RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy7974
(135 letters)
>gnl|CDD|153093 cd04704, PLA2_bee_venom_like, PLA2_bee_venom_like: A sub-family of
Phospholipase A2, similar to bee venom PLA2. PLA2 is a
super-family of secretory and cytosolic enzymes; the
latter are either Ca dependent or Ca independent.
Enzymatically active PLA2 cleaves the sn-2 position of
the glycerol backbone of phospholipids; secreted PLA2s
have also been found to specifically bind to a variety
of soluble and membrane proteins in mammals, including
receptors. As a toxin, PLA2 is a potent presynaptic
neurotoxin which blocks nerve terminals by binding to
the nerve membrane and hydrolyzing stable membrane
lipids. The products of the hydrolysis cannot form
bilayers leading to a change in membrane conformation
and ultimately to a block in the release of
neurotransmitters. PLA2 may form dimers or oligomers.
Bee venom PLA2 has fewer conserved disulfide bridges
than most canonical PLA2s.
Length = 97
Score = 90.8 bits (226), Expect = 6e-25
Identities = 31/50 (62%), Positives = 37/50 (74%)
Query: 66 LIFPGTKWCGAGDIATDYNDLGTNVETDKCCRDHDHCSEYILAKSSLHGL 115
I PGTKWCG G+IAT+Y+DLG ETDKCCR+HDHC + I A +GL
Sbjct: 1 FIVPGTKWCGPGNIATNYSDLGAFRETDKCCREHDHCPDIISAGEYKYGL 50
>gnl|CDD|147789 pfam05826, Phospholip_A2_2, Phospholipase A2. This family consists
of several phospholipase A2 like proteins mostly from
insects.
Length = 99
Score = 85.0 bits (211), Expect = 1e-22
Identities = 28/53 (52%), Positives = 36/53 (67%)
Query: 67 IFPGTKWCGAGDIATDYNDLGTNVETDKCCRDHDHCSEYILAKSSLHGLDTFS 119
I PGTKWCG G+IA DY DLG +TD+CCR HD+C + I + + +GL F
Sbjct: 1 ITPGTKWCGTGNIAEDYGDLGEFDKTDRCCRTHDNCPDKIESGETKYGLTNFG 53
>gnl|CDD|153092 cd00618, PLA2_like, PLA2_like: Phospholipase A2, a super-family of
secretory and cytosolic enzymes; the latter are either
Ca dependent or Ca independent. PLA2 cleaves the sn-2
position of the glycerol backbone of phospholipids (PC
or phosphatidylethanolamine), usually in a
metal-dependent reaction, to generate lysophospholipid
(LysoPL) and a free fatty acid (FA). The resulting
products are either dietary or used in synthetic
pathways for leukotrienes and prostaglandins. Often,
arachidonic acid is released as a free fatty acid and
acts as second messenger in signaling networks. Secreted
PLA2s have also been found to specifically bind to a
variety of soluble and membrane proteins in mammals,
including receptors. As a toxin, PLA2 is a potent
presynaptic neurotoxin which blocks nerve terminals by
binding to the nerve membrane and hydrolyzing stable
membrane lipids. The products of the hydrolysis (LysoPL
and FA) cannot form bilayers leading to a change in
membrane conformation and ultimately to a block in the
release of neurotransmitters. PLA2 may form dimers or
oligomers.
Length = 83
Score = 47.2 bits (112), Expect = 4e-08
Identities = 17/52 (32%), Positives = 22/52 (42%), Gaps = 2/52 (3%)
Query: 68 FPGTKWCGAGDIATDYNDLGTNVETDKCCRDHDHCSEYILAKSSLHGLDTFS 119
P +CG G A ETD+CCR HD C + I G ++S
Sbjct: 1 LPYGCYCGPGGSACPSGQPVD--ETDRCCRKHDCCYDQISDGGCCDGCLSYS 50
>gnl|CDD|214508 smart00085, PA2c, Phospholipase A2.
