BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7977
(1225 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4A11|A Chain A, Structure Of The Hsddb1-Hscsa Complex
pdb|4A0K|C Chain C, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 1159
Score = 685 bits (1767), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 344/544 (63%), Positives = 409/544 (75%), Gaps = 14/544 (2%)
Query: 81 RYLLGDLAGRLFXXXXXXXXXXDGTFSVKEPKVELLGEISIPECLTYLDNGVVFVGSRLG 140
RYLLGD+ GRLF DGT ++K+ +VELLGE SI ECLTYLDNGVVFVGSRLG
Sbjct: 289 RYLLGDMEGRLFMLLLEKEEQMDGTVTLKDLRVELLGETSIAECLTYLDNGVVFVGSRLG 348
Query: 141 DSQLVKLNRSPDENGTYVSVMESFTNLAPIIDMVVVDLERQGQGQLVTCSGGFKEGSLRI 200
DSQLVKLN +E G+YV ME+FTNL PI+DM VVDLERQGQGQLVTCSG FKEGSLRI
Sbjct: 349 DSQLVKLNVDSNEQGSYVVAMETFTNLGPIVDMCVVDLERQGQGQLVTCSGAFKEGSLRI 408
Query: 201 IRNGIGIEEHACIDLPGIKGIWALSIGSPKNLDNTLVLSFVGHTRVLTLSGAEVEETEMG 260
IRNGIGI EHA IDLPGIKG+W L + D+TLVLSFVG TRVL L+G EVEETE+
Sbjct: 409 IRNGIGIHEHASIDLPGIKGLWPLRSDPNRETDDTLVLSFVGQTRVLMLNGEEVEETELM 468
Query: 261 GFTSDQQTFYCGNVDPRTVLQVTPSAAILISTESKARVSSWEPPNGKSISVVSCNKNQVL 320
GF DQQTF+CGNV + ++Q+T ++ L+S E KA VS W+ P K+ISV SCN +QV+
Sbjct: 469 GFVDDQQTFFCGNVAHQQLIQITSASVRLVSQEPKALVSEWKEPQAKNISVASCNSSQVV 528
Query: 321 CATGCDVYYLEVHGSEIKQLAHRALEYEVACLDISPLSNEETSSEPAKAQLAAVGLWTDI 380
A G +YYL++H E++Q++H +E+EVACLDI+PL + S L A+GLWTDI
Sbjct: 529 VAVGRALYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGLSP-----LCAIGLWTDI 583
Query: 381 SARLLSLPSLEEVCKEPLGGEIIPRSILMTCFEGHCYLLVALGDGSMFYFSLDPASGRLT 440
SAR+L LPS E + KE LGGEIIPRSILMT FE YLL ALGDG++FYF L+ +G L+
Sbjct: 584 SARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLLS 643
Query: 441 DKKKVTLGTQPTVLKTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLRQVNHMCSLNA 500
D+KKVTLGTQPTVL+TFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNL++VN+MC LN+
Sbjct: 644 DRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLKEVNYMCPLNS 703
Query: 501 ESYPDSLALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQE 560
+ YPDSLALA +ST T GTIDEIQKLHIRTVPL E+PR+I YQE SQ FGV+++RI++Q+
Sbjct: 704 DGYPDSLALANNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQD 763
Query: 561 -ADGSTPVRPXXXXXXXXXXXXXXXXXXYIKPGSTKQSTANQPADFNMEVEVHNLLIIDQ 619
+ G+T +RP STA F EVEVHNLLIIDQ
Sbjct: 764 TSGGTTALRPSASTQALSSSVSSSK--------LFSSSTAPHETSFGEEVEVHNLLIIDQ 815
Query: 620 NTFE 623
+TFE
Sbjct: 816 HTFE 819
Score = 386 bits (992), Expect = e-107, Method: Compositional matrix adjust.
Identities = 181/284 (63%), Positives = 227/284 (79%)
Query: 684 TQRTDLNLVVAKNNRIEIHTVTPEGLRPVKEIFLYGKIAVMKFFRGPTDKKDLLFIITQR 743
T DLNL++AKN R+EI+ VT EGLRPVKE+ +YGKIAVM+ FR + KDLLFI+T +
Sbjct: 43 TSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGKIAVMELFRPKGESKDLLFILTAK 102
Query: 744 YNAMILECRGDIDNLEILTKAHGNVSDRIGKPSENGIIAIIDPEARVIGLRLYNGLFKII 803
YNA ILE + ++++I+T+AHGNV DRIG+PSE GII IIDPE R+IGLRLY+GLFK+I
Sbjct: 103 YNACILEYKQSGESIDIITRAHGNVQDRIGRPSETGIIGIIDPECRMIGLRLYDGLFKVI 162
Query: 804 PLEKDNFELKASSIRMEELEIQDVQFLHGCQNPTIICIHQDVNGRHVKTHEISLKEKEFT 863
PL++DN ELKA +IR+EEL + DV+FL+GCQ PTI ++QD GRHVKT+E+SL+EKEF
Sbjct: 163 PLDRDNKELKAFNIRLEELHVIDVKFLYGCQAPTICFVYQDPQGRHVKTYEVSLREKEFN 222
Query: 864 KTPWKQDNIEMEASLVIPVPEPLGGAIIIGQESILYHSGKSYVAVAPQIIKSSTIVCYAK 923
K PWKQ+N+E EAS+VI VPEP GGAIIIGQESI YH+G Y+A+AP IIK STIVC+ +
Sbjct: 223 KGPWKQENVEAEASMVIAVPEPFGGAIIIGQESITYHNGDKYLAIAPPIIKQSTIVCHNR 282
Query: 924 VDANGERYLLGDLAGRLFXXXXXXXXXXDGTFSVKEPKVELLGE 967
VD NG RYLLGD+ GRLF DGT ++K+ +VELLGE
Sbjct: 283 VDPNGSRYLLGDMEGRLFMLLLEKEEQMDGTVTLKDLRVELLGE 326
Score = 369 bits (946), Expect = e-102, Method: Compositional matrix adjust.
Identities = 167/226 (73%), Positives = 197/226 (87%)
Query: 991 TANQPADFNMEVEVHNLLIIDQNTFEILHAHQLFPGEYALSLISSKFGEDPNTYFVLGTA 1050
TA F EVEVHNLLIIDQ+TFE+LHAHQ EYALSL+S K G+DPNTYF++GTA
Sbjct: 794 TAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTA 853
Query: 1051 VVHPEENEPKQGRIIIFHYDDGKLQQIAEKEIKGACYSMCEFNGKLLASINSTVRLFEWT 1110
+V+PEE EPKQGRI++F Y DGKLQ +AEKE+KGA YSM EFNGKLLASINSTVRL+EWT
Sbjct: 854 MVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWT 913
Query: 1111 NEKELRLECSHFNNIIALFLKVKGDFILVGDLMRSLTLLQYKTMEGSFEEISRDYNPNWM 1170
EKELR EC+H+NNI+AL+LK KGDFILVGDLMRS+ LL YK MEG+FEEI+RD+NPNWM
Sbjct: 914 TEKELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWM 973
Query: 1171 TSIEILDDELFLGAENSYNLFICQKDSAATSDEDRTHLQEVGTVHL 1216
+++EILDD+ FLGAEN++NLF+CQKDSAAT+DE+R HLQEVG HL
Sbjct: 974 SAVEILDDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFHL 1019
Score = 87.8 bits (216), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 45/68 (66%), Positives = 49/68 (72%)
Query: 1 EGSLRIIRNGIGIEEHACIDLPGIKGIWALSIGSPKNLDNTLVLSFVGHTRVLTLSGAEW 60
EGSLRIIRNGIGI EHA IDLPGIKG+W L + D+TLVLSFVG TRVL L+G E
Sbjct: 403 EGSLRIIRNGIGIHEHASIDLPGIKGLWPLRSDPNRETDDTLVLSFVGQTRVLMLNGEEV 462
Query: 61 GFHLLRGF 68
L GF
Sbjct: 463 EETELMGF 470
Score = 87.0 bits (214), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 42/81 (51%), Positives = 59/81 (72%)
Query: 625 NFTSSTDLNLVVAKNNRIEIHTVTPEGLRPVKEIFLYGKIAVMKFFRGPTDKKDLLFIIT 684
+FTS+ DLNL++AKN R+EI+ VT EGLRPVKE+ +YGKIAVM+ FR + KDLLFI+T
Sbjct: 41 HFTSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGKIAVMELFRPKGESKDLLFILT 100
Query: 685 QRTDLNLVVAKNNRIEIHTVT 705
+ + ++ K + I +T
Sbjct: 101 AKYNACILEYKQSGESIDIIT 121
>pdb|4A0B|A Chain A, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0B|C Chain C, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
Length = 1159
Score = 685 bits (1767), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 344/544 (63%), Positives = 409/544 (75%), Gaps = 14/544 (2%)
Query: 81 RYLLGDLAGRLFXXXXXXXXXXDGTFSVKEPKVELLGEISIPECLTYLDNGVVFVGSRLG 140
RYLLGD+ GRLF DGT ++K+ +VELLGE SI ECLTYLDNGVVFVGSRLG
Sbjct: 289 RYLLGDMEGRLFMLLLEKEEQMDGTVTLKDLRVELLGETSIAECLTYLDNGVVFVGSRLG 348
Query: 141 DSQLVKLNRSPDENGTYVSVMESFTNLAPIIDMVVVDLERQGQGQLVTCSGGFKEGSLRI 200
DSQLVKLN +E G+YV ME+FTNL PI+DM VVDLERQGQGQLVTCSG FKEGSLRI
Sbjct: 349 DSQLVKLNVDSNEQGSYVVAMETFTNLGPIVDMCVVDLERQGQGQLVTCSGAFKEGSLRI 408
Query: 201 IRNGIGIEEHACIDLPGIKGIWALSIGSPKNLDNTLVLSFVGHTRVLTLSGAEVEETEMG 260
IRNGIGI EHA IDLPGIKG+W L + D+TLVLSFVG TRVL L+G EVEETE+
Sbjct: 409 IRNGIGIHEHASIDLPGIKGLWPLRSDPNRETDDTLVLSFVGQTRVLMLNGEEVEETELM 468
Query: 261 GFTSDQQTFYCGNVDPRTVLQVTPSAAILISTESKARVSSWEPPNGKSISVVSCNKNQVL 320
GF DQQTF+CGNV + ++Q+T ++ L+S E KA VS W+ P K+ISV SCN +QV+
Sbjct: 469 GFVDDQQTFFCGNVAHQQLIQITSASVRLVSQEPKALVSEWKEPQAKNISVASCNSSQVV 528
Query: 321 CATGCDVYYLEVHGSEIKQLAHRALEYEVACLDISPLSNEETSSEPAKAQLAAVGLWTDI 380
A G +YYL++H E++Q++H +E+EVACLDI+PL + S L A+GLWTDI
Sbjct: 529 VAVGRALYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGLSP-----LCAIGLWTDI 583
Query: 381 SARLLSLPSLEEVCKEPLGGEIIPRSILMTCFEGHCYLLVALGDGSMFYFSLDPASGRLT 440
SAR+L LPS E + KE LGGEIIPRSILMT FE YLL ALGDG++FYF L+ +G L+
Sbjct: 584 SARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLLS 643
Query: 441 DKKKVTLGTQPTVLKTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLRQVNHMCSLNA 500
D+KKVTLGTQPTVL+TFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNL++VN+MC LN+
Sbjct: 644 DRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLKEVNYMCPLNS 703
Query: 501 ESYPDSLALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQE 560
+ YPDSLALA +ST T GTIDEIQKLHIRTVPL E+PR+I YQE SQ FGV+++RI++Q+
Sbjct: 704 DGYPDSLALANNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQD 763
Query: 561 -ADGSTPVRPXXXXXXXXXXXXXXXXXXYIKPGSTKQSTANQPADFNMEVEVHNLLIIDQ 619
+ G+T +RP STA F EVEVHNLLIIDQ
Sbjct: 764 TSGGTTALRPSASTQALSSSVSSSK--------LFSSSTAPHETSFGEEVEVHNLLIIDQ 815
Query: 620 NTFE 623
+TFE
Sbjct: 816 HTFE 819
Score = 384 bits (987), Expect = e-106, Method: Compositional matrix adjust.
