Query psy7977
Match_columns 1225
No_of_seqs 367 out of 723
Neff 6.4
Searched_HMMs 29240
Date Fri Aug 16 23:40:26 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7977.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7977hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ei3_A DNA damage-binding prot 100.0 4E-134 1E-138 1321.9 103.5 780 32-1223 238-1024(1158)
2 3ei3_A DNA damage-binding prot 100.0 2.4E-48 8.2E-53 510.3 35.9 485 688-1197 46-591 (1158)
3 1pgu_A Actin interacting prote 98.7 0.00028 9.7E-09 84.9 45.3 173 1005-1197 427-614 (615)
4 3sfz_A APAF-1, apoptotic pepti 98.5 0.00078 2.7E-08 89.2 44.5 225 307-553 616-859 (1249)
5 3sfz_A APAF-1, apoptotic pepti 98.3 0.0032 1.1E-07 83.3 42.9 269 123-433 619-912 (1249)
6 2ymu_A WD-40 repeat protein; u 98.2 0.025 8.4E-07 67.7 56.3 167 1005-1196 366-538 (577)
7 1gxr_A ESG1, transducin-like e 97.9 0.047 1.6E-06 59.6 35.3 279 116-432 48-335 (337)
8 1pgu_A Actin interacting prote 97.8 0.12 4.2E-06 61.7 51.1 281 121-433 20-327 (615)
9 1nr0_A Actin interacting prote 97.7 0.22 7.4E-06 60.9 54.2 147 1035-1195 454-609 (611)
10 1gxr_A ESG1, transducin-like e 97.4 0.21 7.3E-06 54.3 31.5 243 285-553 72-325 (337)
11 4aez_A CDC20, WD repeat-contai 97.3 0.29 1E-05 55.9 33.6 243 284-553 112-368 (401)
12 1ri6_A Putative isomerase YBHE 97.2 0.36 1.2E-05 52.7 35.4 285 131-453 5-327 (343)
13 3mmy_A MRNA export factor; mRN 97.2 0.08 2.7E-06 58.4 25.8 226 307-553 40-292 (368)
14 2ynn_A Coatomer subunit beta'; 97.1 0.47 1.6E-05 52.1 31.4 135 286-433 78-216 (304)
15 3mkq_A Coatomer beta'-subunit; 97.1 0.87 3E-05 56.8 36.7 137 285-433 77-216 (814)
16 3odt_A Protein DOA1; ubiquitin 97.1 0.46 1.6E-05 51.0 32.0 270 121-434 20-296 (313)
17 3bws_A Protein LP49; two-domai 97.1 0.28 9.6E-06 56.1 29.7 176 1005-1196 234-431 (433)
18 4aow_A Guanine nucleotide-bind 97.1 0.51 1.7E-05 51.5 31.4 189 346-553 38-234 (340)
19 3v7d_B Cell division control p 97.0 0.86 2.9E-05 52.7 35.7 298 79-433 132-462 (464)
20 3i2n_A WD repeat-containing pr 97.0 0.28 9.7E-06 53.9 27.6 176 1006-1197 140-353 (357)
21 1ri6_A Putative isomerase YBHE 96.9 0.41 1.4E-05 52.2 28.1 217 315-553 48-295 (343)
22 4aez_A CDC20, WD repeat-contai 96.9 0.24 8.2E-06 56.7 27.1 218 309-553 96-322 (401)
23 3mkq_A Coatomer beta'-subunit; 96.9 1.6 5.4E-05 54.4 44.3 236 123-395 17-265 (814)
24 3zwl_B Eukaryotic translation 96.8 0.79 2.7E-05 50.3 34.2 277 119-434 32-346 (369)
25 4a11_B DNA excision repair pro 96.8 0.32 1.1E-05 54.4 27.0 115 307-434 44-175 (408)
26 1sq9_A Antiviral protein SKI8; 96.8 0.94 3.2E-05 50.7 31.4 294 123-434 20-395 (397)
27 2ymu_A WD-40 repeat protein; u 96.8 1.4 4.8E-05 52.3 53.3 264 121-432 18-291 (577)
28 1k8k_C P40, ARP2/3 complex 41 96.8 0.46 1.6E-05 52.6 27.6 114 308-435 10-128 (372)
29 2ovr_B FBW7, F-BOX/WD repeat p 96.8 1 3.6E-05 51.9 31.5 233 285-553 179-426 (445)
30 3k26_A Polycomb protein EED; W 96.7 0.97 3.3E-05 49.6 31.7 120 305-434 17-147 (366)
31 4gqb_B Methylosome protein 50; 96.7 1.2 4E-05 50.4 30.6 238 164-434 79-331 (344)
32 4ery_A WD repeat-containing pr 96.7 1 3.4E-05 49.1 31.0 241 287-553 47-298 (312)
33 3jrp_A Fusion protein of prote 96.7 0.6 2E-05 51.6 27.5 117 308-434 13-134 (379)
34 1l0q_A Surface layer protein; 96.7 0.67 2.3E-05 52.0 28.3 238 285-553 12-262 (391)
35 3jrp_A Fusion protein of prote 96.7 0.87 3E-05 50.3 28.6 118 307-434 56-191 (379)
36 3v7d_B Cell division control p 96.6 1.5 5.1E-05 50.6 35.4 111 309-434 125-236 (464)
37 4g56_B MGC81050 protein; prote 96.6 1 3.5E-05 50.9 29.5 280 123-434 46-343 (357)
38 2vdu_B TRNA (guanine-N(7)-)-me 96.6 1.6 5.5E-05 50.6 32.1 225 308-553 104-371 (450)
39 3vgz_A Uncharacterized protein 96.6 1.2 4E-05 49.0 30.3 240 286-553 70-332 (353)
40 1sq9_A Antiviral protein SKI8; 96.6 0.48 1.6E-05 53.2 26.4 121 306-434 16-157 (397)
41 3gre_A Serine/threonine-protei 96.5 0.59 2E-05 53.6 27.0 241 122-391 66-361 (437)
42 1yfq_A Cell cycle arrest prote 96.5 0.6 2.1E-05 51.1 26.0 175 346-553 11-213 (342)
43 3k26_A Polycomb protein EED; W 96.5 1.1 3.8E-05 49.1 27.9 113 307-433 70-191 (366)
44 3hfq_A Uncharacterized protein 96.5 1.5 5E-05 48.6 34.8 273 132-442 4-325 (347)
45 2aq5_A Coronin-1A; WD40 repeat 96.5 0.58 2E-05 53.2 26.1 219 311-553 39-286 (402)
46 3hfq_A Uncharacterized protein 96.4 1.6 5.6E-05 48.2 28.8 220 316-553 50-304 (347)
47 1got_B GT-beta; complex (GTP-b 96.4 1.7 5.9E-05 48.3 29.8 185 346-553 55-245 (340)
48 1r5m_A SIR4-interacting protei 96.4 1.8 6.2E-05 48.4 33.7 245 158-433 36-318 (425)
49 2pm9_A Protein WEB1, protein t 96.3 0.33 1.1E-05 54.9 22.8 251 161-434 61-337 (416)
50 3zwl_B Eukaryotic translation 96.3 1.8 6E-05 47.5 32.3 134 286-434 55-206 (369)
51 2vdu_B TRNA (guanine-N(7)-)-me 96.3 2.4 8.3E-05 49.1 32.7 70 348-433 104-179 (450)
52 1r5m_A SIR4-interacting protei 96.3 1.4 4.8E-05 49.3 27.6 217 308-553 110-349 (425)
53 3i2n_A WD repeat-containing pr 96.2 0.87 3E-05 49.9 25.1 235 307-553 19-279 (357)
54 3gre_A Serine/threonine-protei 96.2 0.43 1.5E-05 54.8 23.3 254 159-434 53-359 (437)
55 4a11_B DNA excision repair pro 96.1 2.4 8.1E-05 47.3 29.6 115 306-434 99-218 (408)
56 3mmy_A MRNA export factor; mRN 96.1 0.6 2.1E-05 51.2 22.7 172 1005-1198 64-248 (368)
57 2ynn_A Coatomer subunit beta'; 96.0 2 6.8E-05 47.0 26.6 147 262-433 21-171 (304)
58 3ei3_B DNA damage-binding prot 96.0 2.7 9.4E-05 47.0 30.2 134 285-434 96-236 (383)
59 3scy_A Hypothetical bacterial 95.9 2.9 9.8E-05 46.6 36.3 122 305-441 209-344 (361)
60 1nr0_A Actin interacting prote 95.9 4.7 0.00016 49.0 50.4 236 285-553 170-430 (611)
61 2aq5_A Coronin-1A; WD40 repeat 95.8 1.4 4.8E-05 50.1 24.9 222 307-549 82-328 (402)
62 1p22_A F-BOX/WD-repeat protein 95.6 0.84 2.9E-05 52.7 22.5 171 1005-1198 153-326 (435)
63 3bws_A Protein LP49; two-domai 95.6 4.2 0.00014 46.2 31.1 239 286-553 145-419 (433)
64 1yfq_A Cell cycle arrest prote 95.5 3.5 0.00012 44.8 26.6 114 305-433 10-130 (342)
65 2oaj_A Protein SNI1; WD40 repe 95.5 1.1 3.9E-05 57.7 25.3 216 308-539 490-800 (902)
66 1p22_A F-BOX/WD-repeat protein 95.5 0.86 3E-05 52.6 22.0 167 1005-1196 193-364 (435)
67 1q7f_A NHL, brain tumor CG1071 95.5 1.2 4.1E-05 47.9 21.8 179 1005-1200 100-283 (286)
68 4g56_B MGC81050 protein; prote 95.5 2.2 7.6E-05 48.0 24.8 223 308-553 96-331 (357)
69 4e54_B DNA damage-binding prot 95.5 0.76 2.6E-05 53.2 21.3 77 345-433 118-195 (435)
70 3ei3_B DNA damage-binding prot 95.4 2.1 7.2E-05 47.9 24.2 186 346-553 73-270 (383)
71 1l0q_A Surface layer protein; 95.4 4.5 0.00015 45.1 32.0 259 132-433 3-274 (391)
72 4h5i_A Guanine nucleotide-exch 95.4 1.1 3.6E-05 51.0 21.8 70 308-389 271-343 (365)
73 3odt_A Protein DOA1; ubiquitin 95.3 3.9 0.00013 43.7 28.1 215 308-553 20-243 (313)
74 4gqb_B Methylosome protein 50; 95.2 3.4 0.00012 46.5 25.3 111 309-433 85-200 (344)
75 1k8k_C P40, ARP2/3 complex 41 95.2 4.7 0.00016 44.3 34.7 274 80-391 21-363 (372)
76 3f3f_A Nucleoporin SEH1; struc 95.2 4.2 0.00014 43.6 26.6 118 307-434 12-143 (351)
77 4aow_A Guanine nucleotide-bind 95.1 4.5 0.00016 43.8 37.8 278 123-434 42-337 (340)
78 3u4y_A Uncharacterized protein 95.1 4.6 0.00016 43.9 27.0 207 285-553 20-239 (331)
79 3frx_A Guanine nucleotide-bind 95.1 5.2 0.00018 44.0 27.0 219 309-553 68-305 (319)
80 3vu4_A KMHSV2; beta-propeller 95.0 5.9 0.0002 44.4 28.0 148 269-434 103-271 (355)
81 3vl1_A 26S proteasome regulato 94.9 6.5 0.00022 44.2 38.4 271 124-434 61-365 (420)
82 3ow8_A WD repeat-containing pr 94.9 5.9 0.0002 43.7 30.4 259 130-432 48-319 (321)
83 3jro_A Fusion protein of prote 94.8 2.3 7.9E-05 53.4 24.3 153 262-434 17-189 (753)
84 3dm0_A Maltose-binding peripla 94.8 11 0.00038 46.3 30.7 264 82-388 398-692 (694)
85 2ovr_B FBW7, F-BOX/WD repeat p 94.7 8.1 0.00028 44.3 38.9 299 79-434 129-442 (445)
86 3lrv_A PRE-mRNA-splicing facto 94.7 0.81 2.8E-05 51.0 17.8 175 1006-1198 105-293 (343)
87 1pby_B Quinohemoprotein amine 94.7 2.3 8E-05 46.0 21.2 237 285-553 11-298 (337)
88 3vl1_A 26S proteasome regulato 94.5 7.8 0.00027 43.6 33.6 238 285-547 119-398 (420)
89 2xyi_A Probable histone-bindin 94.5 3.8 0.00013 47.2 23.8 251 157-433 118-409 (430)
90 1nir_A Nitrite reductase; hemo 94.5 7.7 0.00026 46.8 27.2 252 285-553 159-439 (543)
91 3q7m_A Lipoprotein YFGL, BAMB; 94.5 7.8 0.00027 43.4 32.9 125 285-431 249-375 (376)
92 1vyh_C Platelet-activating fac 94.5 7.2 0.00025 44.6 25.8 109 308-433 110-222 (410)
93 1got_B GT-beta; complex (GTP-b 94.5 7.4 0.00025 43.1 29.6 130 285-430 206-339 (340)
94 3jro_A Fusion protein of prote 94.4 3.3 0.00011 51.9 24.6 117 308-434 11-132 (753)
95 3ow8_A WD repeat-containing pr 94.4 7.5 0.00026 42.9 31.4 132 285-433 102-236 (321)
96 3dw8_B Serine/threonine-protei 94.4 8.7 0.0003 43.5 26.3 76 346-434 177-258 (447)
97 3vgz_A Uncharacterized protein 94.4 7.2 0.00025 42.5 31.2 261 121-424 42-334 (353)
98 3dm0_A Maltose-binding peripla 94.4 9.3 0.00032 47.0 28.1 111 308-433 432-549 (694)
99 4gga_A P55CDC, cell division c 94.1 10 0.00034 43.3 30.2 245 284-553 124-383 (420)
100 2pbi_B Guanine nucleotide-bind 94.1 9.3 0.00032 42.7 32.1 189 346-553 64-259 (354)
101 1jmx_B Amine dehydrogenase; ox 94.0 5.4 0.00019 43.3 22.5 103 316-433 10-133 (349)
102 3f3f_A Nucleoporin SEH1; struc 94.0 5.5 0.00019 42.6 22.2 78 346-435 11-91 (351)
103 2pm9_A Protein WEB1, protein t 94.0 0.66 2.3E-05 52.3 15.4 97 323-434 43-145 (416)
104 2oaj_A Protein SNI1; WD40 repe 93.9 20 0.00069 46.0 56.8 107 308-434 19-129 (902)
105 3dsm_A Uncharacterized protein 93.6 11 0.00037 41.9 27.0 237 276-543 53-320 (328)
106 2xzm_R RACK1; ribosome, transl 93.5 11 0.00038 41.6 29.2 217 316-553 38-274 (343)
107 3sjl_D Methylamine dehydrogena 93.5 12 0.0004 43.5 24.8 262 264-553 42-350 (386)
108 4ery_A WD repeat-containing pr 93.5 10 0.00034 41.0 30.4 130 287-433 89-222 (312)
109 3fm0_A Protein CIAO1; WDR39,SG 93.4 12 0.00041 41.5 31.2 114 307-434 62-181 (345)
110 2xyi_A Probable histone-bindin 93.1 3 0.0001 48.1 19.2 201 336-553 118-340 (430)
111 4h5i_A Guanine nucleotide-exch 93.1 3.5 0.00012 46.6 19.5 176 1005-1200 157-346 (365)
112 2xzm_R RACK1; ribosome, transl 93.0 13 0.00044 41.1 29.0 222 308-553 78-328 (343)
113 3dw8_B Serine/threonine-protei 92.8 15 0.00053 41.4 31.6 250 123-393 32-377 (447)
114 3dwl_C Actin-related protein 2 92.8 7.1 0.00024 43.2 21.2 236 168-433 12-280 (377)
115 3lrv_A PRE-mRNA-splicing facto 92.4 16 0.00053 40.3 29.5 136 284-434 103-244 (343)
116 4gga_A P55CDC, cell division c 92.3 18 0.00063 41.1 27.0 212 316-553 116-339 (420)
117 3bg1_A Protein SEC13 homolog; 92.0 16 0.00056 39.8 23.1 116 307-434 14-136 (316)
118 3iz6_a 40S ribosomal protein R 92.0 3 0.0001 47.2 17.1 178 1005-1197 180-375 (380)
119 1vyh_C Platelet-activating fac 91.8 21 0.00072 40.7 30.0 132 285-434 130-265 (410)
120 2oiz_A Aromatic amine dehydrog 91.8 9.5 0.00033 43.1 21.0 38 515-553 286-323 (361)
121 1nir_A Nitrite reductase; hemo 91.6 29 0.00098 41.7 29.1 256 262-553 186-497 (543)
122 3dwl_C Actin-related protein 2 91.5 4.1 0.00014 45.2 17.3 103 316-434 23-131 (377)
123 4e54_B DNA damage-binding prot 91.4 5.1 0.00017 46.1 18.4 115 306-433 119-239 (435)
124 3u4y_A Uncharacterized protein 91.3 19 0.00063 39.0 23.2 174 1005-1196 20-206 (331)
125 3frx_A Guanine nucleotide-bind 90.9 21 0.00073 38.9 33.3 267 80-388 31-316 (319)
126 3scy_A Hypothetical bacterial 90.8 23 0.00078 39.1 33.8 218 315-553 60-324 (361)
127 2pbi_B Guanine nucleotide-bind 90.5 25 0.00085 39.2 30.1 214 316-553 118-345 (354)
128 2ojh_A Uncharacterized protein 90.5 5.2 0.00018 41.9 16.0 173 1004-1197 21-204 (297)
129 3dsm_A Uncharacterized protein 90.0 26 0.0009 38.6 23.0 238 285-553 17-285 (328)
130 4ggc_A P55CDC, cell division c 89.5 24 0.00082 37.5 29.0 246 284-553 44-303 (318)
131 3sjl_D Methylamine dehydrogena 89.2 37 0.0013 39.3 31.8 287 79-410 44-382 (386)
132 3iz6_a 40S ribosomal protein R 89.0 21 0.00071 40.1 20.5 133 285-433 180-328 (380)
133 1pby_B Quinohemoprotein amine 88.7 28 0.00096 37.2 27.7 245 121-398 35-319 (337)
134 2hes_X YDR267CP; beta-propelle 88.3 33 0.0011 37.6 28.5 113 307-433 15-137 (330)
135 2pm7_B Protein transport prote 87.9 33 0.0011 36.9 27.7 116 308-434 11-132 (297)
136 2mad_H Methylamine dehydrogena 87.9 42 0.0014 38.2 29.4 241 286-553 48-336 (373)
137 4ggc_A P55CDC, cell division c 87.7 31 0.0011 36.5 27.9 211 317-553 37-259 (318)
138 4gq1_A NUP37; propeller, trans 87.5 29 0.00099 39.2 20.5 104 323-433 109-217 (393)
139 3vu4_A KMHSV2; beta-propeller 87.5 40 0.0014 37.5 32.6 117 306-434 195-336 (355)
140 2hes_X YDR267CP; beta-propelle 87.1 39 0.0013 37.0 31.1 269 123-433 18-327 (330)
141 3no2_A Uncharacterized protein 86.6 38 0.0013 36.7 20.0 172 1006-1199 57-253 (276)
142 3no2_A Uncharacterized protein 86.5 20 0.0007 38.8 17.8 167 1005-1198 15-194 (276)
143 3c75_H MADH, methylamine dehyd 84.7 68 0.0023 37.6 22.4 246 285-553 99-389 (426)
144 1qks_A Cytochrome CD1 nitrite 84.0 34 0.0012 41.5 19.8 177 369-553 166-360 (567)
145 1rwi_B Serine/threonine-protei 83.6 45 0.0015 34.7 21.9 227 121-389 25-264 (270)
146 1jof_A Carboxy-CIS,CIS-muconat 82.9 63 0.0022 35.8 23.1 172 1010-1197 21-224 (365)
147 1jmx_B Amine dehydrogenase; ox 82.7 38 0.0013 36.5 17.8 109 1005-1115 65-179 (349)
148 1jof_A Carboxy-CIS,CIS-muconat 82.2 67 0.0023 35.6 21.6 190 1005-1220 119-355 (365)
149 3g4e_A Regucalcin; six bladed 82.0 60 0.002 35.0 22.0 133 1005-1158 35-185 (297)
150 3fm0_A Protein CIAO1; WDR39,SG 81.2 70 0.0024 35.2 31.7 104 317-434 29-136 (345)
151 2hqs_A Protein TOLB; TOLB, PAL 80.0 61 0.0021 37.0 19.1 171 1005-1196 203-386 (415)
152 2ojh_A Uncharacterized protein 80.0 58 0.002 33.5 23.9 105 316-437 53-163 (297)
153 4asc_A Kelch repeat and BTB do 79.5 75 0.0026 34.5 19.3 170 1005-1184 67-251 (315)
154 2w18_A PALB2, fancn, partner a 78.9 97 0.0033 35.5 20.3 191 183-387 144-355 (356)
155 2vpj_A Kelch-like protein 12; 77.5 81 0.0028 33.8 18.3 182 1005-1199 78-278 (301)
156 1erj_A Transcriptional repress 76.2 1E+02 0.0036 34.4 33.2 136 285-434 145-287 (393)
157 2j04_B YDR362CP, TAU91; beta p 75.9 11 0.00036 45.5 11.3 145 1035-1194 272-425 (524)
158 3g4e_A Regucalcin; six bladed 75.3 49 0.0017 35.7 15.7 129 1061-1196 34-179 (297)
159 3bg1_A Protein SEC13 homolog; 74.5 17 0.0006 39.6 11.9 148 1035-1196 19-197 (316)
160 2pm7_B Protein transport prote 74.4 96 0.0033 33.1 28.0 151 262-434 17-189 (297)
161 1erj_A Transcriptional repress 72.7 1.3E+02 0.0043 33.7 36.3 136 285-433 229-388 (393)
162 2j04_A TAU60, YPL007P, hypothe 72.3 80 0.0027 38.6 17.6 167 1005-1195 107-295 (588)
163 3hxj_A Pyrrolo-quinoline quino 71.1 1.1E+02 0.0039 32.5 17.8 58 370-433 266-323 (330)
164 1qks_A Cytochrome CD1 nitrite 71.1 1.9E+02 0.0064 35.0 27.1 107 285-398 177-284 (567)
165 2oit_A Nucleoporin 214KDA; NH2 68.6 1.4E+02 0.0049 34.3 18.5 69 307-388 150-222 (434)
166 2vpj_A Kelch-like protein 12; 68.3 1E+02 0.0035 33.0 16.2 160 1005-1177 128-300 (301)
167 1xip_A Nucleoporin NUP159; bet 67.7 58 0.002 37.6 14.6 132 277-433 50-190 (388)
168 2ece_A 462AA long hypothetical 67.6 2E+02 0.0068 34.0 25.0 88 369-461 332-451 (462)
169 2xn4_A Kelch-like protein 2; s 64.8 1.4E+02 0.0049 31.8 16.5 167 1005-1184 77-258 (302)
170 1q7f_A NHL, brain tumor CG1071 63.6 1.5E+02 0.0051 31.1 29.0 234 119-389 29-280 (286)
171 2j04_B YDR362CP, TAU91; beta p 61.0 1.4E+02 0.0047 35.7 16.7 167 1026-1195 133-340 (524)
172 2ece_A 462AA long hypothetical 60.4 2.7E+02 0.0091 33.0 25.9 60 379-440 227-293 (462)
173 3mbr_X Glutamine cyclotransfer 57.3 2.1E+02 0.0072 30.8 24.1 176 1004-1197 42-235 (243)
174 2oit_A Nucleoporin 214KDA; NH2 57.2 30 0.001 40.1 9.7 112 308-433 94-222 (434)
175 1npe_A Nidogen, entactin; glyc 56.7 1.9E+02 0.0065 30.2 15.4 130 1061-1198 100-237 (267)
176 2z2n_A Virginiamycin B lyase; 55.3 2E+02 0.0067 29.9 21.9 168 1006-1195 121-293 (299)
177 1xip_A Nucleoporin NUP159; bet 55.3 65 0.0022 37.2 12.0 98 314-433 46-154 (388)
178 2w18_A PALB2, fancn, partner a 54.4 2.9E+02 0.0099 31.5 20.9 172 1005-1195 157-355 (356)
179 3fvz_A Peptidyl-glycine alpha- 53.7 78 0.0027 34.6 12.0 92 1103-1197 70-173 (329)
180 4asc_A Kelch repeat and BTB do 52.8 2.5E+02 0.0084 30.2 18.2 185 1006-1198 14-220 (315)
181 2qc5_A Streptogramin B lactona 52.2 2E+02 0.007 29.7 14.7 128 1061-1193 40-172 (300)
182 3fvz_A Peptidyl-glycine alpha- 51.1 1.6E+02 0.0055 32.0 14.1 132 1061-1194 68-224 (329)
183 2xn4_A Kelch-like protein 2; s 50.7 1.8E+02 0.0061 31.1 14.2 165 1006-1183 31-210 (302)
184 1zgk_A Kelch-like ECH-associat 50.7 1.9E+02 0.0066 31.1 14.5 158 1005-1175 137-307 (308)
185 3hxj_A Pyrrolo-quinoline quino 49.8 2.6E+02 0.0088 29.6 20.9 94 39-150 70-165 (330)
186 2dg1_A DRP35, lactonase; beta 49.8 2.7E+02 0.0091 29.7 15.9 132 1061-1196 65-212 (333)
187 2j04_A TAU60, YPL007P, hypothe 49.7 4.3E+02 0.015 32.2 19.6 183 346-553 85-286 (588)
188 2iwa_A Glutamine cyclotransfer 49.2 2.9E+02 0.0099 30.0 17.7 137 1005-1159 44-185 (266)
189 3nol_A Glutamine cyclotransfer 48.9 3E+02 0.01 30.0 22.3 175 1004-1197 64-256 (262)
190 3qqz_A Putative uncharacterize 47.5 3E+02 0.01 29.7 20.2 192 344-553 24-242 (255)
191 1mda_H Methylamine dehydrogena 45.5 2.1E+02 0.0072 32.5 14.2 241 286-553 47-332 (368)
192 3c75_H MADH, methylamine dehyd 45.1 4.2E+02 0.014 30.7 28.9 76 311-398 325-412 (426)
193 2z2n_A Virginiamycin B lyase; 43.6 2.9E+02 0.01 28.5 31.6 270 120-433 15-294 (299)
194 3nok_A Glutaminyl cyclase; bet 43.5 3.6E+02 0.012 29.5 15.8 136 1006-1160 76-215 (268)
195 2p4o_A Hypothetical protein; p 43.0 2.8E+02 0.0094 29.8 14.2 116 1075-1195 23-145 (306)
196 3ii7_A Kelch-like protein 7; p 40.4 3.6E+02 0.012 28.6 17.3 167 1005-1183 70-253 (306)
197 2z3z_A Dipeptidyl aminopeptida 39.4 5.7E+02 0.019 30.6 25.5 67 308-389 83-150 (706)
198 2woz_A Kelch repeat and BTB do 39.3 3.9E+02 0.013 28.7 15.1 171 1007-1184 26-214 (318)
199 3mbr_X Glutamine cyclotransfer 39.0 3.9E+02 0.013 28.6 18.0 115 1074-1199 9-133 (243)
200 2hqs_A Protein TOLB; TOLB, PAL 38.8 4.7E+02 0.016 29.4 25.9 95 326-438 204-302 (415)
201 1zgk_A Kelch-like ECH-associat 38.5 2.4E+02 0.0082 30.3 12.8 166 1005-1183 90-268 (308)
202 3p5b_L Low density lipoprotein 38.2 3.9E+02 0.013 30.3 15.1 137 1059-1197 178-318 (400)
203 3nol_A Glutamine cyclotransfer 37.9 4.3E+02 0.015 28.7 16.1 114 1074-1198 31-154 (262)
204 2z3z_A Dipeptidyl aminopeptida 37.3 6.1E+02 0.021 30.3 22.1 182 1004-1196 234-434 (706)
205 2ecf_A Dipeptidyl peptidase IV 36.2 3.2E+02 0.011 33.1 14.8 96 1005-1115 64-185 (741)
206 3sov_A LRP-6, low-density lipo 36.2 4.7E+02 0.016 28.7 15.9 130 1061-1197 100-236 (318)
207 2ad6_A Methanol dehydrogenase 36.1 4.5E+02 0.015 31.5 15.8 62 1003-1074 270-338 (571)
208 1ijq_A LDL receptor, low-densi 36.1 4.5E+02 0.015 28.5 15.7 136 1059-1197 96-236 (316)
209 2ghs_A AGR_C_1268P; regucalcin 34.4 4.7E+02 0.016 28.2 16.8 128 1061-1196 70-209 (326)
210 3pbp_A Nucleoporin NUP82; beta 34.0 1E+02 0.0035 36.3 9.0 48 506-553 34-84 (452)
211 2woz_A Kelch repeat and BTB do 33.1 4.8E+02 0.016 27.9 19.2 167 1006-1183 79-259 (318)
212 3m0c_C LDL receptor, low-densi 30.9 6E+02 0.021 32.0 16.2 124 1061-1189 492-623 (791)
213 2p9w_A MAL S 1 allergenic prot 30.8 6.2E+02 0.021 28.5 15.0 131 1061-1196 34-214 (334)
214 3ii7_A Kelch-like protein 7; p 30.8 5E+02 0.017 27.4 15.6 164 1006-1183 25-206 (306)
215 3v65_B Low-density lipoprotein 30.6 5.9E+02 0.02 28.5 14.9 136 1061-1198 137-276 (386)
216 1kb0_A Quinohemoprotein alcoho 30.2 8.3E+02 0.028 29.8 17.5 190 999-1203 277-573 (677)
217 4gq1_A NUP37; propeller, trans 29.1 6.2E+02 0.021 27.9 23.9 71 307-389 137-218 (393)
218 3m0c_C LDL receptor, low-densi 28.8 9.6E+02 0.033 30.1 23.0 137 278-433 397-545 (791)
219 3hrp_A Uncharacterized protein 27.4 5.5E+02 0.019 29.0 14.0 100 1061-1164 239-363 (409)
220 2ecf_A Dipeptidyl peptidase IV 26.1 9.1E+02 0.031 28.9 26.0 40 514-554 405-444 (741)
221 3hrp_A Uncharacterized protein 25.0 6.8E+02 0.023 28.3 14.1 132 1061-1198 151-297 (409)
222 4a2l_A BT_4663, two-component 24.3 9E+02 0.031 29.7 16.2 100 1086-1188 133-236 (795)
223 2fp8_A Strictosidine synthase; 23.9 5.8E+02 0.02 27.2 12.8 101 1061-1163 39-182 (322)
224 1pjx_A Dfpase, DIISOPROPYLFLUO 23.3 6.1E+02 0.021 26.3 12.6 91 1093-1187 28-136 (314)
225 3sre_A PON1, serum paraoxonase 22.9 8.5E+02 0.029 27.4 14.5 132 1060-1197 81-252 (355)
226 3v64_C Agrin; beta propeller, 22.8 7.9E+02 0.027 27.0 14.3 137 1060-1198 93-233 (349)
227 1fwx_A Nitrous oxide reductase 22.6 1.1E+03 0.038 28.6 15.8 206 310-552 90-348 (595)
228 2fp8_A Strictosidine synthase; 22.3 7.3E+02 0.025 26.4 15.7 129 1061-1195 164-311 (322)
229 1npe_A Nidogen, entactin; glyc 22.0 6.6E+02 0.023 25.8 20.3 101 316-433 47-154 (267)
230 1xfd_A DIP, dipeptidyl aminope 21.3 1.1E+03 0.037 28.1 16.0 104 1006-1115 38-147 (723)
231 1rwi_B Serine/threonine-protei 20.2 6.8E+02 0.023 25.3 19.6 72 119-204 66-137 (270)
No 1
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=100.00 E-value=3.9e-134 Score=1321.88 Aligned_cols=780 Identities=66% Similarity=1.050 Sum_probs=700.1
Q ss_pred cCCCCCCCceeEEeeecceEEEEEeCCcceeEEeeccCCCceeeeec------CCeEEEEEcCCCEEEEEEEeCcccCCc
Q psy7977 32 IGSPKNLDNTLVLSFVGHTRVLTLSGAEWGFHLLRGFSSLGSLWNGW------SERYLLGDLAGRLFMLLLEKEEKMDGT 105 (1225)
Q Consensus 32 ~~~P~plGG~Lv~~~vg~n~liyvDq~~~~~~~~~~l~~~~~ifv~~------~~~~LL~~e~G~Ly~l~l~~d~~~~Gr 105 (1225)
+|+|+|+||+|| +|+|.|+|+|+.+...+ ..|+.+ ++.+++| +.+|||++++|+||+|+|..|++..|+
T Consensus 238 ipVP~~~gGvlv---~g~n~i~y~~~~~~~~~-~~p~~~-~~~i~~~~~~~~~~~~~LL~~~~G~l~~l~l~~d~~~~~~ 312 (1158)
T 3ei3_A 238 IAVPEPFGGAII---IGQESITYHNGDKYLAI-APPIIK-QSTIVCHNRVDPNGSRYLLGDMEGRLFMLLLEKEEQMDGT 312 (1158)
T ss_dssp EECCTTTCCEEE---ECSSCEEEEETTEEEEE-CCGGGG-GSCEEEEEECSTTSSEEEEEETTCEEEEEEEEEEC-----
T ss_pred EECCCCCceEEE---EECCEEEEEcCCCceEE-eccccC-CceEEEEEEEecCCCEEEEEeCCCCEEEEEEEEcCCccCc
Confidence 468999999999 99999999999886554 235544 4555665 468999999999999999998543344
Q ss_pred eeeeecEEEEecccCcceeEEEecCCeEEEEeecCCeEEEEEeeCCCCCCCceEEEeeeeccccceeeEEeeccccCCcc
Q psy7977 106 FSVKEPKVELLGEISIPECLTYLDNGVVFVGSRLGDSQLVKLNRSPDENGTYVSVMESFTNLAPIIDMVVVDLERQGQGQ 185 (1225)
Q Consensus 106 ~~Vs~i~i~~~~tis~~SsL~~L~~g~LFvGS~~GDS~L~~i~~~~ddd~~~l~v~d~l~NlgPI~D~~v~d~~~~~~~q 185 (1225)
..|++++++|||++|+|+||++|++|+||+||++|||+||||...++|++.|++++|+++|||||+||+++|..+++++|
T Consensus 313 ~~V~~l~i~~~~~~~~~ssl~~l~~g~lFvgS~~Gds~l~~~~~~~~~~~~~~~~~~~~~N~~PI~D~~v~d~~~~~~~~ 392 (1158)
T 3ei3_A 313 VTLKDLRVELLGETSIAECLTYLDNGVVFVGSRLGDSQLVKLNVDSNEQGSYVVAMETFTNLGPIVDMCVVDLERQGQGQ 392 (1158)
T ss_dssp CEEEEEEEEEEEECSCCSEEEECSTTEEEEECSSSCEEEEEECSSCCTTSCCEEEEEEECCCCSEEEEEEECTTSSSCCE
T ss_pred eeEEEEEEEEcCCccCccEEEEECCCEEEEEEecCCcEEEEEecCCCCccceEEeEeeecCcCCceeEEEEccCCCCCCe
Confidence 47999999999999999999999999999999999999999999988778899999999999999999999987788999
Q ss_pred EEEEEecCCCccEEEEeecceeeEEEEeeCCCcceEeEeeeCCCCCCccEEEEEcCCceEEEEEcCceeeeeccCCcccc
Q psy7977 186 LVTCSGGFKEGSLRIIRNGIGIEEHACIDLPGIKGIWALSIGSPKNLDNTLVLSFVGHTRVLTLSGAEVEETEMGGFTSD 265 (1225)
Q Consensus 186 Lva~sG~g~~GsLrilR~GI~~~~~~s~eLpgv~~iWtl~~~~~~~~d~yLVlSf~~~T~Vl~i~ge~veEv~~sgF~~~ 265 (1225)
||+|||+|++|+||++|+|++++++++++|||++++|+++....+++|+|||+||+++|+||+++++++||++++||.++
T Consensus 393 i~~~sG~g~~gsL~~lr~Gi~~~~~~~~~l~gv~~iWtl~~~~~~~~~~yLvlS~~~~T~Vl~i~~e~veev~~~gf~~~ 472 (1158)
T 3ei3_A 393 LVTCSGAFKEGSLRIIRNGIGIHEHASIDLPGIKGLWPLRSDPNRETDDTLVLSFVGQTRVLMLNGEEVEETELMGFVDD 472 (1158)
T ss_dssp EEEEECCGGGCEEEEEEESBCEEEEEEECCCSCCEEEEECCCSSCSSCCEEEEEETTEEEEEEEETTEEEEECCTTCCSS
T ss_pred EEEEECcCCCCeEEEEecCCCEEEEEeecCCCccEEEEEeecCCCCCCCEEEEECCCCeEEEEEeCCcccccccccccCC
Confidence 99999999999999999999999999999999999999998777889999999999999999999999999999999999
Q ss_pred cCeEEEEeeCCCeEEEEccCcEEEEecCCcceeeeecCCCCCcEEEEEecCCEEEEEECCeEEEEEeeccceeEEeeecc
Q psy7977 266 QQTFYCGNVDPRTVLQVTPSAAILISTESKARVSSWEPPNGKSISVVSCNKNQVLCATGCDVYYLEVHGSEIKQLAHRAL 345 (1225)
Q Consensus 266 ~~TL~ag~l~~~~iVQVT~~~IRli~~~~~~~i~eW~~p~g~~Iv~As~n~~~VlVasgg~Lv~feid~~~L~ev~~~~l 345 (1225)
++||+|++++++++||||+++||+++.+..+.+++|++|.|.+|++|++|++||+++++++++|||+++++|.++.++++
T Consensus 473 ~~TL~~~~l~~~~ivQVt~~~Irli~~~~~~~~~~w~~p~~~~I~~As~n~~~vvva~g~~l~~fel~~~~L~~~~~~~l 552 (1158)
T 3ei3_A 473 QQTFFCGNVAHQQLIQITSASVRLVSQEPKALVSEWKEPQAKNISVASCNSSQVVVAVGRALYYLQIHPQELRQISHTEM 552 (1158)
T ss_dssp SCEEEEEEETTTEEEEEESSCEEEEESSSCCEEEEECCTTCCCCCEEEECSSEEEEEETTEEEEEEEETTEEEEEEEEEC
T ss_pred CCcEEEEEcCCCeEEEEecCEEEEEECCCCeEEEEEECCCCCEEEEEEeCCCEEEEEECCEEEEEEeeCCceeeecccCC
Confidence 99999999999999999999999999876678999999999999999999999999999999999999888999999999
Q ss_pred CceeEEEEeccCCCCCCCCccccCcEEEEEEecCCeEEEEeCCCcceEEeecCCCCCCcccEEEEeeCCeeEEEEEECCC
Q psy7977 346 EYEVACLDISPLSNEETSSEPAKAQLAAVGLWTDISARLLSLPSLEEVCKEPLGGEIIPRSILMTCFEGHCYLLVALGDG 425 (1225)
Q Consensus 346 ~~eIScLai~~~~~~~~~~~~~~s~~laVG~w~d~tv~IlsL~~Le~v~~~~L~~~~~P~SIll~~l~~~~~LlVGl~nG 425 (1225)
+++|+|+++.+.++++ .++++++||+|.|++++||+|++|+.++.++|+.+++|+|++++.+++.+||+|||+||
T Consensus 553 ~~evscl~i~~~~~~~-----~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG 627 (1158)
T 3ei3_A 553 EHEVACLDITPLGDSN-----GLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDG 627 (1158)
T ss_dssp SSCEEEEECCCCSSST-----TCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTS
T ss_pred CCceEEEEeecCCCCc-----ccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCC
Confidence 9999999999887665 57899999999999999999999999999999867899999999999899999999999
Q ss_pred cEEEEEEcCCCCccccceeeeecCccceEEEEeeCCceEEEEecCCcEEEEEcCCeeEEeecccccccccccCCCCCCCC
Q psy7977 426 SMFYFSLDPASGRLTDKKKVTLGTQPTVLKTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLRQVNHMCSLNAESYPD 505 (1225)
Q Consensus 426 ~L~~y~ld~~sg~Ls~~k~~~LG~~pV~L~~~~~~g~~~Vfa~sdrP~liyss~g~l~~~pl~~~~v~~~s~F~se~~p~ 505 (1225)
.|++|.+|..+|+|+++|+++||++|++|+++...|..+|||+|+|||++|+++++++|+|++++++.++|+|++++||+
T Consensus 628 ~l~~~~~d~~tg~l~d~r~~~LG~~pv~L~~~~~~~~~~V~a~s~rp~liy~~~~~l~~s~l~~~~v~~~~~F~se~~~~ 707 (1158)
T 3ei3_A 628 ALFYFGLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLKEVNYMCPLNSDGYPD 707 (1158)
T ss_dssp EEEEEEECTTTCCEEEEEEEECCSSCCEEEEEESSSCEEEEEESSSCEEEEESSSSEEEEEBSSSCCCEEEEECCSSSTT
T ss_pred eEEEEEEcCCCCccccceeEEcCCCceEEEEEeeCCceeEEEECCCCEEEEEcCCceEEeccChHHhceEeccCcccCCC
Confidence 99999999999999999999999999999999888889999999999999999999999999999999999999999999
Q ss_pred eEEEEeCCeEEEEEEcCCCCeeeEEEeCCCcccEEEEecCCCEEEEEEEeeeccccCCC-CCCCCCcccccccccccccc
Q psy7977 506 SLALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQEADGS-TPVRPSASTQAQNTTSSTIS 584 (1225)
Q Consensus 506 glv~vs~~~LrI~~i~~~~~l~ir~IpLg~TprrIay~p~s~~~vV~t~~~~~~~~d~~-~~~~~~~~~~~~~~~~~~~~ 584 (1225)
|++++++++|||+++++.++|++|+|||++|||||+|||++++|+|+|++.+..+.++. .|.+.+++.++.+
T Consensus 708 g~v~~~~~~LrI~~i~~~~~~~~~~ipL~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 780 (1158)
T 3ei3_A 708 SLALANNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALS------- 780 (1158)
T ss_dssp EEEEECSSCEEEEEECCSSSEEEEEEECSSEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSE-------
T ss_pred cEEEEcCCceEEEEecccCCeeEEEEeCCCCceEEEEcCCCCEEEEEEEeccccccccccchhhhhhhhhhhh-------
Confidence 99999999999999999999999999999999999999999999999977643222110 0000000000000
Q ss_pred cccccCCCCCccccCCCCCCcccceeecceeeeccccccccccccccchhhhhcccceeeecccCCCCCCceeeeeccee
Q psy7977 585 SLSYIKPGSTKQSTANQPADFNMEVEVHNLLIIDQNTFERNFTSSTDLNLVVAKNNRIEIHTVTPEGLRPVKEIFLYGKI 664 (1225)
Q Consensus 585 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 664 (1225)
T Consensus 781 -------------------------------------------------------------------------------- 780 (1158)
T 3ei3_A 781 -------------------------------------------------------------------------------- 780 (1158)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeeeeccCCCCcccceeeeeccccccceeeccceeeeeeeCCCCCccceeEEeeeeeeeeeeccCCCCccceeeeeeecc
Q psy7977 665 AVMKFFRGPTDKKDLLFIITQRTDLNLVVAKNNRIEIHTVTPEGLRPVKEIFLYGKIAVMKFFRGPTDKKDLLFIITQRY 744 (1225)
Q Consensus 665 ~~~~~~~~~~~~~~~~~~~~~~~~~~lv~ak~~~lei~~~~~~~l~~~~~~~~~g~i~~l~~~r~~~s~~d~l~i~t~~~ 744 (1225)
T Consensus 781 -------------------------------------------------------------------------------- 780 (1158)
T 3ei3_A 781 -------------------------------------------------------------------------------- 780 (1158)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceeeeeeccccchhhhhhhccCCCCcccCCCCCCCceeeeCCccceeeeEeecceeeeeccccccccccccchhhhhhhh
Q psy7977 745 NAMILECRGDIDNLEILTKAHGNVSDRIGKPSENGIIAIIDPEARVIGLRLYNGLFKIIPLEKDNFELKASSIRMEELEI 824 (1225)
Q Consensus 745 ~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~vDp~~r~~~~~~~~g~~~v~~~~~~~~~l~~~~~r~~el~~ 824 (1225)
+.. . .
T Consensus 781 ---------~~~---------~----------~----------------------------------------------- 785 (1158)
T 3ei3_A 781 ---------SSV---------S----------S----------------------------------------------- 785 (1158)
T ss_dssp ---------EEE---------C----------C-----------------------------------------------
T ss_pred ---------hcc---------c----------c-----------------------------------------------
Confidence 000 0 0
Q ss_pred ccccccccCCCCceEEeeeccCCcceeeeeeeeccccccCCCccccccccccccccccCCCCCceeEeeeeeeeeecCCc
Q psy7977 825 QDVQFLHGCQNPTIICIHQDVNGRHVKTHEISLKEKEFTKTPWKQDNIEMEASLVIPVPEPLGGAIIIGQESILYHSGKS 904 (1225)
Q Consensus 825 ~~~~fl~~~~~p~~a~ly~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lipvp~~~gG~~v~g~~~~~y~~~~~ 904 (1225)
+ +.+ +
T Consensus 786 -----------~-----------------------------------------~~~--~--------------------- 790 (1158)
T 3ei3_A 786 -----------S-----------------------------------------KLF--S--------------------- 790 (1158)
T ss_dssp -----------C-----------------------------------------CCC------------------------
T ss_pred -----------c-----------------------------------------ccc--c---------------------
Confidence 0 000 0
Q ss_pred cccccccccccceeEEeeeecccccceeccccchhhhhhhhhhhhcccCccccccceeeecccccCCCceecccccccCC
Q psy7977 905 YVAVAPQIIKSSTIVCYAKVDANGERYLLGDLAGRLFMLLLEKEEKMDGTFSVKEPKVELLGEHCKGPVVEMSSLSYIKP 984 (1225)
Q Consensus 905 ~~~~~~~~~~~~~~v~~~~~d~~~~~~ll~~~~G~l~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~p 984 (1225)
-.|+..
T Consensus 791 --------------~~~~~~------------------------------------------------------------ 796 (1158)
T 3ei3_A 791 --------------SSTAPH------------------------------------------------------------ 796 (1158)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------ccccCc------------------------------------------------------------
Confidence 000000
Q ss_pred CCCcccCCCCCCCCcceeeeEEEEEEECCCCcEEEEEECCCCCceEEEEEEEecCCCCeEEEEEeeeeCCCCCCCcceEE
Q psy7977 985 GSTKQSTANQPADFNMEVEVHNLLIIDQNTFEILHAHQLFPGEYALSLISSKFGEDPNTYFVLGTAVVHPEENEPKQGRI 1064 (1225)
Q Consensus 985 g~~~~~~~~~~~~~~~~~~~s~irlvdp~t~~~i~~~eL~~nE~~~si~~v~~~~~~~~~lvVGTa~~~~eed~~~~GrI 1064 (1225)
+..+|++.|+|||+|+||.+|+++++++|++||+++|+++|+|.+++++|+|||||++.|+|+++++|||
T Consensus 797 ----------~~~~g~~~~~s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri 866 (1158)
T 3ei3_A 797 ----------ETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRI 866 (1158)
T ss_dssp -------------CCCEEEEEEEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEE
T ss_pred ----------hhhcCCceeeEEEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEE
Confidence 0145778899999999999999999999999999999999999888889999999999988899999999
Q ss_pred EEEEEeCCcEEEEEEEEecCceeeeccccCeEEEEeCCEEEEEEcCCCceeeeeecccceeEEEEEEEECCEEEEeeccc
Q psy7977 1065 IIFHYDDGKLQQIAEKEIKGACYSMCEFNGKLLASINSTVRLFEWTNEKELRLECSHFNNIIALFLKVKGDFILVGDLMR 1144 (1225)
Q Consensus 1065 ~vf~i~~~kL~lv~~~ev~G~v~al~~f~G~LLa~vg~~l~vy~l~~~~~L~~e~~~~~~~i~~~l~~~g~~IlvGD~~k 1144 (1225)
++|+++++||+++|+++++|+|+|||+|+||||||+|++|++|+|+++++|++++..|++++++++++.||+|+|||+|+
T Consensus 867 ~vf~v~~~kL~lv~~~~v~g~v~al~~~~g~Lla~ig~~l~vy~l~~~~~L~~~~~~~~~i~~~~l~~~~~~I~vgD~~~ 946 (1158)
T 3ei3_A 867 VVFQYSDGKLQTVAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTTEKELRTECNHYNNIMALYLKTKGDFILVGDLMR 946 (1158)
T ss_dssp EEEEEETTEEEEEEEEEESSCEEEEEEETTEEEEEETTEEEEEEECTTSCEEEEEEECCCSCEEEEEEETTEEEEEESSB
T ss_pred EEEEEECCEEEEEEEEEcCCcCEEEeeeCCEEEEEcCCEEEEEECCCCceEEEEeeccccEEEEEEeccCCEEEEEEhhh
Confidence 99999988999999999999999999999999999999999999999999998888888766789999999999999999
Q ss_pred cEEEEEEecCCCeEEEEeccCCCceeEEEEeeeCCcEEEEcCCCcEEEEEeCCCCCCccccceeEEEEEEEEeCCceee
Q psy7977 1145 SLTLLQYKTMEGSFEEISRDYNPNWMTSIEILDDELFLGAENSYNLFICQKDSAATSDEDRTHLQEVGTVHLVGDGLVQ 1223 (1225)
Q Consensus 1145 Sv~~l~y~~~~~~L~~~arD~~~~wvta~~~Ld~dt~l~aD~~gNl~vl~~~~~~~~~~~~~rL~~~~~fhl~Ge~i~~ 1223 (1225)
|++|++|++++++|+++|||+.|+|+||++|||++++++||++||||+++++|+++++++++||+++++||+ ||.++.
T Consensus 947 Sv~~~~y~~~~~~L~~~a~D~~~~~vta~~~ld~~t~l~aD~~gNl~vl~~~~~~~~~~~~~~L~~~~~fhl-G~~vt~ 1024 (1158)
T 3ei3_A 947 SVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFHL-GEFVNV 1024 (1158)
T ss_dssp CEEEEEEETTTTEEEEEEECCSCBCEEEEEEEETTEEEEEETTSEEEEEEECTTCCSTTGGGBEEEEEEEEC-SSCEEE
T ss_pred eEEEEEEEcCCCeEEEEEeecccccEEEEEEEccCcEEEEcCCCcEEEEecCCCCCCccccceeeeEEEEeC-CCcEee
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999 999854
No 2
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=100.00 E-value=2.4e-48 Score=510.33 Aligned_cols=485 Identities=45% Similarity=0.677 Sum_probs=367.8
Q ss_pred cccceeeccceeeeeeeCCCCCccceeEEeeeeeeeeeeccCCCCccceeeeeeeccceeeeeeccccchhhhhhhccCC
Q psy7977 688 DLNLVVAKNNRIEIHTVTPEGLRPVKEIFLYGKIAVMKFFRGPTDKKDLLFIITQRYNAMILECRGDIDNLEILTKAHGN 767 (1225)
Q Consensus 688 ~~~lv~ak~~~lei~~~~~~~l~~~~~~~~~g~i~~l~~~r~~~s~~d~l~i~t~~~~~~~~~~~~~~~~~~t~~~~~~~ 767 (1225)
+.+|||||+|+||||+++++||.+++++.+||+|++|+.|||+++++|+|||+||++++++++||++.+.+++..++|++
T Consensus 46 ~~~Lvvak~~~Lel~~~~~~~L~~v~~~~l~G~I~~l~~~r~~g~~~D~L~v~td~~~~~il~~d~~~~~~~~~t~~~~~ 125 (1158)
T 3ei3_A 46 DLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGKIAVMELFRPKGESKDLLFILTAKYNACILEYKQSGESIDIITRAHGN 125 (1158)
T ss_dssp CCEEEEEETTEEEEEEEETTEEEEEEEEECSSCEEEEEEECCTTCSSCEEEEEETTCEEEEEEEEC-CCCCEEEEEEEEE
T ss_pred ccEEEEecCCEEEEEEEcccceEEEEEEEcccEEEEEEEEcCCCCCceEEEEEeCCceEEEEEEcCCCCceeEEEEeccc
Confidence 57899999999999999999999999999999999999999999999999999999999999999998878888889999
Q ss_pred CCcccCCCCCCCceeeeCCccceeeeEeecceeeeeccccccccccccchhhhhhhhccccccccCCCCceEEeeeccCC
Q psy7977 768 VSDRIGKPSENGIIAIIDPEARVIGLRLYNGLFKIIPLEKDNFELKASSIRMEELEIQDVQFLHGCQNPTIICIHQDVNG 847 (1225)
Q Consensus 768 ~~~~~~~~~~~~~~~~vDp~~r~~~~~~~~g~~~v~~~~~~~~~l~~~~~r~~el~~~~~~fl~~~~~p~~a~ly~~~~~ 847 (1225)
.+++++|++++|.+|+|||.|||++|++|||.+.|+|+.+++..|.+.++|++|++|+|++|||++.+|+||+||++..+
T Consensus 126 ~~~~~~r~~~~g~~l~vDP~gR~~~l~~~e~~~~v~pl~~~~~~l~~~~~~l~~~~v~d~~fL~g~~~P~~A~Ly~d~~~ 205 (1158)
T 3ei3_A 126 VQDRIGRPSETGIIGIIDPECRMIGLRLYDGLFKVIPLDRDNKELKAFNIRLEELHVIDVKFLYGCQAPTICFVYQDPQG 205 (1158)
T ss_dssp CCCSSCCBCTTCCEEEECTTSSEEEEECBTTEEEEEECCTTCTTCCCEEEECSCCCEEEEEECSSCSSCEEEEEEEETTE
T ss_pred cccCccccCCCCCEEEEcCCCCEEEEEeccCEEEEEEecCCcccccccccccccceEEEEEEecCCCCcEEEEEEECCCC
Confidence 99999999999999999999999999999999999999865557788899999999999999999999999999999877
Q ss_pred cceeeeeeeeccccccCCCccccccccccccccccCCCCCceeEeeeeeeeeecCCccccccccccccceeEEeeeeccc
Q psy7977 848 RHVKTHEISLKEKEFTKTPWKQDNIEMEASLVIPVPEPLGGAIIIGQESILYHSGKSYVAVAPQIIKSSTIVCYAKVDAN 927 (1225)
Q Consensus 848 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lipvp~~~gG~~v~g~~~~~y~~~~~~~~~~~~~~~~~~~v~~~~~d~~ 927 (1225)
+.+++.++.|....+.+..|...++|.+|++|||||+|+||+||||++.|.|+|+.....+..|+.+.++|+||+.+|.+
T Consensus 206 ~~l~~y~ldl~~~~~~~~~w~~~~l~~~a~~LipVP~~~gGvlv~g~n~i~y~~~~~~~~~~~p~~~~~~i~~~~~~~~~ 285 (1158)
T 3ei3_A 206 RHVKTYEVSLREKEFNKGPWKQENVEAEASMVIAVPEPFGGAIIIGQESITYHNGDKYLAIAPPIIKQSTIVCHNRVDPN 285 (1158)
T ss_dssp EEEEEEEEETTTTEEEECSSCCEEECTTCCEEEECCTTTCCEEEECSSCEEEEETTEEEEECCGGGGGSCEEEEEECSTT
T ss_pred CEEEEEEEEcCCCeeeecccccccCCCCCCEEEECCCCCceEEEEECCEEEEEcCCCceEEeccccCCceEEEEEEEecC
Confidence 66666666665655666678888999999999999999999999999999999998877777788888999999999988
Q ss_pred ccceeccccchhhhhhhhhhhhcccCccccccceeeecccccCCCc----------------------------------
Q psy7977 928 GERYLLGDLAGRLFMLLLEKEEKMDGTFSVKEPKVELLGEHCKGPV---------------------------------- 973 (1225)
Q Consensus 928 ~~~~ll~~~~G~l~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~---------------------------------- 973 (1225)
+.||||+|++|+||+|++++|.++++...|++++++++|+++.|++
T Consensus 286 ~~~~LL~~~~G~l~~l~l~~d~~~~~~~~V~~l~i~~~~~~~~~ssl~~l~~g~lFvgS~~Gds~l~~~~~~~~~~~~~~ 365 (1158)
T 3ei3_A 286 GSRYLLGDMEGRLFMLLLEKEEQMDGTVTLKDLRVELLGETSIAECLTYLDNGVVFVGSRLGDSQLVKLNVDSNEQGSYV 365 (1158)
T ss_dssp SSEEEEEETTCEEEEEEEEEEC-----CEEEEEEEEEEEECSCCSEEEECSTTEEEEECSSSCEEEEEECSSCCTTSCCE
T ss_pred CCEEEEEeCCCCEEEEEEEEcCCccCceeEEEEEEEEcCCccCccEEEEECCCEEEEEEecCCcEEEEEecCCCCccceE
Confidence 8999999999999999999986555557899999999999999999
Q ss_pred eecccccccCC------CC----Cc----ccCCCCCCCCcceeeeEEEEEEECC-CCcEEEEEECCCCCceEEEEEEEec
Q psy7977 974 VEMSSLSYIKP------GS----TK----QSTANQPADFNMEVEVHNLLIIDQN-TFEILHAHQLFPGEYALSLISSKFG 1038 (1225)
Q Consensus 974 ~~~~~~~~~~p------g~----~~----~~~~~~~~~~~~~~~~s~irlvdp~-t~~~i~~~eL~~nE~~~si~~v~~~ 1038 (1225)
..+++++|++| +. |. ++|+.++ .|+++++-.. .-+.+...+|+....++++.. .-.
T Consensus 366 ~~~~~~~N~~PI~D~~v~d~~~~~~~~i~~~sG~g~--------~gsL~~lr~Gi~~~~~~~~~l~gv~~iWtl~~-~~~ 436 (1158)
T 3ei3_A 366 VAMETFTNLGPIVDMCVVDLERQGQGQLVTCSGAFK--------EGSLRIIRNGIGIHEHASIDLPGIKGLWPLRS-DPN 436 (1158)
T ss_dssp EEEEEECCCCSEEEEEEECTTSSSCCEEEEEECCGG--------GCEEEEEEESBCEEEEEEECCCSCCEEEEECC-CSS
T ss_pred EeEeeecCcCCceeEEEEccCCCCCCeEEEEECcCC--------CCeEEEEecCCCEEEEEeecCCCccEEEEEee-cCC
Confidence 12789999999 11 11 3332222 3788887654 567778888887666665531 011
Q ss_pred CCCCeEEEEEeeeeCCCCCCCcceEEEEEEEeCCcEEEEEEEEec--Cceeeeccc-cCeEEEEeCCEEEEEEcCCCcee
Q psy7977 1039 EDPNTYFVLGTAVVHPEENEPKQGRIIIFHYDDGKLQQIAEKEIK--GACYSMCEF-NGKLLASINSTVRLFEWTNEKEL 1115 (1225)
Q Consensus 1039 ~~~~~~lvVGTa~~~~eed~~~~GrI~vf~i~~~kL~lv~~~ev~--G~v~al~~f-~G~LLa~vg~~l~vy~l~~~~~L 1115 (1225)
++...|++++.. . .-.||++....++-+....+. .+--+.+.+ +|++|=---+.+|+++...++.+
T Consensus 437 ~~~~~yLvlS~~----~-------~T~Vl~i~~e~veev~~~gf~~~~~TL~~~~l~~~~ivQVt~~~Irli~~~~~~~~ 505 (1158)
T 3ei3_A 437 RETDDTLVLSFV----G-------QTRVLMLNGEEVEETELMGFVDDQQTFFCGNVAHQQLIQITSASVRLVSQEPKALV 505 (1158)
T ss_dssp CSSCCEEEEEET----T-------EEEEEEEETTEEEEECCTTCCSSSCEEEEEEETTTEEEEEESSCEEEEESSSCCEE
T ss_pred CCCCCEEEEECC----C-------CeEEEEEeCCcccccccccccCCCCcEEEEEcCCCeEEEEecCEEEEEECCCCeEE
Confidence 234579998752 1 225777754334333211111 111112222 34444444556677765543333
Q ss_pred e-eeecccceeEEEEEEEECCEEEEeeccccEEEEEEecCCCeEEEEeccCCCceeEEEEeeeC-------Cc-EEEEcC
Q psy7977 1116 R-LECSHFNNIIALFLKVKGDFILVGDLMRSLTLLQYKTMEGSFEEISRDYNPNWMTSIEILDD-------EL-FLGAEN 1186 (1225)
Q Consensus 1116 ~-~e~~~~~~~i~~~l~~~g~~IlvGD~~kSv~~l~y~~~~~~L~~~arD~~~~wvta~~~Ld~-------dt-~l~aD~ 1186 (1225)
. +.... ... ++...+.+..|+++. -..+.++..+ +++|.+..+-..+..++|.++-.. +. .+|...
T Consensus 506 ~~w~~p~-~~~-I~~As~n~~~vvva~-g~~l~~fel~--~~~L~~~~~~~l~~evscl~i~~~~~~~~~s~~~aVg~~~ 580 (1158)
T 3ei3_A 506 SEWKEPQ-AKN-ISVASCNSSQVVVAV-GRALYYLQIH--PQELRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWT 580 (1158)
T ss_dssp EEECCTT-CCC-CCEEEECSSEEEEEE-TTEEEEEEEE--TTEEEEEEEEECSSCEEEEECCCCSSSTTCCSEEEEEETT
T ss_pred EEEECCC-CCE-EEEEEeCCCEEEEEE-CCEEEEEEee--CCceeeecccCCCCceEEEEeecCCCCcccccEEEEEECC
Confidence 2 11110 011 133335567777774 3334444444 467888877666778999887632 23 455557
Q ss_pred CCcEEEEEeCC
Q psy7977 1187 SYNLFICQKDS 1197 (1225)
Q Consensus 1187 ~gNl~vl~~~~ 1197 (1225)
++++.++..+.
