BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7977
(1225 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q805F9|DDB1_CHICK DNA damage-binding protein 1 OS=Gallus gallus GN=DDB1 PE=2 SV=1
Length = 1140
Score = 731 bits (1888), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 366/544 (67%), Positives = 430/544 (79%), Gaps = 14/544 (2%)
Query: 81 RYLLGDLAGRLFMLLLEKEEKMDGTFSVKEPKVELLGEISIPECLTYLDNGVVFVGSRLG 140
RYLLGD+ GRLFMLLLEKEE+MDGT ++K+ +VELLGE SI ECLTYLDNGVVFVGSRLG
Sbjct: 270 RYLLGDMEGRLFMLLLEKEEQMDGTVTLKDLRVELLGETSIAECLTYLDNGVVFVGSRLG 329
Query: 141 DSQLVKLNRSPDENGTYVSVMESFTNLAPIIDMVVVDLERQGQGQLVTCSGGFKEGSLRI 200
DSQLVKLN +E G+YV ME+FTNL PI+DM VVDLERQGQGQLVTCSG FKEGSLRI
Sbjct: 330 DSQLVKLNVDSNEQGSYVVAMETFTNLGPIVDMCVVDLERQGQGQLVTCSGAFKEGSLRI 389
Query: 201 IRNGIGIEEHACIDLPGIKGIWALSIGSPKNLDNTLVLSFVGHTRVLTLSGAEVEETEMG 260
IRNGIGI EHA IDLPGIKG+W L S + +DN LVLSFVG TRVL L+G EVEETE+
Sbjct: 390 IRNGIGIHEHASIDLPGIKGLWPLRSDSHREMDNMLVLSFVGQTRVLMLNGEEVEETELT 449
Query: 261 GFTSDQQTFYCGNVDPRTVLQVTPSAAILISTESKARVSSWEPPNGKSISVVSCNKNQVL 320
GF DQQTF+CGNV + ++Q+T ++ L+S E KA VS W+ PNGK+ISV SCN NQV+
Sbjct: 450 GFVDDQQTFFCGNVAHQQLIQITSASVRLVSQEPKALVSEWKEPNGKNISVASCNSNQVV 509
Query: 321 CATGCDVYYLEVHGSEIKQLAHRALEYEVACLDISPLSNEETSSEPAKAQLAAVGLWTDI 380
A G +YYLE+ E++Q+ +E+EVACLDI+PL + S L A+GLWTDI
Sbjct: 510 VAVGRALYYLEIRPQELRQINCTEMEHEVACLDITPLGDTNGMSP-----LCAIGLWTDI 564
Query: 381 SARLLSLPSLEEVCKEPLGGEIIPRSILMTCFEGHCYLLVALGDGSMFYFSLDPASGRLT 440
SAR+L LPS E + KE LGGEIIPRSILMT FE YLL ALGDG++FYF L +G L+
Sbjct: 565 SARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLSLETGLLS 624
Query: 441 DKKKVTLGTQPTVLKTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLRQVNHMCSLNA 500
D+KKVTLGTQPTVL+TFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNL++VN+MC LN+
Sbjct: 625 DRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLKEVNYMCPLNS 684
Query: 501 ESYPDSLALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQE 560
+ YPDSLALA +ST T GTIDEIQKLHIRTVPL E+PR+I YQE SQ FGV+++RI++Q+
Sbjct: 685 DGYPDSLALANNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQD 744
Query: 561 AD-GSTPVRPSASTQAQNTTSSTISSLSYIKPGSTKQSTANQPADFNMEVEVHNLLIIDQ 619
A G+T +RPSASTQA +++ ST S STA F EVEVHNLLIIDQ
Sbjct: 745 ASGGTTALRPSASTQALSSSVSTSKLFS--------SSTAPHETSFGEEVEVHNLLIIDQ 796
Query: 620 NTFE 623
+TFE
Sbjct: 797 HTFE 800
Score = 410 bits (1053), Expect = e-113, Method: Compositional matrix adjust.
Identities = 190/285 (66%), Positives = 238/285 (83%)
Query: 683 ITQRTDLNLVVAKNNRIEIHTVTPEGLRPVKEIFLYGKIAVMKFFRGPTDKKDLLFIITQ 742
T DLNL++AKN R+EI+ VT EGLRPVKE+ +YGK AVM+ FR + KDLLFI+T
Sbjct: 23 FTSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGKTAVMELFRPKGESKDLLFILTA 82
Query: 743 RYNAMILECRGDIDNLEILTKAHGNVSDRIGKPSENGIIAIIDPEARVIGLRLYNGLFKI 802
+YNA ILE + + DN++I+T+AHGNV DRIG+PSE GII IIDPE R+IGLRLY+GLFK+
Sbjct: 83 KYNACILEYKQNGDNIDIITRAHGNVQDRIGRPSETGIIGIIDPECRMIGLRLYDGLFKV 142
Query: 803 IPLEKDNFELKASSIRMEELEIQDVQFLHGCQNPTIICIHQDVNGRHVKTHEISLKEKEF 862
IPL+++N ELKA +IR+EEL++ DV+FL+GCQ PTI ++QD GRHVKT+E+SL+EKEF
Sbjct: 143 IPLDRENKELKAFNIRLEELQVIDVKFLYGCQAPTICFVYQDPQGRHVKTYEVSLREKEF 202
Query: 863 TKTPWKQDNIEMEASLVIPVPEPLGGAIIIGQESILYHSGKSYVAVAPQIIKSSTIVCYA 922
K PWKQ+N+E EAS+VI VPEP GGAIIIGQESI YH+G Y+A+AP IIK STIVC+
Sbjct: 203 NKGPWKQENVEAEASMVIAVPEPFGGAIIIGQESITYHNGDKYLAIAPPIIKQSTIVCHN 262
Query: 923 KVDANGERYLLGDLAGRLFMLLLEKEEKMDGTFSVKEPKVELLGE 967
+VD NG RYLLGD+ GRLFMLLLEKEE+MDGT ++K+ +VELLGE
Sbjct: 263 RVDPNGSRYLLGDMEGRLFMLLLEKEEQMDGTVTLKDLRVELLGE 307
Score = 373 bits (957), Expect = e-102, Method: Compositional matrix adjust.
Identities = 169/227 (74%), Positives = 199/227 (87%)
Query: 990 STANQPADFNMEVEVHNLLIIDQNTFEILHAHQLFPGEYALSLISSKFGEDPNTYFVLGT 1049
STA F EVEVHNLLIIDQ+TFE+LHAHQ EYALSL+S K G+DPNTYF++GT
Sbjct: 774 STAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGT 833
Query: 1050 AVVHPEENEPKQGRIIIFHYDDGKLQQIAEKEIKGACYSMCEFNGKLLASINSTVRLFEW 1109
A+V+PEE EPKQGRI++FHY DGKLQ +AEKE+KGA YSM EFNGKLLASINSTVRL+EW
Sbjct: 834 AMVYPEEAEPKQGRIVVFHYSDGKLQSLAEKEVKGAVYSMVEFNGKLLASINSTVRLYEW 893
Query: 1110 TNEKELRLECSHFNNIIALFLKVKGDFILVGDLMRSLTLLQYKTMEGSFEEISRDYNPNW 1169
T EKELR EC+H+NNI+AL+LK KGDFILVGDLMRS+ LL YK MEG+FEEI+RD+NPNW
Sbjct: 894 TAEKELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNW 953
Query: 1170 MTSIEILDDELFLGAENSYNLFICQKDSAATSDEDRTHLQEVGTVHL 1216
M+++EILDD+ FLGAEN++NLF+CQKDSAAT+DE+R HLQEVG HL
Sbjct: 954 MSAVEILDDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLSHL 1000
Score = 91.3 bits (225), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 46/68 (67%), Positives = 50/68 (73%)
Query: 1 EGSLRIIRNGIGIEEHACIDLPGIKGIWALSIGSPKNLDNTLVLSFVGHTRVLTLSGAEW 60
EGSLRIIRNGIGI EHA IDLPGIKG+W L S + +DN LVLSFVG TRVL L+G E
Sbjct: 384 EGSLRIIRNGIGIHEHASIDLPGIKGLWPLRSDSHREMDNMLVLSFVGQTRVLMLNGEEV 443
Query: 61 GFHLLRGF 68
L GF
Sbjct: 444 EETELTGF 451
Score = 87.4 bits (215), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 42/81 (51%), Positives = 58/81 (71%)
Query: 625 NFTSSTDLNLVVAKNNRIEIHTVTPEGLRPVKEIFLYGKIAVMKFFRGPTDKKDLLFIIT 684
+FTS+ DLNL++AKN R+EI+ VT EGLRPVKE+ +YGK AVM+ FR + KDLLFI+T
Sbjct: 22 HFTSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGKTAVMELFRPKGESKDLLFILT 81
Query: 685 QRTDLNLVVAKNNRIEIHTVT 705
+ + ++ K N I +T
Sbjct: 82 AKYNACILEYKQNGDNIDIIT 102
>sp|Q6P6Z0|DDB1_XENLA DNA damage-binding protein 1 OS=Xenopus laevis GN=ddb1 PE=2 SV=1
Length = 1140
Score = 727 bits (1876), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 359/544 (65%), Positives = 432/544 (79%), Gaps = 14/544 (2%)
Query: 81 RYLLGDLAGRLFMLLLEKEEKMDGTFSVKEPKVELLGEISIPECLTYLDNGVVFVGSRLG 140
RYLLGD+ GRLFMLLLEKEE+MDG+ ++K+ +VELLGE SI ECLTYLDNGVVFVGSRLG
Sbjct: 270 RYLLGDMEGRLFMLLLEKEEQMDGSVTLKDLRVELLGETSIAECLTYLDNGVVFVGSRLG 329
Query: 141 DSQLVKLNRSPDENGTYVSVMESFTNLAPIIDMVVVDLERQGQGQLVTCSGGFKEGSLRI 200
DSQLVKL +E G+YV VME+FTNL PI+DM VVDLERQGQGQLVTCSG FKEGSLRI
Sbjct: 330 DSQLVKLTTESNEQGSYVVVMETFTNLGPIVDMCVVDLERQGQGQLVTCSGAFKEGSLRI 389
Query: 201 IRNGIGIEEHACIDLPGIKGIWALSIGSPKNLDNTLVLSFVGHTRVLTLSGAEVEETEMG 260
IRNGIGI EHA IDLPGIKG+W L + + ++ D+TLVLSFVG TRVLTL+G EVEET++
Sbjct: 390 IRNGIGIHEHASIDLPGIKGLWPLRVAADRDTDDTLVLSFVGQTRVLTLTGEEVEETDLA 449
Query: 261 GFTSDQQTFYCGNVDPRTVLQVTPSAAILISTESKARVSSWEPPNGKSISVVSCNKNQVL 320
GF DQQTF+CGNV + ++Q+T ++ L+S + VS W+ P G+ +SV SCN QVL
Sbjct: 450 GFVDDQQTFFCGNVAHQQLIQITSASVRLVSQNPQNLVSEWKEPQGRKVSVCSCNSRQVL 509
Query: 321 CATGCDVYYLEVHGSEIKQLAHRALEYEVACLDISPLSNEETSSEPAKAQLAAVGLWTDI 380
A G +YYLE+H E++Q + +E+EVACLD++PL +T S L A+GLWTDI
Sbjct: 510 LAVGRVLYYLEIHPGELRQTSCTEMEHEVACLDVTPLGGNDTLS-----SLCAIGLWTDI 564
Query: 381 SARLLSLPSLEEVCKEPLGGEIIPRSILMTCFEGHCYLLVALGDGSMFYFSLDPASGRLT 440
SAR+LSLP + + KE LGGEIIPRSILMT FE YLL ALGDG++FYFSL+ +G L+
Sbjct: 565 SARILSLPGFQLLHKEMLGGEIIPRSILMTSFESSHYLLCALGDGALFYFSLNTDTGLLS 624
Query: 441 DKKKVTLGTQPTVLKTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLRQVNHMCSLNA 500
D+KKVTLGTQPTVL+TFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNL++VN+MC LN+
Sbjct: 625 DRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLKEVNYMCPLNS 684
Query: 501 ESYPDSLALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQE 560
E YPDSLALA +ST T GTIDEIQKLHIRTVPL E+PR+I YQE SQ FGV+++RI++Q+
Sbjct: 685 EGYPDSLALANNSTLTIGTIDEIQKLHIRTVPLFESPRKICYQEVSQCFGVLSSRIEVQD 744
Query: 561 AD-GSTPVRPSASTQAQNTTSSTISSLSYIKPGSTKQSTANQPADFNMEVEVHNLLIIDQ 619
A GS+P+RPSASTQA +++ S S ST+ F EVEVHNLLIIDQ
Sbjct: 745 ASGGSSPLRPSASTQALSSSVSCSKLFS--------GSTSPHETSFGEEVEVHNLLIIDQ 796
Query: 620 NTFE 623
+TFE
Sbjct: 797 HTFE 800
Score = 411 bits (1056), Expect = e-113, Method: Compositional matrix adjust.
Identities = 190/285 (66%), Positives = 238/285 (83%)
Query: 683 ITQRTDLNLVVAKNNRIEIHTVTPEGLRPVKEIFLYGKIAVMKFFRGPTDKKDLLFIITQ 742
T DLNL++AKN R+EI+ VTPEGLRPVKE+ +YGKIAVM+ FR + KDLLFI+T
Sbjct: 23 FTSEDDLNLLIAKNTRLEIYVVTPEGLRPVKEVGMYGKIAVMELFRPKGESKDLLFILTA 82
Query: 743 RYNAMILECRGDIDNLEILTKAHGNVSDRIGKPSENGIIAIIDPEARVIGLRLYNGLFKI 802
+YNA ILE + D+++I+T+AHGNV DRIG+PSE GII IIDP+ R+IGLRLY+GLFK+
Sbjct: 83 KYNACILEYKQSGDSIDIITRAHGNVQDRIGRPSETGIIGIIDPDCRMIGLRLYDGLFKV 142
Query: 803 IPLEKDNFELKASSIRMEELEIQDVQFLHGCQNPTIICIHQDVNGRHVKTHEISLKEKEF 862
IPLE+DN ELKA +IR+EEL + DV+FL+ CQ PTI ++QD GRHVKT+E+SL+EKEF
Sbjct: 143 IPLERDNKELKAFNIRLEELHVIDVKFLYSCQAPTICFVYQDPQGRHVKTYEVSLREKEF 202
Query: 863 TKTPWKQDNIEMEASLVIPVPEPLGGAIIIGQESILYHSGKSYVAVAPQIIKSSTIVCYA 922
+K PWKQ+N+E EAS+VI VPEP GGAIIIGQESI YH+G Y+A+AP IIK STIVC+
Sbjct: 203 SKGPWKQENVEAEASMVIAVPEPFGGAIIIGQESITYHNGDKYLAIAPPIIKQSTIVCHN 262
Query: 923 KVDANGERYLLGDLAGRLFMLLLEKEEKMDGTFSVKEPKVELLGE 967
+VD NG RYLLGD+ GRLFMLLLEKEE+MDG+ ++K+ +VELLGE
Sbjct: 263 RVDVNGSRYLLGDMEGRLFMLLLEKEEQMDGSVTLKDLRVELLGE 307
Score = 363 bits (932), Expect = 4e-99, Method: Compositional matrix adjust.
Identities = 164/227 (72%), Positives = 196/227 (86%)
Query: 990 STANQPADFNMEVEVHNLLIIDQNTFEILHAHQLFPGEYALSLISSKFGEDPNTYFVLGT 1049
ST+ F EVEVHNLLIIDQ+TFE+LH HQ EY LSL+S K G+DP TYFV+GT
Sbjct: 774 STSPHETSFGEEVEVHNLLIIDQHTFEVLHTHQFLQNEYTLSLVSCKLGKDPTTYFVVGT 833
Query: 1050 AVVHPEENEPKQGRIIIFHYDDGKLQQIAEKEIKGACYSMCEFNGKLLASINSTVRLFEW 1109
A+V+P+E EPKQGRI++F Y+DGKLQ +AEKE+KGA YSM EFNGKLLASINSTVRL+EW
Sbjct: 834 AMVYPDEAEPKQGRIVVFQYNDGKLQTVAEKEVKGAVYSMVEFNGKLLASINSTVRLYEW 893
Query: 1110 TNEKELRLECSHFNNIIALFLKVKGDFILVGDLMRSLTLLQYKTMEGSFEEISRDYNPNW 1169
T EKELR EC+H+NNI+AL+LK KGDFILVGDLMRS+ LL YK MEG+FEEI+RD+NPNW
Sbjct: 894 TAEKELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNW 953
Query: 1170 MTSIEILDDELFLGAENSYNLFICQKDSAATSDEDRTHLQEVGTVHL 1216
M+++EILDD+ FLGAEN++NLF+CQKDSAAT+DE+R HLQEVG HL
Sbjct: 954 MSAVEILDDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFHL 1000
Score = 94.7 bits (234), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 46/68 (67%), Positives = 53/68 (77%)
Query: 1 EGSLRIIRNGIGIEEHACIDLPGIKGIWALSIGSPKNLDNTLVLSFVGHTRVLTLSGAEW 60
EGSLRIIRNGIGI EHA IDLPGIKG+W L + + ++ D+TLVLSFVG TRVLTL+G E
Sbjct: 384 EGSLRIIRNGIGIHEHASIDLPGIKGLWPLRVAADRDTDDTLVLSFVGQTRVLTLTGEEV 443
Query: 61 GFHLLRGF 68
L GF
Sbjct: 444 EETDLAGF 451
Score = 89.7 bits (221), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 49/108 (45%), Positives = 65/108 (60%), Gaps = 13/108 (12%)
Query: 598 TANQPADFNMEVEVHNLLIIDQNTFERNFTSSTDLNLVVAKNNRIEIHTVTPEGLRPVKE 657
TA +P N V H FTS DLNL++AKN R+EI+ VTPEGLRPVKE
Sbjct: 8 TAQKPTAVNACVTGH-------------FTSEDDLNLLIAKNTRLEIYVVTPEGLRPVKE 54
Query: 658 IFLYGKIAVMKFFRGPTDKKDLLFIITQRTDLNLVVAKNNRIEIHTVT 705
+ +YGKIAVM+ FR + KDLLFI+T + + ++ K + I +T
Sbjct: 55 VGMYGKIAVMELFRPKGESKDLLFILTAKYNACILEYKQSGDSIDIIT 102
>sp|Q3U1J4|DDB1_MOUSE DNA damage-binding protein 1 OS=Mus musculus GN=Ddb1 PE=1 SV=2
Length = 1140
Score = 721 bits (1862), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 361/544 (66%), Positives = 431/544 (79%), Gaps = 14/544 (2%)
Query: 81 RYLLGDLAGRLFMLLLEKEEKMDGTFSVKEPKVELLGEISIPECLTYLDNGVVFVGSRLG 140
RYLLGD+ GRLFMLLLEKEE+MDGT ++K+ +VELLGE SI ECLTYLDNGVVFVGSRLG
Sbjct: 270 RYLLGDMEGRLFMLLLEKEEQMDGTVTLKDLRVELLGETSIAECLTYLDNGVVFVGSRLG 329
Query: 141 DSQLVKLNRSPDENGTYVSVMESFTNLAPIIDMVVVDLERQGQGQLVTCSGGFKEGSLRI 200
DSQLVKLN +E G+YV ME+FTNL PI+DM VVDLERQGQGQLVTCSG FKEGSLRI
Sbjct: 330 DSQLVKLNVDSNEQGSYVVAMETFTNLGPIVDMCVVDLERQGQGQLVTCSGAFKEGSLRI 389
Query: 201 IRNGIGIEEHACIDLPGIKGIWALSIGSPKNLDNTLVLSFVGHTRVLTLSGAEVEETEMG 260
IRNGIGI EHA IDLPGIKG+W L + D+TLVLSFVG TRVL L+G EVEETE+
Sbjct: 390 IRNGIGIHEHASIDLPGIKGLWPLRSDPGRETDDTLVLSFVGQTRVLMLNGEEVEETELM 449
Query: 261 GFTSDQQTFYCGNVDPRTVLQVTPSAAILISTESKARVSSWEPPNGKSISVVSCNKNQVL 320
GF DQQTF+CGNV + ++Q+T ++ L+S E KA VS W+ P GK+ISV SCN +QV+
Sbjct: 450 GFVDDQQTFFCGNVAHQQLIQITSASVRLVSQEPKALVSEWKEPQGKNISVASCNSSQVV 509
Query: 321 CATGCDVYYLEVHGSEIKQLAHRALEYEVACLDISPLSNEETSSEPAKAQLAAVGLWTDI 380
A G +YYL++H E++Q++H +E+EVACLDI+PL + S L A+GLWTDI
Sbjct: 510 VAVGRALYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGLSP-----LCAIGLWTDI 564
Query: 381 SARLLSLPSLEEVCKEPLGGEIIPRSILMTCFEGHCYLLVALGDGSMFYFSLDPASGRLT 440
SAR+L LPS E + KE LGGEIIPRSILMT FE YLL ALGDG++FYF L+ +G L+
Sbjct: 565 SARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLLS 624
Query: 441 DKKKVTLGTQPTVLKTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLRQVNHMCSLNA 500
D+KKVTLGTQPTVL+TFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNL++VN+MC LN+
Sbjct: 625 DRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLKEVNYMCPLNS 684
Query: 501 ESYPDSLALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQE 560
+ YPDSLALA +ST T GTIDEIQKLHIRTVPL E+PR+I YQE SQ FGV+++RI++Q+
Sbjct: 685 DGYPDSLALANNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQD 744
Query: 561 AD-GSTPVRPSASTQAQNTTSSTISSLSYIKPGSTKQSTANQPADFNMEVEVHNLLIIDQ 619
+ G+T +RPSASTQA +++ S+ STA F EVEVHNLLIIDQ
Sbjct: 745 SSGGTTALRPSASTQALSSSVSSSK--------LFSSSTAPHETSFGEEVEVHNLLIIDQ 796
Query: 620 NTFE 623
+TFE
Sbjct: 797 HTFE 800
Score = 407 bits (1047), Expect = e-112, Method: Compositional matrix adjust.
Identities = 190/285 (66%), Positives = 237/285 (83%)
Query: 683 ITQRTDLNLVVAKNNRIEIHTVTPEGLRPVKEIFLYGKIAVMKFFRGPTDKKDLLFIITQ 742
T DLNL++AKN R+EI+ VT EGLRPVKE+ +YGKIAVM+ FR + KDLLFI+T
Sbjct: 23 FTSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGKIAVMELFRPKGESKDLLFILTA 82
Query: 743 RYNAMILECRGDIDNLEILTKAHGNVSDRIGKPSENGIIAIIDPEARVIGLRLYNGLFKI 802
+YNA ILE + ++++I+T+AHGNV DRIG+PSE GII IIDPE R+IGLRLY+GLFK+
Sbjct: 83 KYNACILEYKQSGESIDIITRAHGNVQDRIGRPSETGIIGIIDPECRMIGLRLYDGLFKV 142
Query: 803 IPLEKDNFELKASSIRMEELEIQDVQFLHGCQNPTIICIHQDVNGRHVKTHEISLKEKEF 862
IPL++DN ELKA +IR+EEL + DV+FL+GCQ PTI ++QD GRHVKT+E+SL+EKEF
Sbjct: 143 IPLDRDNKELKAFNIRLEELHVIDVKFLYGCQAPTICFVYQDPQGRHVKTYEVSLREKEF 202
Query: 863 TKTPWKQDNIEMEASLVIPVPEPLGGAIIIGQESILYHSGKSYVAVAPQIIKSSTIVCYA 922
K PWKQ+N+E EAS+VI VPEP GGAIIIGQESI YH+G Y+A+AP IIK STIVC+
Sbjct: 203 NKGPWKQENVEAEASMVIAVPEPFGGAIIIGQESITYHNGDKYLAIAPPIIKQSTIVCHN 262
Query: 923 KVDANGERYLLGDLAGRLFMLLLEKEEKMDGTFSVKEPKVELLGE 967
+VD NG RYLLGD+ GRLFMLLLEKEE+MDGT ++K+ +VELLGE
Sbjct: 263 RVDPNGSRYLLGDMEGRLFMLLLEKEEQMDGTVTLKDLRVELLGE 307
Score = 369 bits (948), Expect = e-101, Method: Compositional matrix adjust.
Identities = 167/226 (73%), Positives = 197/226 (87%)
Query: 991 TANQPADFNMEVEVHNLLIIDQNTFEILHAHQLFPGEYALSLISSKFGEDPNTYFVLGTA 1050
TA F EVEVHNLLIIDQ+TFE+LHAHQ EYALSL+S K G+DPNTYF++GTA
Sbjct: 775 TAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTA 834
Query: 1051 VVHPEENEPKQGRIIIFHYDDGKLQQIAEKEIKGACYSMCEFNGKLLASINSTVRLFEWT 1110
+V+PEE EPKQGRI++F Y DGKLQ +AEKE+KGA YSM EFNGKLLASINSTVRL+EWT
Sbjct: 835 MVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWT 894
Query: 1111 NEKELRLECSHFNNIIALFLKVKGDFILVGDLMRSLTLLQYKTMEGSFEEISRDYNPNWM 1170
EKELR EC+H+NNI+AL+LK KGDFILVGDLMRS+ LL YK MEG+FEEI+RD+NPNWM
Sbjct: 895 TEKELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWM 954
Query: 1171 TSIEILDDELFLGAENSYNLFICQKDSAATSDEDRTHLQEVGTVHL 1216
+++EILDD+ FLGAEN++NLF+CQKDSAAT+DE+R HLQEVG HL
Sbjct: 955 SAVEILDDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFHL 1000
Score = 87.8 bits (216), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 45/68 (66%), Positives = 49/68 (72%)
Query: 1 EGSLRIIRNGIGIEEHACIDLPGIKGIWALSIGSPKNLDNTLVLSFVGHTRVLTLSGAEW 60
EGSLRIIRNGIGI EHA IDLPGIKG+W L + D+TLVLSFVG TRVL L+G E
Sbjct: 384 EGSLRIIRNGIGIHEHASIDLPGIKGLWPLRSDPGRETDDTLVLSFVGQTRVLMLNGEEV 443
Query: 61 GFHLLRGF 68
L GF
Sbjct: 444 EETELMGF 451
Score = 87.0 bits (214), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 42/81 (51%), Positives = 59/81 (72%)
Query: 625 NFTSSTDLNLVVAKNNRIEIHTVTPEGLRPVKEIFLYGKIAVMKFFRGPTDKKDLLFIIT 684
+FTS+ DLNL++AKN R+EI+ VT EGLRPVKE+ +YGKIAVM+ FR + KDLLFI+T
Sbjct: 22 HFTSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGKIAVMELFRPKGESKDLLFILT 81
Query: 685 QRTDLNLVVAKNNRIEIHTVT 705
+ + ++ K + I +T
Sbjct: 82 AKYNACILEYKQSGESIDIIT 102
>sp|A1A4K3|DDB1_BOVIN DNA damage-binding protein 1 OS=Bos taurus GN=DDB1 PE=2 SV=1
Length = 1140
Score = 719 bits (1856), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 360/544 (66%), Positives = 430/544 (79%), Gaps = 14/544 (2%)
Query: 81 RYLLGDLAGRLFMLLLEKEEKMDGTFSVKEPKVELLGEISIPECLTYLDNGVVFVGSRLG 140
RYLLGD+ GRLFMLLLEKEE+MDGT ++K+ +VELLGE SI ECLTYLDNGVVFVGSRLG
Sbjct: 270 RYLLGDMEGRLFMLLLEKEEQMDGTVTLKDLRVELLGETSIAECLTYLDNGVVFVGSRLG 329
Query: 141 DSQLVKLNRSPDENGTYVSVMESFTNLAPIIDMVVVDLERQGQGQLVTCSGGFKEGSLRI 200
DSQLVKLN +E G+YV ME+FTNL PI+DM VVDLERQGQGQLVTCSG FKEGSLRI
Sbjct: 330 DSQLVKLNVDSNEQGSYVVAMETFTNLGPIVDMCVVDLERQGQGQLVTCSGAFKEGSLRI 389
Query: 201 IRNGIGIEEHACIDLPGIKGIWALSIGSPKNLDNTLVLSFVGHTRVLTLSGAEVEETEMG 260
IRNGIGI EHA IDLPGIKG+W L + D+TLVLSFVG TRVL L+G EVEETE+
Sbjct: 390 IRNGIGIHEHASIDLPGIKGLWPLRSDPNRETDDTLVLSFVGQTRVLMLNGEEVEETELM 449
Query: 261 GFTSDQQTFYCGNVDPRTVLQVTPSAAILISTESKARVSSWEPPNGKSISVVSCNKNQVL 320
GF DQQTF+CGNV + ++Q+T ++ L+S E KA VS W+ P GK+ISV SCN +QV+
Sbjct: 450 GFVDDQQTFFCGNVAHQQLIQITSASVRLVSQEPKALVSEWKEPQGKNISVASCNSSQVV 509
Query: 321 CATGCDVYYLEVHGSEIKQLAHRALEYEVACLDISPLSNEETSSEPAKAQLAAVGLWTDI 380
A G +YYL++H E++Q++H +E+EVACLDI+PL + S L A+GLWTDI
Sbjct: 510 VAVGRALYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGMSP-----LCAIGLWTDI 564
Query: 381 SARLLSLPSLEEVCKEPLGGEIIPRSILMTCFEGHCYLLVALGDGSMFYFSLDPASGRLT 440
SAR+ LPS E + KE LGGEIIPRSILMT FE YLL ALGDG++FYF L+ +G L+
Sbjct: 565 SARIAKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLLS 624
Query: 441 DKKKVTLGTQPTVLKTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLRQVNHMCSLNA 500
D+KKVTLGTQPTVL+TFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNL++VN+MC LN+
Sbjct: 625 DRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLKEVNYMCPLNS 684
Query: 501 ESYPDSLALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQE 560
+ YPDSLALA +ST T GTIDEIQKLHIRTVPL E+PR+I YQE SQ FGV+++RI++Q+
Sbjct: 685 DGYPDSLALANNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQD 744
Query: 561 -ADGSTPVRPSASTQAQNTTSSTISSLSYIKPGSTKQSTANQPADFNMEVEVHNLLIIDQ 619
+ G+T +RPSASTQA +++ S+ STA F EVEVHNLLIIDQ
Sbjct: 745 TSGGTTALRPSASTQALSSSVSSSK--------LFSSSTAPHETSFGEEVEVHNLLIIDQ 796
Query: 620 NTFE 623
+TFE
Sbjct: 797 HTFE 800
Score = 407 bits (1047), Expect = e-112, Method: Compositional matrix adjust.
Identities = 190/285 (66%), Positives = 237/285 (83%)
Query: 683 ITQRTDLNLVVAKNNRIEIHTVTPEGLRPVKEIFLYGKIAVMKFFRGPTDKKDLLFIITQ 742
T DLNL++AKN R+EI+ VT EGLRPVKE+ +YGKIAVM+ FR + KDLLFI+T
Sbjct: 23 FTSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGKIAVMELFRPKGESKDLLFILTA 82
Query: 743 RYNAMILECRGDIDNLEILTKAHGNVSDRIGKPSENGIIAIIDPEARVIGLRLYNGLFKI 802
+YNA ILE + ++++I+T+AHGNV DRIG+PSE GII IIDPE R+IGLRLY+GLFK+
Sbjct: 83 KYNACILEYKQSGESIDIITRAHGNVQDRIGRPSETGIIGIIDPECRMIGLRLYDGLFKV 142
Query: 803 IPLEKDNFELKASSIRMEELEIQDVQFLHGCQNPTIICIHQDVNGRHVKTHEISLKEKEF 862
IPL++DN ELKA +IR+EEL + DV+FL+GCQ PTI ++QD GRHVKT+E+SL+EKEF
Sbjct: 143 IPLDRDNKELKAFNIRLEELHVIDVKFLYGCQAPTICFVYQDPQGRHVKTYEVSLREKEF 202
Query: 863 TKTPWKQDNIEMEASLVIPVPEPLGGAIIIGQESILYHSGKSYVAVAPQIIKSSTIVCYA 922
K PWKQ+N+E EAS+VI VPEP GGAIIIGQESI YH+G Y+A+AP IIK STIVC+
Sbjct: 203 NKGPWKQENVEAEASMVIAVPEPFGGAIIIGQESITYHNGDKYLAIAPPIIKQSTIVCHN 262
Query: 923 KVDANGERYLLGDLAGRLFMLLLEKEEKMDGTFSVKEPKVELLGE 967
+VD NG RYLLGD+ GRLFMLLLEKEE+MDGT ++K+ +VELLGE
Sbjct: 263 RVDPNGSRYLLGDMEGRLFMLLLEKEEQMDGTVTLKDLRVELLGE 307
Score = 369 bits (947), Expect = e-101, Method: Compositional matrix adjust.