Identities = 180/284 (63%), Positives = 226/284 (79%)
Query: 684 TQRTDLNLVVAKNNRIEIHTVTPEGLRPVKEIFLYGKIAVMKFFRGPTDKKDLLFIITQR 743
T DLNL++AKN R+EI+ VT EGLRPVKE+ +YGKIAVM+ FR + KDLLFI+T +
Sbjct: 43 TSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGKIAVMELFRPKGESKDLLFILTAK 102
Query: 744 YNAMILECRGDIDNLEILTKAHGNVSDRIGKPSENGIIAIIDPEARVIGLRLYNGLFKII 803
YNA ILE + ++++I+T+AHGNV DRIG+PSE GII IIDPE R+IGLRLY+GLFK+I
Sbjct: 103 YNACILEYKQSGESIDIITRAHGNVQDRIGRPSETGIIGIIDPECRMIGLRLYDGLFKVI 162
Query: 804 PLEKDNFELKASSIRMEELEIQDVQFLHGCQNPTIICIHQDVNGRHVKTHEISLKEKEFT 863
PL++DN ELKA +IR+EEL + DV+FL+GCQ PTI ++QD GRHVKT+E+SL+EKEF
Sbjct: 163 PLDRDNKELKAFNIRLEELHVIDVKFLYGCQAPTICFVYQDPQGRHVKTYEVSLREKEFN 222
Query: 864 KTPWKQDNIEMEASLVIPVPEPLGGAIIIGQESILYHSGKSYVAVAPQIIKSSTIVCYAK 923
K PWKQ+N+E EAS+VI VP P GGAIIIGQESI YH+G Y+A+AP IIK STIVC+ +
Sbjct: 223 KGPWKQENVEAEASMVIAVPSPFGGAIIIGQESITYHNGDKYLAIAPPIIKQSTIVCHNR 282
Query: 924 VDANGERYLLGDLAGRLFXXXXXXXXXXDGTFSVKEPKVELLGE 967
VD NG RYLLGD+ GRLF DGT ++K+ +VELLGE
Sbjct: 283 VDPNGSRYLLGDMEGRLFMLLLEKEEQMDGTVTLKDLRVELLGE 326
Score = 369 bits (946), Expect = e-102, Method: Compositional matrix adjust.
Identities = 167/226 (73%), Positives = 197/226 (87%)
Query: 991 TANQPADFNMEVEVHNLLIIDQNTFEILHAHQLFPGEYALSLISSKFGEDPNTYFVLGTA 1050
TA F EVEVHNLLIIDQ+TFE+LHAHQ EYALSL+S K G+DPNTYF++GTA
Sbjct: 794 TAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTA 853
Query: 1051 VVHPEENEPKQGRIIIFHYDDGKLQQIAEKEIKGACYSMCEFNGKLLASINSTVRLFEWT 1110
+V+PEE EPKQGRI++F Y DGKLQ +AEKE+KGA YSM EFNGKLLASINSTVRL+EWT
Sbjct: 854 MVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWT 913
Query: 1111 NEKELRLECSHFNNIIALFLKVKGDFILVGDLMRSLTLLQYKTMEGSFEEISRDYNPNWM 1170
EKELR EC+H+NNI+AL+LK KGDFILVGDLMRS+ LL YK MEG+FEEI+RD+NPNWM
Sbjct: 914 TEKELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWM 973
Query: 1171 TSIEILDDELFLGAENSYNLFICQKDSAATSDEDRTHLQEVGTVHL 1216
+++EILDD+ FLGAEN++NLF+CQKDSAAT+DE+R HLQEVG HL
Sbjct: 974 SAVEILDDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFHL 1019
Score = 87.8 bits (216), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 45/68 (66%), Positives = 49/68 (72%)
Query: 1 EGSLRIIRNGIGIEEHACIDLPGIKGIWALSIGSPKNLDNTLVLSFVGHTRVLTLSGAEW 60
EGSLRIIRNGIGI EHA IDLPGIKG+W L + D+TLVLSFVG TRVL L+G E
Sbjct: 403 EGSLRIIRNGIGIHEHASIDLPGIKGLWPLRSDPNRETDDTLVLSFVGQTRVLMLNGEEV 462
Query: 61 GFHLLRGF 68
L GF
Sbjct: 463 EETELMGF 470
Score = 87.0 bits (214), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 42/81 (51%), Positives = 59/81 (72%)
Query: 625 NFTSSTDLNLVVAKNNRIEIHTVTPEGLRPVKEIFLYGKIAVMKFFRGPTDKKDLLFIIT 684
+FTS+ DLNL++AKN R+EI+ VT EGLRPVKE+ +YGKIAVM+ FR + KDLLFI+T
Sbjct: 41 HFTSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGKIAVMELFRPKGESKDLLFILT 100
Query: 685 QRTDLNLVVAKNNRIEIHTVT 705
+ + ++ K + I +T
Sbjct: 101 AKYNACILEYKQSGESIDIIT 121
>pdb|4A08|A Chain A, Structure Of Hsddb1-Drddb2 Bound To A 13 Bp Cpd-Duplex (
Purine At D-1 Position) At 3.0 A Resolution (Cpd 1)
pdb|4A09|A Chain A, Structure Of Hsddb1-Drddb2 Bound To A 15 Bp Cpd-Duplex
(Purine At D-1 Position) At 3.1 A Resolution (Cpd 2)
Length = 1159
Score = 685 bits (1767), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 344/544 (63%), Positives = 409/544 (75%), Gaps = 14/544 (2%)
Query: 81 RYLLGDLAGRLFXXXXXXXXXXDGTFSVKEPKVELLGEISIPECLTYLDNGVVFVGSRLG 140
RYLLGD+ GRLF DGT ++K+ +VELLGE SI ECLTYLDNGVVFVGSRLG
Sbjct: 289 RYLLGDMEGRLFMLLLEKEEQMDGTVTLKDLRVELLGETSIAECLTYLDNGVVFVGSRLG 348
Query: 141 DSQLVKLNRSPDENGTYVSVMESFTNLAPIIDMVVVDLERQGQGQLVTCSGGFKEGSLRI 200
DSQLVKLN +E G+YV ME+FTNL PI+DM VVDLERQGQGQLVTCSG FKEGSLRI
Sbjct: 349 DSQLVKLNVDSNEQGSYVVAMETFTNLGPIVDMCVVDLERQGQGQLVTCSGAFKEGSLRI 408
Query: 201 IRNGIGIEEHACIDLPGIKGIWALSIGSPKNLDNTLVLSFVGHTRVLTLSGAEVEETEMG 260
IRNGIGI EHA IDLPGIKG+W L + D+TLVLSFVG TRVL L+G EVEETE+
Sbjct: 409 IRNGIGIHEHASIDLPGIKGLWPLRSDPNRETDDTLVLSFVGQTRVLMLNGEEVEETELM 468
Query: 261 GFTSDQQTFYCGNVDPRTVLQVTPSAAILISTESKARVSSWEPPNGKSISVVSCNKNQVL 320
GF DQQTF+CGNV + ++Q+T ++ L+S E KA VS W+ P K+ISV SCN +QV+
Sbjct: 469 GFVDDQQTFFCGNVAHQQLIQITSASVRLVSQEPKALVSEWKEPQAKNISVASCNSSQVV 528
Query: 321 CATGCDVYYLEVHGSEIKQLAHRALEYEVACLDISPLSNEETSSEPAKAQLAAVGLWTDI 380
A G +YYL++H E++Q++H +E+EVACLDI+PL + S L A+GLWTDI
Sbjct: 529 VAVGRALYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGLSP-----LCAIGLWTDI 583
Query: 381 SARLLSLPSLEEVCKEPLGGEIIPRSILMTCFEGHCYLLVALGDGSMFYFSLDPASGRLT 440
SAR+L LPS E + KE LGGEIIPRSILMT FE YLL ALGDG++FYF L+ +G L+
Sbjct: 584 SARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLLS 643
Query: 441 DKKKVTLGTQPTVLKTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLRQVNHMCSLNA 500
D+KKVTLGTQPTVL+TFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNL++VN+MC LN+
Sbjct: 644 DRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLKEVNYMCPLNS 703
Query: 501 ESYPDSLALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQE 560
+ YPDSLALA +ST T GTIDEIQKLHIRTVPL E+PR+I YQE SQ FGV+++RI++Q+
Sbjct: 704 DGYPDSLALANNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQD 763
Query: 561 -ADGSTPVRPXXXXXXXXXXXXXXXXXXYIKPGSTKQSTANQPADFNMEVEVHNLLIIDQ 619
+ G+T +RP STA F EVEVHNLLIIDQ
Sbjct: 764 TSGGTTALRPSASTQALSSSVSSSK--------LFSSSTAPHETSFGEEVEVHNLLIIDQ 815
Query: 620 NTFE 623
+TFE
Sbjct: 816 HTFE 819
Score = 384 bits (986), Expect = e-106, Method: Compositional matrix adjust.
Identities = 180/284 (63%), Positives = 226/284 (79%)
Query: 684 TQRTDLNLVVAKNNRIEIHTVTPEGLRPVKEIFLYGKIAVMKFFRGPTDKKDLLFIITQR 743
T DLNL++AKN R+EI+ VT EGLRPVKE+ +YGKIAVM+ FR + KDLLFI+T +
Sbjct: 43 TSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGKIAVMELFRPKGESKDLLFILTAK 102
Query: 744 YNAMILECRGDIDNLEILTKAHGNVSDRIGKPSENGIIAIIDPEARVIGLRLYNGLFKII 803
YNA ILE + ++++I+T+AHGNV DRIG+PSE GII IIDPE R+IGLRLY+GLFK+I
Sbjct: 103 YNACILEYKQSGESIDIITRAHGNVQDRIGRPSETGIIGIIDPECRMIGLRLYDGLFKVI 162
Query: 804 PLEKDNFELKASSIRMEELEIQDVQFLHGCQNPTIICIHQDVNGRHVKTHEISLKEKEFT 863
PL++DN ELKA +IR+EEL + DV+FL+GCQ PTI ++QD GRHVKT+ +SL+EKEF
Sbjct: 163 PLDRDNKELKAFNIRLEELHVIDVKFLYGCQAPTICFVYQDPQGRHVKTYAVSLREKEFN 222
Query: 864 KTPWKQDNIEMEASLVIPVPEPLGGAIIIGQESILYHSGKSYVAVAPQIIKSSTIVCYAK 923
K PWKQ+N+E EAS+VI VPEP GGAIIIGQESI YH+G Y+A+AP IIK STIVC+ +
Sbjct: 223 KGPWKQENVEAEASMVIAVPEPFGGAIIIGQESITYHNGDKYLAIAPPIIKQSTIVCHNR 282
Query: 924 VDANGERYLLGDLAGRLFXXXXXXXXXXDGTFSVKEPKVELLGE 967
VD NG RYLLGD+ GRLF DGT ++K+ +VELLGE
Sbjct: 283 VDPNGSRYLLGDMEGRLFMLLLEKEEQMDGTVTLKDLRVELLGE 326
Score = 369 bits (946), Expect = e-102, Method: Compositional matrix adjust.