T Consensus 581 d~tv~I~sL~~ 591 (1158)
T 3ei3_A 581 DISARILKLPS 591 (1158)
T ss_dssp TTEEEEEETTT
T ss_pred CCEEEEEECCC
Confidence 99999999874
No 3
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=98.69 E-value=0.00028 Score=84.88 Aligned_cols=173 Identities=10% Similarity=0.111 Sum_probs=113.6
Q ss_pred EEEEEEECCCCcEEEEEECCCCCceEEEEEEEecCCCCeEEEEEeeeeCCCCCCCcceEEEEEEEeCCcEEEEEEEEecC
Q psy7977 1005 HNLLIIDQNTFEILHAHQLFPGEYALSLISSKFGEDPNTYFVLGTAVVHPEENEPKQGRIIIFHYDDGKLQQIAEKEIKG 1084 (1225)
Q Consensus 1005 s~irlvdp~t~~~i~~~eL~~nE~~~si~~v~~~~~~~~~lvVGTa~~~~eed~~~~GrI~vf~i~~~kL~lv~~~ev~G 1084 (1225)
..+++.+..+.+.+..+.. ...+.+++ |. ..++++|+. ..|.|++|++.++++....-....+
T Consensus 427 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~---~~---~~~l~~~~~---------~d~~i~~~~~~~~~~~~~~~~~~~~ 489 (615)
T 1pgu_A 427 DDLLILQSFTGDIIKSVRL--NSPGSAVS---LS---QNYVAVGLE---------EGNTIQVFKLSDLEVSFDLKTPLRA 489 (615)
T ss_dssp SEEEEEETTTCCEEEEEEC--SSCEEEEE---EC---SSEEEEEET---------TTSCEEEEETTEEEEEEECSSCCSS
T ss_pred CceEEEeccCCceeeeccc--CCCceEEE---Ec---CCEEEEeec---------CCCeEEEEECCCccccccccCCccC
Confidence 4688888888888887763 33445543 33 468888752 1478999998765443211123357
Q ss_pred ceeeeccc-cCeEEEEe--CCEEEEEEcCCCceeeeeecccceeEEEEEE--E----------ECCEEEEeeccccEEEE
Q psy7977 1085 ACYSMCEF-NGKLLASI--NSTVRLFEWTNEKELRLECSHFNNIIALFLK--V----------KGDFILVGDLMRSLTLL 1149 (1225)
Q Consensus 1085 ~v~al~~f-~G~LLa~v--g~~l~vy~l~~~~~L~~e~~~~~~~i~~~l~--~----------~g~~IlvGD~~kSv~~l 1149 (1225)
.|++++-- +|++|++. ..+|++|++...+.+..-....... +..+. . .+.+++.|+.-..|.+.
T Consensus 490 ~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~-v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw 568 (615)
T 1pgu_A 490 KPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSK-INAISWKPAEKGANEEEIEEDLVATGSLDTNIFIY 568 (615)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSC-EEEEEECCCC------CCSCCEEEEEETTSCEEEE
T ss_pred ceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEeecCCCCc-eeEEEEcCccccccccccCCCEEEEEcCCCcEEEE
Confidence 78887632 67666654 4689999998777665211101222 24444 3 67899999988888887
Q ss_pred EEecCCCeEEEEeccCCCceeEEEEeeeCCcEEEEcCCCcEEEEEeCC
Q psy7977 1150 QYKTMEGSFEEISRDYNPNWMTSIEILDDELFLGAENSYNLFICQKDS 1197 (1225)
Q Consensus 1150 ~y~~~~~~L~~~arD~~~~wvta~~~Ld~dt~l~aD~~gNl~vl~~~~ 1197 (1225)
..+.....+..+ ..+...++++.|..++.++.+..+|.+++.+.+.
T Consensus 569 ~~~~~~~~~~~~--~~h~~~v~~l~~s~~~~l~s~~~d~~v~iw~~~~ 614 (615)
T 1pgu_A 569 SVKRPMKIIKAL--NAHKDGVNNLLWETPSTLVSSGADACIKRWNVVL 614 (615)
T ss_dssp ESSCTTCCEEET--TSSTTCEEEEEEEETTEEEEEETTSCEEEEEEC-
T ss_pred ECCCCceechhh--hcCccceEEEEEcCCCCeEEecCCceEEEEeeec
Confidence 665433344433 2346789999999887799999999999998865
No 4
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=98.47 E-value=0.00078 Score=89.21 Aligned_cols=225 Identities=13% Similarity=0.060 Sum_probs=120.4
Q ss_pred CcEEEEEec--CCEEEEE-ECCeEEEEEeeccceeEEeeeccCceeEEEEeccCCCCCCCCccccCcEEEEEEecCCeEE
Q psy7977 307 KSISVVSCN--KNQVLCA-TGCDVYYLEVHGSEIKQLAHRALEYEVACLDISPLSNEETSSEPAKAQLAAVGLWTDISAR 383 (1225)
Q Consensus 307 ~~Iv~As~n--~~~VlVa-sgg~Lv~feid~~~L~ev~~~~l~~eIScLai~~~~~~~~~~~~~~s~~laVG~w~d~tv~ 383 (1225)
..|.+.+.+ +.+++.+ .++.|.++++..++.... -..-...|.|+++++- ..+++.|.. |++|+
T Consensus 616 ~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~-~~~h~~~v~~~~~s~~-----------~~~l~s~~~-d~~v~ 682 (1249)
T 3sfz_A 616 DAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLD-IKAHEDEVLCCAFSSD-----------DSYIATCSA-DKKVK 682 (1249)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEE-ECCCSSCEEEEEECTT-----------SSEEEEEET-TSEEE
T ss_pred ccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEE-eccCCCCEEEEEEecC-----------CCEEEEEeC-CCeEE
Confidence 457666664 4455555 578898888765532211 1123578999998752 468888886 99999
Q ss_pred EEeCCCcceEEeecCCCCCCcccEEEEeeCCeeEEEEEECCCcEEEEEEcCCCCccccceeeeec-CccceEEEEeeCCc
Q psy7977 384 LLSLPSLEEVCKEPLGGEIIPRSILMTCFEGHCYLLVALGDGSMFYFSLDPASGRLTDKKKVTLG-TQPTVLKTFRSLST 462 (1225)
Q Consensus 384 IlsL~~Le~v~~~~L~~~~~P~SIll~~l~~~~~LlVGl~nG~L~~y~ld~~sg~Ls~~k~~~LG-~~pV~L~~~~~~g~ 462 (1225)
||++.+.+.+..-.-. .....++.+..-+...++..|..||.+..|.+.. ++.. ....| ..++.-..+..+|.
T Consensus 683 vwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~--~~~~---~~~~~h~~~v~~~~~sp~~~ 756 (1249)
T 3sfz_A 683 IWDSATGKLVHTYDEH-SEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQ--KECR---NTMFGHTNSVNHCRFSPDDE 756 (1249)
T ss_dssp EEETTTCCEEEEEECC-SSCEEEEEECSSSSCCEEEEEETTSCEEEEETTS--SSEE---EEECCCSSCEEEEEECSSTT
T ss_pred EEECCCCceEEEEcCC-CCcEEEEEEecCCCceEEEEEeCCCeEEEEECCC--cchh---heecCCCCCEEEEEEecCCC
Confidence 9999876554432211 1111233333222456888999999999998753 2211 11112 22333333322232
Q ss_pred eEEEEec-CCcEEEEEc-CCee-EEeeccc------------ccccccccCCCCCCCCeEEEEeCCeEEEEEEcCCCCee
Q psy7977 463 TNVFACS-DRPTVIYSS-NHKL-VFSNVNL------------RQVNHMCSLNAESYPDSLALATDSTFTFGTIDEIQKLH 527 (1225)
Q Consensus 463 ~~Vfa~s-drP~liyss-~g~l-~~~pl~~------------~~v~~~s~F~se~~p~glv~vs~~~LrI~~i~~~~~l~ 527 (1225)
.+++.| +....++.- .++. ....... ...-..+.|+. -...++...++.+.+..+.......
T Consensus 757 -~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--dg~~l~~~~~~~v~~~d~~~~~~~~ 833 (1249)
T 3sfz_A 757 -LLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSA--DGDKIIVAAKNKVLLFDIHTSGLLA 833 (1249)
T ss_dssp -EEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCT--TSSEEEEEETTEEEEEETTTCCEEE
T ss_pred -EEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECC--CCCEEEEEcCCcEEEEEecCCCcee
Confidence 222222 233333331 1211 1111000 00001112221 2345666778888888776544333
Q ss_pred eEEEeCCCcccEEEEecCCCEEEEEE
Q psy7977 528 IRTVPLGEAPRRIAYQESSQTFGVIT 553 (1225)
Q Consensus 528 ir~IpLg~TprrIay~p~s~~~vV~t 553 (1225)
.....-...+..++++|..+.++++.
T Consensus 834 ~~~~~~~~~v~~~~~sp~~~~l~~~~ 859 (1249)
T 3sfz_A 834 EIHTGHHSTIQYCDFSPYDHLAVIAL 859 (1249)
T ss_dssp EEECSSSSCCCEEEECSSTTEEEEEC
T ss_pred EEcCCCCCceEEEEEcCCCCEEEEEe
Confidence 32223456889999999999888775
No 5
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=98.27 E-value=0.0032 Score=83.35 Aligned_cols=269 Identities=12% Similarity=0.100 Sum_probs=136.2
Q ss_pred eeEEEecCC-eEEEEeecCCeEEEEEeeCCCCCCCceEEEeeee-ccccceeeEEeeccccCCccEEEEEecCCCccEEE
Q psy7977 123 ECLTYLDNG-VVFVGSRLGDSQLVKLNRSPDENGTYVSVMESFT-NLAPIIDMVVVDLERQGQGQLVTCSGGFKEGSLRI 200 (1225)
Q Consensus 123 SsL~~L~~g-~LFvGS~~GDS~L~~i~~~~ddd~~~l~v~d~l~-NlgPI~D~~v~d~~~~~~~qLva~sG~g~~GsLri 200 (1225)
.+++.-.+| +++.||..|.=.++.+... +.+.++. .-++|..+++.. ..+.++++| .+|.+++
T Consensus 619 ~~~~~s~~~~~l~s~~~d~~i~vw~~~~~--------~~~~~~~~h~~~v~~~~~s~-----~~~~l~s~~--~d~~v~v 683 (1249)
T 3sfz_A 619 YHACFSQDGQRIASCGADKTLQVFKAETG--------EKLLDIKAHEDEVLCCAFSS-----DDSYIATCS--ADKKVKI 683 (1249)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTTC--------CEEEEECCCSSCEEEEEECT-----TSSEEEEEE--TTSEEEE
T ss_pred EEEEECCCCCEEEEEeCCCeEEEEECCCC--------CEEEEeccCCCCEEEEEEec-----CCCEEEEEe--CCCeEEE
Confidence 455554444 5666665554444443321 2344444 347888877743 233444443 4678888
Q ss_pred EeecceeeEEEEeeCCCcceEeEeeeCCCCCCccEEEEEcCCce-EEEEEcCc-eeeeec-------cCCcccccCeEEE
Q psy7977 201 IRNGIGIEEHACIDLPGIKGIWALSIGSPKNLDNTLVLSFVGHT-RVLTLSGA-EVEETE-------MGGFTSDQQTFYC 271 (1225)
Q Consensus 201 lR~GI~~~~~~s~eLpgv~~iWtl~~~~~~~~d~yLVlSf~~~T-~Vl~i~ge-~veEv~-------~sgF~~~~~TL~a 271 (1225)
..-.-+ +.+..+. ..-..+|.+..... ....+++.+..+.+ .++.+... .+.... .-.|..+...|++
T Consensus 684 wd~~~~-~~~~~~~-~~~~~v~~~~~~~~-~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s 760 (1249)
T 3sfz_A 684 WDSATG-KLVHTYD-EHSEQVNCCHFTNK-SNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLAS 760 (1249)
T ss_dssp EETTTC-CEEEEEE-CCSSCEEEEEECSS-SSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEE
T ss_pred EECCCC-ceEEEEc-CCCCcEEEEEEecC-CCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEE
Confidence 764322 2223332 12235666655431 22334544444443 34443211 111111 1112223333333
Q ss_pred EeeCCCeEEEEccCcEEEEecCCcceeeeecCC------------CCCcEEEEEe--cCCEEEEEECCeEEEEEeeccce
Q psy7977 272 GNVDPRTVLQVTPSAAILISTESKARVSSWEPP------------NGKSISVVSC--NKNQVLCATGCDVYYLEVHGSEI 337 (1225)
Q Consensus 272 g~l~~~~iVQVT~~~IRli~~~~~~~i~eW~~p------------~g~~Iv~As~--n~~~VlVasgg~Lv~feid~~~L 337 (1225)
+.- ...|++.+...++....+..+ ....+.+++. .+.+++++.++.+..+.+..+..
T Consensus 761 ~s~---------dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~ 831 (1249)
T 3sfz_A 761 CSA---------DGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGL 831 (1249)
T ss_dssp EES---------SSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCE
T ss_pred EEC---------CCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCc
Confidence 322 234666665543333332211 0112333333 34555555788888888765543
Q ss_pred eEEeeeccCceeEEEEeccCCCCCCCCccccCcEEEEEEecCCeEEEEeCCCcceEEeecCCCCCCcccEEEEeeCCeeE
Q psy7977 338 KQLAHRALEYEVACLDISPLSNEETSSEPAKAQLAAVGLWTDISARLLSLPSLEEVCKEPLGGEIIPRSILMTCFEGHCY 417 (1225)
Q Consensus 338 ~ev~~~~l~~eIScLai~~~~~~~~~~~~~~s~~laVG~w~d~tv~IlsL~~Le~v~~~~L~~~~~P~SIll~~l~~~~~ 417 (1225)
.......-...+.|+++.+. ..++++|.. ++++++|++.+...+....-. .....++.+. ....+
T Consensus 832 ~~~~~~~~~~~v~~~~~sp~-----------~~~l~~~~~-dg~v~vwd~~~~~~~~~~~~h-~~~v~~v~~s--pdg~~ 896 (1249)
T 3sfz_A 832 LAEIHTGHHSTIQYCDFSPY-----------DHLAVIALS-QYCVELWNIDSRLKVADCRGH-LSWVHGVMFS--PDGSS 896 (1249)
T ss_dssp EEEEECSSSSCCCEEEECSS-----------TTEEEEECS-SSCEEEEETTTTEEEEEECCC-SSCEEEEEEC--TTSSE
T ss_pred eeEEcCCCCCceEEEEEcCC-----------CCEEEEEeC-CCeEEEEEcCCCceeeecCCC-ccceEEEEEC--CCCCE
Confidence 33222234567888888652 567888887 999999999875444322110 1222334333 24568
Q ss_pred EEEEECCCcEEEEEEc
Q psy7977 418 LLVALGDGSMFYFSLD 433 (1225)
Q Consensus 418 LlVGl~nG~L~~y~ld 433 (1225)
|+.+..||.+..|.+.
T Consensus 897 l~s~s~dg~v~vw~~~ 912 (1249)
T 3sfz_A 897 FLTASDDQTIRVWETK 912 (1249)
T ss_dssp EEEEETTSCEEEEEHH
T ss_pred EEEEeCCCeEEEEEcc
Confidence 9999999999999865
No 6
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=98.22 E-value=0.025 Score=67.70 Aligned_cols=167 Identities=10% Similarity=0.165 Sum_probs=96.7
Q ss_pred EEEEEEECCCCcEEEEEECCCCCceEEEEEEEecCCCCeEEEEEeeeeCCCCCCCcceEEEEEEEeCCcEEEEEEEEecC
Q psy7977 1005 HNLLIIDQNTFEILHAHQLFPGEYALSLISSKFGEDPNTYFVLGTAVVHPEENEPKQGRIIIFHYDDGKLQQIAEKEIKG 1084 (1225)
Q Consensus 1005 s~irlvdp~t~~~i~~~eL~~nE~~~si~~v~~~~~~~~~lvVGTa~~~~eed~~~~GrI~vf~i~~~kL~lv~~~ev~G 1084 (1225)
+.|++.|. +.+.+..+.-. ...+.++ .|..+ ..+++.|.. .|.|++|+.....++.+ ..-++
T Consensus 366 g~v~~~~~-~~~~~~~~~~~-~~~v~~~---~~s~d-g~~l~~~~~----------d~~v~~~~~~~~~~~~~--~~~~~ 427 (577)
T 2ymu_A 366 KTVKLWNR-NGQLLQTLTGH-SSSVRGV---AFSPD-GQTIASASD----------DKTVKLWNRNGQLLQTL--TGHSS 427 (577)
T ss_dssp SEEEEEET-TCCEEEEEECC-SSCEEEE---EECTT-SSCEEEEET----------TSEEEEECTTCCEEEEE--ECCSS
T ss_pred CEEEEEcC-CCCEEEEecCC-CCCeEEE---EECCC-CCEEEEEeC----------CCEEEEEeCCCCEEEEe--cCCCC
Confidence 35777774 44555554432 2334444 45543 356776641 36788887432222211 23367
Q ss_pred ceeeeccc-cCeEEEE--eCCEEEEEEcCCCceeeeeecccceeEEEEEE--EECCEEEEeeccccEEEEEEecCCCeEE
Q psy7977 1085 ACYSMCEF-NGKLLAS--INSTVRLFEWTNEKELRLECSHFNNIIALFLK--VKGDFILVGDLMRSLTLLQYKTMEGSFE 1159 (1225)
Q Consensus 1085 ~v~al~~f-~G~LLa~--vg~~l~vy~l~~~~~L~~e~~~~~~~i~~~l~--~~g~~IlvGD~~kSv~~l~y~~~~~~L~ 1159 (1225)
.|++++-- +|++||. -..++++|+...+ .++....+-.. +..+. ..|.+++.|..-..|.+ |+.....+.
T Consensus 428 ~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~~-~~~~~~~~~~~--v~~~~~spd~~~las~~~d~~i~i--w~~~~~~~~ 502 (577)
T 2ymu_A 428 SVWGVAFSPDDQTIASASDDKTVKLWNRNGQ-LLQTLTGHSSS--VRGVAFSPDGQTIASASDDKTVKL--WNRNGQLLQ 502 (577)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEETTSC-EEEEEECCSSC--EEEEEECTTSCEEEEEETTSEEEE--EETTSCEEE
T ss_pred CeEEEEECCCCCEEEEEcCCCEEEEEECCCC-EEEEEcCCCCC--EEEEEEcCCCCEEEEEeCCCEEEE--EcCCCCEEE
Confidence 78877522 4655554 4578999997543 33311111112 23333 35678888887777766 455444455
Q ss_pred EEeccCCCceeEEEEeeeCC-cEEEEcCCCcEEEEEeC
Q psy7977 1160 EISRDYNPNWMTSIEILDDE-LFLGAENSYNLFICQKD 1196 (1225)
Q Consensus 1160 ~~arD~~~~wvta~~~Ld~d-t~l~aD~~gNl~vl~~~ 1196 (1225)
.+.. +...+++++|-.++ .++.+..+|.+.+..++
T Consensus 503 ~~~~--h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~ 538 (577)
T 2ymu_A 503 TLTG--HSSSVRGVAFSPDGQTIASASDDKTVKLWNRN 538 (577)
T ss_dssp EEEC--CSSCEEEEEECTTSSCEEEEETTSEEEEECTT
T ss_pred EEeC--CCCCEEEEEEcCCCCEEEEEECcCEEEEEeCC
Confidence 5443 45678999987665 68889999999998754
No 7
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=97.85 E-value=0.047 Score=59.57 Aligned_cols=279 Identities=12% Similarity=0.043 Sum_probs=146.4
Q ss_pred ecccCcceeEEEecCCeEEEEeecCCeEEEEEeeCCCCCCCceEEEeeeeccccceeeEEeeccccCCccEEEEEecCCC
Q psy7977 116 LGEISIPECLTYLDNGVVFVGSRLGDSQLVKLNRSPDENGTYVSVMESFTNLAPIIDMVVVDLERQGQGQLVTCSGGFKE 195 (1225)
Q Consensus 116 ~~tis~~SsL~~L~~g~LFvGS~~GDS~L~~i~~~~ddd~~~l~v~d~l~NlgPI~D~~v~d~~~~~~~qLva~sG~g~~ 195 (1225)
++......++..-.++.+++.+. |..+.-|..........+........-++|..+++.. ..+.+++++ .+
T Consensus 48 ~~h~~~v~~~~~~~~~~~l~~~~--dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-----~~~~l~~~~--~d 118 (337)
T 1gxr_A 48 LNHGEVVCAVTISNPTRHVYTGG--KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLP-----DGCTLIVGG--EA 118 (337)
T ss_dssp ECCSSCCCEEEECSSSSEEEEEC--BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECT-----TSSEEEEEE--SS
T ss_pred ccCCCceEEEEEecCCcEEEEcC--CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcC-----CCCEEEEEc--CC
Confidence 34444557777776665444443 5555555443211112233333334567888887753 223344332 46
Q ss_pred ccEEEEeecceee-EEEEeeCCCcceEeEeeeCCCCCCccEEEEEcCCce-EEEEEcCc-eeeeeccCCcccccCeEEEE
Q psy7977 196 GSLRIIRNGIGIE-EHACIDLPGIKGIWALSIGSPKNLDNTLVLSFVGHT-RVLTLSGA-EVEETEMGGFTSDQQTFYCG 272 (1225)
Q Consensus 196 GsLrilR~GI~~~-~~~s~eLpgv~~iWtl~~~~~~~~d~yLVlSf~~~T-~Vl~i~ge-~veEv~~sgF~~~~~TL~ag 272 (1225)
|.+++..-.-+-. ....+. .....++.+.... ...+++....+.+ .++.+... .+..... ....+.+-
T Consensus 119 ~~i~~~d~~~~~~~~~~~~~-~~~~~i~~~~~~~---~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~-----~~~~i~~~ 189 (337)
T 1gxr_A 119 STLSIWDLAAPTPRIKAELT-SSAPACYALAISP---DSKVCFSCCSDGNIAVWDLHNQTLVRQFQG-----HTDGASCI 189 (337)
T ss_dssp SEEEEEECCCC--EEEEEEE-CSSSCEEEEEECT---TSSEEEEEETTSCEEEEETTTTEEEEEECC-----CSSCEEEE
T ss_pred CcEEEEECCCCCcceeeecc-cCCCceEEEEECC---CCCEEEEEeCCCcEEEEeCCCCceeeeeec-----ccCceEEE
Confidence 7888876433211 122221 1123455555433 2456666554443 34444221 1222211 01112221
Q ss_pred ee-CCC-eEEEEc-cCcEEEEecCCcceeeeecCCCCCcEEEEEec--CCEEEEE-ECCeEEEEEeeccceeEEeeeccC
Q psy7977 273 NV-DPR-TVLQVT-PSAAILISTESKARVSSWEPPNGKSISVVSCN--KNQVLCA-TGCDVYYLEVHGSEIKQLAHRALE 346 (1225)
Q Consensus 273 ~l-~~~-~iVQVT-~~~IRli~~~~~~~i~eW~~p~g~~Iv~As~n--~~~VlVa-sgg~Lv~feid~~~L~ev~~~~l~ 346 (1225)
.+ .++ .++=.. ...|++++...++.+.....+ ..|...+.. +.+++++ .++.+.++++...+... .....
T Consensus 190 ~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~--~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~--~~~~~ 265 (337)
T 1gxr_A 190 DISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFT--SQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQ--LHLHE 265 (337)
T ss_dssp EECTTSSEEEEEETTSEEEEEETTTTEEEEEEECS--SCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEE--ECCCS
T ss_pred EECCCCCEEEEEecCCcEEEEECCCCceEeeecCC--CceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEE--EcCCc
Confidence 12 122 222121 345777777665555555432 346666664 5566666 57889888887554332 22345
Q ss_pred ceeEEEEeccCCCCCCCCccccCcEEEEEEecCCeEEEEeCCCcceEEeecCCCCCCcccEEEEeeCCeeEEEEEECCCc
Q psy7977 347 YEVACLDISPLSNEETSSEPAKAQLAAVGLWTDISARLLSLPSLEEVCKEPLGGEIIPRSILMTCFEGHCYLLVALGDGS 426 (1225)
Q Consensus 347 ~eIScLai~~~~~~~~~~~~~~s~~laVG~w~d~tv~IlsL~~Le~v~~~~L~~~~~P~SIll~~l~~~~~LlVGl~nG~ 426 (1225)
..|.+++..+- .++++.+.. |+++++|++++.+.+....- ...+.++.+. ....+|+.+..||.
T Consensus 266 ~~v~~~~~~~~-----------~~~l~~~~~-dg~i~~~~~~~~~~~~~~~~--~~~v~~~~~s--~~~~~l~~~~~dg~ 329 (337)
T 1gxr_A 266 SCVLSLKFAYC-----------GKWFVSTGK-DNLLNAWRTPYGASIFQSKE--SSSVLSCDIS--VDDKYIVTGSGDKK 329 (337)
T ss_dssp SCEEEEEECTT-----------SSEEEEEET-TSEEEEEETTTCCEEEEEEC--SSCEEEEEEC--TTSCEEEEEETTSC
T ss_pred cceeEEEECCC-----------CCEEEEecC-CCcEEEEECCCCeEEEEecC--CCcEEEEEEC--CCCCEEEEecCCCe
Confidence 67888888652 457888887 99999999987665543222 1223334332 24578999999999
Q ss_pred EEEEEE
Q psy7977 427 MFYFSL 432 (1225)
Q Consensus 427 L~~y~l 432 (1225)
+..|++
T Consensus 330 i~iw~~ 335 (337)
T 1gxr_A 330 ATVYEV 335 (337)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 998875
No 8
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=97.81 E-value=0.12 Score=61.69 Aligned_cols=281 Identities=11% Similarity=0.085 Sum_probs=144.3
Q ss_pred cceeEEEecCC-eEEEEeecCCeEEEEEeeCCCCCCCceEEEeeee-cccc-ceeeEEeeccccCCccEEEEEecCCCcc
Q psy7977 121 IPECLTYLDNG-VVFVGSRLGDSQLVKLNRSPDENGTYVSVMESFT-NLAP-IIDMVVVDLERQGQGQLVTCSGGFKEGS 197 (1225)
Q Consensus 121 ~~SsL~~L~~g-~LFvGS~~GDS~L~~i~~~~ddd~~~l~v~d~l~-NlgP-I~D~~v~d~~~~~~~qLva~sG~g~~Gs 197 (1225)
...++.+-.+| +|.+|+ .| .+.-|..... ....+.+..+. .-++ |..+++... ...++++.++. +|.
T Consensus 20 ~v~~~~~spdg~~l~~~~-~~--~v~v~~~~~~--~~~~~~~~~~~~h~~~~v~~~~~sp~---~~~~~l~s~~~--dg~ 89 (615)
T 1pgu_A 20 FTTHLSYDPTTNAIAYPC-GK--SAFVRCLDDG--DSKVPPVVQFTGHGSSVVTTVKFSPI---KGSQYLCSGDE--SGK 89 (615)
T ss_dssp CCCCCEEETTTTEEEEEE-TT--EEEEEECCSS--CCSSCSEEEECTTTTSCEEEEEECSS---TTCCEEEEEET--TSE
T ss_pred ceeEEEECCCCCEEEEec-CC--eEEEEECCCC--CCccccceEEecCCCceEEEEEECcC---CCCCEEEEecC--CCE
Confidence 44677777666 455565 33 3333332210 00012233444 3366 888776431 02344444433 788
Q ss_pred EEEEeecc-------eeeEEEEeeCCCcceEeEeeeCCCCCCccEEEEEcCCc---eEEEEEc-CceeeeeccCCccccc
Q psy7977 198 LRIIRNGI-------GIEEHACIDLPGIKGIWALSIGSPKNLDNTLVLSFVGH---TRVLTLS-GAEVEETEMGGFTSDQ 266 (1225)
Q Consensus 198 LrilR~GI-------~~~~~~s~eLpgv~~iWtl~~~~~~~~d~yLVlSf~~~---T~Vl~i~-ge~veEv~~sgF~~~~ 266 (1225)
+++..-.- .......+.- .-..+..+.... ...+|+....+. ..|+..+ ++.+.... ...
T Consensus 90 v~vw~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~---~~~~l~~~~~~~~~~~~v~~~d~~~~~~~~~-----~~~ 160 (615)
T 1pgu_A 90 VIVWGWTFDKESNSVEVNVKSEFQV-LAGPISDISWDF---EGRRLCVVGEGRDNFGVFISWDSGNSLGEVS-----GHS 160 (615)
T ss_dssp EEEEEEEEEGGGTEEEEEEEEEEEC-CSSCEEEEEECT---TSSEEEEEECCSSCSEEEEETTTCCEEEECC-----SCS
T ss_pred EEEEeCCCCcccccccccccchhhc-ccccEEEEEEeC---CCCEEEEeccCCCCccEEEEEECCCcceeee-----cCC
Confidence 88877531 1222333321 123455555443 345666655442 2333322 11111111 111
Q ss_pred CeEEEEeeC-CC--eEEEEc-cCcEEEEecCCcceeeeecCCCC--CcEEEEEec---CCEEEEE-ECCeEEEEEeeccc
Q psy7977 267 QTFYCGNVD-PR--TVLQVT-PSAAILISTESKARVSSWEPPNG--KSISVVSCN---KNQVLCA-TGCDVYYLEVHGSE 336 (1225)
Q Consensus 267 ~TL~ag~l~-~~--~iVQVT-~~~IRli~~~~~~~i~eW~~p~g--~~Iv~As~n---~~~VlVa-sgg~Lv~feid~~~ 336 (1225)
..+.+-.+. ++ .++-.. ...|++++...++.+..+....+ ..|.+.+.+ +.+++.+ .++.|.++++..++
T Consensus 161 ~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~ 240 (615)
T 1pgu_A 161 QRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGE 240 (615)
T ss_dssp SCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCC
T ss_pred ccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCC
Confidence 122222221 22 233222 24577777766555566553222 158877776 3456666 57899999887654
Q ss_pred eeEEeee---ccCceeEEEEeccCCCCCCCCccccCcEEEEEEecCCeEEEEeCCCcceEEeecCCCCCCcccEEEEeeC
Q psy7977 337 IKQLAHR---ALEYEVACLDISPLSNEETSSEPAKAQLAAVGLWTDISARLLSLPSLEEVCKEPLGGEIIPRSILMTCFE 413 (1225)
Q Consensus 337 L~ev~~~---~l~~eIScLai~~~~~~~~~~~~~~s~~laVG~w~d~tv~IlsL~~Le~v~~~~L~~~~~P~SIll~~l~ 413 (1225)
....-.. .....|.+++.. + ..+++.+.. |+++++|++.+.+.+..........+..+.-+.+.
T Consensus 241 ~~~~~~~~~~~~~~~v~~~~~~---~---------~~~l~~~~~-d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (615)
T 1pgu_A 241 FLKYIEDDQEPVQGGIFALSWL---D---------SQKFATVGA-DATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT 307 (615)
T ss_dssp EEEECCBTTBCCCSCEEEEEES---S---------SSEEEEEET-TSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEE
T ss_pred EeEEecccccccCCceEEEEEc---C---------CCEEEEEcC-CCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeC
Confidence 3322112 445678888885 1 457888886 99999999987665554333211122222222222
Q ss_pred CeeEEEEEECCCcEEEEEEc
Q psy7977 414 GHCYLLVALGDGSMFYFSLD 433 (1225)
Q Consensus 414 ~~~~LlVGl~nG~L~~y~ld 433 (1225)
...+|++|..+|.+..|.+.
T Consensus 308 ~~~~l~~~~~~g~i~~~d~~ 327 (615)
T 1pgu_A 308 GNGRIISLSLDGTLNFYELG 327 (615)
T ss_dssp ETTEEEEEETTSCEEEEETT
T ss_pred CCCeEEEEECCCCEEEEECC
Confidence 45689999999999998764
No 9
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=97.69 E-value=0.22 Score=60.92 Aligned_cols=147 Identities=12% Similarity=0.179 Sum_probs=98.5
Q ss_pred EEecCCCCeEEEEEeeeeCCCCCCCcceEEEEEEEeCCcEEEEEEEEecCceeeeccc--cCeEEEEe--CCEEEEEEcC
Q psy7977 1035 SKFGEDPNTYFVLGTAVVHPEENEPKQGRIIIFHYDDGKLQQIAEKEIKGACYSMCEF--NGKLLASI--NSTVRLFEWT 1110 (1225)
Q Consensus 1035 v~~~~~~~~~lvVGTa~~~~eed~~~~GrI~vf~i~~~kL~lv~~~ev~G~v~al~~f--~G~LLa~v--g~~l~vy~l~ 1110 (1225)
+.|.. ...++++|.. .|.|++|++..++++.+....-.+.|++++ | +|++||+. ..++++|++.
T Consensus 454 va~sp-dg~~lasgs~----------D~~v~lwd~~~~~~~~~~~~~h~~~v~~v~-fspdg~~las~s~d~~v~~w~~~ 521 (611)
T 1nr0_A 454 VALSN-DKQFVAVGGQ----------DSKVHVYKLSGASVSEVKTIVHPAEITSVA-FSNNGAFLVATDQSRKVIPYSVA 521 (611)
T ss_dssp EEECT-TSCEEEEEET----------TSEEEEEEEETTEEEEEEEEECSSCEEEEE-ECTTSSEEEEEETTSCEEEEEGG
T ss_pred EEEeC-CCCEEEEeCC----------CCeEEEEEccCCceeeeeccCCCCceEEEE-ECCCCCEEEEEcCCCCEEEEEcC
Confidence 34544 3468888862 468999999887776666555678899986 5 67777654 5799999997
Q ss_pred CCceee-e-eecccceeEEEEEE--EECCEEEEeeccccEEEEEEecCCCeEEEEeccCC-CceeEEEEeeeCCcEEEEc
Q psy7977 1111 NEKELR-L-ECSHFNNIIALFLK--VKGDFILVGDLMRSLTLLQYKTMEGSFEEISRDYN-PNWMTSIEILDDELFLGAE 1185 (1225)
Q Consensus 1111 ~~~~L~-~-e~~~~~~~i~~~l~--~~g~~IlvGD~~kSv~~l~y~~~~~~L~~~arD~~-~~wvta~~~Ld~dt~l~aD 1185 (1225)
....+. . ........ +..+. ..|.+++.|..=+.|.+...+.....+..+ ...+ ..+|+++.|.+++.++.+-
T Consensus 522 ~~~~~~~~~~~~~H~~~-V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~~~~~~-~~~h~~~~v~~v~fs~d~~l~s~~ 599 (611)
T 1nr0_A 522 NNFELAHTNSWTFHTAK-VACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIII-KGAHAMSSVNSVIWLNETTIVSAG 599 (611)
T ss_dssp GTTEESCCCCCCCCSSC-EEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEE-TTSSTTSCEEEEEEEETTEEEEEE
T ss_pred CCCceeeeeeeeecccc-eeEEEECCCCCEEEEEECCCcEEEEECCCcccccchh-hccCcccCeeEEEEcCCCEEEEec
Confidence 633232 1 11111222 24444 356799999988888887665433223122 2334 6789999999988899999
Q ss_pred CCCcEEEEEe
Q psy7977 1186 NSYNLFICQK 1195 (1225)
Q Consensus 1186 ~~gNl~vl~~ 1195 (1225)
.++.+.+...
T Consensus 600 ~D~~i~lW~~ 609 (611)
T 1nr0_A 600 QDSNIKFWNV 609 (611)
T ss_dssp TTSCEEEEEC
T ss_pred CCCCEEEEec
Confidence 9999988765
No 10
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=97.36 E-value=0.21 Score=54.27 Aligned_cols=243 Identities=9% Similarity=-0.057 Sum_probs=127.3
Q ss_pred CcEEEEecCCcc---eeeeecC-CCCCcEEEEEec--CCEEEEE-ECCeEEEEEeeccceeEEe-eeccCceeEEEEecc
Q psy7977 285 SAAILISTESKA---RVSSWEP-PNGKSISVVSCN--KNQVLCA-TGCDVYYLEVHGSEIKQLA-HRALEYEVACLDISP 356 (1225)
Q Consensus 285 ~~IRli~~~~~~---~i~eW~~-p~g~~Iv~As~n--~~~VlVa-sgg~Lv~feid~~~L~ev~-~~~l~~eIScLai~~ 356 (1225)
..|++++.+..+ .+..+.. +....|.+.+.. +.+++.+ .++.+.++++...+..... ...-...+.|+++.+
T Consensus 72 g~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~ 151 (337)
T 1gxr_A 72 GCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISP 151 (337)
T ss_dssp SEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECT
T ss_pred CeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECC
Confidence 345666654321 2222221 233467777775 4456666 5789999988765432222 223356788998865
Q ss_pred CCCCCCCCccccCcEEEEEEecCCeEEEEeCCCcceEEeecCCCCCCcccEEEEeeCCeeEEEEEECCCcEEEEEEcCCC
Q psy7977 357 LSNEETSSEPAKAQLAAVGLWTDISARLLSLPSLEEVCKEPLGGEIIPRSILMTCFEGHCYLLVALGDGSMFYFSLDPAS 436 (1225)
Q Consensus 357 ~~~~~~~~~~~~s~~laVG~w~d~tv~IlsL~~Le~v~~~~L~~~~~P~SIll~~l~~~~~LlVGl~nG~L~~y~ld~~s 436 (1225)
..+++++|.. |+.|++|++.+.+.+....-. .....++.+. +...+|+++..+|.+..|.+..
T Consensus 152 -----------~~~~l~~~~~-dg~v~~~d~~~~~~~~~~~~~-~~~i~~~~~~--~~~~~l~~~~~dg~i~~~d~~~-- 214 (337)
T 1gxr_A 152 -----------DSKVCFSCCS-DGNIAVWDLHNQTLVRQFQGH-TDGASCIDIS--NDGTKLWTGGLDNTVRSWDLRE-- 214 (337)
T ss_dssp -----------TSSEEEEEET-TSCEEEEETTTTEEEEEECCC-SSCEEEEEEC--TTSSEEEEEETTSEEEEEETTT--
T ss_pred -----------CCCEEEEEeC-CCcEEEEeCCCCceeeeeecc-cCceEEEEEC--CCCCEEEEEecCCcEEEEECCC--
Confidence 2467888887 999999999876554432111 1222333332 2456899999999999987653
Q ss_pred CccccceeeeecCccceEEEEeeCCceEEEEec-CCcEEEEEcC-CeeEEeecccccccccccCCCCCCCCeEEEEe-CC
Q psy7977 437 GRLTDKKKVTLGTQPTVLKTFRSLSTTNVFACS-DRPTVIYSSN-HKLVFSNVNLRQVNHMCSLNAESYPDSLALAT-DS 513 (1225)
Q Consensus 437 g~Ls~~k~~~LG~~pV~L~~~~~~g~~~Vfa~s-drP~liyss~-g~l~~~pl~~~~v~~~s~F~se~~p~glv~vs-~~ 513 (1225)
++... ..-...++.-..+...+ ..+++.+ +....+|..+ +......-....+.++ .|+. ....++... ++
T Consensus 215 ~~~~~---~~~~~~~v~~~~~s~~~-~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~v~~~-~~~~--~~~~l~~~~~dg 287 (337)
T 1gxr_A 215 GRQLQ---QHDFTSQIFSLGYCPTG-EWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSL-KFAY--CGKWFVSTGKDN 287 (337)
T ss_dssp TEEEE---EEECSSCEEEEEECTTS-SEEEEEETTSCEEEEETTSSCEEEECCCSSCEEEE-EECT--TSSEEEEEETTS
T ss_pred CceEe---eecCCCceEEEEECCCC-CEEEEEcCCCcEEEEECCCCCeEEEcCCccceeEE-EECC--CCCEEEEecCCC
Confidence 22111 11112222222222222 2222222 3333334322 2211111111112111 1221 122344443 46
Q ss_pred eEEEEEEcCCCCeeeEEEeCCCcccEEEEecCCCEEEEEE
Q psy7977 514 TFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVIT 553 (1225)
Q Consensus 514 ~LrI~~i~~~~~l~ir~IpLg~TprrIay~p~s~~~vV~t 553 (1225)
.+++..+...... ...+-...+..++++|..+.++.++
T Consensus 288 ~i~~~~~~~~~~~--~~~~~~~~v~~~~~s~~~~~l~~~~ 325 (337)
T 1gxr_A 288 LLNAWRTPYGASI--FQSKESSSVLSCDISVDDKYIVTGS 325 (337)
T ss_dssp EEEEEETTTCCEE--EEEECSSCEEEEEECTTSCEEEEEE
T ss_pred cEEEEECCCCeEE--EEecCCCcEEEEEECCCCCEEEEec
Confidence 7888887664433 4456678899999999999888776
No 11
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=97.33 E-value=0.29 Score=55.90 Aligned_cols=243 Identities=8% Similarity=0.015 Sum_probs=133.1
Q ss_pred cCcEEEEecCCcceeeeecCCCCCcEEEEEec--CCEEEEE-ECCeEEEEEeeccceeEEeeeccCceeEEEEeccCCCC
Q psy7977 284 PSAAILISTESKARVSSWEPPNGKSISVVSCN--KNQVLCA-TGCDVYYLEVHGSEIKQLAHRALEYEVACLDISPLSNE 360 (1225)
Q Consensus 284 ~~~IRli~~~~~~~i~eW~~p~g~~Iv~As~n--~~~VlVa-sgg~Lv~feid~~~L~ev~~~~l~~eIScLai~~~~~~ 360 (1225)
...|++++.+.++....+..+.+..|.+.+.+ +.+++++ .++.+.++++..++.... .......|.|++..
T Consensus 112 d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~v~~~~~~----- 185 (401)
T 4aez_A 112 ERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRT-MAGHQARVGCLSWN----- 185 (401)
T ss_dssp TTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEE-ECCCSSCEEEEEEE-----
T ss_pred CCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEE-ecCCCCceEEEEEC-----
Confidence 34577888776555555555445568877775 4566666 578899988775532221 11345678888772
Q ss_pred CCCCccccCcEEEEEEecCCeEEEEeCCCc-ceEEeecCCCCCCcccEEEEeeCCeeEEEEEECCCcEEEEEEcCCCCcc
Q psy7977 361 ETSSEPAKAQLAAVGLWTDISARLLSLPSL-EEVCKEPLGGEIIPRSILMTCFEGHCYLLVALGDGSMFYFSLDPASGRL 439 (1225)
Q Consensus 361 ~~~~~~~~s~~laVG~w~d~tv~IlsL~~L-e~v~~~~L~~~~~P~SIll~~l~~~~~LlVGl~nG~L~~y~ld~~sg~L 439 (1225)
.++++.|.. |++|++|++..- ..+....-. .....++.+. ....+|+.|..||.+..|.+.. ++.
T Consensus 186 --------~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~-~~~v~~~~~~--~~~~~l~s~~~d~~v~iwd~~~--~~~ 251 (401)
T 4aez_A 186 --------RHVLSSGSR-SGAIHHHDVRIANHQIGTLQGH-SSEVCGLAWR--SDGLQLASGGNDNVVQIWDARS--SIP 251 (401)
T ss_dssp --------TTEEEEEET-TSEEEEEETTSSSCEEEEEECC-SSCEEEEEEC--TTSSEEEEEETTSCEEEEETTC--SSE
T ss_pred --------CCEEEEEcC-CCCEEEEecccCcceeeEEcCC-CCCeeEEEEc--CCCCEEEEEeCCCeEEEccCCC--CCc
Confidence 357888887 999999999742 222221110 1122233332 2567899999999999998753 211
Q ss_pred ccceeeeecCccceEEEEeeCCceEEEEec----CCcEEEEEc-CCee-EEeecccccccccccCCCCCCCCeEEEEe--
Q psy7977 440 TDKKKVTLGTQPTVLKTFRSLSTTNVFACS----DRPTVIYSS-NHKL-VFSNVNLRQVNHMCSLNAESYPDSLALAT-- 511 (1225)
Q Consensus 440 s~~k~~~LG~~pV~L~~~~~~g~~~Vfa~s----drP~liyss-~g~l-~~~pl~~~~v~~~s~F~se~~p~glv~vs-- 511 (1225)
. ....-...++.-..+...+ ..++++| +.-..+|.- .++. .... ....+.++ .|+. ....++.+.
T Consensus 252 ~--~~~~~~~~~v~~~~~~p~~-~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~-~~~~v~~~-~~s~--~~~~l~~~~g~ 324 (401)
T 4aez_A 252 K--FTKTNHNAAVKAVAWCPWQ-SNLLATGGGTMDKQIHFWNAATGARVNTVD-AGSQVTSL-IWSP--HSKEIMSTHGF 324 (401)
T ss_dssp E--EEECCCSSCCCEEEECTTS-TTEEEEECCTTTCEEEEEETTTCCEEEEEE-CSSCEEEE-EECS--SSSEEEEEECT
T ss_pred c--EEecCCcceEEEEEECCCC-CCEEEEecCCCCCEEEEEECCCCCEEEEEe-CCCcEEEE-EECC--CCCeEEEEeec
Confidence 1 1111122344333332222 3344443 333444442 2222 1111 11112211 2221 123455543
Q ss_pred -CCeEEEEEEcCCCCeeeEEEeC-CCcccEEEEecCCCEEEEEE
Q psy7977 512 -DSTFTFGTIDEIQKLHIRTVPL-GEAPRRIAYQESSQTFGVIT 553 (1225)
Q Consensus 512 -~~~LrI~~i~~~~~l~ir~IpL-g~TprrIay~p~s~~~vV~t 553 (1225)
++.+++..+..........++- ...+..++++|..+.++.+.
T Consensus 325 ~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~ 368 (401)
T 4aez_A 325 PDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAA 368 (401)
T ss_dssp TTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEEC
T ss_pred CCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEe
Confidence 6799999987643333333333 45789999999999887775
No 12
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=97.23 E-value=0.36 Score=52.74 Aligned_cols=285 Identities=15% Similarity=0.147 Sum_probs=147.4
Q ss_pred CeEEEEeecCCeEEEEEeeCCCCCCCceEEEeeeeccccceeeEEeeccccCCccEEEEEecCCCccEEEEeec---cee
Q psy7977 131 GVVFVGSRLGDSQLVKLNRSPDENGTYVSVMESFTNLAPIIDMVVVDLERQGQGQLVTCSGGFKEGSLRIIRNG---IGI 207 (1225)
Q Consensus 131 g~LFvGS~~GDS~L~~i~~~~ddd~~~l~v~d~l~NlgPI~D~~v~d~~~~~~~qLva~sG~g~~GsLrilR~G---I~~ 207 (1225)
.++|+++ .+|..+..|.... ...++.+..+..-+++..+++.. ....|++++.. ++.++++.-. =..
T Consensus 5 ~~l~~~~-~~~~~v~~~~~~~---~~~~~~~~~~~~~~~~~~~~~sp----dg~~l~~~~~~--~~~v~~~~~~~~~~~~ 74 (343)
T 1ri6_A 5 QTVYIAS-PESQQIHVWNLNH---EGALTLTQVVDVPGQVQPMVVSP----DKRYLYVGVRP--EFRVLAYRIAPDDGAL 74 (343)
T ss_dssp EEEEEEE-GGGTEEEEEEECT---TSCEEEEEEEECSSCCCCEEECT----TSSEEEEEETT--TTEEEEEEECTTTCCE
T ss_pred EEEEEeC-CCCCeEEEEEECC---CCcEEEeeeEecCCCCceEEECC----CCCEEEEeecC--CCeEEEEEecCCCCce
Confidence 4667764 3455555554421 11356666777777777777643 12235544432 3788875532 233
Q ss_pred eEEEEeeCCCcceEeEeeeCCCCCCccEEEEEcC-Cc-eEEEEEc-Cceee---ee------ccCCcccccCeEEEEeeC
Q psy7977 208 EEHACIDLPGIKGIWALSIGSPKNLDNTLVLSFV-GH-TRVLTLS-GAEVE---ET------EMGGFTSDQQTFYCGNVD 275 (1225)
Q Consensus 208 ~~~~s~eLpgv~~iWtl~~~~~~~~d~yLVlSf~-~~-T~Vl~i~-ge~ve---Ev------~~sgF~~~~~TL~ag~l~ 275 (1225)
+.+..++.++ ..+.+.... ..++|+++.. +. -.++.++ +...+ .+ ....|..++..|+++...
T Consensus 75 ~~~~~~~~~~--~~~~~~~s~---dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~ 149 (343)
T 1ri6_A 75 TFAAESALPG--SLTHISTDH---QGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALK 149 (343)
T ss_dssp EEEEEEECSS--CCSEEEECT---TSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGG
T ss_pred eeccccccCC--CCcEEEEcC---CCCEEEEEecCCCeEEEEECCCCccccccccccCCCCceEEEECCCCCEEEEecCC
Confidence 4444555443 333333322 3456655543 33 3355441 11111 11 112244555666666543
Q ss_pred CCeEEEEccCcEEEEecCC-cce--ee--eecCCCCCcEEEEEec--CCEEEEE--ECCeEEEEEeec--cceeEEeeec
Q psy7977 276 PRTVLQVTPSAAILISTES-KAR--VS--SWEPPNGKSISVVSCN--KNQVLCA--TGCDVYYLEVHG--SEIKQLAHRA 344 (1225)
Q Consensus 276 ~~~iVQVT~~~IRli~~~~-~~~--i~--eW~~p~g~~Iv~As~n--~~~VlVa--sgg~Lv~feid~--~~L~ev~~~~ 344 (1225)
++ .|++++... ++. +. .+..+.+..+...+.. +.+++++ .++.+.+++++. +.+.......
T Consensus 150 ~~--------~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~ 221 (343)
T 1ri6_A 150 QD--------RICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLD 221 (343)
T ss_dssp GT--------EEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEE
T ss_pred CC--------EEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeecc
Confidence 33 355555433 211 11 3333334445554443 4567666 467888888864 3443322211
Q ss_pred -c------CceeEEEEeccCCCCCCCCccccCcEEEEEEecCCeEEEEeCC----CcceEEeecCCCCCCcccEEEEeeC
Q psy7977 345 -L------EYEVACLDISPLSNEETSSEPAKAQLAAVGLWTDISARLLSLP----SLEEVCKEPLGGEIIPRSILMTCFE 413 (1225)
Q Consensus 345 -l------~~eIScLai~~~~~~~~~~~~~~s~~laVG~w~d~tv~IlsL~----~Le~v~~~~L~~~~~P~SIll~~l~ 413 (1225)
+ ...+.++++.+- .++++++...++.+.+|++. .++.+...... ..|.++.+..
T Consensus 222 ~~~~~~~~~~~~~~i~~s~d-----------g~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~--~~~~~~~~s~-- 286 (343)
T 1ri6_A 222 MMPENFSDTRWAADIHITPD-----------GRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTE--TQPRGFNVDH-- 286 (343)
T ss_dssp CSCTTCCSCCCEEEEEECTT-----------SSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECS--SSCCCEEECT--
T ss_pred ccCccccccCCccceEECCC-----------CCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCC--CccceEEECC--
Confidence 1 124556777542 45677777669999999997 23443333332 2366776543
Q ss_pred CeeEEEEEE-CCCcEEEEEEcCCCCccccceeeeecCccce
Q psy7977 414 GHCYLLVAL-GDGSMFYFSLDPASGRLTDKKKVTLGTQPTV 453 (1225)
Q Consensus 414 ~~~~LlVGl-~nG~L~~y~ld~~sg~Ls~~k~~~LG~~pV~ 453 (1225)
...+|+++. .+|.+..|.++..+|++........|..|.-
T Consensus 287 dg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~g~~p~~ 327 (343)
T 1ri6_A 287 SGKYLIAAGQKSHHISVYEIVGEQGLLHEKGRYAVGQGPMW 327 (343)
T ss_dssp TSSEEEEECTTTCEEEEEEEETTTTEEEEEEEEECSSSCCE
T ss_pred CCCEEEEecCCCCeEEEEEEcCCCceeeEccccccCCCCee
Confidence 346788887 5799999999987776543333333444443
No 13
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=97.18 E-value=0.08 Score=58.39 Aligned_cols=226 Identities=14% Similarity=0.118 Sum_probs=125.5
Q ss_pred CcEEEEEecCC----E-EEEE-ECCeEEEEEeec-cceeEEeeeccCceeEEEEeccCCCCCCCCccccCcEEEEEEecC
Q psy7977 307 KSISVVSCNKN----Q-VLCA-TGCDVYYLEVHG-SEIKQLAHRALEYEVACLDISPLSNEETSSEPAKAQLAAVGLWTD 379 (1225)
Q Consensus 307 ~~Iv~As~n~~----~-VlVa-sgg~Lv~feid~-~~L~ev~~~~l~~eIScLai~~~~~~~~~~~~~~s~~laVG~w~d 379 (1225)
..|.+.+.+.. . ++.+ .++.|.+++++. +.........-...|.|++..+- .++++.|.. |
T Consensus 40 ~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~-----------~~~l~s~~~-d 107 (368)
T 3mmy_A 40 DSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDD-----------GSKVFTASC-D 107 (368)
T ss_dssp SCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTT-----------SSEEEEEET-T
T ss_pred CceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcC-----------CCEEEEEcC-C
Confidence 46787777643 4 4444 578999999876 32221222234678999998752 467888887 9
Q ss_pred CeEEEEeCCCcceEEeecCCCCCCcccEEEEeeCCeeEEEEEECCCcEEEEEEcCCCCccccceeeeecCccceEEEEee
Q psy7977 380 ISARLLSLPSLEEVCKEPLGGEIIPRSILMTCFEGHCYLLVALGDGSMFYFSLDPASGRLTDKKKVTLGTQPTVLKTFRS 459 (1225)
Q Consensus 380 ~tv~IlsL~~Le~v~~~~L~~~~~P~SIll~~l~~~~~LlVGl~nG~L~~y~ld~~sg~Ls~~k~~~LG~~pV~L~~~~~ 459 (1225)
++|++|++.+.+.+....- .....++.+..-....+|+.+..||.+..|.+.. ++.. .... +... ...+..
T Consensus 108 g~v~iwd~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~--~~~~--~~~~-~~~~--~~~~~~ 178 (368)
T 3mmy_A 108 KTAKMWDLSSNQAIQIAQH--DAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRS--SNPM--MVLQ-LPER--CYCADV 178 (368)
T ss_dssp SEEEEEETTTTEEEEEEEC--SSCEEEEEEEECSSCEEEEEEETTSEEEEECSSC--SSCS--EEEE-CSSC--EEEEEE
T ss_pred CcEEEEEcCCCCceeeccc--cCceEEEEEEeCCCCCEEEEccCCCcEEEEECCC--CcEE--EEEe-cCCC--ceEEEe
Confidence 9999999987554443222 1223445543334567899999999998887653 2211 1111 1111 111111
Q ss_pred CCceEEEEecCCcEEEEEcCCe-eEEeeccc---ccccccccCCC-CCCCCeEEEEe-CCeEEEEEEcCCCC-eeeEEEe
Q psy7977 460 LSTTNVFACSDRPTVIYSSNHK-LVFSNVNL---RQVNHMCSLNA-ESYPDSLALAT-DSTFTFGTIDEIQK-LHIRTVP 532 (1225)
Q Consensus 460 ~g~~~Vfa~sdrP~liyss~g~-l~~~pl~~---~~v~~~s~F~s-e~~p~glv~vs-~~~LrI~~i~~~~~-l~ir~Ip 532 (1225)
.+...+.+.++.-..+|.-... ..+..+.. .....++-+.. ...+++++..+ ++.+++..+..... .....+.
T Consensus 179 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~ 258 (368)
T 3mmy_A 179 IYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFK 258 (368)
T ss_dssp ETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEE
T ss_pred cCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeee
Confidence 2233444555555555543221 12221111 11222222222 22345565554 46888888876532 2333333
Q ss_pred CCC-------------cccEEEEecCCCEEEEEE
Q psy7977 533 LGE-------------APRRIAYQESSQTFGVIT 553 (1225)
Q Consensus 533 Lg~-------------TprrIay~p~s~~~vV~t 553 (1225)
-.. .+..++++|..+.++.+.
T Consensus 259 ~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~ 292 (368)
T 3mmy_A 259 CHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVG 292 (368)
T ss_dssp CSEEC----CCCEEECCEEEEEECTTTCCEEEEE
T ss_pred eeecccccccccccccceEEEEEecCCCEEEEEc
Confidence 332 588999999998887776
No 14
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=97.12 E-value=0.47 Score=52.10 Aligned_cols=135 Identities=16% Similarity=0.170 Sum_probs=80.3
Q ss_pred cEEEEecCCcceeeeecCCCCCcEEEEEec--CCEEEEE-ECCeEEEEEeecc-ceeEEeeeccCceeEEEEeccCCCCC
Q psy7977 286 AAILISTESKARVSSWEPPNGKSISVVSCN--KNQVLCA-TGCDVYYLEVHGS-EIKQLAHRALEYEVACLDISPLSNEE 361 (1225)
Q Consensus 286 ~IRli~~~~~~~i~eW~~p~g~~Iv~As~n--~~~VlVa-sgg~Lv~feid~~-~L~ev~~~~l~~eIScLai~~~~~~~ 361 (1225)
.||+.+...++.+..+..- ...|.+.+.+ +++++.+ .++.+.++++..+ .+.. ....-...|.|+++.+.
T Consensus 78 ~i~vwd~~~~~~~~~~~~h-~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~-~~~~h~~~v~~v~~~p~---- 151 (304)
T 2ynn_A 78 RIRVFNYNTGEKVVDFEAH-PDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQ-TFEGHEHFVMCVAFNPK---- 151 (304)
T ss_dssp EEEEEETTTCCEEEEEECC-SSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEE-EECCCCSCEEEEEECTT----
T ss_pred EEEEEECCCCcEEEEEeCC-CCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhh-hhcccCCcEEEEEECCC----
Confidence 4666666555555555432 2346666664 3455545 5788998887654 2221 11223467899998752
Q ss_pred CCCccccCcEEEEEEecCCeEEEEeCCCcceEEeecCCCCCCcccEEEEeeCCeeEEEEEECCCcEEEEEEc
Q psy7977 362 TSSEPAKAQLAAVGLWTDISARLLSLPSLEEVCKEPLGGEIIPRSILMTCFEGHCYLLVALGDGSMFYFSLD 433 (1225)
Q Consensus 362 ~~~~~~~s~~laVG~w~d~tv~IlsL~~Le~v~~~~L~~~~~P~SIll~~l~~~~~LlVGl~nG~L~~y~ld 433 (1225)
....++.|.. |++|++|++...................+.+...++..+|+.|..||.+..+.+.
T Consensus 152 ------~~~~l~sgs~-D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~ 216 (304)
T 2ynn_A 152 ------DPSTFASGCL-DRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQ 216 (304)
T ss_dssp ------CTTEEEEEET-TSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETT
T ss_pred ------CCCEEEEEeC-CCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCC
Confidence 2467888887 9999999996533322211110011122333333356789999999999988765
No 15
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.08 E-value=0.87 Score=56.76 Aligned_cols=137 Identities=15% Similarity=0.128 Sum_probs=85.6
Q ss_pred CcEEEEecCCcceeeeecCCCCCcEEEEEec--CCEEEEE-ECCeEEEEEeeccceeEEeeeccCceeEEEEeccCCCCC
Q psy7977 285 SAAILISTESKARVSSWEPPNGKSISVVSCN--KNQVLCA-TGCDVYYLEVHGSEIKQLAHRALEYEVACLDISPLSNEE 361 (1225)
Q Consensus 285 ~~IRli~~~~~~~i~eW~~p~g~~Iv~As~n--~~~VlVa-sgg~Lv~feid~~~L~ev~~~~l~~eIScLai~~~~~~~ 361 (1225)
..|++++...++.+..+... ...|.+.+.+ +++++.+ .++.+.+++++.+.-.......-...|.|++..+.
T Consensus 77 g~i~vw~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~---- 151 (814)
T 3mkq_A 77 FRIRVFNYNTGEKVVDFEAH-PDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPK---- 151 (814)
T ss_dssp SEEEEEETTTCCEEEEEECC-SSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETT----
T ss_pred CeEEEEECCCCcEEEEEecC-CCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcC----
Confidence 45777777665666665532 2357777765 4566666 57899999887542111112233567889988652
Q ss_pred CCCccccCcEEEEEEecCCeEEEEeCCCcceEEeecCCCCCCcccEEEEeeCCeeEEEEEECCCcEEEEEEc
Q psy7977 362 TSSEPAKAQLAAVGLWTDISARLLSLPSLEEVCKEPLGGEIIPRSILMTCFEGHCYLLVALGDGSMFYFSLD 433 (1225)
Q Consensus 362 ~~~~~~~s~~laVG~w~d~tv~IlsL~~Le~v~~~~L~~~~~P~SIll~~l~~~~~LlVGl~nG~L~~y~ld 433 (1225)
....++.|.. |++|++|++...+...............+.+...++..+|++|..+|.+..|.+.