Identities = 167/226 (73%), Positives = 197/226 (87%)
Query: 991 TANQPADFNMEVEVHNLLIIDQNTFEILHAHQLFPGEYALSLISSKFGEDPNTYFVLGTA 1050
TA F EVEVHNLLIIDQ+TFE+LHAHQ EYALSL+S K G+DPNTYF++GTA
Sbjct: 775 TAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTA 834
Query: 1051 VVHPEENEPKQGRIIIFHYDDGKLQQIAEKEIKGACYSMCEFNGKLLASINSTVRLFEWT 1110
+V+PEE EPKQGRI++F Y DGKLQ +AEKE+KGA YSM EFNGKLLASINSTVRL+EWT
Sbjct: 835 MVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWT 894
Query: 1111 NEKELRLECSHFNNIIALFLKVKGDFILVGDLMRSLTLLQYKTMEGSFEEISRDYNPNWM 1170
EKELR EC+H+NNI+AL+LK KGDFILVGDLMRS+ LL YK MEG+FEEI+RD+NPNWM
Sbjct: 895 TEKELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWM 954
Query: 1171 TSIEILDDELFLGAENSYNLFICQKDSAATSDEDRTHLQEVGTVHL 1216
+++EILDD+ FLGAEN++NLF+CQKDSAAT+DE+R HLQEVG HL
Sbjct: 955 SAVEILDDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFHL 1000
Score = 87.8 bits (216), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 45/68 (66%), Positives = 49/68 (72%)
Query: 1 EGSLRIIRNGIGIEEHACIDLPGIKGIWALSIGSPKNLDNTLVLSFVGHTRVLTLSGAEW 60
EGSLRIIRNGIGI EHA IDLPGIKG+W L + D+TLVLSFVG TRVL L+G E
Sbjct: 384 EGSLRIIRNGIGIHEHASIDLPGIKGLWPLRSDPNRETDDTLVLSFVGQTRVLMLNGEEV 443
Query: 61 GFHLLRGF 68
L GF
Sbjct: 444 EETELMGF 451
Score = 87.0 bits (214), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 42/81 (51%), Positives = 59/81 (72%)
Query: 625 NFTSSTDLNLVVAKNNRIEIHTVTPEGLRPVKEIFLYGKIAVMKFFRGPTDKKDLLFIIT 684
+FTS+ DLNL++AKN R+EI+ VT EGLRPVKE+ +YGKIAVM+ FR + KDLLFI+T
Sbjct: 22 HFTSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGKIAVMELFRPKGESKDLLFILT 81
Query: 685 QRTDLNLVVAKNNRIEIHTVT 705
+ + ++ K + I +T
Sbjct: 82 AKYNACILEYKQSGESIDIIT 102
>sp|Q5R649|DDB1_PONAB DNA damage-binding protein 1 OS=Pongo abelii GN=DDB1 PE=2 SV=1
Length = 1140
Score = 719 bits (1856), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 360/544 (66%), Positives = 430/544 (79%), Gaps = 14/544 (2%)
Query: 81 RYLLGDLAGRLFMLLLEKEEKMDGTFSVKEPKVELLGEISIPECLTYLDNGVVFVGSRLG 140
RYLLGD+ GRLFMLLLEKEE+MDGT ++K+ +VELLGE SI ECLTYLDNGVVFVGSRLG
Sbjct: 270 RYLLGDMEGRLFMLLLEKEEQMDGTVTLKDLRVELLGETSIAECLTYLDNGVVFVGSRLG 329
Query: 141 DSQLVKLNRSPDENGTYVSVMESFTNLAPIIDMVVVDLERQGQGQLVTCSGGFKEGSLRI 200
DSQLVKLN +E G+YV ME+FTNL PI+DM VVDLERQGQGQLVTCSG FKEGSLRI
Sbjct: 330 DSQLVKLNVDSNEQGSYVVAMETFTNLGPIVDMCVVDLERQGQGQLVTCSGAFKEGSLRI 389
Query: 201 IRNGIGIEEHACIDLPGIKGIWALSIGSPKNLDNTLVLSFVGHTRVLTLSGAEVEETEMG 260
IRNGIGI EHA IDLPGIKG+W L + D+TLVLSFVG TRVL L+G EVEETE+
Sbjct: 390 IRNGIGIHEHASIDLPGIKGLWPLRSDPNRETDDTLVLSFVGQTRVLMLNGEEVEETELM 449
Query: 261 GFTSDQQTFYCGNVDPRTVLQVTPSAAILISTESKARVSSWEPPNGKSISVVSCNKNQVL 320
GF DQQTF+CGNV + ++Q+T ++ L+S E KA VS W+ P K+ISV SCN +QV+
Sbjct: 450 GFVDDQQTFFCGNVAHQQLIQITSASVRLVSQEPKALVSEWKEPQAKNISVASCNSSQVV 509
Query: 321 CATGCDVYYLEVHGSEIKQLAHRALEYEVACLDISPLSNEETSSEPAKAQLAAVGLWTDI 380
A G +YYL++H E++Q++H +E+EVACLDI+PL + S L A+GLWTDI
Sbjct: 510 VAVGRALYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGLSP-----LCAIGLWTDI 564
Query: 381 SARLLSLPSLEEVCKEPLGGEIIPRSILMTCFEGHCYLLVALGDGSMFYFSLDPASGRLT 440
SAR+L LPS E + KE LGGEIIPRSILMT FE YLL ALGDG++FYF L+ +G L+
Sbjct: 565 SARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLLS 624
Query: 441 DKKKVTLGTQPTVLKTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLRQVNHMCSLNA 500
D+KKVTLGTQPTVL+TFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNL++VN+MC LN+
Sbjct: 625 DRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLKEVNYMCPLNS 684
Query: 501 ESYPDSLALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQE 560
+ YPDSLALA +ST T GTIDEIQKLHIRTVPL E+PR+I YQE SQ FGV+++RI++Q+
Sbjct: 685 DGYPDSLALANNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQD 744
Query: 561 -ADGSTPVRPSASTQAQNTTSSTISSLSYIKPGSTKQSTANQPADFNMEVEVHNLLIIDQ 619
+ G+T +RPSASTQA +++ S+ STA F EVEVHNLLIIDQ
Sbjct: 745 TSGGTTALRPSASTQALSSSVSSSK--------LFSSSTAPHETSFGEEVEVHNLLIIDQ 796
Query: 620 NTFE 623
+TFE
Sbjct: 797 HTFE 800
Score = 406 bits (1043), Expect = e-112, Method: Compositional matrix adjust.
Identities = 189/285 (66%), Positives = 236/285 (82%)
Query: 683 ITQRTDLNLVVAKNNRIEIHTVTPEGLRPVKEIFLYGKIAVMKFFRGPTDKKDLLFIITQ 742
T DLNL++AKN R+EI+ VT EGLRPVKE+ +YGKIAVM+ FR + KDLLFI+T
Sbjct: 23 FTSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGKIAVMELFRPKGESKDLLFILTA 82
Query: 743 RYNAMILECRGDIDNLEILTKAHGNVSDRIGKPSENGIIAIIDPEARVIGLRLYNGLFKI 802
+YN ILE + ++++I+T+AHGNV DRIG+PSE GII IIDPE R+IGLRLY+GLFK+
Sbjct: 83 KYNVCILEYKQSGESIDIITRAHGNVQDRIGRPSETGIIGIIDPECRMIGLRLYDGLFKV 142
Query: 803 IPLEKDNFELKASSIRMEELEIQDVQFLHGCQNPTIICIHQDVNGRHVKTHEISLKEKEF 862
IPL++DN ELKA +IR+EEL + DV+FL+GCQ PTI ++QD GRHVKT+E+SL+EKEF
Sbjct: 143 IPLDRDNKELKAFNIRLEELHVIDVKFLYGCQAPTICFVYQDPQGRHVKTYEVSLREKEF 202
Query: 863 TKTPWKQDNIEMEASLVIPVPEPLGGAIIIGQESILYHSGKSYVAVAPQIIKSSTIVCYA 922
K PWKQ+N+E EAS+VI VPEP GGAIIIGQESI YH+G Y+A+AP IIK STIVC+
Sbjct: 203 NKGPWKQENVEAEASMVIAVPEPFGGAIIIGQESITYHNGDKYLAIAPPIIKQSTIVCHN 262
Query: 923 KVDANGERYLLGDLAGRLFMLLLEKEEKMDGTFSVKEPKVELLGE 967
+VD NG RYLLGD+ GRLFMLLLEKEE+MDGT ++K+ +VELLGE
Sbjct: 263 RVDPNGSRYLLGDMEGRLFMLLLEKEEQMDGTVTLKDLRVELLGE 307
Score = 367 bits (943), Expect = e-100, Method: Compositional matrix adjust.
Identities = 166/226 (73%), Positives = 196/226 (86%)
Query: 991 TANQPADFNMEVEVHNLLIIDQNTFEILHAHQLFPGEYALSLISSKFGEDPNTYFVLGTA 1050
TA F EVEVHNLLIIDQ+TFE+LHAHQ EYALSL+S K G+DPNTYF++GTA
Sbjct: 775 TAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTA 834
Query: 1051 VVHPEENEPKQGRIIIFHYDDGKLQQIAEKEIKGACYSMCEFNGKLLASINSTVRLFEWT 1110
+V+PEE EPKQGRI++F Y DGKLQ +AEKE+KGA Y M EFNGKLLASINSTVRL+EWT
Sbjct: 835 MVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYPMVEFNGKLLASINSTVRLYEWT 894
Query: 1111 NEKELRLECSHFNNIIALFLKVKGDFILVGDLMRSLTLLQYKTMEGSFEEISRDYNPNWM 1170
EKELR EC+H+NNI+AL+LK KGDFILVGDLMRS+ LL YK MEG+FEEI+RD+NPNWM
Sbjct: 895 TEKELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWM 954
Query: 1171 TSIEILDDELFLGAENSYNLFICQKDSAATSDEDRTHLQEVGTVHL 1216
+++EILDD+ FLGAEN++NLF+CQKDSAAT+DE+R HLQEVG HL
Sbjct: 955 SAVEILDDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFHL 1000
Score = 87.8 bits (216), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 45/68 (66%), Positives = 49/68 (72%)
Query: 1 EGSLRIIRNGIGIEEHACIDLPGIKGIWALSIGSPKNLDNTLVLSFVGHTRVLTLSGAEW 60
EGSLRIIRNGIGI EHA IDLPGIKG+W L + D+TLVLSFVG TRVL L+G E
Sbjct: 384 EGSLRIIRNGIGIHEHASIDLPGIKGLWPLRSDPNRETDDTLVLSFVGQTRVLMLNGEEV 443
Query: 61 GFHLLRGF 68
L GF
Sbjct: 444 EETELMGF 451
Score = 87.8 bits (216), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 42/81 (51%), Positives = 60/81 (74%)
Query: 625 NFTSSTDLNLVVAKNNRIEIHTVTPEGLRPVKEIFLYGKIAVMKFFRGPTDKKDLLFIIT 684
+FTS+ DLNL++AKN R+EI+ VT EGLRPVKE+ +YGKIAVM+ FR + KDLLFI+T
Sbjct: 22 HFTSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGKIAVMELFRPKGESKDLLFILT 81
Query: 685 QRTDLNLVVAKNNRIEIHTVT 705
+ ++ ++ K + I +T
Sbjct: 82 AKYNVCILEYKQSGESIDIIT 102
>sp|Q16531|DDB1_HUMAN DNA damage-binding protein 1 OS=Homo sapiens GN=DDB1 PE=1 SV=1
Length = 1140
Score = 719 bits (1856), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 360/544 (66%), Positives = 430/544 (79%), Gaps = 14/544 (2%)
Query: 81 RYLLGDLAGRLFMLLLEKEEKMDGTFSVKEPKVELLGEISIPECLTYLDNGVVFVGSRLG 140
RYLLGD+ GRLFMLLLEKEE+MDGT ++K+ +VELLGE SI ECLTYLDNGVVFVGSRLG
Sbjct: 270 RYLLGDMEGRLFMLLLEKEEQMDGTVTLKDLRVELLGETSIAECLTYLDNGVVFVGSRLG 329
Query: 141 DSQLVKLNRSPDENGTYVSVMESFTNLAPIIDMVVVDLERQGQGQLVTCSGGFKEGSLRI 200
DSQLVKLN +E G+YV ME+FTNL PI+DM VVDLERQGQGQLVTCSG FKEGSLRI
Sbjct: 330 DSQLVKLNVDSNEQGSYVVAMETFTNLGPIVDMCVVDLERQGQGQLVTCSGAFKEGSLRI 389
Query: 201 IRNGIGIEEHACIDLPGIKGIWALSIGSPKNLDNTLVLSFVGHTRVLTLSGAEVEETEMG 260
IRNGIGI EHA IDLPGIKG+W L + D+TLVLSFVG TRVL L+G EVEETE+
Sbjct: 390 IRNGIGIHEHASIDLPGIKGLWPLRSDPNRETDDTLVLSFVGQTRVLMLNGEEVEETELM 449
Query: 261 GFTSDQQTFYCGNVDPRTVLQVTPSAAILISTESKARVSSWEPPNGKSISVVSCNKNQVL 320
GF DQQTF+CGNV + ++Q+T ++ L+S E KA VS W+ P K+ISV SCN +QV+
Sbjct: 450 GFVDDQQTFFCGNVAHQQLIQITSASVRLVSQEPKALVSEWKEPQAKNISVASCNSSQVV 509
Query: 321 CATGCDVYYLEVHGSEIKQLAHRALEYEVACLDISPLSNEETSSEPAKAQLAAVGLWTDI 380
A G +YYL++H E++Q++H +E+EVACLDI+PL + S L A+GLWTDI
Sbjct: 510 VAVGRALYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGLSP-----LCAIGLWTDI 564
Query: 381 SARLLSLPSLEEVCKEPLGGEIIPRSILMTCFEGHCYLLVALGDGSMFYFSLDPASGRLT 440
SAR+L LPS E + KE LGGEIIPRSILMT FE YLL ALGDG++FYF L+ +G L+
Sbjct: 565 SARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLLS 624
Query: 441 DKKKVTLGTQPTVLKTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLRQVNHMCSLNA 500
D+KKVTLGTQPTVL+TFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNL++VN+MC LN+
Sbjct: 625 DRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLKEVNYMCPLNS 684
Query: 501 ESYPDSLALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQE 560
+ YPDSLALA +ST T GTIDEIQKLHIRTVPL E+PR+I YQE SQ FGV+++RI++Q+
Sbjct: 685 DGYPDSLALANNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQD 744
Query: 561 -ADGSTPVRPSASTQAQNTTSSTISSLSYIKPGSTKQSTANQPADFNMEVEVHNLLIIDQ 619
+ G+T +RPSASTQA +++ S+ STA F EVEVHNLLIIDQ
Sbjct: 745 TSGGTTALRPSASTQALSSSVSSSK--------LFSSSTAPHETSFGEEVEVHNLLIIDQ 796
Query: 620 NTFE 623
+TFE
Sbjct: 797 HTFE 800
Score = 407 bits (1047), Expect = e-112, Method: Compositional matrix adjust.
Identities = 190/285 (66%), Positives = 237/285 (83%)
Query: 683 ITQRTDLNLVVAKNNRIEIHTVTPEGLRPVKEIFLYGKIAVMKFFRGPTDKKDLLFIITQ 742
T DLNL++AKN R+EI+ VT EGLRPVKE+ +YGKIAVM+ FR + KDLLFI+T
Sbjct: 23 FTSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGKIAVMELFRPKGESKDLLFILTA 82
Query: 743 RYNAMILECRGDIDNLEILTKAHGNVSDRIGKPSENGIIAIIDPEARVIGLRLYNGLFKI 802
+YNA ILE + ++++I+T+AHGNV DRIG+PSE GII IIDPE R+IGLRLY+GLFK+
Sbjct: 83 KYNACILEYKQSGESIDIITRAHGNVQDRIGRPSETGIIGIIDPECRMIGLRLYDGLFKV 142
Query: 803 IPLEKDNFELKASSIRMEELEIQDVQFLHGCQNPTIICIHQDVNGRHVKTHEISLKEKEF 862
IPL++DN ELKA +IR+EEL + DV+FL+GCQ PTI ++QD GRHVKT+E+SL+EKEF
Sbjct: 143 IPLDRDNKELKAFNIRLEELHVIDVKFLYGCQAPTICFVYQDPQGRHVKTYEVSLREKEF 202
Query: 863 TKTPWKQDNIEMEASLVIPVPEPLGGAIIIGQESILYHSGKSYVAVAPQIIKSSTIVCYA 922
K PWKQ+N+E EAS+VI VPEP GGAIIIGQESI YH+G Y+A+AP IIK STIVC+
Sbjct: 203 NKGPWKQENVEAEASMVIAVPEPFGGAIIIGQESITYHNGDKYLAIAPPIIKQSTIVCHN 262
Query: 923 KVDANGERYLLGDLAGRLFMLLLEKEEKMDGTFSVKEPKVELLGE 967
+VD NG RYLLGD+ GRLFMLLLEKEE+MDGT ++K+ +VELLGE
Sbjct: 263 RVDPNGSRYLLGDMEGRLFMLLLEKEEQMDGTVTLKDLRVELLGE 307
Score = 369 bits (947), Expect = e-101, Method: Compositional matrix adjust.
Identities = 167/226 (73%), Positives = 197/226 (87%)
Query: 991 TANQPADFNMEVEVHNLLIIDQNTFEILHAHQLFPGEYALSLISSKFGEDPNTYFVLGTA 1050
TA F EVEVHNLLIIDQ+TFE+LHAHQ EYALSL+S K G+DPNTYF++GTA
Sbjct: 775 TAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTA 834
Query: 1051 VVHPEENEPKQGRIIIFHYDDGKLQQIAEKEIKGACYSMCEFNGKLLASINSTVRLFEWT 1110
+V+PEE EPKQGRI++F Y DGKLQ +AEKE+KGA YSM EFNGKLLASINSTVRL+EWT
Sbjct: 835 MVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWT 894
Query: 1111 NEKELRLECSHFNNIIALFLKVKGDFILVGDLMRSLTLLQYKTMEGSFEEISRDYNPNWM 1170
EKELR EC+H+NNI+AL+LK KGDFILVGDLMRS+ LL YK MEG+FEEI+RD+NPNWM
Sbjct: 895 TEKELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWM 954
Query: 1171 TSIEILDDELFLGAENSYNLFICQKDSAATSDEDRTHLQEVGTVHL 1216
+++EILDD+ FLGAEN++NLF+CQKDSAAT+DE+R HLQEVG HL
Sbjct: 955 SAVEILDDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFHL 1000
Score = 87.8 bits (216), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 45/68 (66%), Positives = 49/68 (72%)
Query: 1 EGSLRIIRNGIGIEEHACIDLPGIKGIWALSIGSPKNLDNTLVLSFVGHTRVLTLSGAEW 60
EGSLRIIRNGIGI EHA IDLPGIKG+W L + D+TLVLSFVG TRVL L+G E
Sbjct: 384 EGSLRIIRNGIGIHEHASIDLPGIKGLWPLRSDPNRETDDTLVLSFVGQTRVLMLNGEEV 443
Query: 61 GFHLLRGF 68
L GF
Sbjct: 444 EETELMGF 451
Score = 87.0 bits (214), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 42/81 (51%), Positives = 59/81 (72%)
Query: 625 NFTSSTDLNLVVAKNNRIEIHTVTPEGLRPVKEIFLYGKIAVMKFFRGPTDKKDLLFIIT 684
+FTS+ DLNL++AKN R+EI+ VT EGLRPVKE+ +YGKIAVM+ FR + KDLLFI+T
Sbjct: 22 HFTSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGKIAVMELFRPKGESKDLLFILT 81
Query: 685 QRTDLNLVVAKNNRIEIHTVT 705
+ + ++ K + I +T
Sbjct: 82 AKYNACILEYKQSGESIDIIT 102
>sp|P33194|DDB1_CHLAE DNA damage-binding protein 1 OS=Chlorocebus aethiops GN=DDB1 PE=1
SV=1
Length = 1140
Score = 719 bits (1855), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 360/544 (66%), Positives = 430/544 (79%), Gaps = 14/544 (2%)
Query: 81 RYLLGDLAGRLFMLLLEKEEKMDGTFSVKEPKVELLGEISIPECLTYLDNGVVFVGSRLG 140
RYLLGD+ GRLFMLLLEKEE+MDGT ++K+ +VELLGE SI ECLTYLDNGVVFVGSRLG
Sbjct: 270 RYLLGDMEGRLFMLLLEKEEQMDGTVTLKDLRVELLGETSIAECLTYLDNGVVFVGSRLG 329
Query: 141 DSQLVKLNRSPDENGTYVSVMESFTNLAPIIDMVVVDLERQGQGQLVTCSGGFKEGSLRI 200
DSQLVKLN +E G+YV ME+FTNL PI+DM VVDLERQGQGQLVTCSG FKEGSLRI
Sbjct: 330 DSQLVKLNVDSNEQGSYVVAMETFTNLGPIVDMCVVDLERQGQGQLVTCSGAFKEGSLRI 389
Query: 201 IRNGIGIEEHACIDLPGIKGIWALSIGSPKNLDNTLVLSFVGHTRVLTLSGAEVEETEMG 260
IRNGIGI EHA IDLPGIKG+W L + D+TLVLSFVG TRVL L+G EVEETE+
Sbjct: 390 IRNGIGIHEHASIDLPGIKGLWPLRSDPNRETDDTLVLSFVGQTRVLMLNGEEVEETELM 449
Query: 261 GFTSDQQTFYCGNVDPRTVLQVTPSAAILISTESKARVSSWEPPNGKSISVVSCNKNQVL 320
GF DQQTF+CGNV + ++Q+T ++ L+S E KA VS W+ P K+ISV SCN +QV+
Sbjct: 450 GFVDDQQTFFCGNVAHQQLIQITSASVRLVSQEPKALVSEWKEPQAKNISVASCNSSQVV 509
Query: 321 CATGCDVYYLEVHGSEIKQLAHRALEYEVACLDISPLSNEETSSEPAKAQLAAVGLWTDI 380
A G +YYL++H E++Q++H +E+EVACLDI+PL + S L A+GLWTDI
Sbjct: 510 VAVGRALYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGLSP-----LCAIGLWTDI 564
Query: 381 SARLLSLPSLEEVCKEPLGGEIIPRSILMTCFEGHCYLLVALGDGSMFYFSLDPASGRLT 440
SAR+L LPS E + KE LGGEIIPRSILMT FE YLL ALGDG++FYF L+ +G L+
Sbjct: 565 SARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLLS 624
Query: 441 DKKKVTLGTQPTVLKTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLRQVNHMCSLNA 500
D+KKVTLGTQPTVL+TFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNL++VN+MC LN+
Sbjct: 625 DRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLKEVNYMCPLNS 684
Query: 501 ESYPDSLALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQE 560
+ YPDSLALA +ST T GTIDEIQKLHIRTVPL E+PR+I YQE SQ FGV+++RI++Q+
Sbjct: 685 DGYPDSLALANNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQD 744
Query: 561 -ADGSTPVRPSASTQAQNTTSSTISSLSYIKPGSTKQSTANQPADFNMEVEVHNLLIIDQ 619
+ G+T +RPSASTQA +++ S+ STA F EVEVHNLLIIDQ
Sbjct: 745 TSGGTTALRPSASTQALSSSVSSSK--------LFSSSTAPHETSFGEEVEVHNLLIIDQ 796
Query: 620 NTFE 623
+TFE
Sbjct: 797 HTFE 800
Score = 407 bits (1047), Expect = e-112, Method: Compositional matrix adjust.
Identities = 190/285 (66%), Positives = 237/285 (83%)
Query: 683 ITQRTDLNLVVAKNNRIEIHTVTPEGLRPVKEIFLYGKIAVMKFFRGPTDKKDLLFIITQ 742
T DLNL++AKN R+EI+ VT EGLRPVKE+ +YGKIAVM+ FR + KDLLFI+T
Sbjct: 23 FTSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGKIAVMELFRPKGESKDLLFILTA 82
Query: 743 RYNAMILECRGDIDNLEILTKAHGNVSDRIGKPSENGIIAIIDPEARVIGLRLYNGLFKI 802
+YNA ILE + ++++I+T+AHGNV DRIG+PSE GII IIDPE R+IGLRLY+GLFK+
Sbjct: 83 KYNACILEYKQSGESIDIITRAHGNVQDRIGRPSETGIIGIIDPECRMIGLRLYDGLFKV 142
Query: 803 IPLEKDNFELKASSIRMEELEIQDVQFLHGCQNPTIICIHQDVNGRHVKTHEISLKEKEF 862
IPL++DN ELKA +IR+EEL + DV+FL+GCQ PTI ++QD GRHVKT+E+SL+EKEF
Sbjct: 143 IPLDRDNKELKAFNIRLEELHVIDVKFLYGCQAPTICFVYQDPQGRHVKTYEVSLREKEF 202
Query: 863 TKTPWKQDNIEMEASLVIPVPEPLGGAIIIGQESILYHSGKSYVAVAPQIIKSSTIVCYA 922
K PWKQ+N+E EAS+VI VPEP GGAIIIGQESI YH+G Y+A+AP IIK STIVC+
Sbjct: 203 NKGPWKQENVEAEASMVIAVPEPFGGAIIIGQESITYHNGDKYLAIAPPIIKQSTIVCHN 262
Query: 923 KVDANGERYLLGDLAGRLFMLLLEKEEKMDGTFSVKEPKVELLGE 967
+VD NG RYLLGD+ GRLFMLLLEKEE+MDGT ++K+ +VELLGE
Sbjct: 263 RVDPNGSRYLLGDMEGRLFMLLLEKEEQMDGTVTLKDLRVELLGE 307
Score = 369 bits (948), Expect = e-101, Method: Compositional matrix adjust.
Identities = 167/226 (73%), Positives = 197/226 (87%)
Query: 991 TANQPADFNMEVEVHNLLIIDQNTFEILHAHQLFPGEYALSLISSKFGEDPNTYFVLGTA 1050
TA F EVEVHNLLIIDQ+TFE+LHAHQ EYALSL+S K G+DPNTYF++GTA
Sbjct: 775 TAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTA 834
Query: 1051 VVHPEENEPKQGRIIIFHYDDGKLQQIAEKEIKGACYSMCEFNGKLLASINSTVRLFEWT 1110
+V+PEE EPKQGRI++F Y DGKLQ +AEKE+KGA YSM EFNGKLLASINSTVRL+EWT
Sbjct: 835 MVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWT 894
Query: 1111 NEKELRLECSHFNNIIALFLKVKGDFILVGDLMRSLTLLQYKTMEGSFEEISRDYNPNWM 1170
EKELR EC+H+NNI+AL+LK KGDFILVGDLMRS+ LL YK MEG+FEEI+RD+NPNWM
Sbjct: 895 TEKELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWM 954
Query: 1171 TSIEILDDELFLGAENSYNLFICQKDSAATSDEDRTHLQEVGTVHL 1216
+++EILDD+ FLGAEN++NLF+CQKDSAAT+DE+R HLQEVG HL
Sbjct: 955 SAVEILDDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFHL 1000
Score = 87.8 bits (216), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 45/68 (66%), Positives = 49/68 (72%)
Query: 1 EGSLRIIRNGIGIEEHACIDLPGIKGIWALSIGSPKNLDNTLVLSFVGHTRVLTLSGAEW 60
EGSLRIIRNGIGI EHA IDLPGIKG+W L + D+TLVLSFVG TRVL L+G E
Sbjct: 384 EGSLRIIRNGIGIHEHASIDLPGIKGLWPLRSDPNRETDDTLVLSFVGQTRVLMLNGEEV 443
Query: 61 GFHLLRGF 68
L GF
Sbjct: 444 EETELMGF 451
Score = 87.4 bits (215), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 48/108 (44%), Positives = 65/108 (60%), Gaps = 13/108 (12%)
Query: 598 TANQPADFNMEVEVHNLLIIDQNTFERNFTSSTDLNLVVAKNNRIEIHTVTPEGLRPVKE 657
TA +P N V H FTS+ DLNL++AKN R+EI+ VT EGLRPVKE
Sbjct: 8 TAQKPTAVNGCVTAH-------------FTSAEDLNLLIAKNTRLEIYVVTAEGLRPVKE 54
Query: 658 IFLYGKIAVMKFFRGPTDKKDLLFIITQRTDLNLVVAKNNRIEIHTVT 705
+ +YGKIAVM+ FR + KDLLFI+T + + ++ K + I +T
Sbjct: 55 VGMYGKIAVMELFRPKGESKDLLFILTAKYNACILEYKQSGESIDIIT 102
>sp|Q9ESW0|DDB1_RAT DNA damage-binding protein 1 OS=Rattus norvegicus GN=Ddb1 PE=2 SV=1
Length = 1140
Score = 710 bits (1832), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 355/544 (65%), Positives = 427/544 (78%), Gaps = 14/544 (2%)
Query: 81 RYLLGDLAGRLFMLLLEKEEKMDGTFSVKEPKVELLGEISIPECLTYLDNGVVFVGSRLG 140
RYLLGD+ GRLFMLLLEKEE+MDGT ++K+ +VELLGE SI ECLTYLDNGVVFVGSRLG
Sbjct: 270 RYLLGDMEGRLFMLLLEKEEQMDGTVTLKDLRVELLGETSIAECLTYLDNGVVFVGSRLG 329
Query: 141 DSQLVKLNRSPDENGTYVSVMESFTNLAPIIDMVVVDLERQGQGQLVTCSGGFKEGSLRI 200
DSQ VKLN +E G+YV ME+FTNL PI+DM VVDLERQGQGQLVTCSG FKEGSLRI
Sbjct: 330 DSQPVKLNVDSNEQGSYVVAMETFTNLGPIVDMCVVDLERQGQGQLVTCSGAFKEGSLRI 389
Query: 201 IRNGIGIEEHACIDLPGIKGIWALSIGSPKNLDNTLVLSFVGHTRVLTLSGAEVEETEMG 260
IRNGIGI EHA IDLPGIKG+W L + D+TLVLSFVG TRVL L+G EVEETE+
Sbjct: 390 IRNGIGIHEHASIDLPGIKGLWPLRSDPNRETDDTLVLSFVGQTRVLMLNGEEVEETELM 449
Query: 261 GFTSDQQTFYCGNVDPRTVLQVTPSAAILISTESKARVSSWEPPNGKSISVVSCNKNQVL 320
GF DQQTF+CGNV + ++Q+T ++ L+S E KA VS W+ P K+ISV SCN +QV+
Sbjct: 450 GFVDDQQTFFCGNVAHQQLIQITSASVRLVSQEPKALVSEWKEPRAKNISVASCNSSQVV 509
Query: 321 CATGCDVYYLEVHGSEIKQLAHRALEYEVACLDISPLSNEETSSEPAKAQLAAVGLWTDI 380
A G +YYL++H E++Q++H +E+EVACLD++PL + S L A+GLWTDI
Sbjct: 510 VAVGRALYYLQIHPQELRQISHTEMEHEVACLDVTPLGDSNGLSP-----LCAIGLWTDI 564
Query: 381 SARLLSLPSLEEVCKEPLGGEIIPRSILMTCFEGHCYLLVALGDGSMFYFSLDPASGRLT 440
SAR+L LPS E + KE LGGEIIPRSILMT FE YLL ALGDG++FYF L+ +G L+
Sbjct: 565 SARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLLS 624
Query: 441 DKKKVTLGTQPTVLKTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLRQVNHMCSLNA 500
D+KKVTLGTQPTVL+TFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNL++VN+MC LN+
Sbjct: 625 DRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLKEVNYMCPLNS 684
Query: 501 ESYPDSLALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQE 560
+ YPDSLALA ST T GT++EIQKLHIRTVP+ E+PR+I YQE SQ FGV++TRI++Q+
Sbjct: 685 DGYPDSLALANTSTLTIGTMNEIQKLHIRTVPIYESPRKICYQEVSQCFGVLSTRIEVQD 744
Query: 561 -ADGSTPVRPSASTQAQNTTSSTISSLSYIKPGSTKQSTANQPADFNMEVEVHNLLIIDQ 619
+ G+T +RPSASTQA +++ S+ S A F EVEVHNLLIIDQ
Sbjct: 745 TSGGTTALRPSASTQALSSSVSSSK--------LFSSSAAPHETSFGEEVEVHNLLIIDQ 796
Query: 620 NTFE 623
+TFE
Sbjct: 797 HTFE 800
Score = 407 bits (1046), Expect = e-112, Method: Compositional matrix adjust.
