RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy7974
(135 letters)
>d1poca_ a.133.1.1 (A:) Phospholipase A2 {European honeybee (Apis
mellifera) [TaxId: 7460]}
Length = 134
Score = 85.7 bits (212), Expect = 3e-23
Identities = 24/50 (48%), Positives = 32/50 (64%)
Query: 66 LIFPGTKWCGAGDIATDYNDLGTNVETDKCCRDHDHCSEYILAKSSLHGL 115
+I+PGT WCG G+ ++ N+LG TD CCR HD C + + A S HGL
Sbjct: 1 IIYPGTLWCGHGNKSSGPNELGRFKHTDACCRTHDMCPDVMSAGESKHGL 50
>d2g58a1 a.133.1.2 (A:1-133) Snake phospholipase A2 {Snake (Daboia
russellii pulchella), different isoforms [TaxId: 97228]}
Length = 121
Score = 24.9 bits (54), Expect = 2.5
Identities = 7/14 (50%), Positives = 8/14 (57%)
Query: 91 ETDKCCRDHDHCSE 104
TD+CC HD C
Sbjct: 39 ATDRCCFVHDCCYG 52
>d1m8ta_ a.133.1.2 (A:) Snake phospholipase A2 {King cobra
(Ophiophagus hannah), an acidic isoform [TaxId: 8665]}
Length = 119
Score = 24.5 bits (53), Expect = 3.1
Identities = 7/12 (58%), Positives = 10/12 (83%)
Query: 91 ETDKCCRDHDHC 102
E D+CC+ HD+C
Sbjct: 40 ELDRCCQVHDNC 51
>d1jiaa_ a.133.1.2 (A:) Snake phospholipase A2 {Snake (Agkistrodon
halys) [TaxId: 8714]}
Length = 122
Score = 24.5 bits (53), Expect = 3.1
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 91 ETDKCCRDHDHCSE 104
TD+CC HD C E
Sbjct: 39 ATDRCCFVHDCCYE 52
>d1sz8a_ a.133.1.2 (A:) Snake phospholipase A2 {Andaman cobra (Naja
sagittifera), acidic isoform 1 [TaxId: 195058]}
Length = 119
Score = 24.5 bits (53), Expect = 3.7
Identities = 6/12 (50%), Positives = 10/12 (83%)
Query: 91 ETDKCCRDHDHC 102
+ D+CC+ HD+C
Sbjct: 39 DLDRCCQVHDNC 50
>d1gmza_ a.133.1.2 (A:) Snake phospholipase A2 {Snake (Bothrops
pirajai), piratoxin III [TaxId: 113192]}
Length = 122
Score = 24.5 bits (53), Expect = 4.1
Identities = 11/29 (37%), Positives = 13/29 (44%), Gaps = 2/29 (6%)
Query: 91 ETDKCCRDHDHCSEYILAKSSLHGLDTFS 119
TD+CC HD C Y S D +S
Sbjct: 39 ATDRCCFVHDCC--YGKLTSCKPKTDRYS 65
>d1g0za_ a.133.1.2 (A:) Snake phospholipase A2 {Indian krait
(Bungarus caeruleus), different isoforms [TaxId:
132961]}
Length = 118
Score = 24.1 bits (52), Expect = 4.2
Identities = 8/12 (66%), Positives = 9/12 (75%)
Query: 91 ETDKCCRDHDHC 102
E D+CC HDHC
Sbjct: 38 ELDRCCYTHDHC 49
>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525
{Helicobacter pylori [TaxId: 210]}
Length = 323
Score = 24.8 bits (53), Expect = 4.3
Identities = 6/30 (20%), Positives = 14/30 (46%)
Query: 1 MKSIRALPVSVLLIFVFISSVRGFDQSYYK 30
+S+ ++ + V I+ + D+ Y K
Sbjct: 294 FESLIEGFKDLIDMIVHINHHKQCDEFYIK 323
>d1ppaa_ a.133.1.2 (A:) Snake phospholipase A2 {Eastern cottonmouth
snake (Agkistrodon piscivorus piscivorus) [TaxId: 8716]}
Length = 121
Score = 24.2 bits (52), Expect = 4.6
Identities = 8/33 (24%), Positives = 10/33 (30%), Gaps = 10/33 (30%)
Query: 82 DYNDLG----------TNVETDKCCRDHDHCSE 104
Y G TD+CC H C +
Sbjct: 20 SYGSYGCNCGWGHRGQPKDATDRCCFVHKCCYK 52
>d1zlba1 a.133.1.2 (A:1-122) Snake phospholipase A2 {Jararacussu
(Bothrops jararacussu) [TaxId: 8726]}
Length = 122
Score = 24.1 bits (52), Expect = 4.7
Identities = 10/30 (33%), Positives = 13/30 (43%), Gaps = 6/30 (20%)
Query: 73 WCGAGDIATDYNDLGTNVETDKCCRDHDHC 102
+CG G + TD+CC HD C
Sbjct: 27 YCGLGGQGQPTDA------TDRCCFVHDCC 50
>d1jlta_ a.133.1.2 (A:) Snake phospholipase A2 {Sand viper (Vipera
ammodytes meridionalis), vipoxin inhibitor [TaxId:
8704]}
Length = 122
Score = 24.1 bits (52), Expect = 4.9
Identities = 6/14 (42%), Positives = 7/14 (50%)
Query: 91 ETDKCCRDHDHCSE 104
TD+CC D C
Sbjct: 39 ATDRCCFAQDCCYG 52
>d1buna_ a.133.1.2 (A:) Snake phospholipase A2 {Many-banded krait
(Bungarus multicinctus), beta2-bungarotoxin [TaxId:
8616]}
Length = 120
Score = 24.1 bits (52), Expect = 4.9