Identities = 167/226 (73%), Positives = 197/226 (87%)
Query: 991 TANQPADFNMEVEVHNLLIIDQNTFEILHAHQLFPGEYALSLISSKFGEDPNTYFVLGTA 1050
TA F EVEVHNLLIIDQ+TFE+LHAHQ EYALSL+S K G+DPNTYF++GTA
Sbjct: 794 TAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTA 853
Query: 1051 VVHPEENEPKQGRIIIFHYDDGKLQQIAEKEIKGACYSMCEFNGKLLASINSTVRLFEWT 1110
+V+PEE EPKQGRI++F Y DGKLQ +AEKE+KGA YSM EFNGKLLASINSTVRL+EWT
Sbjct: 854 MVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWT 913
Query: 1111 NEKELRLECSHFNNIIALFLKVKGDFILVGDLMRSLTLLQYKTMEGSFEEISRDYNPNWM 1170
EKELR EC+H+NNI+AL+LK KGDFILVGDLMRS+ LL YK MEG+FEEI+RD+NPNWM
Sbjct: 914 TEKELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWM 973
Query: 1171 TSIEILDDELFLGAENSYNLFICQKDSAATSDEDRTHLQEVGTVHL 1216
+++EILDD+ FLGAEN++NLF+CQKDSAAT+DE+R HLQEVG HL
Sbjct: 974 SAVEILDDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFHL 1019
Score = 87.8 bits (216), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 45/68 (66%), Positives = 49/68 (72%)
Query: 1 EGSLRIIRNGIGIEEHACIDLPGIKGIWALSIGSPKNLDNTLVLSFVGHTRVLTLSGAEW 60
EGSLRIIRNGIGI EHA IDLPGIKG+W L + D+TLVLSFVG TRVL L+G E
Sbjct: 403 EGSLRIIRNGIGIHEHASIDLPGIKGLWPLRSDPNRETDDTLVLSFVGQTRVLMLNGEEV 462
Query: 61 GFHLLRGF 68
L GF
Sbjct: 463 EETELMGF 470
Score = 87.0 bits (214), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 42/81 (51%), Positives = 59/81 (72%)
Query: 625 NFTSSTDLNLVVAKNNRIEIHTVTPEGLRPVKEIFLYGKIAVMKFFRGPTDKKDLLFIIT 684
+FTS+ DLNL++AKN R+EI+ VT EGLRPVKE+ +YGKIAVM+ FR + KDLLFI+T
Sbjct: 41 HFTSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGKIAVMELFRPKGESKDLLFILT 100
Query: 685 QRTDLNLVVAKNNRIEIHTVT 705
+ + ++ K + I +T
Sbjct: 101 AKYNACILEYKQSGESIDIIT 121
>pdb|4A0A|A Chain A, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.6 A Resolution (Cpd 3)
Length = 1159
Score = 684 bits (1766), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 344/544 (63%), Positives = 409/544 (75%), Gaps = 14/544 (2%)
Query: 81 RYLLGDLAGRLFXXXXXXXXXXDGTFSVKEPKVELLGEISIPECLTYLDNGVVFVGSRLG 140
RYLLGD+ GRLF DGT ++K+ +VELLGE SI ECLTYLDNGVVFVGSRLG
Sbjct: 289 RYLLGDMEGRLFMLLLEKEEQMDGTVTLKDLRVELLGETSIAECLTYLDNGVVFVGSRLG 348
Query: 141 DSQLVKLNRSPDENGTYVSVMESFTNLAPIIDMVVVDLERQGQGQLVTCSGGFKEGSLRI 200
DSQLVKLN +E G+YV ME+FTNL PI+DM VVDLERQGQGQLVTCSG FKEGSLRI
Sbjct: 349 DSQLVKLNVDSNEQGSYVVAMETFTNLGPIVDMCVVDLERQGQGQLVTCSGAFKEGSLRI 408
Query: 201 IRNGIGIEEHACIDLPGIKGIWALSIGSPKNLDNTLVLSFVGHTRVLTLSGAEVEETEMG 260
IRNGIGI EHA IDLPGIKG+W L + D+TLVLSFVG TRVL L+G EVEETE+
Sbjct: 409 IRNGIGIHEHASIDLPGIKGLWPLRSDPNRETDDTLVLSFVGQTRVLMLNGEEVEETELM 468
Query: 261 GFTSDQQTFYCGNVDPRTVLQVTPSAAILISTESKARVSSWEPPNGKSISVVSCNKNQVL 320
GF DQQTF+CGNV + ++Q+T ++ L+S E KA VS W+ P K+ISV SCN +QV+
Sbjct: 469 GFVDDQQTFFCGNVAHQQLIQITSASVRLVSQEPKALVSEWKEPQAKNISVASCNSSQVV 528
Query: 321 CATGCDVYYLEVHGSEIKQLAHRALEYEVACLDISPLSNEETSSEPAKAQLAAVGLWTDI 380
A G +YYL++H E++Q++H +E+EVACLDI+PL + S L A+GLWTDI
Sbjct: 529 VAVGRALYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGLSP-----LCAIGLWTDI 583
Query: 381 SARLLSLPSLEEVCKEPLGGEIIPRSILMTCFEGHCYLLVALGDGSMFYFSLDPASGRLT 440
SAR+L LPS E + KE LGGEIIPRSILMT FE YLL ALGDG++FYF L+ +G L+
Sbjct: 584 SARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLLS 643
Query: 441 DKKKVTLGTQPTVLKTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLRQVNHMCSLNA 500
D+KKVTLGTQPTVL+TFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNL++VN+MC LN+
Sbjct: 644 DRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLKEVNYMCPLNS 703
Query: 501 ESYPDSLALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQE 560
+ YPDSLALA +ST T GTIDEIQKLHIRTVPL E+PR+I YQE SQ FGV+++RI++Q+
Sbjct: 704 DGYPDSLALANNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQD 763
Query: 561 -ADGSTPVRPXXXXXXXXXXXXXXXXXXYIKPGSTKQSTANQPADFNMEVEVHNLLIIDQ 619
+ G+T +RP STA F EVEVHNLLIIDQ
Sbjct: 764 TSGGTTALRPSASTQALSSSVSSSK--------LFSSSTAPHETSFGEEVEVHNLLIIDQ 815
Query: 620 NTFE 623
+TFE
Sbjct: 816 HTFE 819
Score = 384 bits (987), Expect = e-106, Method: Compositional matrix adjust.
Identities = 180/284 (63%), Positives = 227/284 (79%)
Query: 684 TQRTDLNLVVAKNNRIEIHTVTPEGLRPVKEIFLYGKIAVMKFFRGPTDKKDLLFIITQR 743
T DLNL++AKN R+EI+ VT EGLRPVKE+ +YGKIAVM+ FR + KDLLFI+T +
Sbjct: 43 TSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGKIAVMELFRPKGESKDLLFILTAK 102
Query: 744 YNAMILECRGDIDNLEILTKAHGNVSDRIGKPSENGIIAIIDPEARVIGLRLYNGLFKII 803
YNA ILE + ++++I+T+AHGNV DRIG+PSE GII IIDPE R+IGLRLY+GLFK+I
Sbjct: 103 YNACILEYKQSGESIDIITRAHGNVQDRIGRPSETGIIGIIDPECRMIGLRLYDGLFKVI 162
Query: 804 PLEKDNFELKASSIRMEELEIQDVQFLHGCQNPTIICIHQDVNGRHVKTHEISLKEKEFT 863
PL++DN ELKA +IR+EEL + DV+FL+GCQ PTI ++QD GRHVKT+E+SL+EKEF
Sbjct: 163 PLDRDNKELKAFNIRLEELHVIDVKFLYGCQAPTICFVYQDPQGRHVKTYEVSLREKEFN 222
Query: 864 KTPWKQDNIEMEASLVIPVPEPLGGAIIIGQESILYHSGKSYVAVAPQIIKSSTIVCYAK 923
K PWKQ+N+E EAS+VI VP+P GGAIIIGQESI YH+G Y+A+AP IIK STIVC+ +
Sbjct: 223 KGPWKQENVEAEASMVIAVPKPFGGAIIIGQESITYHNGDKYLAIAPPIIKQSTIVCHNR 282
Query: 924 VDANGERYLLGDLAGRLFXXXXXXXXXXDGTFSVKEPKVELLGE 967
VD NG RYLLGD+ GRLF DGT ++K+ +VELLGE
Sbjct: 283 VDPNGSRYLLGDMEGRLFMLLLEKEEQMDGTVTLKDLRVELLGE 326
Score = 369 bits (946), Expect = e-102, Method: Compositional matrix adjust.
Identities = 167/226 (73%), Positives = 197/226 (87%)
Query: 991 TANQPADFNMEVEVHNLLIIDQNTFEILHAHQLFPGEYALSLISSKFGEDPNTYFVLGTA 1050
TA F EVEVHNLLIIDQ+TFE+LHAHQ EYALSL+S K G+DPNTYF++GTA
Sbjct: 794 TAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTA 853
Query: 1051 VVHPEENEPKQGRIIIFHYDDGKLQQIAEKEIKGACYSMCEFNGKLLASINSTVRLFEWT 1110
+V+PEE EPKQGRI++F Y DGKLQ +AEKE+KGA YSM EFNGKLLASINSTVRL+EWT
Sbjct: 854 MVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWT 913
Query: 1111 NEKELRLECSHFNNIIALFLKVKGDFILVGDLMRSLTLLQYKTMEGSFEEISRDYNPNWM 1170
EKELR EC+H+NNI+AL+LK KGDFILVGDLMRS+ LL YK MEG+FEEI+RD+NPNWM
Sbjct: 914 TEKELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWM 973
Query: 1171 TSIEILDDELFLGAENSYNLFICQKDSAATSDEDRTHLQEVGTVHL 1216
+++EILDD+ FLGAEN++NLF+CQKDSAAT+DE+R HLQEVG HL
Sbjct: 974 SAVEILDDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFHL 1019
Score = 87.8 bits (216), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 45/68 (66%), Positives = 49/68 (72%)
Query: 1 EGSLRIIRNGIGIEEHACIDLPGIKGIWALSIGSPKNLDNTLVLSFVGHTRVLTLSGAEW 60
EGSLRIIRNGIGI EHA IDLPGIKG+W L + D+TLVLSFVG TRVL L+G E
Sbjct: 403 EGSLRIIRNGIGIHEHASIDLPGIKGLWPLRSDPNRETDDTLVLSFVGQTRVLMLNGEEV 462
Query: 61 GFHLLRGF 68
L GF
Sbjct: 463 EETELMGF 470
Score = 87.0 bits (214), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 42/81 (51%), Positives = 59/81 (72%)
Query: 625 NFTSSTDLNLVVAKNNRIEIHTVTPEGLRPVKEIFLYGKIAVMKFFRGPTDKKDLLFIIT 684
+FTS+ DLNL++AKN R+EI+ VT EGLRPVKE+ +YGKIAVM+ FR + KDLLFI+T
Sbjct: 41 HFTSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGKIAVMELFRPKGESKDLLFILT 100
Query: 685 QRTDLNLVVAKNNRIEIHTVT 705
+ + ++ K + I +T
Sbjct: 101 AKYNACILEYKQSGESIDIIT 121
>pdb|3EI1|A Chain A, Structure Of Hsddb1-Drddb2 Bound To A 14 Bp 6-4
Photoproduct Containing Dna-Duplex
pdb|3EI2|A Chain A, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Abasic Site
Containing Dna-Duplex
pdb|3EI3|A Chain A, Structure Of The Hsddb1-Drddb2 Complex
Length = 1158
Score = 684 bits (1766), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 344/544 (63%), Positives = 409/544 (75%), Gaps = 14/544 (2%)
Query: 81 RYLLGDLAGRLFXXXXXXXXXXDGTFSVKEPKVELLGEISIPECLTYLDNGVVFVGSRLG 140
RYLLGD+ GRLF DGT ++K+ +VELLGE SI ECLTYLDNGVVFVGSRLG
Sbjct: 288 RYLLGDMEGRLFMLLLEKEEQMDGTVTLKDLRVELLGETSIAECLTYLDNGVVFVGSRLG 347
Query: 141 DSQLVKLNRSPDENGTYVSVMESFTNLAPIIDMVVVDLERQGQGQLVTCSGGFKEGSLRI 200
DSQLVKLN +E G+YV ME+FTNL PI+DM VVDLERQGQGQLVTCSG FKEGSLRI
Sbjct: 348 DSQLVKLNVDSNEQGSYVVAMETFTNLGPIVDMCVVDLERQGQGQLVTCSGAFKEGSLRI 407
Query: 201 IRNGIGIEEHACIDLPGIKGIWALSIGSPKNLDNTLVLSFVGHTRVLTLSGAEVEETEMG 260
IRNGIGI EHA IDLPGIKG+W L + D+TLVLSFVG TRVL L+G EVEETE+
Sbjct: 408 IRNGIGIHEHASIDLPGIKGLWPLRSDPNRETDDTLVLSFVGQTRVLMLNGEEVEETELM 467
Query: 261 GFTSDQQTFYCGNVDPRTVLQVTPSAAILISTESKARVSSWEPPNGKSISVVSCNKNQVL 320
GF DQQTF+CGNV + ++Q+T ++ L+S E KA VS W+ P K+ISV SCN +QV+
Sbjct: 468 GFVDDQQTFFCGNVAHQQLIQITSASVRLVSQEPKALVSEWKEPQAKNISVASCNSSQVV 527
Query: 321 CATGCDVYYLEVHGSEIKQLAHRALEYEVACLDISPLSNEETSSEPAKAQLAAVGLWTDI 380
A G +YYL++H E++Q++H +E+EVACLDI+PL + S L A+GLWTDI
Sbjct: 528 VAVGRALYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGLSP-----LCAIGLWTDI 582
Query: 381 SARLLSLPSLEEVCKEPLGGEIIPRSILMTCFEGHCYLLVALGDGSMFYFSLDPASGRLT 440
SAR+L LPS E + KE LGGEIIPRSILMT FE YLL ALGDG++FYF L+ +G L+
Sbjct: 583 SARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLLS 642
Query: 441 DKKKVTLGTQPTVLKTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLRQVNHMCSLNA 500
D+KKVTLGTQPTVL+TFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNL++VN+MC LN+
Sbjct: 643 DRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLKEVNYMCPLNS 702
Query: 501 ESYPDSLALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQE 560
+ YPDSLALA +ST T GTIDEIQKLHIRTVPL E+PR+I YQE SQ FGV+++RI++Q+
Sbjct: 703 DGYPDSLALANNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQD 762
Query: 561 -ADGSTPVRPXXXXXXXXXXXXXXXXXXYIKPGSTKQSTANQPADFNMEVEVHNLLIIDQ 619
+ G+T +RP STA F EVEVHNLLIIDQ
Sbjct: 763 TSGGTTALRPSASTQALSSSVSSSK--------LFSSSTAPHETSFGEEVEVHNLLIIDQ 814
Query: 620 NTFE 623
+TFE
Sbjct: 815 HTFE 818
Score = 386 bits (991), Expect = e-107, Method: Compositional matrix adjust.