Identities = 197/335 (58%), Positives = 253/335 (75%), Gaps = 8/335 (2%)
Query: 684 TQRTDLNLVVAKNNRIEIHTVTPEGLRPVKEIFLYGKIAVMKFFRGPTDKKDLLFIITQR 743
T D+NL++AKN R+EI+ VT EGLRPVKE+ +YGKIAVM+ FR + KDLLFI+T +
Sbjct: 24 TSAEDINLLIAKNTRLEIYVVTAEGLRPVKEVGMYGKIAVMELFRPKGESKDLLFILTAK 83
Query: 744 YNAMILECRGDIDNLEILTKAHGNVSDRIGKPSENGIIAIIDPEARVIGLRLYNGLFKII 803
YNA ILE + ++++I+T+AHGNV DRIG+PSE GII IIDPE R+IGLRLY+GLFK+I
Sbjct: 84 YNACILEYKQSGESIDIITRAHGNVQDRIGRPSETGIIGIIDPECRMIGLRLYDGLFKVI 143
Query: 804 PLEKDNFELKASSIRMEELEIQDVQFLHGCQNPTIICIHQDVNGRHVKTHEISLKEKEFT 863
PL++DN ELKA +IR+EEL + DV+FL+GCQ PTI ++QD GRHVKT+E+SL+EKEF
Sbjct: 144 PLDRDNKELKAFNIRLEELHVIDVKFLYGCQAPTICFVYQDPQGRHVKTYEVSLREKEFN 203
Query: 864 KTPWKQDNIEMEASLVIPVPEPLGGAIIIGQESILYHSGKSYVAVAPQIIKSSTIVCYAK 923
K PWKQ+N+E EAS+VI VPEP GGAIIIGQESI YH+G Y+A+AP IIK STIVC+ +
Sbjct: 204 KGPWKQENVEAEASMVIAVPEPFGGAIIIGQESITYHNGDKYLAIAPPIIKQSTIVCHNR 263
Query: 924 VDANGERYLLGDLAGRLFMLLLEKEEKMDGTFSVKEPKVELLGEHCKGPVVEMSSLSYIK 983
VD NG RYLLGD+ GRLFMLLLEKEE+MDGT ++K+ +VELLGE L+Y+
Sbjct: 264 VDPNGSRYLLGDMEGRLFMLLLEKEEQMDGTVTLKDLRVELLGETSIA-----ECLTYLD 318
Query: 984 PGST---KQSTANQPADFNMEVEVHNLLIIDQNTF 1015
G + +QP N++ ++ TF
Sbjct: 319 NGVVFVGSRLGDSQPVKLNVDSNEQGSYVVAMETF 353
Score = 365 bits (936), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 165/225 (73%), Positives = 195/225 (86%)
Query: 992 ANQPADFNMEVEVHNLLIIDQNTFEILHAHQLFPGEYALSLISSKFGEDPNTYFVLGTAV 1051
A F EVEVHNLLIIDQ+TFE+LHAHQ EYALSL+S K G+DPNTYF++GTA+
Sbjct: 776 APHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAM 835
Query: 1052 VHPEENEPKQGRIIIFHYDDGKLQQIAEKEIKGACYSMCEFNGKLLASINSTVRLFEWTN 1111
V+PEE EPKQGRI++F Y GKLQ +AEKE+KGA YSM EFNGKLLASINSTVRL+EWT
Sbjct: 836 VYPEEAEPKQGRIVVFQYSGGKLQTVAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTT 895
Query: 1112 EKELRLECSHFNNIIALFLKVKGDFILVGDLMRSLTLLQYKTMEGSFEEISRDYNPNWMT 1171
EKELR EC+H+NNI+AL+LK KGDFILVGDLMRS+ LL YK MEG+FEEI+RD+NPNWM+
Sbjct: 896 EKELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMS 955
Query: 1172 SIEILDDELFLGAENSYNLFICQKDSAATSDEDRTHLQEVGTVHL 1216
++EILDD+ FLGAEN++NLF+CQKDSAAT+DE+R HLQEVG HL
Sbjct: 956 AVEILDDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFHL 1000
Score = 87.8 bits (216), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 45/68 (66%), Positives = 49/68 (72%)
Query: 1 EGSLRIIRNGIGIEEHACIDLPGIKGIWALSIGSPKNLDNTLVLSFVGHTRVLTLSGAEW 60
EGSLRIIRNGIGI EHA IDLPGIKG+W L + D+TLVLSFVG TRVL L+G E
Sbjct: 384 EGSLRIIRNGIGIHEHASIDLPGIKGLWPLRSDPNRETDDTLVLSFVGQTRVLMLNGEEV 443
Query: 61 GFHLLRGF 68
L GF
Sbjct: 444 EETELMGF 451
Score = 85.9 bits (211), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 41/81 (50%), Positives = 59/81 (72%)
Query: 625 NFTSSTDLNLVVAKNNRIEIHTVTPEGLRPVKEIFLYGKIAVMKFFRGPTDKKDLLFIIT 684
+FTS+ D+NL++AKN R+EI+ VT EGLRPVKE+ +YGKIAVM+ FR + KDLLFI+T
Sbjct: 22 HFTSAEDINLLIAKNTRLEIYVVTAEGLRPVKEVGMYGKIAVMELFRPKGESKDLLFILT 81
Query: 685 QRTDLNLVVAKNNRIEIHTVT 705
+ + ++ K + I +T
Sbjct: 82 AKYNACILEYKQSGESIDIIT 102
>sp|Q9XYZ5|DDB1_DROME DNA damage-binding protein 1 OS=Drosophila melanogaster GN=pic PE=1
SV=1
Length = 1140
Score = 676 bits (1745), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 349/544 (64%), Positives = 423/544 (77%), Gaps = 13/544 (2%)
Query: 81 RYLLGDLAGRLFMLLLEKEEKMDGTFSVKEPKVELLGEISIPECLTYLDNGVVFVGSRLG 140
RYLLG++ G+L+ML L E G +VK+ KVE LGEISIPEC+TYLDNG +++G+R G
Sbjct: 270 RYLLGNMDGQLYMLFLGTAETSKGV-TVKDIKVEQLGEISIPECITYLDNGFLYIGARHG 328
Query: 141 DSQLVKLNRSPDENGTYVSVMESFTNLAPIIDMVVVDLERQGQGQLVTCSGGFKEGSLRI 200
DSQLV+LN S +G+YV +E+FTNLAPI+D+ VVDL+RQGQGQ++TCSG FK+GSLRI
Sbjct: 329 DSQLVRLN-SEAIDGSYVVPVENFTNLAPILDIAVVDLDRQGQGQIITCSGSFKDGSLRI 387
Query: 201 IRNGIGIEEHACIDLPGIKGIWALSIGSPKN-LDNTLVLSFVGHTRVLTLSGAEVEETEM 259
IR GIGI+EHACIDLPGIKG+W+L +G ++ +NTLVL+FVGHTR+LTLSG EVEETE+
Sbjct: 388 IRIGIGIQEHACIDLPGIKGMWSLKVGVDESPYENTLVLAFVGHTRILTLSGEEVEETEI 447
Query: 260 GGFTSDQQTFYCGNVDPRTVLQVTPSAAILISTESKARVSSWEPPNGKSISVVSCNKNQV 319
GF SD QTF C NVD ++QVT + L+S+ +KA V+ W P ++I VVSCN Q+
Sbjct: 448 PGFASDLQTFLCSNVDYDQLIQVTSDSVRLVSSATKALVAEWRPTGDRTIGVVSCNTTQI 507
Query: 320 LCATGCDVYYLEVHGSEIKQLAHRALEYEVACLDISPLSNEETSSEPAKAQLAAVGLWTD 379
L A+ CD++Y+ + +++ + R L YEVACLDI+PL +ET K+ L AVGLWTD
Sbjct: 508 LVASACDIFYIVIEDGSLREQSRRTLAYEVACLDITPL--DETQK---KSDLVAVGLWTD 562
Query: 380 ISARLLSLPSLEEVCKEPLGGEIIPRSILMTCFEGHCYLLVALGDGSMFYFSLDPASGRL 439
ISA +LSLP LE + E L GEIIPRSILMT FEG YLL ALGDGSM+YF +D +G+L
Sbjct: 563 ISAVILSLPDLETIYTEKLSGEIIPRSILMTTFEGIHYLLCALGDGSMYYFIMDQTTGQL 622
Query: 440 TDKKKVTLGTQPTVLKTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLRQVNHMCSLN 499
TDKKKVTLGTQPT L+TFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNL++VNHMCSLN
Sbjct: 623 TDKKKVTLGTQPTTLRTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLKEVNHMCSLN 682
Query: 500 AESYPDSLALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQ 559
A++YPDSLALA + GTIDEIQKLHIRTVPLGE PRRIAYQESSQTF V T RID+
Sbjct: 683 AQAYPDSLALANKNAVILGTIDEIQKLHIRTVPLGEGPRRIAYQESSQTFAVSTLRIDVH 742
Query: 560 EADGSTPVRPSASTQAQNTTSSTISSLSYIKPGSTKQSTANQPADFNMEVEVHNLLIIDQ 619
G+ P+R SASTQAQN T SS KPG + AN A+ E++VHNLL+IDQ
Sbjct: 743 GRGGAKPLRNSASTQAQNITC---SSNFLPKPGGGNSTAAN--AEVGQEIDVHNLLVIDQ 797
Query: 620 NTFE 623
NTFE
Sbjct: 798 NTFE 801
Score = 365 bits (937), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 172/284 (60%), Positives = 223/284 (78%), Gaps = 1/284 (0%)
Query: 684 TQRTDLNLVVAKNNRIEIHTVTPEGLRPVKEIFLYGKIAVMKFFRGPTDKKDLLFIITQR 743
T TDLNL++A+NN++EI VTPEGLRP+KEI + G IAVM+ FR P KDLLFI+T+R
Sbjct: 24 TSPTDLNLIIARNNQVEIDLVTPEGLRPLKEININGTIAVMRHFRPPDSNKDLLFILTRR 83
Query: 744 YNAMILECRGDIDNLEILTKAHGNVSDRIGKPSENGIIAIIDPEARVIGLRLYNGLFKII 803
YN MILE R D + ++TKA+GNVSD +G PSE G+IA IDP+ARVIG+ LY GLF II
Sbjct: 84 YNVMILEARMVNDVITVVTKANGNVSDSVGIPSEGGVIAAIDPKARVIGMCLYQGLFTII 143
Query: 804 PLEKDNFELKASSIRMEELEIQDVQFLHGCQNPTIICIHQDVNGRHVKTHEISLKEKEFT 863
P++KD ELKA+++RM+EL + DV+FLHGC NPT+I IH+D +GRHVK+HEI+L++KEF
Sbjct: 144 PMDKDASELKATNLRMDELNVYDVEFLHGCLNPTVIVIHKDSDGRHVKSHEINLRDKEFM 203
Query: 864 KTPWKQDNIEMEASLVIPVPEPLGGAIIIGQESILYHSGKSYVAVAPQIIKSSTIVCYAK 923
K WKQDN+E EA+++IPVP P+GG I+IG+ESI+YH G +Y AVAP + STI CYA+
Sbjct: 204 KIAWKQDNVETEATMLIPVPSPIGGVIVIGRESIVYHDGSNYHAVAPLTFRQSTINCYAR 263
Query: 924 VDANGERYLLGDLAGRLFMLLLEKEEKMDGTFSVKEPKVELLGE 967
V +NG RYLLG++ G+L+ML L E G +VK+ KVE LGE
Sbjct: 264 VSSNGLRYLLGNMDGQLYMLFLGTAETSKGV-TVKDIKVEQLGE 306
Score = 311 bits (796), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 155/276 (56%), Positives = 197/276 (71%), Gaps = 13/276 (4%)
Query: 954 TFSVKEPKVELLGEHCKGPV----------VEMSSLSYIKPGSTKQSTANQPADFNMEVE 1003
TF+V ++++ G P+ + SS KPG + AN A+ E++
Sbjct: 731 TFAVSTLRIDVHGRGGAKPLRNSASTQAQNITCSSNFLPKPGGGNSTAAN--AEVGQEID 788
Query: 1004 VHNLLIIDQNTFEILHAHQLFPGEYALSLISSKFGEDPNTYFVLGTAVVHPEENEPKQGR 1063
VHNLL+IDQNTFE+LHAHQ E SL+S+K G+DPNTY+V+ T++V PEE EPK GR
Sbjct: 789 VHNLLVIDQNTFEVLHAHQFVAPETISSLMSAKLGDDPNTYYVVATSLVIPEEPEPKVGR 848
Query: 1064 IIIFHYDDGKLQQIAEKEIKGACYSMCEFNGKLLASINSTVRLFEWTNEKELRLECSHFN 1123
IIIFHY + KL Q+AE ++ G CY++ EFNGK+LA I S VRL+EWTNEKELR+EC+ N
Sbjct: 849 IIIFHYHENKLTQVAETKVDGTCYALVEFNGKVLAGIGSFVRLYEWTNEKELRMECNIQN 908
Query: 1124 NIIALFLKVKGDFILVGDLMRSLTLLQYKTMEGSFEEISRDYNPNWMTSIEILDDELFLG 1183
I ALFLK KGDFILVGDLMRS+TLLQ+K MEG F EI+RD P WM ++EILDD+ FLG
Sbjct: 909 MIAALFLKAKGDFILVGDLMRSITLLQHKQMEGIFVEIARDCEPKWMRAVEILDDDTFLG 968
Query: 1184 AENSYNLFICQKDSAATSDEDRTHLQEVGTVHLVGD 1219
+E + NLF+CQKDSAAT+DE+R L E+ HL GD
Sbjct: 969 SETNGNLFVCQKDSAATTDEERQLLPELARFHL-GD 1003
Score = 91.7 bits (226), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 42/71 (59%), Positives = 57/71 (80%)
Query: 625 NFTSSTDLNLVVAKNNRIEIHTVTPEGLRPVKEIFLYGKIAVMKFFRGPTDKKDLLFIIT 684
NFTS TDLNL++A+NN++EI VTPEGLRP+KEI + G IAVM+ FR P KDLLFI+T
Sbjct: 22 NFTSPTDLNLIIARNNQVEIDLVTPEGLRPLKEININGTIAVMRHFRPPDSNKDLLFILT 81
Query: 685 QRTDLNLVVAK 695
+R ++ ++ A+
Sbjct: 82 RRYNVMILEAR 92
Score = 75.9 bits (185), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/71 (64%), Positives = 58/71 (81%), Gaps = 1/71 (1%)
Query: 1 EGSLRIIRNGIGIEEHACIDLPGIKGIWALSIGSPKN-LDNTLVLSFVGHTRVLTLSGAE 59
+GSLRIIR GIGI+EHACIDLPGIKG+W+L +G ++ +NTLVL+FVGHTR+LTLSG E
Sbjct: 382 DGSLRIIRIGIGIQEHACIDLPGIKGMWSLKVGVDESPYENTLVLAFVGHTRILTLSGEE 441
Query: 60 WGFHLLRGFSS 70
+ GF+S
Sbjct: 442 VEETEIPGFAS 452
>sp|Q9M0V3|DDB1A_ARATH DNA damage-binding protein 1a OS=Arabidopsis thaliana GN=DDB1A PE=1
SV=1
Length = 1088
Score = 499 bits (1284), Expect = e-140, Method: Compositional matrix adjust.
Identities = 254/476 (53%), Positives = 338/476 (71%), Gaps = 14/476 (2%)
Query: 81 RYLLGDLAGRLFMLLLEKE-EKMDGTFSVKEPKVELLGEISIPECLTYLDNGVVFVGSRL 139
RYLLGD AG + +L++ E EK+ G K+ELLGE SI ++YLDN VVFVGS
Sbjct: 267 RYLLGDHAGMIHLLVITHEKEKVTGL------KIELLGETSIASTISYLDNAVVFVGSSY 320
Query: 140 GDSQLVKLNRSPDENGTYVSVMESFTNLAPIIDMVVVDLERQGQGQLVTCSGGFKEGSLR 199
GDSQLVKLN PD G+YV V+E + NL PI+D VVDLERQGQGQ+VTCSG FK+GSLR
Sbjct: 321 GDSQLVKLNLHPDAKGSYVEVLERYINLGPIVDFCVVDLERQGQGQVVTCSGAFKDGSLR 380
Query: 200 IIRNGIGIEEHACIDLPGIKGIWALSIGSPKNLDNTLVLSFVGHTRVLTLS-GAEVEETE 258
++RNGIGI E A ++L GIKG+W+L + D LV+SF+ TR+L ++ E+EETE
Sbjct: 381 VVRNGIGINEQASVELQGIKGMWSLKSSIDEAFDTFLVVSFISETRILAMNLEDELEETE 440
Query: 259 MGGFTSDQQTFYCGNVDPRTVLQVTPSAAILISTESKARVSSWEPPNGKSISVVSCNKNQ 318
+ GF S QT +C + ++QVT ++ L+S+ ++ W P G +++V + N +Q
Sbjct: 441 IEGFLSQVQTLFCHDAVYNQLVQVTSNSVRLVSSTTRELRDEWHAPAGFTVNVATANASQ 500
Query: 319 VLCATGC-DVYYLEVHGSEIKQLAHRALEYEVACLDISPLSNEETSSEPAKAQLAAVGLW 377
VL ATG + YLE+ ++ ++ H LEYEV+CLDI+P+ + P +QLAAVG+W
Sbjct: 501 VLLATGGGHLVYLEIGDGKLTEVQHALLEYEVSCLDINPIGDN-----PNYSQLAAVGMW 555
Query: 378 TDISARLLSLPSLEEVCKEPLGGEIIPRSILMTCFEGHCYLLVALGDGSMFYFSLDPASG 437
TDIS R+ SLP L + KE LGGEIIPRS+L+ FEG YLL ALGDG + F +D +G
Sbjct: 556 TDISVRIFSLPELTLITKEQLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFQMDTTTG 615
Query: 438 RLTDKKKVTLGTQPTVLKTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLRQVNHMCS 497
+L D+KKV+LGTQP L+TF S S T+VFA SDRPTVIYSSN KL++SNVNL++V+HMC
Sbjct: 616 QLKDRKKVSLGTQPITLRTFSSKSATHVFAASDRPTVIYSSNKKLLYSNVNLKEVSHMCP 675
Query: 498 LNAESYPDSLALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVIT 553
N+ ++PDSLA+A + T GTID+IQKLHIRT+PLGE RRI +QE ++TFG+ +
Sbjct: 676 FNSAAFPDSLAIAREGELTIGTIDDIQKLHIRTIPLGEHARRICHQEQTRTFGICS 731
Score = 267 bits (682), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 134/287 (46%), Positives = 201/287 (70%), Gaps = 13/287 (4%)
Query: 683 ITQRTDLNLVVAKNNRIEIHTVTPEGLRPVKEIFLYGKIAVMKFFRGPTDKKDLLFIITQ 742
T +LNL+VAK RIEIH +TP+GL+P+ ++ +YG+IA ++ FR + +D LFI T+
Sbjct: 24 FTSPQELNLIVAKCTRIEIHLLTPQGLQPMLDVPIYGRIATLELFRPHGEAQDFLFIATE 83
Query: 743 RYNAMILECRGDIDNLEILTKAHGNVSDRIGKPSENGIIAIIDPEARVIGLRLYNGLFKI 802
RY +L+ D ++ E++T+A G+VSDRIG+P++NG I IIDP+ R+IGL LY+GLFK+
Sbjct: 84 RYKFCVLQW--DPESSELITRAMGDVSDRIGRPTDNGQIGIIDPDCRLIGLHLYDGLFKV 141
Query: 803 IPLEKDNFELKASSIRMEELEIQDVQFLHGCQNPTIICIHQD-VNGRHVKTHEISLKEKE 861
IP + +A +IR+EEL++ D++FL GC PTI ++QD + RHVKT+E+SLK+K+
Sbjct: 142 IPFDNKGQLKEAFNIRLEELQVLDIKFLFGCAKPTIAVLYQDNKDARHVKTYEVSLKDKD 201
Query: 862 FTKTPWKQDNIEMEASLVIPVPEPLGGAIIIGQESILYHSGKSYVAVAPQIIKSSTIVCY 921
F + PW Q++++ A L+IPVP PL G +IIG+E+I+Y S ++ A+ I+ S Y
Sbjct: 202 FVEGPWSQNSLDNGADLLIPVPPPLCGVLIIGEETIVYCSASAFKAIP---IRPSITKAY 258
Query: 922 AKVDANGERYLLGDLAGRLFMLLLEKE-EKMDGTFSVKEPKVELLGE 967
+VD +G RYLLGD AG + +L++ E EK+ G K+ELLGE
Sbjct: 259 GRVDVDGSRYLLGDHAGMIHLLVITHEKEKVTGL------KIELLGE 299
Score = 239 bits (610), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 111/220 (50%), Positives = 159/220 (72%), Gaps = 4/220 (1%)
Query: 1001 EVEVHNLLIIDQNTFEILHAHQLFPGEYALSLISSKFGEDPNTYFVLGTAVVHPEENEPK 1060
E E+H + ++D TFE + + L EY S++S F ED N Y+ +GTA V PEENEP
Sbjct: 740 ESEMHFVRLLDDQTFEFMSTYPLDSFEYGCSILSCSFTEDKNVYYCVGTAYVLPEENEPT 799
Query: 1061 QGRIIIFHYDDGKLQQIAEKEIKGACYSMCEFNGKLLASINSTVRLFEWT----NEKELR 1116
+GRI++F +DG+LQ IAEKE KGA YS+ FNGKLLA+IN ++L++W +EL+
Sbjct: 800 KGRILVFIVEDGRLQLIAEKETKGAVYSLNAFNGKLLAAINQKIQLYKWMLRDDGTRELQ 859
Query: 1117 LECSHFNNIIALFLKVKGDFILVGDLMRSLTLLQYKTMEGSFEEISRDYNPNWMTSIEIL 1176
EC H +I+AL+++ +GDFI+VGDLM+S++LL YK EG+ EE +RDYN NWM+++EIL
Sbjct: 860 SECGHHGHILALYVQTRGDFIVVGDLMKSISLLLYKHEEGAIEERARDYNANWMSAVEIL 919
Query: 1177 DDELFLGAENSYNLFICQKDSAATSDEDRTHLQEVGTVHL 1216
DD+++LGAEN++NL +K+S +DE+R L+ VG HL
Sbjct: 920 DDDIYLGAENNFNLLTVKKNSEGATDEERGRLEVVGEYHL 959
Score = 73.2 bits (178), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 32/62 (51%), Positives = 47/62 (75%)
Query: 625 NFTSSTDLNLVVAKNNRIEIHTVTPEGLRPVKEIFLYGKIAVMKFFRGPTDKKDLLFIIT 684
NFTS +LNL+VAK RIEIH +TP+GL+P+ ++ +YG+IA ++ FR + +D LFI T
Sbjct: 23 NFTSPQELNLIVAKCTRIEIHLLTPQGLQPMLDVPIYGRIATLELFRPHGEAQDFLFIAT 82
Query: 685 QR 686
+R
Sbjct: 83 ER 84
Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 40/56 (71%)
Query: 1 EGSLRIIRNGIGIEEHACIDLPGIKGIWALSIGSPKNLDNTLVLSFVGHTRVLTLS 56
+GSLR++RNGIGI E A ++L GIKG+W+L + D LV+SF+ TR+L ++
Sbjct: 376 DGSLRVVRNGIGINEQASVELQGIKGMWSLKSSIDEAFDTFLVVSFISETRILAMN 431
>sp|O49552|DDB1B_ARATH DNA damage-binding protein 1b OS=Arabidopsis thaliana GN=DDB1B PE=2
SV=2
Length = 1088
Score = 490 bits (1261), Expect = e-137, Method: Compositional matrix adjust.
Identities = 249/478 (52%), Positives = 337/478 (70%), Gaps = 14/478 (2%)
Query: 81 RYLLGDLAGRLFMLLLEKE-EKMDGTFSVKEPKVELLGEISIPECLTYLDNGVVFVGSRL 139
RYLLGD AG + +L++ E EK+ G K+ELLGE SI ++YLDN VVFVGS
Sbjct: 267 RYLLGDHAGLIHLLVITHEKEKVTGL------KIELLGETSIASSISYLDNAVVFVGSSY 320
Query: 140 GDSQLVKLNRSPDENGTYVSVMESFTNLAPIIDMVVVDLERQGQGQLVTCSGGFKEGSLR 199
GDSQL+KLN PD G+YV ++E + NL PI+D VVDLERQGQGQ+VTCSG +K+GSLR
Sbjct: 321 GDSQLIKLNLQPDAKGSYVEILEKYVNLGPIVDFCVVDLERQGQGQVVTCSGAYKDGSLR 380
Query: 200 IIRNGIGIEEHACIDLPGIKGIWALSIGSPKNLDNTLVLSFVGHTRVLTLS-GAEVEETE 258
I+RNGIGI E A ++L GIKG+W+L + D LV+SF+ TR+L ++ E+EETE
Sbjct: 381 IVRNGIGINEQASVELQGIKGMWSLKSSIDEAFDTFLVVSFISETRILAMNIEDELEETE 440
Query: 259 MGGFTSDQQTFYCGNVDPRTVLQVTPSAAILISTESKARVSSWEPPNGKSISVVSCNKNQ 318
+ GF S+ QT +C + ++QVT ++ L+S+ ++ + W+ P G S++V + N +Q
Sbjct: 441 IEGFLSEVQTLFCHDAVYNQLVQVTSNSVRLVSSTTRELRNKWDAPAGFSVNVATANASQ 500
Query: 319 VLCATGC-DVYYLEVHGSEIKQLAHRALEYEVACLDISPLSNEETSSEPAKAQLAAVGLW 377
VL ATG + YLE+ + ++ H LEYEV+CLDI+P+ + P +QLAAVG+W
Sbjct: 501 VLLATGGGHLVYLEIGDGTLTEVKHVLLEYEVSCLDINPIGDN-----PNYSQLAAVGMW 555
Query: 378 TDISARLLSLPSLEEVCKEPLGGEIIPRSILMTCFEGHCYLLVALGDGSMFYFSLDPASG 437
TDIS R+ LP L + KE LGGEIIPRS+L+ FEG YLL ALGDG + F LD + G
Sbjct: 556 TDISVRIFVLPDLTLITKEELGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFQLDTSCG 615
Query: 438 RLTDKKKVTLGTQPTVLKTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLRQVNHMCS 497
+L D+KKV+LGT+P L+TF S S T+VFA SDRP VIYS+N KL++SNVNL++V+HMC
Sbjct: 616 KLRDRKKVSLGTRPITLRTFSSKSATHVFAASDRPAVIYSNNKKLLYSNVNLKEVSHMCP 675
Query: 498 LNAESYPDSLALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTR 555
N+ ++PDSLA+A + T GTID+IQKLHIRT+P+GE RRI +QE ++TF + R
Sbjct: 676 FNSAAFPDSLAIAREGELTIGTIDDIQKLHIRTIPIGEHARRICHQEQTRTFAISCLR 733
Score = 270 bits (690), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 139/301 (46%), Positives = 207/301 (68%), Gaps = 18/301 (5%)
Query: 684 TQRTDLNLVVAKNNRIEIHTVTPEGLRPVKEIFLYGKIAVMKFFRGPTDKKDLLFIITQR 743
T +LNL+VAK+ RIEIH ++P+GL+ + ++ LYG+IA M+ FR + +D LF+ T+R
Sbjct: 25 TSPQELNLIVAKSTRIEIHLLSPQGLQTILDVPLYGRIATMELFRPHGEAQDFLFVATER 84
Query: 744 YNAMILECRGDIDNLEILTKAHGNVSDRIGKPSENGIIAIIDPEARVIGLRLYNGLFKII 803
Y +L+ D ++ E++T+A G+VSDRIG+P++NG I IIDP+ RVIGL LY+GLFK+I
Sbjct: 85 YKFCVLQW--DYESSELITRAMGDVSDRIGRPTDNGQIGIIDPDCRVIGLHLYDGLFKVI 142
Query: 804 PLEKDNFELKASSIRMEELEIQDVQFLHGCQNPTIICIHQD-VNGRHVKTHEISLKEKEF 862
P + +A +IR+EEL++ D++FL+GC PTI ++QD + RHVKT+E+SLK+K F
Sbjct: 143 PFDNKGQLKEAFNIRLEELQVLDIKFLYGCTKPTIAVLYQDNKDARHVKTYEVSLKDKNF 202
Query: 863 TKTPWKQDNIEMEASLVIPVPEPLGGAIIIGQESILYHSGKSYVAVAPQIIKSSTIVCYA 922
+ PW Q+N++ A L+IPVP PL G +IIG+E+I+Y S ++ A+ I+ S Y
Sbjct: 203 VEGPWSQNNLDNGADLLIPVPSPLCGVLIIGEETIVYCSANAFKAIP---IRPSITKAYG 259
Query: 923 KVDANGERYLLGDLAGRLFMLLLEKE-EKMDGTFSVKEPKVELLGEHCKGPVVEMSSLSY 981
+VD +G RYLLGD AG + +L++ E EK+ G K+ELLGE SS+SY
Sbjct: 260 RVDLDGSRYLLGDHAGLIHLLVITHEKEKVTGL------KIELLGETSIA-----SSISY 308
Query: 982 I 982
+
Sbjct: 309 L 309
Score = 224 bits (572), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 105/228 (46%), Positives = 159/228 (69%), Gaps = 6/228 (2%)
Query: 993 NQPADFNMEVEVHNLLIIDQNTFEILHAHQLFPGEYALSLISSKFGEDPNTYFVLGTAVV 1052
N+P+ E E H + ++D +FE L ++ L E S++S F +D N Y+ +GTA V
Sbjct: 734 NEPS--AEESESHFVRLLDAQSFEFLSSYPLDAFECGCSILSCSFTDDKNVYYCVGTAYV 791
Query: 1053 HPEENEPKQGRIIIFHYDDGKLQQIAEKEIKGACYSMCEFNGKLLASINSTVRLFEWT-- 1110
PEENEP +GRI++F ++G+LQ I EKE KGA YS+ FNGKLLASIN ++L++W
Sbjct: 792 LPEENEPTKGRILVFIVEEGRLQLITEKETKGAVYSLNAFNGKLLASINQKIQLYKWMLR 851
Query: 1111 --NEKELRLECSHFNNIIALFLKVKGDFILVGDLMRSLTLLQYKTMEGSFEEISRDYNPN 1168
+EL+ EC H +I+AL+++ +GDFI VGDLM+S++LL YK EG+ EE +RDYN N
Sbjct: 852 DDGTRELQSECGHHGHILALYVQTRGDFIAVGDLMKSISLLIYKHEEGAIEERARDYNAN 911
Query: 1169 WMTSIEILDDELFLGAENSYNLFICQKDSAATSDEDRTHLQEVGTVHL 1216
WMT++EIL+D+++LG +N +N+F +K++ +DE+R ++ VG H+
Sbjct: 912 WMTAVEILNDDIYLGTDNCFNIFTVKKNNEGATDEERARMEVVGEYHI 959
Score = 72.0 bits (175), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 31/62 (50%), Positives = 47/62 (75%)
Query: 625 NFTSSTDLNLVVAKNNRIEIHTVTPEGLRPVKEIFLYGKIAVMKFFRGPTDKKDLLFIIT 684
NFTS +LNL+VAK+ RIEIH ++P+GL+ + ++ LYG+IA M+ FR + +D LF+ T
Sbjct: 23 NFTSPQELNLIVAKSTRIEIHLLSPQGLQTILDVPLYGRIATMELFRPHGEAQDFLFVAT 82
Query: 685 QR 686
+R
Sbjct: 83 ER 84
Score = 63.9 bits (154), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 28/56 (50%), Positives = 40/56 (71%)
Query: 1 EGSLRIIRNGIGIEEHACIDLPGIKGIWALSIGSPKNLDNTLVLSFVGHTRVLTLS 56
+GSLRI+RNGIGI E A ++L GIKG+W+L + D LV+SF+ TR+L ++
Sbjct: 376 DGSLRIVRNGIGINEQASVELQGIKGMWSLKSSIDEAFDTFLVVSFISETRILAMN 431
>sp|Q6QNU4|DDB1_SOLLC DNA damage-binding protein 1 OS=Solanum lycopersicum GN=DDB1 PE=1
SV=1
Length = 1090
Score = 487 bits (1253), Expect = e-136, Method: Compositional matrix adjust.