T Consensus 152 ------~~~~l~~~~~-dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~ 216 (814)
T 3mkq_A 152 ------DPSTFASGCL-DRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQ 216 (814)
T ss_dssp ------EEEEEEEEET-TSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETT
T ss_pred ------CCCEEEEEeC-CCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECC
Confidence 2457888886 9999999997543332221111122234444433356799999999999988764
No 16
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=97.07 E-value=0.46 Score=51.05 Aligned_cols=270 Identities=13% Similarity=0.062 Sum_probs=139.9
Q ss_pred cceeEEEecCCeEEEEeecCCeEEEEEeeCCCCCCCceEEEeee-eccccceeeEEeeccccCCccEEEEEecCCCccEE
Q psy7977 121 IPECLTYLDNGVVFVGSRLGDSQLVKLNRSPDENGTYVSVMESF-TNLAPIIDMVVVDLERQGQGQLVTCSGGFKEGSLR 199 (1225)
Q Consensus 121 ~~SsL~~L~~g~LFvGS~~GDS~L~~i~~~~ddd~~~l~v~d~l-~NlgPI~D~~v~d~~~~~~~qLva~sG~g~~GsLr 199 (1225)
.-.++..-++++|+.|+..|.=.++.+... .....+ ..-++|..+++.. ..+.+++++ .+|.++
T Consensus 20 ~v~~~~~~~~~~l~s~~~dg~v~vw~~~~~--------~~~~~~~~~~~~v~~~~~~~-----~~~~l~~~~--~dg~i~ 84 (313)
T 3odt_A 20 DVRDVVAVDDSKVASVSRDGTVRLWSKDDQ--------WLGTVVYTGQGFLNSVCYDS-----EKELLLFGG--KDTMIN 84 (313)
T ss_dssp CEEEEEEEETTEEEEEETTSEEEEEEESSS--------EEEEEEEECSSCEEEEEEET-----TTTEEEEEE--TTSCEE
T ss_pred CcEEEEecCCCEEEEEEcCCcEEEEECCCC--------EEEEEeecCCccEEEEEECC-----CCCEEEEec--CCCeEE
Confidence 345666656778888887665555555321 222333 3357888887753 234444443 356777
Q ss_pred EEeecce--eeEEEEeeCCCcceEeEeeeCCCCCCccEEEEEcCCceE-EEEEcCceeeeeccCCcccccCeEEEEeeCC
Q psy7977 200 IIRNGIG--IEEHACIDLPGIKGIWALSIGSPKNLDNTLVLSFVGHTR-VLTLSGAEVEETEMGGFTSDQQTFYCGNVDP 276 (1225)
Q Consensus 200 ilR~GI~--~~~~~s~eLpgv~~iWtl~~~~~~~~d~yLVlSf~~~T~-Vl~i~ge~veEv~~sgF~~~~~TL~ag~l~~ 276 (1225)
+.+---. .+....+. ..-..++.+... ..+++.+..+.+. ++. .++.+..... .......+......+
T Consensus 85 ~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~-----~~~l~~~~~d~~i~~~d-~~~~~~~~~~--~~~~v~~~~~~~~~~ 155 (313)
T 3odt_A 85 GVPLFATSGEDPLYTLI-GHQGNVCSLSFQ-----DGVVISGSWDKTAKVWK-EGSLVYNLQA--HNASVWDAKVVSFSE 155 (313)
T ss_dssp EEETTCCTTSCC-CEEC-CCSSCEEEEEEE-----TTEEEEEETTSEEEEEE-TTEEEEEEEC--CSSCEEEEEEEETTT
T ss_pred EEEeeecCCCCcccchh-hcccCEEEEEec-----CCEEEEEeCCCCEEEEc-CCcEEEeccc--CCCceeEEEEccCCC
Confidence 6542211 11111111 112344545431 3466665555543 333 2222222211 011111111111122
Q ss_pred CeEEEEc-cCcEEEEecCCcceeeeecCCCCCcEEEEEec-CCEEEEE-ECCeEEEEEeeccceeEEeeeccCceeEEEE
Q psy7977 277 RTVLQVT-PSAAILISTESKARVSSWEPPNGKSISVVSCN-KNQVLCA-TGCDVYYLEVHGSEIKQLAHRALEYEVACLD 353 (1225)
Q Consensus 277 ~~iVQVT-~~~IRli~~~~~~~i~eW~~p~g~~Iv~As~n-~~~VlVa-sgg~Lv~feid~~~L~ev~~~~l~~eIScLa 353 (1225)
+.++=.. ...|++++.. +....+..+....|.+.+.. +..++.+ .++.|.++++..++.... -......|.|++
T Consensus 156 ~~l~~~~~d~~i~i~d~~--~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~i~~~~ 232 (313)
T 3odt_A 156 NKFLTASADKTIKLWQND--KVIKTFSGIHNDVVRHLAVVDDGHFISCSNDGLIKLVDMHTGDVLRT-YEGHESFVYCIK 232 (313)
T ss_dssp TEEEEEETTSCEEEEETT--EEEEEECSSCSSCEEEEEEEETTEEEEEETTSEEEEEETTTCCEEEE-EECCSSCEEEEE
T ss_pred CEEEEEECCCCEEEEecC--ceEEEEeccCcccEEEEEEcCCCeEEEccCCCeEEEEECCchhhhhh-hhcCCceEEEEE
Confidence 2333333 2457777744 56666665455567776665 4454444 578999998875532221 112356789998
Q ss_pred eccCCCCCCCCccccCcEEEEEEecCCeEEEEeCCCcceEEeecCCCCCCcccEEEEeeCCeeEEEEEECCCcEEEEEEc
Q psy7977 354 ISPLSNEETSSEPAKAQLAAVGLWTDISARLLSLPSLEEVCKEPLGGEIIPRSILMTCFEGHCYLLVALGDGSMFYFSLD 433 (1225)
Q Consensus 354 i~~~~~~~~~~~~~~s~~laVG~w~d~tv~IlsL~~Le~v~~~~L~~~~~P~SIll~~l~~~~~LlVGl~nG~L~~y~ld 433 (1225)
+.+. . .++.|.. |++|++|++.+.+.+...... .....++.+.. ... ++++..||.+..|.+.
T Consensus 233 ~~~~-----------~-~l~~~~~-dg~v~iwd~~~~~~~~~~~~~-~~~i~~~~~~~--~~~-~~~~~~dg~i~iw~~~ 295 (313)
T 3odt_A 233 LLPN-----------G-DIVSCGE-DRTVRIWSKENGSLKQVITLP-AISIWSVDCMS--NGD-IIVGSSDNLVRIFSQE 295 (313)
T ss_dssp ECTT-----------S-CEEEEET-TSEEEEECTTTCCEEEEEECS-SSCEEEEEECT--TSC-EEEEETTSCEEEEESC
T ss_pred EecC-----------C-CEEEEec-CCEEEEEECCCCceeEEEecc-CceEEEEEEcc--CCC-EEEEeCCCcEEEEeCC
Confidence 8652 2 3677776 999999999876554433222 11222333322 222 7789999999999876
Q ss_pred C
Q psy7977 434 P 434 (1225)
Q Consensus 434 ~ 434 (1225)
.
T Consensus 296 ~ 296 (313)
T 3odt_A 296 K 296 (313)
T ss_dssp G
T ss_pred C
Confidence 3
No 17
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=97.07 E-value=0.28 Score=56.07 Aligned_cols=176 Identities=14% Similarity=0.172 Sum_probs=105.7
Q ss_pred EEEEEEECCCCcEEEEEECCCCCceEEEEEEEecCCCCeEEEEEeeeeCCCCCCCcceEEEEEEEeCCcEEEEEEEEecC
Q psy7977 1005 HNLLIIDQNTFEILHAHQLFPGEYALSLISSKFGEDPNTYFVLGTAVVHPEENEPKQGRIIIFHYDDGKLQQIAEKEIKG 1084 (1225)
Q Consensus 1005 s~irlvdp~t~~~i~~~eL~~nE~~~si~~v~~~~~~~~~lvVGTa~~~~eed~~~~GrI~vf~i~~~kL~lv~~~ev~G 1084 (1225)
+.|+++|..+.+.+..+.. ...+.+ +.+..++ .+++++...-.. -....|.|++|++..+++ +......+
T Consensus 234 ~~i~~~d~~~~~~~~~~~~--~~~~~~---~~~~~~g-~~l~~~~~~~~~--~~~~dg~i~~~d~~~~~~--~~~~~~~~ 303 (433)
T 3bws_A 234 EDISVIDRKTKLEIRKTDK--IGLPRG---LLLSKDG-KELYIAQFSASN--QESGGGRLGIYSMDKEKL--IDTIGPPG 303 (433)
T ss_dssp TEEEEEETTTTEEEEECCC--CSEEEE---EEECTTS-SEEEEEEEESCT--TCSCCEEEEEEETTTTEE--EEEEEEEE
T ss_pred CcEEEEECCCCcEEEEecC--CCCceE---EEEcCCC-CEEEEEECCCCc--cccCCCeEEEEECCCCcE--EeeccCCC
Confidence 3689999988888766554 333433 4454433 466666532110 112579999999876643 23333445
Q ss_pred ceeeeccc-cC-eEEEE--eCCEEEEEEcCCCceee-eeecccceeEEEEEE--EECCEEEEeecccc-E----------
Q psy7977 1085 ACYSMCEF-NG-KLLAS--INSTVRLFEWTNEKELR-LECSHFNNIIALFLK--VKGDFILVGDLMRS-L---------- 1146 (1225)
Q Consensus 1085 ~v~al~~f-~G-~LLa~--vg~~l~vy~l~~~~~L~-~e~~~~~~~i~~~l~--~~g~~IlvGD~~kS-v---------- 1146 (1225)
.+.+++-- +| +|+++ -..++++|++...+.+. ... ... +..+. ..|.++++++.... +
T Consensus 304 ~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~~---~~~-~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~ 379 (433)
T 3bws_A 304 NKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIPV---FDK-PNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLV 379 (433)
T ss_dssp CEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEEC---SSS-EEEEEECTTSSEEEEEECCCCCTTTCTTSCCSS
T ss_pred CcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEecC---CCC-CCeEEEcCCCCEEEEEecCCCcccccccccccc
Confidence 66665522 45 56555 45799999998666544 211 111 23333 34678888886542 1
Q ss_pred --EEEEEecCCCeEEEEeccCCCceeEEEEeeeCC-cEEEEc-CCCcEEEEEeC
Q psy7977 1147 --TLLQYKTMEGSFEEISRDYNPNWMTSIEILDDE-LFLGAE-NSYNLFICQKD 1196 (1225)
Q Consensus 1147 --~~l~y~~~~~~L~~~arD~~~~wvta~~~Ld~d-t~l~aD-~~gNl~vl~~~ 1196 (1225)
.+..|+.+..+....-+. ..+++++.+-.++ .+++++ .++.+.+++.+
T Consensus 380 dg~v~~~d~~~~~~~~~~~~--~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~ 431 (433)
T 3bws_A 380 LGKVYVIDTTTDTVKEFWEA--GNQPTGLDVSPDNRYLVISDFLDHQIRVYRRD 431 (433)
T ss_dssp CCEEEEEETTTTEEEEEEEC--SSSEEEEEECTTSCEEEEEETTTTEEEEEEET
T ss_pred ceEEEEEECCCCcEEEEecC--CCCCceEEEcCCCCEEEEEECCCCeEEEEEec
Confidence 466678777666554443 4467888886665 455565 48999998875
No 18
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=97.06 E-value=0.51 Score=51.49 Aligned_cols=189 Identities=10% Similarity=0.037 Sum_probs=90.3
Q ss_pred CceeEEEEeccCCCCCCCCccccCcEEEEEEecCCeEEEEeCCCcce---EEeecCCCCCCcccEEEEee-CCeeEEEEE
Q psy7977 346 EYEVACLDISPLSNEETSSEPAKAQLAAVGLWTDISARLLSLPSLEE---VCKEPLGGEIIPRSILMTCF-EGHCYLLVA 421 (1225)
Q Consensus 346 ~~eIScLai~~~~~~~~~~~~~~s~~laVG~w~d~tv~IlsL~~Le~---v~~~~L~~~~~P~SIll~~l-~~~~~LlVG 421 (1225)
...|+||++.|. ..++++-|.. |++|+||++...+. .....+.+ -...|.-+.+ +...+|+.|
T Consensus 38 ~~~V~~v~~sp~----------~~~~l~S~s~-D~~i~vWd~~~~~~~~~~~~~~l~~--h~~~V~~~~~s~dg~~l~s~ 104 (340)
T 4aow_A 38 NGWVTQIATTPQ----------FPDMILSASR-DKTIIMWKLTRDETNYGIPQRALRG--HSHFVSDVVISSDGQFALSG 104 (340)
T ss_dssp SSCEEEEEECTT----------CTTEEEEEET-TSCEEEEEECCSSSCSEEEEEEECC--CSSCEEEEEECTTSSEEEEE
T ss_pred cCCEEEEEEeCC----------CCCEEEEEcC-CCeEEEEECCCCCcccceeeEEEeC--CCCCEEEEEECCCCCEEEEE
Confidence 578999999762 2467888886 99999999975332 22223321 1122322233 346789999
Q ss_pred ECCCcEEEEEEcCCCCccccceeeeecCccceEEEEeeCCceEEEEecCCcEEEEEcCCeeEEee-c-ccccccccccCC
Q psy7977 422 LGDGSMFYFSLDPASGRLTDKKKVTLGTQPTVLKTFRSLSTTNVFACSDRPTVIYSSNHKLVFSN-V-NLRQVNHMCSLN 499 (1225)
Q Consensus 422 l~nG~L~~y~ld~~sg~Ls~~k~~~LG~~pV~L~~~~~~g~~~Vfa~sdrP~liyss~g~l~~~p-l-~~~~v~~~s~F~ 499 (1225)
..||.+..+..... ... ........++....+...+..-+.+..++...++...+...... . ..........|.
T Consensus 105 ~~d~~i~~~~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~ 180 (340)
T 4aow_A 105 SWDGTLRLWDLTTG--TTT--RRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFS 180 (340)
T ss_dssp ETTSEEEEEETTTT--EEE--EEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEEC
T ss_pred cccccceEEeeccc--cee--eeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEc
Confidence 99999988775432 110 01111111222222211221212222234444444322221111 1 111111122232
Q ss_pred CCCCCCeEEEE-eCCeEEEEEEcCCCCeeeEEEe-CCCcccEEEEecCCCEEEEEE
Q psy7977 500 AESYPDSLALA-TDSTFTFGTIDEIQKLHIRTVP-LGEAPRRIAYQESSQTFGVIT 553 (1225)
Q Consensus 500 se~~p~glv~v-s~~~LrI~~i~~~~~l~ir~Ip-Lg~TprrIay~p~s~~~vV~t 553 (1225)
.......++.. .++.+++..+.... ..+++. -...++.++++|..+.++.+.
T Consensus 181 ~~~~~~~~~s~~~d~~i~i~d~~~~~--~~~~~~~h~~~v~~~~~s~~~~~l~s~s 234 (340)
T 4aow_A 181 PNSSNPIIVSCGWDKLVKVWNLANCK--LKTNHIGHTGYLNTVTVSPDGSLCASGG 234 (340)
T ss_dssp SCSSSCEEEEEETTSCEEEEETTTTE--EEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred cCCCCcEEEEEcCCCEEEEEECCCCc--eeeEecCCCCcEEEEEECCCCCEEEEEe
Confidence 22222223333 34577776654321 222222 234678889999888877775
No 19
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=96.98 E-value=0.86 Score=52.68 Aligned_cols=298 Identities=11% Similarity=0.070 Sum_probs=156.0
Q ss_pred CCeEEEEEcCCCEEEEEEEeCcccCCceeeeecEEEEecccCcceeEEEecCCeEEEEeecCCeEEEEEeeCCCCCCCce
Q psy7977 79 SERYLLGDLAGRLFMLLLEKEEKMDGTFSVKEPKVELLGEISIPECLTYLDNGVVFVGSRLGDSQLVKLNRSPDENGTYV 158 (1225)
Q Consensus 79 ~~~~LL~~e~G~Ly~l~l~~d~~~~Gr~~Vs~i~i~~~~tis~~SsL~~L~~g~LFvGS~~GDS~L~~i~~~~ddd~~~l 158 (1225)
++.++.+..+|.+..-.+. +++ .+.. .-+......++....+++++.||..|.=.++.+.. -
T Consensus 132 ~~~l~sgs~dg~i~vwd~~-----~~~-~~~~----~~~h~~~V~~l~~~~~~~l~s~s~dg~i~vwd~~~--------~ 193 (464)
T 3v7d_B 132 DNYVITGADDKMIRVYDSI-----NKK-FLLQ----LSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKK--------G 193 (464)
T ss_dssp TTEEEEEETTSCEEEEETT-----TTE-EEEE----ECCCSSCEEEEEECSTTEEEEEETTSCEEEEETTT--------T
T ss_pred CCEEEEEcCCCcEEEEECC-----CCc-EEEE----EeCCCcCEEEEEEcCCCEEEEEeCCCCEEEEECCC--------C
Confidence 4566677888888766432 132 1111 11334455788887788888888766655554432 1
Q ss_pred EEEeeee-ccccceeeEEeeccccCCccEEEEEecCCCccEEEEeecceeeE----------------------EEEeeC
Q psy7977 159 SVMESFT-NLAPIIDMVVVDLERQGQGQLVTCSGGFKEGSLRIIRNGIGIEE----------------------HACIDL 215 (1225)
Q Consensus 159 ~v~d~l~-NlgPI~D~~v~d~~~~~~~qLva~sG~g~~GsLrilR~GI~~~~----------------------~~s~eL 215 (1225)
+.+..+. .-++|..+.+... .....+++++ .+|.+++..-.-.-.. .... .
T Consensus 194 ~~~~~~~~h~~~v~~l~~~~~---~~~~~l~s~s--~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 267 (464)
T 3v7d_B 194 CCTHVFEGHNSTVRCLDIVEY---KNIKYIVTGS--RDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVL-R 267 (464)
T ss_dssp EEEEEECCCSSCEEEEEEEES---SSCEEEEEEE--TTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEE-C
T ss_pred cEEEEECCCCCccEEEEEecC---CCCCEEEEEc--CCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEc-c
Confidence 3444554 4578888877642 1223333333 3577777653321110 0000 0
Q ss_pred CCcceEeEeeeCCCCCCccEEEEEcCCce-EEEEEcC-ceeeeec-------cCCcccccCeEEEEeeCCCeEEEEccCc
Q psy7977 216 PGIKGIWALSIGSPKNLDNTLVLSFVGHT-RVLTLSG-AEVEETE-------MGGFTSDQQTFYCGNVDPRTVLQVTPSA 286 (1225)
Q Consensus 216 pgv~~iWtl~~~~~~~~d~yLVlSf~~~T-~Vl~i~g-e~veEv~-------~sgF~~~~~TL~ag~l~~~~iVQVT~~~ 286 (1225)
.....+..+. ....+++....+.+ +++.+.. +.+.... .-.|..+...+++|.. ...
T Consensus 268 ~~~~~v~~~~-----~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~---------dg~ 333 (464)
T 3v7d_B 268 GHMASVRTVS-----GHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASM---------DTT 333 (464)
T ss_dssp CCSSCEEEEE-----EETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEET---------TSC
T ss_pred CccceEEEEc-----CCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeC---------CCc
Confidence 1112222222 12356666554444 3443321 1122211 1112222233333322 245
Q ss_pred EEEEecCCcceeeeecCCCCCcEEEEEecCCEEEEE-ECCeEEEEEeeccceeEEeeeccCceeEEEEeccCCCCCCCCc
Q psy7977 287 AILISTESKARVSSWEPPNGKSISVVSCNKNQVLCA-TGCDVYYLEVHGSEIKQLAHRALEYEVACLDISPLSNEETSSE 365 (1225)
Q Consensus 287 IRli~~~~~~~i~eW~~p~g~~Iv~As~n~~~VlVa-sgg~Lv~feid~~~L~ev~~~~l~~eIScLai~~~~~~~~~~~ 365 (1225)
|++++...++.+..+... ...|.+.+.++.+++.+ .++.|.++++...... ........+.++++.+
T Consensus 334 i~vwd~~~~~~~~~~~~h-~~~v~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~--~~~~~~~~~~~~~~~~--------- 401 (464)
T 3v7d_B 334 IRIWDLENGELMYTLQGH-TALVGLLRLSDKFLVSAAADGSIRGWDANDYSRK--FSYHHTNLSAITTFYV--------- 401 (464)
T ss_dssp EEEEETTTTEEEEEECCC-SSCEEEEEECSSEEEEEETTSEEEEEETTTCCEE--EEEECTTCCCEEEEEE---------
T ss_pred EEEEECCCCcEEEEEeCC-CCcEEEEEEcCCEEEEEeCCCcEEEEECCCCcee--eeecCCCCccEEEEEe---------
Confidence 888887766677777643 34688888888777777 6889999987754221 1122334455555544
Q ss_pred cccCcEEEEEEecCCeEEEEeCCCcceEEeecCCCCCCcccEEEEeeCCeeEEEEEECCCcEEEEEEc
Q psy7977 366 PAKAQLAAVGLWTDISARLLSLPSLEEVCKEPLGGEIIPRSILMTCFEGHCYLLVALGDGSMFYFSLD 433 (1225)
Q Consensus 366 ~~~s~~laVG~w~d~tv~IlsL~~Le~v~~~~L~~~~~P~SIll~~l~~~~~LlVGl~nG~L~~y~ld 433 (1225)
...+++.|. |++|+||++.+-+.+.....+......++.+ .+...+..+-.+|..+...+|
T Consensus 402 --~~~~l~~~~--dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~---~~~~l~~~~~~~g~~~i~~ld 462 (464)
T 3v7d_B 402 --SDNILVSGS--ENQFNIYNLRSGKLVHANILKDADQIWSVNF---KGKTLVAAVEKDGQSFLEILD 462 (464)
T ss_dssp --CSSEEEEEE--TTEEEEEETTTCCEEESCTTTTCSEEEEEEE---ETTEEEEEEEETTEEEEEEEE
T ss_pred --CCCEEEEec--CCeEEEEECCCCcEEehhhccCCCcEEEEEe---cCCEEEEEEEeCCeEEEEEee
Confidence 245677765 8999999998866665432321112223333 345555666677777666655
No 20
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=96.96 E-value=0.28 Score=53.87 Aligned_cols=176 Identities=12% Similarity=0.153 Sum_probs=103.9
Q ss_pred EEEEEECCCCc-EEEEEECCCCC---ceEEEEEEE-ecCCCCeEEEEEeeeeCCCCCCCcceEEEEEEEeCCcEEEEEEE
Q psy7977 1006 NLLIIDQNTFE-ILHAHQLFPGE---YALSLISSK-FGEDPNTYFVLGTAVVHPEENEPKQGRIIIFHYDDGKLQQIAEK 1080 (1225)
Q Consensus 1006 ~irlvdp~t~~-~i~~~eL~~nE---~~~si~~v~-~~~~~~~~lvVGTa~~~~eed~~~~GrI~vf~i~~~kL~lv~~~ 1080 (1225)
.|++.|..+.+ .+..+....++ .+.+++... |. ....++++|+. .|.|++|++..+++ +...
T Consensus 140 ~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~l~~~~~----------d~~i~i~d~~~~~~--~~~~ 206 (357)
T 3i2n_A 140 TVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYN-QEERVVCAGYD----------NGDIKLFDLRNMAL--RWET 206 (357)
T ss_dssp CEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC--CCCEEEEEET----------TSEEEEEETTTTEE--EEEE
T ss_pred eEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccC-CCCCEEEEEcc----------CCeEEEEECccCce--eeec
Confidence 46666655544 44444443332 344443211 32 34467887752 47899999876554 4445
Q ss_pred EecCceeeeccc----cCe-EEEE-eCCEEEEEEcCCCceee-ee---ecccceeEEEEEEEE--CC-EEEEeeccccEE
Q psy7977 1081 EIKGACYSMCEF----NGK-LLAS-INSTVRLFEWTNEKELR-LE---CSHFNNIIALFLKVK--GD-FILVGDLMRSLT 1147 (1225)
Q Consensus 1081 ev~G~v~al~~f----~G~-LLa~-vg~~l~vy~l~~~~~L~-~e---~~~~~~~i~~~l~~~--g~-~IlvGD~~kSv~ 1147 (1225)
..++.+++++-- +|. |++| ...+|++|++...+.+. .. ....... +..+... +. +++.|..-..+.
T Consensus 207 ~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~ 285 (357)
T 3i2n_A 207 NIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKST-VWQVRHLPQNRELFLTAGGAGGLH 285 (357)
T ss_dssp ECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSC-EEEEEEETTEEEEEEEEETTSEEE
T ss_pred CCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCC-EEEEEECCCCCcEEEEEeCCCcEE
Confidence 667888888744 454 4444 45799999997654332 11 1112222 2444433 33 788888888888
Q ss_pred EEEEecCCC------------------eEEEEeccCCCceeEEEEeeeCC-cEE-EEcCCCcEEEEEeCC
Q psy7977 1148 LLQYKTMEG------------------SFEEISRDYNPNWMTSIEILDDE-LFL-GAENSYNLFICQKDS 1197 (1225)
Q Consensus 1148 ~l~y~~~~~------------------~L~~~arD~~~~wvta~~~Ld~d-t~l-~aD~~gNl~vl~~~~ 1197 (1225)
+...+.... .+..+. .+..+++++.+-.++ .++ .+..+|.+.+.....
T Consensus 286 iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~ 353 (357)
T 3i2n_A 286 LWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVT--LSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTK 353 (357)
T ss_dssp EEEEECCSCC--CCTTSCCCCCCCEEEEEEEEE--CCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC
T ss_pred EeecCCCcccccccCCCCccccccccceeeccc--cCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCC
Confidence 887764322 222222 346678899887766 455 689999999988753
No 21
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=96.91 E-value=0.41 Score=52.25 Aligned_cols=217 Identities=14% Similarity=0.141 Sum_probs=117.3
Q ss_pred cCCEEEEE-E-CCeEEEEEee--ccceeEEeeeccCceeEEEEeccCCCCCCCCccccCcEEEEEEecCCeEEEEeCC--
Q psy7977 315 NKNQVLCA-T-GCDVYYLEVH--GSEIKQLAHRALEYEVACLDISPLSNEETSSEPAKAQLAAVGLWTDISARLLSLP-- 388 (1225)
Q Consensus 315 n~~~VlVa-s-gg~Lv~feid--~~~L~ev~~~~l~~eIScLai~~~~~~~~~~~~~~s~~laVG~w~d~tv~IlsL~-- 388 (1225)
.+++++++ . ++.+..++++ .+.+..+........+.++++.+- .++++++.+.+++|.+|++.
T Consensus 48 dg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d-----------g~~l~~~~~~~~~i~~~d~~~~ 116 (343)
T 1ri6_A 48 DKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQ-----------GQFVFVGSYNAGNVSVTRLEDG 116 (343)
T ss_dssp TSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTT-----------SSEEEEEETTTTEEEEEEEETT
T ss_pred CCCEEEEeecCCCeEEEEEecCCCCceeeccccccCCCCcEEEEcCC-----------CCEEEEEecCCCeEEEEECCCC
Confidence 45667776 3 3789898887 445665555544557778887652 45677887768999999984
Q ss_pred -CcceEEeecCCCCCCcccEEEEeeCCeeEEEEEE-CCCcEEEEEEcCCCCccccce--eee--ecCccceEEEEeeCCc
Q psy7977 389 -SLEEVCKEPLGGEIIPRSILMTCFEGHCYLLVAL-GDGSMFYFSLDPASGRLTDKK--KVT--LGTQPTVLKTFRSLST 462 (1225)
Q Consensus 389 -~Le~v~~~~L~~~~~P~SIll~~l~~~~~LlVGl-~nG~L~~y~ld~~sg~Ls~~k--~~~--LG~~pV~L~~~~~~g~ 462 (1225)
..+.+.. +.....|.++.+.. ...+|+++- .+|.+..|.++. ++++.... ... .|..|.. ..+..+|
T Consensus 117 ~~~~~~~~--~~~~~~~~~~~~s~--dg~~l~~~~~~~~~v~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~pdg- 189 (343)
T 1ri6_A 117 LPVGVVDV--VEGLDGCHSANISP--DNRTLWVPALKQDRICLFTVSD-DGHLVAQDPAEVTTVEGAGPRH-MVFHPNE- 189 (343)
T ss_dssp EEEEEEEE--ECCCTTBCCCEECT--TSSEEEEEEGGGTEEEEEEECT-TSCEEEEEEEEEECSTTCCEEE-EEECTTS-
T ss_pred cccccccc--ccCCCCceEEEECC--CCCEEEEecCCCCEEEEEEecC-CCceeeecccccccCCCCCcce-EEECCCC-
Confidence 2222222 22123455665542 334666666 889999998863 24333211 111 1222222 2222223
Q ss_pred eEEEEec-C-CcEEEEEc---CCeeEEee-cccccc-----cc--cccCCCCCCCCe-EEE-Ee--CCeEEEEEEcCC--
Q psy7977 463 TNVFACS-D-RPTVIYSS---NHKLVFSN-VNLRQV-----NH--MCSLNAESYPDS-LAL-AT--DSTFTFGTIDEI-- 523 (1225)
Q Consensus 463 ~~Vfa~s-d-rP~liyss---~g~l~~~p-l~~~~v-----~~--~s~F~se~~p~g-lv~-vs--~~~LrI~~i~~~-- 523 (1225)
..+++.+ . ....+|.. .+.+.... +..-+. .. ...|+ |++ .++ .. ++.+.+..++..
T Consensus 190 ~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s----~dg~~l~v~~~~~~~i~v~d~~~~~~ 265 (343)
T 1ri6_A 190 QYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHIT----PDGRHLYACDRTASLITVFSVSEDGS 265 (343)
T ss_dssp SEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEEC----TTSSEEEEEETTTTEEEEEEECTTSC
T ss_pred CEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEEC----CCCCEEEEEecCCCEEEEEEEcCCCC
Confidence 3344443 2 22333432 23332111 110000 00 01122 332 444 33 368999988743
Q ss_pred CCeeeEEEeCCCcccEEEEecCCCEEEEEE
Q psy7977 524 QKLHIRTVPLGEAPRRIAYQESSQTFGVIT 553 (1225)
Q Consensus 524 ~~l~ir~IpLg~TprrIay~p~s~~~vV~t 553 (1225)
..-.+..++.+..|+.++++|..+.++++.
T Consensus 266 ~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~ 295 (343)
T 1ri6_A 266 VLSKEGFQPTETQPRGFNVDHSGKYLIAAG 295 (343)
T ss_dssp CEEEEEEEECSSSCCCEEECTTSSEEEEEC
T ss_pred ceEEeeeecCCCccceEEECCCCCEEEEec
Confidence 234566788887899999999999877775
No 22
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=96.90 E-value=0.24 Score=56.66 Aligned_cols=218 Identities=13% Similarity=0.132 Sum_probs=119.2
Q ss_pred EEEEEecCCEEEEE-ECCeEEEEEeeccceeEEeeeccCceeEEEEeccCCCCCCCCccccCcEEEEEEecCCeEEEEeC
Q psy7977 309 ISVVSCNKNQVLCA-TGCDVYYLEVHGSEIKQLAHRALEYEVACLDISPLSNEETSSEPAKAQLAAVGLWTDISARLLSL 387 (1225)
Q Consensus 309 Iv~As~n~~~VlVa-sgg~Lv~feid~~~L~ev~~~~l~~eIScLai~~~~~~~~~~~~~~s~~laVG~w~d~tv~IlsL 387 (1225)
+.+.+..+..++.+ .++.|.++++..++........-...|.|++..+- ..++++|.. |+.|+||++
T Consensus 96 ~~~~~~s~~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~-----------~~~l~~~~~-dg~i~iwd~ 163 (401)
T 4aez_A 96 LNLLDWSNLNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHD-----------GSFLSVGLG-NGLVDIYDV 163 (401)
T ss_dssp CBCEEECTTSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTT-----------SSEEEEEET-TSCEEEEET
T ss_pred EEEEeecCCCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCC-----------CCEEEEECC-CCeEEEEEC
Confidence 44455555555555 78899999887665544433334678999998762 468999997 999999999
Q ss_pred CCcceEEeecCCCCCCcccEEEEeeCCeeEEEEEECCCcEEEEEEcCCCCccccceeeeec-CccceEEEEeeCCceEEE
Q psy7977 388 PSLEEVCKEPLGGEIIPRSILMTCFEGHCYLLVALGDGSMFYFSLDPASGRLTDKKKVTLG-TQPTVLKTFRSLSTTNVF 466 (1225)
Q Consensus 388 ~~Le~v~~~~L~~~~~P~SIll~~l~~~~~LlVGl~nG~L~~y~ld~~sg~Ls~~k~~~LG-~~pV~L~~~~~~g~~~Vf 466 (1225)
.+.+.+....-. .....++.. . ..+|+.|..||.+..|.+......+ ..+.+ ..++.-..+...+ ..++
T Consensus 164 ~~~~~~~~~~~~-~~~v~~~~~---~-~~~l~~~~~dg~i~i~d~~~~~~~~----~~~~~~~~~v~~~~~~~~~-~~l~ 233 (401)
T 4aez_A 164 ESQTKLRTMAGH-QARVGCLSW---N-RHVLSSGSRSGAIHHHDVRIANHQI----GTLQGHSSEVCGLAWRSDG-LQLA 233 (401)
T ss_dssp TTCCEEEEECCC-SSCEEEEEE---E-TTEEEEEETTSEEEEEETTSSSCEE----EEEECCSSCEEEEEECTTS-SEEE
T ss_pred cCCeEEEEecCC-CCceEEEEE---C-CCEEEEEcCCCCEEEEecccCccee----eEEcCCCCCeeEEEEcCCC-CEEE
Confidence 875554432111 112223332 2 3589999999999999876321110 11111 1222222222122 2222
Q ss_pred Eec-CCcEEEEEcC-CeeEEeec-ccccccccccCCCCCCCCeEEEEe----CCeEEEEEEcCCCCeeeEEEeCCCcccE
Q psy7977 467 ACS-DRPTVIYSSN-HKLVFSNV-NLRQVNHMCSLNAESYPDSLALAT----DSTFTFGTIDEIQKLHIRTVPLGEAPRR 539 (1225)
Q Consensus 467 a~s-drP~liyss~-g~l~~~pl-~~~~v~~~s~F~se~~p~glv~vs----~~~LrI~~i~~~~~l~ir~IpLg~Tprr 539 (1225)
+.| +.-..+|.-. +.....-. ....+.+++ |+. ....++++. ++.+++..+... -..+++..+..+..
T Consensus 234 s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~-~~p--~~~~ll~~~~gs~d~~i~i~d~~~~--~~~~~~~~~~~v~~ 308 (401)
T 4aez_A 234 SGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVA-WCP--WQSNLLATGGGTMDKQIHFWNAATG--ARVNTVDAGSQVTS 308 (401)
T ss_dssp EEETTSCEEEEETTCSSEEEEECCCSSCCCEEE-ECT--TSTTEEEEECCTTTCEEEEEETTTC--CEEEEEECSSCEEE
T ss_pred EEeCCCeEEEccCCCCCccEEecCCcceEEEEE-ECC--CCCCEEEEecCCCCCEEEEEECCCC--CEEEEEeCCCcEEE
Confidence 222 2333344322 22211110 111121111 111 112344432 568888877643 35567778889999
Q ss_pred EEEecCCCEEEEEE
Q psy7977 540 IAYQESSQTFGVIT 553 (1225)
Q Consensus 540 Iay~p~s~~~vV~t 553 (1225)
++++|..+.+++++
T Consensus 309 ~~~s~~~~~l~~~~ 322 (401)
T 4aez_A 309 LIWSPHSKEIMSTH 322 (401)
T ss_dssp EEECSSSSEEEEEE
T ss_pred EEECCCCCeEEEEe
Confidence 99999999888765
No 23
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.90 E-value=1.6 Score=54.39 Aligned_cols=236 Identities=9% Similarity=0.075 Sum_probs=120.1
Q ss_pred eeEEEecCC-eEEEEeecCCeEEEEEeeCCCCCCCceEEEeeee-ccccceeeEEeeccccCCccEEEEEecCCCccEEE
Q psy7977 123 ECLTYLDNG-VVFVGSRLGDSQLVKLNRSPDENGTYVSVMESFT-NLAPIIDMVVVDLERQGQGQLVTCSGGFKEGSLRI 200 (1225)
Q Consensus 123 SsL~~L~~g-~LFvGS~~GDS~L~~i~~~~ddd~~~l~v~d~l~-NlgPI~D~~v~d~~~~~~~qLva~sG~g~~GsLri 200 (1225)
.+++.-.+| +|.+|+..| .+.-|.... -..+.++. .-+||..+++.. ..+.++++|. +|.+++
T Consensus 17 ~~i~~sp~~~~la~~~~~g--~v~iwd~~~------~~~~~~~~~~~~~v~~~~~s~-----~~~~l~~~~~--dg~i~v 81 (814)
T 3mkq_A 17 KGIDFHPTEPWVLTTLYSG--RVEIWNYET------QVEVRSIQVTETPVRAGKFIA-----RKNWIIVGSD--DFRIRV 81 (814)
T ss_dssp EEEEECSSSSEEEEEETTS--EEEEEETTT------TEEEEEEECCSSCEEEEEEEG-----GGTEEEEEET--TSEEEE
T ss_pred EEEEECCCCCEEEEEeCCC--EEEEEECCC------CceEEEEecCCCcEEEEEEeC-----CCCEEEEEeC--CCeEEE
Confidence 444444444 566666544 444443221 24455555 457888888754 2344444433 788888
Q ss_pred EeecceeeEEEEeeCCCcceEeEeeeCCCCCCccEEEEEcCCceE-EEEEcCc-eeeeeccCCcccccCeEEEEee-C-C
Q psy7977 201 IRNGIGIEEHACIDLPGIKGIWALSIGSPKNLDNTLVLSFVGHTR-VLTLSGA-EVEETEMGGFTSDQQTFYCGNV-D-P 276 (1225)
Q Consensus 201 lR~GI~~~~~~s~eLpgv~~iWtl~~~~~~~~d~yLVlSf~~~T~-Vl~i~ge-~veEv~~sgF~~~~~TL~ag~l-~-~ 276 (1225)
....-+ +.+..+. ..-..++.+..+. ...+|+.+..+.+. ++.+... ..... . ......+.+..+ . +
T Consensus 82 w~~~~~-~~~~~~~-~~~~~v~~~~~s~---~~~~l~~~~~dg~i~vw~~~~~~~~~~~-~---~~~~~~v~~~~~~p~~ 152 (814)
T 3mkq_A 82 FNYNTG-EKVVDFE-AHPDYIRSIAVHP---TKPYVLSGSDDLTVKLWNWENNWALEQT-F---EGHEHFVMCVAFNPKD 152 (814)
T ss_dssp EETTTC-CEEEEEE-CCSSCEEEEEECS---SSSEEEEEETTSEEEEEEGGGTSEEEEE-E---ECCSSCEEEEEEETTE
T ss_pred EECCCC-cEEEEEe-cCCCCEEEEEEeC---CCCEEEEEcCCCEEEEEECCCCceEEEE-E---cCCCCcEEEEEEEcCC
Confidence 874322 1222222 1123456665543 34567766665553 5554322 11111 0 000111111111 1 1
Q ss_pred C-eEEEEc-cCcEEEEecCCcceeeeecCCCCCcEEEEEe----cCCEEEEE-ECCeEEEEEeeccceeEEeeeccCcee
Q psy7977 277 R-TVLQVT-PSAAILISTESKARVSSWEPPNGKSISVVSC----NKNQVLCA-TGCDVYYLEVHGSEIKQLAHRALEYEV 349 (1225)
Q Consensus 277 ~-~iVQVT-~~~IRli~~~~~~~i~eW~~p~g~~Iv~As~----n~~~VlVa-sgg~Lv~feid~~~L~ev~~~~l~~eI 349 (1225)
+ .++=.+ ...|++++...++....+.......+...+. .+++++.+ .++.|.++++..++.... -..-...|
T Consensus 153 ~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~-~~~~~~~v 231 (814)
T 3mkq_A 153 PSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVAT-LEGHMSNV 231 (814)
T ss_dssp EEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEE-EECCSSCE
T ss_pred CCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEE-EcCCCCCE
Confidence 1 222222 2346677655433444443333234555555 45566666 678898888765432211 11234678
Q ss_pred EEEEeccCCCCCCCCccccCcEEEEEEecCCeEEEEeCCCcceEEe
Q psy7977 350 ACLDISPLSNEETSSEPAKAQLAAVGLWTDISARLLSLPSLEEVCK 395 (1225)
Q Consensus 350 ScLai~~~~~~~~~~~~~~s~~laVG~w~d~tv~IlsL~~Le~v~~ 395 (1225)
+|++..+. .++++.|.. |++|++|++.+.+.+..
T Consensus 232 ~~~~~~~~-----------~~~l~~~~~-dg~v~vwd~~~~~~~~~ 265 (814)
T 3mkq_A 232 SFAVFHPT-----------LPIIISGSE-DGTLKIWNSSTYKVEKT 265 (814)
T ss_dssp EEEEECSS-----------SSEEEEEET-TSCEEEEETTTCSEEEE
T ss_pred EEEEEcCC-----------CCEEEEEeC-CCeEEEEECCCCcEEEE
Confidence 89988652 457888887 99999999987555443
No 24
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=96.85 E-value=0.79 Score=50.27 Aligned_cols=277 Identities=10% Similarity=0.048 Sum_probs=143.4
Q ss_pred cCcceeEEEecCC-eEEEEeecCCeEEEEEeeCCCCCCCceEEEeeee-ccccceeeEEeeccccCCccEEEEEecCCCc
Q psy7977 119 ISIPECLTYLDNG-VVFVGSRLGDSQLVKLNRSPDENGTYVSVMESFT-NLAPIIDMVVVDLERQGQGQLVTCSGGFKEG 196 (1225)
Q Consensus 119 is~~SsL~~L~~g-~LFvGS~~GDS~L~~i~~~~ddd~~~l~v~d~l~-NlgPI~D~~v~d~~~~~~~qLva~sG~g~~G 196 (1225)
.....++..-.+| +|+.|+..|.=.++.+.. .+.+..+. .-++|.++++.. ..+.+++++ .+|
T Consensus 32 ~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~--------~~~~~~~~~h~~~v~~~~~~~-----~~~~l~s~~--~dg 96 (369)
T 3zwl_B 32 ERPLTQVKYNKEGDLLFSCSKDSSASVWYSLN--------GERLGTLDGHTGTIWSIDVDC-----FTKYCVTGS--ADY 96 (369)
T ss_dssp SSCEEEEEECTTSCEEEEEESSSCEEEEETTT--------CCEEEEECCCSSCEEEEEECT-----TSSEEEEEE--TTT
T ss_pred eceEEEEEEcCCCCEEEEEeCCCEEEEEeCCC--------chhhhhhhhcCCcEEEEEEcC-----CCCEEEEEe--CCC
Confidence 3344666665554 677777666544554332 13444554 457888887743 223444433 367
Q ss_pred cEEEEeecceeeEEEEeeCCCcceEeEeeeCCCCCCccEEEEEcCC------ceEEEEEcCc----eeeeeccCC---cc
Q psy7977 197 SLRIIRNGIGIEEHACIDLPGIKGIWALSIGSPKNLDNTLVLSFVG------HTRVLTLSGA----EVEETEMGG---FT 263 (1225)
Q Consensus 197 sLrilR~GI~~~~~~s~eLpgv~~iWtl~~~~~~~~d~yLVlSf~~------~T~Vl~i~ge----~veEv~~sg---F~ 263 (1225)
.+++..-.- -+.+..+..+ ..++.+.... ...+++.+..+ .-.++.+... .+....... +.
T Consensus 97 ~i~iwd~~~-~~~~~~~~~~--~~v~~~~~~~---~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~ 170 (369)
T 3zwl_B 97 SIKLWDVSN-GQCVATWKSP--VPVKRVEFSP---CGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKII 170 (369)
T ss_dssp EEEEEETTT-CCEEEEEECS--SCEEEEEECT---TSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEE
T ss_pred eEEEEECCC-CcEEEEeecC--CCeEEEEEcc---CCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeecc
Confidence 888875321 1222233322 2344444432 34566666554 3345554321 111110000 00
Q ss_pred ccc--CeEEEEee-CCC-eEEEEc-cCcEEEEecCC-cceeeeecCCCCCcEEEEEec--CCEEEEE-ECCeEEEEEeec
Q psy7977 264 SDQ--QTFYCGNV-DPR-TVLQVT-PSAAILISTES-KARVSSWEPPNGKSISVVSCN--KNQVLCA-TGCDVYYLEVHG 334 (1225)
Q Consensus 264 ~~~--~TL~ag~l-~~~-~iVQVT-~~~IRli~~~~-~~~i~eW~~p~g~~Iv~As~n--~~~VlVa-sgg~Lv~feid~ 334 (1225)
... ..+.+-.+ .++ .++=.. ...|++++... .+.+..+... ...|.+.+.. +.+++.+ .++.|.++++..
T Consensus 171 ~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~ 249 (369)
T 3zwl_B 171 THEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLH-EKSISDMQFSPDLTYFITSSRDTNSFLVDVST 249 (369)
T ss_dssp CCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECC-SSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred CCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecC-CCceeEEEECCCCCEEEEecCCceEEEEECCC
Confidence 000 01222222 122 222222 34577887765 3455555433 3457776664 4556555 578999988775
Q ss_pred cceeEEeeeccCceeEEEEeccCCCCCCCCccccCcEEEEEEecCC--------------eEEEEeCCCcceEEeecCCC
Q psy7977 335 SEIKQLAHRALEYEVACLDISPLSNEETSSEPAKAQLAAVGLWTDI--------------SARLLSLPSLEEVCKEPLGG 400 (1225)
Q Consensus 335 ~~L~ev~~~~l~~eIScLai~~~~~~~~~~~~~~s~~laVG~w~d~--------------tv~IlsL~~Le~v~~~~L~~ 400 (1225)
.+.. ........+.++++.+. ..+++++.. ++ .+++|++...+.+....-.
T Consensus 250 ~~~~--~~~~~~~~~~~~~~~~~-----------~~~l~~~~~-~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~- 314 (369)
T 3zwl_B 250 LQVL--KKYETDCPLNTAVITPL-----------KEFIILGGG-QEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGH- 314 (369)
T ss_dssp CCEE--EEEECSSCEEEEEECSS-----------SSEEEEEEC-CC-------------CEEEEEETTTCCEEEEEECC-
T ss_pred Ccee--eeecCCCCceeEEecCC-----------CceEEEeec-CCCceEEEEecCCCcceeEEEecCCCcchhheecc-
Confidence 4332 22335677888888652 567888887 65 7888888765544332111
Q ss_pred CCCcccEEEEeeCCeeEEEEEECCCcEEEEEEcC
Q psy7977 401 EIIPRSILMTCFEGHCYLLVALGDGSMFYFSLDP 434 (1225)
Q Consensus 401 ~~~P~SIll~~l~~~~~LlVGl~nG~L~~y~ld~ 434 (1225)
.....++.+. ....+|+.|..||.+..|.++.
T Consensus 315 ~~~v~~~~~s--~~~~~l~s~~~dg~v~iw~~~~ 346 (369)
T 3zwl_B 315 FGPLNTVAIS--PQGTSYASGGEDGFIRLHHFEK 346 (369)
T ss_dssp SSCEEEEEEC--TTSSEEEEEETTSEEEEEEECH
T ss_pred cCcEEEEEEC--CCCCEEEEEcCCCeEEEEECcc
Confidence 1122233332 2456899999999999999864
No 25
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=96.83 E-value=0.32 Score=54.43 Aligned_cols=115 Identities=12% Similarity=0.144 Sum_probs=73.1
Q ss_pred CcEEEEEec---CCEEEEE-ECCeEEEEEeecccee-EEe-----e------eccCceeEEEEeccCCCCCCCCccccCc
Q psy7977 307 KSISVVSCN---KNQVLCA-TGCDVYYLEVHGSEIK-QLA-----H------RALEYEVACLDISPLSNEETSSEPAKAQ 370 (1225)
Q Consensus 307 ~~Iv~As~n---~~~VlVa-sgg~Lv~feid~~~L~-ev~-----~------~~l~~eIScLai~~~~~~~~~~~~~~s~ 370 (1225)
..|.+.+.+ +.+++.+ .++.|.+++++..... ... . ......|.|++..+. ...
T Consensus 44 ~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----------~~~ 113 (408)
T 4a11_B 44 GGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPH----------DTG 113 (408)
T ss_dssp SCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTT----------CTT
T ss_pred CcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccC----------CCc
Confidence 467777775 3455555 5788999988754211 111 0 014567889988652 245
Q ss_pred EEEEEEecCCeEEEEeCCCcceEEeecCCCCCCcccEEEEeeC-CeeEEEEEECCCcEEEEEEcC
Q psy7977 371 LAAVGLWTDISARLLSLPSLEEVCKEPLGGEIIPRSILMTCFE-GHCYLLVALGDGSMFYFSLDP 434 (1225)
Q Consensus 371 ~laVG~w~d~tv~IlsL~~Le~v~~~~L~~~~~P~SIll~~l~-~~~~LlVGl~nG~L~~y~ld~ 434 (1225)
+++.|.. |++|++|++.+.+.+...... ....++.+...+ ...++++|..+|.+..|.+..
T Consensus 114 ~l~s~~~-d~~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~ 175 (408)
T 4a11_B 114 MFTSSSF-DKTLKVWDTNTLQTADVFNFE--ETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKS 175 (408)
T ss_dssp CEEEEET-TSEEEEEETTTTEEEEEEECS--SCEEEEEECSSCSSCCEEEEEESSSSEEEEESSS
T ss_pred EEEEEeC-CCeEEEeeCCCCccceeccCC--CceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCC
Confidence 6778876 999999999876655443332 222334433332 345899999999999998753
No 26
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=96.82 E-value=0.94 Score=50.75 Aligned_cols=294 Identities=15% Similarity=0.054 Sum_probs=147.1
Q ss_pred eeEEEecCCeEEEEeecCCeEEEEEeeCCCCCCCceEEEeee-eccccceeeEEeeccccCCc---cEEEEEecCCCccE
Q psy7977 123 ECLTYLDNGVVFVGSRLGDSQLVKLNRSPDENGTYVSVMESF-TNLAPIIDMVVVDLERQGQG---QLVTCSGGFKEGSL 198 (1225)
Q Consensus 123 SsL~~L~~g~LFvGS~~GDS~L~~i~~~~ddd~~~l~v~d~l-~NlgPI~D~~v~d~~~~~~~---qLva~sG~g~~GsL 198 (1225)
.++..-. ++|+.||..|.=.++.+.... ....+..+..+ ..-+||..+.+.... .... +++++++ .+|.+
T Consensus 20 ~~~~~~~-~~l~s~~~dg~i~iw~~~~~~--~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~~g~~~~~l~s~~--~dg~i 93 (397)
T 1sq9_A 20 FSVSACN-SFTVSCSGDGYLKVWDNKLLD--NENPKDKSYSHFVHKSGLHHVDVLQAI-ERDAFELCLVATTS--FSGDL 93 (397)
T ss_dssp EEEEECS-SEEEEEETTSEEEEEESBCCT--TCCGGGGEEEEECCTTCEEEEEEEEEE-ETTTEEEEEEEEEE--TTSCE
T ss_pred EEEEecC-CeEEEEcCCCEEEEEECCCcc--cccCCCcceEEecCCCcEEEEEEeccc-ccCCccccEEEEEc--CCCCE
Confidence 5555533 788888876655555544321 11111122233 345788888876420 0112 4444444 36788
Q ss_pred EEEeecceee----EEEEee-CCC---cceEeEeeeCCCC-CCccE-EEEEcCC-ceEEEEEcC-------ceee-----
Q psy7977 199 RIIRNGIGIE----EHACID-LPG---IKGIWALSIGSPK-NLDNT-LVLSFVG-HTRVLTLSG-------AEVE----- 255 (1225)
Q Consensus 199 rilR~GI~~~----~~~s~e-Lpg---v~~iWtl~~~~~~-~~d~y-LVlSf~~-~T~Vl~i~g-------e~ve----- 255 (1225)
++..-.-+-. ....+. .++ -..++.+...... ....+ |+.+..+ .-.++.+.. +.+.
T Consensus 94 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 173 (397)
T 1sq9_A 94 LFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTL 173 (397)
T ss_dssp EEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEE
T ss_pred EEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcc
Confidence 8875332111 022222 111 1456666654110 23455 5554444 444666533 1111
Q ss_pred eecc--CCcccccCeEEEEee-CCCeEEEEc-cCcEEEEecCCcceeeeecCC--C---CCcEEEEEec--CCEEEEE-E
Q psy7977 256 ETEM--GGFTSDQQTFYCGNV-DPRTVLQVT-PSAAILISTESKARVSSWEPP--N---GKSISVVSCN--KNQVLCA-T 323 (1225)
Q Consensus 256 Ev~~--sgF~~~~~TL~ag~l-~~~~iVQVT-~~~IRli~~~~~~~i~eW~~p--~---g~~Iv~As~n--~~~VlVa-s 323 (1225)
.+.. .........+.+-.+ .++.++=.. ...|++++...++.+..+... . ...|.+.+.+ +.+++.+ .
T Consensus 174 ~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~ 253 (397)
T 1sq9_A 174 ELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHD 253 (397)
T ss_dssp EEEEEECCSSSSCCCCCEEEECTTSEEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEE
T ss_pred eeeeeeccccCCCCCceEEEECCCceEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEec
Confidence 1100 000000111111122 122222112 234777776655666666541 1 3467777774 5566666 5
Q ss_pred C---CeEEEEEeecccee-EEeee-----------ccCceeEEEEeccCCCCCCCCccccCcEEEEEEecCCeEEEEeCC
Q psy7977 324 G---CDVYYLEVHGSEIK-QLAHR-----------ALEYEVACLDISPLSNEETSSEPAKAQLAAVGLWTDISARLLSLP 388 (1225)
Q Consensus 324 g---g~Lv~feid~~~L~-ev~~~-----------~l~~eIScLai~~~~~~~~~~~~~~s~~laVG~w~d~tv~IlsL~ 388 (1225)
+ +.|.++++...+.. ..... .....|.|+++.+. ..+++.|.. |++|+||++.
T Consensus 254 d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----------~~~l~~~~~-dg~i~iwd~~ 321 (397)
T 1sq9_A 254 SNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDS-----------GETLCSAGW-DGKLRFWDVK 321 (397)
T ss_dssp ETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSS-----------SSEEEEEET-TSEEEEEETT
T ss_pred CCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCC-----------CCEEEEEeC-CCeEEEEEcC
Confidence 6 78999988755322 22110 04567889988652 467888887 9999999998
Q ss_pred CcceEEeecC-----CC---------------CCCcccEEEEeeCC--------eeEEEEEECCCcEEEEEEcC
Q psy7977 389 SLEEVCKEPL-----GG---------------EIIPRSILMTCFEG--------HCYLLVALGDGSMFYFSLDP 434 (1225)
Q Consensus 389 ~Le~v~~~~L-----~~---------------~~~P~SIll~~l~~--------~~~LlVGl~nG~L~~y~ld~ 434 (1225)
+.+.+..... .. .....++.+..-+. ..+|+.|..||.+..|.++.
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~ 395 (397)
T 1sq9_A 322 TKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAG 395 (397)
T ss_dssp TTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC
T ss_pred CCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCC
Confidence 7665544321 00 11223344432110 16899999999999998763
No 27
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=96.79 E-value=1.4 Score=52.32 Aligned_cols=264 Identities=12% Similarity=0.127 Sum_probs=129.2
Q ss_pred cceeEEEecCCe-EEEEeecCCeEEEEEeeCCCCCCCceEEEeeeec-cccceeeEEeeccccCCccEEEEEecCCCccE
Q psy7977 121 IPECLTYLDNGV-VFVGSRLGDSQLVKLNRSPDENGTYVSVMESFTN-LAPIIDMVVVDLERQGQGQLVTCSGGFKEGSL 198 (1225)
Q Consensus 121 ~~SsL~~L~~g~-LFvGS~~GDS~L~~i~~~~ddd~~~l~v~d~l~N-lgPI~D~~v~d~~~~~~~qLva~sG~g~~GsL 198 (1225)
.-+|+++-.+|. |..|| .|+.+.-|...+ +.+.++.. -++|..+++.. ..++++++| .+|.+
T Consensus 18 ~V~~~a~spdg~~las~~--~d~~v~iWd~~~-------~~~~~l~gh~~~V~~l~fsp-----dg~~las~~--~d~~i 81 (577)
T 2ymu_A 18 SVRGVAFSPDGQTIASAS--DDKTVKLWNRNG-------QLLQTLTGHSSSVWGVAFSP-----DGQTIASAS--DDKTV 81 (577)
T ss_dssp CEEEEEECTTSSCEEEEE--TTSEEEEECTTS-------CEEEEEECCSSCEEEEEECT-----TSSEEEEEE--TTSCE
T ss_pred cEEEEEECCCCCEEEEEe--CCCEEEEEECCC-------CEEEEEeCCCCCEEEEEECC-----CCCEEEEEe--CCCEE
Confidence 346666666665 44454 455666665322 34556654 47888887743 234444443 57889
Q ss_pred EEEeecceeeEEEEeeCCCcceEeEeeeCCCCCCccEEEEEcCCceEEEEE-cCceeeeeccCCcccccCeEEEEee-CC
Q psy7977 199 RIIRNGIGIEEHACIDLPGIKGIWALSIGSPKNLDNTLVLSFVGHTRVLTL-SGAEVEETEMGGFTSDQQTFYCGNV-DP 276 (1225)
Q Consensus 199 rilR~GI~~~~~~s~eLpgv~~iWtl~~~~~~~~d~yLVlSf~~~T~Vl~i-~ge~veEv~~sgF~~~~~TL~ag~l-~~ 276 (1225)
++... .-+.+..+.- .-..++.+.... ...+|+....+.+..+-- ......... +. ...+..... .+
T Consensus 82 ~vWd~--~~~~~~~~~~-~~~~v~~~~~s~---d~~~l~~~~~d~~~~~~~~~~~~~~~~~--~~---~~~v~~~~~~~~ 150 (577)
T 2ymu_A 82 KLWNR--NGQLLQTLTG-HSSSVRGVAFSP---DGQTIASASDDKTVKLWNRNGQLLQTLT--GH---SSSVWGVAFSPD 150 (577)
T ss_dssp EEEET--TSCEEEEECC-CSSCEEEEEECT---TSSEEEEEETTSCEEEEETTCCEEEEEC--CC---SSCEEEEEECTT
T ss_pred EEEEC--CCCEEEEEEC-CCCCEEEEEECC---CCCEEEEEcCCCceeecccccceeeecc--CC---CCceeeeeeecC
Confidence 99863 3333444321 123556665543 346676665555543332 111111111 11 111111111 12
Q ss_pred C-eEEEEc-cCcEEEEecCCcceeeeecCCCCCcEEEEEec--CCEEEEE-ECCeEEEEEeeccceeEEeeeccCceeEE
Q psy7977 277 R-TVLQVT-PSAAILISTESKARVSSWEPPNGKSISVVSCN--KNQVLCA-TGCDVYYLEVHGSEIKQLAHRALEYEVAC 351 (1225)
Q Consensus 277 ~-~iVQVT-~~~IRli~~~~~~~i~eW~~p~g~~Iv~As~n--~~~VlVa-sgg~Lv~feid~~~L~ev~~~~l~~eISc 351 (1225)
+ .+.-.. ...+++...+. ........ ....|...... +.+++.+ .++.+.+++.+...+... ..-...|.|
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~v~~w~~~~~~~~~~--~~~~~~v~~ 226 (577)
T 2ymu_A 151 GQTIASASDDKTVKLWNRNG-QLLQTLTG-HSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTL--TGHSSSVRG 226 (577)
T ss_dssp SSCEEEEETTSEEEEECTTS-CEEEEEEC-CSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEE--ECCSSCEEE
T ss_pred Cccceecccccceeccccce-eeeeeccC-CCcceeeeeecCCCCEEEEEcCCCEEEEEeCCCcEEEEE--ecCCCCEEE
Confidence 2 222222 22233333222 22222222 22345555544 3455555 567777765432112221 223567889
Q ss_pred EEeccCCCCCCCCccccCcEEEEEEecCCeEEEEeCCCcceEEeecCCC-CCCcccEEEEeeCCeeEEEEEECCCcEEEE
Q psy7977 352 LDISPLSNEETSSEPAKAQLAAVGLWTDISARLLSLPSLEEVCKEPLGG-EIIPRSILMTCFEGHCYLLVALGDGSMFYF 430 (1225)
Q Consensus 352 Lai~~~~~~~~~~~~~~s~~laVG~w~d~tv~IlsL~~Le~v~~~~L~~-~~~P~SIll~~l~~~~~LlVGl~nG~L~~y 430 (1225)
+++.+- ..+++.|.. |+++++++... +.+.. +.. .....++.+. +...+|..+..||.+..+
T Consensus 227 ~~~s~d-----------g~~l~~~~~-d~~i~~w~~~~-~~~~~--~~~~~~~v~~v~~~--~d~~~l~~~~~d~~i~~w 289 (577)
T 2ymu_A 227 VAFSPD-----------GQTIASASD-DKTVKLWNRNG-QLLQT--LTGHSSSVNGVAFR--PDGQTIASASDDKTVKLW 289 (577)
T ss_dssp EEECTT-----------SSCEEEEET-TSCEEEECTTS-CEEEE--ECCCSSCEEEEEEC--TTSSEEEEEETTSCEEEE
T ss_pred EEECCC-----------CCEEEEEeC-CCEEEEEeCCC-CEEEE--EecCCCCEEEEEEc--CCCCEEEEEeCCCEEEEE
Confidence 988652 346778876 99999998753 22211 211 1112233322 345688999999999888
Q ss_pred EE
Q psy7977 431 SL 432 (1225)
Q Consensus 431 ~l 432 (1225)
..