Identities = 181/284 (63%), Positives = 227/284 (79%)
Query: 684 TQRTDLNLVVAKNNRIEIHTVTPEGLRPVKEIFLYGKIAVMKFFRGPTDKKDLLFIITQR 743
T DLNL++AKN R+EI+ VT EGLRPVKE+ +YGKIAVM+ FR + KDLLFI+T +
Sbjct: 42 TSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGKIAVMELFRPKGESKDLLFILTAK 101
Query: 744 YNAMILECRGDIDNLEILTKAHGNVSDRIGKPSENGIIAIIDPEARVIGLRLYNGLFKII 803
YNA ILE + ++++I+T+AHGNV DRIG+PSE GII IIDPE R+IGLRLY+GLFK+I
Sbjct: 102 YNACILEYKQSGESIDIITRAHGNVQDRIGRPSETGIIGIIDPECRMIGLRLYDGLFKVI 161
Query: 804 PLEKDNFELKASSIRMEELEIQDVQFLHGCQNPTIICIHQDVNGRHVKTHEISLKEKEFT 863
PL++DN ELKA +IR+EEL + DV+FL+GCQ PTI ++QD GRHVKT+E+SL+EKEF
Sbjct: 162 PLDRDNKELKAFNIRLEELHVIDVKFLYGCQAPTICFVYQDPQGRHVKTYEVSLREKEFN 221
Query: 864 KTPWKQDNIEMEASLVIPVPEPLGGAIIIGQESILYHSGKSYVAVAPQIIKSSTIVCYAK 923
K PWKQ+N+E EAS+VI VPEP GGAIIIGQESI YH+G Y+A+AP IIK STIVC+ +
Sbjct: 222 KGPWKQENVEAEASMVIAVPEPFGGAIIIGQESITYHNGDKYLAIAPPIIKQSTIVCHNR 281
Query: 924 VDANGERYLLGDLAGRLFXXXXXXXXXXDGTFSVKEPKVELLGE 967
VD NG RYLLGD+ GRLF DGT ++K+ +VELLGE
Sbjct: 282 VDPNGSRYLLGDMEGRLFMLLLEKEEQMDGTVTLKDLRVELLGE 325
Score = 369 bits (946), Expect = e-102, Method: Compositional matrix adjust.
Identities = 167/226 (73%), Positives = 197/226 (87%)
Query: 991 TANQPADFNMEVEVHNLLIIDQNTFEILHAHQLFPGEYALSLISSKFGEDPNTYFVLGTA 1050
TA F EVEVHNLLIIDQ+TFE+LHAHQ EYALSL+S K G+DPNTYF++GTA
Sbjct: 793 TAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTA 852
Query: 1051 VVHPEENEPKQGRIIIFHYDDGKLQQIAEKEIKGACYSMCEFNGKLLASINSTVRLFEWT 1110
+V+PEE EPKQGRI++F Y DGKLQ +AEKE+KGA YSM EFNGKLLASINSTVRL+EWT
Sbjct: 853 MVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWT 912
Query: 1111 NEKELRLECSHFNNIIALFLKVKGDFILVGDLMRSLTLLQYKTMEGSFEEISRDYNPNWM 1170
EKELR EC+H+NNI+AL+LK KGDFILVGDLMRS+ LL YK MEG+FEEI+RD+NPNWM
Sbjct: 913 TEKELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWM 972
Query: 1171 TSIEILDDELFLGAENSYNLFICQKDSAATSDEDRTHLQEVGTVHL 1216
+++EILDD+ FLGAEN++NLF+CQKDSAAT+DE+R HLQEVG HL
Sbjct: 973 SAVEILDDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFHL 1018
Score = 87.8 bits (216), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 45/68 (66%), Positives = 49/68 (72%)
Query: 1 EGSLRIIRNGIGIEEHACIDLPGIKGIWALSIGSPKNLDNTLVLSFVGHTRVLTLSGAEW 60
EGSLRIIRNGIGI EHA IDLPGIKG+W L + D+TLVLSFVG TRVL L+G E
Sbjct: 402 EGSLRIIRNGIGIHEHASIDLPGIKGLWPLRSDPNRETDDTLVLSFVGQTRVLMLNGEEV 461
Query: 61 GFHLLRGF 68
L GF
Sbjct: 462 EETELMGF 469
Score = 86.7 bits (213), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 42/81 (51%), Positives = 59/81 (72%)
Query: 625 NFTSSTDLNLVVAKNNRIEIHTVTPEGLRPVKEIFLYGKIAVMKFFRGPTDKKDLLFIIT 684
+FTS+ DLNL++AKN R+EI+ VT EGLRPVKE+ +YGKIAVM+ FR + KDLLFI+T
Sbjct: 40 HFTSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGKIAVMELFRPKGESKDLLFILT 99
Query: 685 QRTDLNLVVAKNNRIEIHTVT 705
+ + ++ K + I +T
Sbjct: 100 AKYNACILEYKQSGESIDIIT 120
>pdb|3E0C|A Chain A, Crystal Structure Of Dna Damage-Binding Protein 1(Ddb1)
Length = 1140
Score = 684 bits (1765), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 344/544 (63%), Positives = 409/544 (75%), Gaps = 14/544 (2%)
Query: 81 RYLLGDLAGRLFXXXXXXXXXXDGTFSVKEPKVELLGEISIPECLTYLDNGVVFVGSRLG 140
RYLLGD+ GRLF DGT ++K+ +VELLGE SI ECLTYLDNGVVFVGSRLG
Sbjct: 270 RYLLGDMEGRLFMLLLEKEEQMDGTVTLKDLRVELLGETSIAECLTYLDNGVVFVGSRLG 329
Query: 141 DSQLVKLNRSPDENGTYVSVMESFTNLAPIIDMVVVDLERQGQGQLVTCSGGFKEGSLRI 200
DSQLVKLN +E G+YV ME+FTNL PI+DM VVDLERQGQGQLVTCSG FKEGSLRI
Sbjct: 330 DSQLVKLNVDSNEQGSYVVAMETFTNLGPIVDMCVVDLERQGQGQLVTCSGAFKEGSLRI 389
Query: 201 IRNGIGIEEHACIDLPGIKGIWALSIGSPKNLDNTLVLSFVGHTRVLTLSGAEVEETEMG 260
IRNGIGI EHA IDLPGIKG+W L + D+TLVLSFVG TRVL L+G EVEETE+
Sbjct: 390 IRNGIGIHEHASIDLPGIKGLWPLRSDPNRETDDTLVLSFVGQTRVLMLNGEEVEETELM 449
Query: 261 GFTSDQQTFYCGNVDPRTVLQVTPSAAILISTESKARVSSWEPPNGKSISVVSCNKNQVL 320
GF DQQTF+CGNV + ++Q+T ++ L+S E KA VS W+ P K+ISV SCN +QV+
Sbjct: 450 GFVDDQQTFFCGNVAHQQLIQITSASVRLVSQEPKALVSEWKEPQAKNISVASCNSSQVV 509
Query: 321 CATGCDVYYLEVHGSEIKQLAHRALEYEVACLDISPLSNEETSSEPAKAQLAAVGLWTDI 380
A G +YYL++H E++Q++H +E+EVACLDI+PL + S L A+GLWTDI
Sbjct: 510 VAVGRALYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGLSP-----LCAIGLWTDI 564
Query: 381 SARLLSLPSLEEVCKEPLGGEIIPRSILMTCFEGHCYLLVALGDGSMFYFSLDPASGRLT 440
SAR+L LPS E + KE LGGEIIPRSILMT FE YLL ALGDG++FYF L+ +G L+
Sbjct: 565 SARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLLS 624
Query: 441 DKKKVTLGTQPTVLKTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLRQVNHMCSLNA 500
D+KKVTLGTQPTVL+TFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNL++VN+MC LN+
Sbjct: 625 DRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLKEVNYMCPLNS 684
Query: 501 ESYPDSLALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQE 560
+ YPDSLALA +ST T GTIDEIQKLHIRTVPL E+PR+I YQE SQ FGV+++RI++Q+
Sbjct: 685 DGYPDSLALANNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQD 744
Query: 561 -ADGSTPVRPXXXXXXXXXXXXXXXXXXYIKPGSTKQSTANQPADFNMEVEVHNLLIIDQ 619
+ G+T +RP STA F EVEVHNLLIIDQ
Sbjct: 745 TSGGTTALRPSASTQALSSSVSSSK--------LFSSSTAPHETSFGEEVEVHNLLIIDQ 796
Query: 620 NTFE 623
+TFE
Sbjct: 797 HTFE 800
Score = 386 bits (991), Expect = e-107, Method: Compositional matrix adjust.
Identities = 181/284 (63%), Positives = 227/284 (79%)
Query: 684 TQRTDLNLVVAKNNRIEIHTVTPEGLRPVKEIFLYGKIAVMKFFRGPTDKKDLLFIITQR 743
T DLNL++AKN R+EI+ VT EGLRPVKE+ +YGKIAVM+ FR + KDLLFI+T +
Sbjct: 24 TSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGKIAVMELFRPKGESKDLLFILTAK 83
Query: 744 YNAMILECRGDIDNLEILTKAHGNVSDRIGKPSENGIIAIIDPEARVIGLRLYNGLFKII 803
YNA ILE + ++++I+T+AHGNV DRIG+PSE GII IIDPE R+IGLRLY+GLFK+I
Sbjct: 84 YNACILEYKQSGESIDIITRAHGNVQDRIGRPSETGIIGIIDPECRMIGLRLYDGLFKVI 143
Query: 804 PLEKDNFELKASSIRMEELEIQDVQFLHGCQNPTIICIHQDVNGRHVKTHEISLKEKEFT 863
PL++DN ELKA +IR+EEL + DV+FL+GCQ PTI ++QD GRHVKT+E+SL+EKEF
Sbjct: 144 PLDRDNKELKAFNIRLEELHVIDVKFLYGCQAPTICFVYQDPQGRHVKTYEVSLREKEFN 203
Query: 864 KTPWKQDNIEMEASLVIPVPEPLGGAIIIGQESILYHSGKSYVAVAPQIIKSSTIVCYAK 923
K PWKQ+N+E EAS+VI VPEP GGAIIIGQESI YH+G Y+A+AP IIK STIVC+ +
Sbjct: 204 KGPWKQENVEAEASMVIAVPEPFGGAIIIGQESITYHNGDKYLAIAPPIIKQSTIVCHNR 263
Query: 924 VDANGERYLLGDLAGRLFXXXXXXXXXXDGTFSVKEPKVELLGE 967
VD NG RYLLGD+ GRLF DGT ++K+ +VELLGE
Sbjct: 264 VDPNGSRYLLGDMEGRLFMLLLEKEEQMDGTVTLKDLRVELLGE 307
Score = 369 bits (946), Expect = e-102, Method: Compositional matrix adjust.