Identities = 252/485 (51%), Positives = 335/485 (69%), Gaps = 14/485 (2%)
Query: 81 RYLLGDLAGRLFMLLLEKE-EKMDGTFSVKEPKVELLGEISIPECLTYLDNGVVFVGSRL 139
RYLLGD G L +L++ E EK+ G K+ELLGE SI ++YLDN VF+GS
Sbjct: 267 RYLLGDHNGLLHLLVITHEKEKVTGL------KIELLGETSIASTISYLDNAFVFIGSSY 320
Query: 140 GDSQLVKLNRSPDENGTYVSVMESFTNLAPIIDMVVVDLERQGQGQLVTCSGGFKEGSLR 199
GDSQLVKLN PD G+YV V+E + NL PI+D VVDLERQGQGQ+VTCSG +K+GSLR
Sbjct: 321 GDSQLVKLNLQPDTKGSYVEVLERYVNLGPIVDFCVVDLERQGQGQVVTCSGAYKDGSLR 380
Query: 200 IIRNGIGIEEHACIDLPGIKGIWALSIGSPKNLDNTLVLSFVGHTRVLTLS-GAEVEETE 258
I+RNGIGI E A ++L GIKG+W+L + D LV+SF+ TRVL ++ E+EETE
Sbjct: 381 IVRNGIGINEQASVELQGIKGMWSLRSATDDPYDTFLVVSFISETRVLAMNLEDELEETE 440
Query: 259 MGGFTSDQQTFYCGNVDPRTVLQVTPSAAILISTESKARVSSWEPPNGKSISVVSCNKNQ 318
+ GF S QT +C + ++QVT ++ L+S+ S+ + W P G S++V + N Q
Sbjct: 441 IEGFNSQVQTLFCHDAVYNQLVQVTSNSVRLVSSTSRDLKNEWFAPVGYSVNVATANATQ 500
Query: 319 VLCATGC-DVYYLEVHGSEIKQLAHRALEYEVACLDISPLSNEETSSEPAKAQLAAVGLW 377
VL ATG + YLE+ + ++ + L+Y+++CLDI+P+ P + +AAVG+W
Sbjct: 501 VLLATGGGHLVYLEIGDGVLNEVKYAKLDYDISCLDINPIG-----ENPNYSNIAAVGMW 555
Query: 378 TDISARLLSLPSLEEVCKEPLGGEIIPRSILMTCFEGHCYLLVALGDGSMFYFSLDPASG 437
TDIS R+ SLP L + KE LGGEIIPRS+LM FEG YLL ALGDG + F L ++G
Sbjct: 556 TDISVRIYSLPDLNLITKEQLGGEIIPRSVLMCSFEGISYLLCALGDGHLLNFVLSMSTG 615
Query: 438 RLTDKKKVTLGTQPTVLKTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLRQVNHMCS 497
LTD+KKV+LGTQP L+TF S TT+VFA SDRPTVIYSSN KL++SNVNL++V+HMC
Sbjct: 616 ELTDRKKVSLGTQPITLRTFSSKDTTHVFAASDRPTVIYSSNKKLLYSNVNLKEVSHMCP 675
Query: 498 LNAESYPDSLALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRID 557
N ++PDSLA+A + T GTIDEIQKLHIR++PLGE RRI++QE ++TF + + +
Sbjct: 676 FNVAAFPDSLAIAKEGELTIGTIDEIQKLHIRSIPLGEHARRISHQEQTRTFALCSVKYT 735
Query: 558 IQEAD 562
AD
Sbjct: 736 QSNAD 740
Score = 274 bits (700), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 138/302 (45%), Positives = 210/302 (69%), Gaps = 13/302 (4%)
Query: 688 DLNLVVAKNNRIEIHTVTPEGLRPVKEIFLYGKIAVMKFFRGPTDKKDLLFIITQRYNAM 747
+LNL++AK RIEIH +TP+GL+P+ ++ +YG+IA ++ FR + +DLLFI T+RY
Sbjct: 29 ELNLIIAKCTRIEIHLLTPQGLQPMLDVPIYGRIATLELFRPHGETQDLLFIATERYKFC 88
Query: 748 ILECRGDIDNLEILTKAHGNVSDRIGKPSENGIIAIIDPEARVIGLRLYNGLFKIIPLEK 807
+L+ D + E++T+A G+VSDRIG+P++NG I IIDP+ R+IGL LY+GLFK+IP +
Sbjct: 89 VLQW--DTEASEVITRAMGDVSDRIGRPTDNGQIGIIDPDCRLIGLHLYDGLFKVIPFDN 146
Query: 808 DNFELKASSIRMEELEIQDVQFLHGCQNPTIICIHQD-VNGRHVKTHEISLKEKEFTKTP 866
+A +IR+EEL++ D++FL+GC PTI+ ++QD + RHVKT+E+SLK+K+F + P
Sbjct: 147 KGQLKEAFNIRLEELQVLDIKFLYGCPKPTIVVLYQDNKDARHVKTYEVSLKDKDFIEGP 206
Query: 867 WKQDNIEMEASLVIPVPEPLGGAIIIGQESILYHSGKSYVAVAPQIIKSSTIVCYAKVDA 926
W Q+N++ ASL+IPVP PL G +IIG+E+I+Y S ++ A+ I+ S Y +VDA
Sbjct: 207 WAQNNLDNGASLLIPVPPPLCGVLIIGEETIVYCSASAFKAIP---IRPSITRAYGRVDA 263
Query: 927 NGERYLLGDLAGRLFMLLLEKE-EKMDGTFSVKEPKVELLGEHCKGPVVEMSSLSYIKPG 985
+G RYLLGD G L +L++ E EK+ G K+ELLGE + +++ G
Sbjct: 264 DGSRYLLGDHNGLLHLLVITHEKEKVTGL------KIELLGETSIASTISYLDNAFVFIG 317
Query: 986 ST 987
S+
Sbjct: 318 SS 319
Score = 243 bits (621), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 114/233 (48%), Positives = 166/233 (71%), Gaps = 12/233 (5%)
Query: 989 QSTANQPADFNMEVEVHNLLIIDQNTFEILHAHQLFPGEYALSLISSKFGEDPNTYFVLG 1048
QS A+ P E+H + ++D TFE + + L EY S++S F +D N Y+ +G
Sbjct: 736 QSNADDP-------EMHFVRLLDDQTFEFISTYPLDQFEYGCSILSCSFSDDSNVYYCIG 788
Query: 1049 TAVVHPEENEPKQGRIIIFHYDDGKLQQIAEKEIKGACYSMCEFNGKLLASINSTVRLFE 1108
TA V PEENEP +GRI++F +DGKLQ IAEKE KGA YS+ FNGKLLA+IN ++L++
Sbjct: 789 TAYVMPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAFNGKLLAAINQKIQLYK 848
Query: 1109 WTNE-----KELRLECSHFNNIIALFLKVKGDFILVGDLMRSLTLLQYKTMEGSFEEISR 1163
W + +EL+ EC H +I+AL+++ +GDFI+VGDLM+S++LL +K EG+ EE +R
Sbjct: 849 WASREDGGSRELQTECGHHGHILALYVQTRGDFIVVGDLMKSISLLIFKHEEGAIEERAR 908
Query: 1164 DYNPNWMTSIEILDDELFLGAENSYNLFICQKDSAATSDEDRTHLQEVGTVHL 1216
DYN NWM+++EILDD+++LGAEN++NLF +K+S +DE+R+ L+ VG HL
Sbjct: 909 DYNANWMSAVEILDDDIYLGAENNFNLFTVRKNSEGATDEERSRLEVVGEYHL 961
Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 29/56 (51%), Positives = 40/56 (71%)
Query: 1 EGSLRIIRNGIGIEEHACIDLPGIKGIWALSIGSPKNLDNTLVLSFVGHTRVLTLS 56
+GSLRI+RNGIGI E A ++L GIKG+W+L + D LV+SF+ TRVL ++
Sbjct: 376 DGSLRIVRNGIGINEQASVELQGIKGMWSLRSATDDPYDTFLVVSFISETRVLAMN 431
>sp|Q6E7D1|DDB1_SOLCE DNA damage-binding protein 1 OS=Solanum cheesmanii GN=DDB1 PE=3
SV=1
Length = 1095
Score = 486 bits (1251), Expect = e-136, Method: Compositional matrix adjust.
Identities = 252/485 (51%), Positives = 335/485 (69%), Gaps = 14/485 (2%)
Query: 81 RYLLGDLAGRLFMLLLEKE-EKMDGTFSVKEPKVELLGEISIPECLTYLDNGVVFVGSRL 139
RYLLGD G L +L++ E EK+ G K+ELLGE SI ++YLDN VF+GS
Sbjct: 272 RYLLGDHNGLLHLLVITHEKEKVTGL------KIELLGETSIASTISYLDNAFVFIGSSY 325
Query: 140 GDSQLVKLNRSPDENGTYVSVMESFTNLAPIIDMVVVDLERQGQGQLVTCSGGFKEGSLR 199
GDSQLVKLN PD G+YV V+E + NL PI+D VVDLERQGQGQ+VTCSG +K+GSLR
Sbjct: 326 GDSQLVKLNLQPDTKGSYVEVLERYVNLGPIVDFCVVDLERQGQGQVVTCSGAYKDGSLR 385
Query: 200 IIRNGIGIEEHACIDLPGIKGIWALSIGSPKNLDNTLVLSFVGHTRVLTLS-GAEVEETE 258
I+RNGIGI E A ++L GIKG+W+L + D LV+SF+ TRVL ++ E+EETE
Sbjct: 386 IVRNGIGINEQASVELQGIKGMWSLRSATDDPYDTFLVVSFISETRVLAMNLEDELEETE 445
Query: 259 MGGFTSDQQTFYCGNVDPRTVLQVTPSAAILISTESKARVSSWEPPNGKSISVVSCNKNQ 318
+ GF S QT +C + ++QVT ++ L+S+ S+ + W P G S++V + N Q
Sbjct: 446 IEGFNSQVQTLFCHDAVYNQLVQVTSNSVRLVSSTSRDLKNEWFAPVGYSVNVATANATQ 505
Query: 319 VLCATGC-DVYYLEVHGSEIKQLAHRALEYEVACLDISPLSNEETSSEPAKAQLAAVGLW 377
VL ATG + YLE+ + ++ + L+Y+++CLDI+P+ P + +AAVG+W
Sbjct: 506 VLLATGGGHLVYLEIGDGVLNEVKYAKLDYDISCLDINPIG-----ENPNYSNIAAVGMW 560
Query: 378 TDISARLLSLPSLEEVCKEPLGGEIIPRSILMTCFEGHCYLLVALGDGSMFYFSLDPASG 437
TDIS R+ SLP L + KE LGGEIIPRS+LM FEG YLL ALGDG + F L ++G
Sbjct: 561 TDISVRIYSLPDLNLITKEQLGGEIIPRSVLMCSFEGISYLLCALGDGHLLNFVLSMSTG 620
Query: 438 RLTDKKKVTLGTQPTVLKTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLRQVNHMCS 497
LTD+KKV+LGTQP L+TF S TT+VFA SDRPTVIYSSN KL++SNVNL++V+HMC
Sbjct: 621 ELTDRKKVSLGTQPITLRTFSSKDTTHVFAASDRPTVIYSSNKKLLYSNVNLKEVSHMCP 680
Query: 498 LNAESYPDSLALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRID 557
N ++PDSLA+A + T GTIDEIQKLHIR++PLGE RRI++QE ++TF + + +
Sbjct: 681 FNVAAFPDSLAIAKEGELTIGTIDEIQKLHIRSIPLGEHARRISHQEQTRTFALCSVKYT 740
Query: 558 IQEAD 562
AD
Sbjct: 741 QSNAD 745
Score = 268 bits (684), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 138/307 (44%), Positives = 210/307 (68%), Gaps = 18/307 (5%)
Query: 688 DLNLVVAKNNRIEIHTVTPEGLR-----PVKEIFLYGKIAVMKFFRGPTDKKDLLFIITQ 742
+LNL++AK RIEIH +TP+GL+ P+ ++ +YG+IA ++ FR + +DLLFI T+
Sbjct: 29 ELNLIIAKCTRIEIHLLTPQGLQCICLQPMLDVPIYGRIATLELFRPHGETQDLLFIATE 88
Query: 743 RYNAMILECRGDIDNLEILTKAHGNVSDRIGKPSENGIIAIIDPEARVIGLRLYNGLFKI 802
RY +L+ D + E++T+A G+VSDRIG+P++NG I IIDP+ R+IGL LY+GLFK+
Sbjct: 89 RYKFCVLQW--DTEASEVITRAMGDVSDRIGRPTDNGQIGIIDPDCRLIGLHLYDGLFKV 146
Query: 803 IPLEKDNFELKASSIRMEELEIQDVQFLHGCQNPTIICIHQD-VNGRHVKTHEISLKEKE 861
IP + +A +IR+EEL++ D++FL+GC PTI+ ++QD + RHVKT+E+SLK+K+
Sbjct: 147 IPFDNKGQLKEAFNIRLEELQVLDIKFLYGCPKPTIVVLYQDNKDARHVKTYEVSLKDKD 206
Query: 862 FTKTPWKQDNIEMEASLVIPVPEPLGGAIIIGQESILYHSGKSYVAVAPQIIKSSTIVCY 921
F + PW Q+N++ ASL+IPVP PL G +IIG+E+I+Y S ++ A+ I+ S Y
Sbjct: 207 FIEGPWAQNNLDNGASLLIPVPPPLCGVLIIGEETIVYCSASAFKAIP---IRPSITRAY 263
Query: 922 AKVDANGERYLLGDLAGRLFMLLLEKE-EKMDGTFSVKEPKVELLGEHCKGPVVEMSSLS 980
+VDA+G RYLLGD G L +L++ E EK+ G K+ELLGE + +
Sbjct: 264 GRVDADGSRYLLGDHNGLLHLLVITHEKEKVTGL------KIELLGETSIASTISYLDNA 317
Query: 981 YIKPGST 987
++ GS+
Sbjct: 318 FVFIGSS 324
Score = 243 bits (621), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 114/233 (48%), Positives = 166/233 (71%), Gaps = 12/233 (5%)
Query: 989 QSTANQPADFNMEVEVHNLLIIDQNTFEILHAHQLFPGEYALSLISSKFGEDPNTYFVLG 1048
QS A+ P E+H + ++D TFE + + L EY S++S F +D N Y+ +G
Sbjct: 741 QSNADDP-------EMHFVRLLDDQTFEFISTYPLDQFEYGCSILSCSFSDDSNVYYCIG 793
Query: 1049 TAVVHPEENEPKQGRIIIFHYDDGKLQQIAEKEIKGACYSMCEFNGKLLASINSTVRLFE 1108
TA V PEENEP +GRI++F +DGKLQ IAEKE KGA YS+ FNGKLLA+IN ++L++
Sbjct: 794 TAYVMPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAFNGKLLAAINQKIQLYK 853
Query: 1109 WTNE-----KELRLECSHFNNIIALFLKVKGDFILVGDLMRSLTLLQYKTMEGSFEEISR 1163
W + +EL+ EC H +I+AL+++ +GDFI+VGDLM+S++LL +K EG+ EE +R
Sbjct: 854 WASREDGGSRELQTECGHHGHILALYVQTRGDFIVVGDLMKSISLLIFKHEEGAIEERAR 913
Query: 1164 DYNPNWMTSIEILDDELFLGAENSYNLFICQKDSAATSDEDRTHLQEVGTVHL 1216
DYN NWM+++EILDD+++LGAEN++NLF +K+S +DE+R+ L+ VG HL
Sbjct: 914 DYNANWMSAVEILDDDIYLGAENNFNLFTVRKNSEGATDEERSRLEVVGEYHL 966
Score = 64.7 bits (156), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 29/56 (51%), Positives = 40/56 (71%)
Query: 1 EGSLRIIRNGIGIEEHACIDLPGIKGIWALSIGSPKNLDNTLVLSFVGHTRVLTLS 56
+GSLRI+RNGIGI E A ++L GIKG+W+L + D LV+SF+ TRVL ++
Sbjct: 381 DGSLRIVRNGIGINEQASVELQGIKGMWSLRSATDDPYDTFLVVSFISETRVLAMN 436
>sp|B0M0P5|DDB1_DICDI DNA damage-binding protein 1 OS=Dictyostelium discoideum GN=repE
PE=1 SV=1
Length = 1181
Score = 421 bits (1081), Expect = e-116, Method: Compositional matrix adjust.
Identities = 227/501 (45%), Positives = 323/501 (64%), Gaps = 35/501 (6%)
Query: 81 RYLLGDLAGRLFMLLLEKEEKMDGTFSVKEPKVELLGEISIPECLTYLDNGVVFVGSRLG 140
R+L GD GRL +L+L +++ V E K E LG ISIP ++YLD+GVV++GS G
Sbjct: 305 RFLFGDHFGRLSVLVLIHQQQ-----KVMELKFEQLGRISIPSSISYLDSGVVYIGSSSG 359
Query: 141 DSQLVKLNRSPDEN-GTYVSVMESFTNLAPIIDMVVVDLERQGQGQLVTCSGGFKEGSLR 199
DSQL++LN D+ +YV+ +E+FTN+ P++D VVD E+QGQ Q+VTCSG +++GSLR
Sbjct: 360 DSQLIRLNTEKDQTTDSYVTYLEAFTNIGPVVDFCVVDAEKQGQAQIVTCSGTYRDGSLR 419
Query: 200 IIRNGIGIEEHACIDLPGIKGIWAL---------------------SIGSPKNLDNTLVL 238
IIRNGIGI E A I+L GIKGI+ + S G + D L+
Sbjct: 420 IIRNGIGIAEQASIELEGIKGIFPINNNNNNNNNNNNNNNNNNNNNSNGITDSKDRYLIT 479
Query: 239 SFVGHTRVLTLSGAEVEETEMGGFTSDQQTFYCGNVDPRTVL-QVTPSAAILISTESKAR 297
SF+ T+VL+ G E+EETE G S+ T YCG +D +L Q+T + LI + + R
Sbjct: 480 SFIECTKVLSFQGEEIEETEFEGLESNCSTLYCGTIDKLNLLIQITNVSINLIDSNTFKR 539
Query: 298 VSSWEPPNGKSISVVSCNKNQVLCATGCDVYYLEVHGS--EIKQLAHRALEYEVACLDIS 355
VS W + I++VS N++Q++ + + Y +++ S I+ + L +E++C+DIS
Sbjct: 540 VSQWNVEPSRRINLVSTNQDQIVLSIDKSLLYFQINSSNKSIQLVKEIELPHEISCIDIS 599
Query: 356 PLSNEETSSEPAKAQLAAVGLWTDISARLLSLPSLEEVCKEPLGGEIIPRSILMTCFEGH 415
P S K+QL +VGLW DI+ R+ LP+LEE+ KEPLGGEI+PRSILM F+
Sbjct: 600 PFD----SFMDTKSQLVSVGLWNDITLRIFKLPTLEEIWKEPLGGEILPRSILMISFDSI 655
Query: 416 CYLLVALGDGSMFYFSLDPASGRLTDKKKVTLGTQPTVLKTFRSLSTTNVFACSDRPTVI 475
Y+ +LGDG +F F D +S +L DK+K+TLGTQP +LK F+ +T N+FA SDRPTVI
Sbjct: 656 DYIFCSLGDGHLFKFQFDFSSFKLFDKRKLTLGTQPIILKKFKLKNTINIFAISDRPTVI 715
Query: 476 YSSNHKLVFSNVNLRQVNHMCSLNAESYPDSLALATDSTFTFGTIDEIQKLHIRTVPLG- 534
YS N KL +S VNL+ V ++ S N++ +P+S+A+AT ++ T GTIDEIQKLHI+T+PL
Sbjct: 716 YSHNKKLFYSVVNLKDVTNVTSFNSDGFPNSMAIATTNSLTIGTIDEIQKLHIKTIPLNE 775
Query: 535 EAPRRIAYQESSQTFGVITTR 555
E RRI + E + VIT +
Sbjct: 776 EMGRRIVHLEDHSCYAVITVK 796
Score = 188 bits (477), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 117/359 (32%), Positives = 187/359 (52%), Gaps = 73/359 (20%)
Query: 670 FRGPTDKKDLLFIITQRTDLNLVVAKNNRIEIHTVTPEGLRPVKEIFLYGKIAVMKFFRG 729
F GP DK NL+++K +IEI + +GL+P+ ++ +YG+I+V+K F
Sbjct: 22 FTGPNDK-------------NLIISKCTKIEIFLMDQDGLKPMFDVNIYGRISVLKLFSV 68
Query: 730 PTDKKDLLFIITQRYNAMILECRGDIDNLEILTKAHGNVSDRIGKPSENGIIAIIDPEAR 789
K+D LFI T+ + IL D + EI+TKA GN D IG+P+E G + IIDP+ R
Sbjct: 69 AGSKQDYLFISTESFKFCILAY--DYEKKEIITKASGNAEDTIGRPTEAGQLGIIDPDGR 126
Query: 790 VIGLRLYNGLFKIIPLEKDN---------------------------------------- 809
++ L LY GL K+I L+ +N
Sbjct: 127 IVALHLYEGLLKLITLDNNNTPNKINNNNNNNNNNNNNNNNNNNNNINNNNFNINNNNNN 186
Query: 810 --FELKASSIRMEELEIQDVQFLHGCQNPTIICIHQDV-NGRHVKTHEISLKEKEFTKTP 866
+ +++R+EEL++ D+ FL+GC+ PTI + +D + +H+ T+EIS K+ E P
Sbjct: 187 SPIQKNVNNVRLEELQVLDMTFLYGCKVPTIAVLFKDTKDEKHISTYEISSKDTELVVGP 246
Query: 867 WKQDNIEMEASLVIPVPEPLGGAIIIGQESILYHSGKSYVAVAPQIIKSSTIVCYAKVDA 926
W Q N+ + +SL++PV PLGG +++ I Y +GK +VA + + + + +VD
Sbjct: 247 WSQSNVGVYSSLLVPV--PLGGVLVVADNGITYLNGKVTRSVA---VSYTKFLAFTRVDK 301
Query: 927 NGERYLLGDLAGRLFMLLLEKEEKMDGTFSVKEPKVELLGEHCKGPVVEMSSLSYIKPG 985
+G R+L GD GRL +L+L +++ V E K E LG + SS+SY+ G
Sbjct: 302 DGSRFLFGDHFGRLSVLVLIHQQQ-----KVMELKFEQLGR-----ISIPSSISYLDSG 350
Score = 115 bits (289), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 73/243 (30%), Positives = 134/243 (55%), Gaps = 33/243 (13%)
Query: 1003 EVHNLLIIDQNTFEILHAHQLFPGEYALSLISSKF-GEDPNTYFVLGTAVVHPEENEPKQ 1061
EV + I + TFE++ +++L P E S+ KF G+D NTY +GT++ P ++
Sbjct: 814 EVSYIRIYNDQTFELISSYKLDPYEMGWSITPCKFAGDDVNTYLAVGTSINTPIKS---S 870
Query: 1062 GRIIIFHYD-----------------------DGKLQQIAEKEIKGACYSMCEFNGKLLA 1098
GR+++F +GKL + E + + + Y + FNG+L+A
Sbjct: 871 GRVLLFSLSSSSSSNDKDSLDNNNNNNNNSGANGKLTLLEEIKFRSSVYFLLSFNGRLIA 930
Query: 1099 SINSTVRLFEWTNEKE-----LRLECSHFNNIIALFLKVKGDFILVGDLMRSLTLLQYKT 1153
+++ + +T+ KE + E H + + L L +G FILVGD+M+S++LL ++
Sbjct: 931 AVHKRLFSIRYTHSKEKNCKVISSESVHKGHTMILKLASRGHFILVGDMMKSMSLLVEQS 990
Query: 1154 MEGSFEEISRDYNPNWMTSIEILDDELFLGAENSYNLFICQKDSAATSDEDRTHLQEVGT 1213
+GS E+I+R+ P W+ S+ +++D+ F+GAE S N + +K++ +T++ +R L VG
Sbjct: 991 -DGSLEQIARNPQPIWIRSVAMINDDYFIGAEASNNFIVVKKNNDSTNELERELLDSVGH 1049
Query: 1214 VHL 1216
H+
Sbjct: 1050 YHI 1052
Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 47/79 (59%)
Query: 625 NFTSSTDLNLVVAKNNRIEIHTVTPEGLRPVKEIFLYGKIAVMKFFRGPTDKKDLLFIIT 684
NFT D NL+++K +IEI + +GL+P+ ++ +YG+I+V+K F K+D LFI T
Sbjct: 21 NFTGPNDKNLIISKCTKIEIFLMDQDGLKPMFDVNIYGRISVLKLFSVAGSKQDYLFIST 80
Query: 685 QRTDLNLVVAKNNRIEIHT 703
+ ++ + EI T
Sbjct: 81 ESFKFCILAYDYEKKEIIT 99
Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 40/78 (51%), Gaps = 21/78 (26%)
Query: 1 EGSLRIIRNGIGIEEHACIDLPGIKGIWAL---------------------SIGSPKNLD 39
+GSLRIIRNGIGI E A I+L GIKGI+ + S G + D
Sbjct: 415 DGSLRIIRNGIGIAEQASIELEGIKGIFPINNNNNNNNNNNNNNNNNNNNNSNGITDSKD 474
Query: 40 NTLVLSFVGHTRVLTLSG 57
L+ SF+ T+VL+ G
Sbjct: 475 RYLITSFIECTKVLSFQG 492
>sp|Q21554|DDB1_CAEEL DNA damage-binding protein 1 OS=Caenorhabditis elegans GN=ddb-1
PE=1 SV=2
Length = 1134
Score = 387 bits (995), Expect = e-106, Method: Compositional matrix adjust.
