BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7974
(135 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1POC|A Chain A, Crystal Structure Of Bee-venom Phospholipase A2 In A
Complex With A Transition-state Analogue
Length = 134
Score = 54.3 bits (129), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 32/50 (64%)
Query: 66 LIFPGTKWCGAGDIATDYNDLGTNVETDKCCRDHDHCSEYILAKSSLHGL 115
+I+PGT WCG G+ ++ N+LG TD CCR HD C + + A S HGL
Sbjct: 1 IIYPGTLWCGHGNKSSGPNELGRFKHTDACCRTHDMCPDVMSAGESKHGL 50
>pdb|4BP2|A Chain A, Crystallographic Refinement Of Bovine Pro-Phospholipase A2
At 1.6 Angstroms Resolution
Length = 130
Score = 26.6 bits (57), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 12/63 (19%)
Query: 73 WCGAGDIATDYNDLGTNVETDKCCRDHDHCSEYILAKSSLHGLDTFSGLALFPAWLGFEH 132
+CG G T +DL D+CC+ HD+C Y AK LD+ L P + +
Sbjct: 35 YCGLGGSGTPVDDL------DRCCQTHDNC--YKQAKK----LDSCKVLVDNPYTNNYSY 82
Query: 133 STS 135
S S
Sbjct: 83 SCS 85
>pdb|2BP2|A Chain A, The Structure Of Bovine Pancreatic Prophospholipase A2 At
3.0 Angstroms Resolution
Length = 130
Score = 26.6 bits (57), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 12/63 (19%)
Query: 73 WCGAGDIATDYNDLGTNVETDKCCRDHDHCSEYILAKSSLHGLDTFSGLALFPAWLGFEH 132
+CG G T +DL D+CC+ HD+C Y AK LD+ L P + +
Sbjct: 35 YCGLGGSGTPVDDL------DRCCQTHDNC--YKQAKK----LDSCKVLVDNPYTNNYSY 82
Query: 133 STS 135
S S
Sbjct: 83 SCS 85
>pdb|1CEH|A Chain A, Structure And Function Of The Catalytic Site Mutant
Asp99asn Of Phospholipase A2: Absence Of Conserved
Structural Water
Length = 123
Score = 26.6 bits (57), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 12/63 (19%)
Query: 73 WCGAGDIATDYNDLGTNVETDKCCRDHDHCSEYILAKSSLHGLDTFSGLALFPAWLGFEH 132
+CG G T +DL D+CC+ HD+C Y AK LD+ L P + +
Sbjct: 28 YCGLGGSGTPVDDL------DRCCQTHDNC--YKQAKK----LDSCKVLVDNPYTNNYSY 75
Query: 133 STS 135
S S
Sbjct: 76 SCS 78
>pdb|1KVX|A Chain A, Carboxylic Ester Hydrolase, Single Mutant D99a Of Bovine
Pancreatic Pla2, 1.9 A Orthorhombic Form
Length = 123
Score = 26.6 bits (57), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 12/63 (19%)
Query: 73 WCGAGDIATDYNDLGTNVETDKCCRDHDHCSEYILAKSSLHGLDTFSGLALFPAWLGFEH 132
+CG G T +DL D+CC+ HD+C Y AK LD+ L P + +
Sbjct: 28 YCGLGGSGTPVDDL------DRCCQTHDNC--YKQAKK----LDSCKVLVDNPYTNNYSY 75
Query: 133 STS 135
S S
Sbjct: 76 SCS 78
>pdb|3BP2|A Chain A, Role Of The N-Terminus In The Interaction Of Pancreatic
Phospholipase A2 With Aggregated Substrates. Properties
And Crystal Structure Of Transaminated Phospholipase A2
Length = 123
Score = 26.2 bits (56), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 12/63 (19%)
Query: 73 WCGAGDIATDYNDLGTNVETDKCCRDHDHCSEYILAKSSLHGLDTFSGLALFPAWLGFEH 132
+CG G T +DL D+CC+ HD+C Y AK LD+ L P + +
Sbjct: 28 YCGLGGSGTPVDDL------DRCCQTHDNC--YKQAKK----LDSCKVLVDNPYTNNYSY 75
Query: 133 STS 135
S S
Sbjct: 76 SCS 78
>pdb|1PO8|A Chain A, Crystal Structure Of A Complex Formed Between Krait Venom
Phospholipase A2 And Heptanoic Acid At 2.7 A Resolution.