Identities = 167/226 (73%), Positives = 197/226 (87%)
Query: 991 TANQPADFNMEVEVHNLLIIDQNTFEILHAHQLFPGEYALSLISSKFGEDPNTYFVLGTA 1050
TA F EVEVHNLLIIDQ+TFE+LHAHQ EYALSL+S K G+DPNTYF++GTA
Sbjct: 775 TAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTA 834
Query: 1051 VVHPEENEPKQGRIIIFHYDDGKLQQIAEKEIKGACYSMCEFNGKLLASINSTVRLFEWT 1110
+V+PEE EPKQGRI++F Y DGKLQ +AEKE+KGA YSM EFNGKLLASINSTVRL+EWT
Sbjct: 835 MVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWT 894
Query: 1111 NEKELRLECSHFNNIIALFLKVKGDFILVGDLMRSLTLLQYKTMEGSFEEISRDYNPNWM 1170
EKELR EC+H+NNI+AL+LK KGDFILVGDLMRS+ LL YK MEG+FEEI+RD+NPNWM
Sbjct: 895 TEKELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWM 954
Query: 1171 TSIEILDDELFLGAENSYNLFICQKDSAATSDEDRTHLQEVGTVHL 1216
+++EILDD+ FLGAEN++NLF+CQKDSAAT+DE+R HLQEVG HL
Sbjct: 955 SAVEILDDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFHL 1000
Score = 87.8 bits (216), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 45/68 (66%), Positives = 49/68 (72%)
Query: 1 EGSLRIIRNGIGIEEHACIDLPGIKGIWALSIGSPKNLDNTLVLSFVGHTRVLTLSGAEW 60
EGSLRIIRNGIGI EHA IDLPGIKG+W L + D+TLVLSFVG TRVL L+G E
Sbjct: 384 EGSLRIIRNGIGIHEHASIDLPGIKGLWPLRSDPNRETDDTLVLSFVGQTRVLMLNGEEV 443
Query: 61 GFHLLRGF 68
L GF
Sbjct: 444 EETELMGF 451
Score = 86.7 bits (213), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 42/81 (51%), Positives = 59/81 (72%)
Query: 625 NFTSSTDLNLVVAKNNRIEIHTVTPEGLRPVKEIFLYGKIAVMKFFRGPTDKKDLLFIIT 684
+FTS+ DLNL++AKN R+EI+ VT EGLRPVKE+ +YGKIAVM+ FR + KDLLFI+T
Sbjct: 22 HFTSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGKIAVMELFRPKGESKDLLFILT 81
Query: 685 QRTDLNLVVAKNNRIEIHTVT 705
+ + ++ K + I +T
Sbjct: 82 AKYNACILEYKQSGESIDIIT 102
>pdb|4E54|A Chain A, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
pdb|4E5Z|A Chain A, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 1150
Score = 684 bits (1765), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 344/544 (63%), Positives = 409/544 (75%), Gaps = 14/544 (2%)
Query: 81 RYLLGDLAGRLFXXXXXXXXXXDGTFSVKEPKVELLGEISIPECLTYLDNGVVFVGSRLG 140
RYLLGD+ GRLF DGT ++K+ +VELLGE SI ECLTYLDNGVVFVGSRLG
Sbjct: 280 RYLLGDMEGRLFMLLLEKEEQMDGTVTLKDLRVELLGETSIAECLTYLDNGVVFVGSRLG 339
Query: 141 DSQLVKLNRSPDENGTYVSVMESFTNLAPIIDMVVVDLERQGQGQLVTCSGGFKEGSLRI 200
DSQLVKLN +E G+YV ME+FTNL PI+DM VVDLERQGQGQLVTCSG FKEGSLRI
Sbjct: 340 DSQLVKLNVDSNEQGSYVVAMETFTNLGPIVDMCVVDLERQGQGQLVTCSGAFKEGSLRI 399
Query: 201 IRNGIGIEEHACIDLPGIKGIWALSIGSPKNLDNTLVLSFVGHTRVLTLSGAEVEETEMG 260
IRNGIGI EHA IDLPGIKG+W L + D+TLVLSFVG TRVL L+G EVEETE+
Sbjct: 400 IRNGIGIHEHASIDLPGIKGLWPLRSDPNRETDDTLVLSFVGQTRVLMLNGEEVEETELM 459
Query: 261 GFTSDQQTFYCGNVDPRTVLQVTPSAAILISTESKARVSSWEPPNGKSISVVSCNKNQVL 320
GF DQQTF+CGNV + ++Q+T ++ L+S E KA VS W+ P K+ISV SCN +QV+
Sbjct: 460 GFVDDQQTFFCGNVAHQQLIQITSASVRLVSQEPKALVSEWKEPQAKNISVASCNSSQVV 519
Query: 321 CATGCDVYYLEVHGSEIKQLAHRALEYEVACLDISPLSNEETSSEPAKAQLAAVGLWTDI 380
A G +YYL++H E++Q++H +E+EVACLDI+PL + S L A+GLWTDI
Sbjct: 520 VAVGRALYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGLSP-----LCAIGLWTDI 574
Query: 381 SARLLSLPSLEEVCKEPLGGEIIPRSILMTCFEGHCYLLVALGDGSMFYFSLDPASGRLT 440
SAR+L LPS E + KE LGGEIIPRSILMT FE YLL ALGDG++FYF L+ +G L+
Sbjct: 575 SARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLLS 634
Query: 441 DKKKVTLGTQPTVLKTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLRQVNHMCSLNA 500
D+KKVTLGTQPTVL+TFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNL++VN+MC LN+
Sbjct: 635 DRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLKEVNYMCPLNS 694
Query: 501 ESYPDSLALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQE 560
+ YPDSLALA +ST T GTIDEIQKLHIRTVPL E+PR+I YQE SQ FGV+++RI++Q+
Sbjct: 695 DGYPDSLALANNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQD 754
Query: 561 -ADGSTPVRPXXXXXXXXXXXXXXXXXXYIKPGSTKQSTANQPADFNMEVEVHNLLIIDQ 619
+ G+T +RP STA F EVEVHNLLIIDQ
Sbjct: 755 TSGGTTALRPSASTQALSSSVSSSK--------LFSSSTAPHETSFGEEVEVHNLLIIDQ 806
Query: 620 NTFE 623
+TFE
Sbjct: 807 HTFE 810
Score = 386 bits (991), Expect = e-107, Method: Compositional matrix adjust.
Identities = 181/284 (63%), Positives = 227/284 (79%)
Query: 684 TQRTDLNLVVAKNNRIEIHTVTPEGLRPVKEIFLYGKIAVMKFFRGPTDKKDLLFIITQR 743
T DLNL++AKN R+EI+ VT EGLRPVKE+ +YGKIAVM+ FR + KDLLFI+T +
Sbjct: 34 TSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGKIAVMELFRPKGESKDLLFILTAK 93
Query: 744 YNAMILECRGDIDNLEILTKAHGNVSDRIGKPSENGIIAIIDPEARVIGLRLYNGLFKII 803
YNA ILE + ++++I+T+AHGNV DRIG+PSE GII IIDPE R+IGLRLY+GLFK+I
Sbjct: 94 YNACILEYKQSGESIDIITRAHGNVQDRIGRPSETGIIGIIDPECRMIGLRLYDGLFKVI 153
Query: 804 PLEKDNFELKASSIRMEELEIQDVQFLHGCQNPTIICIHQDVNGRHVKTHEISLKEKEFT 863
PL++DN ELKA +IR+EEL + DV+FL+GCQ PTI ++QD GRHVKT+E+SL+EKEF
Sbjct: 154 PLDRDNKELKAFNIRLEELHVIDVKFLYGCQAPTICFVYQDPQGRHVKTYEVSLREKEFN 213
Query: 864 KTPWKQDNIEMEASLVIPVPEPLGGAIIIGQESILYHSGKSYVAVAPQIIKSSTIVCYAK 923
K PWKQ+N+E EAS+VI VPEP GGAIIIGQESI YH+G Y+A+AP IIK STIVC+ +
Sbjct: 214 KGPWKQENVEAEASMVIAVPEPFGGAIIIGQESITYHNGDKYLAIAPPIIKQSTIVCHNR 273
Query: 924 VDANGERYLLGDLAGRLFXXXXXXXXXXDGTFSVKEPKVELLGE 967
VD NG RYLLGD+ GRLF DGT ++K+ +VELLGE
Sbjct: 274 VDPNGSRYLLGDMEGRLFMLLLEKEEQMDGTVTLKDLRVELLGE 317
Score = 369 bits (946), Expect = e-102, Method: Compositional matrix adjust.
Identities = 167/226 (73%), Positives = 197/226 (87%)
Query: 991 TANQPADFNMEVEVHNLLIIDQNTFEILHAHQLFPGEYALSLISSKFGEDPNTYFVLGTA 1050
TA F EVEVHNLLIIDQ+TFE+LHAHQ EYALSL+S K G+DPNTYF++GTA
Sbjct: 785 TAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTA 844
Query: 1051 VVHPEENEPKQGRIIIFHYDDGKLQQIAEKEIKGACYSMCEFNGKLLASINSTVRLFEWT 1110
+V+PEE EPKQGRI++F Y DGKLQ +AEKE+KGA YSM EFNGKLLASINSTVRL+EWT
Sbjct: 845 MVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWT 904
Query: 1111 NEKELRLECSHFNNIIALFLKVKGDFILVGDLMRSLTLLQYKTMEGSFEEISRDYNPNWM 1170
EKELR EC+H+NNI+AL+LK KGDFILVGDLMRS+ LL YK MEG+FEEI+RD+NPNWM
Sbjct: 905 TEKELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWM 964
Query: 1171 TSIEILDDELFLGAENSYNLFICQKDSAATSDEDRTHLQEVGTVHL 1216
+++EILDD+ FLGAEN++NLF+CQKDSAAT+DE+R HLQEVG HL
Sbjct: 965 SAVEILDDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFHL 1010
Score = 87.8 bits (216), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 45/68 (66%), Positives = 49/68 (72%)
Query: 1 EGSLRIIRNGIGIEEHACIDLPGIKGIWALSIGSPKNLDNTLVLSFVGHTRVLTLSGAEW 60
EGSLRIIRNGIGI EHA IDLPGIKG+W L + D+TLVLSFVG TRVL L+G E
Sbjct: 394 EGSLRIIRNGIGIHEHASIDLPGIKGLWPLRSDPNRETDDTLVLSFVGQTRVLMLNGEEV 453
Query: 61 GFHLLRGF 68
L GF
Sbjct: 454 EETELMGF 461
Score = 86.7 bits (213), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 42/81 (51%), Positives = 59/81 (72%)
Query: 625 NFTSSTDLNLVVAKNNRIEIHTVTPEGLRPVKEIFLYGKIAVMKFFRGPTDKKDLLFIIT 684
+FTS+ DLNL++AKN R+EI+ VT EGLRPVKE+ +YGKIAVM+ FR + KDLLFI+T
Sbjct: 32 HFTSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGKIAVMELFRPKGESKDLLFILT 91
Query: 685 QRTDLNLVVAKNNRIEIHTVT 705
+ + ++ K + I +T
Sbjct: 92 AKYNACILEYKQSGESIDIIT 112
>pdb|4A0L|A Chain A, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|C Chain C, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 1144
Score = 684 bits (1765), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 344/544 (63%), Positives = 409/544 (75%), Gaps = 14/544 (2%)
Query: 81 RYLLGDLAGRLFXXXXXXXXXXDGTFSVKEPKVELLGEISIPECLTYLDNGVVFVGSRLG 140
RYLLGD+ GRLF DGT ++K+ +VELLGE SI ECLTYLDNGVVFVGSRLG
Sbjct: 274 RYLLGDMEGRLFMLLLEKEEQMDGTVTLKDLRVELLGETSIAECLTYLDNGVVFVGSRLG 333
Query: 141 DSQLVKLNRSPDENGTYVSVMESFTNLAPIIDMVVVDLERQGQGQLVTCSGGFKEGSLRI 200
DSQLVKLN +E G+YV ME+FTNL PI+DM VVDLERQGQGQLVTCSG FKEGSLRI
Sbjct: 334 DSQLVKLNVDSNEQGSYVVAMETFTNLGPIVDMCVVDLERQGQGQLVTCSGAFKEGSLRI 393
Query: 201 IRNGIGIEEHACIDLPGIKGIWALSIGSPKNLDNTLVLSFVGHTRVLTLSGAEVEETEMG 260
IRNGIGI EHA IDLPGIKG+W L + D+TLVLSFVG TRVL L+G EVEETE+
Sbjct: 394 IRNGIGIHEHASIDLPGIKGLWPLRSDPNRETDDTLVLSFVGQTRVLMLNGEEVEETELM 453
Query: 261 GFTSDQQTFYCGNVDPRTVLQVTPSAAILISTESKARVSSWEPPNGKSISVVSCNKNQVL 320
GF DQQTF+CGNV + ++Q+T ++ L+S E KA VS W+ P K+ISV SCN +QV+
Sbjct: 454 GFVDDQQTFFCGNVAHQQLIQITSASVRLVSQEPKALVSEWKEPQAKNISVASCNSSQVV 513
Query: 321 CATGCDVYYLEVHGSEIKQLAHRALEYEVACLDISPLSNEETSSEPAKAQLAAVGLWTDI 380
A G +YYL++H E++Q++H +E+EVACLDI+PL + S L A+GLWTDI
Sbjct: 514 VAVGRALYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGLSP-----LCAIGLWTDI 568
Query: 381 SARLLSLPSLEEVCKEPLGGEIIPRSILMTCFEGHCYLLVALGDGSMFYFSLDPASGRLT 440
SAR+L LPS E + KE LGGEIIPRSILMT FE YLL ALGDG++FYF L+ +G L+
Sbjct: 569 SARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLLS 628
Query: 441 DKKKVTLGTQPTVLKTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLRQVNHMCSLNA 500
D+KKVTLGTQPTVL+TFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNL++VN+MC LN+
Sbjct: 629 DRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLKEVNYMCPLNS 688
Query: 501 ESYPDSLALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQE 560
+ YPDSLALA +ST T GTIDEIQKLHIRTVPL E+PR+I YQE SQ FGV+++RI++Q+
Sbjct: 689 DGYPDSLALANNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQD 748
Query: 561 -ADGSTPVRPXXXXXXXXXXXXXXXXXXYIKPGSTKQSTANQPADFNMEVEVHNLLIIDQ 619
+ G+T +RP STA F EVEVHNLLIIDQ
Sbjct: 749 TSGGTTALRPSASTQALSSSVSSSK--------LFSSSTAPHETSFGEEVEVHNLLIIDQ 800
Query: 620 NTFE 623
+TFE
Sbjct: 801 HTFE 804
Score = 386 bits (991), Expect = e-107, Method: Compositional matrix adjust.