Identities = 222/555 (40%), Positives = 331/555 (59%), Gaps = 40/555 (7%)
Query: 80 ERYLLGDLAGRLFMLLLEKEEKMDGTFSVKEPKVELLGEISIPECLTYLDNGVVFVGSRL 139
ER+LL D GRL MLLL E G ++VKE +++ LGE SI + + Y+DNGVVFVGSRL
Sbjct: 267 ERFLLSDTDGRLLMLLLNVTESQSG-YTVKEMRIDYLGETSIADSINYIDNGVVFVGSRL 325
Query: 140 GDSQLVKLNRSPDENGTYVSVMESFTNLAPIIDMVVVDLERQGQGQLVTCSGGFKEGSLR 199
GDSQL++L P+ G+Y ++E+++N+ PI DMV+V E GQ QLVTC+G K+GSLR
Sbjct: 326 GDSQLIRLMTEPN-GGSYSVILETYSNIGPIRDMVMV--ESDGQPQLVTCTGADKDGSLR 382
Query: 200 IIRNGIGIEEHACIDLPGIKGIWALSIGSPKNLDNTLVLSFVGHTRVLTLSGAEVEETEM 259
+IRNGIGI+E A +DL G+ GI+ + + S N DN +++S T VL ++G E+E+ ++
Sbjct: 383 VIRNGIGIDELASVDLAGVVGIFPIRLDS--NADNYVIVSLSDETHVLQITGEELEDVKL 440
Query: 260 GGFTSDQQTFYC----GNVDPRTVLQVTPSAAILISTESKARVSSWEPPNGKSISVVSCN 315
+D T + G D +LQ T L+S+ ++ WEP NG+ IS VS N
Sbjct: 441 LEINTDLPTIFASTLFGPNDSGIILQATEKQIRLMSSSGLSKF--WEPTNGEIISKVSVN 498
Query: 316 --KNQVLCATGCDVYYL-----EVHGSEIKQLAHRALEYEVACLDISPLSNEETSSEPAK 368
Q++ A VY L E+ +I+ A + E E+ACLD+S E K
Sbjct: 499 AANGQIVLAARDTVYLLTCIVDEMGALDIQLTAEKKFENEIACLDLS----NEGDDPNNK 554
Query: 369 AQLAAVGLWTDISARLLSLPSLEEVCKEPLGGEIIPRSILMTCFEGHCYLLVALGDGSMF 428
A + W+ + ++ LP L VC L +IIPRSI+ TC E YLLVA GDG++
Sbjct: 555 ATFLVLAFWSTFAMEVIQLPDLITVCHTDLPTKIIPRSIIATCIEEVHYLLVAFGDGALV 614
Query: 429 YFSLDPASGRLTDKKKVTLGTQPTVLKTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVN 488
Y+ D +G + KK +GT+P L R+ + ++F CSDRP +I+S++ KLVFSNVN
Sbjct: 615 YYVFDIKTGTHGEPKKSNVGTRPPSLHRVRNKNRQHLFVCSDRPVIIFSASKKLVFSNVN 674
Query: 489 LRQVNHMCSLNAESYPDSLALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQT 548
++ V+ +CSL++ +Y D L ++ ++ FGT+D+IQK+H+R++P+GE+ RIAYQ+S+ T
Sbjct: 675 VKLVDTVCSLSSSAYRDCLVISDGNSMVFGTVDDIQKIHVRSIPMGESVLRIAYQKSTST 734
Query: 549 FGVITTRIDIQEADGSTPVRPSASTQAQNTTSSTISSLSYIKPGSTKQSTANQPADFNME 608
+GV + R + S R AS A ++S S K ST+ P +
Sbjct: 735 YGVCSNRTE------SKAERVFASKNA------LVTSQSRPKVASTRADMDESPPN---- 778
Query: 609 VEVHNLLIIDQNTFE 623
+ +++DQNTF+
Sbjct: 779 -TTSSFMVLDQNTFQ 792
Score = 208 bits (530), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 103/245 (42%), Positives = 160/245 (65%), Gaps = 9/245 (3%)
Query: 976 MSSLSYIKPGSTKQSTANQPADFNMEVEVHNLLIIDQNTFEILHAHQLFPGEYALSLISS 1035
++S S K ST+ P + + +++DQNTF++LH+H+ P E ALS IS
Sbjct: 757 VTSQSRPKVASTRADMDESPPN-----TTSSFMVLDQNTFQVLHSHEFGPWETALSCISG 811
Query: 1036 KFGEDPNTYFVLGTAVVHPEENEPKQGRIIIFHYDD---GKLQQIAEKEIKGACYSMCEF 1092
+F D +TY+V+GT +++P+E E K GRI++F DD KL+++ E ++G+ ++
Sbjct: 812 QFTNDSSTYYVVGTGLIYPDETETKIGRIVVFEVDDVERSKLRRVHELVVRGSPLAIRIL 871
Query: 1093 NGKLLASINSTVRLFEWTNEKELRLECSHFNNIIALFLKVKGDFILVGDLMRSLTLLQYK 1152
NGKL+A+INS++RLFEWT +KELRLECS FN++IAL LKV + + V D+MRS++LL Y+
Sbjct: 872 NGKLVAAINSSIRLFEWTTDKELRLECSSFNHVIALDLKVMNEEVAVADVMRSVSLLSYR 931
Query: 1153 TMEGSFEEISRDYNPNWMTSIEILDDELFLGAENSYNLFICQKD-SAATSDEDRTHLQEV 1211
+EG+FEE+++D+N WM + E + E LG E NLF + D + +D+ R L+
Sbjct: 932 MLEGNFEEVAKDWNSQWMVTCEFITAESILGGEAHLNLFTVEVDKTRPITDDGRYVLEPT 991
Query: 1212 GTVHL 1216
G +L
Sbjct: 992 GYWYL 996
Score = 165 bits (418), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 95/307 (30%), Positives = 180/307 (58%), Gaps = 18/307 (5%)
Query: 684 TQRTDLNLVVAKNNRIEIHTVTPEGLRPVKEIFLYGKIAVMKFFRGPTDKKDLLFIITQR 743
T ++NL+VA+ NRI++ V+PEGL+ V EI +YG++ + + DK+ L ++T++
Sbjct: 24 TGHENVNLIVARGNRIDVQLVSPEGLKNVCEIPIYGQVLTIALVKCKRDKRHSLIVVTEK 83
Query: 744 YNAMILECRGDIDNLEILTKAHGNVSDRIGKPSENGIIAIIDPEARVIGLRLYNGLFKII 803
++ IL R + +++T+A G ++D G+ ++N + ++ +I +R + G K+I
Sbjct: 84 WHMAILAYR----DGKVVTRAAGCIADPTGRATDN-LFSLTIHRNGLIAIRAFEGSVKMI 138
Query: 804 PLEKDNFELKASSIRMEELEIQDVQFLHGCQNPT--IICIHQDVNGRHVKTHEISLKEKE 861
E +L+ ++R + + D +F+ ++ + I+ D +G+H++ ++++ +KE
Sbjct: 139 QWESGT-DLRHFNVRFDYPNVSDFKFVDTGEDDVYRVAFIYDDDHGKHLQFSDLNMHDKE 197
Query: 862 FTKTPWKQDNIEMEASLVIPVPEPLGGAIIIGQESILYHSGKSYVAVAP---QIIKSSTI 918
F +T +Q +I ++S++IPVP +GG I++G S+LY + V P +++++T
Sbjct: 198 F-RTYSRQASIAADSSVLIPVPHAIGGVIVLGSNSVLYKPNDNLGEVVPYTCSLLENTTF 256
Query: 919 VCYAKVDANGERYLLGDLAGRLFMLLLEKEEKMDGTFSVKEPKVELLGEHCKGPVVEMSS 978
C+ VDA+GER+LL D GRL MLLL E G ++VKE +++ LGE S
Sbjct: 257 TCHGIVDASGERFLLSDTDGRLLMLLLNVTESQSG-YTVKEMRIDYLGETSIA-----DS 310
Query: 979 LSYIKPG 985
++YI G
Sbjct: 311 INYIDNG 317
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 41/59 (69%), Gaps = 2/59 (3%)
Query: 1 EGSLRIIRNGIGIEEHACIDLPGIKGIWALSIGSPKNLDNTLVLSFVGHTRVLTLSGAE 59
+GSLR+IRNGIGI+E A +DL G+ GI+ + + S N DN +++S T VL ++G E
Sbjct: 378 DGSLRVIRNGIGIDELASVDLAGVVGIFPIRLDS--NADNYVIVSLSDETHVLQITGEE 434
>sp|O13807|DDB1_SCHPO DNA damage-binding protein 1 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=ddb1 PE=1 SV=1
Length = 1072
Score = 140 bits (352), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 129/468 (27%), Positives = 218/468 (46%), Gaps = 40/468 (8%)
Query: 79 SERYLLGDLAGRLFMLLLEKEEKMDGTFSVKEPKVELLGEISIPECLTYLDNGVVFVGSR 138
S Y++ D +G L+ K D T S++ +E LGE SI CL L + +FVGS
Sbjct: 276 SSIYIVADESGMLYKF---KALFTDETVSME---LEKLGESSIASCLIALPDNHLFVGSH 329
Query: 139 LGDSQLVKLNRSPDENGTYVSVMESFTNLAPIIDMVVVDLERQGQGQLVTCSGGFKEGSL 198
+S L++L S +N + ++++F N+API D ++ D Q ++TCSG +K+G+L
Sbjct: 330 FNNSVLLQL-PSITKNNHKLEILQNFVNIAPISDFIIDD--DQTGSSIITCSGAYKDGTL 386
Query: 199 RIIRNGIGIEEHACIDLPGIKGIWALSIGSPKNLDNTLVLSFVGHTRVLTLSGAEVEETE 258
RIIRN I IE A I++ GIK +++S + N DN + LS + TR + +S V
Sbjct: 387 RIIRNSINIENVALIEMEGIKDFFSVSFRA--NYDNYIFLSLICETRAIIVSPEGVFSAN 444
Query: 259 MGGFTSDQQTFYCGNVDPRTVLQVTPSAAILISTESKARVSSWEPPNGKSISVVSCNKNQ 318
+ F +LQ+T L + ++ SW P SI+ S +
Sbjct: 445 HDLSCEESTIFVSTIYGNSQILQITTKEIRLFDGK---KLHSWISP--MSITCGSSFADN 499
Query: 319 VLCAT-GCDVYYLEVHGSEIKQLAHRALEYEVACLDISPLSNEETSSEPAKAQLAAVGLW 377
V A G + + E I ++ + EV+ L + + + VGLW
Sbjct: 500 VCVAVAGGLILFFE----GITEVGRYQCDTEVSSLCFT------------EENVVYVGLW 543
Query: 378 TDISARLLSLPSLEE--VCKEPLGGEIIPRSILMTCFEGH--CYLLVALGDGSMFYFSLD 433
SA ++ L ++ L IPRSI+ + G L V+ +G + F+
Sbjct: 544 ---SADIIMLTYCQDGISLTHSLKLTDIPRSIVYSQKYGDDGGTLYVSTNNGYVLMFNFQ 600
Query: 434 PASGRLTDKKKVTLGTQPTVLKTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLRQVN 493
++ LG P +LK F S +FA ++P ++Y + KLV + ++ ++
Sbjct: 601 NGQVIEHSLRRNQLGVAPIILKHFDSKEKNAIFALGEKPQLMYYESDKLVITPLSCTEML 660
Query: 494 HMCSLNAESYPDSLALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIA 541
++ S S ++ T+S + + EI+ L+++TV + PRRI
Sbjct: 661 NISSYVNPSLGVNMLYCTNSYISLAKMSEIRSLNVQTVSVKGFPRRIC 708
Score = 84.7 bits (208), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 55/211 (26%), Positives = 109/211 (51%), Gaps = 8/211 (3%)
Query: 1007 LLIIDQNTFEILHAHQLFPGEYALSLISSKFGEDPNTYFVLGTAVVHPEENEPKQGRIII 1066
L + ++NT + H+ EY ++ S + + V+GT P+++ P GR+++
Sbjct: 736 LRVYEKNTLSEIAHHKF--NEY--EMVESIILMNDDKRVVVGTGFNFPDQDAPDSGRLMV 791
Query: 1067 FHY-DDGKLQQIAEKEIKGACYSMCEFNGKLLASINSTVRLFEWTNEKELRLECSHFNNI 1125
F D ++ AE +++G+ ++ + ++A IN++V +FE+ + + + S
Sbjct: 792 FEMTSDNNIEMQAEHKVQGSVNTLVLYKHLIVAGINASVCIFEYEH-GTMHVRNSIRTPT 850
Query: 1126 IALFLKVKGDFILVGDLMRSLTLLQYKTMEGSFEEISRDYNPNWMTSIEILDDELFLGAE 1185
+ + V D I+ DLM+S+T+LQ+ ++ E++RDY+P W TS+EIL + + E
Sbjct: 851 YTIDISVNQDEIIAADLMKSITVLQF--IDDQLIEVARDYHPLWATSVEILSERKYFVTE 908
Query: 1186 NSYNLFICQKDSAATSDEDRTHLQEVGTVHL 1216
N I +D+ + DR L+ +L
Sbjct: 909 ADGNAVILLRDNVSPQLSDRKKLRWYKKFYL 939
Score = 79.3 bits (194), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 66/294 (22%), Positives = 134/294 (45%), Gaps = 21/294 (7%)
Query: 664 IAVMKFFRGPTDKKDLLFI-ITQRTDLNLVVAKNNRIEIHTVTPEGLRPVKEIFLYGKIA 722
+ + + P+ ++ +F + N++VAK N +E+++ L + ++ KI
Sbjct: 1 MTYVTYLHKPSSIRNAVFCKFVNASSWNVIVAKVNCLEVYSYENNRLCLITSANIFAKIV 60
Query: 723 VMKFFRGPTDKKDLLFIITQRYNAMILECRGDIDNLEILTKAHGNVSDRIGKPSENGIIA 782
+K F+ + D + + T + L + + + K + S+R + S++G +
Sbjct: 61 NVKAFKPVSSPTDHIIVATDSFRYFTLFWDANDNTVSNGIKIQ-DCSERSLRESQSGPLL 119
Query: 783 IIDPEARVIGLRLYNGLFKIIPLEKDNFELKAS----------SIRMEELEIQDVQFLHG 832
++DP RVI L +Y GL IIP+ K S S+R++EL + D+ L+
Sbjct: 120 LVDPFQRVICLHVYQGLLTIIPIFKSKKRFMTSHNNPSLHDNFSVRIQELNVVDIAMLYN 179
Query: 833 CQNPTIICIHQDVNG-RHVKTHEISLKEKEFTKTPWKQDNIEMEASLVIPVPEPLGGAII 891
P++ +++D H+ T++I+++E+E + +IE E L +P GG +
Sbjct: 180 SSRPSLAVLYKDSKSIVHLSTYKINVREQEIDEDDVVCHDIE-EGKL---IPSENGGVFV 235
Query: 892 IGQESILYHSGKSYVA----VAPQIIKSSTIVCYAKVDANGERYLLGDLAGRLF 941
G+ + Y S V+ P S +I + + Y++ D +G L+
Sbjct: 236 FGEMYVYYISKDIQVSKLLLTYPITAFSPSISNDPETGLDSSIYIVADESGMLY 289
Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 36/56 (64%), Gaps = 2/56 (3%)
Query: 1 EGSLRIIRNGIGIEEHACIDLPGIKGIWALSIGSPKNLDNTLVLSFVGHTRVLTLS 56
+G+LRIIRN I IE A I++ GIK +++S + N DN + LS + TR + +S
Sbjct: 383 DGTLRIIRNSINIENVALIEMEGIKDFFSVSFRA--NYDNYIFLSLICETRAIIVS 436
>sp|Q15393|SF3B3_HUMAN Splicing factor 3B subunit 3 OS=Homo sapiens GN=SF3B3 PE=1 SV=4
Length = 1217
Score = 133 bits (334), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 121/511 (23%), Positives = 213/511 (41%), Gaps = 61/511 (11%)
Query: 89 GRLFMLLLEKEEKMDGTFSVKEPKVELLGEISIPECLTYLDNGVVFVGSRLGDSQLVKLN 148
G +F + LE +E M V E +++ + + + L G +FV S G+ L ++
Sbjct: 308 GDIFKITLETDEDM-----VTEIRLKYFDTVPVAAAMCVLKTGFLFVASEFGNHYLYQIA 362
Query: 149 R--SPDENGTYVSVM---------------------ESFTNLAPIIDMVVVDLERQGQGQ 185
DE + S M + +L+PI+ + DL + Q
Sbjct: 363 HLGDDDEEPEFSSAMPLEEGDTFFFQPRPLKNLVLVDELDSLSPILFCQIADLANEDTPQ 422
Query: 186 LVTCSGGFKEGSLRIIRNGIGIEEHACIDLPG-IKGIWALSIGSPKNLDNTLVLSFVGHT 244
L G SLR++R+G+ + E A +LPG +W + D +++SFV T
Sbjct: 423 LYVACGRGPRSSLRVLRHGLEVSEMAVSELPGNPNAVWTVRRHIEDEFDAYIIVSFVNAT 482
Query: 245 RVLTLSGAEVEETEMGGFTSDQQTFYCGNVDPRTVLQVTPSAAILISTESKARVSSWEPP 304
VL++ G VEE GF T C + ++QV P I + RV+ W+ P
Sbjct: 483 LVLSI-GETVEEVTDSGFLGTTPTLSCSLLGDDALVQVYPDGIRHIRADK--RVNEWKTP 539
Query: 305 NGKSISVVSCNKNQVLCA-TGCDVYYLEVHGS-EIKQLAHRA-LEYEVACLDISPLSNEE 361
K+I + N+ QV+ A TG ++ Y E+ S ++ + R + +V C+ ++ + E
Sbjct: 540 GKKTIVKCAVNQRQVVIALTGGELVYFEMDPSGQLNEYTERKEMSADVVCMSLANVPPGE 599
Query: 362 TSSEPAKAQLAAVGLWTDISARLLSLPSLEEVCKEPLGGEIIPRSILMTCFE-------- 413
+++ AVGL D + R++SL + C +PL + +P C
Sbjct: 600 Q-----RSRFLAVGL-VDNTVRIISLDPSD--CLQPLSMQALPAQPESLCIVEMGGTEKQ 651
Query: 414 ---------GHCYLLVALGDGSMFYFSLDPASGRLTDKKKVTLGTQPTVLKTFRSLSTTN 464
G YL + L +G + LDP +G L+D + LG++P L R
Sbjct: 652 DELGERGSIGFLYLNIGLQNGVLLRTVLDPVTGDLSDTRTRYLGSRPVKLFRVRMQGQEA 711
Query: 465 VFACSDRPTVIYSSNHKLVFSNVNLRQVNHMCSLNAESYPDSLALATDSTFTFGTIDEIQ 524
V A S R + YS + + ++ + +E P+ + + +T ++++
Sbjct: 712 VLAMSSRSWLSYSYQSRFHLTPLSYETLEFASGFASEQCPEGIVAISTNTLRILALEKLG 771
Query: 525 KLHIRTV-PLGEAPRRIAYQESSQTFGVITT 554
+ + PL PR+ S +I T
Sbjct: 772 AVFNQVAFPLQYTPRKFVIHPESNNLIIIET 802
Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/204 (22%), Positives = 91/204 (44%), Gaps = 11/204 (5%)
Query: 1010 IDQNTFEILHAHQLFPGEYALSLISSKFGEDPNTYFVLGTAVVHPEENEPKQGRIIIFHY 1069
I NT +++ Q E A S+ +F ++VL N ++ Y
Sbjct: 872 IQGNTLDLVQLEQ---NEAAFSVAVCRFSNTGEDWYVLVGVAKDLILNPRSVAGGFVYTY 928
Query: 1070 ---DDG-KLQQIAEKEIKGACYSMCEFNGKLLASINSTVRLFEWTNEKELR-LECSHFNN 1124
++G KL+ + + ++ ++ F G++L + +R+++ +K LR E H N
Sbjct: 929 KLVNNGEKLEFLHKTPVEEVPAAIAPFQGRVLIGVGKLLRVYDLGKKKLLRKCENKHIAN 988
Query: 1125 IIALFLKVKGDFILVGDLMRSLTLLQYKTMEGSFEEISRDYNPNWMTSIEILDDELFLGA 1184
I+ ++ G ++V D+ S ++YK E + D P W+T+ +LD + GA
Sbjct: 989 YIS-GIQTIGHRVIVSDVQESFIWVRYKRNENQLIIFADDTYPRWVTTASLLDYDTVAGA 1047
Query: 1185 ENSYNLFICQ--KDSAATSDEDRT 1206
+ N+ + + ++ DED T
Sbjct: 1048 DKFGNICVVRLPPNTNDEVDEDPT 1071
Score = 36.6 bits (83), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 3 SLRIIRNGIGIEEHACIDLPG-IKGIWALSIGSPKNLDNTLVLSFVGHTRVLTL 55
SLR++R+G+ + E A +LPG +W + D +++SFV T VL++
Sbjct: 434 SLRVLRHGLEVSEMAVSELPGNPNAVWTVRRHIEDEFDAYIIVSFVNATLVLSI 487
>sp|A0JN52|SF3B3_BOVIN Splicing factor 3B subunit 3 OS=Bos taurus GN=SF3B3 PE=2 SV=1
Length = 1217
Score = 133 bits (334), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 121/511 (23%), Positives = 213/511 (41%), Gaps = 61/511 (11%)
Query: 89 GRLFMLLLEKEEKMDGTFSVKEPKVELLGEISIPECLTYLDNGVVFVGSRLGDSQLVKLN 148
G +F + LE +E M V E +++ + + + L G +FV S G+ L ++
Sbjct: 308 GDIFKITLETDEDM-----VTEIRLKYFDTVPVAAAMCVLKTGFLFVASEFGNHYLYQIA 362
Query: 149 R--SPDENGTYVSVM---------------------ESFTNLAPIIDMVVVDLERQGQGQ 185
DE + S M + +L+PI+ + DL + Q
Sbjct: 363 HLGDDDEEPEFSSAMPLEEGDTFFFQPRPLKNLVLVDELDSLSPILFCQIADLANEDTPQ 422
Query: 186 LVTCSGGFKEGSLRIIRNGIGIEEHACIDLPG-IKGIWALSIGSPKNLDNTLVLSFVGHT 244
L G SLR++R+G+ + E A +LPG +W + D +++SFV T
Sbjct: 423 LYVACGRGPRSSLRVLRHGLEVSEMAVSELPGNPNAVWTVRRHIEDEFDAYIIVSFVNAT 482
Query: 245 RVLTLSGAEVEETEMGGFTSDQQTFYCGNVDPRTVLQVTPSAAILISTESKARVSSWEPP 304
VL++ G VEE GF T C + ++QV P I + RV+ W+ P
Sbjct: 483 LVLSI-GETVEEVTDSGFLGTTPTLSCSLLGDDALVQVYPDGIRHIRADK--RVNEWKTP 539
Query: 305 NGKSISVVSCNKNQVLCA-TGCDVYYLEVHGS-EIKQLAHRA-LEYEVACLDISPLSNEE 361
K+I + N+ QV+ A TG ++ Y E+ S ++ + R + +V C+ ++ + E
Sbjct: 540 GKKTIVKCAVNQRQVVIALTGGELVYFEMDPSGQLNEYTERKEMSADVVCMSLANVPPGE 599
Query: 362 TSSEPAKAQLAAVGLWTDISARLLSLPSLEEVCKEPLGGEIIPRSILMTCFE-------- 413
+++ AVGL D + R++SL + C +PL + +P C
Sbjct: 600 Q-----RSRFLAVGL-VDNTVRIISLDPSD--CLQPLSMQALPAQPESLCIVEMGGTEKQ 651
Query: 414 ---------GHCYLLVALGDGSMFYFSLDPASGRLTDKKKVTLGTQPTVLKTFRSLSTTN 464
G YL + L +G + LDP +G L+D + LG++P L R
Sbjct: 652 DELGERGSIGFLYLNIGLQNGVLLRTVLDPVTGDLSDTRTRYLGSRPVKLFRVRMQGQEA 711
Query: 465 VFACSDRPTVIYSSNHKLVFSNVNLRQVNHMCSLNAESYPDSLALATDSTFTFGTIDEIQ 524
V A S R + YS + + ++ + +E P+ + + +T ++++
Sbjct: 712 VLAMSSRSWLSYSYQSRFHLTPLSYETLEFASGFASEQCPEGIVAISTNTLRILALEKLG 771
Query: 525 KLHIRTV-PLGEAPRRIAYQESSQTFGVITT 554
+ + PL PR+ S +I T
Sbjct: 772 AVFNQVAFPLQYTPRKFVIHPESNNLIIIET 802
Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/204 (22%), Positives = 91/204 (44%), Gaps = 11/204 (5%)
Query: 1010 IDQNTFEILHAHQLFPGEYALSLISSKFGEDPNTYFVLGTAVVHPEENEPKQGRIIIFHY 1069
I NT +++ Q E A S+ +F ++VL N ++ Y
Sbjct: 872 IQGNTLDLVQLEQ---NEAAFSVAVCRFSNTGEDWYVLVGVAKDLILNPRSVAGGFVYTY 928
Query: 1070 ---DDG-KLQQIAEKEIKGACYSMCEFNGKLLASINSTVRLFEWTNEKELR-LECSHFNN 1124
++G KL+ + + ++ ++ F G++L + +R+++ +K LR E H N
Sbjct: 929 KLVNNGEKLEFLHKTPVEEVPAAIAPFQGRVLIGVGKLLRVYDLGKKKLLRKCENKHIAN 988
Query: 1125 IIALFLKVKGDFILVGDLMRSLTLLQYKTMEGSFEEISRDYNPNWMTSIEILDDELFLGA 1184
I+ ++ G ++V D+ S ++YK E + D P W+T+ +LD + GA
Sbjct: 989 YIS-GIQTIGHRVIVSDVQESFIWVRYKRNENQLIIFADDTYPRWVTTASLLDYDTVAGA 1047
Query: 1185 ENSYNLFICQ--KDSAATSDEDRT 1206
+ N+ + + ++ DED T
Sbjct: 1048 DKFGNICVVRLPPNTNDEVDEDPT 1071
Score = 36.6 bits (83), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 3 SLRIIRNGIGIEEHACIDLPG-IKGIWALSIGSPKNLDNTLVLSFVGHTRVLTL 55
SLR++R+G+ + E A +LPG +W + D +++SFV T VL++
Sbjct: 434 SLRVLRHGLEVSEMAVSELPGNPNAVWTVRRHIEDEFDAYIIVSFVNATLVLSI 487
>sp|Q921M3|SF3B3_MOUSE Splicing factor 3B subunit 3 OS=Mus musculus GN=Sf3b3 PE=2 SV=1
Length = 1217
Score = 132 bits (333), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 121/511 (23%), Positives = 213/511 (41%), Gaps = 61/511 (11%)
Query: 89 GRLFMLLLEKEEKMDGTFSVKEPKVELLGEISIPECLTYLDNGVVFVGSRLGDSQLVKLN 148
G +F + LE +E M V E +++ + + + L G +FV S G+ L ++
Sbjct: 308 GDIFKITLETDEDM-----VTEIRLKYFDTVPVAAAMCVLKTGFLFVASEFGNHYLYQIA 362
Query: 149 R--SPDENGTYVSVM---------------------ESFTNLAPIIDMVVVDLERQGQGQ 185
DE + S M + +L+PI+ + DL + Q
Sbjct: 363 HLGDDDEEPEFSSAMPLEEGDTFFFQPRPLKNLVLVDELDSLSPILFCQIADLANEDTPQ 422
Query: 186 LVTCSGGFKEGSLRIIRNGIGIEEHACIDLPG-IKGIWALSIGSPKNLDNTLVLSFVGHT 244
L G SLR++R+G+ + E A +LPG +W + D +++SFV T
Sbjct: 423 LYVACGRGPRSSLRVLRHGLEVSEMAVSELPGNPNAVWTVRRHIEDEFDAYIIVSFVNAT 482
Query: 245 RVLTLSGAEVEETEMGGFTSDQQTFYCGNVDPRTVLQVTPSAAILISTESKARVSSWEPP 304
VL++ G VEE GF T C + ++QV P I + RV+ W+ P
Sbjct: 483 LVLSI-GETVEEVTDSGFLGTTPTLSCSLLGDDALVQVYPDGIRHIRADK--RVNEWKTP 539
Query: 305 NGKSISVVSCNKNQVLCA-TGCDVYYLEVHGS-EIKQLAHRA-LEYEVACLDISPLSNEE 361
K+I + N+ QV+ A TG ++ Y E+ S ++ + R + +V C+ ++ + E
Sbjct: 540 GKKTIVKCAVNQRQVVIALTGGELVYFEMDPSGQLNEYTERKEMSADVVCMSLANVPPGE 599
Query: 362 TSSEPAKAQLAAVGLWTDISARLLSLPSLEEVCKEPLGGEIIPRSILMTCFE-------- 413
+++ AVGL D + R++SL + C +PL + +P C
Sbjct: 600 Q-----RSRFLAVGL-VDNTVRIISLDPSD--CLQPLSMQALPAQPESLCIVEMGGTEKQ 651
Query: 414 ---------GHCYLLVALGDGSMFYFSLDPASGRLTDKKKVTLGTQPTVLKTFRSLSTTN 464
G YL + L +G + LDP +G L+D + LG++P L R
Sbjct: 652 DELGERGSIGFLYLNIGLQNGVLLRTVLDPVTGDLSDTRTRYLGSRPVKLFRVRMQGQEA 711
Query: 465 VFACSDRPTVIYSSNHKLVFSNVNLRQVNHMCSLNAESYPDSLALATDSTFTFGTIDEIQ 524
V A S R + YS + + ++ + +E P+ + + +T ++++
Sbjct: 712 VLAMSSRSWLSYSYQSRFHLTPLSYETLEFASGFASEQCPEGIVAISTNTLRILALEKLG 771
Query: 525 KLHIRTV-PLGEAPRRIAYQESSQTFGVITT 554
+ + PL PR+ S +I T
Sbjct: 772 AVFNQVAFPLQYTPRKFVIHPESNNLIIIET 802
Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 67/137 (48%), Gaps = 4/137 (2%)
Query: 1073 KLQQIAEKEIKGACYSMCEFNGKLLASINSTVRLFEWTNEKELR-LECSHFNNIIALFLK 1131
KL+ + + ++ ++ F G++L + +R+++ +K LR E H N I+ ++
Sbjct: 936 KLEFLHKTPVEEVPAAIAPFQGRVLIGVGKLLRVYDLGKKKLLRKCENKHIANYIS-GIQ 994
Query: 1132 VKGDFILVGDLMRSLTLLQYKTMEGSFEEISRDYNPNWMTSIEILDDELFLGAENSYNLF 1191
G ++V D+ S ++YK E + D P W+T+ +LD + GA+ N+
Sbjct: 995 TIGHRVIVSDVQESFIWVRYKRNENQLIIFADDTYPRWVTTASLLDYDTVAGADKFGNIC 1054
Query: 1192 ICQ--KDSAATSDEDRT 1206
+ + ++ DED T
Sbjct: 1055 VVRLPPNTNDEVDEDPT 1071
Score = 36.6 bits (83), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 3 SLRIIRNGIGIEEHACIDLPG-IKGIWALSIGSPKNLDNTLVLSFVGHTRVLTL 55
SLR++R+G+ + E A +LPG +W + D +++SFV T VL++
Sbjct: 434 SLRVLRHGLEVSEMAVSELPGNPNAVWTVRRHIEDEFDAYIIVSFVNATLVLSI 487
>sp|Q5RBI5|SF3B3_PONAB Splicing factor 3B subunit 3 OS=Pongo abelii GN=SF3B3 PE=2 SV=1
Length = 1217
Score = 132 bits (333), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 121/511 (23%), Positives = 213/511 (41%), Gaps = 61/511 (11%)
Query: 89 GRLFMLLLEKEEKMDGTFSVKEPKVELLGEISIPECLTYLDNGVVFVGSRLGDSQLVKLN 148
G +F + LE +E M V E +++ + + + L G +FV S G+ L ++
Sbjct: 308 GDIFKITLETDEDM-----VTEIRLKYFDTVPVAAAMCVLKTGFLFVASEFGNHYLYQIA 362
Query: 149 R--SPDENGTYVSVM---------------------ESFTNLAPIIDMVVVDLERQGQGQ 185
DE + S M + +L+PI+ + DL + Q
Sbjct: 363 HLGDDDEEPEFSSAMPLEEGDTFFFQPRPLKNLVLVDELDSLSPILFCQIADLANEDTPQ 422
Query: 186 LVTCSGGFKEGSLRIIRNGIGIEEHACIDLPG-IKGIWALSIGSPKNLDNTLVLSFVGHT 244
L G SLR++R+G+ + E A +LPG +W + D +++SFV T
Sbjct: 423 LYVACGRGPRSSLRVLRHGLEVSETAVSELPGNPNAVWTVRRHIEDEFDAYIIVSFVNAT 482
Query: 245 RVLTLSGAEVEETEMGGFTSDQQTFYCGNVDPRTVLQVTPSAAILISTESKARVSSWEPP 304
VL++ G VEE GF T C + ++QV P I + RV+ W+ P
Sbjct: 483 LVLSI-GETVEEVTDSGFLGTTPTLSCSLLGDDALVQVYPDGIRHIRADK--RVNEWKTP 539
Query: 305 NGKSISVVSCNKNQVLCA-TGCDVYYLEVHGS-EIKQLAHRA-LEYEVACLDISPLSNEE 361
K+I + N+ QV+ A TG ++ Y E+ S ++ + R + +V C+ ++ + E
Sbjct: 540 GKKTIVKCAVNQRQVVIALTGGELVYFEMDPSGQLNEYTERKEMSADVVCMSLANVPPGE 599
Query: 362 TSSEPAKAQLAAVGLWTDISARLLSLPSLEEVCKEPLGGEIIPRSILMTCFE-------- 413
+++ AVGL D + R++SL + C +PL + +P C
Sbjct: 600 Q-----RSRFLAVGL-VDNTVRIISLDPSD--CLQPLSMQALPAQPESLCIVEMGGTEKQ 651
Query: 414 ---------GHCYLLVALGDGSMFYFSLDPASGRLTDKKKVTLGTQPTVLKTFRSLSTTN 464
G YL + L +G + LDP +G L+D + LG++P L R
Sbjct: 652 DELGERGSIGFLYLNIGLQNGVLLRTVLDPVTGDLSDTRTRYLGSRPVKLFRVRMQGQEA 711
Query: 465 VFACSDRPTVIYSSNHKLVFSNVNLRQVNHMCSLNAESYPDSLALATDSTFTFGTIDEIQ 524
V A S R + YS + + ++ + +E P+ + + +T ++++
Sbjct: 712 VLAMSSRSWLSYSYQSRFHLTPLSYETLEFASGFASEQCPEGIVAISTNTLRILALEKLG 771
Query: 525 KLHIRTV-PLGEAPRRIAYQESSQTFGVITT 554
+ + PL PR+ S +I T
Sbjct: 772 AVFNQVAFPLQYTPRKFVIHPESNNLIIIET 802
Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/204 (22%), Positives = 91/204 (44%), Gaps = 11/204 (5%)
Query: 1010 IDQNTFEILHAHQLFPGEYALSLISSKFGEDPNTYFVLGTAVVHPEENEPKQGRIIIFHY 1069
I NT +++ Q E A S+ +F ++VL N ++ Y
Sbjct: 872 IQGNTLDLVQLEQ---NEAAFSVAVCRFSNTGEDWYVLVGVAKDLILNPRSVAGGFVYTY 928
Query: 1070 ---DDG-KLQQIAEKEIKGACYSMCEFNGKLLASINSTVRLFEWTNEKELR-LECSHFNN 1124
++G KL+ + + ++ ++ F G++L + +R+++ +K LR E H N
Sbjct: 929 KLVNNGEKLEFLHKTPVEEVPAAIAPFQGRVLIGVGKLLRVYDLGKKKLLRKCENKHIAN 988
Query: 1125 IIALFLKVKGDFILVGDLMRSLTLLQYKTMEGSFEEISRDYNPNWMTSIEILDDELFLGA 1184
I+ ++ G ++V D+ S ++YK E + D P W+T+ +LD + GA
Sbjct: 989 YIS-GIQTIGHRVIVSDVQESFIWVRYKRNENQLIIFADDTYPRWVTTASLLDYDTVAGA 1047
Query: 1185 ENSYNLFICQ--KDSAATSDEDRT 1206
+ N+ + + ++ DED T
Sbjct: 1048 DKFGNICVVRLPPNTNDEVDEDPT 1071
Score = 36.2 bits (82), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 3 SLRIIRNGIGIEEHACIDLPG-IKGIWALSIGSPKNLDNTLVLSFVGHTRVLTL 55
SLR++R+G+ + E A +LPG +W + D +++SFV T VL++
Sbjct: 434 SLRVLRHGLEVSETAVSELPGNPNAVWTVRRHIEDEFDAYIIVSFVNATLVLSI 487
>sp|Q1LVE8|SF3B3_DANRE Splicing factor 3B subunit 3 OS=Danio rerio GN=sf3b3 PE=2 SV=1
Length = 1217
Score = 131 bits (329), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 121/511 (23%), Positives = 217/511 (42%), Gaps = 61/511 (11%)
Query: 89 GRLFMLLLEKEEKMDGTFSVKEPKVELLGEISIPECLTYLDNGVVFVGSRLGDSQLVKLN 148
G +F + LE +E+M V E +++ I + + L G +FV S G+ L ++
Sbjct: 308 GDIFKVTLETDEEM-----VTEIRMKYFDTIPVATAMCVLKTGFLFVSSEFGNHYLYQIA 362
Query: 149 R--SPDENGTYVSVM-----ESF----------------TNLAPIIDMVVVDLERQGQGQ 185
DE + S M ++F +L+PI+ + DL + Q
Sbjct: 363 HLGDDDEEPEFSSAMPLEEGDTFFFQPRPLKNLVLVDEQESLSPIMSCQIADLANEDTPQ 422
Query: 186 LVTCSGGFKEGSLRIIRNGIGIEEHACIDLPG-IKGIWALSIGSPKNLDNTLVLSFVGHT 244
L G +LR++R+G+ + E A +LPG +W + D +++SFV T
Sbjct: 423 LYVACGRGPRSTLRVLRHGLEVSEMAVSELPGNPNAVWTVRRHVEDEFDAYIIVSFVNAT 482
Query: 245 RVLTLSGAEVEETEMGGFTSDQQTFYCGNVDPRTVLQVTPSAAILISTESKARVSSWEPP 304
VL++ G VEE GF T C + ++QV P I + RV+ W+ P
Sbjct: 483 LVLSI-GETVEEVTDSGFLGTTPTLSCSLLGEDALVQVYPDGIRHIRADK--RVNEWKTP 539
Query: 305 NGKSISVVSCNKNQVLCA-TGCDVYYLEVHGS-EIKQLAHRA-LEYEVACLDISPLSNEE 361
K+I + N+ QV+ A TG ++ Y E+ S ++ + R + +V C+ ++ + E
Sbjct: 540 GKKTIIRCAVNQRQVVIALTGGELVYFEMDPSGQLNEYTERKEMSADVVCMSLANVPPGE 599