Length = 117
Score = 36.4 bits (85), Expect = 8e-04
Identities = 14/41 (34%), Positives = 17/41 (41%), Gaps = 6/41 (14%)
Query: 63 KSDLIFPGTKWCGAGDIATDYNDLGTNV-ETDKCCRDHDHC 102
K + G C G + GT V TD+CC HD C
Sbjct: 15 KRAWLSYGDYGCYCGWGGS-----GTPVDATDRCCFVHDCC 50
>gnl|CDD|153091 cd00125, PLA2c, PLA2c: Phospholipase A2, a family of secretory and
cytosolic enzymes; the latter are either Ca dependent or
Ca independent. PLA2 cleaves the sn-2 position of the
glycerol backbone of phospholipids (PC or
phosphatidylethanolamine), usually in a metal-dependent
reaction, to generate lysophospholipid (LysoPL) and a
free fatty acid (FA). The resulting products are either
dietary or used in synthetic pathways for leukotrienes
and prostaglandins. Often, arachidonic acid is released
as a free fatty acid and acts as second messenger in
signaling networks. Secreted PLA2s have also been found
to specifically bind to a variety of soluble and
membrane proteins in mammals, including receptors. As a
toxin, PLA2 is a potent presynaptic neurotoxin which
blocks nerve terminals by binding to the nerve membrane
and hydrolyzing stable membrane lipids. The products of
the hydrolysis (LysoPL and FA) cannot form bilayers
leading to a change in membrane conformation and
ultimately to a block in the release of
neurotransmitters. PLA2 may form dimers or oligomers.
Length = 115
Score = 28.8 bits (65), Expect = 0.47
Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 10/40 (25%)
Query: 73 WCGAGDIATDYNDLG---------TNV-ETDKCCRDHDHC 102
C G A DYN G T V +TD+CC+ HD C
Sbjct: 10 KCTTGRSALDYNGYGCYCGLGGSGTPVDDTDRCCQVHDCC 49
>gnl|CDD|227554 COG5229, LOC7, Chromosome condensation complex Condensin, subunit H
[Chromatin structure and dynamics / Cell division and
chromosome partitioning].
Length = 662
Score = 29.0 bits (64), Expect = 0.84
Identities = 14/51 (27%), Positives = 19/51 (37%), Gaps = 2/51 (3%)
Query: 24 FDQSYYKN--AYNHNKYNYLKGNNNNKYSNFNSNEDSYRSDKSDLIFPGTK 72
FD SY+KN H K K N + + +DK+D T
Sbjct: 345 FDFSYFKNWAGPEHWKVQAKKKRVNKESDLLEETRTTITTDKTDDKSMDTS 395
>gnl|CDD|153094 cd04705, PLA2_group_III_like, PLA2_group_III_like: A sub-family of
Phospholipase A2, similar to human group III PLA2. PLA2
is a super-family of secretory and cytosolic enzymes;
the latter are either Ca dependent or Ca independent.
Enzymatically active PLA2 cleaves the sn-2 position of
the glycerol backbone of phospholipids; secreted PLA2s
have also been found to specifically bind to a variety
of soluble and membrane proteins in mammals, including
receptors. As a toxin, PLA2 is a potent presynaptic
neurotoxin which blocks nerve terminals by binding to
the nerve membrane and hydrolyzing stable membrane
lipids. The products of the hydrolysis cannot form
bilayers leading to a change in membrane conformation
and ultimately to a block in the release of
neurotransmitters. PLA2 may form dimers or oligomers.
Length = 100
Score = 27.9 bits (62), Expect = 0.91
Identities = 8/20 (40%), Positives = 10/20 (50%)
Query: 87 GTNVETDKCCRDHDHCSEYI 106
G E D+CC H C +I
Sbjct: 29 GEFKEPDRCCWKHKQCPGHI 48
>gnl|CDD|182765 PRK10834, PRK10834, vancomycin high temperature exclusion protein;
Provisional.
Length = 239
Score = 28.5 bits (64), Expect = 0.93
Identities = 18/53 (33%), Positives = 23/53 (43%), Gaps = 7/53 (13%)
Query: 31 NAYNHNKYNYLKGNNNNKYSNFNSNEDSYRSDKSDLIFPGTKWCGAGDIATDY 83
NAYN K NYL + +N ++N + DLI G DI DY
Sbjct: 75 NAYNSGKVNYLLLSGDNALQSYNEPMTMRK----DLIAAGVD---PSDIVLDY 120
>gnl|CDD|222583 pfam14188, DUF4311, Domain of unknown function (DUF4311). This
family of proteins is functionally uncharacterized. This
family of proteins is found in bacteria. Proteins in
this family are approximately 260 amino acids in length.