Identities = 181/284 (63%), Positives = 227/284 (79%)
Query: 684 TQRTDLNLVVAKNNRIEIHTVTPEGLRPVKEIFLYGKIAVMKFFRGPTDKKDLLFIITQR 743
T DLNL++AKN R+EI+ VT EGLRPVKE+ +YGKIAVM+ FR + KDLLFI+T +
Sbjct: 28 TSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGKIAVMELFRPKGESKDLLFILTAK 87
Query: 744 YNAMILECRGDIDNLEILTKAHGNVSDRIGKPSENGIIAIIDPEARVIGLRLYNGLFKII 803
YNA ILE + ++++I+T+AHGNV DRIG+PSE GII IIDPE R+IGLRLY+GLFK+I
Sbjct: 88 YNACILEYKQSGESIDIITRAHGNVQDRIGRPSETGIIGIIDPECRMIGLRLYDGLFKVI 147
Query: 804 PLEKDNFELKASSIRMEELEIQDVQFLHGCQNPTIICIHQDVNGRHVKTHEISLKEKEFT 863
PL++DN ELKA +IR+EEL + DV+FL+GCQ PTI ++QD GRHVKT+E+SL+EKEF
Sbjct: 148 PLDRDNKELKAFNIRLEELHVIDVKFLYGCQAPTICFVYQDPQGRHVKTYEVSLREKEFN 207
Query: 864 KTPWKQDNIEMEASLVIPVPEPLGGAIIIGQESILYHSGKSYVAVAPQIIKSSTIVCYAK 923
K PWKQ+N+E EAS+VI VPEP GGAIIIGQESI YH+G Y+A+AP IIK STIVC+ +
Sbjct: 208 KGPWKQENVEAEASMVIAVPEPFGGAIIIGQESITYHNGDKYLAIAPPIIKQSTIVCHNR 267
Query: 924 VDANGERYLLGDLAGRLFXXXXXXXXXXDGTFSVKEPKVELLGE 967
VD NG RYLLGD+ GRLF DGT ++K+ +VELLGE
Sbjct: 268 VDPNGSRYLLGDMEGRLFMLLLEKEEQMDGTVTLKDLRVELLGE 311
Score = 369 bits (946), Expect = e-102, Method: Compositional matrix adjust.
Identities = 167/226 (73%), Positives = 197/226 (87%)
Query: 991 TANQPADFNMEVEVHNLLIIDQNTFEILHAHQLFPGEYALSLISSKFGEDPNTYFVLGTA 1050
TA F EVEVHNLLIIDQ+TFE+LHAHQ EYALSL+S K G+DPNTYF++GTA
Sbjct: 779 TAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTA 838
Query: 1051 VVHPEENEPKQGRIIIFHYDDGKLQQIAEKEIKGACYSMCEFNGKLLASINSTVRLFEWT 1110
+V+PEE EPKQGRI++F Y DGKLQ +AEKE+KGA YSM EFNGKLLASINSTVRL+EWT
Sbjct: 839 MVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWT 898
Query: 1111 NEKELRLECSHFNNIIALFLKVKGDFILVGDLMRSLTLLQYKTMEGSFEEISRDYNPNWM 1170
EKELR EC+H+NNI+AL+LK KGDFILVGDLMRS+ LL YK MEG+FEEI+RD+NPNWM
Sbjct: 899 TEKELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWM 958
Query: 1171 TSIEILDDELFLGAENSYNLFICQKDSAATSDEDRTHLQEVGTVHL 1216
+++EILDD+ FLGAEN++NLF+CQKDSAAT+DE+R HLQEVG HL
Sbjct: 959 SAVEILDDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFHL 1004
Score = 87.8 bits (216), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 45/68 (66%), Positives = 49/68 (72%)
Query: 1 EGSLRIIRNGIGIEEHACIDLPGIKGIWALSIGSPKNLDNTLVLSFVGHTRVLTLSGAEW 60
EGSLRIIRNGIGI EHA IDLPGIKG+W L + D+TLVLSFVG TRVL L+G E
Sbjct: 388 EGSLRIIRNGIGIHEHASIDLPGIKGLWPLRSDPNRETDDTLVLSFVGQTRVLMLNGEEV 447
Query: 61 GFHLLRGF 68
L GF
Sbjct: 448 EETELMGF 455
Score = 86.7 bits (213), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 42/81 (51%), Positives = 59/81 (72%)
Query: 625 NFTSSTDLNLVVAKNNRIEIHTVTPEGLRPVKEIFLYGKIAVMKFFRGPTDKKDLLFIIT 684
+FTS+ DLNL++AKN R+EI+ VT EGLRPVKE+ +YGKIAVM+ FR + KDLLFI+T
Sbjct: 26 HFTSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGKIAVMELFRPKGESKDLLFILT 85
Query: 685 QRTDLNLVVAKNNRIEIHTVT 705
+ + ++ K + I +T
Sbjct: 86 AKYNACILEYKQSGESIDIIT 106
>pdb|2B5L|A Chain A, Crystal Structure Of Ddb1 In Complex With Simian Virus 5 V
Protein
pdb|2B5L|B Chain B, Crystal Structure Of Ddb1 In Complex With Simian Virus 5 V
Protein
pdb|2B5M|A Chain A, Crystal Structure Of Ddb1
pdb|2HYE|A Chain A, Crystal Structure Of The Ddb1-cul4a-rbx1-sv5v Complex
Length = 1140
Score = 681 bits (1756), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 343/544 (63%), Positives = 408/544 (75%), Gaps = 14/544 (2%)
Query: 81 RYLLGDLAGRLFXXXXXXXXXXDGTFSVKEPKVELLGEISIPECLTYLDNGVVFVGSRLG 140
RYLLGD+ GRLF DGT ++K+ +VELLGE SI ECLTYLDNGVVFVGSRLG
Sbjct: 270 RYLLGDMEGRLFMLLLEKEEQMDGTVTLKDLRVELLGETSIAECLTYLDNGVVFVGSRLG 329
Query: 141 DSQLVKLNRSPDENGTYVSVMESFTNLAPIIDMVVVDLERQGQGQLVTCSGGFKEGSLRI 200
DSQLVKLN +E G+YV ME+FTNL PI+DM VVDLERQGQGQLVTCSG FKEGSLRI
Sbjct: 330 DSQLVKLNVDSNEQGSYVVAMETFTNLGPIVDMCVVDLERQGQGQLVTCSGAFKEGSLRI 389
Query: 201 IRNGIGIEEHACIDLPGIKGIWALSIGSPKNLDNTLVLSFVGHTRVLTLSGAEVEETEMG 260
IRNGIGI EHA IDLPGIKG+W L + +TLVLSFVG TRVL L+G EVEETE+
Sbjct: 390 IRNGIGIHEHASIDLPGIKGLWPLRSDPNRETYDTLVLSFVGQTRVLMLNGEEVEETELM 449
Query: 261 GFTSDQQTFYCGNVDPRTVLQVTPSAAILISTESKARVSSWEPPNGKSISVVSCNKNQVL 320
GF DQQTF+CGNV + ++Q+T ++ L+S E KA VS W+ P K+ISV SCN +QV+
Sbjct: 450 GFVDDQQTFFCGNVAHQQLIQITSASVRLVSQEPKALVSEWKEPQAKNISVASCNSSQVV 509
Query: 321 CATGCDVYYLEVHGSEIKQLAHRALEYEVACLDISPLSNEETSSEPAKAQLAAVGLWTDI 380
A G +YYL++H E++Q++H +E+EVACLDI+PL + S L A+GLWTDI
Sbjct: 510 VAVGRALYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGLSP-----LCAIGLWTDI 564
Query: 381 SARLLSLPSLEEVCKEPLGGEIIPRSILMTCFEGHCYLLVALGDGSMFYFSLDPASGRLT 440
SAR+L LPS E + KE LGGEIIPRSILMT FE YLL ALGDG++FYF L+ +G L+
Sbjct: 565 SARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLLS 624
Query: 441 DKKKVTLGTQPTVLKTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLRQVNHMCSLNA 500
D+KKVTLGTQPTVL+TFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNL++VN+MC LN+
Sbjct: 625 DRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLKEVNYMCPLNS 684
Query: 501 ESYPDSLALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQE 560
+ YPDSLALA +ST T GTIDEIQKLHIRTVPL E+PR+I YQE SQ FGV+++RI++Q+
Sbjct: 685 DGYPDSLALANNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQD 744
Query: 561 -ADGSTPVRPXXXXXXXXXXXXXXXXXXYIKPGSTKQSTANQPADFNMEVEVHNLLIIDQ 619
+ G+T +RP STA F EVEVHNLLIIDQ
Sbjct: 745 TSGGTTALRPSASTQALSSSVSSSK--------LFSSSTAPHETSFGEEVEVHNLLIIDQ 796
Query: 620 NTFE 623
+TFE
Sbjct: 797 HTFE 800
Score = 386 bits (991), Expect = e-107, Method: Compositional matrix adjust.
Identities = 181/284 (63%), Positives = 227/284 (79%)
Query: 684 TQRTDLNLVVAKNNRIEIHTVTPEGLRPVKEIFLYGKIAVMKFFRGPTDKKDLLFIITQR 743
T DLNL++AKN R+EI+ VT EGLRPVKE+ +YGKIAVM+ FR + KDLLFI+T +
Sbjct: 24 TSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGKIAVMELFRPKGESKDLLFILTAK 83
Query: 744 YNAMILECRGDIDNLEILTKAHGNVSDRIGKPSENGIIAIIDPEARVIGLRLYNGLFKII 803
YNA ILE + ++++I+T+AHGNV DRIG+PSE GII IIDPE R+IGLRLY+GLFK+I
Sbjct: 84 YNACILEYKQSGESIDIITRAHGNVQDRIGRPSETGIIGIIDPECRMIGLRLYDGLFKVI 143
Query: 804 PLEKDNFELKASSIRMEELEIQDVQFLHGCQNPTIICIHQDVNGRHVKTHEISLKEKEFT 863
PL++DN ELKA +IR+EEL + DV+FL+GCQ PTI ++QD GRHVKT+E+SL+EKEF
Sbjct: 144 PLDRDNKELKAFNIRLEELHVIDVKFLYGCQAPTICFVYQDPQGRHVKTYEVSLREKEFN 203
Query: 864 KTPWKQDNIEMEASLVIPVPEPLGGAIIIGQESILYHSGKSYVAVAPQIIKSSTIVCYAK 923
K PWKQ+N+E EAS+VI VPEP GGAIIIGQESI YH+G Y+A+AP IIK STIVC+ +
Sbjct: 204 KGPWKQENVEAEASMVIAVPEPFGGAIIIGQESITYHNGDKYLAIAPPIIKQSTIVCHNR 263
Query: 924 VDANGERYLLGDLAGRLFXXXXXXXXXXDGTFSVKEPKVELLGE 967
VD NG RYLLGD+ GRLF DGT ++K+ +VELLGE
Sbjct: 264 VDPNGSRYLLGDMEGRLFMLLLEKEEQMDGTVTLKDLRVELLGE 307
Score = 366 bits (939), Expect = e-101, Method: Compositional matrix adjust.
