RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy7974
         (135 letters)



>1poc_A Phospholipase A2; hydrolase; HET: GEL; 2.00A {Apis mellifera} SCOP:
           a.133.1.1
          Length = 134

 Score = 80.1 bits (197), Expect = 2e-20
 Identities = 24/50 (48%), Positives = 32/50 (64%)

Query: 66  LIFPGTKWCGAGDIATDYNDLGTNVETDKCCRDHDHCSEYILAKSSLHGL 115
           +I+PGT WCG G+ ++  N+LG    TD CCR HD C + + A  S HGL
Sbjct: 1   IIYPGTLWCGHGNKSSGPNELGRFKHTDACCRTHDMCPDVMSAGESKHGL 50


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 34.1 bits (77), Expect = 0.010
 Identities = 13/81 (16%), Positives = 28/81 (34%), Gaps = 12/81 (14%)

Query: 27  SYYKNAYNHNKYNYLKGNNNNKYSNFNSNEDSYRSDKSDLIFPGTKWCGAGDIATDYNDL 86
            Y+   Y+H  ++     +  + + F      +R  +  +    T W  +G I      L
Sbjct: 471 QYF---YSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQL 527

Query: 87  GTNVETDKCCRDH--DHCSEY 105
                  K  + +  D+  +Y
Sbjct: 528 -------KFYKPYICDNDPKY 541



 Score = 27.5 bits (60), Expect = 1.5
 Identities = 13/48 (27%), Positives = 18/48 (37%), Gaps = 10/48 (20%)

Query: 25  DQSYYKNAY---NHNKYNYLKGNNNNKYSNF--NSNEDSYRSDKSDLI 67
              +YK  Y   N  KY  L     N   +F     E+   S  +DL+
Sbjct: 526 QLKFYKP-YICDNDPKYERLV----NAILDFLPKIEENLICSKYTDLL 568


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 26.6 bits (58), Expect = 3.6
 Identities = 13/70 (18%), Positives = 26/70 (37%), Gaps = 10/70 (14%)

Query: 8   PVSVL-LI--FV-FISS-VRGFDQSYY----KNAYNHNKYNYLKGNN-NNKYSNFNSNED 57
           P +   L+  F+ ++SS V       +           +  YL+GN+ +   +      D
Sbjct: 54  PTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQEND 113

Query: 58  SYRSDKSDLI 67
           +      +LI
Sbjct: 114 TTLVKTKELI 123


>3fmu_A VersatIle peroxidase VPL2; class II (fungal) peroxidases,
           protoporphyrin IX, electron T lignin peroxidase, lignin
           degradation; HET: HEM; 1.04A {Pleurotus eryngii} PDB:
           3fjw_A* 2boq_A* 3fm1_A* 3fm4_A* 3fm6_A* 3fkg_A* 2w23_A*
           2vka_A*
          Length = 331

 Score = 26.4 bits (58), Expect = 4.0
 Identities = 6/40 (15%), Positives = 13/40 (32%)

Query: 24  FDQSYYKNAYNHNKYNYLKGNNNNKYSNFNSNEDSYRSDK 63
           FD  ++       +      +N  +  +    E   +SD 
Sbjct: 193 FDSQFFIETQLKGRLFPGTADNKGEAQSPLQGEIRLQSDH 232


>2wg7_A PLA2, putative phospholipase A2; hydrolase, secretory PLA2; 2.00A
           {Oryza sativa} PDB: 2wg9_A* 2wg8_B 2wg8_A
          Length = 130

 Score = 25.6 bits (55), Expect = 4.9
 Identities = 10/33 (30%), Positives = 13/33 (39%), Gaps = 2/33 (6%)

Query: 72  KWCGAGDIATDYNDLGTNVETDKCCRDHDHCSE 104
           K+CG     +           D CC  HDHC +
Sbjct: 38  KYCGILY--SGCPGERPCDALDACCMVHDHCVD 68


>3i4r_B Nuclear pore complex protein NUP133; protein transport, structural
           protein, kinetochore, mRNA transport, nucleus,
           phosphoprotein, translocation; 3.53A {Homo sapiens}
          Length = 644

 Score = 26.0 bits (56), Expect = 5.1
 Identities = 18/77 (23%), Positives = 30/77 (38%), Gaps = 9/77 (11%)

Query: 28  YYKNAYNHNKYNYLKGNNNNKYSNFNSNEDSYRSDKSDLIFP---GTKWCGAGDIATDYN 84
            + + Y     +  K +N  +Y N    E  Y   +SDL+ P     ++  A  +A  Y 
Sbjct: 299 CFLDGYVSQLKSVDKSSNRERYDNL---EMEYLQKRSDLLSPLLSLGQYLWAASLAEKYC 355

Query: 85  DLGTNVETDKCCRDHDH 101
           D    V+    C   D+
Sbjct: 356 DFDILVQM---CEQTDN 369


>4adn_A FAR1; antibiotic resistance; 1.65A {Staphylococcus aureus} PDB:
           4ado_A
          Length = 222

 Score = 24.9 bits (54), Expect = 8.5
 Identities = 8/43 (18%), Positives = 16/43 (37%), Gaps = 8/43 (18%)

Query: 76  AGDIATDYNDLGTNVETDKCCRDHDHCSEYILAKSSLHGLDTF 118
             +    Y   G  +     CRD  HC++ +   + ++    F
Sbjct: 183 KTNSDGQYVKKGDYI-----CRDSIHCNKQL---TDINQFYNF 217


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.318    0.134    0.420 

Gapped
Lambda     K      H
   0.267   0.0584    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,003,248
Number of extensions: 98403
Number of successful extensions: 236
Number of sequences better than 10.0: 1
Number of HSP's gapped: 236
Number of HSP's successfully gapped: 43
Length of query: 135
Length of database: 6,701,793
Length adjustment: 84
Effective length of query: 51
Effective length of database: 4,356,429
Effective search space: 222177879
Effective search space used: 222177879
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.1 bits)