T Consensus 290 ~~ 291 (577)
T 2ymu_A 290 NR 291 (577)
T ss_dssp ET
T ss_pred eC
Confidence 64
No 28
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=96.79 E-value=0.46 Score=52.64 Aligned_cols=114 Identities=15% Similarity=0.070 Sum_probs=73.9
Q ss_pred cEEEEEec--CCEEEEE-ECCeEEEEEeeccceeEEeee-ccCceeEEEEeccCCCCCCCCccccCcEEEEEEecCCeEE
Q psy7977 308 SISVVSCN--KNQVLCA-TGCDVYYLEVHGSEIKQLAHR-ALEYEVACLDISPLSNEETSSEPAKAQLAAVGLWTDISAR 383 (1225)
Q Consensus 308 ~Iv~As~n--~~~VlVa-sgg~Lv~feid~~~L~ev~~~-~l~~eIScLai~~~~~~~~~~~~~~s~~laVG~w~d~tv~ 383 (1225)
.|.+.+.+ +++++.+ .++.|.+++++.+++..+... .-...|.|+++.+. .++++.|.. |++|+
T Consensus 10 ~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-----------~~~l~~~~~-dg~i~ 77 (372)
T 1k8k_C 10 PISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPD-----------SNRIVTCGT-DRNAY 77 (372)
T ss_dssp CCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETT-----------TTEEEEEET-TSCEE
T ss_pred CeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCC-----------CCEEEEEcC-CCeEE
Confidence 45555554 4466666 678899998876654343332 34578999998762 467888886 99999
Q ss_pred EEeCCCcceEEeecCCC-CCCcccEEEEeeCCeeEEEEEECCCcEEEEEEcCC
Q psy7977 384 LLSLPSLEEVCKEPLGG-EIIPRSILMTCFEGHCYLLVALGDGSMFYFSLDPA 435 (1225)
Q Consensus 384 IlsL~~Le~v~~~~L~~-~~~P~SIll~~l~~~~~LlVGl~nG~L~~y~ld~~ 435 (1225)
+|++.+.+......+.. .....++.+. ....+|++|..+|.+..|.++..
T Consensus 78 vwd~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~d~~v~i~d~~~~ 128 (372)
T 1k8k_C 78 VWTLKGRTWKPTLVILRINRAARCVRWA--PNEKKFAVGSGSRVISICYFEQE 128 (372)
T ss_dssp EEEEETTEEEEEEECCCCSSCEEEEEEC--TTSSEEEEEETTSSEEEEEEETT
T ss_pred EEECCCCeeeeeEEeecCCCceeEEEEC--CCCCEEEEEeCCCEEEEEEecCC
Confidence 99997654333222211 1122233332 24578999999999999988753
No 29
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=96.77 E-value=1 Score=51.89 Aligned_cols=233 Identities=11% Similarity=0.113 Sum_probs=127.9
Q ss_pred CcEEEEecCCcceeeeecCCCCCcEEEEEecCCEEEEE-ECCeEEEEEeeccceeEEeeeccCceeEEEEeccCCCCCCC
Q psy7977 285 SAAILISTESKARVSSWEPPNGKSISVVSCNKNQVLCA-TGCDVYYLEVHGSEIKQLAHRALEYEVACLDISPLSNEETS 363 (1225)
Q Consensus 285 ~~IRli~~~~~~~i~eW~~p~g~~Iv~As~n~~~VlVa-sgg~Lv~feid~~~L~ev~~~~l~~eIScLai~~~~~~~~~ 363 (1225)
..|++.+.+.++.+..+.. ....|.+.+.++++++.+ .++.|.++++..++.... ...-...|.|++..
T Consensus 179 g~i~vwd~~~~~~~~~~~~-h~~~v~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~-~~~~~~~v~~~~~~-------- 248 (445)
T 2ovr_B 179 RTLKVWNAETGECIHTLYG-HTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHV-LMGHVAAVRCVQYD-------- 248 (445)
T ss_dssp SCEEEEETTTTEEEEEECC-CSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEE-EECCSSCEEEEEEC--------
T ss_pred CeEEEEECCcCcEEEEECC-CCCcEEEEEecCCEEEEEeCCCEEEEEECCCCcEEEE-EcCCcccEEEEEEC--------
Confidence 3567777665555555543 234688888888887777 689999998876543221 11234678888761
Q ss_pred CccccCcEEEEEEecCCeEEEEeCCCcceEEeecCCCCCCcccEEEEeeCCeeEEEEEECCCcEEEEEEcCCCCccccce
Q psy7977 364 SEPAKAQLAAVGLWTDISARLLSLPSLEEVCKEPLGGEIIPRSILMTCFEGHCYLLVALGDGSMFYFSLDPASGRLTDKK 443 (1225)
Q Consensus 364 ~~~~~s~~laVG~w~d~tv~IlsL~~Le~v~~~~L~~~~~P~SIll~~l~~~~~LlVGl~nG~L~~y~ld~~sg~Ls~~k 443 (1225)
..++++|.. |++|++|++.+.+.+....-. .....++. + ...+|+.|..||.+..|.+.. ++..
T Consensus 249 -----~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~---~-~~~~l~~~~~d~~i~i~d~~~--~~~~--- 312 (445)
T 2ovr_B 249 -----GRRVVSGAY-DFMVKVWDPETETCLHTLQGH-TNRVYSLQ---F-DGIHVVSGSLDTSIRVWDVET--GNCI--- 312 (445)
T ss_dssp -----SSCEEEEET-TSCEEEEEGGGTEEEEEECCC-SSCEEEEE---E-CSSEEEEEETTSCEEEEETTT--CCEE---
T ss_pred -----CCEEEEEcC-CCEEEEEECCCCcEeEEecCC-CCceEEEE---E-CCCEEEEEeCCCeEEEEECCC--CCEE---
Confidence 346888887 999999999765544432211 11112232 3 456899999999999988753 2211
Q ss_pred eeeecC-ccceEEEEeeCCceEEEEec-CCcEEEEEc-CCeeE-Eeec---ccccccccccCCCCCCCCeEEEEe-CCeE
Q psy7977 444 KVTLGT-QPTVLKTFRSLSTTNVFACS-DRPTVIYSS-NHKLV-FSNV---NLRQVNHMCSLNAESYPDSLALAT-DSTF 515 (1225)
Q Consensus 444 ~~~LG~-~pV~L~~~~~~g~~~Vfa~s-drP~liyss-~g~l~-~~pl---~~~~v~~~s~F~se~~p~glv~vs-~~~L 515 (1225)
..+-+. .++. .+...+. .+++.+ +.-..+|.- .++.. .... ....+.+++ |+ ++.++..+ ++.+
T Consensus 313 ~~~~~~~~~v~--~~~~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~-~~----~~~l~s~~~dg~v 384 (445)
T 2ovr_B 313 HTLTGHQSLTS--GMELKDN-ILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQ-FN----KNFVITSSDDGTV 384 (445)
T ss_dssp EEECCCCSCEE--EEEEETT-EEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEE-EC----SSEEEEEETTSEE
T ss_pred EEEcCCcccEE--EEEEeCC-EEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEE-EC----CCEEEEEeCCCeE
Confidence 111111 1121 1222222 222222 233333432 22211 1110 111222222 21 34455544 5688
Q ss_pred EEEEEcCCCCeeeEEE------eCCCcccEEEEecCCCEEEEEE
Q psy7977 516 TFGTIDEIQKLHIRTV------PLGEAPRRIAYQESSQTFGVIT 553 (1225)
Q Consensus 516 rI~~i~~~~~l~ir~I------pLg~TprrIay~p~s~~~vV~t 553 (1225)
++..+.... .++++ +.+..+..++++|....++++.
T Consensus 385 ~iwd~~~~~--~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~ 426 (445)
T 2ovr_B 385 KLWDLKTGE--FIRNLVTLESGGSGGVVWRIRASNTKLVCAVGS 426 (445)
T ss_dssp EEEETTTCC--EEEEEEECTTGGGTCEEEEEEECSSEEEEEEEC
T ss_pred EEEECCCCc--eeeeeeccccCCCCceEEEEEecCCEEEEEEcc
Confidence 888876533 33444 3456789999999877777775
No 30
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=96.73 E-value=0.97 Score=49.59 Aligned_cols=120 Identities=15% Similarity=0.059 Sum_probs=76.1
Q ss_pred CCCcEEEEEec------CCEEEEE-ECCeEEEEEeecc-ceeEEeee---ccCceeEEEEeccCCCCCCCCccccCcEEE
Q psy7977 305 NGKSISVVSCN------KNQVLCA-TGCDVYYLEVHGS-EIKQLAHR---ALEYEVACLDISPLSNEETSSEPAKAQLAA 373 (1225)
Q Consensus 305 ~g~~Iv~As~n------~~~VlVa-sgg~Lv~feid~~-~L~ev~~~---~l~~eIScLai~~~~~~~~~~~~~~s~~la 373 (1225)
....|.+.+.+ +..++.+ .++.+.++++..+ .+..+... .....|.|++..+... ....+++
T Consensus 17 h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-------~~~~~l~ 89 (366)
T 3k26_A 17 HNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSN-------TSHPLLA 89 (366)
T ss_dssp TCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTT-------TCCEEEE
T ss_pred CCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCC-------CCCCEEE
Confidence 34568887777 3344444 6778988888755 33333322 2457799999977422 1246888
Q ss_pred EEEecCCeEEEEeCCCcceEEeecCCCCCCcccEEEEeeCCeeEEEEEECCCcEEEEEEcC
Q psy7977 374 VGLWTDISARLLSLPSLEEVCKEPLGGEIIPRSILMTCFEGHCYLLVALGDGSMFYFSLDP 434 (1225)
Q Consensus 374 VG~w~d~tv~IlsL~~Le~v~~~~L~~~~~P~SIll~~l~~~~~LlVGl~nG~L~~y~ld~ 434 (1225)
+|.. |++|++|++.+.+.+..-.-. .....++.+... +..+|+.|..||.+..|.+..
T Consensus 90 ~~~~-dg~i~v~d~~~~~~~~~~~~~-~~~i~~~~~~~~-~~~~l~s~~~dg~i~iwd~~~ 147 (366)
T 3k26_A 90 VAGS-RGIIRIINPITMQCIKHYVGH-GNAINELKFHPR-DPNLLLSVSKDHALRLWNIQT 147 (366)
T ss_dssp EEET-TCEEEEECTTTCCEEEEEESC-CSCEEEEEECSS-CTTEEEEEETTSCEEEEETTT
T ss_pred EecC-CCEEEEEEchhceEeeeecCC-CCcEEEEEECCC-CCCEEEEEeCCCeEEEEEeec
Confidence 8887 999999999876654432111 112233333211 456899999999999998753
No 31
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=96.70 E-value=1.2 Score=50.39 Aligned_cols=238 Identities=13% Similarity=0.042 Sum_probs=122.7
Q ss_pred eeccccceeeEEeeccccCCccEEEEEecCCCccEEEEee--cceeeEEEEeeCCCcceEeEeeeCCCCCCccEEEEEcC
Q psy7977 164 FTNLAPIIDMVVVDLERQGQGQLVTCSGGFKEGSLRIIRN--GIGIEEHACIDLPGIKGIWALSIGSPKNLDNTLVLSFV 241 (1225)
Q Consensus 164 l~NlgPI~D~~v~d~~~~~~~qLva~sG~g~~GsLrilR~--GI~~~~~~s~eLpgv~~iWtl~~~~~~~~d~yLVlSf~ 241 (1225)
+..-++|.+++... ..+|++++ .+|++++..- |=............-..++++.... ..++|+....
T Consensus 79 ~~~~~~v~~~~~s~-----d~~l~~~s---~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~sp---dg~~l~sgs~ 147 (344)
T 4gqb_B 79 VQTEAGVADLTWVG-----ERGILVAS---DSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLS---SGTQAVSGSK 147 (344)
T ss_dssp EEESSCEEEEEEET-----TTEEEEEE---TTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECT---TSSEEEEEET
T ss_pred eccCCCEEEEEEeC-----CCeEEEEE---CCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECC---CCCEEEEEeC
Confidence 33446788888753 24566554 4688988753 2212221111112234566666543 3456766555
Q ss_pred CceE-EEEEcCc-eeeeeccCCcccccCeEEEEee-CC--CeEEEEc-cCcEEEEecCCcceeeeecCC-CCCcEEEEEe
Q psy7977 242 GHTR-VLTLSGA-EVEETEMGGFTSDQQTFYCGNV-DP--RTVLQVT-PSAAILISTESKARVSSWEPP-NGKSISVVSC 314 (1225)
Q Consensus 242 ~~T~-Vl~i~ge-~veEv~~sgF~~~~~TL~ag~l-~~--~~iVQVT-~~~IRli~~~~~~~i~eW~~p-~g~~Iv~As~ 314 (1225)
+.|. ++.+... .+.... + ....+.+-.+ .+ ..++=.. .+.||+.+...++........ .+..+.+.+.
T Consensus 148 d~~i~iwd~~~~~~~~~~~--~---h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 222 (344)
T 4gqb_B 148 DICIKVWDLAQQVVLSSYR--A---HAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAW 222 (344)
T ss_dssp TSCEEEEETTTTEEEEEEC--C---CSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEE
T ss_pred CCeEEEEECCCCcEEEEEc--C---cCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeee
Confidence 5553 5544221 122111 1 1112222222 11 1222222 345788887665555555432 2334666665
Q ss_pred c--CCEEEE-E-ECCeEEEEEeeccce-eEEeeeccCceeEEEEeccCCCCCCCCccccCcEEEEEEecCCeEEEEeCCC
Q psy7977 315 N--KNQVLC-A-TGCDVYYLEVHGSEI-KQLAHRALEYEVACLDISPLSNEETSSEPAKAQLAAVGLWTDISARLLSLPS 389 (1225)
Q Consensus 315 n--~~~VlV-a-sgg~Lv~feid~~~L-~ev~~~~l~~eIScLai~~~~~~~~~~~~~~s~~laVG~w~d~tv~IlsL~~ 389 (1225)
. +.++++ + .++.|.++++..++. ... ..-...|.|+++.+. ...+++.|.. |++|+||++..
T Consensus 223 ~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~--~~h~~~v~~v~fsp~----------g~~~lasgs~-D~~i~vwd~~~ 289 (344)
T 4gqb_B 223 HPQQSEVFVFGDENGTVSLVDTKSTSCVLSS--AVHSQCVTGLVFSPH----------SVPFLASLSE-DCSLAVLDSSL 289 (344)
T ss_dssp CSSCTTEEEEEETTSEEEEEESCC--CCEEE--ECCSSCEEEEEECSS----------SSCCEEEEET-TSCEEEECTTC
T ss_pred cCCCCcceEEeccCCcEEEEECCCCcEEEEE--cCCCCCEEEEEEccC----------CCeEEEEEeC-CCeEEEEECCC
Confidence 4 444555 4 578898888765432 222 123567899998762 2457777886 99999999876
Q ss_pred cceEEeecCCCCCCcccEEEEeeCCeeEEE-EEECCCcEEEEEEcC
Q psy7977 390 LEEVCKEPLGGEIIPRSILMTCFEGHCYLL-VALGDGSMFYFSLDP 434 (1225)
Q Consensus 390 Le~v~~~~L~~~~~P~SIll~~l~~~~~Ll-VGl~nG~L~~y~ld~ 434 (1225)
-+.+....- .....++.+.. ...+|+ -|-.||.+..+.++.
T Consensus 290 ~~~~~~~~H--~~~V~~v~~sp--~~~~llas~s~D~~v~~w~v~~ 331 (344)
T 4gqb_B 290 SELFRSQAH--RDFVRDATWSP--LNHSLLTTVGWDHQVVHHVVPT 331 (344)
T ss_dssp CEEEEECCC--SSCEEEEEECS--SSTTEEEEEETTSCEEEEECCC
T ss_pred CcEEEEcCC--CCCEEEEEEeC--CCCeEEEEEcCCCeEEEEECCC
Confidence 443322211 11223444332 223344 567899999998864
No 32
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=96.68 E-value=1 Score=49.13 Aligned_cols=241 Identities=11% Similarity=0.126 Sum_probs=119.0
Q ss_pred EEEEecCCcceeeeecCCCCCcEEEEEec--CCEEEEE-ECCeEEEEEeeccceeEEeeeccCceeEEEEeccCCCCCCC
Q psy7977 287 AILISTESKARVSSWEPPNGKSISVVSCN--KNQVLCA-TGCDVYYLEVHGSEIKQLAHRALEYEVACLDISPLSNEETS 363 (1225)
Q Consensus 287 IRli~~~~~~~i~eW~~p~g~~Iv~As~n--~~~VlVa-sgg~Lv~feid~~~L~ev~~~~l~~eIScLai~~~~~~~~~ 363 (1225)
|++.+...++....+.. ....|...+.. +++++.+ .++.+.++++..++.... -..-...|.|++..+.
T Consensus 47 i~iw~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~-~~~~~~~v~~~~~~~~------ 118 (312)
T 4ery_A 47 IKIWGAYDGKFEKTISG-HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKT-LKGHSNYVFCCNFNPQ------ 118 (312)
T ss_dssp EEEEETTTCCEEEEECC-CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEE-EECCSSCEEEEEECSS------
T ss_pred EEEEeCCCcccchhhcc-CCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEE-EcCCCCCEEEEEEcCC------
Confidence 44444433333333322 22346655554 3445545 578888888775533221 1123467889888652
Q ss_pred CccccCcEEEEEEecCCeEEEEeCCCcceEEeecCCCCCCcccEEEEeeCCeeEEEEEECCCcEEEEEEcCCCCccccce
Q psy7977 364 SEPAKAQLAAVGLWTDISARLLSLPSLEEVCKEPLGGEIIPRSILMTCFEGHCYLLVALGDGSMFYFSLDPASGRLTDKK 443 (1225)
Q Consensus 364 ~~~~~s~~laVG~w~d~tv~IlsL~~Le~v~~~~L~~~~~P~SIll~~l~~~~~LlVGl~nG~L~~y~ld~~sg~Ls~~k 443 (1225)
.++++.|.. |++|++|++.+.+.+....-. .....++.+. ....+|+.|..||.+..|.+.. ++.. +
T Consensus 119 -----~~~l~s~~~-d~~i~iwd~~~~~~~~~~~~~-~~~v~~~~~~--~~~~~l~~~~~d~~i~~wd~~~--~~~~--~ 185 (312)
T 4ery_A 119 -----SNLIVSGSF-DESVRIWDVKTGKCLKTLPAH-SDPVSAVHFN--RDGSLIVSSSYDGLCRIWDTAS--GQCL--K 185 (312)
T ss_dssp -----SSEEEEEET-TSCEEEEETTTCCEEEEECCC-SSCEEEEEEC--TTSSEEEEEETTSCEEEEETTT--CCEE--E
T ss_pred -----CCEEEEEeC-CCcEEEEECCCCEEEEEecCC-CCcEEEEEEc--CCCCEEEEEeCCCcEEEEECCC--Ccee--e
Confidence 467888887 999999999865544332111 1111223222 2456899999999999987653 2210 1
Q ss_pred eee-ecCccceEEEEeeCCceEEEEec-CCcEEEEEc-CCeeE--EeecccccccccccCCCCCCCCeEEEE--eCCeEE
Q psy7977 444 KVT-LGTQPTVLKTFRSLSTTNVFACS-DRPTVIYSS-NHKLV--FSNVNLRQVNHMCSLNAESYPDSLALA--TDSTFT 516 (1225)
Q Consensus 444 ~~~-LG~~pV~L~~~~~~g~~~Vfa~s-drP~liyss-~g~l~--~~pl~~~~v~~~s~F~se~~p~glv~v--s~~~Lr 516 (1225)
... -...++....+..++. .+++.+ +.-..+|.- .++.. +..-........+.|... ...++++ .++.++
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~sg~~dg~i~ 262 (312)
T 4ery_A 186 TLIDDDNPPVSFVKFSPNGK-YILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVT--GGKWIVSGSEDNLVY 262 (312)
T ss_dssp EECCSSCCCEEEEEECTTSS-EEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECS--SSCEEEECCTTSCEE
T ss_pred EEeccCCCceEEEEECCCCC-EEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeC--CCcEEEEECCCCEEE
Confidence 111 1123344334433332 233322 333333432 22211 111000000001111111 1223333 246788
Q ss_pred EEEEcCCCCeeeEEEeC-CCcccEEEEecCCCEEEEEE
Q psy7977 517 FGTIDEIQKLHIRTVPL-GEAPRRIAYQESSQTFGVIT 553 (1225)
Q Consensus 517 I~~i~~~~~l~ir~IpL-g~TprrIay~p~s~~~vV~t 553 (1225)
+-.+.... .++++.- ...+..+++||..+.++.+.
T Consensus 263 vwd~~~~~--~~~~~~~h~~~v~~~~~~p~~~~l~s~~ 298 (312)
T 4ery_A 263 IWNLQTKE--IVQKLQGHTDVVISTACHPTENIIASAA 298 (312)
T ss_dssp EEETTTCC--EEEEECCCSSCEEEEEECSSSSEEEEEE
T ss_pred EEECCCch--hhhhhhccCCcEEEEeecCcCCceEEEE
Confidence 88765432 3344443 34678899999999887775
No 33
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=96.68 E-value=0.6 Score=51.60 Aligned_cols=117 Identities=15% Similarity=0.017 Sum_probs=71.7
Q ss_pred cEEEEEec--CCEEEEE-ECCeEEEEEeeccceeEEeee-ccCceeEEEEeccCCCCCCCCccccCcEEEEEEecCCeEE
Q psy7977 308 SISVVSCN--KNQVLCA-TGCDVYYLEVHGSEIKQLAHR-ALEYEVACLDISPLSNEETSSEPAKAQLAAVGLWTDISAR 383 (1225)
Q Consensus 308 ~Iv~As~n--~~~VlVa-sgg~Lv~feid~~~L~ev~~~-~l~~eIScLai~~~~~~~~~~~~~~s~~laVG~w~d~tv~ 383 (1225)
.|.+.+.+ +++++.+ .++.|.+++++.......... .-...|.|++..+- ....+++.|.. |++|+
T Consensus 13 ~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~---------~~~~~l~s~~~-dg~v~ 82 (379)
T 3jrp_A 13 LIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHP---------KFGTILASCSY-DGKVL 82 (379)
T ss_dssp CEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCG---------GGCSEEEEEET-TSCEE
T ss_pred cEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCC---------CCCCEEEEecc-CCEEE
Confidence 46666654 4556655 578898888874433332222 23567899998642 12568888887 99999
Q ss_pred EEeCCCcceEEeecCCC-CCCcccEEEEeeCCeeEEEEEECCCcEEEEEEcC
Q psy7977 384 LLSLPSLEEVCKEPLGG-EIIPRSILMTCFEGHCYLLVALGDGSMFYFSLDP 434 (1225)
Q Consensus 384 IlsL~~Le~v~~~~L~~-~~~P~SIll~~l~~~~~LlVGl~nG~L~~y~ld~ 434 (1225)
+|++.+-+......+.. .....++.+..-+...+|++|..||.+..|.+..
T Consensus 83 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~ 134 (379)
T 3jrp_A 83 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKE 134 (379)
T ss_dssp EEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCT
T ss_pred EEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCC
Confidence 99997644222222211 1122333333211156899999999999998764
No 34
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=96.68 E-value=0.67 Score=52.04 Aligned_cols=238 Identities=13% Similarity=0.092 Sum_probs=125.4
Q ss_pred CcEEEEecCCcceeeeecCCCCCcEEEEEec--CCEEEEE--ECCeEEEEEeeccceeEEeeeccCceeEEEEeccCCCC
Q psy7977 285 SAAILISTESKARVSSWEPPNGKSISVVSCN--KNQVLCA--TGCDVYYLEVHGSEIKQLAHRALEYEVACLDISPLSNE 360 (1225)
Q Consensus 285 ~~IRli~~~~~~~i~eW~~p~g~~Iv~As~n--~~~VlVa--sgg~Lv~feid~~~L~ev~~~~l~~eIScLai~~~~~~ 360 (1225)
+.|++++.+.++.+..+... ..+.+.+.. +.+++++ .++.|..+++..+++. ........+.++++.+-
T Consensus 12 ~~v~v~d~~~~~~~~~~~~~--~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~--~~~~~~~~v~~~~~spd--- 84 (391)
T 1l0q_A 12 DNISVIDVTSNKVTATIPVG--SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVI--ATVPAGSSPQGVAVSPD--- 84 (391)
T ss_dssp TEEEEEETTTTEEEEEEECS--SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEE--EEEECSSSEEEEEECTT---
T ss_pred CEEEEEECCCCeEEEEeecC--CCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEE--EEEECCCCccceEECCC---
Confidence 34666666655555554432 235555554 4566665 4788888877654332 23344558889998752
Q ss_pred CCCCccccCcEEEEEEecCCeEEEEeCCCcceEEeecCCCCCCcccEEEEeeCCeeEE-EEEECCCcEEEEEEcCCCCcc
Q psy7977 361 ETSSEPAKAQLAAVGLWTDISARLLSLPSLEEVCKEPLGGEIIPRSILMTCFEGHCYL-LVALGDGSMFYFSLDPASGRL 439 (1225)
Q Consensus 361 ~~~~~~~~s~~laVG~w~d~tv~IlsL~~Le~v~~~~L~~~~~P~SIll~~l~~~~~L-lVGl~nG~L~~y~ld~~sg~L 439 (1225)
.++++++...+++|++|++.+.+.+...... ..|.++.+.. ...+| +.+..+|.+..|.+. +++.
T Consensus 85 --------g~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~--~~~~~~~~s~--dg~~l~~~~~~~~~v~~~d~~--~~~~ 150 (391)
T 1l0q_A 85 --------GKQVYVTNMASSTLSVIDTTSNTVAGTVKTG--KSPLGLALSP--DGKKLYVTNNGDKTVSVINTV--TKAV 150 (391)
T ss_dssp --------SSEEEEEETTTTEEEEEETTTTEEEEEEECS--SSEEEEEECT--TSSEEEEEETTTTEEEEEETT--TTEE
T ss_pred --------CCEEEEEECCCCEEEEEECCCCeEEEEEeCC--CCcceEEECC--CCCEEEEEeCCCCEEEEEECC--CCcE
Confidence 4567777765899999999875554433322 2344444432 33445 567778888877654 3332
Q ss_pred ccceeeeecCccceEEEEeeCCceEEEEecC--CcEEEEEc-CCee-EEeecccccccccccCCCCCCCCeEEEEe----
Q psy7977 440 TDKKKVTLGTQPTVLKTFRSLSTTNVFACSD--RPTVIYSS-NHKL-VFSNVNLRQVNHMCSLNAESYPDSLALAT---- 511 (1225)
Q Consensus 440 s~~k~~~LG~~pV~L~~~~~~g~~~Vfa~sd--rP~liyss-~g~l-~~~pl~~~~v~~~s~F~se~~p~glv~vs---- 511 (1225)
. +....+..| .-..+..+| ..+++.+. ....++.- .++. ...+.. ..+.+ ..|+. ....++...
T Consensus 151 ~--~~~~~~~~~-~~~~~~~dg-~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~-~~~~~--~g~~l~~~~~~~~ 222 (391)
T 1l0q_A 151 I--NTVSVGRSP-KGIAVTPDG-TKVYVANFDSMSISVIDTVTNSVIDTVKVE-AAPSG-IAVNP--EGTKAYVTNVDKY 222 (391)
T ss_dssp E--EEEECCSSE-EEEEECTTS-SEEEEEETTTTEEEEEETTTTEEEEEEECS-SEEEE-EEECT--TSSEEEEEEECSS
T ss_pred E--EEEecCCCc-ceEEECCCC-CEEEEEeCCCCEEEEEECCCCeEEEEEecC-CCccc-eEECC--CCCEEEEEecCcC
Confidence 1 112223333 222222222 33433332 22233332 2222 111111 11111 12221 112333333
Q ss_pred CCeEEEEEEcCCCCeeeEEEeCCCcccEEEEecCCCEEEEEE
Q psy7977 512 DSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVIT 553 (1225)
Q Consensus 512 ~~~LrI~~i~~~~~l~ir~IpLg~TprrIay~p~s~~~vV~t 553 (1225)
++.+++..+. ..-.++.++.+..|..++++|..+.+++.+
T Consensus 223 ~~~v~~~d~~--~~~~~~~~~~~~~~~~~~~s~dg~~l~~s~ 262 (391)
T 1l0q_A 223 FNTVSMIDTG--TNKITARIPVGPDPAGIAVTPDGKKVYVAL 262 (391)
T ss_dssp CCEEEEEETT--TTEEEEEEECCSSEEEEEECTTSSEEEEEE
T ss_pred CCcEEEEECC--CCeEEEEEecCCCccEEEEccCCCEEEEEc
Confidence 3566665553 334567888888999999999998777765
No 35
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=96.65 E-value=0.87 Score=50.26 Aligned_cols=118 Identities=10% Similarity=0.006 Sum_probs=74.1
Q ss_pred CcEEEEEec----CCEEEEE-ECCeEEEEEeeccceeEEee-eccCceeEEEEeccCCCCCCCCccccCcEEEEEEecCC
Q psy7977 307 KSISVVSCN----KNQVLCA-TGCDVYYLEVHGSEIKQLAH-RALEYEVACLDISPLSNEETSSEPAKAQLAAVGLWTDI 380 (1225)
Q Consensus 307 ~~Iv~As~n----~~~VlVa-sgg~Lv~feid~~~L~ev~~-~~l~~eIScLai~~~~~~~~~~~~~~s~~laVG~w~d~ 380 (1225)
..|.+.+.. +.+++.+ .++.|.++++..++...... ......|.|++..+. ....++++|.. |+
T Consensus 56 ~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~---------~~~~~l~~~~~-d~ 125 (379)
T 3jrp_A 56 GPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPH---------EYGPLLLVASS-DG 125 (379)
T ss_dssp SCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCG---------GGCSEEEEEET-TS
T ss_pred CcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCC---------CCCCEEEEecC-CC
Confidence 457777764 4566666 57899999988765433332 234578999998652 11567888887 99
Q ss_pred eEEEEeCCCcceEEeecCCC-CCCcccEEEEee-----------CCeeEEEEEECCCcEEEEEEcC
Q psy7977 381 SARLLSLPSLEEVCKEPLGG-EIIPRSILMTCF-----------EGHCYLLVALGDGSMFYFSLDP 434 (1225)
Q Consensus 381 tv~IlsL~~Le~v~~~~L~~-~~~P~SIll~~l-----------~~~~~LlVGl~nG~L~~y~ld~ 434 (1225)
+|++|++..........+.. .....++.+... ++..+|+.|..||.+..|.+..
T Consensus 126 ~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 191 (379)
T 3jrp_A 126 KVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNS 191 (379)
T ss_dssp EEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEET
T ss_pred cEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecC
Confidence 99999997542221111110 111123332221 0357899999999999998864
No 36
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=96.64 E-value=1.5 Score=50.60 Aligned_cols=111 Identities=11% Similarity=0.069 Sum_probs=73.9
Q ss_pred EEEEEecCCEEEEE-ECCeEEEEEeeccceeEEeeeccCceeEEEEeccCCCCCCCCccccCcEEEEEEecCCeEEEEeC
Q psy7977 309 ISVVSCNKNQVLCA-TGCDVYYLEVHGSEIKQLAHRALEYEVACLDISPLSNEETSSEPAKAQLAAVGLWTDISARLLSL 387 (1225)
Q Consensus 309 Iv~As~n~~~VlVa-sgg~Lv~feid~~~L~ev~~~~l~~eIScLai~~~~~~~~~~~~~~s~~laVG~w~d~tv~IlsL 387 (1225)
+.+.+..+++++.+ .++.|.++++..++.... -..-...|.|++..+ ...++.|.. |++|++|++
T Consensus 125 ~~~~~~~~~~l~sgs~dg~i~vwd~~~~~~~~~-~~~h~~~V~~l~~~~------------~~~l~s~s~-dg~i~vwd~ 190 (464)
T 3v7d_B 125 ITCLQFEDNYVITGADDKMIRVYDSINKKFLLQ-LSGHDGGVWALKYAH------------GGILVSGST-DRTVRVWDI 190 (464)
T ss_dssp EEEEEEETTEEEEEETTSCEEEEETTTTEEEEE-ECCCSSCEEEEEECS------------TTEEEEEET-TSCEEEEET
T ss_pred EEEEEECCCEEEEEcCCCcEEEEECCCCcEEEE-EeCCCcCEEEEEEcC------------CCEEEEEeC-CCCEEEEEC
Confidence 56666677777766 688999998765532221 112456788998853 237888887 999999999
Q ss_pred CCcceEEeecCCCCCCcccEEEEeeCCeeEEEEEECCCcEEEEEEcC
Q psy7977 388 PSLEEVCKEPLGGEIIPRSILMTCFEGHCYLLVALGDGSMFYFSLDP 434 (1225)
Q Consensus 388 ~~Le~v~~~~L~~~~~P~SIll~~l~~~~~LlVGl~nG~L~~y~ld~ 434 (1225)
.+.+.+..-.-. .....++.+...++..+|+.|..||.+..|.+..
T Consensus 191 ~~~~~~~~~~~h-~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~ 236 (464)
T 3v7d_B 191 KKGCCTHVFEGH-NSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPK 236 (464)
T ss_dssp TTTEEEEEECCC-SSCEEEEEEEESSSCEEEEEEETTSCEEEEECCC
T ss_pred CCCcEEEEECCC-CCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCC
Confidence 875544332111 1222345555444568899999999999998764
No 37
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=96.64 E-value=1 Score=50.90 Aligned_cols=280 Identities=13% Similarity=0.095 Sum_probs=136.8
Q ss_pred eeEEEecCCe-EEEEeecC----CeEEEEEeeCCCCCCCceEEEeeeeccccceeeEEeeccccCCccEEEEEecCCCcc
Q psy7977 123 ECLTYLDNGV-VFVGSRLG----DSQLVKLNRSPDENGTYVSVMESFTNLAPIIDMVVVDLERQGQGQLVTCSGGFKEGS 197 (1225)
Q Consensus 123 SsL~~L~~g~-LFvGS~~G----DS~L~~i~~~~ddd~~~l~v~d~l~NlgPI~D~~v~d~~~~~~~qLva~sG~g~~Gs 197 (1225)
.++.+-.+|- |..||..+ |..+.-|.......... ........-++|.+++... ..+++++++ +|+
T Consensus 46 ~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~-~~~~~~~~~~~V~~~~~s~-----d~~~l~~s~---dg~ 116 (357)
T 4g56_B 46 GAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNES-LCTAGVQTEAGVTDVAWVS-----EKGILVASD---SGA 116 (357)
T ss_dssp EEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGG-GCSEEEECSSCEEEEEEET-----TTEEEEEET---TSC
T ss_pred EEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCccee-EecccCCCCCCEEEEEEcC-----CCCEEEEEC---CCE
Confidence 4555555665 44455432 55555554321100000 0112233445688877753 246776553 678
Q ss_pred EEEEe--ecceeeEEEEeeCCCcceEeEeeeCCCCCCccEEEEEcCCce-EEEEEcC-ceeeeeccCCcccccCeEEEEe
Q psy7977 198 LRIIR--NGIGIEEHACIDLPGIKGIWALSIGSPKNLDNTLVLSFVGHT-RVLTLSG-AEVEETEMGGFTSDQQTFYCGN 273 (1225)
Q Consensus 198 LrilR--~GI~~~~~~s~eLpgv~~iWtl~~~~~~~~d~yLVlSf~~~T-~Vl~i~g-e~veEv~~sgF~~~~~TL~ag~ 273 (1225)
+++.. .|=............-..++++.... ...+|+....+.+ +++.+.. +.+..... ....+.+-.
T Consensus 117 v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~sp---dg~~l~sgs~dg~v~iwd~~~~~~~~~~~~-----h~~~v~~v~ 188 (357)
T 4g56_B 117 VELWEILEKESLLVNKFAKYEHDDIVKTLSVFS---DGTQAVSGGKDFSVKVWDLSQKAVLKSYNA-----HSSEVNCVA 188 (357)
T ss_dssp EEEC--------CCCCEEECCCSSCEEEEEECS---SSSEEEEEETTSCEEEEETTTTEEEEEECC-----CSSCEEEEE
T ss_pred EEEeeccccceeEEEeeccCCCCCCEEEEEECC---CCCEEEEEeCCCeEEEEECCCCcEEEEEcC-----CCCCEEEEE
Confidence 88753 22111100001111223566666543 3456666555544 3444321 12222211 011111111
Q ss_pred e---CCCeEEEEcc-CcEEEEecCCcceeeeecCC-CCCcEEEEEec--CC-EEEEE-ECCeEEEEEeeccceeEEeeec
Q psy7977 274 V---DPRTVLQVTP-SAAILISTESKARVSSWEPP-NGKSISVVSCN--KN-QVLCA-TGCDVYYLEVHGSEIKQLAHRA 344 (1225)
Q Consensus 274 l---~~~~iVQVT~-~~IRli~~~~~~~i~eW~~p-~g~~Iv~As~n--~~-~VlVa-sgg~Lv~feid~~~L~ev~~~~ 344 (1225)
+ ++..++=... ..|++.+...++........ ....+.+.+.+ +. +++.+ .++.|.++++...+.... ...
T Consensus 189 ~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~-~~~ 267 (357)
T 4g56_B 189 ACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQT-SAV 267 (357)
T ss_dssp ECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEE-ECC
T ss_pred EccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEE-Eec
Confidence 1 1122332222 34777776554444433322 23356666664 23 44444 578898888765533221 112
Q ss_pred cCceeEEEEeccCCCCCCCCccccCcEEEEEEecCCeEEEEeCCCcceEEeecCCCCCCcccEEEEeeCCeeEEEEEECC
Q psy7977 345 LEYEVACLDISPLSNEETSSEPAKAQLAAVGLWTDISARLLSLPSLEEVCKEPLGGEIIPRSILMTCFEGHCYLLVALGD 424 (1225)
Q Consensus 345 l~~eIScLai~~~~~~~~~~~~~~s~~laVG~w~d~tv~IlsL~~Le~v~~~~L~~~~~P~SIll~~l~~~~~LlVGl~n 424 (1225)
....|.|+++.+. ...+++.|.. |++|+||++..-+.+....- .....++++... +..+|.-+-.|
T Consensus 268 ~~~~v~~l~~sp~----------~~~~lasgs~-D~~i~iwd~~~~~~~~~~~H--~~~V~~vafsP~-d~~~l~s~s~D 333 (357)
T 4g56_B 268 HSQNITGLAYSYH----------SSPFLASISE-DCTVAVLDADFSEVFRDLSH--RDFVTGVAWSPL-DHSKFTTVGWD 333 (357)
T ss_dssp CSSCEEEEEECSS----------SSCCEEEEET-TSCEEEECTTSCEEEEECCC--SSCEEEEEECSS-STTEEEEEETT
T ss_pred cceeEEEEEEcCC----------CCCEEEEEeC-CCEEEEEECCCCcEeEECCC--CCCEEEEEEeCC-CCCEEEEEcCC
Confidence 3567899998752 2467888886 99999999976544432211 122234444322 24567788899
Q ss_pred CcEEEEEEcC
Q psy7977 425 GSMFYFSLDP 434 (1225)
Q Consensus 425 G~L~~y~ld~ 434 (1225)
|.+..+.+..
T Consensus 334 g~v~iW~~~~ 343 (357)
T 4g56_B 334 HKVLHHHLPS 343 (357)
T ss_dssp SCEEEEECC-
T ss_pred CeEEEEECCC
Confidence 9999998864
No 38
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=96.62 E-value=1.6 Score=50.62 Aligned_cols=225 Identities=10% Similarity=0.051 Sum_probs=120.9
Q ss_pred cEEEEEec--CCEEEE-E-ECCeEEEEEee--ccc-eeEEeeeccCceeEEEEeccCCCCCCCCccccCcEEEEEEecCC
Q psy7977 308 SISVVSCN--KNQVLC-A-TGCDVYYLEVH--GSE-IKQLAHRALEYEVACLDISPLSNEETSSEPAKAQLAAVGLWTDI 380 (1225)
Q Consensus 308 ~Iv~As~n--~~~VlV-a-sgg~Lv~feid--~~~-L~ev~~~~l~~eIScLai~~~~~~~~~~~~~~s~~laVG~w~d~ 380 (1225)
.|.+.+.+ +.++++ + .++.+.++++. .++ +..+.....+..|.|+++.+- ..++++|.. ++
T Consensus 104 ~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-----------~~~l~~~~~-~g 171 (450)
T 2vdu_B 104 YIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAED-----------DTTVIIADK-FG 171 (450)
T ss_dssp CEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTT-----------SSEEEEEET-TS
T ss_pred ceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCC-----------CCEEEEEeC-CC
Confidence 47777665 455534 4 57899999988 543 334443456678999998752 468889987 99
Q ss_pred eEEEEeCCCcceEE--eecCCC-CCCcccEEEEee-CCeeEEEEEECCCcEEEEEEcCCCCccccceeeee-cC-ccceE
Q psy7977 381 SARLLSLPSLEEVC--KEPLGG-EIIPRSILMTCF-EGHCYLLVALGDGSMFYFSLDPASGRLTDKKKVTL-GT-QPTVL 454 (1225)
Q Consensus 381 tv~IlsL~~Le~v~--~~~L~~-~~~P~SIll~~l-~~~~~LlVGl~nG~L~~y~ld~~sg~Ls~~k~~~L-G~-~pV~L 454 (1225)
.++++.+.+.+... ...+.. .....++.+..- ++..+|+.|..||.+..|.+.. ++. ...++ |. .+|.-
T Consensus 172 ~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~--~~~---~~~~~~~h~~~v~~ 246 (450)
T 2vdu_B 172 DVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQ--CFI---VDKWLFGHKHFVSS 246 (450)
T ss_dssp EEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESC--TTC---EEEECCCCSSCEEE
T ss_pred cEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCC--Cce---eeeeecCCCCceEE
Confidence 99999997543221 111110 122344544432 1267899999999999998863 221 11112 22 33433
Q ss_pred EEEeeCCceEEEEecCCcEEEEEc-CCe-eEEeeccccccccc-----------------------ccCCCCCCCCeEEE
Q psy7977 455 KTFRSLSTTNVFACSDRPTVIYSS-NHK-LVFSNVNLRQVNHM-----------------------CSLNAESYPDSLAL 509 (1225)
Q Consensus 455 ~~~~~~g~~~Vfa~sdrP~liyss-~g~-l~~~pl~~~~v~~~-----------------------s~F~se~~p~glv~ 509 (1225)
..+. ++..-+.+..+.-..++.- .++ +...++.. .+..+ ..+....-...++.
T Consensus 247 ~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~ 324 (450)
T 2vdu_B 247 ICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNS-LIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAF 324 (450)
T ss_dssp EEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHH-HHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEE
T ss_pred EEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchh-hhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEE
Confidence 3334 3322222222333334432 232 22222110 00000 00000011233444
Q ss_pred Ee--CCeEEEEEE--cCCCC-eeeEEEeCCCcccEEEEecCCCEEEEEE
Q psy7977 510 AT--DSTFTFGTI--DEIQK-LHIRTVPLGEAPRRIAYQESSQTFGVIT 553 (1225)
Q Consensus 510 vs--~~~LrI~~i--~~~~~-l~ir~IpLg~TprrIay~p~s~~~vV~t 553 (1225)
.. ++.++|..+ ....+ ..+++++....+..++++| . .++++.
T Consensus 325 ~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~~~v~~~~~~~-~-~~~v~~ 371 (450)
T 2vdu_B 325 FVEATKCIIILEMSEKQKGDLALKQIITFPYNVISLSAHN-D-EFQVTL 371 (450)
T ss_dssp EETTCSEEEEEEECSSSTTCEEEEEEEECSSCEEEEEEET-T-EEEEEE
T ss_pred EECCCCeEEEEEeccCCCCceeeccEeccCCceEEEEecC-C-cEEEEE
Confidence 43 578999999 33223 4567788889999999999 3 344444
No 39
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=96.61 E-value=1.2 Score=48.95 Aligned_cols=240 Identities=8% Similarity=0.056 Sum_probs=123.6
Q ss_pred cEEEEecCCcceeeeecCCCCCcEEEEEecCCEEEEE--ECCeEEEEEeeccceeEEeeeccC----------ceeEEEE
Q psy7977 286 AAILISTESKARVSSWEPPNGKSISVVSCNKNQVLCA--TGCDVYYLEVHGSEIKQLAHRALE----------YEVACLD 353 (1225)
Q Consensus 286 ~IRli~~~~~~~i~eW~~p~g~~Iv~As~n~~~VlVa--sgg~Lv~feid~~~L~ev~~~~l~----------~eIScLa 353 (1225)
.|.+++.++++.+..+..+....-...+-.+.+++++ .++.|..++...+++.. ..... ..+.+++
T Consensus 70 ~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 147 (353)
T 3vgz_A 70 VVYRLDPVTLEVTQAIHNDLKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKG--RLVLDDRKRTEEVRPLQPRELV 147 (353)
T ss_dssp EEEEECTTTCCEEEEEEESSCCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEE--EEESCCCCCCSSCCCCEEEEEE
T ss_pred cEEEEcCCCCeEEEEEecCCCcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEE--EEecCCCccccccCCCCCceEE
Confidence 4566666555555555432221112233345667776 35778877766544322 11221 1366777
Q ss_pred eccCCCCCCCCccccCcEEEEEEe-cCCeEEEEeCCCcceEEeecCCCCCCcccEEEEeeCCeeEEEEEECCCcEEEEEE
Q psy7977 354 ISPLSNEETSSEPAKAQLAAVGLW-TDISARLLSLPSLEEVCKEPLGGEIIPRSILMTCFEGHCYLLVALGDGSMFYFSL 432 (1225)
Q Consensus 354 i~~~~~~~~~~~~~~s~~laVG~w-~d~tv~IlsL~~Le~v~~~~L~~~~~P~SIll~~l~~~~~LlVGl~nG~L~~y~l 432 (1225)
+.+- .+.++++.+ .++.|.++++.+.+.+...... ...|..+.+.. ...+|+++..+|.+..+.
T Consensus 148 ~s~d-----------g~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~s~--dg~~l~~~~~~~~i~~~d- 212 (353)
T 3vgz_A 148 ADDA-----------TNTVYISGIGKESVIWVVDGGNIKLKTAIQNT-GKMSTGLALDS--EGKRLYTTNADGELITID- 212 (353)
T ss_dssp EETT-----------TTEEEEEEESSSCEEEEEETTTTEEEEEECCC-CTTCCCCEEET--TTTEEEEECTTSEEEEEE-
T ss_pred ECCC-----------CCEEEEEecCCCceEEEEcCCCCceEEEecCC-CCccceEEECC--CCCEEEEEcCCCeEEEEE-
Confidence 7652 346777775 4788999999877665543321 23466776653 345788888999887654
Q ss_pred cCCCCccccceeeeecCc-cce-E--EEEeeCCceEEEEecCC-c-EEEEEc-CCe-eEEeecccccccccccCCCCCCC
Q psy7977 433 DPASGRLTDKKKVTLGTQ-PTV-L--KTFRSLSTTNVFACSDR-P-TVIYSS-NHK-LVFSNVNLRQVNHMCSLNAESYP 504 (1225)
Q Consensus 433 d~~sg~Ls~~k~~~LG~~-pV~-L--~~~~~~g~~~Vfa~sdr-P-~liyss-~g~-l~~~pl~~~~v~~~s~F~se~~p 504 (1225)
..+++... ....+.. +.. . ..+..+| ..+++.+.. . ..++.. .++ ....++.. + ....|+.. .
T Consensus 213 -~~~~~~~~--~~~~~~~~~~~~~~~~~~s~dg-~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~--~~~~~s~d--g 283 (353)
T 3vgz_A 213 -TADNKILS--RKKLLDDGKEHFFINISLDTAR-QRAFITDSKAAEVLVVDTRNGNILAKVAAPE-S--LAVLFNPA--R 283 (353)
T ss_dssp -TTTTEEEE--EEECCCSSSCCCEEEEEEETTT-TEEEEEESSSSEEEEEETTTCCEEEEEECSS-C--CCEEEETT--T
T ss_pred -CCCCeEEE--EEEcCCCCCCcccceEEECCCC-CEEEEEeCCCCEEEEEECCCCcEEEEEEcCC-C--ceEEECCC--C
Confidence 44444321 1222211 111 1 1122223 334444332 2 223332 222 22222211 1 11112111 1
Q ss_pred CeEEEEeC--CeEEEEEEcCCCCeeeEEEeCCCcccEEEEecCCCEEEEEE
Q psy7977 505 DSLALATD--STFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVIT 553 (1225)
Q Consensus 505 ~glv~vs~--~~LrI~~i~~~~~l~ir~IpLg~TprrIay~p~s~~~vV~t 553 (1225)
+.+.++.. +.+.+.. ....-..+.++.+..|+.++++|..+.++|..
T Consensus 284 ~~l~v~~~~~~~v~~~d--~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~ 332 (353)
T 3vgz_A 284 NEAYVTHRQAGKVSVID--AKSYKVVKTFDTPTHPNSLALSADGKTLYVSV 332 (353)
T ss_dssp TEEEEEETTTTEEEEEE--TTTTEEEEEEECCSEEEEEEECTTSCEEEEEE
T ss_pred CEEEEEECCCCeEEEEE--CCCCeEEEEEecCCCCCeEEEcCCCCEEEEEE
Confidence 22333332 4555544 43445667899999999999999999877776
No 40
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=96.60 E-value=0.48 Score=53.19 Aligned_cols=121 Identities=12% Similarity=0.029 Sum_probs=74.3
Q ss_pred CCcEEEEEecCCEEEEE-ECCeEEEEEeeccc----eeEEe-eeccCceeEEEEeccCCCCCCCCccccC---cEEEEEE
Q psy7977 306 GKSISVVSCNKNQVLCA-TGCDVYYLEVHGSE----IKQLA-HRALEYEVACLDISPLSNEETSSEPAKA---QLAAVGL 376 (1225)
Q Consensus 306 g~~Iv~As~n~~~VlVa-sgg~Lv~feid~~~----L~ev~-~~~l~~eIScLai~~~~~~~~~~~~~~s---~~laVG~ 376 (1225)
...|.+.+.+.++++.+ .++.|.+++++..+ +.... -..-...|.|++..+..+ ... .+++.|.
T Consensus 16 ~~~i~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-------~~g~~~~~l~s~~ 88 (397)
T 1sq9_A 16 DADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIE-------RDAFELCLVATTS 88 (397)
T ss_dssp SSCEEEEEECSSEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEE-------TTTEEEEEEEEEE
T ss_pred hcCeEEEEecCCeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccc-------cCCccccEEEEEc
Confidence 34688888888777766 68899999887654 11111 123456789998865200 013 6788888
Q ss_pred ecCCeEEEEeCCCcce-----EEee-cCCC---CCCcccEEEEee--CCeeE-EEEEECCCcEEEEEEcC
Q psy7977 377 WTDISARLLSLPSLEE-----VCKE-PLGG---EIIPRSILMTCF--EGHCY-LLVALGDGSMFYFSLDP 434 (1225)
Q Consensus 377 w~d~tv~IlsL~~Le~-----v~~~-~L~~---~~~P~SIll~~l--~~~~~-LlVGl~nG~L~~y~ld~ 434 (1225)
. |++|++|++.+.+. +... .... .....++.+... ....+ |++|..||.+..|.+..
T Consensus 89 ~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 157 (397)
T 1sq9_A 89 F-SGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHP 157 (397)
T ss_dssp T-TSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEES
T ss_pred C-CCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCc
Confidence 7 99999999965332 2221 1100 022234444411 24567 99999999999998875
No 41
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=96.53 E-value=0.59 Score=53.63 Aligned_cols=241 Identities=11% Similarity=0.070 Sum_probs=116.9
Q ss_pred ceeEEEec-CC-eEEEEeecCCeEEEEEeeCCCCCCCceEEEeeeeccccceeeEEeeccccCCccEEEEEecCCCccEE
Q psy7977 122 PECLTYLD-NG-VVFVGSRLGDSQLVKLNRSPDENGTYVSVMESFTNLAPIIDMVVVDLERQGQGQLVTCSGGFKEGSLR 199 (1225)
Q Consensus 122 ~SsL~~L~-~g-~LFvGS~~GDS~L~~i~~~~ddd~~~l~v~d~l~NlgPI~D~~v~d~~~~~~~qLva~sG~g~~GsLr 199 (1225)
..+++.-. ++ +|..||..|.=.++.+..... ...++....+..-+||.++++.. ..+.+++++ .+|.++
T Consensus 66 V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~--~~~~~~~~~~~h~~~v~~~~~~~-----~~~~l~s~s--~dg~i~ 136 (437)
T 3gre_A 66 ITSSAVSPGETPYLITGSDQGVIKIWNLKEIIV--GEVYSSSLTYDCSSTVTQITMIP-----NFDAFAVSS--KDGQII 136 (437)
T ss_dssp EEEEEEECSSSCEEEEEETTSEEEEEEHHHHHT--TCCCSCSEEEECSSCEEEEEECT-----TSSEEEEEE--TTSEEE
T ss_pred eEEEEECCCCCCEEEEecCCceEEEeECccccc--CcccceeeeccCCCCEEEEEEeC-----CCCEEEEEe--CCCEEE
Confidence 35666655 44 666677555444554433110 00122223344568899888753 223343333 467888
Q ss_pred EEeec-----ceee-----EEEEeeCC------CcceEeEeeeCCCCCCccEEEEEcCCceE-EEEEc-CceeeeeccCC
Q psy7977 200 IIRNG-----IGIE-----EHACIDLP------GIKGIWALSIGSPKNLDNTLVLSFVGHTR-VLTLS-GAEVEETEMGG 261 (1225)
Q Consensus 200 ilR~G-----I~~~-----~~~s~eLp------gv~~iWtl~~~~~~~~d~yLVlSf~~~T~-Vl~i~-ge~veEv~~sg 261 (1225)
+..-. -... .+..+.+. .+..+|.... ....+|+.+..+.+. ++.+. ++.+.......
T Consensus 137 vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~ 212 (437)
T 3gre_A 137 VLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVN----EEKSLLVALTNLSRVIIFDIRTLERLQIIENSP 212 (437)
T ss_dssp EEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEEC----SSCEEEEEEETTSEEEEEETTTCCEEEEEECCG
T ss_pred EEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEc----CCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCC
Confidence 77432 1111 11112111 1233333321 124566665555443 44331 11222222100
Q ss_pred cccccCeEEEEee-CCC-eEEEEcc-CcEEEEecCCcceeeeecCCCCCcEEEEEec-----CC-EEEEE-ECCeEEEEE
Q psy7977 262 FTSDQQTFYCGNV-DPR-TVLQVTP-SAAILISTESKARVSSWEPPNGKSISVVSCN-----KN-QVLCA-TGCDVYYLE 331 (1225)
Q Consensus 262 F~~~~~TL~ag~l-~~~-~iVQVT~-~~IRli~~~~~~~i~eW~~p~g~~Iv~As~n-----~~-~VlVa-sgg~Lv~fe 331 (1225)
....+.+-.+ .++ .++=... ..|++++...++.+..|..+....|.+.+.. +. +++.+ .++.|.+++
T Consensus 213 ---h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd 289 (437)
T 3gre_A 213 ---RHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWN 289 (437)
T ss_dssp ---GGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEE
T ss_pred ---CCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEE
Confidence 0112222222 122 2332333 3488898877777888875555567776443 23 33334 578898888
Q ss_pred eecccee-EEeee-------c-----------------cCceeEEEEeccCCCCCCCCccccCcEEEEEEecCCeEEEEe
Q psy7977 332 VHGSEIK-QLAHR-------A-----------------LEYEVACLDISPLSNEETSSEPAKAQLAAVGLWTDISARLLS 386 (1225)
Q Consensus 332 id~~~L~-ev~~~-------~-----------------l~~eIScLai~~~~~~~~~~~~~~s~~laVG~w~d~tv~Ils 386 (1225)
+..++.. ..... . -...|+|+++. ...+++.|.. |++|++|+
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~------------~~~~l~s~~~-d~~i~~wd 356 (437)
T 3gre_A 290 FVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS------------NDKILLTDEA-TSSIVMFS 356 (437)
T ss_dssp TTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE------------TTEEEEEEGG-GTEEEEEE
T ss_pred cCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC------------CceEEEecCC-CCeEEEEE
Confidence 8654322 11100 0 12235555553 1357888876 99999999
Q ss_pred CCCcc
Q psy7977 387 LPSLE 391 (1225)
Q Consensus 387 L~~Le 391 (1225)
+.+.+
T Consensus 357 ~~~~~ 361 (437)
T 3gre_A 357 LNELS 361 (437)
T ss_dssp TTCGG
T ss_pred CCCcc
Confidence 97643
No 42
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=96.53 E-value=0.6 Score=51.06 Aligned_cols=175 Identities=11% Similarity=0.049 Sum_probs=96.5
Q ss_pred CceeEEEEeccCCCCCCCCccccCcEEEEEEecCCeEEEEeCCCcc----eEEeecCCCCCCcccEEEEeeCCee-EEEE
Q psy7977 346 EYEVACLDISPLSNEETSSEPAKAQLAAVGLWTDISARLLSLPSLE----EVCKEPLGGEIIPRSILMTCFEGHC-YLLV 420 (1225)
Q Consensus 346 ~~eIScLai~~~~~~~~~~~~~~s~~laVG~w~d~tv~IlsL~~Le----~v~~~~L~~~~~P~SIll~~l~~~~-~LlV 420 (1225)
...|+|+++.+. ..++++|.. |++|+||++...+ ....... .....++.+.. ... +|+.
T Consensus 11 ~~~v~~~~~s~~-----------~~~l~~~~~-d~~v~iw~~~~~~~~~~~~~~~~~--~~~v~~~~~~~--~~~~~l~~ 74 (342)
T 1yfq_A 11 KDYISDIKIIPS-----------KSLLLITSW-DGSLTVYKFDIQAKNVDLLQSLRY--KHPLLCCNFID--NTDLQIYV 74 (342)
T ss_dssp SSCEEEEEEEGG-----------GTEEEEEET-TSEEEEEEEETTTTEEEEEEEEEC--SSCEEEEEEEE--SSSEEEEE
T ss_pred CCcEEEEEEcCC-----------CCEEEEEcC-CCeEEEEEeCCCCccccceeeeec--CCceEEEEECC--CCCcEEEE
Confidence 467899998762 467888887 9999999997544 2222221 12233444432 345 8999
Q ss_pred EECCCcEEEEEE-cCCCCccccceeeeec----CccceEEEEeeCCceEEEEecCCcEEEEEcCCeeEEeeccc------
Q psy7977 421 ALGDGSMFYFSL-DPASGRLTDKKKVTLG----TQPTVLKTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNL------ 489 (1225)
Q Consensus 421 Gl~nG~L~~y~l-d~~sg~Ls~~k~~~LG----~~pV~L~~~~~~g~~~Vfa~sdrP~liyss~g~l~~~pl~~------ 489 (1225)
|..||.+..|.+ .. ++. ..+. ..++.-..+.. + ..+++.+ ..+.++++.+..
T Consensus 75 ~~~dg~i~~wd~~~~--~~~-----~~~~~~~~~~~v~~l~~~~-~-~~l~s~~--------~d~~i~iwd~~~~~~~~~ 137 (342)
T 1yfq_A 75 GTVQGEILKVDLIGS--PSF-----QALTNNEANLGICRICKYG-D-DKLIAAS--------WDGLIEVIDPRNYGDGVI 137 (342)
T ss_dssp EETTSCEEEECSSSS--SSE-----EECBSCCCCSCEEEEEEET-T-TEEEEEE--------TTSEEEEECHHHHTTBCE
T ss_pred EcCCCeEEEEEeccC--Cce-----EeccccCCCCceEEEEeCC-C-CEEEEEc--------CCCeEEEEcccccccccc
Confidence 999999999877 53 222 1121 12222222211 1 2222222 233344333321
Q ss_pred ---c-cccccc---cCC-CCCCCCeEEEEe-CCeEEEEEEcC-CC-CeeeEEEeCCCcccEEEEec-CCCEEEEEE
Q psy7977 490 ---R-QVNHMC---SLN-AESYPDSLALAT-DSTFTFGTIDE-IQ-KLHIRTVPLGEAPRRIAYQE-SSQTFGVIT 553 (1225)
Q Consensus 490 ---~-~v~~~s---~F~-se~~p~glv~vs-~~~LrI~~i~~-~~-~l~ir~IpLg~TprrIay~p-~s~~~vV~t 553 (1225)
. .+..+. +.. -...|++++..+ ++.+++..+.. .. .......+....++.++++| ..+.++++.