Identities = 165/226 (73%), Positives = 197/226 (87%)
Query: 991 TANQPADFNMEVEVHNLLIIDQNTFEILHAHQLFPGEYALSLISSKFGEDPNTYFVLGTA 1050
TA F EVEVHNLLIIDQ+TFE+LHAHQ EYALSL+S K G+DPNTYF++GTA
Sbjct: 775 TAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTA 834
Query: 1051 VVHPEENEPKQGRIIIFHYDDGKLQQIAEKEIKGACYSMCEFNGKLLASINSTVRLFEWT 1110
+V+PEE EPKQGRI++F Y DGKLQ +AEKE+KGA YSM EFNGKLLASINSTVRL+EWT
Sbjct: 835 MVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWT 894
Query: 1111 NEKELRLECSHFNNIIALFLKVKGDFILVGDLMRSLTLLQYKTMEGSFEEISRDYNPNWM 1170
EK++R EC+H+NNI+AL+LK KGDFILVGDLMRS+ LL YK MEG+FEEI+RD+NPNWM
Sbjct: 895 TEKDVRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWM 954
Query: 1171 TSIEILDDELFLGAENSYNLFICQKDSAATSDEDRTHLQEVGTVHL 1216
+++EILDD+ FLGAEN++NLF+CQKDSAAT+DE+R HLQEVG HL
Sbjct: 955 SAVEILDDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFHL 1000
Score = 87.0 bits (214), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 42/81 (51%), Positives = 59/81 (72%)
Query: 625 NFTSSTDLNLVVAKNNRIEIHTVTPEGLRPVKEIFLYGKIAVMKFFRGPTDKKDLLFIIT 684
+FTS+ DLNL++AKN R+EI+ VT EGLRPVKE+ +YGKIAVM+ FR + KDLLFI+T
Sbjct: 22 HFTSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGKIAVMELFRPKGESKDLLFILT 81
Query: 685 QRTDLNLVVAKNNRIEIHTVT 705
+ + ++ K + I +T
Sbjct: 82 AKYNACILEYKQSGESIDIIT 102
Score = 84.3 bits (207), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 44/68 (64%), Positives = 48/68 (70%)
Query: 1 EGSLRIIRNGIGIEEHACIDLPGIKGIWALSIGSPKNLDNTLVLSFVGHTRVLTLSGAEW 60
EGSLRIIRNGIGI EHA IDLPGIKG+W L + +TLVLSFVG TRVL L+G E
Sbjct: 384 EGSLRIIRNGIGIHEHASIDLPGIKGLWPLRSDPNRETYDTLVLSFVGQTRVLMLNGEEV 443
Query: 61 GFHLLRGF 68
L GF
Sbjct: 444 EETELMGF 451
>pdb|3EI4|A Chain A, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|C Chain C, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|E Chain E, Structure Of The Hsddb1-Hsddb2 Complex
Length = 1158
Score = 681 bits (1756), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 343/544 (63%), Positives = 408/544 (75%), Gaps = 14/544 (2%)
Query: 81 RYLLGDLAGRLFXXXXXXXXXXDGTFSVKEPKVELLGEISIPECLTYLDNGVVFVGSRLG 140
RYLLGD+ GRLF DGT ++K+ +VELLGE SI ECLTYLDNGVVFVGSRLG
Sbjct: 288 RYLLGDMEGRLFMLLLEKEEQMDGTVTLKDLRVELLGETSIAECLTYLDNGVVFVGSRLG 347
Query: 141 DSQLVKLNRSPDENGTYVSVMESFTNLAPIIDMVVVDLERQGQGQLVTCSGGFKEGSLRI 200
DSQLVKLN +E G+YV ME+FTNL PI+DM VVDLERQGQGQLVTCSG FKEGSLRI
Sbjct: 348 DSQLVKLNVDSNEQGSYVVAMETFTNLGPIVDMCVVDLERQGQGQLVTCSGAFKEGSLRI 407
Query: 201 IRNGIGIEEHACIDLPGIKGIWALSIGSPKNLDNTLVLSFVGHTRVLTLSGAEVEETEMG 260
IRNGIGI EHA IDLPGIKG+W L + +TLVLSFVG TRVL L+G EVEETE+
Sbjct: 408 IRNGIGIHEHASIDLPGIKGLWPLRSDPNRETYDTLVLSFVGQTRVLMLNGEEVEETELM 467
Query: 261 GFTSDQQTFYCGNVDPRTVLQVTPSAAILISTESKARVSSWEPPNGKSISVVSCNKNQVL 320
GF DQQTF+CGNV + ++Q+T ++ L+S E KA VS W+ P K+ISV SCN +QV+
Sbjct: 468 GFVDDQQTFFCGNVAHQQLIQITSASVRLVSQEPKALVSEWKEPQAKNISVASCNSSQVV 527
Query: 321 CATGCDVYYLEVHGSEIKQLAHRALEYEVACLDISPLSNEETSSEPAKAQLAAVGLWTDI 380
A G +YYL++H E++Q++H +E+EVACLDI+PL + S L A+GLWTDI
Sbjct: 528 VAVGRALYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGLSP-----LCAIGLWTDI 582
Query: 381 SARLLSLPSLEEVCKEPLGGEIIPRSILMTCFEGHCYLLVALGDGSMFYFSLDPASGRLT 440
SAR+L LPS E + KE LGGEIIPRSILMT FE YLL ALGDG++FYF L+ +G L+
Sbjct: 583 SARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLLS 642
Query: 441 DKKKVTLGTQPTVLKTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLRQVNHMCSLNA 500
D+KKVTLGTQPTVL+TFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNL++VN+MC LN+
Sbjct: 643 DRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLKEVNYMCPLNS 702
Query: 501 ESYPDSLALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQE 560
+ YPDSLALA +ST T GTIDEIQKLHIRTVPL E+PR+I YQE SQ FGV+++RI++Q+
Sbjct: 703 DGYPDSLALANNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQD 762
Query: 561 -ADGSTPVRPXXXXXXXXXXXXXXXXXXYIKPGSTKQSTANQPADFNMEVEVHNLLIIDQ 619
+ G+T +RP STA F EVEVHNLLIIDQ
Sbjct: 763 TSGGTTALRPSASTQALSSSVSSSK--------LFSSSTAPHETSFGEEVEVHNLLIIDQ 814
Query: 620 NTFE 623
+TFE
Sbjct: 815 HTFE 818
Score = 386 bits (991), Expect = e-107, Method: Compositional matrix adjust.
Identities = 181/284 (63%), Positives = 227/284 (79%)
Query: 684 TQRTDLNLVVAKNNRIEIHTVTPEGLRPVKEIFLYGKIAVMKFFRGPTDKKDLLFIITQR 743
T DLNL++AKN R+EI+ VT EGLRPVKE+ +YGKIAVM+ FR + KDLLFI+T +
Sbjct: 42 TSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGKIAVMELFRPKGESKDLLFILTAK 101
Query: 744 YNAMILECRGDIDNLEILTKAHGNVSDRIGKPSENGIIAIIDPEARVIGLRLYNGLFKII 803
YNA ILE + ++++I+T+AHGNV DRIG+PSE GII IIDPE R+IGLRLY+GLFK+I
Sbjct: 102 YNACILEYKQSGESIDIITRAHGNVQDRIGRPSETGIIGIIDPECRMIGLRLYDGLFKVI 161
Query: 804 PLEKDNFELKASSIRMEELEIQDVQFLHGCQNPTIICIHQDVNGRHVKTHEISLKEKEFT 863
PL++DN ELKA +IR+EEL + DV+FL+GCQ PTI ++QD GRHVKT+E+SL+EKEF
Sbjct: 162 PLDRDNKELKAFNIRLEELHVIDVKFLYGCQAPTICFVYQDPQGRHVKTYEVSLREKEFN 221
Query: 864 KTPWKQDNIEMEASLVIPVPEPLGGAIIIGQESILYHSGKSYVAVAPQIIKSSTIVCYAK 923
K PWKQ+N+E EAS+VI VPEP GGAIIIGQESI YH+G Y+A+AP IIK STIVC+ +
Sbjct: 222 KGPWKQENVEAEASMVIAVPEPFGGAIIIGQESITYHNGDKYLAIAPPIIKQSTIVCHNR 281
Query: 924 VDANGERYLLGDLAGRLFXXXXXXXXXXDGTFSVKEPKVELLGE 967
VD NG RYLLGD+ GRLF DGT ++K+ +VELLGE
Sbjct: 282 VDPNGSRYLLGDMEGRLFMLLLEKEEQMDGTVTLKDLRVELLGE 325
Score = 366 bits (939), Expect = e-101, Method: Compositional matrix adjust.
Identities = 165/226 (73%), Positives = 197/226 (87%)
Query: 991 TANQPADFNMEVEVHNLLIIDQNTFEILHAHQLFPGEYALSLISSKFGEDPNTYFVLGTA 1050
TA F EVEVHNLLIIDQ+TFE+LHAHQ EYALSL+S K G+DPNTYF++GTA
Sbjct: 793 TAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTA 852
Query: 1051 VVHPEENEPKQGRIIIFHYDDGKLQQIAEKEIKGACYSMCEFNGKLLASINSTVRLFEWT 1110
+V+PEE EPKQGRI++F Y DGKLQ +AEKE+KGA YSM EFNGKLLASINSTVRL+EWT
Sbjct: 853 MVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWT 912
Query: 1111 NEKELRLECSHFNNIIALFLKVKGDFILVGDLMRSLTLLQYKTMEGSFEEISRDYNPNWM 1170
EK++R EC+H+NNI+AL+LK KGDFILVGDLMRS+ LL YK MEG+FEEI+RD+NPNWM
Sbjct: 913 TEKDVRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWM 972
Query: 1171 TSIEILDDELFLGAENSYNLFICQKDSAATSDEDRTHLQEVGTVHL 1216
+++EILDD+ FLGAEN++NLF+CQKDSAAT+DE+R HLQEVG HL
Sbjct: 973 SAVEILDDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFHL 1018
Score = 86.7 bits (213), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 42/81 (51%), Positives = 59/81 (72%)
Query: 625 NFTSSTDLNLVVAKNNRIEIHTVTPEGLRPVKEIFLYGKIAVMKFFRGPTDKKDLLFIIT 684
+FTS+ DLNL++AKN R+EI+ VT EGLRPVKE+ +YGKIAVM+ FR + KDLLFI+T
Sbjct: 40 HFTSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGKIAVMELFRPKGESKDLLFILT 99
Query: 685 QRTDLNLVVAKNNRIEIHTVT 705
+ + ++ K + I +T
Sbjct: 100 AKYNACILEYKQSGESIDIIT 120
Score = 84.3 bits (207), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 44/68 (64%), Positives = 48/68 (70%)
Query: 1 EGSLRIIRNGIGIEEHACIDLPGIKGIWALSIGSPKNLDNTLVLSFVGHTRVLTLSGAEW 60
EGSLRIIRNGIGI EHA IDLPGIKG+W L + +TLVLSFVG TRVL L+G E
Sbjct: 402 EGSLRIIRNGIGIHEHASIDLPGIKGLWPLRSDPNRETYDTLVLSFVGQTRVLMLNGEEV 461
Query: 61 GFHLLRGF 68
L GF
Sbjct: 462 EETELMGF 469
>pdb|3I7H|A Chain A, Crystal Structure Of Ddb1 In Complex With The H-Box Motif
Of Hbx
pdb|3I7K|A Chain A, Crystal Structure Of Ddb1 In Complex With The H-Box Motif
Of Whx
pdb|3I7L|A Chain A, Crystal Structure Of Ddb1 In Complex With The H-Box Motif
Of Ddb2
pdb|3I7N|A Chain A, Crystal Structure Of Ddb1 In Complex With The H-Box Motif
Of Wdtc1
pdb|3I7O|A Chain A, Crystal Structure Of Ddb1 In Complex With The H-Box Motif
Of Iqwd1
pdb|3I7P|A Chain A, Crystal Structure Of Ddb1 In Complex With The H-Box Motif
Of Wdr40a
pdb|3I89|A Chain A, Crystal Structure Of Ddb1 In Complex With The H-Box Motif
Of Wdr22
pdb|3I8C|A Chain A, Crystal Structure Of Ddb1 In Complex With The H-Box Motif
Of Wdr21a
pdb|3I8E|A Chain A, Crystal Structure Of Ddb1 In Complex With The H-Box Motif
Of Wdr42a
pdb|3I8E|B Chain B, Crystal Structure Of Ddb1 In Complex With The H-Box Motif
Of Wdr42a
Length = 1143
Score = 681 bits (1756), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 343/544 (63%), Positives = 408/544 (75%), Gaps = 14/544 (2%)
Query: 81 RYLLGDLAGRLFXXXXXXXXXXDGTFSVKEPKVELLGEISIPECLTYLDNGVVFVGSRLG 140
RYLLGD+ GRLF DGT ++K+ +VELLGE SI ECLTYLDNGVVFVGSRLG
Sbjct: 273 RYLLGDMEGRLFMLLLEKEEQMDGTVTLKDLRVELLGETSIAECLTYLDNGVVFVGSRLG 332
Query: 141 DSQLVKLNRSPDENGTYVSVMESFTNLAPIIDMVVVDLERQGQGQLVTCSGGFKEGSLRI 200
DSQLVKLN +E G+YV ME+FTNL PI+DM VVDLERQGQGQLVTCSG FKEGSLRI
Sbjct: 333 DSQLVKLNVDSNEQGSYVVAMETFTNLGPIVDMCVVDLERQGQGQLVTCSGAFKEGSLRI 392
Query: 201 IRNGIGIEEHACIDLPGIKGIWALSIGSPKNLDNTLVLSFVGHTRVLTLSGAEVEETEMG 260
IRNGIGI EHA IDLPGIKG+W L + +TLVLSFVG TRVL L+G EVEETE+
Sbjct: 393 IRNGIGIHEHASIDLPGIKGLWPLRSDPNRETYDTLVLSFVGQTRVLMLNGEEVEETELM 452
Query: 261 GFTSDQQTFYCGNVDPRTVLQVTPSAAILISTESKARVSSWEPPNGKSISVVSCNKNQVL 320
GF DQQTF+CGNV + ++Q+T ++ L+S E KA VS W+ P K+ISV SCN +QV+
Sbjct: 453 GFVDDQQTFFCGNVAHQQLIQITSASVRLVSQEPKALVSEWKEPQAKNISVASCNSSQVV 512
Query: 321 CATGCDVYYLEVHGSEIKQLAHRALEYEVACLDISPLSNEETSSEPAKAQLAAVGLWTDI 380
A G +YYL++H E++Q++H +E+EVACLDI+PL + S L A+GLWTDI
Sbjct: 513 VAVGRALYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGLSP-----LCAIGLWTDI 567
Query: 381 SARLLSLPSLEEVCKEPLGGEIIPRSILMTCFEGHCYLLVALGDGSMFYFSLDPASGRLT 440
SAR+L LPS E + KE LGGEIIPRSILMT FE YLL ALGDG++FYF L+ +G L+
Sbjct: 568 SARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLLS 627
Query: 441 DKKKVTLGTQPTVLKTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLRQVNHMCSLNA 500
D+KKVTLGTQPTVL+TFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNL++VN+MC LN+
Sbjct: 628 DRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLKEVNYMCPLNS 687
Query: 501 ESYPDSLALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQE 560
+ YPDSLALA +ST T GTIDEIQKLHIRTVPL E+PR+I YQE SQ FGV+++RI++Q+
Sbjct: 688 DGYPDSLALANNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQD 747
Query: 561 -ADGSTPVRPXXXXXXXXXXXXXXXXXXYIKPGSTKQSTANQPADFNMEVEVHNLLIIDQ 619
+ G+T +RP STA F EVEVHNLLIIDQ
Sbjct: 748 TSGGTTALRPSASTQALSSSVSSSK--------LFSSSTAPHETSFGEEVEVHNLLIIDQ 799
Query: 620 NTFE 623
+TFE
Sbjct: 800 HTFE 803
Score = 386 bits (991), Expect = e-107, Method: Compositional matrix adjust.