Length = 213
Score = 28.2 bits (63), Expect = 1.0
Identities = 8/24 (33%), Positives = 15/24 (62%)
Query: 2 KSIRALPVSVLLIFVFISSVRGFD 25
K + + ++V+L+F+ RGFD
Sbjct: 186 KITKIMLIAVVLLFILSGFFRGFD 209
>gnl|CDD|240273 PTZ00110, PTZ00110, helicase; Provisional.
Length = 545
Score = 28.2 bits (63), Expect = 1.4
Identities = 11/38 (28%), Positives = 17/38 (44%), Gaps = 4/38 (10%)
Query: 26 QSYYKNAYNHNKYNYLKGNNNNKYSNFNSNEDSYRSDK 63
Q+ +++ Y + Y GN + Y F N SY S
Sbjct: 38 QANHQDNYGGFRPGY--GNYSGGYGGFGMN--SYGSST 71
>gnl|CDD|153095 cd04706, PLA2_plant, PLA2_plant: Plant-specific sub-family of
Phospholipase A2, a super-family of secretory and
cytosolic enzymes; the latter are either Ca dependent or
Ca independent. Enzymatically active PLA2 cleaves the
sn-2 position of the glycerol backbone of phospholipids;
secreted PLA2s have also been found to specifically bind
to a variety of soluble and membrane proteins in
mammals, including receptors. As a toxin, PLA2 is a
potent presynaptic neurotoxin which blocks nerve
terminals by binding to the nerve membrane and
hydrolyzing stable membrane lipids. The products of the
hydrolysis cannot form bilayers leading to a change in
membrane conformation and ultimately to a block in the
release of neurotransmitters. PLA2 may form dimers or
oligomers. This sub-family does not appear to have a
conserved active site and metal-binding loop.
Length = 117
Score = 27.4 bits (61), Expect = 1.7
Identities = 6/10 (60%), Positives = 6/10 (60%)
Query: 93 DKCCRDHDHC 102
D CC HD C
Sbjct: 45 DACCMTHDAC 54
>gnl|CDD|200972 pfam00068, Phospholip_A2_1, Phospholipase A2. Phospholipase A2
releases fatty acids from the second carbon group of
glycerol. Perhaps the best known members are secreted
snake venoms, but also found in secreted pancreatic and
membrane-associated forms. Structure is all-alpha, with
two core disulfide-linked helices and a calcium-binding
loop. This alignment represents the major family of
PLA2s. A second minor family, defined by the honeybee
venom PLA2 PDB:1POC and related sequences from Gila
monsters (Heloderma), is not recognised. This minor
family conserves the core helix pair but is
substantially different elsewhere. The PROSITE pattern
PA2_HIS, specific to the first core helix, recognises
both families.
Length = 116
Score = 26.8 bits (60), Expect = 2.3
Identities = 9/17 (52%), Positives = 10/17 (58%), Gaps = 1/17 (5%)
Query: 87 GTNV-ETDKCCRDHDHC 102
GT V D+CC HD C
Sbjct: 34 GTPVDALDRCCFVHDCC 50
>gnl|CDD|215898 pfam00396, Granulin, Granulin.
Length = 43
Score = 24.6 bits (54), Expect = 4.5
Identities = 5/9 (55%), Positives = 5/9 (55%)
Query: 94 KCCRDHDHC 102
CC D HC
Sbjct: 19 VCCSDGLHC 27
>gnl|CDD|185139 PRK15217, PRK15217, fimbrial outer membrane usher protein;
Provisional.
Length = 826
Score = 26.7 bits (59), Expect = 4.7
Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 6/36 (16%)
Query: 21 VRGFDQSYYKNAYNHNKYNYLKGNNNNK--YSNFNS 54
+ F SYY + Y Y+ K + N+K Y FNS
Sbjct: 151 INAFYTSYYASQY----YSDYKASGNSKSTYVRFNS 182
>gnl|CDD|153037 pfam12603, DUF3770, Protein of unknown function (DUF3770). This
domain family is found in viruses, and is approximately
250 amino acids in length. The family is found in
association with pfam04196.