T Consensus 138 ~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~ 213 (342)
T 1yfq_A 138 AVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSS 213 (342)
T ss_dssp EEEESCSSSSSSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEE
T ss_pred cccCCeeeEEeeCCceEEEEecCCcEEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEe
Confidence 1 111110 000 011355655554 46899998876 43 24445556677899999999 888887776
No 43
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=96.49 E-value=1.1 Score=49.12 Aligned_cols=113 Identities=11% Similarity=-0.038 Sum_probs=72.6
Q ss_pred CcEEEEEecCC------EEEEE-ECCeEEEEEeeccceeEEeeeccCceeEEEEeccCCCCCCCCccccCcEEEEEEecC
Q psy7977 307 KSISVVSCNKN------QVLCA-TGCDVYYLEVHGSEIKQLAHRALEYEVACLDISPLSNEETSSEPAKAQLAAVGLWTD 379 (1225)
Q Consensus 307 ~~Iv~As~n~~------~VlVa-sgg~Lv~feid~~~L~ev~~~~l~~eIScLai~~~~~~~~~~~~~~s~~laVG~w~d 379 (1225)
..|.+.+.+.. +++.+ .++.|.++++..++.... -......|.|++..+. ...+++.|.. |
T Consensus 70 ~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~-~~~~~~~i~~~~~~~~----------~~~~l~s~~~-d 137 (366)
T 3k26_A 70 ENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKH-YVGHGNAINELKFHPR----------DPNLLLSVSK-D 137 (366)
T ss_dssp CCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEE-EESCCSCEEEEEECSS----------CTTEEEEEET-T
T ss_pred CcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeee-ecCCCCcEEEEEECCC----------CCCEEEEEeC-C
Confidence 45777666533 45555 578899888775543221 1224578999998652 2567888887 9
Q ss_pred CeEEEEeCCCcceEEee-cCCC-CCCcccEEEEeeCCeeEEEEEECCCcEEEEEEc
Q psy7977 380 ISARLLSLPSLEEVCKE-PLGG-EIIPRSILMTCFEGHCYLLVALGDGSMFYFSLD 433 (1225)
Q Consensus 380 ~tv~IlsL~~Le~v~~~-~L~~-~~~P~SIll~~l~~~~~LlVGl~nG~L~~y~ld 433 (1225)
++|++|++.+.+.+... .+.. .....++.+. +...+|+.|..||.+..|.+.
T Consensus 138 g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~dg~i~i~d~~ 191 (366)
T 3k26_A 138 HALRLWNIQTDTLVAIFGGVEGHRDEVLSADYD--LLGEKIMSCGMDHSLKLWRIN 191 (366)
T ss_dssp SCEEEEETTTTEEEEEECSTTSCSSCEEEEEEC--TTSSEEEEEETTSCEEEEESC
T ss_pred CeEEEEEeecCeEEEEecccccccCceeEEEEC--CCCCEEEEecCCCCEEEEECC
Confidence 99999999875554432 1111 1222333332 245689999999999999875
No 44
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=96.48 E-value=1.5 Score=48.58 Aligned_cols=273 Identities=10% Similarity=0.062 Sum_probs=138.8
Q ss_pred eEEEEeecCC--e--EEEEEeeCCCCCCCceEEEeeeeccccceeeEEeeccccCCccEEEEEecCCCccEEEEeecc-e
Q psy7977 132 VVFVGSRLGD--S--QLVKLNRSPDENGTYVSVMESFTNLAPIIDMVVVDLERQGQGQLVTCSGGFKEGSLRIIRNGI-G 206 (1225)
Q Consensus 132 ~LFvGS~~GD--S--~L~~i~~~~ddd~~~l~v~d~l~NlgPI~D~~v~d~~~~~~~qLva~sG~g~~GsLrilR~GI-~ 206 (1225)
.+|+|+-.++ . .++.+... ...++.+......+....+++.. ..+|++++..+.++.+.++.-.= .
T Consensus 4 ~~~vg~y~~~~~~~i~v~~~d~~----tg~~~~~~~~~~~~~p~~~a~sp-----dg~l~~~~~~~~~~~v~~~~~~~g~ 74 (347)
T 3hfq_A 4 RILFGTYTKKTSQGIYQGTLDTT----AKTLTNDGLLAATQNPTYLALSA-----KDCLYSVDKEDDEGGIAAWQIDGQT 74 (347)
T ss_dssp EEEEEECCSSSCCEEEEEEEETT----TTEEEEEEEEEECSCCCCEEECT-----TCEEEEEEEETTEEEEEEEEEETTE
T ss_pred EEEEEeccCCCCCCEEEEEEcCC----CCeEEEeeeeeccCCcceEEEcc-----CCeEEEEEecCCCceEEEEEecCCc
Confidence 5788865432 2 24444332 12345444454445445555532 22388777767778888876521 2
Q ss_pred eeEEEEee--CCCcceEeEeeeCCCCCCccEEEEEc-CCc-eEEEEEcCc-eeeee---ccC----------------Cc
Q psy7977 207 IEEHACID--LPGIKGIWALSIGSPKNLDNTLVLSF-VGH-TRVLTLSGA-EVEET---EMG----------------GF 262 (1225)
Q Consensus 207 ~~~~~s~e--Lpgv~~iWtl~~~~~~~~d~yLVlSf-~~~-T~Vl~i~ge-~veEv---~~s----------------gF 262 (1225)
.+.+.... ...+..+ ... ...++|+++. .+. -.++.++.+ .+..+ ... .|
T Consensus 75 ~~~~~~~~~~~~~p~~~---a~s---pdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 148 (347)
T 3hfq_A 75 AHKLNTVVAPGTPPAYV---AVD---EARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDL 148 (347)
T ss_dssp EEEEEEEEEESCCCSEE---EEE---TTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEE
T ss_pred EEEeeeeecCCCCCEEE---EEC---CCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEE
Confidence 22333321 1122222 211 1235565554 433 346666321 22222 111 12
Q ss_pred ccccCeEEEEeeCCCeEEEEccCcEEEEecC-Ccc--eeeeecCCCCCcEEEEEec--CCEEEEE--ECCeEEEEEeec-
Q psy7977 263 TSDQQTFYCGNVDPRTVLQVTPSAAILISTE-SKA--RVSSWEPPNGKSISVVSCN--KNQVLCA--TGCDVYYLEVHG- 334 (1225)
Q Consensus 263 ~~~~~TL~ag~l~~~~iVQVT~~~IRli~~~-~~~--~i~eW~~p~g~~Iv~As~n--~~~VlVa--sgg~Lv~feid~- 334 (1225)
..+.. +++...+ .+.|++++.+ .++ .......+.+....+.++. +.+++++ .++.+..+.++.
T Consensus 149 spdg~-l~v~~~~--------~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~ 219 (347)
T 3hfq_A 149 TPDNR-LAVIDLG--------SDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQ 219 (347)
T ss_dssp CTTSC-EEEEETT--------TTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETT
T ss_pred CCCCc-EEEEeCC--------CCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCC
Confidence 22222 3333322 2346666654 221 2222223333334444443 4567776 367888888875
Q ss_pred -cceeEEeeec-cC------ceeEEEEeccCCCCCCCCccccCcEEEEEEecCCeEEEEeCC---CcceEEeecCCCCCC
Q psy7977 335 -SEIKQLAHRA-LE------YEVACLDISPLSNEETSSEPAKAQLAAVGLWTDISARLLSLP---SLEEVCKEPLGGEII 403 (1225)
Q Consensus 335 -~~L~ev~~~~-l~------~eIScLai~~~~~~~~~~~~~~s~~laVG~w~d~tv~IlsL~---~Le~v~~~~L~~~~~ 403 (1225)
+.+....... +. ..+.++++++- .+++++....+++|.+|.+. .++.+...... ...
T Consensus 220 ~g~~~~~~~~~~~~~~~~~~~~~~~i~~spd-----------G~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~-~~~ 287 (347)
T 3hfq_A 220 TGAFTQLGIVKTIPADYTAHNGAAAIRLSHD-----------GHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTE-GDF 287 (347)
T ss_dssp TTEEEEEEEEESSCTTCCSCCEEEEEEECTT-----------SCEEEEEEETTTEEEEEEECGGGCEEEEEEEECS-SSC
T ss_pred CCceEEeeeeeecCCCCCCCCcceeEEECCC-----------CCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecC-CCC
Confidence 3444433221 21 34667777652 45777777668999999996 33433332221 235
Q ss_pred cccEEEEeeCCeeEEEEEEC-CCcEEEEEEcCCCCccccc
Q psy7977 404 PRSILMTCFEGHCYLLVALG-DGSMFYFSLDPASGRLTDK 442 (1225)
Q Consensus 404 P~SIll~~l~~~~~LlVGl~-nG~L~~y~ld~~sg~Ls~~ 442 (1225)
|.++.+.. +..+|+++-. +|.+..|.++..+|++...
T Consensus 288 ~~~~~~sp--dg~~l~v~~~~~~~v~v~~~d~~tg~l~~~ 325 (347)
T 3hfq_A 288 PRDFDLDP--TEAFVVVVNQNTDNATLYARDLTSGKLSLL 325 (347)
T ss_dssp CCEEEECT--TSSEEEEEETTTTEEEEEEECTTTCCEEEE
T ss_pred cCeEEECC--CCCEEEEEEcCCCcEEEEEEeCCCCeEEec
Confidence 77776642 3457777765 4889999999888877543
No 45
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=96.46 E-value=0.58 Score=53.24 Aligned_cols=219 Identities=11% Similarity=0.115 Sum_probs=113.5
Q ss_pred EEEecCCEEEEE----ECCeEEEEEeecc-cee-EEee-eccCceeEEEEeccCCCCCCCCccccCcEEEEEEecCCeEE
Q psy7977 311 VVSCNKNQVLCA----TGCDVYYLEVHGS-EIK-QLAH-RALEYEVACLDISPLSNEETSSEPAKAQLAAVGLWTDISAR 383 (1225)
Q Consensus 311 ~As~n~~~VlVa----sgg~Lv~feid~~-~L~-ev~~-~~l~~eIScLai~~~~~~~~~~~~~~s~~laVG~w~d~tv~ 383 (1225)
.++++..++.+. .++.|.+++++.. .+. .+.. ..-...|.|++..+. ...+++.|.. |++|+
T Consensus 39 ~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~----------~~~~l~s~s~-dg~v~ 107 (402)
T 2aq5_A 39 FCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPH----------NDNVIASGSE-DCTVM 107 (402)
T ss_dssp SEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTT----------CTTEEEEEET-TSEEE
T ss_pred cEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCC----------CCCEEEEEeC-CCeEE
Confidence 356666666553 3688988887543 221 1111 123567899998762 2568888887 99999
Q ss_pred EEeCCCcc-------eEEeecCCCCCCcccEEEEeeC-C-eeEEEEEECCCcEEEEEEcCCCCccccceeeee----cCc
Q psy7977 384 LLSLPSLE-------EVCKEPLGGEIIPRSILMTCFE-G-HCYLLVALGDGSMFYFSLDPASGRLTDKKKVTL----GTQ 450 (1225)
Q Consensus 384 IlsL~~Le-------~v~~~~L~~~~~P~SIll~~l~-~-~~~LlVGl~nG~L~~y~ld~~sg~Ls~~k~~~L----G~~ 450 (1225)
||++++.. .+.. +. .....+.-+.+. . ..+|+.|..||.+..|.+.. ++. ...+ ...
T Consensus 108 vw~~~~~~~~~~~~~~~~~--~~--~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~--~~~----~~~~~~~~~~~ 177 (402)
T 2aq5_A 108 VWEIPDGGLVLPLREPVIT--LE--GHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGT--GAA----VLTLGPDVHPD 177 (402)
T ss_dssp EEECCTTCCSSCBCSCSEE--EE--CCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTT--TEE----EEEECTTTCCS
T ss_pred EEEccCCCCccccCCceEE--ec--CCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCC--CCc----cEEEecCCCCC
Confidence 99997532 1111 11 011223223332 2 35889999999999988653 221 1222 122
Q ss_pred cceEEEEeeCCceEEEEecCCcEEEEEc-CCeeEEee-cccccc-cccccCCCCCCCCeEEEE-----eCCeEEEEEEcC
Q psy7977 451 PTVLKTFRSLSTTNVFACSDRPTVIYSS-NHKLVFSN-VNLRQV-NHMCSLNAESYPDSLALA-----TDSTFTFGTIDE 522 (1225)
Q Consensus 451 pV~L~~~~~~g~~~Vfa~sdrP~liyss-~g~l~~~p-l~~~~v-~~~s~F~se~~p~glv~v-----s~~~LrI~~i~~ 522 (1225)
++.-..+..+|..-+.+..+....++.- .++....- ...... .....|+.. +.++++ .++.+++..+..
T Consensus 178 ~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~g~~~~~d~~i~iwd~~~ 254 (402)
T 2aq5_A 178 TIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSE---GKILTTGFSRMSERQVALWDTKH 254 (402)
T ss_dssp CEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECST---TEEEEEEECTTCCEEEEEEETTB
T ss_pred ceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCC---CcEEEEeccCCCCceEEEEcCcc
Confidence 3332222222322222222333444442 23222111 111110 111123211 223333 246788887765
Q ss_pred CCC-eeeEEEeCCCcccEEEEecCCCEEEEEE
Q psy7977 523 IQK-LHIRTVPLGEAPRRIAYQESSQTFGVIT 553 (1225)
Q Consensus 523 ~~~-l~ir~IpLg~TprrIay~p~s~~~vV~t 553 (1225)
... .....++-...+..++|+|..+.++++.
T Consensus 255 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g 286 (402)
T 2aq5_A 255 LEEPLSLQELDTSSGVLLPFFDPDTNIVYLCG 286 (402)
T ss_dssp CSSCSEEEECCCCSSCEEEEEETTTTEEEEEE
T ss_pred ccCCceEEeccCCCceeEEEEcCCCCEEEEEE
Confidence 443 4455555667899999999999887765
No 46
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=96.40 E-value=1.6 Score=48.20 Aligned_cols=220 Identities=13% Similarity=0.180 Sum_probs=114.9
Q ss_pred CCEEEEE-E---CCeEEEEEeeccceeEEee-eccCceeEEEEeccCCCCCCCCccccCcEEEEEEecCCeEEEEeCC--
Q psy7977 316 KNQVLCA-T---GCDVYYLEVHGSEIKQLAH-RALEYEVACLDISPLSNEETSSEPAKAQLAAVGLWTDISARLLSLP-- 388 (1225)
Q Consensus 316 ~~~VlVa-s---gg~Lv~feid~~~L~ev~~-~~l~~eIScLai~~~~~~~~~~~~~~s~~laVG~w~d~tv~IlsL~-- 388 (1225)
+..++++ . ++.|..++++.+.+..+.. ......+.++++.+- .++++++.+.++++.+|.+.
T Consensus 50 dg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spd-----------g~~l~~~~~~~~~v~v~~~~~~ 118 (347)
T 3hfq_A 50 KDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEA-----------RQLVYSANYHKGTAEVMKIAAD 118 (347)
T ss_dssp TCEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETT-----------TTEEEEEETTTTEEEEEEECTT
T ss_pred CCeEEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCC-----------CCEEEEEeCCCCEEEEEEeCCC
Confidence 4444444 3 3678888887665555443 223456778887652 45788888668999999995
Q ss_pred -CcceEEeecCCCC--------CCcccEEEEeeCCeeEEEEEECCCcEEEEEEcCCCCccccceeee--ecCccceEEEE
Q psy7977 389 -SLEEVCKEPLGGE--------IIPRSILMTCFEGHCYLLVALGDGSMFYFSLDPASGRLTDKKKVT--LGTQPTVLKTF 457 (1225)
Q Consensus 389 -~Le~v~~~~L~~~--------~~P~SIll~~l~~~~~LlVGl~nG~L~~y~ld~~sg~Ls~~k~~~--LG~~pV~L~~~ 457 (1225)
.+..+........ ..|.++.+.. .+. .+.....++.+..|.++. +|++....... .|..|.. ..+
T Consensus 119 g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~sp-dg~-l~v~~~~~~~v~~~~~~~-~g~~~~~~~~~~~~g~~p~~-~~~ 194 (347)
T 3hfq_A 119 GALTLTDTVQHSGHGPRPEQDGSHIHYTDLTP-DNR-LAVIDLGSDKVYVYNVSD-AGQLSEQSVLTMEAGFGPRH-LVF 194 (347)
T ss_dssp SCEEEEEEEECCCCCSSTTCSSCCEEEEEECT-TSC-EEEEETTTTEEEEEEECT-TSCEEEEEEEECCTTCCEEE-EEE
T ss_pred CCeeecceeecCCCCCCccccCCCceEEEECC-CCc-EEEEeCCCCEEEEEEECC-CCcEEEeeeEEcCCCCCCce-EEE
Confidence 3444333222111 1233444432 234 455666788898898873 35543322111 2333322 223
Q ss_pred eeCCceEEEEecC--CcEEEEE-c--CCeeEEee-cccccc-----cccccCCCCCCCCe-EEEE--e-CCeEEEEEEcC
Q psy7977 458 RSLSTTNVFACSD--RPTVIYS-S--NHKLVFSN-VNLRQV-----NHMCSLNAESYPDS-LALA--T-DSTFTFGTIDE 522 (1225)
Q Consensus 458 ~~~g~~~Vfa~sd--rP~liys-s--~g~l~~~p-l~~~~v-----~~~s~F~se~~p~g-lv~v--s-~~~LrI~~i~~ 522 (1225)
..+| ..+++++. .-..+|. . .+++.... +...+. .....+ .-.|+| .+++ . ++.+.+..++.
T Consensus 195 spdg-~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i--~~spdG~~l~v~~~~~~~v~v~~~~~ 271 (347)
T 3hfq_A 195 SPDG-QYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAI--RLSHDGHFLYVSNRGYNTLAVFAVTA 271 (347)
T ss_dssp CTTS-SEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEE--EECTTSCEEEEEEETTTEEEEEEECG
T ss_pred CCCC-CEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeE--EECCCCCEEEEEeCCCCEEEEEEECC
Confidence 2233 33444332 2222332 1 24432211 111000 000000 112333 3443 2 47899999875
Q ss_pred CCC-eeeEEEeC-CCcccEEEEecCCCEEEEEE
Q psy7977 523 IQK-LHIRTVPL-GEAPRRIAYQESSQTFGVIT 553 (1225)
Q Consensus 523 ~~~-l~ir~IpL-g~TprrIay~p~s~~~vV~t 553 (1225)
... -.+..++. +..|+.++++|..+.++++.
T Consensus 272 ~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~ 304 (347)
T 3hfq_A 272 DGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVN 304 (347)
T ss_dssp GGCEEEEEEEECSSSCCCEEEECTTSSEEEEEE
T ss_pred CCcEEEeEEEecCCCCcCeEEECCCCCEEEEEE
Confidence 433 35566777 56799999999999888776
No 47
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=96.38 E-value=1.7 Score=48.32 Aligned_cols=185 Identities=12% Similarity=0.085 Sum_probs=95.0
Q ss_pred CceeEEEEeccCCCCCCCCccccCcEEEEEEecCCeEEEEeCCCcceEEeecCCCCCCcccEEEEee-CCeeEEEEEECC
Q psy7977 346 EYEVACLDISPLSNEETSSEPAKAQLAAVGLWTDISARLLSLPSLEEVCKEPLGGEIIPRSILMTCF-EGHCYLLVALGD 424 (1225)
Q Consensus 346 ~~eIScLai~~~~~~~~~~~~~~s~~laVG~w~d~tv~IlsL~~Le~v~~~~L~~~~~P~SIll~~l-~~~~~LlVGl~n 424 (1225)
...|.|++..+ ...+++.|.. |++|+||++.+.+.+....... ..+.-+.+ +...+|..|..|
T Consensus 55 ~~~v~~~~~s~-----------d~~~l~s~s~-Dg~v~iWd~~~~~~~~~~~~~~----~~v~~~~~s~~~~~l~s~~~d 118 (340)
T 1got_B 55 LAKIYAMHWGT-----------DSRLLLSASQ-DGKLIIWDSYTTNKVHAIPLRS----SWVMTCAYAPSGNYVACGGLD 118 (340)
T ss_dssp SSCEEEEEECT-----------TSSEEEEEET-TTEEEEEETTTCCEEEEEECSS----SCEEEEEECTTSSEEEEEETT
T ss_pred CCceEEEEECC-----------CCCEEEEEeC-CCcEEEEECCCCCcceEeecCC----ccEEEEEECCCCCEEEEEeCC
Confidence 46788998865 2467888887 9999999998765554433221 11222223 346789999999
Q ss_pred CcEEEEEEcCCCCccccceeeeec-CccceEEEEeeCCceEEEEecCCcEEEEEc-CCeeEEe-ecccccccccccCCCC
Q psy7977 425 GSMFYFSLDPASGRLTDKKKVTLG-TQPTVLKTFRSLSTTNVFACSDRPTVIYSS-NHKLVFS-NVNLRQVNHMCSLNAE 501 (1225)
Q Consensus 425 G~L~~y~ld~~sg~Ls~~k~~~LG-~~pV~L~~~~~~g~~~Vfa~sdrP~liyss-~g~l~~~-pl~~~~v~~~s~F~se 501 (1225)
|.+..|.+....+.....+ ...| ..++.-..+...+ .-+.+.++....++.- .+..... .-....+.++ .|+.
T Consensus 119 ~~v~iw~~~~~~~~~~~~~-~~~~h~~~v~~~~~~~~~-~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~-~~~~- 194 (340)
T 1got_B 119 NICSIYNLKTREGNVRVSR-ELAGHTGYLSCCRFLDDN-QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSL-SLAP- 194 (340)
T ss_dssp CEEEEEETTTCSBSCEEEE-EEECCSSCEEEEEEEETT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEE-EECT-
T ss_pred CeEEEEECccCCCcceeEE-EecCCCccEEEEEECCCC-cEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEE-EECC-
Confidence 9999998764322221111 1112 2233333333222 2222223344444432 2222111 1011122222 1221
Q ss_pred CCCCeEEEE-eCCeEEEEEEcCCCCeeeEEEeC-CCcccEEEEecCCCEEEEEE
Q psy7977 502 SYPDSLALA-TDSTFTFGTIDEIQKLHIRTVPL-GEAPRRIAYQESSQTFGVIT 553 (1225)
Q Consensus 502 ~~p~glv~v-s~~~LrI~~i~~~~~l~ir~IpL-g~TprrIay~p~s~~~vV~t 553 (1225)
....++.. .++.+++-.+... -..+++.- ...++.++++|..+.++.+.
T Consensus 195 -~~~~l~sg~~d~~v~~wd~~~~--~~~~~~~~h~~~v~~v~~~p~~~~l~s~s 245 (340)
T 1got_B 195 -DTRLFVSGACDASAKLWDVREG--MCRQTFTGHESDINAICFFPNGNAFATGS 245 (340)
T ss_dssp -TSSEEEEEETTSCEEEEETTTC--SEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred -CCCEEEEEeCCCcEEEEECCCC--eeEEEEcCCcCCEEEEEEcCCCCEEEEEc
Confidence 11223333 3567888776542 22333332 34678899999888877775
No 48
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=96.37 E-value=1.8 Score=48.44 Aligned_cols=245 Identities=12% Similarity=0.060 Sum_probs=128.3
Q ss_pred eEEEeeeeccccceeeEEeeccccCCccEEEEEecCCCccEEEEee----ccee-----eEEEEee--CCC-------cc
Q psy7977 158 VSVMESFTNLAPIIDMVVVDLERQGQGQLVTCSGGFKEGSLRIIRN----GIGI-----EEHACID--LPG-------IK 219 (1225)
Q Consensus 158 l~v~d~l~NlgPI~D~~v~d~~~~~~~qLva~sG~g~~GsLrilR~----GI~~-----~~~~s~e--Lpg-------v~ 219 (1225)
...+......+||..+++... + ..++++++ .+|.+++..- .-+- .....+. +++ -.
T Consensus 36 ~~~~~~~~~~~~v~~~~~s~~---~-~~~l~~~~--~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (425)
T 1r5m_A 36 VKILKEIVKLDNIVSSTWNPL---D-ESILAYGE--KNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTN 109 (425)
T ss_dssp CEECEEEEECSCCSEEEECSS---C-TTEEEEEE--TBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CB
T ss_pred hhheeeeeccCceEEEEECCC---C-CcEEEEec--CCceEEEEEEecccCCccccccccccccccccccccccccCCCC
Confidence 455666677789998887542 1 22454443 4678888765 2111 0222222 221 12
Q ss_pred eEeEeeeCCCCCCccEEEEEcCCceE-EEEEcCceeeeeccCCcccccCeEEEEee-CCC-eEEEEc-cCcEEEEecCCc
Q psy7977 220 GIWALSIGSPKNLDNTLVLSFVGHTR-VLTLSGAEVEETEMGGFTSDQQTFYCGNV-DPR-TVLQVT-PSAAILISTESK 295 (1225)
Q Consensus 220 ~iWtl~~~~~~~~d~yLVlSf~~~T~-Vl~i~ge~veEv~~sgF~~~~~TL~ag~l-~~~-~iVQVT-~~~IRli~~~~~ 295 (1225)
.+..+.... ...+|+....+.+. ++..+++.+..... ....+.+-.+ .++ .++=.. ...|++++...+
T Consensus 110 ~v~~~~~s~---~~~~l~~~~~dg~i~i~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 181 (425)
T 1r5m_A 110 QVTCLAWSH---DGNSIVTGVENGELRLWNKTGALLNVLNF-----HRAPIVSVKWNKDGTHIISMDVENVTILWNVISG 181 (425)
T ss_dssp CEEEEEECT---TSSEEEEEETTSCEEEEETTSCEEEEECC-----CCSCEEEEEECTTSSEEEEEETTCCEEEEETTTT
T ss_pred ceEEEEEcC---CCCEEEEEeCCCeEEEEeCCCCeeeeccC-----CCccEEEEEECCCCCEEEEEecCCeEEEEECCCC
Confidence 566666543 34677776655543 55433333333221 1111222222 122 222222 345777776655
Q ss_pred ceeeeecCCCCC--------------cEEEEEe-cCCEEEEE-ECCeEEEEEeeccceeEEeeeccCceeEEEEeccCCC
Q psy7977 296 ARVSSWEPPNGK--------------SISVVSC-NKNQVLCA-TGCDVYYLEVHGSEIKQLAHRALEYEVACLDISPLSN 359 (1225)
Q Consensus 296 ~~i~eW~~p~g~--------------~Iv~As~-n~~~VlVa-sgg~Lv~feid~~~L~ev~~~~l~~eIScLai~~~~~ 359 (1225)
+.+..+..+... .+...+. .+..++++ .++.|.++++........ .......|.|+++.+.
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~-~~~~~~~i~~~~~~~~-- 258 (425)
T 1r5m_A 182 TVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGK-LIGHHGPISVLEFNDT-- 258 (425)
T ss_dssp EEEEEECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEE-ECCCSSCEEEEEEETT--
T ss_pred cEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeee-eccCCCceEEEEECCC--
Confidence 555554433221 1333333 35565555 678898888775432211 1123567889988752
Q ss_pred CCCCCccccCcEEEEEEecCCeEEEEeCCCcceEEeecCCCCCCcccEEEEeeCCeeEEEEEECCCcEEEEEEc
Q psy7977 360 EETSSEPAKAQLAAVGLWTDISARLLSLPSLEEVCKEPLGGEIIPRSILMTCFEGHCYLLVALGDGSMFYFSLD 433 (1225)
Q Consensus 360 ~~~~~~~~~s~~laVG~w~d~tv~IlsL~~Le~v~~~~L~~~~~P~SIll~~l~~~~~LlVGl~nG~L~~y~ld 433 (1225)
..++++|.. |+.|++|++.+.+.+....-. .....++.+. +.. +|+.+..+|.+..|.+.
T Consensus 259 ---------~~~l~~~~~-d~~i~i~d~~~~~~~~~~~~~-~~~i~~~~~~--~~~-~l~~~~~d~~i~i~d~~ 318 (425)
T 1r5m_A 259 ---------NKLLLSASD-DGTLRIWHGGNGNSQNCFYGH-SQSIVSASWV--GDD-KVISCSMDGSVRLWSLK 318 (425)
T ss_dssp ---------TTEEEEEET-TSCEEEECSSSBSCSEEECCC-SSCEEEEEEE--TTT-EEEEEETTSEEEEEETT
T ss_pred ---------CCEEEEEcC-CCEEEEEECCCCccceEecCC-CccEEEEEEC--CCC-EEEEEeCCCcEEEEECC
Confidence 457888887 999999999865443322111 1122334333 233 89999999999988765
No 49
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=96.33 E-value=0.33 Score=54.87 Aligned_cols=251 Identities=13% Similarity=0.054 Sum_probs=131.2
Q ss_pred EeeeeccccceeeEEeeccccCCccEEEEEecCCCccEEEEeecc---eeeEEEEeeCCCcceEeEeeeCCCCCCccEEE
Q psy7977 161 MESFTNLAPIIDMVVVDLERQGQGQLVTCSGGFKEGSLRIIRNGI---GIEEHACIDLPGIKGIWALSIGSPKNLDNTLV 237 (1225)
Q Consensus 161 ~d~l~NlgPI~D~~v~d~~~~~~~qLva~sG~g~~GsLrilR~GI---~~~~~~s~eLpgv~~iWtl~~~~~~~~d~yLV 237 (1225)
+..+..-++|.++++.. ..+++++++ .+|.+++..-.- +...+..+. ..-..++.+..... ...+|+
T Consensus 61 ~~~~~~~~~v~~~~~s~-----~~~~l~~~~--~dg~v~vw~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~--~~~~l~ 130 (416)
T 2pm9_A 61 IASLQVDSKFNDLDWSH-----NNKIIAGAL--DNGSLELYSTNEANNAINSMARFS-NHSSSVKTVKFNAK--QDNVLA 130 (416)
T ss_dssp SCCCCCSSCEEEEEECS-----SSSCEEEEE--SSSCEEEECCSSTTSCCCEEEECC-CSSSCCCEEEECSS--STTBEE
T ss_pred EEEEecCCceEEEEECC-----CCCeEEEEc--cCCeEEEeecccccccccchhhcc-CCccceEEEEEcCC--CCCEEE
Confidence 33445567888887743 223343333 368888887654 122222222 12234555554321 134666
Q ss_pred EEcCCceE-EEEEcCcee-----eeeccCCcccccCeEEEEee-CC--CeEEEEc-cCcEEEEecCCcceeeeecCCC--
Q psy7977 238 LSFVGHTR-VLTLSGAEV-----EETEMGGFTSDQQTFYCGNV-DP--RTVLQVT-PSAAILISTESKARVSSWEPPN-- 305 (1225)
Q Consensus 238 lSf~~~T~-Vl~i~ge~v-----eEv~~sgF~~~~~TL~ag~l-~~--~~iVQVT-~~~IRli~~~~~~~i~eW~~p~-- 305 (1225)
....+.+. ++.+....- .......+......+.+-.+ .+ ..++=.. ...|++++...++.+..+..+.
T Consensus 131 s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~ 210 (416)
T 2pm9_A 131 SGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPN 210 (416)
T ss_dssp EECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCS
T ss_pred EEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccc
Confidence 65555443 443321110 01111011111112222222 22 2333333 3448888877666666665442
Q ss_pred ---CCcEEEEEecCC---EEEEE-ECC---eEEEEEeeccc-eeEEeeeccCceeEEEEeccCCCCCCCCccccCcEEEE
Q psy7977 306 ---GKSISVVSCNKN---QVLCA-TGC---DVYYLEVHGSE-IKQLAHRALEYEVACLDISPLSNEETSSEPAKAQLAAV 374 (1225)
Q Consensus 306 ---g~~Iv~As~n~~---~VlVa-sgg---~Lv~feid~~~-L~ev~~~~l~~eIScLai~~~~~~~~~~~~~~s~~laV 374 (1225)
...|.+.+.+.. +++.+ .++ .|.++++.... ....-.......|.|++..+. ...+++.
T Consensus 211 ~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~----------~~~~l~s 280 (416)
T 2pm9_A 211 SGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQ----------DEHLLLS 280 (416)
T ss_dssp SCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSS----------CSSCEEE
T ss_pred cccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCC----------CCCeEEE
Confidence 456888877642 44444 455 88888876532 111111023567889988652 2467888
Q ss_pred EEecCCeEEEEeCCCcceEEeecCCCCCCcccEEEEeeCCeeEEEEEECCCcEEEEEEcC
Q psy7977 375 GLWTDISARLLSLPSLEEVCKEPLGGEIIPRSILMTCFEGHCYLLVALGDGSMFYFSLDP 434 (1225)
Q Consensus 375 G~w~d~tv~IlsL~~Le~v~~~~L~~~~~P~SIll~~l~~~~~LlVGl~nG~L~~y~ld~ 434 (1225)
|.. |++|++|++.+.+.+....-. .....++.+..- +..+|+.+..||.+..|.+..
T Consensus 281 ~~~-dg~v~~wd~~~~~~~~~~~~~-~~~v~~~~~s~~-~~~~l~s~~~d~~i~iw~~~~ 337 (416)
T 2pm9_A 281 SGR-DNTVLLWNPESAEQLSQFPAR-GNWCFKTKFAPE-APDLFACASFDNKIEVQTLQN 337 (416)
T ss_dssp EES-SSEEEEECSSSCCEEEEEECS-SSCCCCEEECTT-CTTEEEECCSSSEEEEEESCC
T ss_pred EeC-CCCEEEeeCCCCccceeecCC-CCceEEEEECCC-CCCEEEEEecCCcEEEEEccC
Confidence 887 999999999876655432211 122334544321 225788999999999998864
No 50
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=96.29 E-value=1.8 Score=47.46 Aligned_cols=134 Identities=11% Similarity=0.114 Sum_probs=81.7
Q ss_pred cEEEEecCCcceeeeecCCCCCcEEEEEec--CCEEEEE-ECCeEEEEEeeccceeEEeeeccCceeEEEEeccCCCCCC
Q psy7977 286 AAILISTESKARVSSWEPPNGKSISVVSCN--KNQVLCA-TGCDVYYLEVHGSEIKQLAHRALEYEVACLDISPLSNEET 362 (1225)
Q Consensus 286 ~IRli~~~~~~~i~eW~~p~g~~Iv~As~n--~~~VlVa-sgg~Lv~feid~~~L~ev~~~~l~~eIScLai~~~~~~~~ 362 (1225)
.|++++...++.+..+... ...|.+.+.. +.+++.+ .++.|.++++..++... .......+.|+++.+.
T Consensus 55 ~i~vwd~~~~~~~~~~~~h-~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~--~~~~~~~v~~~~~~~~----- 126 (369)
T 3zwl_B 55 SASVWYSLNGERLGTLDGH-TGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVA--TWKSPVPVKRVEFSPC----- 126 (369)
T ss_dssp CEEEEETTTCCEEEEECCC-SSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEE--EEECSSCEEEEEECTT-----
T ss_pred EEEEEeCCCchhhhhhhhc-CCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEE--EeecCCCeEEEEEccC-----
Confidence 4677776655566665532 3457777776 4566665 57899999887554322 2336678899988652
Q ss_pred CCccccCcEEEEEEecC-----CeEEEEeCCCcc---eEEee---cC---CCCCCcccEEEEee-CCeeEEEEEECCCcE
Q psy7977 363 SSEPAKAQLAAVGLWTD-----ISARLLSLPSLE---EVCKE---PL---GGEIIPRSILMTCF-EGHCYLLVALGDGSM 427 (1225)
Q Consensus 363 ~~~~~~s~~laVG~w~d-----~tv~IlsL~~Le---~v~~~---~L---~~~~~P~SIll~~l-~~~~~LlVGl~nG~L 427 (1225)
..+++++.. + +.+++|++.... .+... .+ ....-...+.-..+ ....+|++|..+|.+
T Consensus 127 ------~~~l~~~~~-~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i 199 (369)
T 3zwl_B 127 ------GNYFLAILD-NVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKI 199 (369)
T ss_dssp ------SSEEEEEEC-CBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEE
T ss_pred ------CCEEEEecC-CccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEE
Confidence 467888876 7 999999985321 11110 00 00000002222223 245689999999999
Q ss_pred EEEEEcC
Q psy7977 428 FYFSLDP 434 (1225)
Q Consensus 428 ~~y~ld~ 434 (1225)
..|.+..
T Consensus 200 ~i~d~~~ 206 (369)
T 3zwl_B 200 SKYDVSN 206 (369)
T ss_dssp EEEETTT
T ss_pred EEEECCC
Confidence 9998753
No 51
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=96.29 E-value=2.4 Score=49.07 Aligned_cols=70 Identities=14% Similarity=0.112 Sum_probs=44.7
Q ss_pred eeEEEEeccCCCCCCCCccccCcEE-EEEEecCCeEEEEeCC--CcceEEe---ecCCCCCCcccEEEEeeCCeeEEEEE
Q psy7977 348 EVACLDISPLSNEETSSEPAKAQLA-AVGLWTDISARLLSLP--SLEEVCK---EPLGGEIIPRSILMTCFEGHCYLLVA 421 (1225)
Q Consensus 348 eIScLai~~~~~~~~~~~~~~s~~l-aVG~w~d~tv~IlsL~--~Le~v~~---~~L~~~~~P~SIll~~l~~~~~LlVG 421 (1225)
.|.|+++.+. ..++ +.|.. |++|+||++. +-+.+.. ...+ ..+.++.+. +...+|++|
T Consensus 104 ~v~~~~~s~d-----------~~~l~~~~~~-dg~v~iwd~~~~~~~~~~~~~~~~~~--~~v~~~~~s--p~~~~l~~~ 167 (450)
T 2vdu_B 104 YIRNLRLTSD-----------ESRLIACADS-DKSLLVFDVDKTSKNVLKLRKRFCFS--KRPNAISIA--EDDTTVIIA 167 (450)
T ss_dssp CEEEEEECTT-----------SSEEEEEEGG-GTEEEEEEECSSSSSCEEEEEEEECS--SCEEEEEEC--TTSSEEEEE
T ss_pred ceEEEEEcCC-----------CCEEEEEECC-CCeEEEEECcCCCCceeeeeecccCC--CCceEEEEc--CCCCEEEEE
Confidence 5888888652 3455 66665 9999999997 5333222 1221 222333332 245789999
Q ss_pred ECCCcEEEEEEc
Q psy7977 422 LGDGSMFYFSLD 433 (1225)
Q Consensus 422 l~nG~L~~y~ld 433 (1225)
..+|.+..+.+.
T Consensus 168 ~~~g~v~~~~~~ 179 (450)
T 2vdu_B 168 DKFGDVYSIDIN 179 (450)
T ss_dssp ETTSEEEEEETT
T ss_pred eCCCcEEEEecC
Confidence 999999887764
No 52
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=96.27 E-value=1.4 Score=49.32 Aligned_cols=217 Identities=10% Similarity=0.058 Sum_probs=112.8
Q ss_pred cEEEEEec--CCEEEEE-ECCeEEEEEeeccceeEEeeeccCceeEEEEeccCCCCCCCCccccCcEEEEEEecCCeEEE
Q psy7977 308 SISVVSCN--KNQVLCA-TGCDVYYLEVHGSEIKQLAHRALEYEVACLDISPLSNEETSSEPAKAQLAAVGLWTDISARL 384 (1225)
Q Consensus 308 ~Iv~As~n--~~~VlVa-sgg~Lv~feid~~~L~ev~~~~l~~eIScLai~~~~~~~~~~~~~~s~~laVG~w~d~tv~I 384 (1225)
.|.+.+.. +.+++.+ .++.|.+++.+...+... ......|.|++..+. ..+++.+.. |+++++
T Consensus 110 ~v~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~--~~~~~~v~~~~~~~~-----------~~~l~~~~~-d~~i~i 175 (425)
T 1r5m_A 110 QVTCLAWSHDGNSIVTGVENGELRLWNKTGALLNVL--NFHRAPIVSVKWNKD-----------GTHIISMDV-ENVTIL 175 (425)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEE--CCCCSCEEEEEECTT-----------SSEEEEEET-TCCEEE
T ss_pred ceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeec--cCCCccEEEEEECCC-----------CCEEEEEec-CCeEEE
Confidence 67777775 4566666 578888887322122221 223567889988652 457888876 999999
Q ss_pred EeCCCcceEEeecCCCCC--------------CcccEEEEeeCCeeEEEEEECCCcEEEEEEcCCCCccccceeeeecCc
Q psy7977 385 LSLPSLEEVCKEPLGGEI--------------IPRSILMTCFEGHCYLLVALGDGSMFYFSLDPASGRLTDKKKVTLGTQ 450 (1225)
Q Consensus 385 lsL~~Le~v~~~~L~~~~--------------~P~SIll~~l~~~~~LlVGl~nG~L~~y~ld~~sg~Ls~~k~~~LG~~ 450 (1225)
|++.+.+.+......... ...++.+.. ...++++..+|.+..|.+.. ++.. +.......
T Consensus 176 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~g~i~~~d~~~--~~~~--~~~~~~~~ 248 (425)
T 1r5m_A 176 WNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVD---DDKFVIPGPKGAIFVYQITE--KTPT--GKLIGHHG 248 (425)
T ss_dssp EETTTTEEEEEECCC---------------CCCBSCCEEEE---TTEEEEECGGGCEEEEETTC--SSCS--EEECCCSS
T ss_pred EECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcC---CCEEEEEcCCCeEEEEEcCC--Ccee--eeeccCCC
Confidence 999875554432221100 033444432 34588999999999988753 2111 11111123
Q ss_pred cceEEEEeeCCceEEEEec-CCcEEEEEc-CCe-eEEeecccccccccccCCCCCCCCeEEE-E-eCCeEEEEEEcCCCC
Q psy7977 451 PTVLKTFRSLSTTNVFACS-DRPTVIYSS-NHK-LVFSNVNLRQVNHMCSLNAESYPDSLAL-A-TDSTFTFGTIDEIQK 525 (1225)
Q Consensus 451 pV~L~~~~~~g~~~Vfa~s-drP~liyss-~g~-l~~~pl~~~~v~~~s~F~se~~p~glv~-v-s~~~LrI~~i~~~~~ 525 (1225)
++.-..+...+ ..+++.+ +.-..+|.- .++ .....-....+.++ .|+ |+++++ . .++.+++..+...
T Consensus 249 ~i~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~-~~~----~~~~l~~~~~d~~i~i~d~~~~-- 320 (425)
T 1r5m_A 249 PISVLEFNDTN-KLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSA-SWV----GDDKVISCSMDGSVRLWSLKQN-- 320 (425)
T ss_dssp CEEEEEEETTT-TEEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEE-EEE----TTTEEEEEETTSEEEEEETTTT--
T ss_pred ceEEEEECCCC-CEEEEEcCCCEEEEEECCCCccceEecCCCccEEEE-EEC----CCCEEEEEeCCCcEEEEECCCC--
Confidence 33322332222 2222222 222333321 111 11111111112111 121 233333 3 3467888776542
Q ss_pred eeeEEEeC-CCcccEEEEecCCCEEEEEE
Q psy7977 526 LHIRTVPL-GEAPRRIAYQESSQTFGVIT 553 (1225)
Q Consensus 526 l~ir~IpL-g~TprrIay~p~s~~~vV~t 553 (1225)
-.+..+.. ...+..++++|..+.+++++
T Consensus 321 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~ 349 (425)
T 1r5m_A 321 TLLALSIVDGVPIFAGRISQDGQKYAVAF 349 (425)
T ss_dssp EEEEEEECTTCCEEEEEECTTSSEEEEEE
T ss_pred cEeEecccCCccEEEEEEcCCCCEEEEEE
Confidence 23444444 56789999999999888876
No 53
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=96.23 E-value=0.87 Score=49.89 Aligned_cols=235 Identities=11% Similarity=0.079 Sum_probs=117.5
Q ss_pred CcEEEEEecC--CEEEEEE-----CCeEEEEEeeccceeEEeeeccCceeEEEEeccCCCCCCCCccccCcEEEEEEecC
Q psy7977 307 KSISVVSCNK--NQVLCAT-----GCDVYYLEVHGSEIKQLAHRALEYEVACLDISPLSNEETSSEPAKAQLAAVGLWTD 379 (1225)
Q Consensus 307 ~~Iv~As~n~--~~VlVas-----gg~Lv~feid~~~L~ev~~~~l~~eIScLai~~~~~~~~~~~~~~s~~laVG~w~d 379 (1225)
..|.+.+.+. ++++++. ++.|.+++++.+++.......-...|.|++..+... ...+++.|.. |
T Consensus 19 ~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--------~~~~l~~~~~-d 89 (357)
T 3i2n_A 19 YTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSL--------QQRYLATGDF-G 89 (357)
T ss_dssp SCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCT--------TTCCEEEEET-T
T ss_pred CceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCC--------CCceEEEecC-C
Confidence 3566666653 3455442 678888888866554443334467899999876310 1467888887 9
Q ss_pred CeEEEEeCCCcc-eEEeecCCCCCCcccEEEEe---e-CCeeEEEEEECCCcEEEEEEcCCCCccccceeeeec--Cccc
Q psy7977 380 ISARLLSLPSLE-EVCKEPLGGEIIPRSILMTC---F-EGHCYLLVALGDGSMFYFSLDPASGRLTDKKKVTLG--TQPT 452 (1225)
Q Consensus 380 ~tv~IlsL~~Le-~v~~~~L~~~~~P~SIll~~---l-~~~~~LlVGl~nG~L~~y~ld~~sg~Ls~~k~~~LG--~~pV 452 (1225)
++|++|++.+.+ .+....-. .....++.... + ....+|+.|..||.+..|.+......+.. -...-| ..++
T Consensus 90 g~i~iwd~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~-~~~~~~~~~~~v 167 (357)
T 3i2n_A 90 GNLHIWNLEAPEMPVYSVKGH-KEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVAN-MEPVQGENKRDC 167 (357)
T ss_dssp SCEEEECTTSCSSCSEEECCC-SSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEE-ECCCTTSCCCCE
T ss_pred CeEEEEeCCCCCccEEEEEec-ccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCccee-ccccCCCCCCce
Confidence 999999997644 22221110 11122332221 1 24568999999999998876532111100 000011 1122
Q ss_pred eEEEEe--e-CCceEEEEecC-CcEEEEEc-CCeeEEeecccccccccccCCCCC-CCCeEEEEe-CCeEEEEEEcCCC-
Q psy7977 453 VLKTFR--S-LSTTNVFACSD-RPTVIYSS-NHKLVFSNVNLRQVNHMCSLNAES-YPDSLALAT-DSTFTFGTIDEIQ- 524 (1225)
Q Consensus 453 ~L~~~~--~-~g~~~Vfa~sd-rP~liyss-~g~l~~~pl~~~~v~~~s~F~se~-~p~glv~vs-~~~LrI~~i~~~~- 524 (1225)
.-..+. . .....+++.++ .-..+|.- .++.....-....+.++ .|+... .++.++... ++.+++..+....
T Consensus 168 ~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~-~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 246 (357)
T 3i2n_A 168 WTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSL-EFDRKDISMNKLVATSLEGKFHVFDMRTQHP 246 (357)
T ss_dssp EEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEE-EESCSSSSCCEEEEEESTTEEEEEEEEEEET
T ss_pred EEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeeecCCCCceEEE-EcCCCCCCCCEEEEECCCCeEEEEeCcCCCc
Confidence 222211 1 12223333333 23334432 23332221112223222 222111 223444443 5788888876542
Q ss_pred --CeeeEEE-eCCCcccEEEEecCCC-EEEEEE
Q psy7977 525 --KLHIRTV-PLGEAPRRIAYQESSQ-TFGVIT 553 (1225)
Q Consensus 525 --~l~ir~I-pLg~TprrIay~p~s~-~~vV~t 553 (1225)
.+..... .-...+..++++|..+ .++.+.
T Consensus 247 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 279 (357)
T 3i2n_A 247 TKGFASVSEKAHKSTVWQVRHLPQNRELFLTAG 279 (357)
T ss_dssp TTEEEEEEEECCSSCEEEEEEETTEEEEEEEEE
T ss_pred ccceeeeccCCCcCCEEEEEECCCCCcEEEEEe
Confidence 2222222 2356788999999888 455554
No 54
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=96.20 E-value=0.43 Score=54.75 Aligned_cols=254 Identities=10% Similarity=0.067 Sum_probs=134.8
Q ss_pred EEEeee-ecc-ccceeeEEeeccccCCccEEEEEecCCCccEEEEeecc-----eeeEEEEeeCCCcceEeEeeeCCCCC
Q psy7977 159 SVMESF-TNL-APIIDMVVVDLERQGQGQLVTCSGGFKEGSLRIIRNGI-----GIEEHACIDLPGIKGIWALSIGSPKN 231 (1225)
Q Consensus 159 ~v~d~l-~Nl-gPI~D~~v~d~~~~~~~qLva~sG~g~~GsLrilR~GI-----~~~~~~s~eLpgv~~iWtl~~~~~~~ 231 (1225)
+.+.++ ... ++|..+++... ..++++++| .+|.+++..-.- ..+...... .-..++.+....
T Consensus 53 ~~~~~~~~~h~~~V~~~~~s~~----~~~~l~s~s--~dg~v~vwd~~~~~~~~~~~~~~~~~--h~~~v~~~~~~~--- 121 (437)
T 3gre_A 53 KLIATLMENEPNSITSSAVSPG----ETPYLITGS--DQGVIKIWNLKEIIVGEVYSSSLTYD--CSSTVTQITMIP--- 121 (437)
T ss_dssp CEEEEECTTTTSCEEEEEEECS----SSCEEEEEE--TTSEEEEEEHHHHHTTCCCSCSEEEE--CSSCEEEEEECT---
T ss_pred eEEeeeccCCCCceEEEEECCC----CCCEEEEec--CCceEEEeECcccccCcccceeeecc--CCCCEEEEEEeC---
Confidence 455666 553 89999887541 123444433 678899876422 111111211 223556666543
Q ss_pred CccEEEEEcCCce-EEEEEc----Cceee-----eeccCCcc---cccCeEEEEee--CCC-eEEEEcc-CcEEEEecCC
Q psy7977 232 LDNTLVLSFVGHT-RVLTLS----GAEVE-----ETEMGGFT---SDQQTFYCGNV--DPR-TVLQVTP-SAAILISTES 294 (1225)
Q Consensus 232 ~d~yLVlSf~~~T-~Vl~i~----ge~ve-----Ev~~sgF~---~~~~TL~ag~l--~~~-~iVQVT~-~~IRli~~~~ 294 (1225)
...+|+....+.+ +++.+. ++.+. .+..-.|. .......+... .++ .++=.+. ..|++++...
T Consensus 122 ~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 201 (437)
T 3gre_A 122 NFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRT 201 (437)
T ss_dssp TSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTT
T ss_pred CCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Confidence 3456666555554 466552 22111 11111111 11222222222 122 3333332 4688888776
Q ss_pred cceeeeecCC-CCCcEEEEEec--CCEEEEE-ECCeEEEEEeeccceeEEeeeccCceeEEEEeccCCCCCCCCccccCc
Q psy7977 295 KARVSSWEPP-NGKSISVVSCN--KNQVLCA-TGCDVYYLEVHGSEIKQLAHRALEYEVACLDISPLSNEETSSEPAKAQ 370 (1225)
Q Consensus 295 ~~~i~eW~~p-~g~~Iv~As~n--~~~VlVa-sgg~Lv~feid~~~L~ev~~~~l~~eIScLai~~~~~~~~~~~~~~s~ 370 (1225)
++.+..+..+ ....|.+.+.. +.+++.+ .++.|.++++..+.....-...-...|.|++..+... ....
T Consensus 202 ~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s-------~~~~ 274 (437)
T 3gre_A 202 LERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYG-------KNSV 274 (437)
T ss_dssp CCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTC-------TTEE
T ss_pred CeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccC-------CCcc
Confidence 6666666543 33468887774 4455555 5788999988754322211112245788998865311 1245
Q ss_pred EEEEEEecCCeEEEEeCCCcceEEeec-----CCC-CC-------------------CcccEEEEeeCCeeEEEEEECCC
Q psy7977 371 LAAVGLWTDISARLLSLPSLEEVCKEP-----LGG-EI-------------------IPRSILMTCFEGHCYLLVALGDG 425 (1225)
Q Consensus 371 ~laVG~w~d~tv~IlsL~~Le~v~~~~-----L~~-~~-------------------~P~SIll~~l~~~~~LlVGl~nG 425 (1225)
+++.|.. |++|+||++.+.+.+..-. ... .. ...++++. +..+|+.|-.||
T Consensus 275 ~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~---~~~~l~s~~~d~ 350 (437)
T 3gre_A 275 IVVGGSS-KTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS---NDKILLTDEATS 350 (437)
T ss_dssp EEEEEST-TEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE---TTEEEEEEGGGT
T ss_pred EEEEEcC-CCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC---CceEEEecCCCC
Confidence 7777876 9999999998644332210 000 00 01234443 347899999999
Q ss_pred cEEEEEEcC
Q psy7977 426 SMFYFSLDP 434 (1225)
Q Consensus 426 ~L~~y~ld~ 434 (1225)
.+..|.+..
T Consensus 351 ~i~~wd~~~ 359 (437)
T 3gre_A 351 SIVMFSLNE 359 (437)
T ss_dssp EEEEEETTC
T ss_pred eEEEEECCC
Confidence 999998753
No 55
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=96.11 E-value=2.4 Score=47.25 Aligned_cols=115 Identities=16% Similarity=0.032 Sum_probs=71.6
Q ss_pred CCcEEEEEec--CC-EEEEE-ECCeEEEEEeeccceeEEeeeccCceeEEEEeccCCCCCCCCccccCcEEEEEEecCCe
Q psy7977 306 GKSISVVSCN--KN-QVLCA-TGCDVYYLEVHGSEIKQLAHRALEYEVACLDISPLSNEETSSEPAKAQLAAVGLWTDIS 381 (1225)
Q Consensus 306 g~~Iv~As~n--~~-~VlVa-sgg~Lv~feid~~~L~ev~~~~l~~eIScLai~~~~~~~~~~~~~~s~~laVG~w~d~t 381 (1225)
...|.+.+.+ +. +++.+ .++.|.++++...+.. ........+.+++..+... ...++++|.. ++.
T Consensus 99 ~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~-~~~ 167 (408)
T 4a11_B 99 RYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTA--DVFNFEETVYSHHMSPVST--------KHCLVAVGTR-GPK 167 (408)
T ss_dssp SSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEE--EEEECSSCEEEEEECSSCS--------SCCEEEEEES-SSS
T ss_pred CCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccc--eeccCCCceeeeEeecCCC--------CCcEEEEEcC-CCe
Confidence 3467777765 33 44445 4789999887754322 2334667788888876532 3457888887 999
Q ss_pred EEEEeCCCcceEEeecCCCCCCcccEEEEeeCCee-EEEEEECCCcEEEEEEcC
Q psy7977 382 ARLLSLPSLEEVCKEPLGGEIIPRSILMTCFEGHC-YLLVALGDGSMFYFSLDP 434 (1225)
Q Consensus 382 v~IlsL~~Le~v~~~~L~~~~~P~SIll~~l~~~~-~LlVGl~nG~L~~y~ld~ 434 (1225)
|++|++...+.+....-. .....++.+. +... .|+.|..||.+..|.+..
T Consensus 168 v~~~d~~~~~~~~~~~~~-~~~v~~~~~~--~~~~~ll~~~~~dg~i~i~d~~~ 218 (408)
T 4a11_B 168 VQLCDLKSGSCSHILQGH-RQEILAVSWS--PRYDYILATASADSRVKLWDVRR 218 (408)
T ss_dssp EEEEESSSSCCCEEECCC-CSCEEEEEEC--SSCTTEEEEEETTSCEEEEETTC
T ss_pred EEEEeCCCcceeeeecCC-CCcEEEEEEC--CCCCcEEEEEcCCCcEEEEECCC
Confidence 999999764433321110 1112233332 2334 478999999999998754
No 56
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=96.06 E-value=0.6 Score=51.25 Aligned_cols=172 Identities=10% Similarity=0.095 Sum_probs=111.3
Q ss_pred EEEEEEECCC-CcEE-EEEECCCCCceEEEEEEEecCCCCeEEEEEeeeeCCCCCCCcceEEEEEEEeCCcEEEEEEEEe
Q psy7977 1005 HNLLIIDQNT-FEIL-HAHQLFPGEYALSLISSKFGEDPNTYFVLGTAVVHPEENEPKQGRIIIFHYDDGKLQQIAEKEI 1082 (1225)
Q Consensus 1005 s~irlvdp~t-~~~i-~~~eL~~nE~~~si~~v~~~~~~~~~lvVGTa~~~~eed~~~~GrI~vf~i~~~kL~lv~~~ev 1082 (1225)
+.|++.|..+ .+.+ ..+. .....+.++ .|.. ...+++.|+ ..|.|.+|++..++... ....
T Consensus 64 g~i~iw~~~~~~~~~~~~~~-~h~~~v~~~---~~~~-~~~~l~s~~----------~dg~v~iwd~~~~~~~~--~~~~ 126 (368)
T 3mmy_A 64 NDVRCWEVQDSGQTIPKAQQ-MHTGPVLDV---CWSD-DGSKVFTAS----------CDKTAKMWDLSSNQAIQ--IAQH 126 (368)
T ss_dssp SEEEEEEECTTSCEEEEEEE-ECSSCEEEE---EECT-TSSEEEEEE----------TTSEEEEEETTTTEEEE--EEEC
T ss_pred CcEEEEEcCCCCceeEEEec-cccCCEEEE---EECc-CCCEEEEEc----------CCCcEEEEEcCCCCcee--eccc
Confidence 5799999876 4444 2322 223444444 4544 346777775 24799999988765433 3456
Q ss_pred cCceeeecc---ccCeEEEEe--CCEEEEEEcCCCceee-eeecccceeEEEEEEEECCEEEEeeccccEEEEEEecCCC
Q psy7977 1083 KGACYSMCE---FNGKLLASI--NSTVRLFEWTNEKELR-LECSHFNNIIALFLKVKGDFILVGDLMRSLTLLQYKTMEG 1156 (1225)
Q Consensus 1083 ~G~v~al~~---f~G~LLa~v--g~~l~vy~l~~~~~L~-~e~~~~~~~i~~~l~~~g~~IlvGD~~kSv~~l~y~~~~~ 1156 (1225)
+++|++++- -+|++|++. ..+|++|++...+.+. .. .... ...+...++.++++..-..+.+...+....
T Consensus 127 ~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 202 (368)
T 3mmy_A 127 DAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQ---LPER-CYCADVIYPMAVVATAERGLIVYQLENQPS 202 (368)
T ss_dssp SSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEE---CSSC-EEEEEEETTEEEEEEGGGCEEEEECSSSCE
T ss_pred cCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEe---cCCC-ceEEEecCCeeEEEeCCCcEEEEEeccccc
Confidence 788999883 467655543 5899999998776554 21 1122 356667788999999999988877765544
Q ss_pred eEEEEeccCCCceeEEEEeeeCC-----cEEEEcCCCcEEEEEeCCC
Q psy7977 1157 SFEEISRDYNPNWMTSIEILDDE-----LFLGAENSYNLFICQKDSA 1198 (1225)
Q Consensus 1157 ~L~~~arD~~~~wvta~~~Ld~d-----t~l~aD~~gNl~vl~~~~~ 1198 (1225)
.+..+.. .......+..+.... .++.+..+|.+.+...+..
T Consensus 203 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~ 248 (368)
T 3mmy_A 203 EFRRIES-PLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPP 248 (368)
T ss_dssp EEEECCC-SCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCS
T ss_pred hhhhccc-cccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCC
Confidence 4444333 334445555555333 2999999999999988765
No 57
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=96.02 E-value=2 Score=46.98 Aligned_cols=147 Identities=12% Similarity=0.094 Sum_probs=86.6
Q ss_pred cccccCeEEEEeeCCCeEEEEccCcEEEEecCCcceeeeecCCCCCcEEEEEec--CCEEEEE-ECCeEEEEEeecccee
Q psy7977 262 FTSDQQTFYCGNVDPRTVLQVTPSAAILISTESKARVSSWEPPNGKSISVVSCN--KNQVLCA-TGCDVYYLEVHGSEIK 338 (1225)
Q Consensus 262 F~~~~~TL~ag~l~~~~iVQVT~~~IRli~~~~~~~i~eW~~p~g~~Iv~As~n--~~~VlVa-sgg~Lv~feid~~~L~ 338 (1225)
|..+++.|+++.. ...|++.+.+.++.+..+.... ..|.+++.. +++++.+ .++.|.++++..++..