Identities = 181/284 (63%), Positives = 227/284 (79%)
Query: 684 TQRTDLNLVVAKNNRIEIHTVTPEGLRPVKEIFLYGKIAVMKFFRGPTDKKDLLFIITQR 743
T DLNL++AKN R+EI+ VT EGLRPVKE+ +YGKIAVM+ FR + KDLLFI+T +
Sbjct: 27 TSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGKIAVMELFRPKGESKDLLFILTAK 86
Query: 744 YNAMILECRGDIDNLEILTKAHGNVSDRIGKPSENGIIAIIDPEARVIGLRLYNGLFKII 803
YNA ILE + ++++I+T+AHGNV DRIG+PSE GII IIDPE R+IGLRLY+GLFK+I
Sbjct: 87 YNACILEYKQSGESIDIITRAHGNVQDRIGRPSETGIIGIIDPECRMIGLRLYDGLFKVI 146
Query: 804 PLEKDNFELKASSIRMEELEIQDVQFLHGCQNPTIICIHQDVNGRHVKTHEISLKEKEFT 863
PL++DN ELKA +IR+EEL + DV+FL+GCQ PTI ++QD GRHVKT+E+SL+EKEF
Sbjct: 147 PLDRDNKELKAFNIRLEELHVIDVKFLYGCQAPTICFVYQDPQGRHVKTYEVSLREKEFN 206
Query: 864 KTPWKQDNIEMEASLVIPVPEPLGGAIIIGQESILYHSGKSYVAVAPQIIKSSTIVCYAK 923
K PWKQ+N+E EAS+VI VPEP GGAIIIGQESI YH+G Y+A+AP IIK STIVC+ +
Sbjct: 207 KGPWKQENVEAEASMVIAVPEPFGGAIIIGQESITYHNGDKYLAIAPPIIKQSTIVCHNR 266
Query: 924 VDANGERYLLGDLAGRLFXXXXXXXXXXDGTFSVKEPKVELLGE 967
VD NG RYLLGD+ GRLF DGT ++K+ +VELLGE
Sbjct: 267 VDPNGSRYLLGDMEGRLFMLLLEKEEQMDGTVTLKDLRVELLGE 310
Score = 366 bits (939), Expect = e-101, Method: Compositional matrix adjust.
Identities = 165/226 (73%), Positives = 197/226 (87%)
Query: 991 TANQPADFNMEVEVHNLLIIDQNTFEILHAHQLFPGEYALSLISSKFGEDPNTYFVLGTA 1050
TA F EVEVHNLLIIDQ+TFE+LHAHQ EYALSL+S K G+DPNTYF++GTA
Sbjct: 778 TAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTA 837
Query: 1051 VVHPEENEPKQGRIIIFHYDDGKLQQIAEKEIKGACYSMCEFNGKLLASINSTVRLFEWT 1110
+V+PEE EPKQGRI++F Y DGKLQ +AEKE+KGA YSM EFNGKLLASINSTVRL+EWT
Sbjct: 838 MVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWT 897
Query: 1111 NEKELRLECSHFNNIIALFLKVKGDFILVGDLMRSLTLLQYKTMEGSFEEISRDYNPNWM 1170
EK++R EC+H+NNI+AL+LK KGDFILVGDLMRS+ LL YK MEG+FEEI+RD+NPNWM
Sbjct: 898 TEKDVRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWM 957
Query: 1171 TSIEILDDELFLGAENSYNLFICQKDSAATSDEDRTHLQEVGTVHL 1216
+++EILDD+ FLGAEN++NLF+CQKDSAAT+DE+R HLQEVG HL
Sbjct: 958 SAVEILDDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFHL 1003
Score = 86.7 bits (213), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 42/81 (51%), Positives = 59/81 (72%)
Query: 625 NFTSSTDLNLVVAKNNRIEIHTVTPEGLRPVKEIFLYGKIAVMKFFRGPTDKKDLLFIIT 684
+FTS+ DLNL++AKN R+EI+ VT EGLRPVKE+ +YGKIAVM+ FR + KDLLFI+T
Sbjct: 25 HFTSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGKIAVMELFRPKGESKDLLFILT 84
Query: 685 QRTDLNLVVAKNNRIEIHTVT 705
+ + ++ K + I +T
Sbjct: 85 AKYNACILEYKQSGESIDIIT 105
Score = 84.3 bits (207), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 44/68 (64%), Positives = 48/68 (70%)
Query: 1 EGSLRIIRNGIGIEEHACIDLPGIKGIWALSIGSPKNLDNTLVLSFVGHTRVLTLSGAEW 60
EGSLRIIRNGIGI EHA IDLPGIKG+W L + +TLVLSFVG TRVL L+G E
Sbjct: 387 EGSLRIIRNGIGIHEHASIDLPGIKGLWPLRSDPNRETYDTLVLSFVGQTRVLMLNGEEV 446
Query: 61 GFHLLRGF 68
L GF
Sbjct: 447 EETELMGF 454
>pdb|2B5N|A Chain A, Crystal Structure Of The Ddb1 Bpb Domain
pdb|2B5N|B Chain B, Crystal Structure Of The Ddb1 Bpb Domain
pdb|2B5N|C Chain C, Crystal Structure Of The Ddb1 Bpb Domain
pdb|2B5N|D Chain D, Crystal Structure Of The Ddb1 Bpb Domain
Length = 323
Score = 427 bits (1097), Expect = e-119, Method: Compositional matrix adjust.
Identities = 209/325 (64%), Positives = 254/325 (78%), Gaps = 5/325 (1%)
Query: 201 IRNGIGIEEHACIDLPGIKGIWALSIGSPKNLDNTLVLSFVGHTRVLTLSGAEVEETEMG 260
+RNGIGI EHA IDLPGIKG+W L + +TLVLSFVG TRVL L+G EVEETE+
Sbjct: 4 MRNGIGIHEHASIDLPGIKGLWPLRSDPNRETYDTLVLSFVGQTRVLMLNGEEVEETELM 63
Query: 261 GFTSDQQTFYCGNVDPRTVLQVTPSAAILISTESKARVSSWEPPNGKSISVVSCNKNQVL 320
GF DQQTF+CGNV + ++Q+T ++ L+S E KA VS W+ P K+ISV SCN +QV+
Sbjct: 64 GFVDDQQTFFCGNVAHQQLIQITSASVRLVSQEPKALVSEWKEPQAKNISVASCNSSQVV 123
Query: 321 CATGCDVYYLEVHGSEIKQLAHRALEYEVACLDISPLSNEETSSEPAKAQLAAVGLWTDI 380
A G +YYL++H E++Q++H +E+EVACLDI+PL + S L A+GLWTDI
Sbjct: 124 VAVGRALYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGLSP-----LCAIGLWTDI 178
Query: 381 SARLLSLPSLEEVCKEPLGGEIIPRSILMTCFEGHCYLLVALGDGSMFYFSLDPASGRLT 440
SAR+L LPS E + KE LGGEIIPRSILMT FE YLL ALGDG++FYF L+ +G L+
Sbjct: 179 SARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLLS 238
Query: 441 DKKKVTLGTQPTVLKTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLRQVNHMCSLNA 500
D+KKVTLGTQPTVL+TFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNL++VN+MC LN+
Sbjct: 239 DRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLKEVNYMCPLNS 298
Query: 501 ESYPDSLALATDSTFTFGTIDEIQK 525
+ YPDSLALA +ST T GTIDEIQK
Sbjct: 299 DGYPDSLALANNSTLTIGTIDEIQK 323
Score = 71.2 bits (173), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 37/62 (59%), Positives = 42/62 (67%)
Query: 7 IRNGIGIEEHACIDLPGIKGIWALSIGSPKNLDNTLVLSFVGHTRVLTLSGAEWGFHLLR 66
+RNGIGI EHA IDLPGIKG+W L + +TLVLSFVG TRVL L+G E L
Sbjct: 4 MRNGIGIHEHASIDLPGIKGLWPLRSDPNRETYDTLVLSFVGQTRVLMLNGEEVEETELM 63
Query: 67 GF 68
GF
Sbjct: 64 GF 65
>pdb|1VCL|A Chain A, Crystal Structure Of Hemolytic Lectin Cel-iii
pdb|1VCL|B Chain B, Crystal Structure Of Hemolytic Lectin Cel-iii
pdb|2Z48|A Chain A, Crystal Structure Of Hemolytic Lectin Cel-Iii Complexed
With Galnac
pdb|2Z48|B Chain B, Crystal Structure Of Hemolytic Lectin Cel-Iii Complexed
With Galnac
pdb|2Z49|A Chain A, Crystal Structure Of Hemolytic Lectin Cel-Iii Complexed
With Methyl-Alpha-D-Galactopylanoside
pdb|2Z49|B Chain B, Crystal Structure Of Hemolytic Lectin Cel-Iii Complexed
With Methyl-Alpha-D-Galactopylanoside
Length = 432
Score = 30.4 bits (67), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 52/118 (44%), Gaps = 7/118 (5%)
Query: 117 GEISIPECLTYLDNGVVFVGSRLGDSQLVKLNRSPDENGTYVSVMESFTNLAPIIDMVVV 176
G I+ +C D ++ G ++ +PD +G +VM S L P ++
Sbjct: 31 GNIATYDCDGLSDQQIIICGDGTIRNEARNYCFTPDGSGN-ANVMSSPCTLYP--EIPSS 87
Query: 177 DLERQGQGQLVTCSGGFKEGSLRIIRNGIGIEEHACIDLPGIKGIWALSIGSPKNLDN 234
RQG+ + T +GG ++ + II + C+D+ G G + + +NLD+
Sbjct: 88 QRWRQGRRKTFTDNGGIEQVATEIIN----LASGKCLDIEGSDGTGDIGVYDCQNLDD 141
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,722,054
Number of Sequences: 62578
Number of extensions: 1497326
Number of successful extensions: 3418
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 3329
Number of HSP's gapped (non-prelim): 68
length of query: 1225
length of database: 14,973,337
effective HSP length: 110
effective length of query: 1115
effective length of database: 8,089,757
effective search space: 9020079055
effective search space used: 9020079055
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)