Query: 362 TSSEPAKAQLAAVGLWTDISARLLSLPSLEEVCKEPLGGEIIPRSILMTCFE-------- 413
+++ AVGL D + R++SL + C +PL + +P C
Sbjct: 600 Q-----RSRFLAVGL-VDNTVRIISLDPSD--CLQPLSMQALPAQPESLCIVEMGGVEKQ 651
Query: 414 ---------GHCYLLVALGDGSMFYFSLDPASGRLTDKKKVTLGTQPTVLKTFRSLSTTN 464
G YL + L +G + LDP +G L+D + LG++P L R
Sbjct: 652 DELGEKGTIGFLYLNIGLQNGVLLRTVLDPVTGDLSDTRTRYLGSRPVKLFRVRMQGQEA 711
Query: 465 VFACSDRPTVIYSSNHKLVFSNVNLRQVNHMCSLNAESYPDSLALATDSTFTFGTIDEIQ 524
V A S R + YS + + ++ + + +E P+ + + +T ++++
Sbjct: 712 VLAMSSRSWLSYSYQSRFHLTPLSYETLEYASGFASEQCPEGIVAISTNTLRILALEKLG 771
Query: 525 KLHIRTV-PLGEAPRRIAYQESSQTFGVITT 554
+ + PL PR+ + +I T
Sbjct: 772 AVFNQVAFPLQYTPRKFVIHPETNNLILIET 802
Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/204 (22%), Positives = 91/204 (44%), Gaps = 11/204 (5%)
Query: 1010 IDQNTFEILHAHQLFPGEYALSLISSKFGEDPNTYFVLGTAVVHPEENEPKQGRIIIFHY 1069
I NT +++ QL E A S+ +F + ++VL N G I+ Y
Sbjct: 872 IQGNTLDLV---QLEQNEAAFSVAICRFLNGGDDWYVLVGVARDMILNPRSVGGGYIYTY 928
Query: 1070 ----DDGKLQQIAEKEIKGACYSMCEFNGKLLASINSTVRLFEWTNEKELR-LECSHFNN 1124
KL+ + + ++ ++ F G++L + +R+++ +K LR E H N
Sbjct: 929 RIVGGGDKLEFLHKTPVEDVPLAIAPFQGRVLVGVGKLLRIYDLGKKKLLRKCENKHVPN 988
Query: 1125 IIALFLKVKGDFILVGDLMRSLTLLQYKTMEGSFEEISRDYNPNWMTSIEILDDELFLGA 1184
++ + G ++V D+ SL ++Y+ E + D P W+T+ +LD + A
Sbjct: 989 LVTGIHTI-GQRVIVSDVQESLFWVRYRRNENQLIIFADDTYPRWITTACLLDYDTMASA 1047
Query: 1185 ENSYNLFICQ--KDSAATSDEDRT 1206
+ N+ + + +++ DED T
Sbjct: 1048 DKFGNICVVRLPPNTSDDVDEDPT 1071
Score = 35.8 bits (81), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 3 SLRIIRNGIGIEEHACIDLPG-IKGIWALSIGSPKNLDNTLVLSFVGHTRVLTL 55
+LR++R+G+ + E A +LPG +W + D +++SFV T VL++
Sbjct: 434 TLRVLRHGLEVSEMAVSELPGNPNAVWTVRRHVEDEFDAYIIVSFVNATLVLSI 487
>sp|Q54SA7|SF3B3_DICDI Probable splicing factor 3B subunit 3 OS=Dictyostelium discoideum
GN=sf3b3 PE=3 SV=1
Length = 1256
Score = 108 bits (270), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 91/316 (28%), Positives = 145/316 (45%), Gaps = 45/316 (14%)
Query: 108 VKEPKVELLGEISIPECLTYLDNGVVFVGSRLGDSQLV------------KLNRSPDENG 155
V E V I + CLT L NG +F S GD L + R D++G
Sbjct: 329 VSEVNVNYFDTIVLANCLTVLKNGFLFAASEFGDHTLYFFKSIGDEEEEGQAKRLEDKDG 388
Query: 156 --------TYVSVMESFTNL---------APIIDMVVVDLERQGQGQLVTCSGGFKEGSL 198
+ + ME NL +PIID V+DL R+ QL + G SL
Sbjct: 389 HLWFTPRNSCGTKMEELKNLEPTSHLSSLSPIIDFKVLDLVREENPQLYSLCGTGLNSSL 448
Query: 199 RIIRNGIGIEEHACIDLPGI-KGIWALSIG-SPKNLDNT---LVLSFVGHTRVLTLSGAE 253
+++R+G+ + +LPG+ GIW + SP +D T +V+SFVG T VL++ G
Sbjct: 449 KVLRHGLSVTTITTANLPGVPSGIWTVPKSTSPNAIDQTDKYIVVSFVGTTSVLSV-GDT 507
Query: 254 VEETEMGGFTSDQQTFYCGNVDPRTVLQVTPSAAILISTESKARVSSWEPPNGKSISVVS 313
++E G T ++ ++QV P+ I +S R++ W P K+I S
Sbjct: 508 IQENHESGILETTTTLLVKSMGDDAIIQVFPTGFRHI--KSDLRINEWRAPGRKTIVRAS 565
Query: 314 CNKNQVLCA-TGCDVYYLEV-HGSEIKQLAHRALEYEVACLDISPLSNEETSSEPAKAQL 371
N++Q+ A +G ++ Y E+ S + ++ + L ++AC++ISP+ A+
Sbjct: 566 ANQSQLAIALSGGEIIYFELDQASNLIEIIKKDLRRDIACIEISPIPKGRN-----MARF 620
Query: 372 AAVGLWTDISARLLSL 387
AV W R+LSL
Sbjct: 621 IAVSDWEG-PIRVLSL 635
Score = 87.0 bits (214), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 56/192 (29%), Positives = 100/192 (52%), Gaps = 9/192 (4%)
Query: 1009 IIDQNTFEILHAHQLFPGEYALSLISSKFGEDPNTYFVLGTA---VVHPEENEPKQGRII 1065
I+D T E L + L GE S+ + FGE + V+G V++P+ + K +
Sbjct: 908 IMDPITHESLESLMLEDGEAGFSVCTCSFGESGEIFLVVGCVTDMVLNPKSH--KSAHLN 965
Query: 1066 IFHYDDG--KLQQIAEKEIKGACYSMCEFNGKLLASINSTVRLFEWTNEKELR-LECSHF 1122
++ + DG KL+ + + E++ Y+M +F GKL+ + ++R+++ +K LR E +
Sbjct: 966 LYRFIDGGKKLELLYKTEVEEPVYAMAQFQGKLVCGVGKSIRIYDMGKKKLLRKCETKNL 1025
Query: 1123 NNIIALFLKVKGDFILVGDLMRSLTLLQYKTMEGSFEEISRDYNPNWMTSIEILDDELFL 1182
N I + GD ++VGD+ S+ ++YK E + D P WMTS +LD +
Sbjct: 1026 PNTIVNIHSL-GDRLVVGDIQESIHFIKYKRSENMLYVFADDLAPRWMTSSVMLDYDTVA 1084
Query: 1183 GAENSYNLFICQ 1194
GA+ N+F+ +
Sbjct: 1085 GADKFGNIFVLR 1096
Score = 43.5 bits (101), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 61/124 (49%), Gaps = 1/124 (0%)
Query: 417 YLLVALGDGSMFYFSLDPASGRLTDKKKVTLGTQPTVLKTFRSLSTTNVFACSDRPTVIY 476
+L V L +G + +LD +G L+D + LG +P L + + + A S R + Y
Sbjct: 702 FLFVGLKNGVVKRATLDSVTGELSDIRTRLLGRKPVKLFKVKVRGSNAMLALSSRVWLNY 761
Query: 477 SSNHKLVFSNVNLRQVNHMCSLNAESYPDSLALATDSTFTFGTIDEIQKL-HIRTVPLGE 535
+ KL +++ + + +L++E +S+ +++ +ID++ L + T+ L
Sbjct: 762 INQGKLDIVPLSIEPLENASNLSSEQSAESIVATSENKIIIFSIDKLGDLFNQETIKLNA 821
Query: 536 APRR 539
P+R
Sbjct: 822 TPKR 825
Score = 38.5 bits (88), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 36/58 (62%), Gaps = 5/58 (8%)
Query: 3 SLRIIRNGIGIEEHACIDLPGI-KGIWALSIG-SPKNLDNT---LVLSFVGHTRVLTL 55
SL+++R+G+ + +LPG+ GIW + SP +D T +V+SFVG T VL++
Sbjct: 447 SLKVLRHGLSVTTITTANLPGVPSGIWTVPKSTSPNAIDQTDKYIVVSFVGTTSVLSV 504
>sp|Q4WLI5|RSE1_ASPFU Pre-mRNA-splicing factor rse1 OS=Neosartorya fumigata (strain ATCC
MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=rse1 PE=3
SV=1
Length = 1225
Score = 107 bits (267), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 130/558 (23%), Positives = 224/558 (40%), Gaps = 58/558 (10%)
Query: 82 YLLGDLAGRLFMLLLEKEEKMDG--TFSVKEPKVELLGEISIPECLTYLDNGVVFVGSRL 139
+LL G LF + ++ E +G T VK K++ + I L L +G ++V S
Sbjct: 306 FLLQTEDGDLFKVTIDMVEDDNGQLTGEVKRLKIKYFDTVPIASSLLILKSGFLYVASEA 365
Query: 140 GDSQLVKLNRSPDEN---------------------------GTYVSVMESFTNLAPIID 172
G+ + + D++ ++++E+ +L P+ID
Sbjct: 366 GNHHFYQFEKLGDDDEETEFNSENFPADLSVPCEPVFFQPRGAENLNLVETLNSLNPLID 425
Query: 173 MVVVDLERQGQGQLVTCSGGFKEGSLRIIRNGIGIEEHACIDLPGI-KGIWALSIGSPKN 231
+V+L Q+ T SG S R +++G+ + E +LP + +W +
Sbjct: 426 SKIVNLNEDDAPQIYTVSGSGARSSFRTLKHGLEVSEIVESELPSVPSAVWTTKLTRADE 485
Query: 232 LDNTLVLSFVGHTRVLTLSGAEVEETEMGGFTSDQQTFYCGNVDPRTVLQVTPSAAILIS 291
D ++LSF T VL++ G VEE GF S T + +++QV P I
Sbjct: 486 FDAYIILSFANGTLVLSI-GETVEEVTDTGFLSTAPTLAVQQLGEDSLIQVHPRGIRHIL 544
Query: 292 TESKARVSSWEPPNGKSISVVSCNKNQVLCA--TGCDVYY-LEVHGSEIKQLAHRALEYE 348
+ RV+ W P +SI + N+ QV A +G VY+ ++ G+ + R +
Sbjct: 545 ADR--RVNEWPAPQHRSIVAAATNERQVAVALSSGEIVYFEMDADGTLAEYDERRQMSGT 602
Query: 349 VACLDISPLSNEETSSEPAKAQLAAVGLWTDISARLLSL--------PSLEEVCKEPLGG 400
V CL + E ++ AVG D + R+LSL S++ + P
Sbjct: 603 VTCLSLG-----EVPEGRVRSSFLAVGC-DDSTVRILSLDPDSTLENKSVQALTSAPSAL 656
Query: 401 EIIPRSILMTCFEGHC-YLLVALGDGSMFYFSLDPASGRLTDKKKVTLGTQPTVLKTFRS 459
I+ S+ + G YL + L G LD +G L+D + LG +P L
Sbjct: 657 NIM--SMADSSSGGTTLYLHIGLYSGVYLRTVLDEVTGELSDTRTRFLGAKPVKLFRVSV 714
Query: 460 LSTTNVFACSDRPTVIYSSNHKLVFSNVNLRQVNHMCSLN--AESYPDSLALATDSTFTF 517
T V A S RP + YS F L V N +E + +
Sbjct: 715 KGQTAVLALSSRPWLGYSDIQTKGFMLTPLDYVGLEWGWNFSSEQCVEGMVGIQAQNLRI 774
Query: 518 GTIDEIQKLHIR-TVPLGEAPRRIAYQESSQTFGVITTRIDIQEADGSTPVRPSASTQAQ 576
+I+++ ++ ++PL PRR+ F VI + D +T R ++A+
Sbjct: 775 FSIEKLDNNILQESIPLSNTPRRMLKHPEQPLFYVIES--DNNVLSPATRARLIEDSKAR 832
Query: 577 NTTSSTISSLSYIKPGST 594
N ++ + + P +T
Sbjct: 833 NGETNVLPPEDFGYPRAT 850
Score = 71.2 bits (173), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 56/198 (28%), Positives = 100/198 (50%), Gaps = 9/198 (4%)
Query: 1027 EYALSLISSKFG-EDPNTYFVLGTA---VVHPEENEPKQGRIIIFHYDDGKLQQIAEKEI 1082
E A+S+ + F +D T+ V+GTA +V+P + I F D +L+ I + ++
Sbjct: 878 EAAVSMAAVPFSSQDDETFLVVGTAKDMIVNPPSSAGGFIHIYRFQEDGKELEFIHKTKV 937
Query: 1083 KGACYSMCEFNGKLLASINSTVRLFEWTNEKELRLECSHFNNIIALFLKVKGDFILVGDL 1142
+ ++ F G+LLA I ST+R+++ ++ LR + + + L+ +G I+V D+
Sbjct: 938 EEPPLALLGFQGRLLAGIGSTLRIYDLGMKQLLRKCQAQVVSKTIVGLQTQGSRIVVSDV 997
Query: 1143 MRSLTLLQYKTMEGSFEEISRDYNPNWMTSIEILDDELFLGAENSYNLFI--CQKDSAAT 1200
S+T + YK + D W TS ++D E G + NL++ C K ++
Sbjct: 998 RESVTYVVYKYQDNILIPFVDDSVSRWTTSTTMVDYETVAGGDKFGNLWLVRCPKKASEE 1057
Query: 1201 SDEDRT--HL-QEVGTVH 1215
+DED + HL E G +H
Sbjct: 1058 ADEDGSGAHLIHERGYLH 1075
>sp|Q9UTT2|RSE1_SCHPO Pre-mRNA-splicing factor prp12 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=prp12 PE=1 SV=1
Length = 1206
Score = 105 bits (262), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 123/501 (24%), Positives = 199/501 (39%), Gaps = 55/501 (10%)
Query: 82 YLLGDLAGRLFMLLLEKEEKMDGTFSVKEPKVELLGEISIPECLTYLDNGVVFVGSRLGD 141
YLL G L L +E DG +V E +++ + + L L G +FV + G+
Sbjct: 319 YLLQTGDGDLLKLTIEH----DGQGNVVELRLKYFDTVPLAVQLNILKTGFLFVATEFGN 374
Query: 142 SQLVKLNR-----------------SPDENGTY-----------VSVMESFTNLAPIIDM 173
QL + +E GT +S++E +L + D
Sbjct: 375 HQLYQFENLGIDDDELEITSLDFQAQDNEVGTKNVHFGVRGLQNLSLVEEIPSLYSLTDT 434
Query: 174 VVVDLERQGQG-QLVTCSGGFKEGSLRIIRNGIGIEEHACIDLPGIK-GIWALSIGSPKN 231
+++ G+ QL T G SLR +R G+ E +LPG IW L +
Sbjct: 435 LLMKAPSSGEANQLYTVCGRGSNSSLRQLRRGLETTEIVASELPGAPIAIWTLKLNQTDV 494
Query: 232 LDNTLVLSFVGHTRVLTLSGAEVEETEMGGFTSDQQTFYCGNVDPRTVLQVTPSAAILIS 291
D+ ++LSF T VL++ G VEE GF S T + +++Q+ P I
Sbjct: 495 YDSYIILSFTNGTLVLSI-GETVEEISDSGFLSSVSTLNARQMGRDSLVQIHPKGIRYI- 552
Query: 292 TESKARVSSWEPPNGKSISVVSCNKNQVLCA-TGCDVYYLE----VHGSEIKQLAHR-AL 345
+ + S W+ P + + N Q++ A + ++ Y E V G ++ + R L
Sbjct: 553 -RANKQTSEWKLPQDVYVVQSAINDMQIVVALSNGELVYFEMSDDVEGGQLNEYQERKTL 611
Query: 346 EYEVACLDISPLSNEETSSEPAKAQLAAVGLWTDISARLLSL---PSLEEVCKEPLGGEI 402
V L + P+ +E S LA D + R+LSL +LE + + L
Sbjct: 612 TANVTSLALGPV--QEGSRRSNFMCLAC----DDATVRVLSLDLYTTLENLSVQALSSPA 665
Query: 403 IPRSILMTCFEG--HCYLLVALGDGSMFYFSLDPASGRLTDKKKVTLGTQPTVLKTFRSL 460
I+ G YL + L +G +D SG+L D + LG + +
Sbjct: 666 NSLCIIPMNVNGVSTLYLHIGLMNGVYLRTVIDVTSGQLLDTRTRFLGPRAVKIYPITMK 725
Query: 461 STTNVFACSDRPTVIYSSNHKLVFSNVNLRQVNHMCSLNAESYPDSLALATDSTFTFGTI 520
+ V A S R + YS L S + ++H S +E P+ + +T T+
Sbjct: 726 NQNTVLAVSSRTFLAYSYQQNLQLSPIAYSAIDHASSFASEQCPEGIVAIQKNTLKIFTV 785
Query: 521 DEIQ-KLHIRTVPLGEAPRRI 540
D +Q L PL PR+I
Sbjct: 786 DSLQDDLKSDIYPLICTPRKI 806
Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/203 (23%), Positives = 92/203 (45%), Gaps = 5/203 (2%)
Query: 1009 IIDQNTFEILHAHQLFPGEYALSLISSKFGEDPNTYFVLGTAV-VHPEENEPKQG--RII 1065
+ D + +I+H L E A S+ ++ F + V G+A + E G R+
Sbjct: 859 VFDMISKKIIHESPLGDNEAAFSMTAAFFKNRDEFFLVAGSATNMDLECRTCSHGNFRVY 918
Query: 1066 IFHYDDGKLQQIAEKEIKGACYSMCEFNGKLLASINSTVRLFEWTNEKELRLECSHFNNI 1125
FH + KL+ I+ EI G ++ F G++LA + +R+++ N+K LR +
Sbjct: 919 RFHDEGKKLELISHTEIDGIPMALTPFQGRMLAGVGRFLRIYDLGNKKMLRKGELSAVPL 978
Query: 1126 IALFLKVKGDFILVGDLMRSLTLLQYKTMEGSFEEISRDYNPNWMTSIEILDDELFLGAE 1185
+ V+ I+V D S+ + YK + + D W T+ ++D + G +
Sbjct: 979 FITHITVQASRIVVADSQYSVRFVVYKPEDNHLLTFADDTIHRWTTTNVLVDYDTLAGGD 1038
Query: 1186 NSYNLFI--CQKDSAATSDEDRT 1206
N+++ C + + +DE+ +
Sbjct: 1039 KFGNIWLLRCPEHVSKLADEENS 1061
Score = 34.3 bits (77), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 3 SLRIIRNGIGIEEHACIDLPGIK-GIWALSIGSPKNLDNTLVLSFVGHTRVLTL 55
SLR +R G+ E +LPG IW L + D+ ++LSF T VL++
Sbjct: 459 SLRQLRRGLETTEIVASELPGAPIAIWTLKLNQTDVYDSYIILSFTNGTLVLSI 512
>sp|Q7RYR4|RSE1_NEUCR Pre-mRNA-splicing factor rse-1 OS=Neurospora crassa (strain ATCC
24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
GN=rse-1 PE=3 SV=2
Length = 1209
Score = 103 bits (256), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 115/453 (25%), Positives = 188/453 (41%), Gaps = 53/453 (11%)
Query: 62 FHLLRGFSSLGSLWNGWSERYLLGDLAGRLFMLLLEKEEKMDG--TFSVKEPKVELLGEI 119
H L+G S G+ + +LL G LF + ++ E DG T VK K++ I
Sbjct: 297 MHKLKG--SAGAFF------FLLQTDDGDLFKVTIDMIEDSDGNPTGEVKRLKIKYFDTI 348
Query: 120 SIPECLTYLDNGVVFVGSRLGDSQLVKLNRSPDE-------------------NGTY--- 157
+ L L +G +F S G+ + + D+ N Y
Sbjct: 349 PVATSLCILKSGFLFAASEFGNHHFYQFEKLGDDDEELEFSSDDFPTDPTASYNPVYFHP 408
Query: 158 -----VSVMESFTNLAPIIDMVVVDLERQGQGQLVTCSGGFKEGSLRIIRNGIGIEEHAC 212
+ ++ES ++ P +D V +L + Q+ + G + R++++G+ + E
Sbjct: 409 RPLENLVLVESIDSMNPQVDCKVANLTGEDAPQIYSVCGNGARSTFRMLKHGLEVSEIVA 468
Query: 213 IDLPGI-KGIWALSIGSPKNLDNTLVLSFVGHTRVLTLSGAEVEETEMGGFTSDQQTFYC 271
+LPG +W + D +VLSF T VL++ G VEE GF + T
Sbjct: 469 SELPGTPSAVWTTKLTKYDQYDAYIVLSFTNGTLVLSI-GETVEEVSDSGFLTTAPTLAV 527
Query: 272 GNVDPRTVLQVTPSAAILISTESKARVSSWEPPNGKSISVVSCNKNQVLCA-TGCDVYYL 330
+ ++QV P I + RV+ W P +SI + N+NQV+ A + ++ Y
Sbjct: 528 QQMGEDGLIQVHPKG---IRHIVQGRVNEWPAPQHRSIVAATANENQVVIALSSGEIVYF 584
Query: 331 EVHGSEIKQLAHRALEYEVACLDISPLSNEETSSEPAKAQLAAVGLWTDISARLLSL--- 387
E+ LA + E++ ++ LS + ++ AVG D + R+LSL
Sbjct: 585 EMDSD--GSLAEYDEKKEMSGT-VTSLSVGQVPEGLKRSSFLAVGC-DDCTVRILSLDPD 640
Query: 388 PSLEEVCKEPLGGEIIPRSILMT--CFEGHC-YLLVALGDGSMFYFSLDPASGRLTDKKK 444
+LE + L SI+ F G YL + L G LD +G LTD ++
Sbjct: 641 STLEMKSIQALTAAPSALSIMSMEDSFGGSTLYLHIGLHSGVYLRTVLDEVTGELTDTRQ 700
Query: 445 VTLGTQPTVLKTFRSLSTTNVFACSDRPTVIYS 477
LG +PT L V A S RP + Y+
Sbjct: 701 KFLGPKPTRLFQVSVQDQPCVLALSSRPWLGYT 733
Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 86/180 (47%), Gaps = 8/180 (4%)
Query: 1029 ALSLISSKFGEDPNTYFVLGTA---VVHPEENEPKQGRIIIFHYDDGKLQQIAEKEIKGA 1085
A+ +S+ GE ++ V+GT V+ P + + FH D L+ I + ++
Sbjct: 884 AIVPFASQEGE---SFLVVGTGKDMVLDPRQFTEGYIHVYRFHEDGRDLEFIHKTRVEEP 940
Query: 1086 CYSMCEFNGKLLASINSTVRLFEWTNEKELRLECSHFNNIIALFLKVKGDFILVGDLMRS 1145
++ F G+LLA + T+R+++ ++ LR + + + L+ +G+ I+VGDL +
Sbjct: 941 PLALIPFQGRLLAGVGKTLRIYDLGLKQLLRKAQADVTPTLIVSLQSQGNRIIVGDLQQG 1000
Query: 1146 LTLLQYKTMEGSFEEISRDYNPNWMTSIEILDDELFLGAENSYNLFI--CQKDSAATSDE 1203
+T + YK + D W T ++D E G + N++I C + + +DE
Sbjct: 1001 ITYVVYKAEGNRLIPFADDTLNRWTTCTTMVDYESVAGGDKFGNIYIVRCPERVSQETDE 1060
>sp|Q5B1X8|RSE1_EMENI Pre-mRNA-splicing factor rse1 OS=Emericella nidulans (strain FGSC
A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=rse1
PE=3 SV=2
Length = 1209
Score = 102 bits (255), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 109/445 (24%), Positives = 182/445 (40%), Gaps = 53/445 (11%)
Query: 82 YLLGDLAGRLFMLLLEKEEKMDG--TFSVKEPKVELLGEISIPECLTYLDNGVVFVGSRL 139
+LL G LF L L+ E G T VK K++ + + L L +G ++V +
Sbjct: 306 FLLQTEDGDLFKLTLDMVEDDKGQLTGEVKGLKIKYFDTVPLASSLLILKSGFLYVAAEG 365
Query: 140 GDSQLVKLNRSPDEN---------------------------GTYVSVMESFTNLAPIID 172
G+ + + D++ ++++E+ +L P++D
Sbjct: 366 GNHHFYQFEKLGDDDEETEFNSDDFSADPAAPCTPVYFQPRGAENLNLVEAINSLNPLVD 425
Query: 173 MVVVDLERQGQGQLVTCSGGFKEGSLRIIRNGIGIEEHACIDLPGI-KGIWALSIGSPKN 231
VV++ Q+ T SG + R +++G+ + E +LP + +W +
Sbjct: 426 SKVVNISEDDAPQIFTVSGTGARSTFRTLKHGLEVSEIVESELPSVPSAVWTTKLTRADE 485
Query: 232 LDNTLVLSFVGHTRVLTLSGAEVEETEMGGFTSDQQTFYCGNVDPRTVLQVTPSAAILIS 291
D +VLSF T VL++ G VEE GF S T + +++Q+ P I
Sbjct: 486 FDAYIVLSFANGTLVLSI-GETVEEVTDTGFLSSAPTLAVQQLGEDSLIQIHPRGIRHIL 544
Query: 292 TESKARVSSWEPPNGKSISVVSCNKNQVLCA--TGCDVYY-LEVHGSEIKQLAHRALEYE 348
+ RV+ W P +SI + N+ QV A +G VY+ L+ GS + R +
Sbjct: 545 ADR--RVNEWPAPQHRSIVAAATNERQVAVALSSGEIVYFELDADGSLAEYDERRQMSGT 602
Query: 349 VACLDISPLSNEETSSEPAKAQLAAVGLWTDISARLLSL--------PSLEEVCKEPLGG 400
V CL + E ++ AVG D + R+LSL S++ + P
Sbjct: 603 VTCLSLG-----EVPEGRVRSSFLAVGC-DDSTVRILSLDPDTTLENKSVQALTAAPSAL 656
Query: 401 EIIPRSILMTCFEGHC-YLLVALGDGSMFYFSLDPASGRLTDKKKVTLGTQPTVLKTFRS 459
II ++ + G YL + L G +LD +G L+D + LG++ L
Sbjct: 657 NII--AMADSSSGGTTLYLHIGLHSGVYLRTALDEVTGELSDTRTRFLGSKAVKLFQVSV 714
Query: 460 LSTTNVFACSDRPTVIYSSNHKLVF 484
T V A S RP + YS F
Sbjct: 715 TGQTAVLALSSRPWLGYSDTQTKGF 739
Score = 64.7 bits (156), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 53/208 (25%), Positives = 99/208 (47%), Gaps = 15/208 (7%)
Query: 1017 ILHAHQLFPGEYALSLISSKF-GEDPNTYFVLGTA---VVHPEENEPKQGRIIIFHYDDG 1072
++ A +L E A+S+ + F +D T+ V+GTA V+P + I F D
Sbjct: 868 VVGAVELEENEAAVSIAAVPFTSQDDETFLVVGTAKDMTVNPPSSAGGYIHIYRFQEDGK 927
Query: 1073 KLQQIAEKEIKGACYSMCEFNGKLLASINSTVRLFEWTNEKELRLECSHFNNIIALFLKV 1132
+L+ I + +++ ++ F G+LLA + S +R+++ ++ LR + + L+
Sbjct: 928 ELEFIHKTKVEEPPLALLGFQGRLLAGVGSVLRIYDLGMKQLLRKCQAAVAPKAIVGLQT 987
Query: 1133 KGDFILVGDLMRSLTLLQYKTMEGSFEEISRDYNPNWMTSIEILDDELFLGAENSYNLFI 1192
+G I+V D+ S+T + YK + D W T+ ++D E G + NL++
Sbjct: 988 QGSRIVVSDVRESVTYVVYKYQDNVLIPFVDDSIARWTTAATMVDYETTAGGDKFGNLWL 1047
Query: 1193 --CQKDSAATSDE---------DRTHLQ 1209
C K ++ +DE DR +LQ
Sbjct: 1048 VRCPKKASEEADEEGSGAHLIHDRGYLQ 1075
>sp|Q4PGM6|RSE1_USTMA Pre-mRNA-splicing factor RSE1 OS=Ustilago maydis (strain 521 / FGSC
9021) GN=RSE1 PE=3 SV=1
Length = 1221
Score = 100 bits (248), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 119/507 (23%), Positives = 207/507 (40%), Gaps = 62/507 (12%)
Query: 89 GRLFMLLLEKEEKMDGTFSVKEPKVELLGEISIPECLTYLDNGVVFVGSRLGDSQLVKLN 148
G LF + +E ++ ++ K++ + + L L +G +FV S G L
Sbjct: 319 GDLFKITMEHQDD-----EIRSLKIKYFDTVPVASGLVILRSGFLFVASEYGAQLLYSFQ 373
Query: 149 RSPDENG--TYVSV-------------MESFT--------------NLAPIIDMVVVDLE 179
+ D++ Y+S + +FT +L PI+D ++
Sbjct: 374 KLGDDDDLPEYISTDYDENGAGRRRPQLPTFTPRPLDNLVQVDEMPSLDPILDAKPLNPL 433
Query: 180 RQGQGQLVTCSGGFKEGSLRIIRNGIGIEEHACIDLPGI-KGIWALSIGSPKNLDNTLVL 238
Q+ G S +++R+G+ ++E DLPG+ +W I D+ ++L
Sbjct: 434 AADSPQIFAACGRGARSSFKMLRHGLEVQEAVSSDLPGVPSAVWTTKITQQDEYDSYIIL 493
Query: 239 SFVGHTRVLTLSGAEVEETEMGGFTSDQQTFYCGNVDPRTVLQVTPSAAILISTESKARV 298
SFV T VL++ G +EE GF + T + +LQV P + + + +
Sbjct: 494 SFVNGTLVLSI-GETIEEVSDSGFLTSSSTLAVQQLGQDALLQVHPHGIRHVLVDKQ--I 550
Query: 299 SSWEPP---NGKSISVVSC--NKNQVLCATGCD--VYY-LEVHGSEIKQLAHRALEYEVA 350
+ W P NG+ ++V+ N+ QV+ A + VY+ L++ G + +A+ V
Sbjct: 551 NEWATPSLPNGRQTTIVATCTNERQVVVALSSNELVYFELDMDGQLNEYQERKAMGAGVL 610
Query: 351 CLDISPLSNEETSSEPAKAQLAAVGLWTDISARLLSLPSLEEVCKEPLGGEIIPRSIL-- 408
+ + P E P AVG D + R++SL + + P S +
Sbjct: 611 TMSM-PDCPEGRQRTP----YLAVGC-DDSTVRIISLEPNSTLASISIQALTAPASSICM 664
Query: 409 -----MTCFEGHCYLLVALG--DGSMFYFSLDPASGRLTDKKKVTLGTQPTVLKTFRSLS 461
T H V +G +G + LD +G+LTD + LG++ L +
Sbjct: 665 AEMLDATIDRNHATTFVNIGLQNGVLLRTILDAVTGQLTDTRTRFLGSKAVRLIRTKVHG 724
Query: 462 TTNVFACSDRPTVIYSSNHKLVFSNVNLRQVNHMCSLNAESYPDSLALATDSTFTFGTID 521
V A S R + Y+ +L F + ++H S +AE P+ L ST TI
Sbjct: 725 QAAVMALSTRTWLSYTYQDRLQFVPLIFDVLDHAWSFSAELCPEGLIGIVGSTLRIFTIP 784
Query: 522 EI-QKLHIRTVPLGEAPRRIAYQESSQ 547
+ KL +V L PR+IA + Q
Sbjct: 785 SLASKLKQDSVALSYTPRKIANHPNEQ 811
Score = 58.9 bits (141), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 55/226 (24%), Positives = 105/226 (46%), Gaps = 13/226 (5%)
Query: 995 PADFN-MEVEVHN----LLIIDQNTFEILHAHQLFPGEYALSLISSKFGE-DPNTYFVLG 1048
PA+F + E N + +D + H ++ E A S+ F + V+G
Sbjct: 852 PAEFGAIRAEAGNWASCIRAVDGVQAQTTHRLEMDDNEAAFSIAVVPFASAEKEVMLVVG 911
Query: 1049 TAV-VHPEENEPKQGRIIIFHY-DDGK-LQQIAEKEIKGACYSMCEFNGKLLASINSTVR 1105
+AV V K+ + + D+G+ L+ + + E+ + F G+LLA I +R
Sbjct: 912 SAVDVVLSPRSCKKAYLTTYRLLDNGRELELLHKTEVDDIPLVLRAFQGRLLAGIGKALR 971
Query: 1106 LFEWTNEKELRLECSHFNNIIALF-LKVKGDFILVGDLMRSLTLLQYKTMEGSFEEISRD 1164
+++ +K LR +C + + A+ L +G I+VGD+ S+ YK +E + D
Sbjct: 972 IYDLGKKKLLR-KCENRSFPTAVVSLDAQGSRIVVGDMQESIIFASYKPLENRLVTFADD 1030
Query: 1165 YNPNWMTSIEILDDELFLGAENSYNLFICQKD--SAATSDEDRTHL 1208
P ++T +LD + A+ N+++ + D ++ + DED T +
Sbjct: 1031 VMPKFVTRCTMLDYDTVAAADKFGNIYVLRLDGNTSRSVDEDPTGM 1076
Score = 40.4 bits (93), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 3 SLRIIRNGIGIEEHACIDLPGI-KGIWALSIGSPKNLDNTLVLSFVGHTRVLTL 55
S +++R+G+ ++E DLPG+ +W I D+ ++LSFV T VL++
Sbjct: 451 SFKMLRHGLEVQEAVSSDLPGVPSAVWTTKITQQDEYDSYIILSFVNGTLVLSI 504
>sp|P0CR22|RSE1_CRYNJ Pre-mRNA-splicing factor RSE1 OS=Cryptococcus neoformans var.
neoformans serotype D (strain JEC21 / ATCC MYA-565)
GN=RSE1 PE=3 SV=1
Length = 1217
Score = 96.3 bits (238), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 112/482 (23%), Positives = 188/482 (39%), Gaps = 46/482 (9%)
Query: 112 KVELLGEISIPECLTYLDNGVVFVGSRLGDSQLVKLNRSPDENGTY-------------- 157
K++ + + L L G ++V S D L + +++G
Sbjct: 337 KIKYFDTVPVANSLCILKRGYIYVASEFSDQNLYQFQSLAEDDGEQEWSSTDYPENGNID 396
Query: 158 ---------------VSVMESFTNLAPIIDMVVVDL--ERQGQGQLVTCSGGFKEGSLRI 200
+ ++++ +L PI D VV+L Q+ G + R
Sbjct: 397 GPLPFAFFDPQPLRNLLLVDTVPSLDPITDAHVVNLLGASSDTPQIYAACGRGARSTFRT 456
Query: 201 IRNGIGIEEHACIDLPGI-KGIWALSIGSPKNLDNTLVLSFVGHTRVLTLSGAEVEETEM 259
+++G+ + E LPG+ +W L + D+ +VLSF T VL++ G +EE
Sbjct: 457 LKHGLDVAEMVSSPLPGVPTNVWTLKLTEDDEYDSYIVLSFPNGTLVLSI-GETIEEVND 515
Query: 260 GGFTSDQQTFYCGNVDPRTVLQVTPSAAILISTESKARVSSWEPPNGKSISVVSCNKNQV 319
GF S T + +LQV P L + RV W P G++I + N+ QV
Sbjct: 516 TGFLSSGPTLAVQQLGNAGLLQVHPYG--LRHIRAADRVDEWPAPPGQTIVAATTNRRQV 573
Query: 320 LCA--TGCDVYY-LEVHGSEIKQLAHRALEYEVACLDIS--PLSNEETSSEPA---KAQL 371
+ A T VY+ L+ GS + +AL C+ I+ P TS +
Sbjct: 574 VIALSTAELVYFELDPEGSLSEYQEKKALPGNATCVTIAEVPEGRRRTSFLAVGCDNQTV 633
Query: 372 AAVGLWTDISARLLSLPSLEEVCKEPLGGEIIPRSILMTCFEGHCYLLVALGDGSMFYFS 431
+ + L D + LSL +L EI SI +L + L +G +
Sbjct: 634 SIISLEPDSTLDTLSLQALTAPPTSICLAEIFDTSIDKN--RATMFLNIGLMNGVLLRTV 691
Query: 432 LDPASGRLTDKKKVTLGTQPTVLKTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLRQ 491
+DP G L+D + LG +P L +V A S R ++Y+ L +
Sbjct: 692 VDPVDGSLSDTRLRFLGAKPPKLVRANVQGQPSVMAFSSRTWLLYTYQDMLQTQPLIYDT 751
Query: 492 VNHMCSLNAESYPDSLALATDSTFTFGTIDEI-QKLHIRTVPLGEAPRRIAYQESSQTFG 550
+ + SL+A PD L + +T I ++ +KL + L PR+ + F
Sbjct: 752 LEYAWSLSAAMCPDGLIGISGNTLRIFNIPKLGEKLKQDSTALTYTPRKFISHPFNSVFY 811
Query: 551 VI 552
+I
Sbjct: 812 MI 813
Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 71/151 (47%), Gaps = 14/151 (9%)
Query: 1060 KQGRIIIFHYDDGKLQQIAEKEIKGACYSMCEFNGKLLASINSTVRLFEWTNEKELRLEC 1119
+QGRI+ F L + +I + F G LLA I ++RL+E + LR +C
Sbjct: 931 EQGRILEF------LHKTKTDDIP---LCLAGFQGFLLAGIGKSLRLYEMGKKALLR-KC 980
Query: 1120 SHFNNIIALF-LKVKGDFILVGDLMRSLTLLQYKTMEGSFEEI-SRDYNPNWMTSIEILD 1177
+ A+ + V+G I+VGD+ S Y+++ I + D P W+T + +D
Sbjct: 981 ENNGFPTAVVTINVQGARIIVGDMQESTFYCVYRSIPTRQLLIFADDSQPRWITCVTSVD 1040
Query: 1178 DELFLGAENSYNLFICQKDSAATS--DEDRT 1206
E + N+FI + D + + D+D T
Sbjct: 1041 YETVACGDKFGNIFINRLDPSISEKVDDDPT 1071
>sp|P0CR23|RSE1_CRYNB Pre-mRNA-splicing factor RSE1 OS=Cryptococcus neoformans var.