Length = 250
Score = 26.3 bits (58), Expect = 5.1
Identities = 5/27 (18%), Positives = 11/27 (40%)
Query: 44 NNNNKYSNFNSNEDSYRSDKSDLIFPG 70
+ ++ + D+ S KS + P
Sbjct: 126 RKMEEERSYENLRDANDSHKSTVQLPP 152
>gnl|CDD|211578 TIGR00497, hsdM, type I restriction system adenine methylase
(hsdM). Function: methylation of specific adenine
residues; required for both restriction and modification
activities. The ECOR124/3 I enzyme recognizes
5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257:
960-969 (1996)) [DNA metabolism,
Restriction/modification].
Length = 501
Score = 26.1 bits (57), Expect = 7.2
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Query: 10 SVLLIFVFISSVRGFDQSYYKNAYNHNKYNYLKGN---NNNKYSNFN 53
S+LL + + + SYY NH YN + N +N Y+NFN
Sbjct: 230 SLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNIDYANFN 276
>gnl|CDD|240432 PTZ00477, PTZ00477, rhoptry-associated protein; Provisional.
Length = 524
Score = 25.9 bits (57), Expect = 7.7
Identities = 14/58 (24%), Positives = 23/58 (39%), Gaps = 4/58 (6%)
Query: 13 LIFVFISSVRGFDQSYYKNAYNHN----KYNYLKGNNNNKYSNFNSNEDSYRSDKSDL 66
L VF R ++ + + YN N Y +Y + + YRS K++L
Sbjct: 379 LKAVFRQKGRMGNEQFKRMLYNRNFKNLTYKTKDQEVLERYLSKAAVYFKYRSRKTEL 436
>gnl|CDD|215143 PLN02255, PLN02255, H(+) -translocating inorganic pyrophosphatase.
Length = 765
Score = 26.0 bits (57), Expect = 7.9
Identities = 10/26 (38%), Positives = 13/26 (50%)
Query: 13 LIFVFISSVRGFDQSYYKNAYNHNKY 38
+IFVF+ SV GF Y+ K
Sbjct: 105 VIFVFLGSVEGFSTKSQPCTYDKGKL 130
>gnl|CDD|163685 cd07948, DRE_TIM_HCS, Saccharomyces cerevisiae homocitrate synthase
and related proteins, catalytic TIM barrel domain.
Homocitrate synthase (HCS) catalyzes the condensation of
acetyl-CoA and alpha-ketoglutarate to form homocitrate,
the first step in the lysine biosynthesis pathway. This
family includes the Yarrowia lipolytica LYS1 protein as
well as the Saccharomyces cerevisiae LYS20 and LYS21
proteins. This family belongs to the DRE-TIM
metallolyase superfamily. DRE-TIM metallolyases include
2-isopropylmalate synthase (IPMS), alpha-isopropylmalate
synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase,
homocitrate synthase, citramalate synthase,
4-hydroxy-2-oxovalerate aldolase, re-citrate synthase,
transcarboxylase 5S, pyruvate carboxylase, AksA, and
FrbC. These members all share a conserved
triose-phosphate isomerase (TIM) barrel domain
consisting of a core beta(8)-alpha(8) motif with the
eight parallel beta strands forming an enclosed barrel
surrounded by eight alpha helices. The domain has a
catalytic center containing a divalent cation-binding
site formed by a cluster of invariant residues that cap
the core of the barrel. In addition, the catalytic site
includes three invariant residues - an aspartate (D), an
arginine (R), and a glutamate (E) - which is the basis
for the domain name "DRE-TIM".
Length = 262
Score = 25.4 bits (56), Expect = 9.9
Identities = 9/14 (64%), Positives = 12/14 (85%)
Query: 54 SNEDSYRSDKSDLI 67
S+EDS+RSD DL+
Sbjct: 131 SSEDSFRSDLVDLL 144
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.134 0.420
Gapped
Lambda K H
0.267 0.0649 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,578,808
Number of extensions: 536444
Number of successful extensions: 593
Number of sequences better than 10.0: 1
Number of HSP's gapped: 584
Number of HSP's successfully gapped: 46
Length of query: 135
Length of database: 10,937,602
Length adjustment: 87
Effective length of query: 48
Effective length of database: 7,078,804
Effective search space: 339782592
Effective search space used: 339782592
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.4 bits)