RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy7973
         (132 letters)



>d1n08a_ b.43.5.1 (A:) Riboflavin kinase {Fission yeast
           (Schizosaccharomyces pombe) [TaxId: 4896]}
          Length = 154

 Score =  112 bits (280), Expect = 3e-33
 Identities = 57/110 (51%), Positives = 77/110 (70%), Gaps = 2/110 (1%)

Query: 21  YPYFTKGIIVKGFGRGSKELGIPTANMCDEAVKSLPESFDPGVYYGWSKLSDGPTVYKMV 80
           YP   +G +V GFGRGSKELGIPTAN+ ++A++ L    D GVY+G++       V+ MV
Sbjct: 14  YPIRFEGKVVHGFGRGSKELGIPTANISEDAIQELLRYRDSGVYFGYAM--VQKRVFPMV 71

Query: 81  MSIGWNPFYKNKKKSMEVHIIHEFGRDLYDLTLSICVLGYIRPELDFNSL 130
           MS+GWNP+YKNK +S EVH+I   G D Y+  + + VLGYIRPEL++  L
Sbjct: 72  MSVGWNPYYKNKLRSAEVHLIERQGEDFYEEIMRVIVLGYIRPELNYAGL 121


>d1nb9a_ b.43.5.1 (A:) Riboflavin kinase {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 147

 Score =  105 bits (262), Expect = 1e-30
 Identities = 60/110 (54%), Positives = 81/110 (73%), Gaps = 1/110 (0%)

Query: 21  YPYFTKGIIVKGFGRGSKELGIPTANMCDEAVKSLPESFDPGVYYGWSKLSDGPTVYKMV 80
            PYF +G +V+GFGRGSK+LGIPTAN  ++ V +LP     G+YYGW+ +  G   +KMV
Sbjct: 3   LPYFCRGQVVRGFGRGSKQLGIPTANFPEQVVDNLPADISTGIYYGWASVGSGDV-HKMV 61

Query: 81  MSIGWNPFYKNKKKSMEVHIIHEFGRDLYDLTLSICVLGYIRPELDFNSL 130
           +SIGWNP+YKN KKSME HI+H F  D Y   L++ ++GY+RPE +F+SL
Sbjct: 62  VSIGWNPYYKNTKKSMETHIMHTFKEDFYGEILNVAIVGYLRPEKNFDSL 111


>d1mrza1 b.43.5.1 (A:159-288) Riboflavin kinase domain of
           bifunctional FAD synthetase {Thermotoga maritima [TaxId:
           2336]}
          Length = 130

 Score = 75.1 bits (184), Expect = 4e-19
 Identities = 32/108 (29%), Positives = 50/108 (46%), Gaps = 4/108 (3%)

Query: 23  YFTKGIIVKGFGRGSKELGIPTANMCDEAVKSLPESFDPGVYYGWSKLSDGPTVYKMVMS 82
           +  +GI+ K    G ++LG PTAN+     K +      GVY     L D       VM+
Sbjct: 2   FEIEGIVHKDREFG-RKLGFPTANIDRGNEKLVD--LKRGVYLVRVHLPD-GKKKFGVMN 57

Query: 83  IGWNPFYKNKKKSMEVHIIHEFGRDLYDLTLSICVLGYIRPELDFNSL 130
           +G+ P   + +       I +F  DLY   L + VL ++R E  F+S+
Sbjct: 58  VGFRPTVGDARNVKYEVYILDFEGDLYGQRLKLEVLKFMRDEKKFDSI 105


>d1so2a_ a.211.1.2 (A:) cGMP-inhibited 3',5'-cyclic
           phosphodiesterase B, pde3b {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 415

 Score = 26.3 bits (57), Expect = 1.2
 Identities = 6/25 (24%), Positives = 10/25 (40%)

Query: 34  GRGSKELGIPTANMCDEAVKSLPES 58
           G     LG+P +   D +   L + 
Sbjct: 305 GDEEANLGLPISPFMDRSSPQLAKL 329


>d2id1a1 d.218.1.12 (A:1-120) Hypothetical protein CV0518
           {Chromobacterium violaceum [TaxId: 536]}
          Length = 120

 Score = 24.1 bits (52), Expect = 5.2
 Identities = 9/46 (19%), Positives = 16/46 (34%), Gaps = 10/46 (21%)

Query: 76  VYKMVMSIGWNPFYKNKKKS----------MEVHIIHEFGRDLYDL 111
           V   +   G +       +S          + VH++    RD YD+
Sbjct: 55  VQVKLKEAGVDIVGSEGHESGEWVLVDAGDVVVHVMLPAVRDYYDI 100


>d1taza_ a.211.1.2 (A:) Catalytic domain of cyclic nucleotide
           phosphodiesterase 1b, PDE1B {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 357

 Score = 24.3 bits (52), Expect = 5.5
 Identities = 8/26 (30%), Positives = 13/26 (50%)

Query: 33  FGRGSKELGIPTANMCDEAVKSLPES 58
            G    ELG+P + +CD     + +S
Sbjct: 250 QGDKEAELGLPFSPLCDRTSTLVAQS 275


>d2o5aa1 d.218.1.12 (A:2-114) Uncharacterized protein BH1328
           {Bacillus halodurans [TaxId: 86665]}
          Length = 113

 Score = 23.3 bits (50), Expect = 9.0
 Identities = 6/14 (42%), Positives = 9/14 (64%)

Query: 98  VHIIHEFGRDLYDL 111
           VH+ H+  R  Y+L
Sbjct: 86  VHVFHKDERAYYNL 99


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.139    0.432 

Gapped
Lambda     K      H
   0.267   0.0610    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 525,586
Number of extensions: 23328
Number of successful extensions: 43
Number of sequences better than 10.0: 1
Number of HSP's gapped: 39
Number of HSP's successfully gapped: 9
Length of query: 132
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 56
Effective length of database: 1,364,116
Effective search space: 76390496
Effective search space used: 76390496
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (22.5 bits)