neoformans serotype D (strain B-3501A) GN=RSE1 PE=3 SV=1
Length = 1217
Score = 96.3 bits (238), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 112/482 (23%), Positives = 188/482 (39%), Gaps = 46/482 (9%)
Query: 112 KVELLGEISIPECLTYLDNGVVFVGSRLGDSQLVKLNRSPDENGTY-------------- 157
K++ + + L L G ++V S D L + +++G
Sbjct: 337 KIKYFDTVPVANSLCILKRGYIYVASEFSDQNLYQFQSLAEDDGEQEWSSTDYPENGNID 396
Query: 158 ---------------VSVMESFTNLAPIIDMVVVDL--ERQGQGQLVTCSGGFKEGSLRI 200
+ ++++ +L PI D VV+L Q+ G + R
Sbjct: 397 GPLPFAFFDPQPLRNLLLVDTVPSLDPITDAHVVNLLGASSDTPQIYAACGRGARSTFRT 456
Query: 201 IRNGIGIEEHACIDLPGI-KGIWALSIGSPKNLDNTLVLSFVGHTRVLTLSGAEVEETEM 259
+++G+ + E LPG+ +W L + D+ +VLSF T VL++ G +EE
Sbjct: 457 LKHGLDVAEMVSSPLPGVPTNVWTLKLTEDDEYDSYIVLSFPNGTLVLSI-GETIEEVND 515
Query: 260 GGFTSDQQTFYCGNVDPRTVLQVTPSAAILISTESKARVSSWEPPNGKSISVVSCNKNQV 319
GF S T + +LQV P L + RV W P G++I + N+ QV
Sbjct: 516 TGFLSSGPTLAVQQLGNAGLLQVHPYG--LRHIRAADRVDEWPAPPGQTIVAATTNRRQV 573
Query: 320 LCA--TGCDVYY-LEVHGSEIKQLAHRALEYEVACLDIS--PLSNEETSSEPA---KAQL 371
+ A T VY+ L+ GS + +AL C+ I+ P TS +
Sbjct: 574 VIALSTAELVYFELDPEGSLSEYQEKKALPGNATCVTIAEVPEGRRRTSFLAVGCDNQTV 633
Query: 372 AAVGLWTDISARLLSLPSLEEVCKEPLGGEIIPRSILMTCFEGHCYLLVALGDGSMFYFS 431
+ + L D + LSL +L EI SI +L + L +G +
Sbjct: 634 SIISLEPDSTLDTLSLQALTAPPTSICLAEIFDTSIDKN--RATMFLNIGLMNGVLLRTV 691
Query: 432 LDPASGRLTDKKKVTLGTQPTVLKTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLRQ 491
+DP G L+D + LG +P L +V A S R ++Y+ L +
Sbjct: 692 VDPVDGSLSDTRLRFLGAKPPKLVRANVQGQPSVMAFSSRTWLLYTYQDMLQTQPLIYDT 751
Query: 492 VNHMCSLNAESYPDSLALATDSTFTFGTIDEI-QKLHIRTVPLGEAPRRIAYQESSQTFG 550
+ + SL+A PD L + +T I ++ +KL + L PR+ + F
Sbjct: 752 LEYAWSLSAAMCPDGLIGISGNTLRIFNIPKLGEKLKQDSTALTYTPRKFISHPFNSVFY 811
Query: 551 VI 552
+I
Sbjct: 812 MI 813
Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 71/151 (47%), Gaps = 14/151 (9%)
Query: 1060 KQGRIIIFHYDDGKLQQIAEKEIKGACYSMCEFNGKLLASINSTVRLFEWTNEKELRLEC 1119
+QGRI+ F L + +I + F G LLA I ++RL+E + LR +C
Sbjct: 931 EQGRILEF------LHKTKTDDIP---LCLAGFQGFLLAGIGKSLRLYEMGKKALLR-KC 980
Query: 1120 SHFNNIIALF-LKVKGDFILVGDLMRSLTLLQYKTMEGSFEEI-SRDYNPNWMTSIEILD 1177
+ A+ + V+G I+VGD+ S Y+++ I + D P W+T + +D
Sbjct: 981 ENNGFPTAVVTINVQGARIIVGDMQESTFYCVYRSIPTRQLLIFADDSQPRWITCVTSVD 1040
Query: 1178 DELFLGAENSYNLFICQKDSAATS--DEDRT 1206
E + N+FI + D + + D+D T
Sbjct: 1041 YETVACGDKFGNIFINRLDPSISEKVDDDPT 1071
>sp|Q52E49|RSE1_MAGO7 Pre-mRNA-splicing factor RSE1 OS=Magnaporthe oryzae (strain 70-15 /
ATCC MYA-4617 / FGSC 8958) GN=RSE1 PE=3 SV=2
Length = 1216
Score = 96.3 bits (238), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 130/552 (23%), Positives = 221/552 (40%), Gaps = 78/552 (14%)
Query: 62 FHLLRGFSSLGSLWNGWSERYLLGDLAGRLFMLLLEKEEKMDG--TFSVKEPKVELLGEI 119
H L+G S G+ + +LL G LF + ++ E +G T V+ K++ I
Sbjct: 297 MHKLKG--SAGAFF------FLLQTEDGDLFKVTIDMVEDAEGNPTGEVRRLKIKYFDTI 348
Query: 120 SIPECLTYLDNGVVFVGSRLGDSQLVKLNR------------------------------ 149
+ L L +G +FV S G+ + +
Sbjct: 349 PVSNNLCILKSGFLFVASEFGNHLFYQFEKLGDDDEELEFFSSDFPVDPKEPYEPVYFYP 408
Query: 150 SPDENGTYVSVMESFTNLAPIIDMVVVDLERQGQGQLVTCSGGFKEGSLRIIRNGIGIEE 209
P EN ++++ES ++ P++D+ V +L + Q+ T SG + R++++G+ + E
Sbjct: 409 RPTEN---LALVESIDSMNPLMDLKVANLTEEDAPQIYTVSGKGARSTFRMLKHGLEVNE 465
Query: 210 HACIDLPGI-KGIWALSIGSPKNLDNTLVLSFVGHTRVLTLSGAEVEETEMGGFTSDQQT 268
LPG +W + D +VLSF T VL++ G VEE GF S T
Sbjct: 466 IVASQLPGTPSAVWTTKLRRDDEYDAYIVLSFTNGTLVLSI-GETVEEVSDTGFLSSVPT 524
Query: 269 FYCGNVDPRTVLQVTPSAAILISTESKARVSSWEPPNGKSISVVSCNKNQVLCA--TGCD 326
+ ++QV P I V+ W P +SI + N+ QV A +G
Sbjct: 525 LAVQQLGDDGLVQVHPKG---IRHIRNGVVNEWSSPQHRSIVAAATNERQVAVALSSGEI 581
Query: 327 VYY-LEVHGSEIKQLAHRALEYEVACLDISPLSNEETSSEPAKAQLAAVGLWTDISARLL 385
VY+ ++ GS LA + E+ ++ LS E ++ AVG D + R+L
Sbjct: 582 VYFEMDTDGS----LAEYDEKKEMFGT-VTSLSLGEVPEGRLRSSYLAVGC-DDCTVRIL 635
Query: 386 SL---PSLEEVCKEPLGGEIIPRSILMTCFEGHC------YLLVALGDGSMFYFSLDPAS 436
SL +LE + L P ++ + E YL + L G LD +
Sbjct: 636 SLDPESTLESKSVQALTAA--PSALSIMSMEDSSSGGTTLYLHIGLNSGVYLRTVLDEVT 693
Query: 437 GRLTDKKKVTLGTQPTVLKTFRSLSTTNVFACSDRPTVIYSS--NHKLVFSNVNLRQVNH 494
G LTD ++ LG + L T V A S R + +S + +N ++
Sbjct: 694 GELTDTRQKFLGPKAVRLFQVSVQKRTCVLALSSRSWLGFSDPVTKGFTMTPLNYEELEW 753
Query: 495 MCSLNAESYPDSLALATDSTFTFGTIDEIQKLHI-RTVPLGEAPRRIAYQESSQTFGVIT 553
+ +E + + I+++ I +++PL PR++A + + F I
Sbjct: 754 GWNFVSEQCEEGMVGVNGQFLRIFAIEKLGDNVIQKSIPLTYTPRKLAKHPTQRIFYTI- 812
Query: 554 TRIDIQEADGST 565
EAD +T
Sbjct: 813 ------EADNNT 818
Score = 60.5 bits (145), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 50/195 (25%), Positives = 90/195 (46%), Gaps = 9/195 (4%)
Query: 1027 EYALSLISSKFG-EDPNTYFVLGTA---VVHPEENEPKQGRIIIFHYDDGKLQQIAEKEI 1082
E ALS+ F +D ++ V+GT VV+P + F D +L+ I + ++
Sbjct: 885 EAALSMAVVSFASQDGESFLVVGTGKDMVVNPRRFTEGYIHVYRFSEDGRELEFIHKTKV 944
Query: 1083 KGACYSMCEFNGKLLASINSTVRLFEWTNEKELRLECSHFNNIIALFLKVKGDFILVGDL 1142
+ ++ F G+L+A I +R+++ + LR + + + L +G I+VGD+
Sbjct: 945 EEPPTALLPFQGRLVAGIGRMLRIYDLGLRQLLRKAQAEVAPQLIVSLNTQGSRIIVGDV 1004
Query: 1143 MRSLTLLQYKTMEGSFEEISRDYNPNWMTSIEILDDELFLGAENSYNLFI--CQKDSAAT 1200
L + YK+ + D W T ++D + GA+ NL+I C + ++
Sbjct: 1005 QHGLIYVAYKSETNRLIPFADDTIARWTTCTTMVDYDSTAGADKFGNLWILRCPEKASQE 1064
Query: 1201 SDEDRTHLQEVGTVH 1215
SDE + EV VH
Sbjct: 1065 SDEPGS---EVHLVH 1076
>sp|Q9N4C2|CPSF1_CAEEL Probable cleavage and polyadenylation specificity factor subunit 1
OS=Caenorhabditis elegans GN=cpsf-1 PE=3 SV=2
Length = 1454
Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/131 (23%), Positives = 69/131 (52%), Gaps = 17/131 (12%)
Query: 785 DPEARVIGLRLYNGLFKIIPLEKDNFELKASSIRMEELE-----IQDVQFLHGCQNPTII 839
DP R +Y I+P +++ + + I +++++ I D+ FL G PTI+
Sbjct: 145 DPSNRCAACLVYGKHIAILPFHENSKRIHSYVIPLKQIDPRLDNIADMVFLDGYYEPTIL 204
Query: 840 CIHQDVN---GRHVKTHE--------ISLKEKEFTKTPWKQDNIEMEASLVIPVPEPLGG 888
+++ + GR ++ +++ +++F W+ N+ M+ S ++P+P+PLGG
Sbjct: 205 FLYEPIQTTPGRACVRYDTMCIMGVSVNIVDRQFAVV-WQTANLPMDCSQLLPIPKPLGG 263
Query: 889 AIIIGQESILY 899
A++ G +++Y
Sbjct: 264 ALVFGSNTVVY 274
Score = 38.1 bits (87), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 35/66 (53%), Gaps = 3/66 (4%)
Query: 81 RYLLGDLAGRLFMLLLEKEEKMDGTFSVKEPKVELLGEISIPECLTYLDNGVVFVGSRLG 140
R +G G LF+L L G +VK + + E SI LT G +FVGSRLG
Sbjct: 320 RIAVGSRDGDLFLLRLMTSS---GGGTVKSLEFSKVYETSIAYSLTVCAPGHLFVGSRLG 376
Query: 141 DSQLVK 146
DSQL++
Sbjct: 377 DSQLLE 382
>sp|Q10426|RIK1_SCHPO Chromatin modification-related protein rik1 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=rik1 PE=1 SV=2
Length = 1040
Score = 57.0 bits (136), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 89/422 (21%), Positives = 171/422 (40%), Gaps = 55/422 (13%)
Query: 125 LTYLDNGVVFVGSRLGDSQLVKLNRSPDENGTYVSVMESFTNLAPIIDMVVVDLERQGQG 184
L + G++F+GS+ +S+L+ L+ D ++S NL PI D++V L+ +
Sbjct: 308 LNSIHEGLLFIGSKNSESKLINLSTLKD--------VDSIPNLGPIHDLLV--LKNDIEK 357
Query: 185 QLVTCSGGFKEGSLRIIRNGIGIEEHACIDLPGIKGIWALSIGSPKNLDNTLVLSFVGHT 244
+ C+G + SL ++ + ++ + GI L P ++ L L F T
Sbjct: 358 SFLVCAGTPRNASLIYFQHALKLDILGQTKISGILRAMVL----PSYPEHKLFLGFPSET 413
Query: 245 RVLTLSGAEVEETEMG-GFTSDQQTFYCGNVDPRTVLQVTPSAAILISTESKARVSSWEP 303
+ E + E+ ++ ++T + V QVT + + + ++R+ E
Sbjct: 414 VAFNIK--EDFQLELDPSLSTKERTIALSGTNGEFV-QVTSTFLCIYDSAKRSRLVYIE- 469
Query: 304 PNGKSISVVSCNKNQ---VLCATGCDVYYLEVHGSEIKQLAHRALEYEVACLDISPLSNE 360
I+ +C + V+ T ++ + ++A + E E++CLD S
Sbjct: 470 ----KITNAACYQEYSAIVINGTALAIF------KKDTEVARKVFESEISCLDFS----- 514
Query: 361 ETSSEPAKAQLAAVGLWTDISARLLSLPSLEEV-CKEPLGGEIIPRSILMTCFEG----H 415
A+ Q+ VG W+ +L+ + C +PR+I++ EG
Sbjct: 515 ------AQFQIG-VGFWSK-QVMILTFSDNSSISCAFQTNVPSLPRNIIL---EGVGVDR 563
Query: 416 CYLLVALGDGSMFYFSLDPASGRLTDKKKVTLGTQPTVLKTFRSLSTTNVFACSDRPTVI 475
LLV+ G G + L + ++ K GT P + F T + +D P ++
Sbjct: 564 NLLLVSSGSGEFKSYVLFKNNLVFSETKH--FGTTPVSFRRFTMNIGTYIICNNDCPHMV 621
Query: 476 YSSNHKLVFSNVNLRQVNHMCSLNAESYPDSLALATDSTFTFGTIDEIQKLHIRTVPLGE 535
Y N L + +++ Q +C S D L + F ++ + +L R V L
Sbjct: 622 YGFNGALCYMPLSMPQSYDVCQFRDNSGKDFLISVSLGGLKFLQLNPLPELTPRKVLLEH 681
Query: 536 AP 537
P
Sbjct: 682 VP 683
>sp|Q5A7S5|RSE1_CANAL Pre-mRNA-splicing factor RSE1 OS=Candida albicans (strain SC5314 /
ATCC MYA-2876) GN=RSE1 PE=3 SV=1
Length = 1219
Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 80/335 (23%), Positives = 142/335 (42%), Gaps = 32/335 (9%)
Query: 153 ENGTYVSVMESFTNLAPIIDMVVVDLERQGQGQLVTCSGGFKEGSLRIIRNGIGIEEHAC 212
+N + V+E+ L+PI D ++D +LVT S ++ I +G+
Sbjct: 428 DNLALIDVLET---LSPITDSKIID------SKLVTLSS---HSYVKSITHGVPTTTLVE 475
Query: 213 IDLPGI-KGIWALSIGSPKNLDNTLVLSFVGHTRVLTLS-GAEVEETEMGGFTSDQQTFY 270
LP I+ + D LV+S ++ L LS G VE+ E F DQ T
Sbjct: 476 SPLPITPTDIFTTKLSLESANDEYLVISSSLSSKTLVLSIGEVVEDVEDSEFVLDQPTIA 535
Query: 271 CGNVDPRTVLQVTPSAAILIST-ESKARVSSWEPPNGKSISVVSCNKNQVLCA-TGCDVY 328
V +V+Q+ + + T + + W PP G +I+ + N QVL A + V
Sbjct: 536 VQQVGIASVVQIYSNGIKHVRTVNGNKKTTDWFPPAGITITHATTNNQQVLIALSNLSVV 595
Query: 329 YLEVHGSEIKQLAHRALEYEVACLDISPLSNEETSSEPAKAQLAAVGLWTDISARLLSLP 388
Y E+ ++ QL E+A I+ ++ +E SE K+ A +G +D + +++SL
Sbjct: 596 YFEIDATD-DQLIEYQDRLEIATT-ITAMAIQENISE--KSPFAIIGC-SDETIQVVSLQ 650
Query: 389 SLEEVCKEPLGGEIIPRSILMTCF------EGHCYLLVALGDGSMFYFSLDPASGRLTDK 442
E C E + + + E H + + + +G +D +G L++
Sbjct: 651 --EHNCLEIKSLQALSANSSSLKMLKSSGKETHVH--IGMENGVYARIKIDTINGNLSNS 706
Query: 443 KKVTLGTQPTVLKTFR-SLSTTNVFACSDRPTVIY 476
+ +G++P L + S + A S P + Y
Sbjct: 707 RVKYIGSKPVSLSVIKFSNEIEGILAISSAPWISY 741
Score = 37.7 bits (86), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 41/213 (19%), Positives = 91/213 (42%), Gaps = 14/213 (6%)
Query: 1009 IIDQNTFEILHAHQLFPGEYALSLISSKFGED-----PNTYFVLGTAV---VHPEENEPK 1060
++D + +++ + QL E +S+ + F + P ++ V+G + P N
Sbjct: 868 VVDSKSNQVIQSLQLDGNESIVSMSAVSFNKTSTPSVPASHLVVGVCTNQTILP--NSYD 925
Query: 1061 QGRIIIFHYDDGKLQQIAEKEIKGACYSMCEFNGKLLASINSTVRLFEWTNEKELRLECS 1120
+ + F LQ + + E+ + F KLL + + +RL++ ++ L+ +
Sbjct: 926 KSYLYTFKIGKKHLQLVHKTELDHIPQVLENFQDKLLVASGNHIRLYDIGQKQLLKKSTT 985
Query: 1121 --HFNNIIALFLKVKGDFILVGDLMRSLTLLQYKTMEGSFEEISRDYNPNWMTSIEILDD 1178
F+ I + I+ S+ ++ + F + D +TSI LD
Sbjct: 986 IIDFSTNINKIIPQTNRIIICDSHKSSIVFAKFDESQNQFVPFADDVMKRQITSIMNLDI 1045
Query: 1179 ELFLGAENSYNLFICQ--KDSAATSDEDRTHLQ 1209
+ +G + N+F+ + +D + +D+D T L+
Sbjct: 1046 DTLIGGDKFGNIFVTRIDEDISKQADDDWTILK 1078
>sp|Q9EPU4|CPSF1_MOUSE Cleavage and polyadenylation specificity factor subunit 1 OS=Mus
musculus GN=Cpsf1 PE=1 SV=1
Length = 1441
Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 75/163 (46%), Gaps = 16/163 (9%)
Query: 1044 YFVLGTAVVHPEENEPKQGRIIIFH-----------YDDGKLQQIAEKEIKGACYSMCEF 1092
Y GT ++ EE + GRI+I K + + EKE KG ++C
Sbjct: 1118 YVAAGTCLMQGEEVTCR-GRILIMDVIEVVPEPGQPLTKNKFKVLYEKEQKGPVTALCHC 1176
Query: 1093 NGKLLASINSTVRLFEWTNEKELRLECSHFNNIIALFLKVKGDFILVGDLMRSLTLLQYK 1152
NG L+++I + L+ + + I + VK +FIL D+M+S++LL+Y+
Sbjct: 1177 NGHLVSAIGQKIFLWSLRASELTGMAFIDTQLYIHQMISVK-NFILAADVMKSISLLRYQ 1235
Query: 1153 TMEGSFEEISRDYNPNWMTSIEILDDEL---FLGAENSYNLFI 1192
+ +SRD P + S++ + D FL ++ NL +
Sbjct: 1236 EESKTLSLVSRDAKPLEVYSVDFMVDNAQLGFLVSDRDRNLMV 1278
Score = 42.7 bits (99), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 31/146 (21%), Positives = 62/146 (42%), Gaps = 30/146 (20%)
Query: 784 IDPEARVIGLRLYNGLFKIIPLEKDN--------------------FELKASSIRMEELE 823
+DP+ R + +Y ++P +++ + + ++ + L
Sbjct: 143 VDPDGRCAAMLIYGTRLVVLPFRRESLAEEHEGLMGEGQRSSFLPSYIIDVRALDEKLLN 202
Query: 824 IQDVQFLHGCQNPTIICI---HQDVNGRHVKTHE------ISLK-EKEFTKTPWKQDNIE 873
I D+QFLHG PT++ + +Q GR + ISL ++ W ++
Sbjct: 203 IIDLQFLHGYYEPTLLILFEPNQTWPGRVAVRQDTCSIVAISLNITQKVHPVIWSLTSLP 262
Query: 874 MEASLVIPVPEPLGGAIIIGQESILY 899
+ + + VP+P+GG +I S+LY
Sbjct: 263 FDCTQALAVPKPIGGVVIFAVNSLLY 288
Score = 41.6 bits (96), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 54/125 (43%), Gaps = 26/125 (20%)
Query: 185 QLVTCSGGFKEGSLRIIRNGIGIEEHACIDLPGIKGIWALSIGSPKNLDNT--------- 235
++V CSG K G+L +++ I + +LPG +W + K + T
Sbjct: 498 EIVVCSGYGKNGALSVLQKSIRPQVVTTFELPGCYDMWTVIAPVRKEEEETPKAESTEQE 557
Query: 236 ---------------LVLSFVGHTRVLTLSGAEVEETEMGGFTSDQQTFYCGNV-DPRTV 279
L+LS T +L +G E+ E + GF + T + GN+ D R +
Sbjct: 558 PSAPKAEEDGRRHGFLILSREDSTMILQ-TGQEIMELDTSGFATQGPTVFAGNIGDNRYI 616
Query: 280 LQVTP 284
+QV+P
Sbjct: 617 VQVSP 621
>sp|Q10570|CPSF1_HUMAN Cleavage and polyadenylation specificity factor subunit 1 OS=Homo
sapiens GN=CPSF1 PE=1 SV=2
Length = 1443
Score = 54.3 bits (129), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 75/163 (46%), Gaps = 16/163 (9%)
Query: 1044 YFVLGTAVVHPEENEPKQGRIIIFH-----------YDDGKLQQIAEKEIKGACYSMCEF 1092
Y GT ++ EE + GRI+I K + + EKE KG ++C
Sbjct: 1120 YVAAGTCLMQGEEVTCR-GRILIMDVIEVVPEPGQPLTKNKFKVLYEKEQKGPVTALCHC 1178
Query: 1093 NGKLLASINSTVRLFEWTNEKELRLECSHFNNIIALFLKVKGDFILVGDLMRSLTLLQYK 1152
NG L+++I + L+ + + I + VK +FIL D+M+S++LL+Y+
Sbjct: 1179 NGHLVSAIGQKIFLWSLRASELTGMAFIDTQLYIHQMISVK-NFILAADVMKSISLLRYQ 1237
Query: 1153 TMEGSFEEISRDYNPNWMTSIEILDDEL---FLGAENSYNLFI 1192
+ +SRD P + S++ + D FL ++ NL +
Sbjct: 1238 EESKTLSLVSRDAKPLEVYSVDFMVDNAQLGFLVSDRDRNLMV 1280
Score = 42.0 bits (97), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 30/146 (20%), Positives = 62/146 (42%), Gaps = 30/146 (20%)
Query: 784 IDPEARVIGLRLYNGLFKIIPLEKDN--------------------FELKASSIRMEELE 823
+DP+ R + +Y ++P +++ + + ++ + L
Sbjct: 143 VDPDGRCAAMLVYGTRLVVLPFRRESLAEEHEGLVGEGQRSSFLPSYIIDVRALDEKLLN 202
Query: 824 IQDVQFLHGCQNPTIICI---HQDVNGRHVKTHE------ISLK-EKEFTKTPWKQDNIE 873
I D+QFLHG PT++ + +Q GR + ISL ++ W ++
Sbjct: 203 IIDLQFLHGYYEPTLLILFEPNQTWPGRVAVRQDTCSIVAISLNITQKVHPVIWSLTSLP 262
Query: 874 MEASLVIPVPEPLGGAIIIGQESILY 899
+ + + VP+P+GG ++ S+LY
Sbjct: 263 FDCTQALAVPKPIGGVVVFAVNSLLY 288
>sp|Q10569|CPSF1_BOVIN Cleavage and polyadenylation specificity factor subunit 1 OS=Bos
taurus GN=CPSF1 PE=1 SV=1
Length = 1444
Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 75/163 (46%), Gaps = 16/163 (9%)
Query: 1044 YFVLGTAVVHPEENEPKQGRIIIFH-----------YDDGKLQQIAEKEIKGACYSMCEF 1092
Y GT ++ EE + GRI+I K + + EKE KG ++C
Sbjct: 1121 YVAAGTCLMQGEEVTCR-GRILIMDVIEVVPEPGQPLTKNKFKVLYEKEQKGPVTALCHC 1179
Query: 1093 NGKLLASINSTVRLFEWTNEKELRLECSHFNNIIALFLKVKGDFILVGDLMRSLTLLQYK 1152
NG L+++I + L+ + + I + VK +FIL D+M+S++LL+Y+
Sbjct: 1180 NGHLVSAIGQKIFLWSLRASELTGMAFIDTQLYIHQMISVK-NFILAADVMKSISLLRYQ 1238
Query: 1153 TMEGSFEEISRDYNPNWMTSIEILDDEL---FLGAENSYNLFI 1192
+ +SRD P + S++ + D FL ++ NL +
Sbjct: 1239 EESKTLSLVSRDAKPLEVYSVDFMVDNAQLGFLVSDRDRNLMV 1281
Score = 43.9 bits (102), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 57/125 (45%), Gaps = 26/125 (20%)
Query: 185 QLVTCSGGFKEGSLRIIRNGIGIEEHACIDLPGIKGIWAL-------------------S 225
++V CSG K G+L +++ I + +LPG +W +
Sbjct: 501 EIVVCSGYGKNGALSVLQKSIRPQVVTTFELPGCYDMWTVIAPVRKEQEETLKGEGTEPE 560
Query: 226 IGSPKNLDNT-----LVLSFVGHTRVLTLSGAEVEETEMGGFTSDQQTFYCGNV-DPRTV 279
G+P+ D+ L+LS T +L +G E+ E + GF + T + GN+ D R +
Sbjct: 561 PGAPEAEDDGRRHGFLILSREDSTMILQ-TGQEIMELDASGFATQGPTVFAGNIGDNRYI 619
Query: 280 LQVTP 284
+QV+P
Sbjct: 620 VQVSP 624
Score = 43.1 bits (100), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 31/146 (21%), Positives = 62/146 (42%), Gaps = 30/146 (20%)
Query: 784 IDPEARVIGLRLYNGLFKIIPLEKDN--------------------FELKASSIRMEELE 823
+DP+ R + +Y ++P +++ + + ++ + L
Sbjct: 146 VDPDGRCAAMLIYGTRLVVLPFRRESLAEEHEGLVGEGQRSSFLPSYIIDVRALDEKLLN 205
Query: 824 IQDVQFLHGCQNPTIICI---HQDVNGRHVKTHE------ISLK-EKEFTKTPWKQDNIE 873
I D+QFLHG PT++ + +Q GR + ISL ++ W ++
Sbjct: 206 IVDLQFLHGYYEPTLLILFEPNQTWPGRVAVRQDTCSIVAISLNITQKVHPVIWSLTSLP 265
Query: 874 MEASLVIPVPEPLGGAIIIGQESILY 899
+ + + VP+P+GG +I S+LY
Sbjct: 266 FDCTQALAVPKPIGGVVIFAVNSLLY 291
>sp|A8XPU7|CPSF1_CAEBR Probable cleavage and polyadenylation specificity factor subunit 1
OS=Caenorhabditis briggsae GN=cpsf-1 PE=3 SV=1
Length = 1454
Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/138 (23%), Positives = 69/138 (50%), Gaps = 17/138 (12%)
Query: 778 NGIIAIIDPEARVIGLRLYNGLFKIIPLEKDNFELKASSIRMEELE-----IQDVQFLHG 832
N I DP R +Y I+P +++ + + I +++++ + D+ FL G
Sbjct: 138 NPPIVRTDPANRCAASLVYGKHIAILPFHENSKRILSYIIPLKQIDPRLDNVADMVFLEG 197
Query: 833 CQNPTIICIH---QDVNGRHVKTHE--------ISLKEKEFTKTPWKQDNIEMEASLVIP 881
PTI+ ++ Q GR ++ +++ +++F W+ N+ M+ + ++
Sbjct: 198 YYEPTILFLYEPLQTTPGRACVRYDTMCIMGVSVNIVDRQFAVV-WQTANLPMDCNSLLS 256
Query: 882 VPEPLGGAIIIGQESILY 899
+P+PLGGA++ G +I+Y
Sbjct: 257 IPKPLGGAVVFGSNTIVY 274
Score = 35.4 bits (80), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 35/66 (53%), Gaps = 3/66 (4%)
Query: 81 RYLLGDLAGRLFMLLLEKEEKMDGTFSVKEPKVELLGEISIPECLTYLDNGVVFVGSRLG 140
R +G G L++L L G +VK + + + SI LT G +FVGSRLG
Sbjct: 320 RIAVGSREGDLYLLRLVTSS---GGATVKSLEFSKVCDTSIAFTLTVCAPGHLFVGSRLG 376
Query: 141 DSQLVK 146
DSQL++
Sbjct: 377 DSQLLE 382
>sp|Q6CAH5|RSE1_YARLI Pre-mRNA-splicing factor RSE1 OS=Yarrowia lipolytica (strain CLIB
122 / E 150) GN=RSE1 PE=3 SV=1
Length = 1143
Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 109/468 (23%), Positives = 180/468 (38%), Gaps = 57/468 (12%)
Query: 125 LTYLDNGVVFVGSRLGDSQLVKLNRSPDENGT-----------YVSVMESFTNLAPIIDM 173
LT L + + S GDS ++ D++ Y++V ++ L P+ D
Sbjct: 347 LTILKSAHMVCLSEQGDSHMMFFESLGDDDAPENVYDVISPSPYLTVTQTLFELKPVFDS 406
Query: 174 VV----VDLERQGQGQLVTCSGGFKEGSLRIIRNGIGIEEHACIDLPGIKG-IWALSIGS 228
VV + G V G L++I + + LP +W + G+
Sbjct: 407 VVGVNTTSSDHVGPVPNVLSLISATRGGLKLISHALKPSIIVASPLPEPPSKLWTMRDGA 466
Query: 229 PKNLDNTLVLSFVGHTRVLTLSGAEVEETEMGGFTSDQQTFYCGNVDPRTVLQVTPSAAI 288
D +VLS+ T VL + G V ET G T D+ T +CG+V V +T +
Sbjct: 467 --GSDKYIVLSYANATLVLEI-GDSVVETTSSGLTLDKPTLHCGSVGSSYVQVMTDGMNV 523
Query: 289 L-ISTESKAR---VSSWEPPNGKSISVVSCNKNQVLCATGCDVYYLEVHGSEIKQLAHRA 344
+ +S E + + W P+G+ I S + VL T Y+ + GSE+
Sbjct: 524 IPMSREGSSESLPATKWTAPSGQVICASSSSHQVVLGLTSSLFYFEDTPGSELSA----- 578
Query: 345 LEYEVACLDISPLSNEETSSEPA---KAQLAAVGLWTDISARLLSLPSLEEVCKEPLGGE 401
Y+ A SP + + PA ++ AV D + R++S+ + G
Sbjct: 579 --YDGAYELSSPPTAVAVAPVPAGRVRSPFVAVAT-DDETVRIVSVDPESMFETVAVQGL 635
Query: 402 IIPRSILMTCFEGHC-YLLVALGDGSMFYFSLDPASGRLTDKKK------------VTLG 448
+ S L G YL + L +G LDP +G + VT G
Sbjct: 636 MATASSLALLSVGQVLYLHMGLANGVYVRVELDPLTGEIVGSWSKFVGLGRLSVVPVTCG 695
Query: 449 TQPTVLKTFRSLSTT--NVFACSDR--PTVIYSSNHKLVFS--NVNLRQVNHMCSLNAES 502
+ ++L + R + T +V A SD PT N F+ ++ ++ S + +
Sbjct: 696 GEESILVSSRGVKTCLGHVNATSDTWVPT---GGNSAPFFALDAISGEPLDLAHSFHTQD 752
Query: 503 YPDSLALATDSTFTFGTIDEIQKLHIRTVPL-GEAPRRIAYQESSQTF 549
P + ST T++ QK V L G A R I + ++ T
Sbjct: 753 CPHGVIGVAGSTLKIFTVNTAQKWTENEVKLEGTAKRLIQHDATTLTI 800
Score = 40.8 bits (94), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 55/121 (45%), Gaps = 8/121 (6%)
Query: 1031 SLISSKFGEDPNTYFVLGTAVVHPEENEPKQGRIIIFHYDDGKLQQIAEKEIKGACYSMC 1090