T Consensus 21 fsp~~~~l~s~~~---------dg~v~lWd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~ 90 (304)
T 2ynn_A 21 FHPTEPWVLTTLY---------SGRVELWNYETQVEVRSIQVTE-TPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKV 90 (304)
T ss_dssp ECSSSSEEEEEET---------TSEEEEEETTTTEEEEEEECCS-SCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEE
T ss_pred ECCCCCEEEEEcC---------CCcEEEEECCCCceeEEeeccC-CcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEE
Confidence 4455666666653 2346677766554555554322 345555543 4566666 5789999888765322
Q ss_pred EEeeeccCceeEEEEeccCCCCCCCCccccCcEEEEEEecCCeEEEEeCCCcceEEeecCCC-CCCcccEEEEeeCCeeE
Q psy7977 339 QLAHRALEYEVACLDISPLSNEETSSEPAKAQLAAVGLWTDISARLLSLPSLEEVCKEPLGG-EIIPRSILMTCFEGHCY 417 (1225)
Q Consensus 339 ev~~~~l~~eIScLai~~~~~~~~~~~~~~s~~laVG~w~d~tv~IlsL~~Le~v~~~~L~~-~~~P~SIll~~l~~~~~ 417 (1225)
.. -..-...|.|+++.+. ..+++.|.+ |++|++|++.+-..+. +.+.+ .....++.+.. .+..+
T Consensus 91 ~~-~~~h~~~v~~~~~~~~-----------~~~l~sgs~-D~~v~lWd~~~~~~~~-~~~~~h~~~v~~v~~~p-~~~~~ 155 (304)
T 2ynn_A 91 VD-FEAHPDYIRSIAVHPT-----------KPYVLSGSD-DLTVKLWNWENNWALE-QTFEGHEHFVMCVAFNP-KDPST 155 (304)
T ss_dssp EE-EECCSSCEEEEEECSS-----------SSEEEEEET-TSCEEEEEGGGTTEEE-EEECCCCSCEEEEEECT-TCTTE
T ss_pred EE-EeCCCCcEEEEEEcCC-----------CCEEEEECC-CCeEEEEECCCCcchh-hhhcccCCcEEEEEECC-CCCCE
Confidence 11 1123567899998752 457888887 9999999996532221 11211 11112232221 13457
Q ss_pred EEEEECCCcEEEEEEc
Q psy7977 418 LLVALGDGSMFYFSLD 433 (1225)
Q Consensus 418 LlVGl~nG~L~~y~ld 433 (1225)
|..|-.||.+..|.+.
T Consensus 156 l~sgs~D~~v~iwd~~ 171 (304)
T 2ynn_A 156 FASGCLDRTVKVWSLG 171 (304)
T ss_dssp EEEEETTSEEEEEETT
T ss_pred EEEEeCCCeEEEEECC
Confidence 8899999999999875
No 58
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=95.99 E-value=2.7 Score=46.97 Aligned_cols=134 Identities=21% Similarity=0.225 Sum_probs=81.2
Q ss_pred CcEEEEecCCcceeeeecC-CCCCcEEEEEecC---CEEEEE-ECCeEEEEEeeccceeEEe-eeccCceeEEEEeccCC
Q psy7977 285 SAAILISTESKARVSSWEP-PNGKSISVVSCNK---NQVLCA-TGCDVYYLEVHGSEIKQLA-HRALEYEVACLDISPLS 358 (1225)
Q Consensus 285 ~~IRli~~~~~~~i~eW~~-p~g~~Iv~As~n~---~~VlVa-sgg~Lv~feid~~~L~ev~-~~~l~~eIScLai~~~~ 358 (1225)
..|++++...++....... .....|.+.+.+. .+++.+ .++.|.++++....+.... .......|.|+++.+-
T Consensus 96 g~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~- 174 (383)
T 3ei3_B 96 GDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGSVIQVFAKTDSWDYWYCCVDVSVS- 174 (383)
T ss_dssp SCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTSCEEEEEECCCCSSCCEEEEEEETT-
T ss_pred CeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCCCceEEEeccCCCCCCeEEEEECCC-
Confidence 3467777665444444432 2344688887764 344444 5789999888743333332 2223467899998752
Q ss_pred CCCCCCccccCcEEEEEEecCCeEEEEeCCCcceEEeecCCCCCCcccEEEEeeCCee-EEEEEECCCcEEEEEEcC
Q psy7977 359 NEETSSEPAKAQLAAVGLWTDISARLLSLPSLEEVCKEPLGGEIIPRSILMTCFEGHC-YLLVALGDGSMFYFSLDP 434 (1225)
Q Consensus 359 ~~~~~~~~~~s~~laVG~w~d~tv~IlsL~~Le~v~~~~L~~~~~P~SIll~~l~~~~-~LlVGl~nG~L~~y~ld~ 434 (1225)
..+++.|.. |++|++|++.. +.+....-. .....++.+. +... +|+.|..||.+..|.+..
T Consensus 175 ----------~~~l~~~~~-d~~i~i~d~~~-~~~~~~~~h-~~~v~~~~~~--~~~~~~l~s~~~d~~i~iwd~~~ 236 (383)
T 3ei3_B 175 ----------RQMLATGDS-TGRLLLLGLDG-HEIFKEKLH-KAKVTHAEFN--PRCDWLMATSSVDATVKLWDLRN 236 (383)
T ss_dssp ----------TTEEEEEET-TSEEEEEETTS-CEEEEEECS-SSCEEEEEEC--SSCTTEEEEEETTSEEEEEEGGG
T ss_pred ----------CCEEEEECC-CCCEEEEECCC-CEEEEeccC-CCcEEEEEEC--CCCCCEEEEEeCCCEEEEEeCCC
Confidence 458888887 99999999953 222221110 1122333333 2334 789999999999998764
No 59
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=95.92 E-value=2.9 Score=46.56 Aligned_cols=122 Identities=20% Similarity=0.210 Sum_probs=77.5
Q ss_pred CCCcEEEEEec--CCEEEEEE--CCeEEEEEeeccceeEEeeec-cC---ceeEEEEeccCCCCCCCCccccCcEEEEEE
Q psy7977 305 NGKSISVVSCN--KNQVLCAT--GCDVYYLEVHGSEIKQLAHRA-LE---YEVACLDISPLSNEETSSEPAKAQLAAVGL 376 (1225)
Q Consensus 305 ~g~~Iv~As~n--~~~VlVas--gg~Lv~feid~~~L~ev~~~~-l~---~eIScLai~~~~~~~~~~~~~~s~~laVG~ 376 (1225)
.+....+.++. +.+++++. +++|..++++.+.+..+.... .. ..+.++++++- .++++++.
T Consensus 209 ~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spd-----------g~~l~v~~ 277 (361)
T 3scy_A 209 PGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPD-----------GKYLYASN 277 (361)
T ss_dssp TTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTT-----------SSEEEEEE
T ss_pred CCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCC-----------CCEEEEEC
Confidence 33345555543 44677763 688999988866555544322 11 33567777652 45788888
Q ss_pred ec-CCeEEEEeCC----CcceEEeecCCCCCCcccEEEEeeCCeeEEEEEE-CCCcEEEEEEcCCCCcccc
Q psy7977 377 WT-DISARLLSLP----SLEEVCKEPLGGEIIPRSILMTCFEGHCYLLVAL-GDGSMFYFSLDPASGRLTD 441 (1225)
Q Consensus 377 w~-d~tv~IlsL~----~Le~v~~~~L~~~~~P~SIll~~l~~~~~LlVGl-~nG~L~~y~ld~~sg~Ls~ 441 (1225)
.. ++++.+|.++ .++.+..... ...|+.+.+.. ...+|+++. .+|.+..|.+|..+|++..
T Consensus 278 ~~~~~~i~v~~~~~~~g~~~~~~~~~~--g~~~~~~~~sp--dg~~l~~~~~~~~~v~v~~~d~~~g~~~~ 344 (361)
T 3scy_A 278 RLKADGVAIFKVDETNGTLTKVGYQLT--GIHPRNFIITP--NGKYLLVACRDTNVIQIFERDQATGLLTD 344 (361)
T ss_dssp CSSSCEEEEEEECTTTCCEEEEEEEEC--SSCCCEEEECT--TSCEEEEEETTTTEEEEEEECTTTCCEEE
T ss_pred CCCCCEEEEEEEcCCCCcEEEeeEecC--CCCCceEEECC--CCCEEEEEECCCCCEEEEEEECCCCcEee
Confidence 75 6899999995 2333333222 24677776643 345788887 6788999999988887654
No 60
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=95.91 E-value=4.7 Score=48.97 Aligned_cols=236 Identities=11% Similarity=0.095 Sum_probs=119.5
Q ss_pred CcEEEEecCCcceeeeecCCCCCcEEEEEec--CCEEEEE-ECCeEEEEEeecccee-EEeee-----ccCceeEEEEec
Q psy7977 285 SAAILISTESKARVSSWEPPNGKSISVVSCN--KNQVLCA-TGCDVYYLEVHGSEIK-QLAHR-----ALEYEVACLDIS 355 (1225)
Q Consensus 285 ~~IRli~~~~~~~i~eW~~p~g~~Iv~As~n--~~~VlVa-sgg~Lv~feid~~~L~-ev~~~-----~l~~eIScLai~ 355 (1225)
+.|++.+....+....+.. ....|.+.+.+ +.+++.+ .++.|.++++..++.. ..... .-...|.|++..
T Consensus 170 ~~v~lwd~~~~~~~~~l~~-H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~s 248 (611)
T 1nr0_A 170 NTVAIFEGPPFKFKSTFGE-HTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWS 248 (611)
T ss_dssp SCEEEEETTTBEEEEEECC-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEEC
T ss_pred CeEEEEECCCCeEeeeecc-ccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEEC
Confidence 3466666554333444332 23457777765 3444444 5788988887655322 22111 234678899987
Q ss_pred cCCCCCCCCccccCcEEEEEEecCCeEEEEeCCCcceEEeecCCCCCCcccEEEEeeCCeeEEEEEECCCcEEEEEEcCC
Q psy7977 356 PLSNEETSSEPAKAQLAAVGLWTDISARLLSLPSLEEVCKEPLGGEIIPRSILMTCFEGHCYLLVALGDGSMFYFSLDPA 435 (1225)
Q Consensus 356 ~~~~~~~~~~~~~s~~laVG~w~d~tv~IlsL~~Le~v~~~~L~~~~~P~SIll~~l~~~~~LlVGl~nG~L~~y~ld~~ 435 (1225)
+- ..+++.|.. |++|+||++.+.+.+.............+.+. . ...+|+.+..||.+..+...
T Consensus 249 pd-----------g~~l~s~s~-D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~l~s~s~d~~i~~~~~~-- 312 (611)
T 1nr0_A 249 PD-----------GTKIASASA-DKTIKIWNVATLKVEKTIPVGTRIEDQQLGII-W-TKQALVSISANGFINFVNPE-- 312 (611)
T ss_dssp TT-----------SSEEEEEET-TSEEEEEETTTTEEEEEEECCSSGGGCEEEEE-E-CSSCEEEEETTCCEEEEETT--
T ss_pred CC-----------CCEEEEEeC-CCeEEEEeCCCCceeeeecCCCCccceeEEEE-E-cCCEEEEEeCCCcEEEEeCC--
Confidence 52 457888886 99999999987655443333211111112222 2 34568888899998877643
Q ss_pred CCccccceeeeecC-ccceEEEEeeCCceEEEEecCCcEEEEEcCCeeEEeecccc------------cccccccCCCCC
Q psy7977 436 SGRLTDKKKVTLGT-QPTVLKTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLR------------QVNHMCSLNAES 502 (1225)
Q Consensus 436 sg~Ls~~k~~~LG~-~pV~L~~~~~~g~~~Vfa~sdrP~liyss~g~l~~~pl~~~------------~v~~~s~F~se~ 502 (1225)
+++. ....-|. .+|.-..+..+|. .++..| ..+.++++.+... .+.++ .|...
T Consensus 313 ~~~~---~~~~~gh~~~v~~l~~spdg~-~l~s~s--------~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~-~~s~~- 378 (611)
T 1nr0_A 313 LGSI---DQVRYGHNKAITALSSSADGK-TLFSAD--------AEGHINSWDISTGISNRVFPDVHATMITGI-KTTSK- 378 (611)
T ss_dssp TTEE---EEEECCCSSCEEEEEECTTSS-EEEEEE--------TTSCEEEEETTTCCEEECSSCSCSSCEEEE-EECTT-
T ss_pred CCCc---ceEEcCCCCCEEEEEEeCCCC-EEEEEe--------CCCcEEEEECCCCceeeecccCCcceEEEE-EECCC-
Confidence 2221 0111121 2222222222222 222222 2333443333211 11111 12211
Q ss_pred CCCeEEEE-eCCeEEEEEEcCCC--CeeeEEEeCCCcccEEEEecCCCEEEEEE
Q psy7977 503 YPDSLALA-TDSTFTFGTIDEIQ--KLHIRTVPLGEAPRRIAYQESSQTFGVIT 553 (1225)
Q Consensus 503 ~p~glv~v-s~~~LrI~~i~~~~--~l~ir~IpLg~TprrIay~p~s~~~vV~t 553 (1225)
..++.+ .++.+++-.+.... ........+...|..++++|..+.+++++
T Consensus 379 --~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~ 430 (611)
T 1nr0_A 379 --GDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAAC 430 (611)
T ss_dssp --SCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEE
T ss_pred --CcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEe
Confidence 123333 35677777665432 11222346777888999999887777765
No 61
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=95.80 E-value=1.4 Score=50.05 Aligned_cols=222 Identities=11% Similarity=0.103 Sum_probs=116.6
Q ss_pred CcEEEEEec---CCEEEEE-ECCeEEEEEeecccee-----EEee-eccCceeEEEEeccCCCCCCCCccccCcEEEEEE
Q psy7977 307 KSISVVSCN---KNQVLCA-TGCDVYYLEVHGSEIK-----QLAH-RALEYEVACLDISPLSNEETSSEPAKAQLAAVGL 376 (1225)
Q Consensus 307 ~~Iv~As~n---~~~VlVa-sgg~Lv~feid~~~L~-----ev~~-~~l~~eIScLai~~~~~~~~~~~~~~s~~laVG~ 376 (1225)
..|.+.+.+ +.+++.+ .++.|.++++..+++. .+.. ..-...|.|++..+. ...+++.|.
T Consensus 82 ~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~----------~~~~l~s~~ 151 (402)
T 2aq5_A 82 APVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPT----------AQNVLLSAG 151 (402)
T ss_dssp SCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSS----------BTTEEEEEE
T ss_pred CCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcC----------CCCEEEEEc
Confidence 468877775 3455555 5889999998765321 1111 123567899998762 235788888
Q ss_pred ecCCeEEEEeCCCcceEEeecCCC-CCCcccEEEEeeCCeeEEEEEECCCcEEEEEEcCCCCccccceeeeecCcc--ce
Q psy7977 377 WTDISARLLSLPSLEEVCKEPLGG-EIIPRSILMTCFEGHCYLLVALGDGSMFYFSLDPASGRLTDKKKVTLGTQP--TV 453 (1225)
Q Consensus 377 w~d~tv~IlsL~~Le~v~~~~L~~-~~~P~SIll~~l~~~~~LlVGl~nG~L~~y~ld~~sg~Ls~~k~~~LG~~p--V~ 453 (1225)
. |++|+||++.+.+.+....... .....++.+. ....+|+.|..||.+..|.+.. ++.. +....+... +.
T Consensus 152 ~-dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~d~~i~iwd~~~--~~~~--~~~~~~~~~~~~~ 224 (402)
T 2aq5_A 152 C-DNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWS--RDGALICTSCRDKRVRVIEPRK--GTVV--AEKDRPHEGTRPV 224 (402)
T ss_dssp T-TSCEEEEETTTTEEEEEECTTTCCSCEEEEEEC--TTSSCEEEEETTSEEEEEETTT--TEEE--EEEECSSCSSSCC
T ss_pred C-CCEEEEEECCCCCccEEEecCCCCCceEEEEEC--CCCCEEEEEecCCcEEEEeCCC--Ccee--eeeccCCCCCcce
Confidence 7 9999999998755544321110 1122333332 2456899999999999887653 3211 111012211 11
Q ss_pred EEEEeeCCceEEEEec-----CCcEEEEEcCC-e--eEEeecccccccccccCCCCCCCCeEEEEe--CCeEEEEEEcCC
Q psy7977 454 LKTFRSLSTTNVFACS-----DRPTVIYSSNH-K--LVFSNVNLRQVNHMCSLNAESYPDSLALAT--DSTFTFGTIDEI 523 (1225)
Q Consensus 454 L~~~~~~g~~~Vfa~s-----drP~liyss~g-~--l~~~pl~~~~v~~~s~F~se~~p~glv~vs--~~~LrI~~i~~~ 523 (1225)
-..+..+ ..++++| ++-..+|..+. . +....+....-.....|+.. ...++++. ++.+++..+...
T Consensus 225 ~~~~~~~--~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~g~~dg~i~i~d~~~~ 300 (402)
T 2aq5_A 225 HAVFVSE--GKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPD--TNIVYLCGKGDSSIRYFEITSE 300 (402)
T ss_dssp EEEECST--TEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETT--TTEEEEEETTCSCEEEEEECSS
T ss_pred EEEEcCC--CcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCC--CCEEEEEEcCCCeEEEEEecCC
Confidence 1122212 2344444 23333443221 1 22222211111111122211 12343333 578999999876
Q ss_pred CC--eeeEEEeCCCcccEEEEecCCCEE
Q psy7977 524 QK--LHIRTVPLGEAPRRIAYQESSQTF 549 (1225)
Q Consensus 524 ~~--l~ir~IpLg~TprrIay~p~s~~~ 549 (1225)
.. ......+-...++.++++|....+
T Consensus 301 ~~~~~~l~~~~~~~~v~~~~~sp~~~~~ 328 (402)
T 2aq5_A 301 APFLHYLSMFSSKESQRGMGYMPKRGLE 328 (402)
T ss_dssp TTCEEEEEEECCSSCCSEEEECCGGGSC
T ss_pred CcceEeecccccCCcccceEEecccccc
Confidence 53 233344445788999999876653
No 62
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=95.63 E-value=0.84 Score=52.69 Aligned_cols=171 Identities=11% Similarity=0.200 Sum_probs=111.1
Q ss_pred EEEEEEECCCCcEEEEEECCCCCceEEEEEEEecCCCCeEEEEEeeeeCCCCCCCcceEEEEEEEeCCcEEEEEEEEecC
Q psy7977 1005 HNLLIIDQNTFEILHAHQLFPGEYALSLISSKFGEDPNTYFVLGTAVVHPEENEPKQGRIIIFHYDDGKLQQIAEKEIKG 1084 (1225)
Q Consensus 1005 s~irlvdp~t~~~i~~~eL~~nE~~~si~~v~~~~~~~~~lvVGTa~~~~eed~~~~GrI~vf~i~~~kL~lv~~~ev~G 1084 (1225)
+.|++.|..+.+.+..+.-. ...+.|+ .+ ...++++|+. .|.|.+|++..++..... ..-.+
T Consensus 153 g~i~iwd~~~~~~~~~~~~h-~~~v~~l---~~---~~~~l~sg~~----------dg~i~vwd~~~~~~~~~~-~~h~~ 214 (435)
T 1p22_A 153 NTIKIWDKNTLECKRILTGH-TGSVLCL---QY---DERVIITGSS----------DSTVRVWDVNTGEMLNTL-IHHCE 214 (435)
T ss_dssp SCEEEEESSSCCEEEEECCC-SSCEEEE---EC---CSSEEEEEET----------TSCEEEEESSSCCEEEEE-CCCCS
T ss_pred CeEEEEeCCCCeEEEEEcCC-CCcEEEE---EE---CCCEEEEEcC----------CCeEEEEECCCCcEEEEE-cCCCC
Confidence 47999999999888776532 3345554 34 2468888852 478999999876432211 12367
Q ss_pred ceeeeccccCeEEEE-eCCEEEEEEcCCCceee--eeecccceeEEEEEEEECCEEEEeeccccEEEEEEecCCCeEEEE
Q psy7977 1085 ACYSMCEFNGKLLAS-INSTVRLFEWTNEKELR--LECSHFNNIIALFLKVKGDFILVGDLMRSLTLLQYKTMEGSFEEI 1161 (1225)
Q Consensus 1085 ~v~al~~f~G~LLa~-vg~~l~vy~l~~~~~L~--~e~~~~~~~i~~~l~~~g~~IlvGD~~kSv~~l~y~~~~~~L~~~ 1161 (1225)
+|++++--.++|++| ...+|++|++...+.+. ......... +..+...++++++|..-..+.+ |+....+....
T Consensus 215 ~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~l~s~~~dg~i~v--wd~~~~~~~~~ 291 (435)
T 1p22_A 215 AVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAA-VNVVDFDDKYIVSASGDRTIKV--WNTSTCEFVRT 291 (435)
T ss_dssp CEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSC-EEEEEEETTEEEEEETTSEEEE--EETTTCCEEEE
T ss_pred cEEEEEEcCCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCc-EEEEEeCCCEEEEEeCCCeEEE--EECCcCcEEEE
Confidence 888887445555554 45799999998765442 111122222 3566668899999988777766 45444433332
Q ss_pred eccCCCceeEEEEeeeCCcEEEEcCCCcEEEEEeCCC
Q psy7977 1162 SRDYNPNWMTSIEILDDELFLGAENSYNLFICQKDSA 1198 (1225)
Q Consensus 1162 arD~~~~wvta~~~Ld~dt~l~aD~~gNl~vl~~~~~ 1198 (1225)
-+ .+...++++.+ +.+.++.+..+|.+.+......
T Consensus 292 ~~-~~~~~v~~~~~-~~~~l~~g~~dg~i~iwd~~~~ 326 (435)
T 1p22_A 292 LN-GHKRGIACLQY-RDRLVVSGSSDNTIRLWDIECG 326 (435)
T ss_dssp EE-CCSSCEEEEEE-ETTEEEEEETTSCEEEEETTTC
T ss_pred Ec-CCCCcEEEEEe-CCCEEEEEeCCCeEEEEECCCC
Confidence 22 34566777777 7778999999999999887643
No 63
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=95.60 E-value=4.2 Score=46.16 Aligned_cols=239 Identities=13% Similarity=0.133 Sum_probs=119.4
Q ss_pred cEEEEecCCcceeee-----ecCCCCCcEEEEEec-CCEEEEE--ECCeEEEEEeeccceeEEeeeccCceeEEEEeccC
Q psy7977 286 AAILISTESKARVSS-----WEPPNGKSISVVSCN-KNQVLCA--TGCDVYYLEVHGSEIKQLAHRALEYEVACLDISPL 357 (1225)
Q Consensus 286 ~IRli~~~~~~~i~e-----W~~p~g~~Iv~As~n-~~~VlVa--sgg~Lv~feid~~~L~ev~~~~l~~eIScLai~~~ 357 (1225)
.|++++...++.... +..+. ..|...+.. +..++++ .++.+..++++..+....- ..-...+.|+++.+-
T Consensus 145 ~i~~~d~~~g~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~-~~~~~~~~~~~~~~~ 222 (433)
T 3bws_A 145 GMDVLDINSGQTVRLSPPEKYKKKL-GFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATV-DLTGKWSKILLYDPI 222 (433)
T ss_dssp SEEEEETTTCCEEEECCCHHHHTTC-CEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEE-ECSSSSEEEEEEETT
T ss_pred eEEEEECCCCeEeeecCcccccccC-CceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEE-cCCCCCeeEEEEcCC
Confidence 477887765544432 22222 246666653 4555555 4688988887654332211 123456888888652
Q ss_pred CCCCCCCccccCcEEEEEEecCCeEEEEeCCCcceEEeecCCCCCCcccEEEEeeCCeeEEEEEE--------CCCcEEE
Q psy7977 358 SNEETSSEPAKAQLAAVGLWTDISARLLSLPSLEEVCKEPLGGEIIPRSILMTCFEGHCYLLVAL--------GDGSMFY 429 (1225)
Q Consensus 358 ~~~~~~~~~~~s~~laVG~w~d~tv~IlsL~~Le~v~~~~L~~~~~P~SIll~~l~~~~~LlVGl--------~nG~L~~ 429 (1225)
...++++.+.+++|++|++.+.+.+..... ...|.++.+. ....+|+++. .||.+..
T Consensus 223 -----------~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~--~~~~~~~~~~--~~g~~l~~~~~~~~~~~~~dg~i~~ 287 (433)
T 3bws_A 223 -----------RDLVYCSNWISEDISVIDRKTKLEIRKTDK--IGLPRGLLLS--KDGKELYIAQFSASNQESGGGRLGI 287 (433)
T ss_dssp -----------TTEEEEEETTTTEEEEEETTTTEEEEECCC--CSEEEEEEEC--TTSSEEEEEEEESCTTCSCCEEEEE
T ss_pred -----------CCEEEEEecCCCcEEEEECCCCcEEEEecC--CCCceEEEEc--CCCCEEEEEECCCCccccCCCeEEE
Confidence 345666665699999999987555443222 1224444433 2344666666 4778877
Q ss_pred EEEcCCCCccccceeeeecCccceEEEEeeCCceEEEEe-cC-CcEEEEEc-CCeeE-EeecccccccccccCCCCCCCC
Q psy7977 430 FSLDPASGRLTDKKKVTLGTQPTVLKTFRSLSTTNVFAC-SD-RPTVIYSS-NHKLV-FSNVNLRQVNHMCSLNAESYPD 505 (1225)
Q Consensus 430 y~ld~~sg~Ls~~k~~~LG~~pV~L~~~~~~g~~~Vfa~-sd-rP~liyss-~g~l~-~~pl~~~~v~~~s~F~se~~p~ 505 (1225)
|.+. ++++... ...+. .+.-..+...| ..++++ +. .-..+|.. .++.. ..+.. ..+.. ..|+.. ..
T Consensus 288 ~d~~--~~~~~~~--~~~~~-~~~~~~~~~~g-~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~-~~~s~d--g~ 357 (433)
T 3bws_A 288 YSMD--KEKLIDT--IGPPG-NKRHIVSGNTE-NKIYVSDMCCSKIEVYDLKEKKVQKSIPVF-DKPNT-IALSPD--GK 357 (433)
T ss_dssp EETT--TTEEEEE--EEEEE-CEEEEEECSST-TEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEE-EEECTT--SS
T ss_pred EECC--CCcEEee--ccCCC-CcceEEECCCC-CEEEEEecCCCEEEEEECCCCcEEEEecCC-CCCCe-EEEcCC--CC
Confidence 7654 3332111 10111 11111222122 234443 22 22233332 22221 11111 11111 112111 12
Q ss_pred eEEEEeCC----------------eEEEEEEcCCCCeeeEEEeCCCcccEEEEecCCCEEEEEE
Q psy7977 506 SLALATDS----------------TFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVIT 553 (1225)
Q Consensus 506 glv~vs~~----------------~LrI~~i~~~~~l~ir~IpLg~TprrIay~p~s~~~vV~t 553 (1225)
.++....+ .+++..+ ...-.++.++.+..|..++++|..+.++++.
T Consensus 358 ~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~--~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~ 419 (433)
T 3bws_A 358 YLYVSCRGPNHPTEGYLKKGLVLGKVYVIDT--TTDTVKEFWEAGNQPTGLDVSPDNRYLVISD 419 (433)
T ss_dssp EEEEEECCCCCTTTCTTSCCSSCCEEEEEET--TTTEEEEEEECSSSEEEEEECTTSCEEEEEE
T ss_pred EEEEEecCCCccccccccccccceEEEEEEC--CCCcEEEEecCCCCCceEEEcCCCCEEEEEE
Confidence 23333332 4555444 3344566778888999999999999887776
No 64
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=95.54 E-value=3.5 Score=44.83 Aligned_cols=114 Identities=13% Similarity=-0.023 Sum_probs=73.9
Q ss_pred CCCcEEEEEec--CCEEEEE-ECCeEEEEEeeccc--eeEEeeeccCceeEEEEeccCCCCCCCCccccCc-EEEEEEec
Q psy7977 305 NGKSISVVSCN--KNQVLCA-TGCDVYYLEVHGSE--IKQLAHRALEYEVACLDISPLSNEETSSEPAKAQ-LAAVGLWT 378 (1225)
Q Consensus 305 ~g~~Iv~As~n--~~~VlVa-sgg~Lv~feid~~~--L~ev~~~~l~~eIScLai~~~~~~~~~~~~~~s~-~laVG~w~ 378 (1225)
....|.+.+.+ +.+++.+ .++.|.+++++..+ ............|.|++..+. .. +++.|..
T Consensus 10 h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----------~~~~l~~~~~- 77 (342)
T 1yfq_A 10 PKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDN-----------TDLQIYVGTV- 77 (342)
T ss_dssp CSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEES-----------SSEEEEEEET-
T ss_pred CCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCC-----------CCcEEEEEcC-
Confidence 33467777765 4566666 57899999988654 112223345678999998752 56 7888887
Q ss_pred CCeEEEEeC-CCcceEEeecCCCCCCcccEEEEeeCCeeEEEEEECCCcEEEEEEc
Q psy7977 379 DISARLLSL-PSLEEVCKEPLGGEIIPRSILMTCFEGHCYLLVALGDGSMFYFSLD 433 (1225)
Q Consensus 379 d~tv~IlsL-~~Le~v~~~~L~~~~~P~SIll~~l~~~~~LlVGl~nG~L~~y~ld 433 (1225)
|++|++|++ ...+..............++.+.. ..+|+.+..||.+..|.+.
T Consensus 78 dg~i~~wd~~~~~~~~~~~~~~~~~~v~~l~~~~---~~~l~s~~~d~~i~iwd~~ 130 (342)
T 1yfq_A 78 QGEILKVDLIGSPSFQALTNNEANLGICRICKYG---DDKLIAASWDGLIEVIDPR 130 (342)
T ss_dssp TSCEEEECSSSSSSEEECBSCCCCSCEEEEEEET---TTEEEEEETTSEEEEECHH
T ss_pred CCeEEEEEeccCCceEeccccCCCCceEEEEeCC---CCEEEEEcCCCeEEEEccc
Confidence 999999999 764432211100012223454443 4678899999999988765
No 65
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=95.53 E-value=1.1 Score=57.65 Aligned_cols=216 Identities=10% Similarity=0.111 Sum_probs=124.4
Q ss_pred cEEEEEec--CCEEEEE-ECCeEEEEEeeccce-------------------------------------------eEEe
Q psy7977 308 SISVVSCN--KNQVLCA-TGCDVYYLEVHGSEI-------------------------------------------KQLA 341 (1225)
Q Consensus 308 ~Iv~As~n--~~~VlVa-sgg~Lv~feid~~~L-------------------------------------------~ev~ 341 (1225)
.|.+.++. +.+++++ .++++.+++++.+++ ..+.
T Consensus 490 ~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 569 (902)
T 2oaj_A 490 AVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPST 569 (902)
T ss_dssp CEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEE
T ss_pred ceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeE
Confidence 57777766 5666666 688999998874421 1111
Q ss_pred eec-cCceeEEEEeccCCCCCCCCccccCcEEEEEEecCCeEEEEeCCCcceEEeec---CC-C-CCCcccEEEEee---
Q psy7977 342 HRA-LEYEVACLDISPLSNEETSSEPAKAQLAAVGLWTDISARLLSLPSLEEVCKEP---LG-G-EIIPRSILMTCF--- 412 (1225)
Q Consensus 342 ~~~-l~~eIScLai~~~~~~~~~~~~~~s~~laVG~w~d~tv~IlsL~~Le~v~~~~---L~-~-~~~P~SIll~~l--- 412 (1225)
... ....|+++++++. . ++|+|.. |++|+||++.+-..+.... +. + .....++.+.-+
T Consensus 570 ~l~~h~~~V~svafSpd-----------G-~lAsgs~-D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~ 636 (902)
T 2oaj_A 570 AVHANKGKTSAINNSNI-----------G-FVGIAYA-AGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYG 636 (902)
T ss_dssp EECCCSCSEEEEEECBT-----------S-EEEEEET-TSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECT
T ss_pred EEEcCCCcEEEEEecCC-----------c-EEEEEeC-CCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecC
Confidence 111 3567888887652 4 8999997 9999999997755554322 21 1 223456666522
Q ss_pred CC---eeEEEEEECCCcEEEEEEcCC-CCccccceeeeecC------cc-ceEEEEeeC--------------------C
Q psy7977 413 EG---HCYLLVALGDGSMFYFSLDPA-SGRLTDKKKVTLGT------QP-TVLKTFRSL--------------------S 461 (1225)
Q Consensus 413 ~~---~~~LlVGl~nG~L~~y~ld~~-sg~Ls~~k~~~LG~------~p-V~L~~~~~~--------------------g 461 (1225)
++ ..+|+.|..||.+..|.+.+. +|+... .+.|. .| +.+.++... -
T Consensus 637 ~Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~~~~---~~~~~~~~~~~~~v~~i~~~~~~~~~~~~a~~~~~~~l~~~~~~ 713 (902)
T 2oaj_A 637 DDGYSSILMVCGTDMGEVITYKILPASGGKFDV---QLMDITNVTSKGPIHKIDAFSKETKSSCLATIPKMQNLSKGLCI 713 (902)
T ss_dssp TSSSEEEEEEEEETTSEEEEEEEEECGGGCEEE---EEEEEEECCSSCCCCEEEEEETTTCCBCBCBHHHHHGGGGTCCC
T ss_pred CCCCcceEEEEEecCCcEEEEEEecCCCCcEEE---EecCceecCCCCceEEEEeEecCCCCcccCCHHHHhccCCCCCC
Confidence 12 479999999999999998553 444221 11121 12 234455311 1
Q ss_pred ceEEEEecCCcEEEEEc-CCeeEEeecccc-ccccc--ccCCCC--CCC--CeEEEEe-CCeEEEEEEcCCCCeeeEEEe
Q psy7977 462 TTNVFACSDRPTVIYSS-NHKLVFSNVNLR-QVNHM--CSLNAE--SYP--DSLALAT-DSTFTFGTIDEIQKLHIRTVP 532 (1225)
Q Consensus 462 ~~~Vfa~sdrP~liyss-~g~l~~~pl~~~-~v~~~--s~F~se--~~p--~glv~vs-~~~LrI~~i~~~~~l~ir~Ip 532 (1225)
...++++|++-.-+|+- .++....-.... .+.++ ..|.+. .-+ .+|+... ++.+++..++.+..+...++|
T Consensus 714 ~~~~l~~~~~~ir~~~~~~~k~~~k~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~s~p~l~~~~~~~~~ 793 (902)
T 2oaj_A 714 PGIVLITGFDDIRLITLGKSKSTHKGFKYPLAATGLSYISTVEKNNDRKNLTVIITLEINGHLRVFTIPDFKEQMSEHIP 793 (902)
T ss_dssp CEEEEEECSSEEEEECTTCCCEEEEECSSCEEEEEEEEEEEECSSSCEEEEEEEEEEETTSEEEEEETTTCCEEEEEECS
T ss_pred CeEEEEEeccceEEEeCccccceeeEcccceeeeEEEEEEeccccccccCceEEEEEeCCCcEEEEECcchHHHhhccCC
Confidence 23478888777666653 333322112211 11111 111111 112 3555554 479999999999887777777
Q ss_pred CCCcccE
Q psy7977 533 LGEAPRR 539 (1225)
Q Consensus 533 Lg~Tprr 539 (1225)
-...+++
T Consensus 794 ~~~~~~~ 800 (902)
T 2oaj_A 794 FPIAAKY 800 (902)
T ss_dssp SCCCHHH
T ss_pred ccccccc
Confidence 6666654
No 66
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=95.51 E-value=0.86 Score=52.57 Aligned_cols=167 Identities=13% Similarity=0.152 Sum_probs=111.2
Q ss_pred EEEEEEECCCCcEEEEEECCCCCceEEEEEEEecCCCCeEEEEEeeeeCCCCCCCcceEEEEEEEeCCc-EEEEEE-EEe
Q psy7977 1005 HNLLIIDQNTFEILHAHQLFPGEYALSLISSKFGEDPNTYFVLGTAVVHPEENEPKQGRIIIFHYDDGK-LQQIAE-KEI 1082 (1225)
Q Consensus 1005 s~irlvdp~t~~~i~~~eL~~nE~~~si~~v~~~~~~~~~lvVGTa~~~~eed~~~~GrI~vf~i~~~k-L~lv~~-~ev 1082 (1225)
+.|++.|..+.+.+..+.- ..+.+.++ .|. ..+++.|+. .|.|++|++..++ +..... ..-
T Consensus 193 g~i~vwd~~~~~~~~~~~~-h~~~v~~l---~~~---~~~l~s~s~----------dg~i~vwd~~~~~~~~~~~~~~~~ 255 (435)
T 1p22_A 193 STVRVWDVNTGEMLNTLIH-HCEAVLHL---RFN---NGMMVTCSK----------DRSIAVWDMASPTDITLRRVLVGH 255 (435)
T ss_dssp SCEEEEESSSCCEEEEECC-CCSCEEEE---ECC---TTEEEEEET----------TSCEEEEECSSSSCCEEEEEECCC
T ss_pred CeEEEEECCCCcEEEEEcC-CCCcEEEE---EEc---CCEEEEeeC----------CCcEEEEeCCCCCCceeeeEecCC
Confidence 5799999999998887753 33445554 443 247777752 4789999987642 332222 234
Q ss_pred cCceeeeccccCeEEE-E-eCCEEEEEEcCCCceeeeeecccceeEEEEEEEECCEEEEeeccccEEEEEEecCCCeE-E
Q psy7977 1083 KGACYSMCEFNGKLLA-S-INSTVRLFEWTNEKELRLECSHFNNIIALFLKVKGDFILVGDLMRSLTLLQYKTMEGSF-E 1159 (1225)
Q Consensus 1083 ~G~v~al~~f~G~LLa-~-vg~~l~vy~l~~~~~L~~e~~~~~~~i~~~l~~~g~~IlvGD~~kSv~~l~y~~~~~~L-~ 1159 (1225)
.++|++++- +|..++ | -..+|++|++...+.+.. ....... +..+...++++++|..-..+.+. +...++. .
T Consensus 256 ~~~v~~~~~-~~~~l~s~~~dg~i~vwd~~~~~~~~~-~~~~~~~-v~~~~~~~~~l~~g~~dg~i~iw--d~~~~~~~~ 330 (435)
T 1p22_A 256 RAAVNVVDF-DDKYIVSASGDRTIKVWNTSTCEFVRT-LNGHKRG-IACLQYRDRLVVSGSSDNTIRLW--DIECGACLR 330 (435)
T ss_dssp SSCEEEEEE-ETTEEEEEETTSEEEEEETTTCCEEEE-EECCSSC-EEEEEEETTEEEEEETTSCEEEE--ETTTCCEEE
T ss_pred CCcEEEEEe-CCCEEEEEeCCCeEEEEECCcCcEEEE-EcCCCCc-EEEEEeCCCEEEEEeCCCeEEEE--ECCCCCEEE
Confidence 678888875 665444 4 347999999987776552 1112222 35566678999999988887775 4443333 3
Q ss_pred EEeccCCCceeEEEEeeeCCcEEEEcCCCcEEEEEeC
Q psy7977 1160 EISRDYNPNWMTSIEILDDELFLGAENSYNLFICQKD 1196 (1225)
Q Consensus 1160 ~~arD~~~~wvta~~~Ld~dt~l~aD~~gNl~vl~~~ 1196 (1225)
.+. .+...++++.+ +...++.+..+|.+.+....
T Consensus 331 ~~~--~h~~~v~~~~~-~~~~l~sg~~dg~i~vwd~~ 364 (435)
T 1p22_A 331 VLE--GHEELVRCIRF-DNKRIVSGAYDGKIKVWDLV 364 (435)
T ss_dssp EEC--CCSSCEEEEEC-CSSEEEEEETTSCEEEEEHH
T ss_pred EEe--CCcCcEEEEEe-cCCEEEEEeCCCcEEEEECC
Confidence 332 35567888888 77789999999999999874
No 67
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=95.50 E-value=1.2 Score=47.92 Aligned_cols=179 Identities=15% Similarity=0.185 Sum_probs=104.2
Q ss_pred EEEEEEECCCCcEEEEEECCCCCceEEEEEEEecCCCCeEEEEEeeeeCCCCCCCcceEEEEEEEeCCcEEEEEEEEecC
Q psy7977 1005 HNLLIIDQNTFEILHAHQLFPGEYALSLISSKFGEDPNTYFVLGTAVVHPEENEPKQGRIIIFHYDDGKLQQIAEKEIKG 1084 (1225)
Q Consensus 1005 s~irlvdp~t~~~i~~~eL~~nE~~~si~~v~~~~~~~~~lvVGTa~~~~eed~~~~GrI~vf~i~~~kL~lv~~~ev~G 1084 (1225)
..|+++|+ +.+.+..+.......+.+++ +..++ .+++..+ ..++|++|+.....+..+....--.
T Consensus 100 ~~i~~~d~-~g~~~~~~~~~~~~~~~~i~---~~~~g-~l~v~~~----------~~~~i~~~~~~g~~~~~~~~~~~~~ 164 (286)
T 1q7f_A 100 HQIQIYNQ-YGQFVRKFGATILQHPRGVT---VDNKG-RIIVVEC----------KVMRVIIFDQNGNVLHKFGCSKHLE 164 (286)
T ss_dssp CEEEEECT-TSCEEEEECTTTCSCEEEEE---ECTTS-CEEEEET----------TTTEEEEECTTSCEEEEEECTTTCS
T ss_pred CEEEEECC-CCcEEEEecCccCCCceEEE---EeCCC-CEEEEEC----------CCCEEEEEcCCCCEEEEeCCCCccC
Confidence 57888984 56666666655555666654 34434 3444332 1367777764322222221111113
Q ss_pred ceeeeccc-cCeEEEEe--CCEEEEEEcCCCceee-eeecccceeEEEEEEEE-CCEEEEeeccccEEEEEEecCCCeEE
Q psy7977 1085 ACYSMCEF-NGKLLASI--NSTVRLFEWTNEKELR-LECSHFNNIIALFLKVK-GDFILVGDLMRSLTLLQYKTMEGSFE 1159 (1225)
Q Consensus 1085 ~v~al~~f-~G~LLa~v--g~~l~vy~l~~~~~L~-~e~~~~~~~i~~~l~~~-g~~IlvGD~~kSv~~l~y~~~~~~L~ 1159 (1225)
.|.+|+-- +|+|+++- +..|++|+...+ .+. ......... +..+... .+.++|+|....=.+..|+++...+.
T Consensus 165 ~p~~i~~~~~g~l~v~~~~~~~i~~~~~~g~-~~~~~~~~g~~~~-p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g~~~~ 242 (286)
T 1q7f_A 165 FPNGVVVNDKQEIFISDNRAHCVKVFNYEGQ-YLRQIGGEGITNY-PIGVGINSNGEILIADNHNNFNLTIFTQDGQLIS 242 (286)
T ss_dssp SEEEEEECSSSEEEEEEGGGTEEEEEETTCC-EEEEESCTTTSCS-EEEEEECTTCCEEEEECSSSCEEEEECTTSCEEE
T ss_pred CcEEEEECCCCCEEEEECCCCEEEEEcCCCC-EEEEEccCCccCC-CcEEEECCCCCEEEEeCCCCEEEEEECCCCCEEE
Confidence 46776633 68888774 679999997543 333 211110112 3444432 34688888765323555777666677
Q ss_pred EEeccCCCceeEEEEeeeCCcEEEEcCCCcEEEEEeCCCCC
Q psy7977 1160 EISRDYNPNWMTSIEILDDELFLGAENSYNLFICQKDSAAT 1200 (1225)
Q Consensus 1160 ~~arD~~~~wvta~~~Ld~dt~l~aD~~gNl~vl~~~~~~~ 1200 (1225)
.+........+.++.+-.++.++++|.++.+.++++....|
T Consensus 243 ~~~~~~~~~~~~~i~~~~~g~l~vs~~~~~v~v~~~~~~~p 283 (286)
T 1q7f_A 243 ALESKVKHAQCFDVALMDDGSVVLASKDYRLYIYRYVQLAP 283 (286)
T ss_dssp EEEESSCCSCEEEEEEETTTEEEEEETTTEEEEEECSCCCC
T ss_pred EEcccCCCCcceeEEECCCCcEEEECCCCeEEEEEcccccc
Confidence 77665555556677776667788888888999999876544
No 68
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=95.47 E-value=2.2 Score=48.04 Aligned_cols=223 Identities=15% Similarity=0.140 Sum_probs=107.2
Q ss_pred cEEEEEec-CCEEEEE-ECCeEEEEEeeccceeE---EeeeccCceeEEEEeccCCCCCCCCccccCcEEEEEEecCCeE
Q psy7977 308 SISVVSCN-KNQVLCA-TGCDVYYLEVHGSEIKQ---LAHRALEYEVACLDISPLSNEETSSEPAKAQLAAVGLWTDISA 382 (1225)
Q Consensus 308 ~Iv~As~n-~~~VlVa-sgg~Lv~feid~~~L~e---v~~~~l~~eIScLai~~~~~~~~~~~~~~s~~laVG~w~d~tv 382 (1225)
.|.+.+.. +..++.+ .++.|.++++..++... .....-...|.|+++.+- .++++.|.. |++|
T Consensus 96 ~V~~~~~s~d~~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spd-----------g~~l~sgs~-dg~v 163 (357)
T 4g56_B 96 GVTDVAWVSEKGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSD-----------GTQAVSGGK-DFSV 163 (357)
T ss_dssp CEEEEEEETTTEEEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSS-----------SSEEEEEET-TSCE
T ss_pred CEEEEEEcCCCCEEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCC-----------CCEEEEEeC-CCeE
Confidence 46666654 5566666 57888888776542211 111223567999998752 467888887 9999
Q ss_pred EEEeCCCcceEEeecCCCCCCcccEEEEeeCCeeEEEEEECCCcEEEEEEcCCCCccccceeeeecC--ccceEEEEeeC
Q psy7977 383 RLLSLPSLEEVCKEPLGGEIIPRSILMTCFEGHCYLLVALGDGSMFYFSLDPASGRLTDKKKVTLGT--QPTVLKTFRSL 460 (1225)
Q Consensus 383 ~IlsL~~Le~v~~~~L~~~~~P~SIll~~l~~~~~LlVGl~nG~L~~y~ld~~sg~Ls~~k~~~LG~--~pV~L~~~~~~ 460 (1225)
+||++.+.+.+..-.-. .....++.+.. .+..++..+-.||.+..|.+. +++... ...+.. .++.-..+..
T Consensus 164 ~iwd~~~~~~~~~~~~h-~~~v~~v~~s~-~~~~~~~s~~~dg~v~~wd~~--~~~~~~--~~~~~~~~~~v~~v~~sp- 236 (357)
T 4g56_B 164 KVWDLSQKAVLKSYNAH-SSEVNCVAACP-GKDTIFLSCGEDGRILLWDTR--KPKPAT--RIDFCASDTIPTSVTWHP- 236 (357)
T ss_dssp EEEETTTTEEEEEECCC-SSCEEEEEECT-TCSSCEEEEETTSCEEECCTT--SSSCBC--BCCCTTCCSCEEEEEECT-
T ss_pred EEEECCCCcEEEEEcCC-CCCEEEEEEcc-CCCceeeeeccCCceEEEECC--CCceee--eeeeccccccccchhhhh-
Confidence 99999875544332111 11222333321 133467788899999887653 222111 111111 1122112211
Q ss_pred CceEEEEecC--CcEEEEE-cCCe-eEEeecccccccccccCCCCCCCCeEEEEe-CCeEEEEEEcCCCCeeeEEEeCCC
Q psy7977 461 STTNVFACSD--RPTVIYS-SNHK-LVFSNVNLRQVNHMCSLNAESYPDSLALAT-DSTFTFGTIDEIQKLHIRTVPLGE 535 (1225)
Q Consensus 461 g~~~Vfa~sd--rP~liys-s~g~-l~~~pl~~~~v~~~s~F~se~~p~glv~vs-~~~LrI~~i~~~~~l~ir~IpLg~ 535 (1225)
....+|++|+ .-..+|. ..++ ++........+.+++ |+.. -..-++... ++.++|-.+.. .-..+.+.-..
T Consensus 237 ~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~-~sp~-~~~~lasgs~D~~i~iwd~~~--~~~~~~~~H~~ 312 (357)
T 4g56_B 237 EKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLA-YSYH-SSPFLASISEDCTVAVLDADF--SEVFRDLSHRD 312 (357)
T ss_dssp TSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEE-ECSS-SSCCEEEEETTSCEEEECTTS--CEEEEECCCSS
T ss_pred cccceEEEeecccceeEEECCCCcEeEEEeccceeEEEEE-EcCC-CCCEEEEEeCCCEEEEEECCC--CcEeEECCCCC
Confidence 1123444432 2233333 1222 222222222333222 2211 111233333 46788876543 22334444456
Q ss_pred cccEEEEec-CCCEEEEEE
Q psy7977 536 APRRIAYQE-SSQTFGVIT 553 (1225)
Q Consensus 536 TprrIay~p-~s~~~vV~t 553 (1225)
.++.++++| ..+.++.+.
T Consensus 313 ~V~~vafsP~d~~~l~s~s 331 (357)
T 4g56_B 313 FVTGVAWSPLDHSKFTTVG 331 (357)
T ss_dssp CEEEEEECSSSTTEEEEEE
T ss_pred CEEEEEEeCCCCCEEEEEc
Confidence 789999999 466665554
No 69
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=95.45 E-value=0.76 Score=53.18 Aligned_cols=77 Identities=10% Similarity=0.001 Sum_probs=50.0
Q ss_pred cCceeEEEEeccCCCCCCCCccccCcEEEEEEecCCeEEEEeCCCcceEEeecCCC-CCCcccEEEEeeCCeeEEEEEEC
Q psy7977 345 LEYEVACLDISPLSNEETSSEPAKAQLAAVGLWTDISARLLSLPSLEEVCKEPLGG-EIIPRSILMTCFEGHCYLLVALG 423 (1225)
Q Consensus 345 l~~eIScLai~~~~~~~~~~~~~~s~~laVG~w~d~tv~IlsL~~Le~v~~~~L~~-~~~P~SIll~~l~~~~~LlVGl~ 423 (1225)
.+..|+||+..|. ...++|.|.. ||+|+||++..-+......+.+ .....+|.+... +..+|+.|-.
T Consensus 118 ~~~~V~~l~~~P~----------~~~~lasGs~-dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~-~~~~l~s~s~ 185 (435)
T 4e54_B 118 FDRRATSLAWHPT----------HPSTVAVGSK-GGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPL-NTNQFYASSM 185 (435)
T ss_dssp CSSCEEEEEECSS----------CTTCEEEEET-TSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSS-CTTEEEEECS
T ss_pred CCCCEEEEEEeCC----------CCCEEEEEeC-CCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCC-CCCEEEEEeC
Confidence 4567999999763 2467999997 9999999996533222211211 112244554322 2457888999
Q ss_pred CCcEEEEEEc
Q psy7977 424 DGSMFYFSLD 433 (1225)
Q Consensus 424 nG~L~~y~ld 433 (1225)
||.+..+.+.
T Consensus 186 D~~v~iwd~~ 195 (435)
T 4e54_B 186 EGTTRLQDFK 195 (435)
T ss_dssp SSCEEEEETT
T ss_pred CCEEEEeecc
Confidence 9999988764
No 70
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=95.39 E-value=2.1 Score=47.93 Aligned_cols=186 Identities=13% Similarity=0.079 Sum_probs=98.8
Q ss_pred CceeEEEEeccCCCCCCCCccccCcEEEEEEecCCeEEEEeCCCcceEEeecCCC-CCCcccEEEEeeC-CeeEEEEEEC
Q psy7977 346 EYEVACLDISPLSNEETSSEPAKAQLAAVGLWTDISARLLSLPSLEEVCKEPLGG-EIIPRSILMTCFE-GHCYLLVALG 423 (1225)
Q Consensus 346 ~~eIScLai~~~~~~~~~~~~~~s~~laVG~w~d~tv~IlsL~~Le~v~~~~L~~-~~~P~SIll~~l~-~~~~LlVGl~ 423 (1225)
...|.|++..+. ...+++.|.. |++|+||++.+.+......+.. .....++.+. . +..+|+.+..
T Consensus 73 ~~~v~~~~~~~~----------~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~~l~s~~~ 139 (383)
T 3ei3_B 73 DRRVTSLEWHPT----------HPTTVAVGSK-GGDIILWDYDVQNKTSFIQGMGPGDAITGMKFN--QFNTNQLFVSSI 139 (383)
T ss_dssp SSCEEEEEECSS----------CTTEEEEEEB-TSCEEEEETTSTTCEEEECCCSTTCBEEEEEEE--TTEEEEEEEEET
T ss_pred CCCEEEEEECCC----------CCCEEEEEcC-CCeEEEEeCCCcccceeeecCCcCCceeEEEeC--CCCCCEEEEEeC
Confidence 577899998762 2368999998 9999999998655443332210 1122233332 2 3578999999
Q ss_pred CCcEEEEEEcCCCCccccceeeeecC----ccceEEEEeeCCceEEEEec-CCcEEEEEcCCeeEEe-eccccccccccc
Q psy7977 424 DGSMFYFSLDPASGRLTDKKKVTLGT----QPTVLKTFRSLSTTNVFACS-DRPTVIYSSNHKLVFS-NVNLRQVNHMCS 497 (1225)
Q Consensus 424 nG~L~~y~ld~~sg~Ls~~k~~~LG~----~pV~L~~~~~~g~~~Vfa~s-drP~liyss~g~l~~~-pl~~~~v~~~s~ 497 (1225)
||.+..+.+.. ..+ ..+.+. .++.-..+..++. .+++.+ +....++.-+++.... .-....+.++ .
T Consensus 140 d~~i~iwd~~~--~~~----~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~h~~~v~~~-~ 211 (383)
T 3ei3_B 140 RGATTLRDFSG--SVI----QVFAKTDSWDYWYCCVDVSVSRQ-MLATGDSTGRLLLLGLDGHEIFKEKLHKAKVTHA-E 211 (383)
T ss_dssp TTEEEEEETTS--CEE----EEEECCCCSSCCEEEEEEETTTT-EEEEEETTSEEEEEETTSCEEEEEECSSSCEEEE-E
T ss_pred CCEEEEEECCC--Cce----EEEeccCCCCCCeEEEEECCCCC-EEEEECCCCCEEEEECCCCEEEEeccCCCcEEEE-E
Confidence 99999988762 111 111111 2233323322222 222222 2222333322221111 1111112211 1
Q ss_pred CCCCCCCCeEEEE-eCCeEEEEEEcCCC--CeeeEEEeCCCcccEEEEec-CCCEEEEEE
Q psy7977 498 LNAESYPDSLALA-TDSTFTFGTIDEIQ--KLHIRTVPLGEAPRRIAYQE-SSQTFGVIT 553 (1225)
Q Consensus 498 F~se~~p~glv~v-s~~~LrI~~i~~~~--~l~ir~IpLg~TprrIay~p-~s~~~vV~t 553 (1225)
|+.. .+.-++.. .++.+++..+.... .-..+.+.-...+..++++| ..+.++.++
T Consensus 212 ~~~~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~ 270 (383)
T 3ei3_B 212 FNPR-CDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTD 270 (383)
T ss_dssp ECSS-CTTEEEEEETTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEEEE
T ss_pred ECCC-CCCEEEEEeCCCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEEEEc
Confidence 2211 11123333 35689999887643 34555567778999999999 888877776
No 71
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=95.38 E-value=4.5 Score=45.14 Aligned_cols=259 Identities=11% Similarity=0.110 Sum_probs=131.2
Q ss_pred eEEEEeecCCeEEEEEeeCCCCCCCceEEEeeeeccccceeeEEeeccccCCccEEEEEecCCCccEEEEeecceeeEEE
Q psy7977 132 VVFVGSRLGDSQLVKLNRSPDENGTYVSVMESFTNLAPIIDMVVVDLERQGQGQLVTCSGGFKEGSLRIIRNGIGIEEHA 211 (1225)
Q Consensus 132 ~LFvGS~~GDS~L~~i~~~~ddd~~~l~v~d~l~NlgPI~D~~v~d~~~~~~~qLva~sG~g~~GsLrilR~GI~~~~~~ 211 (1225)
++|+.+ ..|+.+..|.... -+++..+..-..+..+++.. ....|+++++ .+|.++++.-.= -+.+.
T Consensus 3 ~l~vs~-~~d~~v~v~d~~~------~~~~~~~~~~~~~~~~~~s~----dg~~l~~~~~--~d~~i~v~d~~~-~~~~~ 68 (391)
T 1l0q_A 3 FAYIAN-SESDNISVIDVTS------NKVTATIPVGSNPMGAVISP----DGTKVYVANA--HSNDVSIIDTAT-NNVIA 68 (391)
T ss_dssp EEEEEE-TTTTEEEEEETTT------TEEEEEEECSSSEEEEEECT----TSSEEEEEEG--GGTEEEEEETTT-TEEEE
T ss_pred EEEEEc-CCCCEEEEEECCC------CeEEEEeecCCCcceEEECC----CCCEEEEECC--CCCeEEEEECCC-CeEEE
Confidence 444433 3455666665432 25556666666666666532 1223444432 357888876421 22334
Q ss_pred EeeCCCcceEeEeeeCCCCCCccEEEEEcCCceEEEEEcCc--e-eeeeccCCcccccCeEEEEeeCCCeEEEEc---cC
Q psy7977 212 CIDLPGIKGIWALSIGSPKNLDNTLVLSFVGHTRVLTLSGA--E-VEETEMGGFTSDQQTFYCGNVDPRTVLQVT---PS 285 (1225)
Q Consensus 212 s~eLpgv~~iWtl~~~~~~~~d~yLVlSf~~~T~Vl~i~ge--~-veEv~~sgF~~~~~TL~ag~l~~~~iVQVT---~~ 285 (1225)
.+..++ .+..+.... ...+|+++-.....|..++-+ + +...... ..-..+.--.++..+=++ .+
T Consensus 69 ~~~~~~--~v~~~~~sp---dg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~-----~~~~~~~~s~dg~~l~~~~~~~~ 138 (391)
T 1l0q_A 69 TVPAGS--SPQGVAVSP---DGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-----KSPLGLALSPDGKKLYVTNNGDK 138 (391)
T ss_dssp EEECSS--SEEEEEECT---TSSEEEEEETTTTEEEEEETTTTEEEEEEECS-----SSEEEEEECTTSSEEEEEETTTT
T ss_pred EEECCC--CccceEECC---CCCEEEEEECCCCEEEEEECCCCeEEEEEeCC-----CCcceEEECCCCCEEEEEeCCCC
Confidence 444443 444444432 345676654432333333322 1 2221111 000111111223222222 34
Q ss_pred cEEEEecCCcceeeeecCCCCCcEEEEEec--CCEEEEE--ECCeEEEEEeeccceeEEeeeccCceeEEEEeccCCCCC
Q psy7977 286 AAILISTESKARVSSWEPPNGKSISVVSCN--KNQVLCA--TGCDVYYLEVHGSEIKQLAHRALEYEVACLDISPLSNEE 361 (1225)
Q Consensus 286 ~IRli~~~~~~~i~eW~~p~g~~Iv~As~n--~~~VlVa--sgg~Lv~feid~~~L~ev~~~~l~~eIScLai~~~~~~~ 361 (1225)
.|++++...++.+..... +..+...+.. +.+++++ .++.|.++++...+.. ........+.++++.+.
T Consensus 139 ~v~~~d~~~~~~~~~~~~--~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~--~~~~~~~~~~~~~~~~~---- 210 (391)
T 1l0q_A 139 TVSVINTVTKAVINTVSV--GRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVI--DTVKVEAAPSGIAVNPE---- 210 (391)
T ss_dssp EEEEEETTTTEEEEEEEC--CSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEE--EEEECSSEEEEEEECTT----
T ss_pred EEEEEECCCCcEEEEEec--CCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEE--EEEecCCCccceEECCC----
Confidence 577777665555544443 2334555544 4567665 4678888877654322 22334567788887652
Q ss_pred CCCccccCcEEEEEEe--cCCeEEEEeCCCcceEEeecCCCCCCcccEEEEeeCCeeEEEEE-ECCCcEEEEEEc
Q psy7977 362 TSSEPAKAQLAAVGLW--TDISARLLSLPSLEEVCKEPLGGEIIPRSILMTCFEGHCYLLVA-LGDGSMFYFSLD 433 (1225)
Q Consensus 362 ~~~~~~~s~~laVG~w--~d~tv~IlsL~~Le~v~~~~L~~~~~P~SIll~~l~~~~~LlVG-l~nG~L~~y~ld 433 (1225)
..+++++.. .++.|++|++.+.+.+...... ..|.++.+. ....+|++. ..+|.+..|.+.
T Consensus 211 -------g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~--~~~~~~~~s--~dg~~l~~s~~~d~~v~v~d~~ 274 (391)
T 1l0q_A 211 -------GTKAYVTNVDKYFNTVSMIDTGTNKITARIPVG--PDPAGIAVT--PDGKKVYVALSFXNTVSVIDTA 274 (391)
T ss_dssp -------SSEEEEEEECSSCCEEEEEETTTTEEEEEEECC--SSEEEEEEC--TTSSEEEEEETTTTEEEEEETT
T ss_pred -------CCEEEEEecCcCCCcEEEEECCCCeEEEEEecC--CCccEEEEc--cCCCEEEEEcCCCCEEEEEECC
Confidence 457888875 5899999999876554433332 234444433 234466544 668888777654
No 72
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=95.37 E-value=1.1 Score=50.96 Aligned_cols=70 Identities=13% Similarity=0.220 Sum_probs=46.6
Q ss_pred cEEEEEec--CCEEEEE-ECCeEEEEEeeccceeEEeeeccCceeEEEEeccCCCCCCCCccccCcEEEEEEecCCeEEE
Q psy7977 308 SISVVSCN--KNQVLCA-TGCDVYYLEVHGSEIKQLAHRALEYEVACLDISPLSNEETSSEPAKAQLAAVGLWTDISARL 384 (1225)
Q Consensus 308 ~Iv~As~n--~~~VlVa-sgg~Lv~feid~~~L~ev~~~~l~~eIScLai~~~~~~~~~~~~~~s~~laVG~w~d~tv~I 384 (1225)
.|.+.++. +.+++.+ .++.|.++++...+....-...-...|+|++++|- .+++|-|.+ |++|+|
T Consensus 271 ~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpd-----------g~~laS~S~-D~tvrv 338 (365)
T 4h5i_A 271 GITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPD-----------STYVASVSA-ANTIHI 338 (365)
T ss_dssp CEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTT-----------SCEEEEEET-TSEEEE
T ss_pred CeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCC-----------CCEEEEEeC-CCeEEE
Confidence 46665554 3455555 57889888876543221111113567999999762 467888887 999999
Q ss_pred EeCCC
Q psy7977 385 LSLPS 389 (1225)
Q Consensus 385 lsL~~ 389 (1225)
|++|.