pdb|1TC8|A Chain A, Crystal Structure Of Krait-Venom Phospholipase A2 In A
Complex With A Natural Fatty Acid Tridecanoic Acid
Length = 118
Score = 26.2 bits (56), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 6/30 (20%)
Query: 73 WCGAGDIATDYNDLGTNVETDKCCRDHDHC 102
+CG G T +DL D+CC HDHC
Sbjct: 26 YCGKGGSGTPVDDL------DRCCYTHDHC 49
>pdb|3V9M|A Chain A, Phospholipase Acii4 From Australian King Brown Snake
pdb|3V9M|B Chain B, Phospholipase Acii4 From Australian King Brown Snake
Length = 118
Score = 26.2 bits (56), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 6/47 (12%)
Query: 73 WCGAGDIATDYNDLGTNVETDKCCRDHDHCSEYILAKSSLHGLDTFS 119
+CG G T ++L D+CC+ HD+C E K L +S
Sbjct: 28 YCGWGGSGTPVDEL------DRCCQVHDNCYEQAGKKGCFPKLTLYS 68
>pdb|1BVM|A Chain A, Solution Nmr Structure Of Bovine Pancreatic Phospholipase
A2, 20 Structures
pdb|1G4I|A Chain A, Crystal Structure Of The Bovine Pancreatic Phospholipase
A2 At 0.97a
pdb|1BP2|A Chain A, Structure Of Bovine Pancreatic Phospholipase A2 At 1.7
Angstroms Resolution
pdb|1FDK|A Chain A, Carboxylic Ester Hydrolase (Pla2-Mj33 Inhibitor Complex)
pdb|1MKT|A Chain A, Carboxylic Ester Hydrolase, 1.72 Angstrom Trigonal Form Of
The Bovine Recombinant Pla2 Enzyme
pdb|1MKV|A Chain A, Carboxylic Ester Hydrolase Complex (Pla2 + Transition
State Analog Complex)
pdb|1UNE|A Chain A, Carboxylic Ester Hydrolase, 1.5 Angstrom Orthorhombic Form
Of The Bovine Recombinant Pla2
pdb|2BPP|A Chain A, Phospholipase A2 Engineering. X-Ray Structural And
Functional Evidence For The Interaction Of Lysine-56
With Substrates
Length = 123
Score = 26.2 bits (56), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 12/63 (19%)
Query: 73 WCGAGDIATDYNDLGTNVETDKCCRDHDHCSEYILAKSSLHGLDTFSGLALFPAWLGFEH 132
+CG G T +DL D+CC+ HD+C Y AK LD+ L P + +
Sbjct: 28 YCGLGGSGTPVDDL------DRCCQTHDNC--YKQAKK----LDSCKVLVDNPYTNNYSY 75
Query: 133 STS 135
S S
Sbjct: 76 SCS 78
>pdb|1IRB|A Chain A, Carboxylic Ester Hydrolase
Length = 123
Score = 26.2 bits (56), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 12/63 (19%)
Query: 73 WCGAGDIATDYNDLGTNVETDKCCRDHDHCSEYILAKSSLHGLDTFSGLALFPAWLGFEH 132
+CG G T +DL D+CC+ HD+C Y AK LD+ L P + +
Sbjct: 28 YCGLGGSGTPVDDL------DRCCQTHDNC--YKQAKK----LDSCKVLVDNPYTNNYSY 75
Query: 133 STS 135
S S
Sbjct: 76 SCS 78
>pdb|1DPY|A Chain A, Three-Dimensional Structure Of A Novel Phospholipase A2
From Indian Common Krait At 2.45 A Resolution
Length = 118
Score = 25.8 bits (55), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 6/30 (20%)
Query: 73 WCGAGDIATDYNDLGTNVETDKCCRDHDHC 102
+CG G T ++L D+CC HDHC
Sbjct: 26 YCGKGGSGTPVDEL------DRCCYTHDHC 49
>pdb|1MKS|A Chain A, Carboxylic Ester Hydrolase, Trigonal Form Of The Triple
Mutant
pdb|1MKU|A Chain A, Carboxylic Ester Hydrolase, Orthorhombic Form Of The
Triple Mutant
Length = 123
Score = 25.8 bits (55), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 12/63 (19%)
Query: 73 WCGAGDIATDYNDLGTNVETDKCCRDHDHCSEYILAKSSLHGLDTFSGLALFPAWLGFEH 132
+CG G T +DL D+CC+ HD+C + AK LD+ L P F +
Sbjct: 28 YCGLGGSGTPVDDL------DRCCQTHDNC--FKQAKK----LDSCKVLVDNPYTNNFSY 75
Query: 133 STS 135
S S
Sbjct: 76 SCS 78
>pdb|3VC0|A Chain A, Crystal Structure Of Taipoxin Beta Subunit Isoform 1
Length = 118
Score = 25.8 bits (55), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 10/43 (23%)
Query: 73 WCGAGDIATDYNDLGTNVETDKCCRDHDHCSEYILAKSSLHGL 115
+CG G T +DL D+CC+ HD C A++ HG
Sbjct: 28 YCGKGGSGTPVDDL------DRCCQVHDEC----YAEAEKHGC 60
>pdb|1BPQ|A Chain A, Phospholipase A2 Engineering. X-Ray Structural And
Functional Evidence For The Interaction Of Lysine-56
With Substrates
Length = 123
Score = 25.4 bits (54), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 12/63 (19%)
Query: 73 WCGAGDIATDYNDLGTNVETDKCCRDHDHCSEYILAKSSLHGLDTFSGLALFPAWLGFEH 132
+CG G T +DL D+CC+ HD+C + + LD+ L P + +
Sbjct: 28 YCGLGGSGTPVDDL------DRCCQTHDNCYKQAMK------LDSCKVLVDNPYTNNYSY 75
Query: 133 STS 135
S S
Sbjct: 76 SCS 78
>pdb|1GH4|A Chain A, Structure Of The Triple Mutant (K56m, K120m, K121m) Of
Phospholipase A2
Length = 123
Score = 25.4 bits (54), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 12/63 (19%)
Query: 73 WCGAGDIATDYNDLGTNVETDKCCRDHDHCSEYILAKSSLHGLDTFSGLALFPAWLGFEH 132
+CG G T +DL D+CC+ HD+C + + LD+ L P + +
Sbjct: 28 YCGLGGSGTPVDDL------DRCCQTHDNCYKQAMK------LDSCKVLVDNPYTNNYSY 75
Query: 133 STS 135
S S
Sbjct: 76 SCS 78
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.432
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,230,209
Number of Sequences: 62578
Number of extensions: 101990
Number of successful extensions: 290
Number of sequences better than 100.0: 58
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 48
Number of HSP's that attempted gapping in prelim test: 280
Number of HSP's gapped (non-prelim): 59
length of query: 135
length of database: 14,973,337
effective HSP length: 88
effective length of query: 47
effective length of database: 9,466,473
effective search space: 444924231
effective search space used: 444924231
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 46 (22.3 bits)