S+ FG D YF +G + G I IF L + E++ ++C
Sbjct: 827 SICEVMFG-DGKRYFAVGGSRDGSPGTSGTSGYISIF--SSSSLGHVHTTEVEAPPLALC 883
Query: 1091 EFNGKLLASINSTVRLFEWTNEKELR---LECSHFNNIIALFLKVKGDFILVGDLMRSLT 1147
+NG L+A I S VRL+ ++ LR +E S +A F + + VGD+ +S+T
Sbjct: 884 AYNGLLVAGIGSQVRLYALGLKQVLRKAQIELSKRVTCLAHF--AGSNRVAVGDIRQSVT 941
Query: 1148 L 1148
+
Sbjct: 942 V 942
>sp|Q6BYK1|RSE1_DEBHA Pre-mRNA-splicing factor RSE1 OS=Debaryomyces hansenii (strain ATCC
36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968)
GN=RSE1 PE=3 SV=2
Length = 1256
Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 54/222 (24%), Positives = 95/222 (42%), Gaps = 35/222 (15%)
Query: 1009 IIDQNTFEILHAHQLFPGEYALSLISSKFGED-------------------PNTYF--VL 1047
+ID N EI+ +L E A+SL +F PN+Y L
Sbjct: 885 VIDFNNQEIVQTIELPKNESAISLCRLQFESQQTKNQEYLIIGTTQDQKFLPNSYSNNYL 944
Query: 1048 GTAVVHPEENEPK-QGRIIIFHYDDGKLQQIAEKEIKGACYSMCEFNGKLLASINSTVRL 1106
T ++ N+ K Q I+ F + + E+ ++ FNG+LL +++ +RL
Sbjct: 945 YTFTINKSSNKNKSQNEILEF---------VHKTELDYQPTAIIPFNGRLLVGMSNFLRL 995
Query: 1107 FEWTNEKELRLECS---HFNNIIALFLKVKGDFILVGDLMRSLTLLQYKTMEGSFEEISR 1163
++ + LR S + NII L + G I+VGD S T ++Y + E F +
Sbjct: 996 YDLGQRQLLRKASSNIEYLKNIIRLTHQ-GGSRIVVGDSSMSTTFVKYDSTENQFIPFAD 1054
Query: 1164 DYNPNWMTSIEILDDELFLGAENSYNLFICQKDSAATSDEDR 1205
D +T++ LD + +G + N+F+ + + D+
Sbjct: 1055 DIMKRQITALVTLDYDTIIGGDKFGNIFVSRVPETISQQSDK 1096
Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 87/346 (25%), Positives = 140/346 (40%), Gaps = 31/346 (8%)
Query: 153 ENGTYVSVMESFTNLAPIIDMVVVDLER----QGQGQLVTCSGGFKEGSLRIIRNGIGIE 208
EN V +ME+ L PI D +++ R QL S L+ + +GI
Sbjct: 404 ENLALVDIMET---LNPITDGALIETLRPEVPDPFKQLTALSS---HSYLKTLTHGISTN 457
Query: 209 EHACIDLPGIK--GIWALSIGSPKNLDNTLVLSFVGHTRVLTLS-GAEVEETEMGGFTSD 265
LP IK I I + D LV+S ++ L LS G VEE F ++
Sbjct: 458 TVVSSPLP-IKPTAIHTTRIFAESANDEYLVISSTLSSQTLVLSIGEVVEEVNDSQFVTN 516
Query: 266 QQTFYCGNVDPRTVLQVTPSAAILISTESK-----ARVSSWEPPNGKSISVVSCNKNQVL 320
+ T V +V+Q+ + I + + + W PP G SI S N QV+
Sbjct: 517 EPTINVQQVGKSSVVQIYSNGIRHIKHTMRNDTIEKKYTDWYPPAGISIIQASTNNEQVI 576
Query: 321 CA-TGCDVYYLEV--HGSEIKQLAHRALEYEVACLDISPLSNEETSSEPAKAQLAAVGLW 377
+ ++ Y E+ H ++ + R LE + +S+ S K+ A VG
Sbjct: 577 IGLSNREICYFEIDPHDDQLVEYQER-LEMSGGSISALAISSSSISKLQRKSSYAIVGC- 634
Query: 378 TDISARLLSLPS---LEEVCKEPLGGEIIPRSILMTCFEGHCYLLVALGDGSMFYFSLDP 434
+D + + +SL LE V + L SI M + + + +G ++D
Sbjct: 635 SDETIQAISLKPHNCLEIVTLQALSAN--SSSIAMVPHGYSTSVHIGMENGLYVRVTIDE 692
Query: 435 ASGRLTDKKKVTLGTQPTVLKT--FRSLSTTNVFACSDRPTVIYSS 478
+G+L+D + LG++P L L + A S RP + Y S
Sbjct: 693 ITGKLSDTRIQFLGSKPVQLSVIGLPQLQQNGLLAISSRPWIGYYS 738
>sp|Q9FGR0|CPSF1_ARATH Cleavage and polyadenylation specificity factor subunit 1
OS=Arabidopsis thaliana GN=CPSF160 PE=1 SV=2
Length = 1442
Score = 50.8 bits (120), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 67/287 (23%), Positives = 107/287 (37%), Gaps = 84/287 (29%)
Query: 83 LLGDLAGRLFMLLLEKEEKMDGTFSVKEPKVELLGEISIPECLTYLDNGVVFVGSRLGDS 142
LL +G L +L L + + + + K +L +T + N + F+GSRLGDS
Sbjct: 381 LLSTKSGELLLLTLIYDGRAVQRLDLSKSKASVLASD-----ITSVGNSLFFLGSRLGDS 435
Query: 143 QLVKLN------------RSPDEN---------------GTY------------------ 157
LV+ + R DE+ T+
Sbjct: 436 LLVQFSCRSGPAASLPGLRDEDEDIEGEGHQAKRLRMTSDTFQDTIGNEELSLFGSTPNN 495
Query: 158 ---------VSVMESFTNLAPIIDMV----------VVDLERQGQGQLVTCSGGFKEGSL 198
+V +S N+ P+ D + +Q +LV CSG K G+L
Sbjct: 496 SDSAQKSFSFAVRDSLVNVGPVKDFAYGLRINADANATGVSKQSNYELVCCSGHGKNGAL 555
Query: 199 RIIRNGIGIEEHACIDLPGIKGIWALSIGSPK--NLDNT------------LVLSFVGHT 244
++R I E ++LPG KGIW + S + N D++ L++S T
Sbjct: 556 CVLRQSIRPEMITEVELPGCKGIWTVYHKSSRGHNADSSKMAADEDEYHAYLIISLEART 615
Query: 245 RVLTLSGAEVEETEMGGFTSDQQTFYCGNV-DPRTVLQVTPSAAILI 290
VL + E TE + +T GN+ R V+QV A ++
Sbjct: 616 MVLETADLLTEVTESVDYYVQGRTIAAGNLFGRRRVIQVFEHGARIL 662
Score = 48.5 bits (114), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 74/151 (49%), Gaps = 26/151 (17%)
Query: 1030 LSLISSKFGEDPNTYFVLGTAVVHPEENEPKQGRIIIFHY----DDGK--LQQIAEKEIK 1083
++L+++ GE+ T +GTA V E+ + GR+++F + D+ + + ++ +E+K
Sbjct: 1117 VTLLNASTGEN-ETLLAVGTAYVQGEDVAAR-GRVLLFSFGKNGDNSQNVVTEVYSRELK 1174
Query: 1084 GACYSMCEFNGKLLASINSTVRLFEWTNEKELRLECSHFNNIIALF---------LKVKG 1134
GA ++ G LL S + L +W N EL N +A F + V
Sbjct: 1175 GAISAVASIQGHLLISSGPKIILHKW-NGTEL--------NGVAFFDAPPLYVVSMNVVK 1225
Query: 1135 DFILVGDLMRSLTLLQYKTMEGSFEEISRDY 1165
FIL+GD+ +S+ L +K +++D+
Sbjct: 1226 SFILLGDVHKSIYFLSWKEQGSQLSLLAKDF 1256
Score = 43.1 bits (100), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 50/106 (47%), Gaps = 13/106 (12%)
Query: 817 IRMEELE---IQDVQFLHGCQNPTIICIHQDVN---GR-HVKTHEISLKEKEFTKT---- 865
I + +LE ++D FLHG P I+ + ++ + GR K H L T
Sbjct: 239 INLRDLEMKHVKDFVFLHGYIEPVIVILQEEEHTWAGRVSWKHHTCVLSALSINSTLKQH 298
Query: 866 --PWKQDNIEMEASLVIPVPEPLGGAIIIGQESILYHSGKSYVAVA 909
W N+ +A ++ VP P+GG +++ +I YHS + A+A
Sbjct: 299 PVIWSAINLPHDAYKLLAVPSPIGGVLVLCANTIHYHSQSASCALA 344
>sp|Q6CXH8|RSE1_KLULA Pre-mRNA-splicing factor RSE1 OS=Kluyveromyces lactis (strain ATCC
8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 /
WM37) GN=RSE1 PE=3 SV=1
Length = 1269
Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 70/309 (22%), Positives = 129/309 (41%), Gaps = 35/309 (11%)
Query: 158 VSVMESFTNLAPIIDMVVVDLERQGQGQLVTCSGGFKEGSLRIIRNGIGIEEHACIDLPG 217
+S+++S T+L P+ L + + +L + + + EE LP
Sbjct: 421 LSILDSLTSLNPL-----TSFHASNSTPLTILAAANQTENLVKLTSAVDFEELISTTLPR 475
Query: 218 IKG-IWALSIGSPKNLDNTLV-LSFVGHTRVLTLSGAEVEETEMGG----FTSDQQTFYC 271
I +W + I PKN ++L+ LS T +L + VE+ GG F ++ + +
Sbjct: 476 IPSKLWTVRI--PKNETHSLIFLSMETSTTILKIHEGTVED--FGGDSNPFILNKPSLFV 531
Query: 272 GNVDPRTVLQVTPSAAILISTESKARVSS---WEPPNGKSISVVSCNKNQVLCA-TGCDV 327
G + R+++QVT + I + W PP G I CN+ Q++ A T ++
Sbjct: 532 GAMVQRSIIQVTRDCLLQIIEMHDGPYTKKLEWYPPAGVGIVTAFCNETQLVVALTNHEI 591
Query: 328 YYLEVHGSEIKQLAHRALEYEVACLDISPLSNEETSSEPAKAQLAAVGLWTDISARLLSL 387
Y E+ + +L R +E + I+ L+ + K+ +G D S ++L+L
Sbjct: 592 CYFEIIEDSLNELQDR-VEMDSTVNSIALLAGQ-------KSGYCVLGC-EDSSLQILNL 642
Query: 388 ----PSLEEVCK-EPLGGEIIPRSILMTCFEGHCYLLVALGDGSMFYFSLDPASGRLTDK 442
P +C + L + P S+L + V + G L+ G + D
Sbjct: 643 QSKHPDFFTICAIQSLISK--PHSLLFMRDTSDLKIHVGMKSGVYLSSKLNINDGTVFDV 700
Query: 443 KKVTLGTQP 451
+ +GT+P
Sbjct: 701 RTRFVGTKP 709
>sp|Q6FLQ6|RSE1_CANGA Pre-mRNA-splicing factor RSE1 OS=Candida glabrata (strain ATCC 2001
/ CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=RSE1
PE=3 SV=1
Length = 1296
Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 100/419 (23%), Positives = 172/419 (41%), Gaps = 55/419 (13%)
Query: 69 SSLGSLWNGWSERYLLGDLAGRLFMLLLEKEEKMDGTFSVKEPKVELLGEISIPECLTYL 128
S L L N LL G LF +++ E+ K + + IS L
Sbjct: 289 SDLQILKNNVGFLLLLQTNTGHLFKVIIFPNEEDRNRPIAKLGYFDKVKHISNSSKLHIF 348
Query: 129 DNGVVFVGSRLG-DSQLVKLNRSPDENGTY---------VSVMESFTNLAPII------- 171
+NG +++ S+ D + D + Y +SV+ TN+ PI
Sbjct: 349 NNGSMYINSQFNYDHVYLNFESIGDNDENYDKIDNENENISVISKHTNINPIALNLCLME 408
Query: 172 DMVVVDLERQGQGQLVTCSGGFKEGSLRIIRNGIGIEEHACIDLP-GIKGIWALSIGSPK 230
+M + + QG G T S + IIRN I ++E+ LP G+ I+ + +
Sbjct: 409 NMPLTFMHFQG-GNRTTDSE-----KVNIIRNAIPLKEYVSSPLPQGVSNIFTIKT-QYQ 461
Query: 231 NLDNTLVLSFVGHTRV-LTLSGAEVEETEMGGFT---SDQQTFYCGNVDPRTVLQVTPSA 286
+ + + L+ + T V L ++ +E+ T D T + + +++QV
Sbjct: 462 SYHSFIFLTMINFTTVILKIADDSIEQYIPASDTFKLKDDMTIHVATMGDNSIIQVCKDE 521
Query: 287 AILISTESKARVS-----SWEPPNGKSI-SVVSCNKNQVLCATGCDVYYLEVHGSEIKQL 340
I +SK + W PP G SI S VS +L + ++ YL++ + + +
Sbjct: 522 FRQILLDSKDEENFKMNLKWYPPAGVSILSAVSNFSQLILALSNNEIVYLQLENNTLIEY 581
Query: 341 AHR-ALEYEVACLDISPLSNEETSSEPAKAQLAAVGLWTDISARLLSLP------SLEEV 393
+R L + L L N+ T K+++ AVG +D +LSL S E V
Sbjct: 582 KNRPELPDVITSL---ALLNDNTK----KSEILAVGT-SDNMVNVLSLEIVDEAISFETV 633
Query: 394 CKEPLGGEIIPRSILMTCFEGHCYLLVALG--DGSMFYFSLDPASGRLTDKKKVTLGTQ 450
+ L IP S+L+ +GH + + +G DGS LD + + + + LGT+
Sbjct: 634 VFQALDA--IPSSLLILN-QGHKLVNLHIGVEDGSYLVNRLDLRNMSINNILRKQLGTR 689
>sp|Q7XWP1|CPSF1_ORYSJ Probable cleavage and polyadenylation specificity factor subunit 1
OS=Oryza sativa subsp. japonica GN=Os04g0252200 PE=3 SV=2
Length = 1441
Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 60/128 (46%), Gaps = 7/128 (5%)
Query: 1043 TYFVLGTAVVHPEENEPKQGRIIIFHYDDGKLQQ-----IAEKEIKGACYSMCEFNGKLL 1097
T +GTA V E+ + GR+++F + + Q + KE KGA ++ G LL
Sbjct: 1127 TLLAIGTAYVLGEDVAAR-GRVLLFSFTKSENSQNLVTEVYSKESKGAVSAVASLQGHLL 1185
Query: 1098 ASINSTVRLFEWTNEKELRLECSHFNNIIALFLKVKGDFILVGDLMRSLTLLQYKTMEGS 1157
+ + L +WT EL + + + L + +F+L GD+ +S+ L +K
Sbjct: 1186 IASGPKITLNKWTG-AELTAVAFYDAPLHVVSLNIVKNFVLFGDIHKSIYFLSWKEQGSQ 1244
Query: 1158 FEEISRDY 1165
+++D+
Sbjct: 1245 LSLLAKDF 1252
Score = 44.3 bits (103), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 39/171 (22%), Positives = 75/171 (43%), Gaps = 32/171 (18%)
Query: 823 EIQDVQFLHGCQNPTIICIHQD---VNGRHVKTHE--------ISLKEKEFTKTPWKQDN 871
++D F+HG P ++ +H+ GR + H IS+ K+ W N
Sbjct: 250 HVKDFAFVHGYIEPVLVILHEQEPTWAGRILSKHHTCMISAFSISMTLKQH-PVIWSAAN 308
Query: 872 IEMEASLVIPVPEPLGGAIIIGQESILYHSGKSYVAV-----------APQIIKSSTIVC 920
+ +A ++ VP P+ G ++I SI YHS + ++ +P+I KS+ V
Sbjct: 309 LPHDAYQLLAVPPPISGVLVICANSIHYHSQSTSCSLDLNNFSSHPDGSPEISKSNFQV- 367
Query: 921 YAKVDANGERYLLGDL------AGRLFMLLLEKEEKMDGTFSVKEPKVELL 965
++DA +L D+ AG + +L + + ++ + + K +L
Sbjct: 368 --ELDAAKATWLSNDIVMFSTKAGEMLLLTVVYDGRVVQRLDLMKSKASVL 416
Score = 40.4 bits (93), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 61/274 (22%), Positives = 98/274 (35%), Gaps = 80/274 (29%)
Query: 88 AGRLFMLLLEKEEKMDGTFSVKEPKVELLGEISIPECLTYLDNGVVFVGSRLGDSQLVKL 147
AG + +L + + ++ + + K +L +T + N F+GSRLGDS LV+
Sbjct: 388 AGEMLLLTVVYDGRVVQRLDLMKSKASVLSS-----AVTSIGNSFFFLGSRLGDSLLVQF 442
Query: 148 N--------------RSPDENG-------------------------------------- 155
+ RS D G
Sbjct: 443 SYCASKSVLQDLTNERSADIEGDLPFSKRLKRIPSDVLQDVTSVEELSFQNIIAPNSLES 502
Query: 156 ----TYVSVMESFTNLAPIIDMV----------VVDLERQGQGQLVTCSGGFKEGSLRII 201
+Y+ V ++ N+ P+ D + +Q +LV CSG K GSL ++
Sbjct: 503 AQKISYI-VRDALINVGPLKDFSYGLRANADPNAMGNAKQSNYELVCCSGHGKNGSLSVL 561
Query: 202 RNGIGIEEHACIDLPGIKGIWALSIGSPKNL---DNT----LVLSFVGHTRVLTLSGAEV 254
+ I + ++LP +GIW + S + DN L++S T VL
Sbjct: 562 QQSIRPDLITEVELPSCRGIWTVYYKSYRGQMAEDNEYHAYLIISLENRTMVLETGDDLG 621
Query: 255 EETEMGGFTSDQQTFYCGNV-DPRTVLQVTPSAA 287
E TE + T GN+ R V+QV A
Sbjct: 622 EVTETVDYFVQASTIAAGNLFGRRRVIQVYGKGA 655
>sp|Q9V726|CPSF1_DROME Cleavage and polyadenylation specificity factor subunit 1
OS=Drosophila melanogaster GN=Cpsf160 PE=1 SV=1
Length = 1455
Score = 45.1 bits (105), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 58/273 (21%), Positives = 112/273 (41%), Gaps = 61/273 (22%)
Query: 688 DLNLVVAKNNRIEIHTVTP-------EGLRP-------------VKEIFLYGKIAVMKFF 727
D NLVVA N ++++ + P + L P + LYG + ++
Sbjct: 27 DENLVVAGANVLKVYRIAPNVEASQRQKLNPSEMRLAPKMRLECLATYTLYGNVMSLQCV 86
Query: 728 RGPTDKKDLLFIITQRYNAMILECRGDIDNLEILTKAHGNVSDRIGKPSENGIIAII--D 785
+D L I + +L+ D L+ L+ + D G + + + D
Sbjct: 87 SLAGAMRDALLISFKDAKLSVLQHDPDTFALKTLSLHYFEEDDIRGGWTGRYFVPTVRVD 146
Query: 786 PEARVIGLRLYNGLFKIIPLEKDN----FEL-------KASS-------------IRMEE 821
P++R + +Y ++P KDN EL KA + I + +
Sbjct: 147 PDSRCAVMLVYGKRLVVLPFRKDNSLDEIELADVKPIKKAPTAMVSRTPIMASYLIALRD 206
Query: 822 LE-----IQDVQFLHGCQNPTIICIHQDVN---GR-HVKTH-----EISLK-EKEFTKTP 866
L+ + D+QFLHG PT++ +++ V GR V++ ISL ++
Sbjct: 207 LDEKIDNVLDIQFLHGYYEPTLLILYEPVRTCPGRIKVRSDTCVLVAISLNIQQRVHPII 266
Query: 867 WKQDNIEMEASLVIPVPEPLGGAIIIGQESILY 899
W +++ + V P+ +P+GG +++ +++Y
Sbjct: 267 WTVNSLPFDCLQVYPIQKPIGGCLVMTVNAVIY 299
Score = 45.1 bits (105), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 65/146 (44%), Gaps = 23/146 (15%)
Query: 160 VMESFTNLAPIIDMVV---VDLERQG-------------QGQLVTCSGGFKEGSLRIIRN 203
V +S N+API M V+ E G + +LV +G K G+L + N
Sbjct: 486 VCDSLMNVAPINYMCAGERVEFEEDGVTLRPHAESLQDLKIELVAATGHSKNGALSVFVN 545
Query: 204 GIGIEEHACIDLPGIKGIW-----ALSIGSPKNLDNTLVLSFVGHTRVLTLSGAEVEETE 258
I + +L G +W A S + + ++LS T VL +G E+ E E
Sbjct: 546 CINPQIITSFELDGCLDVWTVFDDATKKSSRNDQHDFMLLSQRNSTLVLQ-TGQEINEIE 604
Query: 259 MGGFTSDQQTFYCGNV-DPRTVLQVT 283
GFT +Q T + GN+ R ++QVT
Sbjct: 605 NTGFTVNQPTIFVGNLGQQRFIVQVT 630
>sp|Q753D4|RSE1_ASHGO Pre-mRNA-splicing factor RSE1 OS=Ashbya gossypii (strain ATCC 10895
/ CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=RSE1 PE=3
SV=2
Length = 1288
Score = 42.0 bits (97), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 78/358 (21%), Positives = 136/358 (37%), Gaps = 34/358 (9%)
Query: 120 SIPEC--LTYLDNGVVFVGSRLGDSQLVKL-NRSPDENGTYVSVMES----------FTN 166
+IP+ L +G +F S G+S L + N +E SVM N
Sbjct: 359 TIPQAQNLHIFKHGYMFANSEYGNSYLYQFENLDDEEESMLTSVMPGRRLIIEPRTVLKN 418
Query: 167 LAPIIDMVVVD--LERQGQGQLVTCSGGFKEGSLRIIRNGIGIEEHACIDLPGIK-GIWA 223
L + +V+ L Q ++ G +R+ G+ + LP IW
Sbjct: 419 LLVADKLALVNPILSSQLTERVPLTIATSTLGDVRLFTAGVNFMDIISSPLPAAPLDIWT 478
Query: 224 LSIGSPKNLDNTLVLSFVGHTRVLTLSGAEVEETEMGG---FTSDQQTFYCGNVDPRTVL 280
++ + L ++ T +L ++ VEE E+ + +T ++ ++++
Sbjct: 479 VATNGSR-FHKLLFIALQESTMILKIAAGTVEELELPHNPFVIAQDKTVLIAHMGGQSII 537
Query: 281 QVTPSAAILI---STESKARVSSWEPPNGKSISVVSCNKNQVLCA-TGCDVYYLEVHGSE 336
QVT + + I ES W PP G I S N Q++ A + +V Y E+ +E
Sbjct: 538 QVTENKMVHIIENRDESYESKLEWFPPAGICILKASSNSTQLILALSNNEVVYFEIGSNE 597
Query: 337 -IKQLAHR-ALEYEVACLDISPLSNEETS-SEPAKAQLAAVGLWTDISARLLSLPSLEEV 393
+ +L R +E + L I + + + + L A L + S+ +V
Sbjct: 598 SLNELQDRIEVEERITALAIGNGNRSDYMIIASVDSTVKVYSLKVQDQANFLEVVSM-QV 656
Query: 394 CKEPLGGEIIPRSILMTCFEGHCYLLVALGDGSMFYFSLDPASGRLTDKKKVTLGTQP 451
P S+ + G L + L G LD +G L D + LGT+P
Sbjct: 657 LVSPAS------SLQLASSGGSLCLHIGLDSGVYVRSKLDRNTGELFDVRTKYLGTKP 708
Score = 42.0 bits (97), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 57/112 (50%), Gaps = 5/112 (4%)
Query: 1087 YSMCEFNGKLLASINSTVRLFEWTNEKELRLECSHF----NNIIALFLKVKGDFILVGDL 1142
++MC F+ KLL + + V L+ ++ L+ S+ I+AL + G + VGD+
Sbjct: 969 HAMCPFHDKLLVPLANAVVLYGLGKKQLLKKSISYLPTSITKIVALD-QWNGTRVAVGDI 1027
Query: 1143 MRSLTLLQYKTMEGSFEEISRDYNPNWMTSIEILDDELFLGAENSYNLFICQ 1194
S+TLL + + F ++ D +T ++ +D+ +G + N+++ +
Sbjct: 1028 HESVTLLHFDERKNQFIPVADDVTKRHVTVVKFVDECTVIGGDRFGNIWLLR 1079
>sp|Q5AFT3|CFT1_CANAL Protein CFT1 OS=Candida albicans (strain SC5314 / ATCC MYA-2876)
GN=CFT1 PE=3 SV=1
Length = 1420
Score = 40.4 bits (93), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 50/103 (48%), Gaps = 16/103 (15%)
Query: 810 FELKASSIRMEELEIQDVQFLHGCQNPTIICIH-------------QDVNGRHVKTHEIS 856
F + A+++ + D+QFLH + PTI + +D V T +++
Sbjct: 220 FIIDATTLDSSIDTVVDMQFLHNYREPTIAVLSSKQEVWAGNLIKSKDNIQFQVLTLDLN 279
Query: 857 LKEKEFTKTPWKQDNIEMEASLVIPVPEPLGGAIIIGQESILY 899
LK T + +K DN+ E +IP+P PL G +++G +++
Sbjct: 280 LKS---TISVFKIDNLPYEIDRIIPLPSPLNGTLLVGCNELIH 319
>sp|Q6BHK3|CFT1_DEBHA Protein CFT1 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767
/ JCM 1990 / NBRC 0083 / IGC 2968) GN=CFT1 PE=3 SV=2
Length = 1342
Score = 37.7 bits (86), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 44/87 (50%), Gaps = 10/87 (11%)
Query: 823 EIQDVQFLHGCQNPTIICIHQDVN---GRHVKTHE----ISLKEKEFTK---TPWKQDNI 872
+I D+QFL+ + PTI I + G K + I L TK T K DN+
Sbjct: 211 DIIDMQFLYNYREPTIAIIFSKAHAWAGNLPKVKDNINFIVLSLDLVTKASTTVLKIDNL 270
Query: 873 EMEASLVIPVPEPLGGAIIIGQESILY 899
+ +IP+P+PL G++++G I++
Sbjct: 271 PFDIDKIIPLPQPLNGSLLMGCNEIIH 297
>sp|Q6C740|CFT1_YARLI Protein CFT1 OS=Yarrowia lipolytica (strain CLIB 122 / E 150)
GN=CFT1 PE=3 SV=1
Length = 1269
Score = 37.4 bits (85), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 53/111 (47%), Gaps = 11/111 (9%)
Query: 809 NFELKASSIRMEELEIQDVQFLHGCQNPTIICIHQD----VNGRHVKTHEISLK------ 858
+F +KAS + + D+ FLH + T+ + Q V +++ +S
Sbjct: 174 SFIVKASRLDKRIENVMDICFLHEYRETTMGILFQPKRAWVGMKNILKDTVSYAIVSVDV 233
Query: 859 EKEFTKTPWKQDNIEMEASLVIPVPEPLGGAIIIGQESILY-HSGKSYVAV 908
++ + + + ++A VIP+P PLGG++II +ILY S SY V
Sbjct: 234 HQKNSTVIGTLNGLPVDAQKVIPLPAPLGGSLIICANTILYIDSSASYTGV 284
>sp|Q7SEY2|CFT1_NEUCR Protein cft-1 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A
/ CBS 708.71 / DSM 1257 / FGSC 987) GN=cft-1 PE=3 SV=2
Length = 1456
Score = 36.6 bits (83), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 47/210 (22%), Positives = 89/210 (42%), Gaps = 22/210 (10%)
Query: 809 NFELKASSIRMEELEIQDVQFLHGCQNPTIICIHQDVNGRHVKTHEISLKEKEFT----- 863
+F L+ S + L + FLH ++PTI + + H+ FT
Sbjct: 252 SFVLRLSKLEASLLHPVHLAFLHEYRDPTIGVLSSTKTASNSLGHKDHFTYMVFTLDLQQ 311
Query: 864 ---KTPWKQDNIEMEASLVIPVPEPLGGAIIIGQESILY--HSGKSY-VAVAP--QIIKS 915
T + + + V+ +P P+GGA+++G +++ SGKS +AV P + S
Sbjct: 312 RASTTILAVNGLPQDLFRVVALPAPVGGALLVGANELIHIDQSGKSNGIAVNPLTKQTTS 371
Query: 916 STIVCYAKVDANGERYLLGDLAGRL--FMLLLEKEE------KMDGTFSVKEPKVELLGE 967
++V A +D E + LA L F+L+L ++DG +V ++++
Sbjct: 372 FSLVDQADLDLRLEGCAIDVLAAELGEFLLILNDGRLGLITFRIDGR-TVSGLSIKMIAP 430
Query: 968 HCKGPVVEMSSLSYIKPGSTKQSTANQPAD 997
G V++ S + G + ++ D
Sbjct: 431 EAGGSVIQSRVTSLSRMGRSTMFVGSEEGD 460
>sp|A1DB13|CFT1_NEOFI Protein cft1 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 /
FGSC A1164 / NRRL 181) GN=cft1 PE=3 SV=1
Length = 1400
Score = 36.2 bits (82), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 54/243 (22%), Positives = 105/243 (43%), Gaps = 36/243 (14%)
Query: 993 NQPADFNMEVEVHNLLIIDQNTFEILHAHQLFPGEYALSLISSKFGEDPNTY-----FVL 1047
N+ F E+ +L ++ T+ ++ ++ L P EY +++ + NT+ V+
Sbjct: 1013 NEVISFLPELRQCSLKVVSPRTWTVIDSYSLGPAEYVMAVKNMDLEVSENTHERRNMIVV 1072
Query: 1048 GTAVVHPEENEPKQGRIIIFHY-----------DDGKLQQIAEKEIKGACYSMCEFNGK- 1095
GTA E+ P +G I +F D KL+ I ++ +KGA ++ + G+
Sbjct: 1073 GTAFAW-GEDIPSRGCIYVFEVIKVVPDPEKPETDRKLKLIGKELVKGAVTALSQIGGQG 1131
Query: 1096 -LLASINSTVRLFEWTNEKEL------RLECSHFNNIIALFLKVKGD-FILVGDLMRSLT 1147
L+A+ + + L ++C + N++ ++KG ++GD ++ L
Sbjct: 1132 FLIAAQGQKCMVRGLKEDGSLLPVAFMDMQC--YVNVVK---ELKGTGMCIMGDAVKGLW 1186
Query: 1148 LLQYKTMEGSFEEISRDYNPNWMTSIEILD--DELF-LGAENSYNLFICQKD--SAATSD 1202
Y +D + + E L D+LF L A++ NL + Q D +S+
Sbjct: 1187 FAGYSEEPYKMSLFGKDQGYLEVVAAEFLPDGDKLFILVADSDCNLHVLQYDPEDPKSSN 1246
Query: 1203 EDR 1205
DR
Sbjct: 1247 GDR 1249
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.136 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 459,819,250
Number of Sequences: 539616
Number of extensions: 20118854
Number of successful extensions: 46823
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 34
Number of HSP's that attempted gapping in prelim test: 46378
Number of HSP's gapped (non-prelim): 306
length of query: 1225
length of database: 191,569,459
effective HSP length: 129
effective length of query: 1096
effective length of database: 121,958,995
effective search space: 133667058520
effective search space used: 133667058520
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 67 (30.4 bits)