T Consensus 339 w~ip~ 343 (365)
T 4h5i_A 339 IKLPL 343 (365)
T ss_dssp EECCT
T ss_pred EEcCC
Confidence 99974
No 73
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=95.27 E-value=3.9 Score=43.66 Aligned_cols=215 Identities=10% Similarity=0.021 Sum_probs=109.0
Q ss_pred cEEEEEe-cCCEEEEE-ECCeEEEEEeeccceeEEeeeccCceeEEEEeccCCCCCCCCccccCcEEEEEEecCCeEEEE
Q psy7977 308 SISVVSC-NKNQVLCA-TGCDVYYLEVHGSEIKQLAHRALEYEVACLDISPLSNEETSSEPAKAQLAAVGLWTDISARLL 385 (1225)
Q Consensus 308 ~Iv~As~-n~~~VlVa-sgg~Lv~feid~~~L~ev~~~~l~~eIScLai~~~~~~~~~~~~~~s~~laVG~w~d~tv~Il 385 (1225)
.|.+.+. ++++++.+ .++.|.++++......... ......|.|++..+- ..++++|.. |+.+++|
T Consensus 20 ~v~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~-~~~~~~v~~~~~~~~-----------~~~l~~~~~-dg~i~~~ 86 (313)
T 3odt_A 20 DVRDVVAVDDSKVASVSRDGTVRLWSKDDQWLGTVV-YTGQGFLNSVCYDSE-----------KELLLFGGK-DTMINGV 86 (313)
T ss_dssp CEEEEEEEETTEEEEEETTSEEEEEEESSSEEEEEE-EECSSCEEEEEEETT-----------TTEEEEEET-TSCEEEE
T ss_pred CcEEEEecCCCEEEEEEcCCcEEEEECCCCEEEEEe-ecCCccEEEEEECCC-----------CCEEEEecC-CCeEEEE
Confidence 4665554 45566655 5789999988655333221 223678899998762 568888887 9999999
Q ss_pred eCCCcc---eEEeecCCCCCCcccEEEEeeCCeeEEEEEECCCcEEEEEEcCCCCccccceeeeecCccceEEEEeeCCc
Q psy7977 386 SLPSLE---EVCKEPLGGEIIPRSILMTCFEGHCYLLVALGDGSMFYFSLDPASGRLTDKKKVTLGTQPTVLKTFRSLST 462 (1225)
Q Consensus 386 sL~~Le---~v~~~~L~~~~~P~SIll~~l~~~~~LlVGl~nG~L~~y~ld~~sg~Ls~~k~~~LG~~pV~L~~~~~~g~ 462 (1225)
++.+.. .+....-. .....++.+ . ..+|+.|..||.+..|. .++.. ........++.-..+.....
T Consensus 87 ~~~~~~~~~~~~~~~~~-~~~i~~~~~---~-~~~l~~~~~d~~i~~~d----~~~~~--~~~~~~~~~v~~~~~~~~~~ 155 (313)
T 3odt_A 87 PLFATSGEDPLYTLIGH-QGNVCSLSF---Q-DGVVISGSWDKTAKVWK----EGSLV--YNLQAHNASVWDAKVVSFSE 155 (313)
T ss_dssp ETTCCTTSCC-CEECCC-SSCEEEEEE---E-TTEEEEEETTSEEEEEE----TTEEE--EEEECCSSCEEEEEEEETTT
T ss_pred EeeecCCCCcccchhhc-ccCEEEEEe---c-CCEEEEEeCCCCEEEEc----CCcEE--EecccCCCceeEEEEccCCC
Confidence 996532 12111100 111223333 2 45899999999999987 12111 11111223332222222112
Q ss_pred eEEEEec-CCcEEEEEcCCeeEEeec-ccccccccccCCCCCCCCeEEEE-eCCeEEEEEEcCCCCeeeEEEe-CCCccc
Q psy7977 463 TNVFACS-DRPTVIYSSNHKLVFSNV-NLRQVNHMCSLNAESYPDSLALA-TDSTFTFGTIDEIQKLHIRTVP-LGEAPR 538 (1225)
Q Consensus 463 ~~Vfa~s-drP~liyss~g~l~~~pl-~~~~v~~~s~F~se~~p~glv~v-s~~~LrI~~i~~~~~l~ir~Ip-Lg~Tpr 538 (1225)
..+++.+ +....+|........... ....+.++ .|+... .++.. .++.+++..+.... .++++. -...+.
T Consensus 156 ~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~-~~~~~~---~~~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~i~ 229 (313)
T 3odt_A 156 NKFLTASADKTIKLWQNDKVIKTFSGIHNDVVRHL-AVVDDG---HFISCSNDGLIKLVDMHTGD--VLRTYEGHESFVY 229 (313)
T ss_dssp TEEEEEETTSCEEEEETTEEEEEECSSCSSCEEEE-EEEETT---EEEEEETTSEEEEEETTTCC--EEEEEECCSSCEE
T ss_pred CEEEEEECCCCEEEEecCceEEEEeccCcccEEEE-EEcCCC---eEEEccCCCeEEEEECCchh--hhhhhhcCCceEE
Confidence 2222222 333344442222222211 11222222 122111 13333 35678888775432 334444 346788
Q ss_pred EEEEecCCCEEEEEE
Q psy7977 539 RIAYQESSQTFGVIT 553 (1225)
Q Consensus 539 rIay~p~s~~~vV~t 553 (1225)
.++++|... ++.+.
T Consensus 230 ~~~~~~~~~-l~~~~ 243 (313)
T 3odt_A 230 CIKLLPNGD-IVSCG 243 (313)
T ss_dssp EEEECTTSC-EEEEE
T ss_pred EEEEecCCC-EEEEe
Confidence 999999884 44443
No 74
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=95.24 E-value=3.4 Score=46.52 Aligned_cols=111 Identities=12% Similarity=0.089 Sum_probs=69.0
Q ss_pred EEEEEec-CCEEEEE-ECCeEEEEEeecccee-EEe--eeccCceeEEEEeccCCCCCCCCccccCcEEEEEEecCCeEE
Q psy7977 309 ISVVSCN-KNQVLCA-TGCDVYYLEVHGSEIK-QLA--HRALEYEVACLDISPLSNEETSSEPAKAQLAAVGLWTDISAR 383 (1225)
Q Consensus 309 Iv~As~n-~~~VlVa-sgg~Lv~feid~~~L~-ev~--~~~l~~eIScLai~~~~~~~~~~~~~~s~~laVG~w~d~tv~ 383 (1225)
|.+.+.. +++++.+ .++.|.+.+++.++.. ... ...-...|.|+++.+- .++++.|.. |++|+
T Consensus 85 v~~~~~s~d~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spd-----------g~~l~sgs~-d~~i~ 152 (344)
T 4gqb_B 85 VADLTWVGERGILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSS-----------GTQAVSGSK-DICIK 152 (344)
T ss_dssp EEEEEEETTTEEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTT-----------SSEEEEEET-TSCEE
T ss_pred EEEEEEeCCCeEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCC-----------CCEEEEEeC-CCeEE
Confidence 5555544 5666666 6789999998866422 222 1223567999998752 467888887 99999
Q ss_pred EEeCCCcceEEeecCCCCCCcccEEEEeeCCeeEEEEEECCCcEEEEEEc
Q psy7977 384 LLSLPSLEEVCKEPLGGEIIPRSILMTCFEGHCYLLVALGDGSMFYFSLD 433 (1225)
Q Consensus 384 IlsL~~Le~v~~~~L~~~~~P~SIll~~l~~~~~LlVGl~nG~L~~y~ld 433 (1225)
||++.+-+.+....-. .....++.+.. .+...|..|-.||.+..|.+.
T Consensus 153 iwd~~~~~~~~~~~~h-~~~V~~~~~~~-~~~~~l~s~s~D~~v~iwd~~ 200 (344)
T 4gqb_B 153 VWDLAQQVVLSSYRAH-AAQVTCVAASP-HKDSVFLSCSEDNRILLWDTR 200 (344)
T ss_dssp EEETTTTEEEEEECCC-SSCEEEEEECS-SCTTEEEEEETTSCEEEEETT
T ss_pred EEECCCCcEEEEEcCc-CCceEEEEecC-CCCCceeeecccccccccccc
Confidence 9999875544331100 11112333221 123456778899999888764
No 75
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=95.22 E-value=4.7 Score=44.33 Aligned_cols=274 Identities=11% Similarity=0.025 Sum_probs=142.3
Q ss_pred CeEEEEEcCCCEEEEEEEeCcccCCceeeeecEEEEe-cccCcceeEEEecCC-eEEEEeecCCeEEEEEeeCCCCCCCc
Q psy7977 80 ERYLLGDLAGRLFMLLLEKEEKMDGTFSVKEPKVELL-GEISIPECLTYLDNG-VVFVGSRLGDSQLVKLNRSPDENGTY 157 (1225)
Q Consensus 80 ~~~LL~~e~G~Ly~l~l~~d~~~~Gr~~Vs~i~i~~~-~tis~~SsL~~L~~g-~LFvGS~~GDS~L~~i~~~~ddd~~~ 157 (1225)
..++.+..+|.++...+... ... .+..+ +......++....++ +|+.|+..|.=.++.+.... .
T Consensus 21 ~~l~~~~~d~~v~i~~~~~~-------~~~--~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~-----~ 86 (372)
T 1k8k_C 21 TQIAICPNNHEVHIYEKSGN-------KWV--QVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRT-----W 86 (372)
T ss_dssp SEEEEECSSSEEEEEEEETT-------EEE--EEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTE-----E
T ss_pred CEEEEEeCCCEEEEEeCCCC-------cEE--eeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCe-----e
Confidence 34556668898888776522 111 11112 223344677766554 67777766665666654321 1
Q ss_pred eEEEeeeeccccceeeEEeeccccCCccEEEEEecCCCccEEE--EeecceeeEEEEeeCCCcceEeEeeeCCCCCCccE
Q psy7977 158 VSVMESFTNLAPIIDMVVVDLERQGQGQLVTCSGGFKEGSLRI--IRNGIGIEEHACIDLPGIKGIWALSIGSPKNLDNT 235 (1225)
Q Consensus 158 l~v~d~l~NlgPI~D~~v~d~~~~~~~qLva~sG~g~~GsLri--lR~GI~~~~~~s~eLpgv~~iWtl~~~~~~~~d~y 235 (1225)
.........-++|.++.+.. ..+.+++++ .+|.+++ ++.+-.......+..+.-..++.+.... ...+
T Consensus 87 ~~~~~~~~~~~~v~~~~~~~-----~~~~l~~~~--~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~~~ 156 (372)
T 1k8k_C 87 KPTLVILRINRAARCVRWAP-----NEKKFAVGS--GSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHP---NSVL 156 (372)
T ss_dssp EEEEECCCCSSCEEEEEECT-----TSSEEEEEE--TTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECT---TSSE
T ss_pred eeeEEeecCCCceeEEEECC-----CCCEEEEEe--CCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcC---CCCE
Confidence 11222233456788777643 223444443 3577777 4444333333333333334566666543 2456
Q ss_pred EEEEcCCce-EEEEEc-------------------CceeeeeccCCcccccCeEEEEee-CCC-eEEEEc-cCcEEEEec
Q psy7977 236 LVLSFVGHT-RVLTLS-------------------GAEVEETEMGGFTSDQQTFYCGNV-DPR-TVLQVT-PSAAILIST 292 (1225)
Q Consensus 236 LVlSf~~~T-~Vl~i~-------------------ge~veEv~~sgF~~~~~TL~ag~l-~~~-~iVQVT-~~~IRli~~ 292 (1225)
|+.+..+.+ .++.+. ++.+.... .....+.+-.+ .++ .++=.. ...|++++.
T Consensus 157 l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~ 231 (372)
T 1k8k_C 157 LAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESS-----SSCGWVHGVCFSANGSRVAWVSHDSTVCLADA 231 (372)
T ss_dssp EEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECC-----CCSSCEEEEEECSSSSEEEEEETTTEEEEEEG
T ss_pred EEEEcCCCCEEEEEcccccccccccccccccccchhhheEecC-----CCCCeEEEEEECCCCCEEEEEeCCCEEEEEEC
Confidence 666555544 466542 11111111 11112222222 222 333333 345888887
Q ss_pred CCcceeeeecCCCCCcEEEEEec-CCEEEEE-ECCeEEEEEeec--cceeEE----------------------------
Q psy7977 293 ESKARVSSWEPPNGKSISVVSCN-KNQVLCA-TGCDVYYLEVHG--SEIKQL---------------------------- 340 (1225)
Q Consensus 293 ~~~~~i~eW~~p~g~~Iv~As~n-~~~VlVa-sgg~Lv~feid~--~~L~ev---------------------------- 340 (1225)
..++.+..+.... ..|...+.. +..++++ .++.+.++++.. +.+..+
T Consensus 232 ~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (372)
T 1k8k_C 232 DKKMAVATLASET-LPLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKAS 310 (372)
T ss_dssp GGTTEEEEEECSS-CCEEEEEEEETTEEEEEETTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC-
T ss_pred CCCceeEEEccCC-CCeEEEEEecCCCEEEEEeCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccc
Confidence 7666676766433 356666665 4455554 788899998876 322111
Q ss_pred --------ee--eccCceeEEEEeccCCCCCCCCccccCcEEEEEEecCCeEEEEeCCCcc
Q psy7977 341 --------AH--RALEYEVACLDISPLSNEETSSEPAKAQLAAVGLWTDISARLLSLPSLE 391 (1225)
Q Consensus 341 --------~~--~~l~~eIScLai~~~~~~~~~~~~~~s~~laVG~w~d~tv~IlsL~~Le 391 (1225)
.. ..-...|+|++..+. ++ ....+++.|.. |++|++|++.+++
T Consensus 311 ~~~~~~~~~~~~~~h~~~v~~~~~~~~-~g------~~~~~l~s~~~-Dg~i~~W~~~~~~ 363 (372)
T 1k8k_C 311 SEGSAAAGAGLDSLHKNSVSQISVLSG-GK------AKCSQFCTTGM-DGGMSIWDVRSLE 363 (372)
T ss_dssp --------CCCSSSSSSCEEEEEEEES-TT------TSCSEEEEEET-TSEEEEEEHHHHH
T ss_pred cccCccccccccccccCCcceeEEecC-CC------cceeeEEEecC-CCceEEEEecChh
Confidence 10 122467888886532 11 01268888887 9999999997543
No 76
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=95.19 E-value=4.2 Score=43.61 Aligned_cols=118 Identities=12% Similarity=0.050 Sum_probs=71.2
Q ss_pred CcEEEEEec--CCEEEEE-ECCeEEEEEeeccc--eeEEee-eccCceeEEEEeccCCCCCCCCccccCcEEEEEEecCC
Q psy7977 307 KSISVVSCN--KNQVLCA-TGCDVYYLEVHGSE--IKQLAH-RALEYEVACLDISPLSNEETSSEPAKAQLAAVGLWTDI 380 (1225)
Q Consensus 307 ~~Iv~As~n--~~~VlVa-sgg~Lv~feid~~~--L~ev~~-~~l~~eIScLai~~~~~~~~~~~~~~s~~laVG~w~d~ 380 (1225)
..|.+.+.+ +++++.+ .++.|.+++++.+. ...... ..-...|.|++..+.. ...+++.|.. |+
T Consensus 12 ~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---------d~~~l~s~~~-dg 81 (351)
T 3f3f_A 12 DLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPE---------YGRIIASASY-DK 81 (351)
T ss_dssp SCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGG---------GCSEEEEEET-TS
T ss_pred cceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCC---------CCCEEEEEcC-CC
Confidence 356666654 4455555 57889999887542 222222 2345789999986521 2568888887 99
Q ss_pred eEEEEeCCCcce-------EEeecCCC-CCCcccEEEEeeCCeeEEEEEECCCcEEEEEEcC
Q psy7977 381 SARLLSLPSLEE-------VCKEPLGG-EIIPRSILMTCFEGHCYLLVALGDGSMFYFSLDP 434 (1225)
Q Consensus 381 tv~IlsL~~Le~-------v~~~~L~~-~~~P~SIll~~l~~~~~LlVGl~nG~L~~y~ld~ 434 (1225)
+|++|++...+. .....+.. .....++.+..-....+|+.+..||.+..|.+..
T Consensus 82 ~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~ 143 (351)
T 3f3f_A 82 TVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALE 143 (351)
T ss_dssp CEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSS
T ss_pred eEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCC
Confidence 999999975321 01111210 1122333333211157899999999999998754
No 77
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=95.14 E-value=4.5 Score=43.78 Aligned_cols=278 Identities=11% Similarity=0.075 Sum_probs=137.5
Q ss_pred eeEEEecC--CeEEEEeecCCeEEEEEeeCCCCCCCceEEEeeeec-cccceeeEEeeccccCCccEEEEEecCCCccEE
Q psy7977 123 ECLTYLDN--GVVFVGSRLGDSQLVKLNRSPDENGTYVSVMESFTN-LAPIIDMVVVDLERQGQGQLVTCSGGFKEGSLR 199 (1225)
Q Consensus 123 SsL~~L~~--g~LFvGS~~GDS~L~~i~~~~ddd~~~l~v~d~l~N-lgPI~D~~v~d~~~~~~~qLva~sG~g~~GsLr 199 (1225)
+|++.-.+ .+|+-||..|-=.++.+.... ...-.....+.. -++|.++.+.. ..+.+++++ .+|.++
T Consensus 42 ~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~---~~~~~~~~~l~~h~~~V~~~~~s~-----dg~~l~s~~--~d~~i~ 111 (340)
T 4aow_A 42 TQIATTPQFPDMILSASRDKTIIMWKLTRDE---TNYGIPQRALRGHSHFVSDVVISS-----DGQFALSGS--WDGTLR 111 (340)
T ss_dssp EEEEECTTCTTEEEEEETTSCEEEEEECCSS---SCSEEEEEEECCCSSCEEEEEECT-----TSSEEEEEE--TTSEEE
T ss_pred EEEEEeCCCCCEEEEEcCCCeEEEEECCCCC---cccceeeEEEeCCCCCEEEEEECC-----CCCEEEEEc--ccccce
Confidence 55555432 466667765554555554321 111233344443 47888887743 233444333 467787
Q ss_pred EEeecceeeEEEEeeCCCcceEeEeeeCCCCCCccEEEEEcCCce-EEEEEcCceeeeeccCCcccccCeEEEEee---C
Q psy7977 200 IIRNGIGIEEHACIDLPGIKGIWALSIGSPKNLDNTLVLSFVGHT-RVLTLSGAEVEETEMGGFTSDQQTFYCGNV---D 275 (1225)
Q Consensus 200 ilR~GI~~~~~~s~eLpgv~~iWtl~~~~~~~~d~yLVlSf~~~T-~Vl~i~ge~veEv~~sgF~~~~~TL~ag~l---~ 275 (1225)
+....-............... ..... ....+|+....+.+ .++.+.+.........+- ...+.+..+ +
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~--~~~~~---~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~---~~~v~~~~~~~~~ 183 (340)
T 4aow_A 112 LWDLTTGTTTRRFVGHTKDVL--SVAFS---SDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESH---SEWVSCVRFSPNS 183 (340)
T ss_dssp EEETTTTEEEEEEECCSSCEE--EEEEC---TTSSCEEEEETTSCEEEECTTSCEEEEECSSSC---SSCEEEEEECSCS
T ss_pred EEeecccceeeeecCCCCcee--EEEEe---ecCccceeecCCCeEEEEEeCCCceEEEEeccc---cCcccceEEccCC
Confidence 776655444333322222211 11111 12344554433333 343321111111111111 111222222 1
Q ss_pred CC-eEEEEc-cCcEEEEecCCcceeeeecCCCCCcEEEEEec--CCEEEEE-ECCeEEEEEeeccceeEEeeeccCceeE
Q psy7977 276 PR-TVLQVT-PSAAILISTESKARVSSWEPPNGKSISVVSCN--KNQVLCA-TGCDVYYLEVHGSEIKQLAHRALEYEVA 350 (1225)
Q Consensus 276 ~~-~iVQVT-~~~IRli~~~~~~~i~eW~~p~g~~Iv~As~n--~~~VlVa-sgg~Lv~feid~~~L~ev~~~~l~~eIS 350 (1225)
.+ .++-.. ...|++.+....+.+..+... ...|.+.+++ +++++.+ .++.|.++++... ..+....-...+.
T Consensus 184 ~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h-~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~--~~~~~~~~~~~v~ 260 (340)
T 4aow_A 184 SNPIIVSCGWDKLVKVWNLANCKLKTNHIGH-TGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEG--KHLYTLDGGDIIN 260 (340)
T ss_dssp SSCEEEEEETTSCEEEEETTTTEEEEEECCC-SSCEEEEEECTTSSEEEEEETTCEEEEEETTTT--EEEEEEECSSCEE
T ss_pred CCcEEEEEcCCCEEEEEECCCCceeeEecCC-CCcEEEEEECCCCCEEEEEeCCCeEEEEEeccC--ceeeeecCCceEE
Confidence 11 122221 345788887765566665533 3357777765 4455555 5789988887644 2223333456788
Q ss_pred EEEeccCCCCCCCCccccCcEEEEEEecCCeEEEEeCCCcceEEeec---CC--CCCCcccEEEEee-CCeeEEEEEECC
Q psy7977 351 CLDISPLSNEETSSEPAKAQLAAVGLWTDISARLLSLPSLEEVCKEP---LG--GEIIPRSILMTCF-EGHCYLLVALGD 424 (1225)
Q Consensus 351 cLai~~~~~~~~~~~~~~s~~laVG~w~d~tv~IlsL~~Le~v~~~~---L~--~~~~P~SIll~~l-~~~~~LlVGl~n 424 (1225)
+++..+ ...++.+.. |++|+||++.....+.... .. ....+..|.-+.+ ....+|+.|-.|
T Consensus 261 ~~~~~~------------~~~~~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D 327 (340)
T 4aow_A 261 ALCFSP------------NRYWLCAAT-GPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTD 327 (340)
T ss_dssp EEEECS------------SSSEEEEEE-TTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETT
T ss_pred eeecCC------------CCceeeccC-CCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCC
Confidence 888754 123555666 9999999998644433211 10 0112223332333 345789999999
Q ss_pred CcEEEEEEcC
Q psy7977 425 GSMFYFSLDP 434 (1225)
Q Consensus 425 G~L~~y~ld~ 434 (1225)
|.+..|++..
T Consensus 328 g~v~iW~~~t 337 (340)
T 4aow_A 328 NLVRVWQVTI 337 (340)
T ss_dssp SCEEEEEEEC
T ss_pred CEEEEEeCCC
Confidence 9999998763
No 78
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=95.14 E-value=4.6 Score=43.87 Aligned_cols=207 Identities=14% Similarity=0.132 Sum_probs=108.9
Q ss_pred CcEEEEecCCcceeeeecCCCCCcEEEEEe--cCCEEEEE-E-CCeEEEEEeeccceeEEeeeccCceeEE-EEeccCCC
Q psy7977 285 SAAILISTESKARVSSWEPPNGKSISVVSC--NKNQVLCA-T-GCDVYYLEVHGSEIKQLAHRALEYEVAC-LDISPLSN 359 (1225)
Q Consensus 285 ~~IRli~~~~~~~i~eW~~p~g~~Iv~As~--n~~~VlVa-s-gg~Lv~feid~~~L~ev~~~~l~~eISc-Lai~~~~~ 359 (1225)
+.|++++.++++.+..+..+. ... ..++ .+++++++ . ++.|..+.+..+++.. ........+.. +++.+
T Consensus 20 ~~v~~~d~~~~~~~~~~~~~~-~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~-~~~~~~~~~~~~~~~s~--- 93 (331)
T 3u4y_A 20 RRISFFSTDTLEILNQITLGY-DFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKV-VAIQEGQSSMADVDITP--- 93 (331)
T ss_dssp TEEEEEETTTCCEEEEEECCC-CEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEE-EEEEECSSCCCCEEECT---
T ss_pred CeEEEEeCcccceeeeEEccC-Ccc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeE-EecccCCCCccceEECC---
Confidence 456667766555555555432 233 3333 34567766 3 5688888776655411 11222233333 66654
Q ss_pred CCCCCccccCcEEEEEEecCC--eEEEEeCCCcceEEeecCCCCCCcccEEEEeeCCeeEEEE-EECCCc-EEEEEEcCC
Q psy7977 360 EETSSEPAKAQLAAVGLWTDI--SARLLSLPSLEEVCKEPLGGEIIPRSILMTCFEGHCYLLV-ALGDGS-MFYFSLDPA 435 (1225)
Q Consensus 360 ~~~~~~~~~s~~laVG~w~d~--tv~IlsL~~Le~v~~~~L~~~~~P~SIll~~l~~~~~LlV-Gl~nG~-L~~y~ld~~ 435 (1225)
..++++++.+.++ +|.+|++.+.+.+..... ...|.++.+.. ...+|++ +..++. +..|.++.
T Consensus 94 --------dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~--~~~~~~~~~sp--dg~~l~~~~~~~~~~i~~~~~~~- 160 (331)
T 3u4y_A 94 --------DDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPI--PYDAVGIAISP--NGNGLILIDRSSANTVRRFKIDA- 160 (331)
T ss_dssp --------TSSEEEECCCSSSSCEEEEEETTTTEEEEEEEC--CTTEEEEEECT--TSSCEEEEEETTTTEEEEEEECT-
T ss_pred --------CCCEEEEecCCCCcccEEEEECCCCCeEEEEEC--CCCccceEECC--CCCEEEEEecCCCceEEEEEECC-
Confidence 2456666665224 999999987665544333 23455555543 2233444 466688 88999884
Q ss_pred CCccccceeeeecCccceEEEEeeCCceEEEEecCCcE-EEEEcCCeeEEeecccccccccccCCCCCCCCeEEEEe--C
Q psy7977 436 SGRLTDKKKVTLGTQPTVLKTFRSLSTTNVFACSDRPT-VIYSSNHKLVFSNVNLRQVNHMCSLNAESYPDSLALAT--D 512 (1225)
Q Consensus 436 sg~Ls~~k~~~LG~~pV~L~~~~~~g~~~Vfa~sdrP~-liyss~g~l~~~pl~~~~v~~~s~F~se~~p~glv~vs--~ 512 (1225)
.+.+.+.... ++..+..|. +.++..++. +.++. +
T Consensus 161 ~g~~~~~~~~-------------------~~~~~~~~~~~~~spdg~~------------------------l~v~~~~~ 197 (331)
T 3u4y_A 161 DGVLFDTGQE-------------------FISGGTRPFNITFTPDGNF------------------------AFVANLIG 197 (331)
T ss_dssp TCCEEEEEEE-------------------EECSSSSEEEEEECTTSSE------------------------EEEEETTT
T ss_pred CCcEeecCCc-------------------cccCCCCccceEECCCCCE------------------------EEEEeCCC
Confidence 2333221100 011122221 112222221 11111 2
Q ss_pred CeEEEEEEcCCCC-eeeEEEeCCCcccEEEEecCCCEEEEEE
Q psy7977 513 STFTFGTIDEIQK-LHIRTVPLGEAPRRIAYQESSQTFGVIT 553 (1225)
Q Consensus 513 ~~LrI~~i~~~~~-l~ir~IpLg~TprrIay~p~s~~~vV~t 553 (1225)
+.+++..+..... -.++.++.+..|+.++++|..+.++++.
T Consensus 198 ~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~ 239 (331)
T 3u4y_A 198 NSIGILETQNPENITLLNAVGTNNLPGTIVVSRDGSTVYVLT 239 (331)
T ss_dssp TEEEEEECSSTTSCEEEEEEECSSCCCCEEECTTSSEEEEEC
T ss_pred CeEEEEECCCCcccceeeeccCCCCCceEEECCCCCEEEEEE
Confidence 3455555443222 2367888899999999999999777764
No 79
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=95.05 E-value=5.2 Score=43.98 Aligned_cols=219 Identities=13% Similarity=0.062 Sum_probs=108.7
Q ss_pred EEEEEec--CCEEEEE-ECCeEEEEEeeccceeEEeeeccCceeEEEEeccCCCCCCCCccccCcEEEEEEecCCeEEEE
Q psy7977 309 ISVVSCN--KNQVLCA-TGCDVYYLEVHGSEIKQLAHRALEYEVACLDISPLSNEETSSEPAKAQLAAVGLWTDISARLL 385 (1225)
Q Consensus 309 Iv~As~n--~~~VlVa-sgg~Lv~feid~~~L~ev~~~~l~~eIScLai~~~~~~~~~~~~~~s~~laVG~w~d~tv~Il 385 (1225)
|.+++.. +.+++.+ .++.|.++++..++.... -..-...|.|+++.+. ..+++.|.+ |++|++|
T Consensus 68 v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~-~~~h~~~v~~~~~~~~-----------~~~l~s~s~-D~~i~vw 134 (319)
T 3frx_A 68 VQDCTLTADGAYALSASWDKTLRLWDVATGETYQR-FVGHKSDVMSVDIDKK-----------ASMIISGSR-DKTIKVW 134 (319)
T ss_dssp EEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEE-EECCSSCEEEEEECTT-----------SCEEEEEET-TSCEEEE
T ss_pred EEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEE-EccCCCcEEEEEEcCC-----------CCEEEEEeC-CCeEEEE
Confidence 4444443 3344444 478888888765532211 1123467889988652 467888887 9999999
Q ss_pred eCCCcceEEeecCCCCCCcccEEEEeeC----CeeEEEEEECCCcEEEEEEcCCCCccccceeeeec-CccceEEEEeeC
Q psy7977 386 SLPSLEEVCKEPLGGEIIPRSILMTCFE----GHCYLLVALGDGSMFYFSLDPASGRLTDKKKVTLG-TQPTVLKTFRSL 460 (1225)
Q Consensus 386 sL~~Le~v~~~~L~~~~~P~SIll~~l~----~~~~LlVGl~nG~L~~y~ld~~sg~Ls~~k~~~LG-~~pV~L~~~~~~ 460 (1225)
++..-.......- .....++.+...+ +..+|+.|..||.+..+.+.. +++ ...+.| ..++.-..+..+
T Consensus 135 d~~~~~~~~~~~h--~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~--~~~---~~~~~~h~~~v~~~~~sp~ 207 (319)
T 3frx_A 135 TIKGQCLATLLGH--NDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQ--FQI---EADFIGHNSNINTLTASPD 207 (319)
T ss_dssp ETTSCEEEEECCC--SSCEEEEEECCC------CCEEEEEETTSCEEEEETTT--TEE---EEEECCCCSCEEEEEECTT
T ss_pred ECCCCeEEEEecc--CCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCc--chh---heeecCCCCcEEEEEEcCC
Confidence 9964211111100 1111233332211 234789999999999887653 211 112222 123332222222
Q ss_pred CceEEEEec-CCcEEEEEc-CCeeEEeecccccccccccCCCCCCCCeEEEEeCCeEEEEEEcCCCCeeeEEEeC-----
Q psy7977 461 STTNVFACS-DRPTVIYSS-NHKLVFSNVNLRQVNHMCSLNAESYPDSLALATDSTFTFGTIDEIQKLHIRTVPL----- 533 (1225)
Q Consensus 461 g~~~Vfa~s-drP~liyss-~g~l~~~pl~~~~v~~~s~F~se~~p~glv~vs~~~LrI~~i~~~~~l~ir~IpL----- 533 (1225)
| ..+...| +....++.- .++....--....+.+ ..|+.. ...++...++.+++..++... .++.+.-
T Consensus 208 g-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~-~~~sp~--~~~la~~~~~~i~v~~~~~~~--~~~~~~~~~~~~ 281 (319)
T 3frx_A 208 G-TLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFS-LAFSPN--RYWLAAATATGIKVFSLDPQY--LVDDLRPEFAGY 281 (319)
T ss_dssp S-SEEEEEETTCEEEEEETTTTEEEEEEECCSCEEE-EEECSS--SSEEEEEETTEEEEEEETTEE--EEEEECCCCTTC
T ss_pred C-CEEEEEeCCCeEEEEECCCCcEEEEecCCCcEEE-EEEcCC--CCEEEEEcCCCcEEEEeCcCe--eeeccCcccccc
Confidence 2 2222222 233333432 2222111111112221 223322 234566677889998887532 2222221
Q ss_pred ----CCcccEEEEecCCCEEEEEE
Q psy7977 534 ----GEAPRRIAYQESSQTFGVIT 553 (1225)
Q Consensus 534 ----g~TprrIay~p~s~~~vV~t 553 (1225)
...+..++|+|..+.++.+.
T Consensus 282 ~~~~~~~v~~~~~spdg~~l~sg~ 305 (319)
T 3frx_A 282 SKAAEPHAVSLAWSADGQTLFAGY 305 (319)
T ss_dssp CGGGCCCEEEEEECTTSSEEEEEE
T ss_pred ccCcCcceeEEEECCCCCEEEEee
Confidence 12356899999999988876
No 80
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=95.00 E-value=5.9 Score=44.38 Aligned_cols=148 Identities=8% Similarity=-0.042 Sum_probs=89.9
Q ss_pred EEEEeeCCCeEEEEccCcEEEEecCCc-ceeeeecCCCCCcEEEEEecCCEEEEE---ECCeEEEEEeeccc-e------
Q psy7977 269 FYCGNVDPRTVLQVTPSAAILISTESK-ARVSSWEPPNGKSISVVSCNKNQVLCA---TGCDVYYLEVHGSE-I------ 337 (1225)
Q Consensus 269 L~ag~l~~~~iVQVT~~~IRli~~~~~-~~i~eW~~p~g~~Iv~As~n~~~VlVa---sgg~Lv~feid~~~-L------ 337 (1225)
+.+-.+..+.++=+..+.|++++.... +.+..+.. ....++....+++++ .++.|.++++..+. .
T Consensus 103 v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~----~~~~~~~s~~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~ 178 (355)
T 3vu4_A 103 VKDLFLSREFIVVSYGDVISVFKFGNPWKRITDDIR----FGGVCEFSNGLLVYSNEFNLGQIHITKLQSSGSATTQDQG 178 (355)
T ss_dssp EEEEEECSSEEEEEETTEEEEEESSTTCCBSSCCEE----EEEEEEEETTEEEEEESSCTTCEEEEECCC----------
T ss_pred eEEEEEcCCEEEEEEcCEEEEEECCCCceeeEEecc----CCceEEEEccEEEEeCCCcCcEEEEEECCCCCcccccccc
Confidence 444444455566567888888887654 44444433 122333444777775 46889888876432 0
Q ss_pred ------eE-Ee-eeccCceeEEEEeccCCCCCCCCccccCcEEEEEEecCCe-EEEEeCCCcceEEeecCC-CCCCcccE
Q psy7977 338 ------KQ-LA-HRALEYEVACLDISPLSNEETSSEPAKAQLAAVGLWTDIS-ARLLSLPSLEEVCKEPLG-GEIIPRSI 407 (1225)
Q Consensus 338 ------~e-v~-~~~l~~eIScLai~~~~~~~~~~~~~~s~~laVG~w~d~t-v~IlsL~~Le~v~~~~L~-~~~~P~SI 407 (1225)
.+ +. -..-...|+|+++.+- ..+++.|.. |++ |+||++.+.+.+..-.-. ......++
T Consensus 179 ~~~~~~~p~~~~~~~h~~~v~~~~~s~~-----------g~~l~s~s~-d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~ 246 (355)
T 3vu4_A 179 VQQKAILGKGVLIKAHTNPIKMVRLNRK-----------SDMVATCSQ-DGTIIRVFKTEDGVLVREFRRGLDRADVVDM 246 (355)
T ss_dssp --------CCEEECCCSSCEEEEEECTT-----------SSEEEEEET-TCSEEEEEETTTCCEEEEEECTTCCSCEEEE
T ss_pred ccccccCcccEEEEccCCceEEEEECCC-----------CCEEEEEeC-CCCEEEEEECCCCcEEEEEEcCCCCCcEEEE
Confidence 01 11 1123568999998762 468888887 998 999999876655432210 01122233
Q ss_pred EEEeeCCeeEEEEEECCCcEEEEEEcC
Q psy7977 408 LMTCFEGHCYLLVALGDGSMFYFSLDP 434 (1225)
Q Consensus 408 ll~~l~~~~~LlVGl~nG~L~~y~ld~ 434 (1225)
.+. +...+|..|..||.+..|.+..
T Consensus 247 ~~s--~~~~~l~s~s~d~~v~iw~~~~ 271 (355)
T 3vu4_A 247 KWS--TDGSKLAVVSDKWTLHVFEIFN 271 (355)
T ss_dssp EEC--TTSCEEEEEETTCEEEEEESSC
T ss_pred EEC--CCCCEEEEEECCCEEEEEEccC
Confidence 332 2467899999999999998864
No 81
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=94.88 E-value=6.5 Score=44.25 Aligned_cols=271 Identities=11% Similarity=0.037 Sum_probs=135.7
Q ss_pred eEEEec-CCeEEEEeecCCeEEEEEeeCCCCCCCceEEEeeeeccccceeeEEeeccccCCccEEEEEecCCCccEEEEe
Q psy7977 124 CLTYLD-NGVVFVGSRLGDSQLVKLNRSPDENGTYVSVMESFTNLAPIIDMVVVDLERQGQGQLVTCSGGFKEGSLRIIR 202 (1225)
Q Consensus 124 sL~~L~-~g~LFvGS~~GDS~L~~i~~~~ddd~~~l~v~d~l~NlgPI~D~~v~d~~~~~~~qLva~sG~g~~GsLrilR 202 (1225)
++.+-. ..+|+.|+..|.-.++.+... +....+..- ++..+.... ...+.+++++ .+|.+++..
T Consensus 61 ~~~~s~~g~~l~~~~~d~~v~i~d~~~~--------~~~~~~~~~-~~~~~~~~~----~~~~~l~~~~--~dg~i~iwd 125 (420)
T 3vl1_A 61 GNTFEKVGSHLYKARLDGHDFLFNTIIR--------DGSKMLKRA-DYTAVDTAK----LQMRRFILGT--TEGDIKVLD 125 (420)
T ss_dssp TCEEEEEETTEEEEEETTEEEEEECCSE--------ETTTTSCSC-CEEEEEEEC----SSSCEEEEEE--TTSCEEEEC
T ss_pred ceeeeecCCeEEEEEcCCcEEEEEeccc--------ceeeEEecC-CceEEEEEe----cCCCEEEEEE--CCCCEEEEe
Confidence 344433 456888888765555544321 111112221 222222222 1233444432 467888886
Q ss_pred ecceeeEEEEeeCC-CcceEeEeeeCCCCCCccEEEEEcCCce-EEEEEc-CceeeeeccCCcccccCeEEEEee-CCC-
Q psy7977 203 NGIGIEEHACIDLP-GIKGIWALSIGSPKNLDNTLVLSFVGHT-RVLTLS-GAEVEETEMGGFTSDQQTFYCGNV-DPR- 277 (1225)
Q Consensus 203 ~GI~~~~~~s~eLp-gv~~iWtl~~~~~~~~d~yLVlSf~~~T-~Vl~i~-ge~veEv~~sgF~~~~~TL~ag~l-~~~- 277 (1225)
-.-+ .... .+. .-..++.+.... ...+|+....+.+ +++.+. ++.+..... ....+.+-.+ .++
T Consensus 126 ~~~~--~~~~-~~~~h~~~v~~~~~~~---~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~-----h~~~v~~~~~~~~~~ 194 (420)
T 3vl1_A 126 SNFN--LQRE-IDQAHVSEITKLKFFP---SGEALISSSQDMQLKIWSVKDGSNPRTLIG-----HRATVTDIAIIDRGR 194 (420)
T ss_dssp TTSC--EEEE-ETTSSSSCEEEEEECT---TSSEEEEEETTSEEEEEETTTCCCCEEEEC-----CSSCEEEEEEETTTT
T ss_pred CCCc--ceee-ecccccCccEEEEECC---CCCEEEEEeCCCeEEEEeCCCCcCceEEcC-----CCCcEEEEEEcCCCC
Confidence 4311 1111 222 234566666543 2456666555554 355442 222222211 1111222222 222
Q ss_pred eEEEEcc-CcEEEEecCCcceeeeecCC--CCCcEEEEEe-----------------------cCCEEEEE-ECCeEEEE
Q psy7977 278 TVLQVTP-SAAILISTESKARVSSWEPP--NGKSISVVSC-----------------------NKNQVLCA-TGCDVYYL 330 (1225)
Q Consensus 278 ~iVQVT~-~~IRli~~~~~~~i~eW~~p--~g~~Iv~As~-----------------------n~~~VlVa-sgg~Lv~f 330 (1225)
.++=... ..|++++...++.+..+... ....|...+. ++.+++.+ .++.|.++
T Consensus 195 ~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~ 274 (420)
T 3vl1_A 195 NVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVH 274 (420)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEE
T ss_pred EEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEE
Confidence 3443333 34888887765666665532 1123444443 23455555 57889888
Q ss_pred EeeccceeEEeeeccCceeEEEEeccCCCCCCCCccccCcEEEEEEecCCeEEEEeCCCcce-EEeecCCCCCCcccEEE
Q psy7977 331 EVHGSEIKQLAHRALEYEVACLDISPLSNEETSSEPAKAQLAAVGLWTDISARLLSLPSLEE-VCKEPLGGEIIPRSILM 409 (1225)
Q Consensus 331 eid~~~L~ev~~~~l~~eIScLai~~~~~~~~~~~~~~s~~laVG~w~d~tv~IlsL~~Le~-v~~~~L~~~~~P~SIll 409 (1225)
++...+............|.|++..+. ...+++.|.. |++|++|++.+.+. +............++
T Consensus 275 d~~~~~~~~~~~~~~~~~v~~~~~~~~----------~~~~l~~g~~-dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~-- 341 (420)
T 3vl1_A 275 NVFSKEQTIQLPSKFTCSCNSLTVDGN----------NANYIYAGYE-NGMLAQWDLRSPECPVGEFLINEGTPINNV-- 341 (420)
T ss_dssp ETTTCCEEEEECCTTSSCEEEEEECSS----------CTTEEEEEET-TSEEEEEETTCTTSCSEEEEESTTSCEEEE--
T ss_pred ECCCCceeEEcccccCCCceeEEEeCC----------CCCEEEEEeC-CCeEEEEEcCCCcCchhhhhccCCCCceEE--
Confidence 876543222222234567899998652 2338888887 99999999976432 221111001111222
Q ss_pred EeeCCeeEEEEEECCCcEEEEEEcC
Q psy7977 410 TCFEGHCYLLVALGDGSMFYFSLDP 434 (1225)
Q Consensus 410 ~~l~~~~~LlVGl~nG~L~~y~ld~ 434 (1225)
......+|+.+..||.+..|.+..
T Consensus 342 -~~~~~~~l~s~~~d~~v~iw~~~~ 365 (420)
T 3vl1_A 342 -YFAAGALFVSSGFDTSIKLDIISD 365 (420)
T ss_dssp -EEETTEEEEEETTTEEEEEEEECC
T ss_pred -EeCCCCEEEEecCCccEEEEeccC
Confidence 233446889999999999999864
No 82
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=94.87 E-value=5.9 Score=43.74 Aligned_cols=259 Identities=10% Similarity=0.068 Sum_probs=138.0
Q ss_pred CCeEEEEeecCCeEEEEEeeCCCCCCCceEEEeeeecc-ccceeeEEeeccccCCccEEEEEecCCCccEEEEeecceee
Q psy7977 130 NGVVFVGSRLGDSQLVKLNRSPDENGTYVSVMESFTNL-APIIDMVVVDLERQGQGQLVTCSGGFKEGSLRIIRNGIGIE 208 (1225)
Q Consensus 130 ~g~LFvGS~~GDS~L~~i~~~~ddd~~~l~v~d~l~Nl-gPI~D~~v~d~~~~~~~qLva~sG~g~~GsLrilR~GI~~~ 208 (1225)
..+|+.||..|.=.++.+.... .....++... ++|..+.+.. ...+++++ +.+|.+++..-.=+ +
T Consensus 48 ~~~l~tgs~D~~v~vW~~~~~~------~~~~~~l~gh~~~v~~~~~~~-----~~~~l~s~--s~D~~i~lWd~~~~-~ 113 (321)
T 3ow8_A 48 SETVVTGSLDDLVKVWKWRDER------LDLQWSLEGHQLGVVSVDISH-----TLPIAASS--SLDAHIRLWDLENG-K 113 (321)
T ss_dssp -CEEEEEETTSCEEEEEEETTE------EEEEEEECCCSSCEEEEEECS-----SSSEEEEE--ETTSEEEEEETTTT-E
T ss_pred CCEEEEEcCCCCEEEEECCCCC------eeeeeeeccCCCCEEEEEECC-----CCCEEEEE--eCCCcEEEEECCCC-C
Confidence 3467778877777777765421 3333344433 5666665532 22344333 35678888753211 1
Q ss_pred EEEEeeCCCcceEeEeeeCCCCCCccEEEEEcCCceE-EEEEcCc-eeeeec-------cCCcccccCeEEEEeeCCCeE
Q psy7977 209 EHACIDLPGIKGIWALSIGSPKNLDNTLVLSFVGHTR-VLTLSGA-EVEETE-------MGGFTSDQQTFYCGNVDPRTV 279 (1225)
Q Consensus 209 ~~~s~eLpgv~~iWtl~~~~~~~~d~yLVlSf~~~T~-Vl~i~ge-~veEv~-------~sgF~~~~~TL~ag~l~~~~i 279 (1225)
.+..++. +-..+|++.... ...+|+....+.+. ++.+... ...... .-.|..+...|++|..
T Consensus 114 ~~~~~~~-~~~~~~~~~~sp---dg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~----- 184 (321)
T 3ow8_A 114 QIKSIDA-GPVDAWTLAFSP---DSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAI----- 184 (321)
T ss_dssp EEEEEEC-CTTCCCCEEECT---TSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEET-----
T ss_pred EEEEEeC-CCccEEEEEECC---CCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEEcC-----
Confidence 2222321 122445554432 34566666555443 4443211 111111 1123334444444432
Q ss_pred EEEccCcEEEEecCCcceeeeecCCCCCcEEEEEec--CCEEEEE-ECCeEEEEEeeccceeEEeeeccCceeEEEEecc
Q psy7977 280 LQVTPSAAILISTESKARVSSWEPPNGKSISVVSCN--KNQVLCA-TGCDVYYLEVHGSEIKQLAHRALEYEVACLDISP 356 (1225)
Q Consensus 280 VQVT~~~IRli~~~~~~~i~eW~~p~g~~Iv~As~n--~~~VlVa-sgg~Lv~feid~~~L~ev~~~~l~~eIScLai~~ 356 (1225)
...|++++...++.+..+... ...|.+.+.. +++++.+ .++.|.++++...++... -..-...|.|+++.+
T Consensus 185 ----dg~i~iwd~~~~~~~~~~~~h-~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~-~~~h~~~v~~~~~sp 258 (321)
T 3ow8_A 185 ----DGIINIFDIATGKLLHTLEGH-AMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGT-LSGHASWVLNVAFCP 258 (321)
T ss_dssp ----TSCEEEEETTTTEEEEEECCC-SSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEE-ECCCSSCEEEEEECT
T ss_pred ----CCeEEEEECCCCcEEEEEccc-CCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEE-EcCCCCceEEEEECC
Confidence 245778887766666666532 2346666654 3445545 578898888765433221 112346788999875
Q ss_pred CCCCCCCCccccCcEEEEEEecCCeEEEEeCCCcceEEeecCCCCCCcccEEEEeeCCeeEEEEEECCCcEEEEEE
Q psy7977 357 LSNEETSSEPAKAQLAAVGLWTDISARLLSLPSLEEVCKEPLGGEIIPRSILMTCFEGHCYLLVALGDGSMFYFSL 432 (1225)
Q Consensus 357 ~~~~~~~~~~~~s~~laVG~w~d~tv~IlsL~~Le~v~~~~L~~~~~P~SIll~~l~~~~~LlVGl~nG~L~~y~l 432 (1225)
. ..+++.|.. |++|+||++.+.+.+....-. .....++.+. +...+|+.+-.||.+..|..
T Consensus 259 ~-----------~~~l~s~s~-D~~v~iwd~~~~~~~~~~~~h-~~~v~~v~~s--~~g~~l~s~~~d~~i~vwd~ 319 (321)
T 3ow8_A 259 D-----------DTHFVSSSS-DKSVKVWDVGTRTCVHTFFDH-QDQVWGVKYN--GNGSKIVSVGDDQEIHIYDC 319 (321)
T ss_dssp T-----------SSEEEEEET-TSCEEEEETTTTEEEEEECCC-SSCEEEEEEC--TTSSEEEEEETTCCEEEEEC
T ss_pred C-----------CCEEEEEeC-CCcEEEEeCCCCEEEEEEcCC-CCcEEEEEEC--CCCCEEEEEeCCCeEEEEeC
Confidence 2 457888887 999999999875544331110 1111233322 34568899999999988864
No 83
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=94.78 E-value=2.3 Score=53.38 Aligned_cols=153 Identities=8% Similarity=0.010 Sum_probs=88.3
Q ss_pred cccccCeEEEEeeCCCeEEEEccCcEEEEecC--CcceeeeecCCCCCcEEEEEec----CCEEEEE-ECCeEEEEEeec
Q psy7977 262 FTSDQQTFYCGNVDPRTVLQVTPSAAILISTE--SKARVSSWEPPNGKSISVVSCN----KNQVLCA-TGCDVYYLEVHG 334 (1225)
Q Consensus 262 F~~~~~TL~ag~l~~~~iVQVT~~~IRli~~~--~~~~i~eW~~p~g~~Iv~As~n----~~~VlVa-sgg~Lv~feid~ 334 (1225)
|..+...|++|.- + ..|++.+.. ..+.+..+.. ....|.+.+.+ +.+++.+ .++.|.++++..
T Consensus 17 ~s~dg~~latg~~-d--------g~I~vwd~~~~~~~~~~~l~~-h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~ 86 (753)
T 3jro_A 17 LDYYGKRLATCSS-D--------KTIKIFEVEGETHKLIDTLTG-HEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEEN 86 (753)
T ss_dssp CCSSSCCEEEEET-T--------TEEEEEEEETTEEEEEEEECC-CSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEET
T ss_pred ECCCCCeEEEEEC-C--------CcEEEEecCCCCCccceeccC-CcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCC
Confidence 4445555665543 2 234444433 1233333332 23468777775 4456555 688999999887
Q ss_pred cceeEEee-eccCceeEEEEeccCCCCCCCCccccCcEEEEEEecCCeEEEEeCCCcceEEeecCCC-CCCcccEEEEee
Q psy7977 335 SEIKQLAH-RALEYEVACLDISPLSNEETSSEPAKAQLAAVGLWTDISARLLSLPSLEEVCKEPLGG-EIIPRSILMTCF 412 (1225)
Q Consensus 335 ~~L~ev~~-~~l~~eIScLai~~~~~~~~~~~~~~s~~laVG~w~d~tv~IlsL~~Le~v~~~~L~~-~~~P~SIll~~l 412 (1225)
+....... ......|+|++..+. ....+++.|.. |++|++|++..........+.. .....++.+...
T Consensus 87 ~~~~~~~~~~~h~~~V~~v~~sp~---------~~~~~l~sgs~-dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~ 156 (753)
T 3jro_A 87 GRWSQIAVHAVHSASVNSVQWAPH---------EYGPLLLVASS-DGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPA 156 (753)
T ss_dssp TEEEEEEEECCCSSCEEEEEECCG---------GGCSEEEEEET-TSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCC
T ss_pred CcccccccccCCCCCeEEEEECCC---------CCCCEEEEEeC-CCcEEEEEeecCCCcceeEeecCCCceEEEEecCc
Confidence 65433332 234678999998752 11567888887 9999999997532211111110 111123332221
Q ss_pred -----------CCeeEEEEEECCCcEEEEEEcC
Q psy7977 413 -----------EGHCYLLVALGDGSMFYFSLDP 434 (1225)
Q Consensus 413 -----------~~~~~LlVGl~nG~L~~y~ld~ 434 (1225)
++..+|+.|..||.+..|.+..
T Consensus 157 ~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~ 189 (753)
T 3jro_A 157 TIEEDGEHNGTKESRKFVTGGADNLVKIWKYNS 189 (753)
T ss_dssp C---------CGGGCCEEEEETTSCEEEEEEET
T ss_pred ccccccccccCCCCCEEEEEECCCeEEEEeccC
Confidence 0256899999999999998864
No 84
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=94.76 E-value=11 Score=46.31 Aligned_cols=264 Identities=16% Similarity=0.149 Sum_probs=123.2
Q ss_pred EEEEEcCCCEEEEEEEeCcccCCceeeeecEEEEe-cccCcceeEEEecCC-eEEEEeecCCeEEEEEeeCCCCCCCceE
Q psy7977 82 YLLGDLAGRLFMLLLEKEEKMDGTFSVKEPKVELL-GEISIPECLTYLDNG-VVFVGSRLGDSQLVKLNRSPDENGTYVS 159 (1225)
Q Consensus 82 ~LL~~e~G~Ly~l~l~~d~~~~Gr~~Vs~i~i~~~-~tis~~SsL~~L~~g-~LFvGS~~GDS~L~~i~~~~ddd~~~l~ 159 (1225)
++-+..+|.+..-.+..+.. ..+.....+ +......+++.-.+| +|+.||..|.=.++.+.. -.
T Consensus 398 l~s~s~D~~i~~W~~~~~~~------~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~--------~~ 463 (694)
T 3dm0_A 398 IVSASRDKSIILWKLTKDDK------AYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAA--------GV 463 (694)
T ss_dssp EEEEETTSEEEEEECCCSTT------CSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT--------TE
T ss_pred EEEEeCCCcEEEEEccCCCc------ccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCC--------Cc
Confidence 44466667666555443211 111111122 333334566666555 555666544433443322 12
Q ss_pred EEeeee-ccccceeeEEeeccccCCccEEEEEecCCCccEEEEeecceeeEEEEee--CCC-cceEeEeeeCCCCCCccE
Q psy7977 160 VMESFT-NLAPIIDMVVVDLERQGQGQLVTCSGGFKEGSLRIIRNGIGIEEHACID--LPG-IKGIWALSIGSPKNLDNT 235 (1225)
Q Consensus 160 v~d~l~-NlgPI~D~~v~d~~~~~~~qLva~sG~g~~GsLrilR~GI~~~~~~s~e--Lpg-v~~iWtl~~~~~~~~d~y 235 (1225)
.+.++. .-++|.++++.. ....|++++ .+|++++....-.. ...+. ..+ ...++.+....+ ....+
T Consensus 464 ~~~~~~~h~~~v~~~~~s~----~~~~l~s~s---~D~~i~iwd~~~~~--~~~~~~~~~~h~~~v~~~~~~~~-~~~~~ 533 (694)
T 3dm0_A 464 STRRFVGHTKDVLSVAFSL----DNRQIVSAS---RDRTIKLWNTLGEC--KYTISEGGEGHRDWVSCVRFSPN-TLQPT 533 (694)
T ss_dssp EEEEEECCSSCEEEEEECT----TSSCEEEEE---TTSCEEEECTTSCE--EEEECSSTTSCSSCEEEEEECSC-SSSCE
T ss_pred ceeEEeCCCCCEEEEEEeC----CCCEEEEEe---CCCEEEEEECCCCc--ceeeccCCCCCCCcEEEEEEeCC-CCcce
Confidence 333443 347888877643 123454443 47888888632111 11111 112 234555655432 22245
Q ss_pred EEEEcCCce-EEEEEcCceee-eeccCCcccccCeEEEEee-CCC-eEEEEc-cCcEEEEecCCcceeeeecCCCCCcEE
Q psy7977 236 LVLSFVGHT-RVLTLSGAEVE-ETEMGGFTSDQQTFYCGNV-DPR-TVLQVT-PSAAILISTESKARVSSWEPPNGKSIS 310 (1225)
Q Consensus 236 LVlSf~~~T-~Vl~i~ge~ve-Ev~~sgF~~~~~TL~ag~l-~~~-~iVQVT-~~~IRli~~~~~~~i~eW~~p~g~~Iv 310 (1225)
|+....+.+ +++.+...... .... ....+.+-.+ .++ .++=.. ...|++.+...++.+..... ...|.
T Consensus 534 l~s~s~d~~v~vwd~~~~~~~~~~~~-----h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~--~~~v~ 606 (694)
T 3dm0_A 534 IVSASWDKTVKVWNLSNCKLRSTLAG-----HTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEA--NSVIH 606 (694)
T ss_dssp EEEEETTSCEEEEETTTCCEEEEECC-----CSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBC--SSCEE
T ss_pred EEEEeCCCeEEEEECCCCcEEEEEcC-----CCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecC--CCcEE
Confidence 555444443 45554322111 1110 0111222222 122 222222 24577777765555555443 23466
Q ss_pred EEEec-CCEEEEE-ECCeEEEEEeeccceeEEeeecc----------------C--ceeEEEEeccCCCCCCCCccccCc
Q psy7977 311 VVSCN-KNQVLCA-TGCDVYYLEVHGSEIKQLAHRAL----------------E--YEVACLDISPLSNEETSSEPAKAQ 370 (1225)
Q Consensus 311 ~As~n-~~~VlVa-sgg~Lv~feid~~~L~ev~~~~l----------------~--~eIScLai~~~~~~~~~~~~~~s~ 370 (1225)
+.+.. +.+++.+ +++.|.++++....+...-+... . ..+++++.++ ...
T Consensus 607 ~~~~sp~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sp-----------dg~ 675 (694)
T 3dm0_A 607 ALCFSPNRYWLCAATEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSA-----------DGS 675 (694)
T ss_dssp EEEECSSSSEEEEEETTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECT-----------TSS
T ss_pred EEEEcCCCcEEEEEcCCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcC-----------CCC
Confidence 66665 3344444 77788888876543322111100 0 1245566544 256
Q ss_pred EEEEEEecCCeEEEEeCC
Q psy7977 371 LAAVGLWTDISARLLSLP 388 (1225)
Q Consensus 371 ~laVG~w~d~tv~IlsL~ 388 (1225)
+++.|.. ||+|+||++.
T Consensus 676 ~l~sgs~-Dg~i~iW~i~ 692 (694)
T 3dm0_A 676 TLFSGYT-DGVIRVWGIG 692 (694)
T ss_dssp EEEEEET-TSEEEEEEC-
T ss_pred EEEEEcC-CCeEEEEecc
Confidence 8888887 9999999985
No 85
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=94.66 E-value=8.1 Score=44.30 Aligned_cols=299 Identities=12% Similarity=0.129 Sum_probs=159.2
Q ss_pred CCeEEEEEcCCCEEEEEEEeCcccCCceeeeecEEEEecccCcceeEEEecCCeEEEEeecCCeEEEEEeeCCCCCCCce
Q psy7977 79 SERYLLGDLAGRLFMLLLEKEEKMDGTFSVKEPKVELLGEISIPECLTYLDNGVVFVGSRLGDSQLVKLNRSPDENGTYV 158 (1225)
Q Consensus 79 ~~~~LL~~e~G~Ly~l~l~~d~~~~Gr~~Vs~i~i~~~~tis~~SsL~~L~~g~LFvGS~~GDS~L~~i~~~~ddd~~~l 158 (1225)
++.++.+..+|.+....+. +|+ .+..+. +......++.. .+++++.|+..|.=.++.+.. .