Identities = 6/12 (50%), Positives = 8/12 (66%)
Query: 91 ETDKCCRDHDHC 102
D+CC HD+C
Sbjct: 40 ALDRCCYVHDNC 51
>d1smyc_ e.29.1.1 (C:) RNA-polymerase beta {Thermus thermophilus
[TaxId: 274]}
Length = 1119
Score = 24.7 bits (53), Expect = 5.3
Identities = 12/62 (19%), Positives = 20/62 (32%), Gaps = 2/62 (3%)
Query: 19 SSVRGFDQSYYKNAYNHNKYNYLKGNNNNKYSNFNSNEDSYRS-DKSDLIFPGTKWCGAG 77
R F S + Y + G + +E + R D+ ++ G G
Sbjct: 694 LLKRDFYTSIHIERYEIEARDTKLGPERITRDIPHLSEAALRDLDEEGVVRIGA-EVKPG 752
Query: 78 DI 79
DI
Sbjct: 753 DI 754
>d1ae7a_ a.133.1.2 (A:) Snake phospholipase A2 {Mainland tiger snake
(Notechis scutatus scutatus), notexin [TaxId: 8663]}
Length = 119
Score = 23.7 bits (51), Expect = 5.5
Identities = 7/12 (58%), Positives = 9/12 (75%)
Query: 91 ETDKCCRDHDHC 102
E D+CC+ HD C
Sbjct: 40 ELDRCCKIHDDC 51
>d1n28a_ a.133.1.2 (A:) Phospholipase A2 {Human (Homo sapiens),
synovial fluid [TaxId: 9606]}
Length = 124
Score = 24.1 bits (52), Expect = 5.6
Identities = 6/14 (42%), Positives = 8/14 (57%)
Query: 91 ETDKCCRDHDHCSE 104
TD+CC D C +
Sbjct: 39 ATDRCCVTQDCCYK 52
>d1bjja_ a.133.1.2 (A:) Snake phospholipase A2 {Snake (Agkistrodon
halys) [TaxId: 8714]}
Length = 122
Score = 23.8 bits (51), Expect = 6.4
Identities = 7/12 (58%), Positives = 8/12 (66%)
Query: 91 ETDKCCRDHDHC 102
TD+CC HD C
Sbjct: 39 GTDRCCFVHDCC 50
>d1mc2a_ a.133.1.2 (A:) Snake phospholipase A2 {Hundred-pace snake
(Agkistrodon acutus) [TaxId: 36307]}
Length = 122
Score = 23.8 bits (51), Expect = 7.3
Identities = 6/15 (40%), Positives = 8/15 (53%)
Query: 90 VETDKCCRDHDHCSE 104
TD+CC H C +
Sbjct: 38 DATDRCCFVHKCCYK 52
>d2e39a1 a.93.1.1 (A:9-344) Fungal peroxidase (ligninase)
{Arthromyces ramosus [TaxId: 5451]}
Length = 336
Score = 24.2 bits (52), Expect = 7.3
Identities = 8/47 (17%), Positives = 13/47 (27%)
Query: 16 VFISSVRGFDQSYYKNAYNHNKYNYLKGNNNNKYSNFNSNEDSYRSD 62
S+ + FD +Y + + E RSD
Sbjct: 192 PLDSTPQVFDTQFYIETLLKGTTQPGPSLGFAEELSPFPGEFRMRSD 238
>d1m8ra_ a.133.1.2 (A:) Snake phospholipase A2 {Snake (Agkistrodon
halys) [TaxId: 8714]}
Length = 124
Score = 23.7 bits (51), Expect = 7.5
Identities = 10/30 (33%), Positives = 12/30 (40%), Gaps = 6/30 (20%)
Query: 73 WCGAGDIATDYNDLGTNVETDKCCRDHDHC 102
+CG G TD+CC HD C
Sbjct: 27 YCGWGGQG------RPQDATDRCCFVHDCC 50
>d1v5da_ a.102.1.2 (A:) Chitosanase {Bacillus sp., strain k17
[TaxId: 1409]}
Length = 386
Score = 23.9 bits (51), Expect = 8.0
Identities = 5/28 (17%), Positives = 14/28 (50%)
Query: 30 KNAYNHNKYNYLKGNNNNKYSNFNSNED 57
++ Y++ K YLK + ++ + +
Sbjct: 32 RSYYDNWKKKYLKNDLSSLPGGYYVKGE 59
>d1p7oa_ a.133.1.2 (A:) Snake phospholipase A2 {Small-eye snake
(Micropechis ikaheka), different isoforms [TaxId:
66188]}
Length = 124
Score = 23.4 bits (50), Expect = 9.5
Identities = 7/12 (58%), Positives = 10/12 (83%)
Query: 91 ETDKCCRDHDHC 102
E D+CC+ HD+C
Sbjct: 40 ELDRCCQTHDNC 51
>d1g4ia_ a.133.1.2 (A:) Phospholipase A2 {Cow (Bos taurus), pancreas
[TaxId: 9913]}
Length = 123
Score = 23.4 bits (50), Expect = 9.5
Identities = 6/12 (50%), Positives = 10/12 (83%)
Query: 91 ETDKCCRDHDHC 102
+ D+CC+ HD+C
Sbjct: 40 DLDRCCQTHDNC 51
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.134 0.420
Gapped
Lambda K H
0.267 0.0627 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 498,915
Number of extensions: 20245
Number of successful extensions: 86
Number of sequences better than 10.0: 1
Number of HSP's gapped: 86
Number of HSP's successfully gapped: 31
Length of query: 135
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 59
Effective length of database: 1,364,116
Effective search space: 80482844
Effective search space used: 80482844
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (22.5 bits)