium
ammoniagenes}
Length = 338
Score = 97.2 bits (243), Expect = 2e-25
Identities = 34/120 (28%), Positives = 58/120 (48%), Gaps = 14/120 (11%)
Query: 21 YPYFTKGIIVKGFGRGSKELGIPTANMCDEAVKSLPESFDPGVYYGWSKLSDGPT----- 75
++ G +V+G GRG KELG PTAN +LP GVY GW +
Sbjct: 185 RHFYVTGPVVRGAGRGGKELGFPTANQYFHDTVALPAD---GVYAGWLTILPTEAPVSGN 241
Query: 76 -----VYKMVMSIGWNPFYKNKKKSMEVHIIHEFGRDLYDLTLSICVLGYIRPELDFNSL 130
Y +S+G NP + ++++S+E ++ + DLY + + + ++R F+S+
Sbjct: 242 MEPEVAYAAAISVGTNPTFGDEQRSVESFVL-DRDADLYGHDVKVEFVDHVRAMEKFDSV 300
>1mrz_A Riboflavin kinase/FMN adenylyltransferase; rossmann fold, flavin
binding domain, 6-stranded beta barrel nucleotide
binding domain; HET: CIT; 1.90A {Thermotoga maritima}
SCOP: b.43.5.1 c.26.1.3 PDB: 1s4m_A* 1t6x_A* 1t6y_A*
1t6z_A* 2i1l_A
Length = 293
Score = 95.6 bits (239), Expect = 3e-25
Identities = 34/112 (30%), Positives = 53/112 (47%), Gaps = 8/112 (7%)
Query: 21 YPYFTKGIIVKGFGRGSKELGIPTANM-CDEAVKSLPESFDPGVYYGWSKLSDGPTVYKM 79
+ +GI+ K G ++LG PTAN+ + GVY L DG
Sbjct: 158 RYFEIEGIVHKDREFG-RKLGFPTANIDRGNEKLVDLKR---GVYLVRVHLPDG-KKKFG 212
Query: 80 VMSIGWNP-FYKNKKKSMEVHIIHEFGRDLYDLTLSICVLGYIRPELDFNSL 130
VM++G+ P + EV+I+ +F DLY L + VL ++R E F+S+
Sbjct: 213 VMNVGFRPTVGDARNVKYEVYIL-DFEGDLYGQRLKLEVLKFMRDEKKFDSI 263
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 34.3 bits (78), Expect = 0.008
Identities = 21/113 (18%), Positives = 41/113 (36%), Gaps = 43/113 (38%)
Query: 36 GSKELGI--------PTA-NMCDEAVKSLPESFDPGVYYGWSKLSDGPTVYKMVMSIGWN 86
GS+E G+ A ++ + A ++ YG+S + +V++ N
Sbjct: 1625 GSQEQGMGMDLYKTSKAAQDVWNRADNHFKDT------YGFS-------ILDIVIN---N 1668
Query: 87 PFYKNKKKSMEVHIIHEFG-------RDLYD-LTLSICVLGYIRPELDFNSLG 131
P ++ +H FG R+ Y + V G ++ E F +
Sbjct: 1669 P------VNLTIH----FGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEIN 1711
Score = 30.8 bits (69), Expect = 0.13
Identities = 19/124 (15%), Positives = 43/124 (34%), Gaps = 35/124 (28%)
Query: 1 MSQSANIIKQNGVCHQAKDKYPYFTKGIIVKGFGRGSKELGIPTANMCDEAVKSLPESFD 60
+ SA + + + D FT+G+ + + P+ + + S+P S
Sbjct: 188 IKFSAETLSE--LIRTTLDAEKVFTQGLNILEWLEN------PSNTPDKDYLLSIPISC- 238
Query: 61 PGV-------YY------GWS-----KLSDGPTVY-KMV-------MSIGWNPFYKNKKK 94
P + Y G++ G T + + + + W F+ + +K
Sbjct: 239 PLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRK 298
Query: 95 SMEV 98
++ V
Sbjct: 299 AITV 302
Score = 26.9 bits (59), Expect = 2.7
Identities = 12/71 (16%), Positives = 19/71 (26%), Gaps = 34/71 (47%)
Query: 37 SKELGIP-----------------TANMCD---------EAVKSLPES----FDPGVYYG 66
+K++ IP + + D E + F PG G
Sbjct: 452 AKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASG 511
Query: 67 WSKLS----DG 73
L+ DG
Sbjct: 512 LGVLTHRNKDG 522
>2wzr_1 Polyprotein; capsid, RNA replication, RNA-directed RNA polymerase,
nucleotidyltransferase, HOST cytoplasmic vesicle, capsid
protein; 3.00A {Foot-and-mouth disease virus}
Length = 219
Score = 27.3 bits (60), Expect = 1.3
Identities = 9/68 (13%), Positives = 16/68 (23%), Gaps = 4/68 (5%)
Query: 56 PESFDPGVYYGWSKLSDGPTVYKMVMSIGWNPFYKNKKKSMEVHIIHEFGRDLYDLTLSI 115
P VY G K T + + + +G + +
Sbjct: 123 PHRVLATVYNGDCKYKPTGTAPRENIRGDLATLAARIASETHIPTTFNYGMIYTQAEVDV 182
Query: 116 CVLGYIRP 123
Y+R
Sbjct: 183 ----YLRM 186
>3mwd_B ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid,
lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB:
3mwe_B*
Length = 334
Score = 27.3 bits (61), Expect = 1.5
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 26 KGIIVKGFGRGSKELGIPTANMCDEAVKSLPE 57
G + F G KE+ IP +A++ PE
Sbjct: 48 TGDHKQKFYWGHKEILIPVFKNMADAMRKHPE 79
>1ypx_A Putative vitamin-B12 independent methionine synth protein;
alpha-beta protein; 2.60A {Listeria monocytogenes}
Length = 375
Score = 26.6 bits (59), Expect = 3.0
Identities = 6/41 (14%), Positives = 13/41 (31%), Gaps = 2/41 (4%)
Query: 73 GPTVYKMVMSIGWNPFYKNKKKSME--VHIIHEFGRDLYDL 111
P + I + P+ + +K + + YD
Sbjct: 139 SPAMLHYRGDIEYQPYLDDAEKFANDLATAYQKAIQAFYDA 179
>1y2k_A DPDE3, PDE43, CAMP-specific 3',5'-cyclic phosphodiesterase 4D;
PDE4D, pyrazole, hydrolase; HET: 7DE; 1.36A {Homo
sapiens} SCOP: a.211.1.2 PDB: 1xon_A* 1xoq_A* 1xom_A*
1xor_A* 1y2c_A* 1y2d_A* 1y2e_A* 1y2b_A* 3iak_A* 3k4s_A*
1tbb_A* 1tb7_A* 3sl5_A* 3sl4_A* 2fm5_A* 3sl3_A* 2fm0_A*
3sl6_A* 3sl8_A* 1oyn_A* ...
Length = 349
Score = 26.3 bits (58), Expect = 4.0
Identities = 7/21 (33%), Positives = 13/21 (61%)
Query: 38 KELGIPTANMCDEAVKSLPES 58
+E G+ + MCD+ S+ +S
Sbjct: 284 RERGMEISPMCDKHNASVEKS 304
>1f0j_A PDE4B, phosphodiesterase 4B; PDE phosphodiesterase, hydrolase;
1.77A {Homo sapiens} SCOP: a.211.1.2 PDB: 1ro6_A*
1ro9_A* 1ror_A* 3hmv_A* 1tb5_A* 1xm6_A* 1xlx_A* 1xm4_A*
1xlz_A* 1xmu_A* 1xmy_A* 1xn0_A* 1xos_A* 1xot_B* 1y2h_A*
1y2j_A* 3kkt_A* 3g4i_A* 3g4k_A* 3g4l_A* ...
Length = 377
Score = 25.6 bits (56), Expect = 6.1
Identities = 7/21 (33%), Positives = 13/21 (61%)
Query: 38 KELGIPTANMCDEAVKSLPES 58
+E G+ + MCD+ S+ +S
Sbjct: 271 RERGMEISPMCDKHTASVEKS 291
>1taz_A Calcium/calmodulin-dependent 3',5'-cyclic nucleot phosphodiesterase
1B; PDE1B, hydrolase; HET: CME; 1.77A {Homo sapiens}
SCOP: a.211.1.2
Length = 365
Score = 25.6 bits (56), Expect = 6.4
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 38 KELGIPTANMCDEAVKSLPES 58
ELG+P + +CD + +S
Sbjct: 259 AELGLPFSPLCDRTSTLVAQS 279
>1zkl_A HCP1, TM22, high-affinity CAMP-specific 3',5'-cyclic
phosphodiesterase 7A; PDE, hydrolase; HET: IBM; 1.67A
{Homo sapiens} PDB: 3g3n_A*
Length = 353
Score = 25.5 bits (56), Expect = 7.3
Identities = 4/21 (19%), Positives = 10/21 (47%)
Query: 38 KELGIPTANMCDEAVKSLPES 58
K+ + + +CD +S+
Sbjct: 263 KKYHLGVSPLCDRHTESIANI 283
>1so2_A CGMP-inhibited 3',5'-cyclic phosphodiesterase B; PDE3B
phosphodiesterase, hydrolase; HET: HG9 666; 2.40A {Homo
sapiens} SCOP: a.211.1.2 PDB: 1soj_A*
Length = 420
Score = 25.3 bits (55), Expect = 7.9
Identities = 5/21 (23%), Positives = 9/21 (42%)
Query: 38 KELGIPTANMCDEAVKSLPES 58
LG+P + D + L +
Sbjct: 314 ANLGLPISPFMDRSSPQLAKL 334
>3g4g_A DPDE3, PDE43, CAMP-specific 3',5'-cyclic phosphodiesterase 4D;
PDE4D, UCR2, alternative splicing, cytoplasm,
cytoskeleton, hydrolase, membrane; HET: D71; 2.30A {Homo
sapiens} PDB: 3g45_A*
Length = 421
Score = 24.9 bits (54), Expect = 9.7
Identities = 7/21 (33%), Positives = 13/21 (61%)
Query: 38 KELGIPTANMCDEAVKSLPES 58
+E G+ + MCD+ S+ +S
Sbjct: 350 RERGMEISPMCDKHNASVEKS 370
>3ibj_A CGMP-dependent 3',5'-cyclic phosphodiesterase; PDE2A, GAF-domains,
allosteric regulation hydrolase, membrane; 3.02A {Homo
sapiens}
Length = 691
Score = 25.0 bits (54), Expect = 9.9
Identities = 6/21 (28%), Positives = 8/21 (38%)
Query: 38 KELGIPTANMCDEAVKSLPES 58
K +G M D +PE
Sbjct: 625 KAMGNRPMEMMDREKAYIPEL 645
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.139 0.432
Gapped
Lambda K H
0.267 0.0545 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,073,274
Number of extensions: 112197
Number of successful extensions: 269
Number of sequences better than 10.0: 1
Number of HSP's gapped: 255
Number of HSP's successfully gapped: 24
Length of query: 132
Length of database: 6,701,793
Length adjustment: 83
Effective length of query: 49
Effective length of database: 4,384,350
Effective search space: 214833150
Effective search space used: 214833150
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.2 bits)