T Consensus 129 g~~l~sg~~dg~i~vwd~~-----~~~-~~~~~~----~h~~~v~~~~~-~~~~l~s~~~dg~i~vwd~~~--------~ 189 (445)
T 2ovr_B 129 GNRIVSGSDDNTLKVWSAV-----TGK-CLRTLV----GHTGGVWSSQM-RDNIIISGSTDRTLKVWNAET--------G 189 (445)
T ss_dssp TTEEEEEETTSCEEEEETT-----TCC-EEEECC----CCSSCEEEEEE-ETTEEEEEETTSCEEEEETTT--------T
T ss_pred CCEEEEEECCCcEEEEECC-----CCc-EEEEEc----CCCCCEEEEEe-cCCEEEEEeCCCeEEEEECCc--------C
Confidence 5567778888888766543 132 121111 22223345544 467888888766555554432 1
Q ss_pred EEEeeee-ccccceeeEEeeccccCCccEEEEEecCCCccEEEEeecceeeEEEEeeCCCcceEeEeeeCCCCCCccEEE
Q psy7977 159 SVMESFT-NLAPIIDMVVVDLERQGQGQLVTCSGGFKEGSLRIIRNGIGIEEHACIDLPGIKGIWALSIGSPKNLDNTLV 237 (1225)
Q Consensus 159 ~v~d~l~-NlgPI~D~~v~d~~~~~~~qLva~sG~g~~GsLrilR~GI~~~~~~s~eLpgv~~iWtl~~~~~~~~d~yLV 237 (1225)
+.+.++. .-++|..+... ...+++++ .+|.+++..-.-+ +.+..+. .....+..+... ..+++
T Consensus 190 ~~~~~~~~h~~~v~~~~~~------~~~l~s~s---~dg~i~~wd~~~~-~~~~~~~-~~~~~v~~~~~~-----~~~l~ 253 (445)
T 2ovr_B 190 ECIHTLYGHTSTVRCMHLH------EKRVVSGS---RDATLRVWDIETG-QCLHVLM-GHVAAVRCVQYD-----GRRVV 253 (445)
T ss_dssp EEEEEECCCSSCEEEEEEE------TTEEEEEE---TTSEEEEEESSSC-CEEEEEE-CCSSCEEEEEEC-----SSCEE
T ss_pred cEEEEECCCCCcEEEEEec------CCEEEEEe---CCCEEEEEECCCC-cEEEEEc-CCcccEEEEEEC-----CCEEE
Confidence 3444444 34567776652 12344433 4678888753211 1122221 111233444431 24555
Q ss_pred EEcCCce-EEEEEcC-ceeeeeccCCcccccCeEEEEeeCCCeEEEEc-cCcEEEEecCCcceeeeecCCCCCcEEEEEe
Q psy7977 238 LSFVGHT-RVLTLSG-AEVEETEMGGFTSDQQTFYCGNVDPRTVLQVT-PSAAILISTESKARVSSWEPPNGKSISVVSC 314 (1225)
Q Consensus 238 lSf~~~T-~Vl~i~g-e~veEv~~sgF~~~~~TL~ag~l~~~~iVQVT-~~~IRli~~~~~~~i~eW~~p~g~~Iv~As~ 314 (1225)
....+.+ .++.+.. +.+.... .....+.+-.+.+..++=.. ...|++++...++.+..+... ...+.+.+.
T Consensus 254 ~~~~dg~i~iwd~~~~~~~~~~~-----~~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~-~~~v~~~~~ 327 (445)
T 2ovr_B 254 SGAYDFMVKVWDPETETCLHTLQ-----GHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGH-QSLTSGMEL 327 (445)
T ss_dssp EEETTSCEEEEEGGGTEEEEEEC-----CCSSCEEEEEECSSEEEEEETTSCEEEEETTTCCEEEEECCC-CSCEEEEEE
T ss_pred EEcCCCEEEEEECCCCcEeEEec-----CCCCceEEEEECCCEEEEEeCCCeEEEEECCCCCEEEEEcCC-cccEEEEEE
Confidence 5544444 3444321 1222221 11112222223223333332 356888887766666666543 335777777
Q ss_pred cCCEEEEE-ECCeEEEEEeeccce-eEEee-eccCceeEEEEeccCCCCCCCCccccCcEEEEEEecCCeEEEEeCCCcc
Q psy7977 315 NKNQVLCA-TGCDVYYLEVHGSEI-KQLAH-RALEYEVACLDISPLSNEETSSEPAKAQLAAVGLWTDISARLLSLPSLE 391 (1225)
Q Consensus 315 n~~~VlVa-sgg~Lv~feid~~~L-~ev~~-~~l~~eIScLai~~~~~~~~~~~~~~s~~laVG~w~d~tv~IlsL~~Le 391 (1225)
.+.+++.+ .++.|.++++..++. ..... ......|.|++.. .++++.|.. |++|++|++.+.+
T Consensus 328 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~-------------~~~l~s~~~-dg~v~iwd~~~~~ 393 (445)
T 2ovr_B 328 KDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN-------------KNFVITSSD-DGTVKLWDLKTGE 393 (445)
T ss_dssp ETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC-------------SSEEEEEET-TSEEEEEETTTCC
T ss_pred eCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC-------------CCEEEEEeC-CCeEEEEECCCCc
Confidence 88877777 688999998865532 22221 1245678888873 357888887 9999999998765
Q ss_pred eEEee-cCCC---CCCcccEEEEeeCCeeEEEEEECCCc----EEEEEEcC
Q psy7977 392 EVCKE-PLGG---EIIPRSILMTCFEGHCYLLVALGDGS----MFYFSLDP 434 (1225)
Q Consensus 392 ~v~~~-~L~~---~~~P~SIll~~l~~~~~LlVGl~nG~----L~~y~ld~ 434 (1225)
.+... .... .....++.+. +...+|.+|..||. +..+.++.
T Consensus 394 ~~~~~~~~~~~~~~~~v~~~~~s--~~~~~la~~~~dg~~~~~l~v~df~~ 442 (445)
T 2ovr_B 394 FIRNLVTLESGGSGGVVWRIRAS--NTKLVCAVGSRNGTEETKLLVLDFDV 442 (445)
T ss_dssp EEEEEEECTTGGGTCEEEEEEEC--SSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred eeeeeeccccCCCCceEEEEEec--CCEEEEEEcccCCCCccEEEEEECCC
Confidence 54432 1110 1112233322 35788999999997 87787764
No 86
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=94.66 E-value=0.81 Score=50.96 Aligned_cols=175 Identities=14% Similarity=0.148 Sum_probs=103.1
Q ss_pred EEEEEECCCCcEEEEEECCCCCceEEEEEEEecC-CCCeEEEEEeeeeCCCCCCCcceEEEEEEEeCCcEEEEEEEEecC
Q psy7977 1006 NLLIIDQNTFEILHAHQLFPGEYALSLISSKFGE-DPNTYFVLGTAVVHPEENEPKQGRIIIFHYDDGKLQQIAEKEIKG 1084 (1225)
Q Consensus 1006 ~irlvdp~t~~~i~~~eL~~nE~~~si~~v~~~~-~~~~~lvVGTa~~~~eed~~~~GrI~vf~i~~~kL~lv~~~ev~G 1084 (1225)
.+.+.|..+.+++..++....+.+.+++ |.. ....+++.|. ..|.|++|++..++...+.....++
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~---~~~~~~~~~l~s~s----------~dg~i~~wd~~~~~~~~~~~~~~~~ 171 (343)
T 3lrv_A 105 QITILDSKTNKVLREIEVDSANEIIYMY---GHNEVNTEYFIWAD----------NRGTIGFQSYEDDSQYIVHSAKSDV 171 (343)
T ss_dssp EEEEEETTTCCEEEEEECCCSSCEEEEE---CCC---CCEEEEEE----------TTCCEEEEESSSSCEEEEECCCSSC
T ss_pred ceEEeecCCcceeEEeecCCCCCEEEEE---cCCCCCCCEEEEEe----------CCCcEEEEECCCCcEEEEEecCCCC
Confidence 5667788888888888888777777764 332 1346777775 2478999999877664444445556
Q ss_pred ceeeeccc-cCeEEEE--eCCEEEEEEcCCCcee-e-eeecccceeEEEEEEE--ECCEEEEeeccccEEEEEEecCCCe
Q psy7977 1085 ACYSMCEF-NGKLLAS--INSTVRLFEWTNEKEL-R-LECSHFNNIIALFLKV--KGDFILVGDLMRSLTLLQYKTMEGS 1157 (1225)
Q Consensus 1085 ~v~al~~f-~G~LLa~--vg~~l~vy~l~~~~~L-~-~e~~~~~~~i~~~l~~--~g~~IlvGD~~kSv~~l~y~~~~~~ 1157 (1225)
.+++++-- +|++||+ ...+|++|++...+.+ . .+..+-.. +..+.. .|.+++.|. -..+.+ |+....+
T Consensus 172 ~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~--v~~l~fs~~g~~l~s~~-~~~v~i--wd~~~~~ 246 (343)
T 3lrv_A 172 EYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAK--IKEVKFADNGYWMVVEC-DQTVVC--FDLRKDV 246 (343)
T ss_dssp CCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSC--EEEEEECTTSSEEEEEE-SSBEEE--EETTSST
T ss_pred ceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCC--EEEEEEeCCCCEEEEEe-CCeEEE--EEcCCCC
Confidence 77776632 6777765 5689999999877655 2 22212222 244543 467888887 334444 5543322
Q ss_pred ----EEEEeccCCCceeEEEEeeeCCcEEEE--cCCCcEEEEEeCCC
Q psy7977 1158 ----FEEISRDYNPNWMTSIEILDDELFLGA--ENSYNLFICQKDSA 1198 (1225)
Q Consensus 1158 ----L~~~arD~~~~wvta~~~Ld~dt~l~a--D~~gNl~vl~~~~~ 1198 (1225)
+..+..+..+..-+++.+=.++.++++ ..++.+.++++...
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~ 293 (343)
T 3lrv_A 247 GTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKK 293 (343)
T ss_dssp TCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred cceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEccc
Confidence 111111111211145666555554444 44888999988654
No 87
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=94.65 E-value=2.3 Score=45.95 Aligned_cols=237 Identities=11% Similarity=0.065 Sum_probs=117.4
Q ss_pred CcEEEEecCCcceeeeecCCCCC-cEEEEEe--cCCEEEEE--ECCeEEEEEeeccceeEEeeeccCc------eeEEEE
Q psy7977 285 SAAILISTESKARVSSWEPPNGK-SISVVSC--NKNQVLCA--TGCDVYYLEVHGSEIKQLAHRALEY------EVACLD 353 (1225)
Q Consensus 285 ~~IRli~~~~~~~i~eW~~p~g~-~Iv~As~--n~~~VlVa--sgg~Lv~feid~~~L~ev~~~~l~~------eIScLa 353 (1225)
..|++++..+++.+..+..+... .+...+. .+.+++++ .++.|..+++..++... ...+.. .+.+++
T Consensus 11 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~--~~~~~~~~~~~~~~~~~~ 88 (337)
T 1pby_B 11 DKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLG--RIDLSTPEERVKSLFGAA 88 (337)
T ss_dssp TEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEE--EEECCBTTEEEECTTCEE
T ss_pred CeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEe--eEEcCCcccccccccceE
Confidence 45666776655555555543310 1222333 45577776 35788888766543322 222222 455666
Q ss_pred eccCCCCCCCCccccCcEEEEEEe-----------cCCeEEEEeCCCcceEEeecCCCCCCcccEEEEeeCCeeEEEEEE
Q psy7977 354 ISPLSNEETSSEPAKAQLAAVGLW-----------TDISARLLSLPSLEEVCKEPLGGEIIPRSILMTCFEGHCYLLVAL 422 (1225)
Q Consensus 354 i~~~~~~~~~~~~~~s~~laVG~w-----------~d~tv~IlsL~~Le~v~~~~L~~~~~P~SIll~~l~~~~~LlVGl 422 (1225)
+.+ ..++++++.. .++.|.++++.+.+.+.....+ ..|.++.+.. +..+|+++
T Consensus 89 ~s~-----------dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~--~~~~~~~~s~--dg~~l~~~- 152 (337)
T 1pby_B 89 LSP-----------DGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAP--RQITMLAWAR--DGSKLYGL- 152 (337)
T ss_dssp ECT-----------TSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECC--SSCCCEEECT--TSSCEEEE-
T ss_pred ECC-----------CCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCC--CCcceeEECC--CCCEEEEe-
Confidence 654 1346777741 3699999999876655443332 3466665432 34456666
Q ss_pred CCCcEEEEEEcCCCCccccceeeeecC--ccceEEEEeeCCceEEEEecCCc-E------------------------EE
Q psy7977 423 GDGSMFYFSLDPASGRLTDKKKVTLGT--QPTVLKTFRSLSTTNVFACSDRP-T------------------------VI 475 (1225)
Q Consensus 423 ~nG~L~~y~ld~~sg~Ls~~k~~~LG~--~pV~L~~~~~~g~~~Vfa~sdrP-~------------------------li 475 (1225)
+|.+..+.+. ++++. +....+. .|+.+.| +| ..+++.+... . .+
T Consensus 153 -~~~i~~~d~~--~~~~~--~~~~~~~~~~~~~~s~---dg-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 223 (337)
T 1pby_B 153 -GRDLHVMDPE--AGTLV--EDKPIQSWEAETYAQP---DV-LAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLT 223 (337)
T ss_dssp -SSSEEEEETT--TTEEE--EEECSTTTTTTTBCCC---BC-CCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEE
T ss_pred -CCeEEEEECC--CCcEe--eeeeccccCCCceeCC---Cc-cEEeeeccCCCceeeeeeccccccccccccccccceEE
Confidence 7887776543 34322 1111222 3433221 11 1122222110 0 11
Q ss_pred EE-cCCeeEEeeccccc-ccccccCCCCCCCCeEEEEeCCeEEEEEEcCCCCeeeEEEeCCCcccEEEEecCCCEEEEEE
Q psy7977 476 YS-SNHKLVFSNVNLRQ-VNHMCSLNAESYPDSLALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVIT 553 (1225)
Q Consensus 476 ys-s~g~l~~~pl~~~~-v~~~s~F~se~~p~glv~vs~~~LrI~~i~~~~~l~ir~IpLg~TprrIay~p~s~~~vV~t 553 (1225)
+. ..+++...++.... .-....|+. ....+++.++.+.+..+.. .-..+.++.+..|..++++|..+.++++.
T Consensus 224 ~d~~~~~~~~~~~~~~~~~~~~~~~s~---dg~~l~~~~~~v~~~d~~~--~~~~~~~~~~~~~~~~~~s~dg~~l~~~~ 298 (337)
T 1pby_B 224 MDLETGEMAMREVRIMDVFYFSTAVNP---AKTRAFGAYNVLESFDLEK--NASIKRVPLPHSYYSVNVSTDGSTVWLGG 298 (337)
T ss_dssp EETTTCCEEEEEEEECSSCEEEEEECT---TSSEEEEEESEEEEEETTT--TEEEEEEECSSCCCEEEECTTSCEEEEES
T ss_pred EeCCCCCceEeecCCCCCceeeEEECC---CCCEEEEeCCeEEEEECCC--CcCcceecCCCceeeEEECCCCCEEEEEc
Confidence 11 22222211111000 000011221 1224555566777666543 33457788999999999999999777653
No 88
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=94.54 E-value=7.8 Score=43.58 Aligned_cols=238 Identities=10% Similarity=0.034 Sum_probs=122.2
Q ss_pred CcEEEEecCCcceeeeecCCCCCcEEEEEec--CCEEEEE-ECCeEEEEEeeccce-eEEeeeccCceeEEEEeccCCCC
Q psy7977 285 SAAILISTESKARVSSWEPPNGKSISVVSCN--KNQVLCA-TGCDVYYLEVHGSEI-KQLAHRALEYEVACLDISPLSNE 360 (1225)
Q Consensus 285 ~~IRli~~~~~~~i~eW~~p~g~~Iv~As~n--~~~VlVa-sgg~Lv~feid~~~L-~ev~~~~l~~eIScLai~~~~~~ 360 (1225)
..|++++...++....+. .....|.+.+.+ +.+++.+ .++.|.++++..++. ... ..-...|.|+++.+-
T Consensus 119 g~i~iwd~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~--~~h~~~v~~~~~~~~--- 192 (420)
T 3vl1_A 119 GDIKVLDSNFNLQREIDQ-AHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTL--IGHRATVTDIAIIDR--- 192 (420)
T ss_dssp SCEEEECTTSCEEEEETT-SSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEE--ECCSSCEEEEEEETT---
T ss_pred CCEEEEeCCCcceeeecc-cccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEE--cCCCCcEEEEEEcCC---
Confidence 346666655444433332 233467777775 3455555 578999998876532 222 224567899998752
Q ss_pred CCCCccccCcEEEEEEecCCeEEEEeCCCcceEEeecCCC--CCCcccEEEEe------------------e-CCeeEEE
Q psy7977 361 ETSSEPAKAQLAAVGLWTDISARLLSLPSLEEVCKEPLGG--EIIPRSILMTC------------------F-EGHCYLL 419 (1225)
Q Consensus 361 ~~~~~~~~s~~laVG~w~d~tv~IlsL~~Le~v~~~~L~~--~~~P~SIll~~------------------l-~~~~~Ll 419 (1225)
..+++.|.. |++|++|++.+.+.+....... .....++.+.. + ....+|+
T Consensus 193 --------~~~l~s~~~-d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 263 (420)
T 3vl1_A 193 --------GRNVLSASL-DGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVI 263 (420)
T ss_dssp --------TTEEEEEET-TSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEE
T ss_pred --------CCEEEEEcC-CCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEE
Confidence 457888887 9999999998655544322110 01111222211 1 1356899
Q ss_pred EEECCCcEEEEEEcCCCCccccceeeeec--CccceEEEEeeCCceEEEEecCCc-EEEEEc-CC-e-eEEeec-ccccc
Q psy7977 420 VALGDGSMFYFSLDPASGRLTDKKKVTLG--TQPTVLKTFRSLSTTNVFACSDRP-TVIYSS-NH-K-LVFSNV-NLRQV 492 (1225)
Q Consensus 420 VGl~nG~L~~y~ld~~sg~Ls~~k~~~LG--~~pV~L~~~~~~g~~~Vfa~sdrP-~liyss-~g-~-l~~~pl-~~~~v 492 (1225)
+|..||.+..|.+.. ++. ...... ..++.-..+...+...+++.+..- ..+|.- .+ . +..... ....+
T Consensus 264 ~~~~dg~i~i~d~~~--~~~---~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v 338 (420)
T 3vl1_A 264 AGHVSGVITVHNVFS--KEQ---TIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPI 338 (420)
T ss_dssp EEETTSCEEEEETTT--CCE---EEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCE
T ss_pred EEcCCCeEEEEECCC--Cce---eEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCc
Confidence 999999999988653 211 111111 123332223222222333333222 233332 11 1 111111 11222
Q ss_pred cccccCCCCCCCCeEEEEe--CCeEEEEEEcCCCC--------eeeEEEeCCCcccEEEEecCCC
Q psy7977 493 NHMCSLNAESYPDSLALAT--DSTFTFGTIDEIQK--------LHIRTVPLGEAPRRIAYQESSQ 547 (1225)
Q Consensus 493 ~~~s~F~se~~p~glv~vs--~~~LrI~~i~~~~~--------l~ir~IpLg~TprrIay~p~s~ 547 (1225)
..+ .+. +..++++. ++.+++-.+..... -+.....-......++|+|..+
T Consensus 339 ~~~-~~~----~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 398 (420)
T 3vl1_A 339 NNV-YFA----AGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDE 398 (420)
T ss_dssp EEE-EEE----TTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSS
T ss_pred eEE-EeC----CCCEEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCC
Confidence 222 111 23344433 46899998876421 1223334456889999999888
No 89
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=94.53 E-value=3.8 Score=47.17 Aligned_cols=251 Identities=10% Similarity=0.042 Sum_probs=130.4
Q ss_pred ceEEEeeeeccccceeeEEeeccccCCccEEEEEecCCCccEEEEeecce---------eeEEEEeeCCCcceEeEeeeC
Q psy7977 157 YVSVMESFTNLAPIIDMVVVDLERQGQGQLVTCSGGFKEGSLRIIRNGIG---------IEEHACIDLPGIKGIWALSIG 227 (1225)
Q Consensus 157 ~l~v~d~l~NlgPI~D~~v~d~~~~~~~qLva~sG~g~~GsLrilR~GI~---------~~~~~s~eLpgv~~iWtl~~~ 227 (1225)
.+.....+..-++|..+.+... ...++++++ .+|.+++..-.-. ...+..+.- .-..++.+...
T Consensus 118 ~~~~~~~~~h~~~v~~l~~~p~----~~~~lat~~--~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~~ 190 (430)
T 2xyi_A 118 KIEIEIKINHEGEVNRARYMPQ----NACVIATKT--PSSDVLVFDYTKHPSKPEPSGECQPDLRLRG-HQKEGYGLSWN 190 (430)
T ss_dssp CEEEEEEEEESSCCSEEEEETT----EEEEEEEEC--SSSCEEEEEGGGSCSSCCTTCCCCCSEEEEC-CSSCCCCEEEC
T ss_pred ceEEEEEEcCCCcEEEEEECCC----CCcEEEEEC--CCCcEEEEECCCcccccCccccCCCcEEecC-CCCCeEEEEeC
Confidence 4667778888899999888641 134555443 4678888875431 111222211 11223334333
Q ss_pred CCCCCccEEEEEcCCceE-EEEEcCcee--eeec-cCCcccccCeEEEEeeC---CCeEEEEc-cCcEEEEecCCc---c
Q psy7977 228 SPKNLDNTLVLSFVGHTR-VLTLSGAEV--EETE-MGGFTSDQQTFYCGNVD---PRTVLQVT-PSAAILISTESK---A 296 (1225)
Q Consensus 228 ~~~~~d~yLVlSf~~~T~-Vl~i~ge~v--eEv~-~sgF~~~~~TL~ag~l~---~~~iVQVT-~~~IRli~~~~~---~ 296 (1225)
.. ...+|+.+..+.+. ++.+..... ..+. ...+......+.+-.+. +..++=.. ...|++++.... +
T Consensus 191 ~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~ 268 (430)
T 2xyi_A 191 PN--LNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSK 268 (430)
T ss_dssp TT--STTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSS
T ss_pred CC--CCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCc
Confidence 21 12267766665554 555432100 0000 00111111122222221 12333332 345777776543 2
Q ss_pred eeeeecCCCCCcEEEEEec--CCEEEE-E-ECCeEEEEEeecc-c-eeEEeeeccCceeEEEEeccCCCCCCCCccccCc
Q psy7977 297 RVSSWEPPNGKSISVVSCN--KNQVLC-A-TGCDVYYLEVHGS-E-IKQLAHRALEYEVACLDISPLSNEETSSEPAKAQ 370 (1225)
Q Consensus 297 ~i~eW~~p~g~~Iv~As~n--~~~VlV-a-sgg~Lv~feid~~-~-L~ev~~~~l~~eIScLai~~~~~~~~~~~~~~s~ 370 (1225)
.+..... .+..|.+.+.+ ++++++ + .++.|.++.+... . +.... .....|+|++..+. ...
T Consensus 269 ~~~~~~~-~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~--~h~~~v~~i~~sp~----------~~~ 335 (430)
T 2xyi_A 269 PSHTVDA-HTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFE--SHKDEIFQVQWSPH----------NET 335 (430)
T ss_dssp CSEEEEC-CSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEE--CCSSCEEEEEECSS----------CTT
T ss_pred ceeEeec-CCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEee--cCCCCEEEEEECCC----------CCC
Confidence 3333332 33457777776 444554 4 5789999988753 2 22222 23567899998763 235
Q ss_pred EEEEEEecCCeEEEEeCCCc--------------ceEEeecCCCCCCcccEEEEeeCCee-EEEEEECCCcEEEEEEc
Q psy7977 371 LAAVGLWTDISARLLSLPSL--------------EEVCKEPLGGEIIPRSILMTCFEGHC-YLLVALGDGSMFYFSLD 433 (1225)
Q Consensus 371 ~laVG~w~d~tv~IlsL~~L--------------e~v~~~~L~~~~~P~SIll~~l~~~~-~LlVGl~nG~L~~y~ld 433 (1225)
+++.|.. |++|+||++... +.+....- ....+.++.+.. ..+ +|..+-.||.+..|+++
T Consensus 336 ~l~s~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~p--~~~~~l~s~s~dg~i~iw~~~ 409 (430)
T 2xyi_A 336 ILASSGT-DRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGG-HTAKISDFSWNP--NEPWIICSVSEDNIMQVWQMA 409 (430)
T ss_dssp EEEEEET-TSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCC-CSSCEEEEEECS--SSTTEEEEEETTSEEEEEEEC
T ss_pred EEEEEeC-CCcEEEEeCCCCccccCccccccCCcceEEEcCC-CCCCceEEEECC--CCCCEEEEEECCCCEEEeEcc
Confidence 6777876 999999999652 22221111 012234444332 334 67788899999999876
No 90
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=94.52 E-value=7.7 Score=46.80 Aligned_cols=252 Identities=13% Similarity=0.129 Sum_probs=132.0
Q ss_pred CcEEEEecCCcceeeeecCCCCCcEEEEEe--cCCEEEEE-ECCeEEEEEeeccceeEEeeeccCceeEEEEeccCCCCC
Q psy7977 285 SAAILISTESKARVSSWEPPNGKSISVVSC--NKNQVLCA-TGCDVYYLEVHGSEIKQLAHRALEYEVACLDISPLSNEE 361 (1225)
Q Consensus 285 ~~IRli~~~~~~~i~eW~~p~g~~Iv~As~--n~~~VlVa-sgg~Lv~feid~~~L~ev~~~~l~~eIScLai~~~~~~~ 361 (1225)
+.|++++..+++.+..+.... .+-.+++ .+++++++ .++.|..++++...+..+........+.++++++...
T Consensus 159 ~~V~v~D~~t~~~~~~i~~g~--~~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~g~~p~~va~sp~~~-- 234 (543)
T 1nir_A 159 GQIALVDGDSKKIVKVIDTGY--AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKG-- 234 (543)
T ss_dssp TEEEEEETTTCCEEEEEECST--TEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTT--
T ss_pred CeEEEEECCCceEEEEEecCc--ccceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEecCCCcceEEeCCCcC--
Confidence 457778877766777765322 2333333 45677777 5788999888422344444445566778888865210
Q ss_pred CCCccccCcEEEEEEecCCeEEEEeCCCcceEEeecCCC---C---CCc----ccEEEEeeCCeeEEEEEECCCcEEEEE
Q psy7977 362 TSSEPAKAQLAAVGLWTDISARLLSLPSLEEVCKEPLGG---E---IIP----RSILMTCFEGHCYLLVALGDGSMFYFS 431 (1225)
Q Consensus 362 ~~~~~~~s~~laVG~w~d~tv~IlsL~~Le~v~~~~L~~---~---~~P----~SIll~~l~~~~~LlVGl~nG~L~~y~ 431 (1225)
...++++++.+.+++|.||+..+++.+......+ + ..| .++.+.. .+..+++....+|.+..+.
T Consensus 235 -----~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~-~~~~~~vs~~~~g~i~vvd 308 (543)
T 1nir_A 235 -----YEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASH-EHPEFIVNVKETGKVLLVN 308 (543)
T ss_dssp -----CTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECS-SSSEEEEEETTTTEEEEEE
T ss_pred -----CCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECC-CCCEEEEEECCCCeEEEEE
Confidence 0246788887559999999998887765433311 0 012 2232221 1233444555678887776
Q ss_pred EcCCCCccccceeeeecCccceEEEEeeCCceEEEEec--CCc-EEEEEcCCeeEE-eeccccc-ccccccCCCCCCCC-
Q psy7977 432 LDPASGRLTDKKKVTLGTQPTVLKTFRSLSTTNVFACS--DRP-TVIYSSNHKLVF-SNVNLRQ-VNHMCSLNAESYPD- 505 (1225)
Q Consensus 432 ld~~sg~Ls~~k~~~LG~~pV~L~~~~~~g~~~Vfa~s--drP-~liyss~g~l~~-~pl~~~~-v~~~s~F~se~~p~- 505 (1225)
+.... .+. ....-.|..|-.+ .+...| ..+++.+ +.- .++-...+++.- .++...+ ......|. .|+
T Consensus 309 ~~~~~-~l~-~~~i~~~~~~~~~-~~spdg-~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~~---~p~~ 381 (543)
T 1nir_A 309 YKDID-NLT-VTSIGAAPFLHDG-GWDSSH-RYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFV---HPKY 381 (543)
T ss_dssp CTTSS-SCE-EEEEECCSSCCCE-EECTTS-CEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEEE---ETTT
T ss_pred ecCCC-cce-eEEeccCcCccCc-eECCCC-CEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCcccC---CCCC
Confidence 64321 111 1111122222221 222223 3334433 222 232223444321 2221110 00111221 133
Q ss_pred eEEEEe----CCeEEEEEEcCCC-----CeeeEEEeCC-CcccEEEEecCCCEEEEEE
Q psy7977 506 SLALAT----DSTFTFGTIDEIQ-----KLHIRTVPLG-EAPRRIAYQESSQTFGVIT 553 (1225)
Q Consensus 506 glv~vs----~~~LrI~~i~~~~-----~l~ir~IpLg-~TprrIay~p~s~~~vV~t 553 (1225)
+-++++ ++.+++..++... --.+++++.. ..+..|++||.++.+++..
T Consensus 382 g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~ 439 (543)
T 1nir_A 382 GPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDT 439 (543)
T ss_dssp EEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECC
T ss_pred ccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEec
Confidence 555554 3678888877632 2356889875 4678999999999988875
No 91
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=94.49 E-value=7.8 Score=43.42 Aligned_cols=125 Identities=13% Similarity=0.127 Sum_probs=74.6
Q ss_pred CcEEEEecCCcceeeeecCCCCCcEEEEEecCCEEEEE-ECCeEEEEEeeccceeEEeeeccCc-eeEEEEeccCCCCCC
Q psy7977 285 SAAILISTESKARVSSWEPPNGKSISVVSCNKNQVLCA-TGCDVYYLEVHGSEIKQLAHRALEY-EVACLDISPLSNEET 362 (1225)
Q Consensus 285 ~~IRli~~~~~~~i~eW~~p~g~~Iv~As~n~~~VlVa-sgg~Lv~feid~~~L~ev~~~~l~~-eIScLai~~~~~~~~ 362 (1225)
..+..++..+++.+ |..+.+ ........+..+.++ .++.|..|+...+++.- ....+.. ..+...+
T Consensus 249 g~l~~~d~~tG~~~--w~~~~~-~~~~~~~~~~~l~~~~~~g~l~~~d~~tG~~~w-~~~~~~~~~~~~~~~-------- 316 (376)
T 3q7m_A 249 GNLTALDLRSGQIM--WKRELG-SVNDFIVDGNRIYLVDQNDRVMALTIDGGVTLW-TQSDLLHRLLTSPVL-------- 316 (376)
T ss_dssp SCEEEEETTTCCEE--EEECCC-CEEEEEEETTEEEEEETTCCEEEEETTTCCEEE-EECTTTTSCCCCCEE--------
T ss_pred cEEEEEECCCCcEE--eeccCC-CCCCceEECCEEEEEcCCCeEEEEECCCCcEEE-eecccCCCcccCCEE--------
Confidence 45777777655444 554433 244555668888887 56788888776554321 1111221 1111111
Q ss_pred CCccccCcEEEEEEecCCeEEEEeCCCcceEEeecCCCCCCcccEEEEeeCCeeEEEEEECCCcEEEEE
Q psy7977 363 SSEPAKAQLAAVGLWTDISARLLSLPSLEEVCKEPLGGEIIPRSILMTCFEGHCYLLVALGDGSMFYFS 431 (1225)
Q Consensus 363 ~~~~~~s~~laVG~w~d~tv~IlsL~~Le~v~~~~L~~~~~P~SIll~~l~~~~~LlVGl~nG~L~~y~ 431 (1225)
....+.++.. ++.++.++..+-+.+....++...+..+..+. ...|+++..+|.|+.|+
T Consensus 317 -----~~~~l~v~~~-~g~l~~~d~~tG~~~~~~~~~~~~~~~~~~~~----~~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 317 -----YNGNLVVGDS-EGYLHWINVEDGRFVAQQKVDSSGFQTEPVAA----DGKLLIQAKDGTVYSIT 375 (376)
T ss_dssp -----ETTEEEEECT-TSEEEEEETTTCCEEEEEECCTTCBCSCCEEE----TTEEEEEBTTSCEEEEE
T ss_pred -----ECCEEEEEeC-CCeEEEEECCCCcEEEEEecCCCcceeCCEEE----CCEEEEEeCCCEEEEEe
Confidence 2356888876 89999999988777766655322222223332 24689999999998874
No 92
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=94.47 E-value=7.2 Score=44.62 Aligned_cols=109 Identities=11% Similarity=0.152 Sum_probs=69.6
Q ss_pred cEEEEEecC--CEEEEE-ECCeEEEEEeeccceeEEeeeccCceeEEEEeccCCCCCCCCccccCcEEEEEEecCCeEEE
Q psy7977 308 SISVVSCNK--NQVLCA-TGCDVYYLEVHGSEIKQLAHRALEYEVACLDISPLSNEETSSEPAKAQLAAVGLWTDISARL 384 (1225)
Q Consensus 308 ~Iv~As~n~--~~VlVa-sgg~Lv~feid~~~L~ev~~~~l~~eIScLai~~~~~~~~~~~~~~s~~laVG~w~d~tv~I 384 (1225)
.|.+.+.+. ++++.+ .++.|.++++..+++...- ..-...|.|+++.+. ..+++.|.. |++|+|
T Consensus 110 ~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l-~~h~~~V~~v~~~~~-----------~~~l~sgs~-D~~i~i 176 (410)
T 1vyh_C 110 PVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTL-KGHTDSVQDISFDHS-----------GKLLASCSA-DMTIKL 176 (410)
T ss_dssp CEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEE-CCCSSCEEEEEECTT-----------SSEEEEEET-TSCCCE
T ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEE-eccCCcEEEEEEcCC-----------CCEEEEEeC-CCeEEE
Confidence 566666653 344444 5788999888765433211 123467899998652 457888887 999999
Q ss_pred EeCCCcceEEeecCCC-CCCcccEEEEeeCCeeEEEEEECCCcEEEEEEc
Q psy7977 385 LSLPSLEEVCKEPLGG-EIIPRSILMTCFEGHCYLLVALGDGSMFYFSLD 433 (1225)
Q Consensus 385 lsL~~Le~v~~~~L~~-~~~P~SIll~~l~~~~~LlVGl~nG~L~~y~ld 433 (1225)
|++.+.+.+.. +.+ .....++.+. +...+|+.|..||.+..|.+.
T Consensus 177 wd~~~~~~~~~--~~~h~~~V~~v~~~--p~~~~l~s~s~D~~i~~wd~~ 222 (410)
T 1vyh_C 177 WDFQGFECIRT--MHGHDHNVSSVSIM--PNGDHIVSASRDKTIKMWEVQ 222 (410)
T ss_dssp EETTSSCEEEC--CCCCSSCEEEEEEC--SSSSEEEEEETTSEEEEEETT
T ss_pred EeCCCCceeEE--EcCCCCCEEEEEEe--CCCCEEEEEeCCCeEEEEECC
Confidence 99987654432 211 1111233332 245689999999999998875
No 93
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=94.47 E-value=7.4 Score=43.06 Aligned_cols=130 Identities=8% Similarity=0.070 Sum_probs=78.6
Q ss_pred CcEEEEecCCcceeeeecCCCCCcEEEEEec--CCEEEEE-ECCeEEEEEeeccc-eeEEeeeccCceeEEEEeccCCCC
Q psy7977 285 SAAILISTESKARVSSWEPPNGKSISVVSCN--KNQVLCA-TGCDVYYLEVHGSE-IKQLAHRALEYEVACLDISPLSNE 360 (1225)
Q Consensus 285 ~~IRli~~~~~~~i~eW~~p~g~~Iv~As~n--~~~VlVa-sgg~Lv~feid~~~-L~ev~~~~l~~eIScLai~~~~~~ 360 (1225)
..|++.+...++.+..+... ...|.+.+.. +.+++.+ .++.+.++++...+ +...........|+|+++.+.
T Consensus 206 ~~v~~wd~~~~~~~~~~~~h-~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~--- 281 (340)
T 1got_B 206 ASAKLWDVREGMCRQTFTGH-ESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKS--- 281 (340)
T ss_dssp SCEEEEETTTCSEEEEECCC-SSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTT---
T ss_pred CcEEEEECCCCeeEEEEcCC-cCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCC---
Confidence 45777776655555555432 3357776665 4555555 57899999876542 222222223346888888652
Q ss_pred CCCCccccCcEEEEEEecCCeEEEEeCCCcceEEeecCCCCCCcccEEEEeeCCeeEEEEEECCCcEEEE
Q psy7977 361 ETSSEPAKAQLAAVGLWTDISARLLSLPSLEEVCKEPLGGEIIPRSILMTCFEGHCYLLVALGDGSMFYF 430 (1225)
Q Consensus 361 ~~~~~~~~s~~laVG~w~d~tv~IlsL~~Le~v~~~~L~~~~~P~SIll~~l~~~~~LlVGl~nG~L~~y 430 (1225)
..+++.|.. |++|++|++...+.+..-.-. .....++.+. +...+|..|-.||.+..+
T Consensus 282 --------g~~l~~g~~-d~~i~vwd~~~~~~~~~~~~h-~~~v~~~~~s--~dg~~l~s~s~D~~i~iW 339 (340)
T 1got_B 282 --------GRLLLAGYD-DFNCNVWDALKADRAGVLAGH-DNRVSCLGVT--DDGMAVATGSWDSFLKIW 339 (340)
T ss_dssp --------SSEEEEEET-TSEEEEEETTTCCEEEEEECC-SSCEEEEEEC--TTSSCEEEEETTSCEEEE
T ss_pred --------CCEEEEECC-CCeEEEEEcccCcEeeEeecC-CCcEEEEEEc--CCCCEEEEEcCCccEEec
Confidence 568889987 999999999765543321100 1111223222 245678888889888665
No 94
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=94.43 E-value=3.3 Score=51.90 Aligned_cols=117 Identities=15% Similarity=0.018 Sum_probs=69.8
Q ss_pred cEEEEEec--CCEEEEE-ECCeEEEEEeeccceeEEeee-ccCceeEEEEeccCCCCCCCCccccCcEEEEEEecCCeEE
Q psy7977 308 SISVVSCN--KNQVLCA-TGCDVYYLEVHGSEIKQLAHR-ALEYEVACLDISPLSNEETSSEPAKAQLAAVGLWTDISAR 383 (1225)
Q Consensus 308 ~Iv~As~n--~~~VlVa-sgg~Lv~feid~~~L~ev~~~-~l~~eIScLai~~~~~~~~~~~~~~s~~laVG~w~d~tv~ 383 (1225)
.|.+.+.+ +++++.+ .++.|.++.+..+........ .-...|.|++..+.. ..++++.|.. ||+|+
T Consensus 11 ~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~---------~~~~l~s~s~-Dg~I~ 80 (753)
T 3jro_A 11 LIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPK---------FGTILASCSY-DGKVL 80 (753)
T ss_dssp CEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTT---------SCSEEEEEET-TSCEE
T ss_pred eeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCC---------CCCEEEEEeC-CCeEE
Confidence 35554443 3445555 578888888764332222222 235678999986531 2568888887 99999
Q ss_pred EEeCCCcceEEeecCCC-CCCcccEEEEeeCCeeEEEEEECCCcEEEEEEcC
Q psy7977 384 LLSLPSLEEVCKEPLGG-EIIPRSILMTCFEGHCYLLVALGDGSMFYFSLDP 434 (1225)
Q Consensus 384 IlsL~~Le~v~~~~L~~-~~~P~SIll~~l~~~~~LlVGl~nG~L~~y~ld~ 434 (1225)
+|++.+.+......+.. .....++.+..-+...+|+.|..||.+..|.+..
T Consensus 81 vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~ 132 (753)
T 3jro_A 81 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKE 132 (753)
T ss_dssp EEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCS
T ss_pred EEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeec
Confidence 99997643212222211 1122233332211156899999999999998764
No 95
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=94.41 E-value=7.5 Score=42.89 Aligned_cols=132 Identities=12% Similarity=0.077 Sum_probs=80.4
Q ss_pred CcEEEEecCCcceeeeecCCCCCcEEEEEe--cCCEEEEE-ECCeEEEEEeeccceeEEeeeccCceeEEEEeccCCCCC
Q psy7977 285 SAAILISTESKARVSSWEPPNGKSISVVSC--NKNQVLCA-TGCDVYYLEVHGSEIKQLAHRALEYEVACLDISPLSNEE 361 (1225)
Q Consensus 285 ~~IRli~~~~~~~i~eW~~p~g~~Iv~As~--n~~~VlVa-sgg~Lv~feid~~~L~ev~~~~l~~eIScLai~~~~~~~ 361 (1225)
..||+.+...++.+..+..... .+...+. .+.+++.+ .++.+.++.+..++... ....-...+.|++..+-
T Consensus 102 ~~i~lWd~~~~~~~~~~~~~~~-~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~-~~~~~~~~v~~~~~spd---- 175 (321)
T 3ow8_A 102 AHIRLWDLENGKQIKSIDAGPV-DAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEY-SLDTRGKFILSIAYSPD---- 175 (321)
T ss_dssp SEEEEEETTTTEEEEEEECCTT-CCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEE-EEECSSSCEEEEEECTT----
T ss_pred CcEEEEECCCCCEEEEEeCCCc-cEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeE-EecCCCceEEEEEECCC----
Confidence 4567777665555555543221 2333333 34555555 57888888876543221 11123456888888652
Q ss_pred CCCccccCcEEEEEEecCCeEEEEeCCCcceEEeecCCCCCCcccEEEEeeCCeeEEEEEECCCcEEEEEEc
Q psy7977 362 TSSEPAKAQLAAVGLWTDISARLLSLPSLEEVCKEPLGGEIIPRSILMTCFEGHCYLLVALGDGSMFYFSLD 433 (1225)
Q Consensus 362 ~~~~~~~s~~laVG~w~d~tv~IlsL~~Le~v~~~~L~~~~~P~SIll~~l~~~~~LlVGl~nG~L~~y~ld 433 (1225)
..+++.|.. |++|++|++.+.+.+....-. .....++.+.. ...+|+.|..||.+..|.+.
T Consensus 176 -------g~~lasg~~-dg~i~iwd~~~~~~~~~~~~h-~~~v~~l~~sp--d~~~l~s~s~dg~i~iwd~~ 236 (321)
T 3ow8_A 176 -------GKYLASGAI-DGIINIFDIATGKLLHTLEGH-AMPIRSLTFSP--DSQLLVTASDDGYIKIYDVQ 236 (321)
T ss_dssp -------SSEEEEEET-TSCEEEEETTTTEEEEEECCC-SSCCCEEEECT--TSCEEEEECTTSCEEEEETT
T ss_pred -------CCEEEEEcC-CCeEEEEECCCCcEEEEEccc-CCceeEEEEcC--CCCEEEEEcCCCeEEEEECC
Confidence 468899987 999999999876554432111 12234555432 45689999999999998865
No 96
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=94.39 E-value=8.7 Score=43.52 Aligned_cols=76 Identities=12% Similarity=0.157 Sum_probs=45.0
Q ss_pred CceeEEEEeccCCCCCCCCccccCcEEEEEEecCCeEEEEeCCCcc-eEEeecCCC---CCCcccEEEEeeC-Ce-eEEE
Q psy7977 346 EYEVACLDISPLSNEETSSEPAKAQLAAVGLWTDISARLLSLPSLE-EVCKEPLGG---EIIPRSILMTCFE-GH-CYLL 419 (1225)
Q Consensus 346 ~~eIScLai~~~~~~~~~~~~~~s~~laVG~w~d~tv~IlsL~~Le-~v~~~~L~~---~~~P~SIll~~l~-~~-~~Ll 419 (1225)
...|.|++..+ ...+++.| . |++|++|++..-. .+....+.. ......+.-+.+. .. .+|+
T Consensus 177 ~~~v~~~~~~~-----------~~~~l~s~-~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~ 243 (447)
T 3dw8_B 177 TYHINSISINS-----------DYETYLSA-D-DLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFV 243 (447)
T ss_dssp SSCCCEEEECT-----------TSSEEEEE-C-SSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEE
T ss_pred CcceEEEEEcC-----------CCCEEEEe-C-CCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEE
Confidence 45677777765 24577777 6 9999999997322 221111100 0111223223332 33 6899
Q ss_pred EEECCCcEEEEEEcC
Q psy7977 420 VALGDGSMFYFSLDP 434 (1225)
Q Consensus 420 VGl~nG~L~~y~ld~ 434 (1225)
.|..||.+..|.+..
T Consensus 244 s~~~dg~i~iwd~~~ 258 (447)
T 3dw8_B 244 YSSSKGTIRLCDMRA 258 (447)
T ss_dssp EEETTSCEEEEETTT
T ss_pred EEeCCCeEEEEECcC
Confidence 999999999988753
No 97
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=94.37 E-value=7.2 Score=42.49 Aligned_cols=261 Identities=13% Similarity=0.096 Sum_probs=132.2
Q ss_pred cceeEEEecC-CeEEEEeecC-----CeEEEEEeeCCCCCCCceEEEeeeeccccceeeEEeeccccCCccEEEEEecCC
Q psy7977 121 IPECLTYLDN-GVVFVGSRLG-----DSQLVKLNRSPDENGTYVSVMESFTNLAPIIDMVVVDLERQGQGQLVTCSGGFK 194 (1225)
Q Consensus 121 ~~SsL~~L~~-g~LFvGS~~G-----DS~L~~i~~~~ddd~~~l~v~d~l~NlgPI~D~~v~d~~~~~~~qLva~sG~g~ 194 (1225)
.|..+.+-.+ +++|+++..| +..++.|.... .+++..++.-+....+.+... ...++++++ .
T Consensus 42 ~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~------~~~~~~~~~~~~~~~~~~s~d----g~~l~v~~~--~ 109 (353)
T 3vgz_A 42 GAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVT------LEVTQAIHNDLKPFGATINNT----TQTLWFGNT--V 109 (353)
T ss_dssp SEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTT------CCEEEEEEESSCCCSEEEETT----TTEEEEEET--T
T ss_pred CccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCC------CeEEEEEecCCCcceEEECCC----CCEEEEEec--C
Confidence 3455555545 4888888764 67888886542 344555554444555555331 123555554 3
Q ss_pred CccEEEEeecceeeEEEEeeCCCcc--------eEeEeeeCCCCCCccEEEEEc-CCceEEEEEcCc---eeeeec----
Q psy7977 195 EGSLRIIRNGIGIEEHACIDLPGIK--------GIWALSIGSPKNLDNTLVLSF-VGHTRVLTLSGA---EVEETE---- 258 (1225)
Q Consensus 195 ~GsLrilR~GI~~~~~~s~eLpgv~--------~iWtl~~~~~~~~d~yLVlSf-~~~T~Vl~i~ge---~veEv~---- 258 (1225)
++.+.++...= -+.+..+++++.. ..+.+.... ...+++++. .....|+.++.+ .+..+.
T Consensus 110 ~~~v~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~---dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~ 185 (353)
T 3vgz_A 110 NSAVTAIDAKT-GEVKGRLVLDDRKRTEEVRPLQPRELVADD---ATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGK 185 (353)
T ss_dssp TTEEEEEETTT-CCEEEEEESCCCCCCSSCCCCEEEEEEEET---TTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCT
T ss_pred CCEEEEEeCCC-CeeEEEEecCCCccccccCCCCCceEEECC---CCCEEEEEecCCCceEEEEcCCCCceEEEecCCCC
Confidence 45777765321 1233444443211 133333322 234555554 334445555433 122222
Q ss_pred ---cCCcccccCeEEEEeeCCCeEEEEccCcEEEEecCCcceeeeecCCC---CCcEEEEEe--cCCEEEEE--ECCeEE
Q psy7977 259 ---MGGFTSDQQTFYCGNVDPRTVLQVTPSAAILISTESKARVSSWEPPN---GKSISVVSC--NKNQVLCA--TGCDVY 328 (1225)
Q Consensus 259 ---~sgF~~~~~TL~ag~l~~~~iVQVT~~~IRli~~~~~~~i~eW~~p~---g~~Iv~As~--n~~~VlVa--sgg~Lv 328 (1225)
...|..+...|+++.. ...|.+++...++.+..+..+. ...+...+. .+.+++++ .++.|.
T Consensus 186 ~~~~~~~s~dg~~l~~~~~---------~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~ 256 (353)
T 3vgz_A 186 MSTGLALDSEGKRLYTTNA---------DGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVL 256 (353)
T ss_dssp TCCCCEEETTTTEEEEECT---------TSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEE
T ss_pred ccceEEECCCCCEEEEEcC---------CCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEE
Confidence 1123344555555543 2356677776655555554421 112333333 46677776 347888
Q ss_pred EEEeeccceeEEeeeccCceeEEEEeccCCCCCCCCccccCcEEEEEEecCCeEEEEeCCCcceEEeecCCCCCCcccEE
Q psy7977 329 YLEVHGSEIKQLAHRALEYEVACLDISPLSNEETSSEPAKAQLAAVGLWTDISARLLSLPSLEEVCKEPLGGEIIPRSIL 408 (1225)
Q Consensus 329 ~feid~~~L~ev~~~~l~~eIScLai~~~~~~~~~~~~~~s~~laVG~w~d~tv~IlsL~~Le~v~~~~L~~~~~P~SIl 408 (1225)
.+++..+++.. ...... ..++++.+ ..++++++.+.+++|.+|++.+.+.+.....+ ..|.++.
T Consensus 257 ~~d~~~~~~~~--~~~~~~-~~~~~~s~-----------dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~--~~~~~~~ 320 (353)
T 3vgz_A 257 VVDTRNGNILA--KVAAPE-SLAVLFNP-----------ARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTP--THPNSLA 320 (353)
T ss_dssp EEETTTCCEEE--EEECSS-CCCEEEET-----------TTTEEEEEETTTTEEEEEETTTTEEEEEEECC--SEEEEEE
T ss_pred EEECCCCcEEE--EEEcCC-CceEEECC-----------CCCEEEEEECCCCeEEEEECCCCeEEEEEecC--CCCCeEE
Confidence 88776544322 222222 23455543 24568888877999999999876655443332 2344444
Q ss_pred EEeeCCeeEEEEEECC
Q psy7977 409 MTCFEGHCYLLVALGD 424 (1225)
Q Consensus 409 l~~l~~~~~LlVGl~n 424 (1225)
+. .+..+|++...+
T Consensus 321 ~s--~dg~~l~v~~~~ 334 (353)
T 3vgz_A 321 LS--ADGKTLYVSVKQ 334 (353)
T ss_dssp EC--TTSCEEEEEEEC
T ss_pred Ec--CCCCEEEEEEcc
Confidence 32 123345555444
No 98
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=94.36 E-value=9.3 Score=46.96 Aligned_cols=111 Identities=11% Similarity=-0.032 Sum_probs=65.4
Q ss_pred cEEEEEec--CCEEEEE-ECCeEEEEEeeccceeEEeeeccCceeEEEEeccCCCCCCCCccccCcEEEEEEecCCeEEE
Q psy7977 308 SISVVSCN--KNQVLCA-TGCDVYYLEVHGSEIKQLAHRALEYEVACLDISPLSNEETSSEPAKAQLAAVGLWTDISARL 384 (1225)
Q Consensus 308 ~Iv~As~n--~~~VlVa-sgg~Lv~feid~~~L~ev~~~~l~~eIScLai~~~~~~~~~~~~~~s~~laVG~w~d~tv~I 384 (1225)
.|.+.+.+ +.+++.+ .++.|.++++..+.... .-..-...|.|+++.+. ..+++.|.. |++|+|
T Consensus 432 ~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~-~~~~h~~~v~~~~~s~~-----------~~~l~s~s~-D~~i~i 498 (694)
T 3dm0_A 432 FVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTR-RFVGHTKDVLSVAFSLD-----------NRQIVSASR-DRTIKL 498 (694)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE-EEECCSSCEEEEEECTT-----------SSCEEEEET-TSCEEE
T ss_pred cEEEEEECCCCCEEEEEeCCCcEEEEECCCCccee-EEeCCCCCEEEEEEeCC-----------CCEEEEEeC-CCEEEE
Confidence 46655554 3444444 57899998876543221 11223567899998652 346778877 999999
Q ss_pred EeCCCcceEEe-ecCCCCCCcccEEEEeeC---CeeEEEEEECCCcEEEEEEc
Q psy7977 385 LSLPSLEEVCK-EPLGGEIIPRSILMTCFE---GHCYLLVALGDGSMFYFSLD 433 (1225)
Q Consensus 385 lsL~~Le~v~~-~~L~~~~~P~SIll~~l~---~~~~LlVGl~nG~L~~y~ld 433 (1225)
|++..-..... ... ......+..+.+. ...+|+.|..||.+..|.+.
T Consensus 499 wd~~~~~~~~~~~~~--~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~ 549 (694)
T 3dm0_A 499 WNTLGECKYTISEGG--EGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLS 549 (694)
T ss_dssp ECTTSCEEEEECSST--TSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETT
T ss_pred EECCCCcceeeccCC--CCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECC
Confidence 99753221111 111 1111123223332 24689999999999998865
No 99
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=94.15 E-value=10 Score=43.31 Aligned_cols=245 Identities=12% Similarity=0.061 Sum_probs=126.8
Q ss_pred cCcEEEEecCCcceeeeecCC-CCCcEEEEEec--CCEEEEE-ECCeEEEEEeeccceeEEeeeccCceeEEEEeccCCC
Q psy7977 284 PSAAILISTESKARVSSWEPP-NGKSISVVSCN--KNQVLCA-TGCDVYYLEVHGSEIKQLAHRALEYEVACLDISPLSN 359 (1225)
Q Consensus 284 ~~~IRli~~~~~~~i~eW~~p-~g~~Iv~As~n--~~~VlVa-sgg~Lv~feid~~~L~ev~~~~l~~eIScLai~~~~~ 359 (1225)
.+.|++.+..+++........ .+..|++.+.. +.+++.+ .++.|.++++..++.... ...-...+.|++..
T Consensus 124 d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~-~~~h~~~v~~~s~~---- 198 (420)
T 4gga_A 124 DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRN-MTSHSARVGSLSWN---- 198 (420)
T ss_dssp TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE-ECCCSSCEEEEEEE----
T ss_pred CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEE-EeCCCCceEEEeeC----
Confidence 346888887776555554432 33468887775 4566666 688999988875532221 11234566777652
Q ss_pred CCCCCccccCcEEEEEEecCCeEEEEeCCCc-ceEEeecCCCCCCcccEEEEee-CCeeEEEEEECCCcEEEEEEcCCCC
Q psy7977 360 EETSSEPAKAQLAAVGLWTDISARLLSLPSL-EEVCKEPLGGEIIPRSILMTCF-EGHCYLLVALGDGSMFYFSLDPASG 437 (1225)
Q Consensus 360 ~~~~~~~~~s~~laVG~w~d~tv~IlsL~~L-e~v~~~~L~~~~~P~SIll~~l-~~~~~LlVGl~nG~L~~y~ld~~sg 437 (1225)
..+++.|.. |++++++..... ..+....- ....++.... ....+|..+..||.+..+.......
T Consensus 199 ---------~~~l~sgs~-d~~i~~~d~~~~~~~~~~~~~----h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~ 264 (420)
T 4gga_A 199 ---------SYILSSGSR-SGHIHHHDVRVAEHHVATLSG----HSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEG 264 (420)
T ss_dssp ---------TTEEEEEET-TSEEEEEETTSSSCEEEEEEC----CSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSS
T ss_pred ---------CCEEEEEeC-CCceeEeeecccceeeEEecc----cccceeeeeecCCCCeeeeeeccccceEEeeccccc
Confidence 457888887 999999998642 22222111 1122333333 3457899999999999887654322
Q ss_pred ccccceeeeecCccceEEEEeeCCceEEEEe--c--CCcEEEEEc-CCeeEEeecccccccccccCCCCCCCCeEEEEe-
Q psy7977 438 RLTDKKKVTLGTQPTVLKTFRSLSTTNVFAC--S--DRPTVIYSS-NHKLVFSNVNLRQVNHMCSLNAESYPDSLALAT- 511 (1225)
Q Consensus 438 ~Ls~~k~~~LG~~pV~L~~~~~~g~~~Vfa~--s--drP~liyss-~g~l~~~pl~~~~v~~~s~F~se~~p~glv~vs- 511 (1225)
.....+...-...+|.-..+...+ ..++++ | |+-.-++.- .+.....--....+.+++ |. ...+.++.+.
T Consensus 265 ~~~~~~~~~~~~~~V~~~~~~p~~-~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~~v~~~~-~~--~~~~~lv~~sg 340 (420)
T 4gga_A 265 GWVPLQTFTQHQGAVKAVAWCPWQ-SNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSIL-WS--PHYKELISGHG 340 (420)
T ss_dssp CSCCSEEECCCSSCEEEEEECTTC-TTEEEEEECTTTCEEEEEETTTTEEEEEEECSSCEEEEE-EE--TTTTEEEEEEC
T ss_pred cceeeeeecccCCceeeeeeCCCc-ccEEEEEeecCCCEEEEEeCCccccceeeccccceeeee-ec--CCCCeEEEEEe
Confidence 111111111222334433332222 222222 2 222223322 222221111111111111 11 1123455554
Q ss_pred --CCeEEEEEEcCCCCeeeEEEeC-CCcccEEEEecCCCEEEEEE
Q psy7977 512 --DSTFTFGTIDEIQKLHIRTVPL-GEAPRRIAYQESSQTFGVIT 553 (1225)
Q Consensus 512 --~~~LrI~~i~~~~~l~ir~IpL-g~TprrIay~p~s~~~vV~t 553 (1225)
++.++|-.++.... +.++.= ...+..++++|..+.++.+.
T Consensus 341 ~~d~~I~iwd~~~~~~--v~~l~gH~~~V~~l~~spdg~~l~S~s 383 (420)
T 4gga_A 341 FAQNQLVIWKYPTMAK--VAELKGHTSRVLSLTMSPDGATVASAA 383 (420)
T ss_dssp TTTCCEEEEETTTCCE--EEEECCCSSCEEEEEECTTSSCEEEEE
T ss_pred cCCCEEEEEECCCCcE--EEEEcCCCCCEEEEEEcCCCCEEEEEe
Confidence 46788888765432 333432 24678999999999877765
No 100
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=94.10 E-value=9.3 Score=42.74 Aligned_cols=189 Identities=11% Similarity=0.080 Sum_probs=94.6
Q ss_pred CceeEEEEeccCCCCCCCCccccCcEEEEEEecCCeEEEEeCCCcceEEeecCCCCCCcccEEEEeeCCeeEEEEEECCC
Q psy7977 346 EYEVACLDISPLSNEETSSEPAKAQLAAVGLWTDISARLLSLPSLEEVCKEPLGGEIIPRSILMTCFEGHCYLLVALGDG 425 (1225)
Q Consensus 346 ~~eIScLai~~~~~~~~~~~~~~s~~laVG~w~d~tv~IlsL~~Le~v~~~~L~~~~~P~SIll~~l~~~~~LlVGl~nG 425 (1225)
...|.|+++.+. ..+++.|.. |++|+||+..+.+.......+. ....++.+. +...+|..|-.||
T Consensus 64 ~~~V~~~~~s~d-----------~~~l~s~s~-Dg~v~vWd~~~~~~~~~~~~~~-~~v~~~~~s--p~g~~lasg~~d~ 128 (354)
T 2pbi_B 64 GNKVLCMDWCKD-----------KRRIVSSSQ-DGKVIVWDSFTTNKEHAVTMPC-TWVMACAYA--PSGCAIACGGLDN 128 (354)
T ss_dssp SSCEEEEEECTT-----------SSEEEEEET-TSEEEEEETTTCCEEEEEECSS-SCCCEEEEC--TTSSEEEEESTTS
T ss_pred CCeEEEEEECCC-----------CCEEEEEeC-CCeEEEEECCCCCcceEEecCC-CCEEEEEEC--CCCCEEEEeeCCC
Confidence 467899998752 457888887 9999999987655444333321 112233322 3567899999999
Q ss_pred cEEEEEEcCCCCc--cccceeeeecCccceEEEEeeCCceEEEEe-cCCcEEEEEc-CCeeE-EeecccccccccccCCC
Q psy7977 426 SMFYFSLDPASGR--LTDKKKVTLGTQPTVLKTFRSLSTTNVFAC-SDRPTVIYSS-NHKLV-FSNVNLRQVNHMCSLNA 500 (1225)
Q Consensus 426 ~L~~y~ld~~sg~--Ls~~k~~~LG~~pV~L~~~~~~g~~~Vfa~-sdrP~liyss-~g~l~-~~pl~~~~v~~~s~F~s 500 (1225)
.+..|.+...... ....+....-..++.-..+...+. .++.. .+....++.- .+++. ...-....+.++ .|+.
T Consensus 129 ~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~-~~~~ 206 (354)
T 2pbi_B 129 KCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDM-QILTASGDGTCALWDVESGQLLQSFHGHGADVLCL-DLAP 206 (354)
T ss_dssp EEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSS-EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEE-EECC
T ss_pred CEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCC-EEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEE-EEEe
Confidence 9999987543111 111111111122333333322222 22222 2333333332 22211 111011112111 1211
Q ss_pred CCCCCeEEEEe-CCeEEEEEEcCCCCeeeEEEeC-CCcccEEEEecCCCEEEEEE
Q psy7977 501 ESYPDSLALAT-DSTFTFGTIDEIQKLHIRTVPL-GEAPRRIAYQESSQTFGVIT 553 (1225)
Q Consensus 501 e~~p~glv~vs-~~~LrI~~i~~~~~l~ir~IpL-g~TprrIay~p~s~~~vV~t 553 (1225)
...++.++... ++.+++-.+.... .++.+.- ...++.++++|..+.++.+.
T Consensus 207 ~~~g~~l~sgs~Dg~v~~wd~~~~~--~~~~~~~h~~~v~~v~~~p~~~~l~s~s 259 (354)
T 2pbi_B 207 SETGNTFVSGGCDKKAMVWDMRSGQ--CVQAFETHESDVNSVRYYPSGDAFASGS 259 (354)
T ss_dssp CSSCCEEEEEETTSCEEEEETTTCC--EEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred CCCCCEEEEEeCCCeEEEEECCCCc--EEEEecCCCCCeEEEEEeCCCCEEEEEe
Confidence 11122344333 5678887765432 3344443 34678899999888877775
No 101
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=94.03 E-value=5.4 Score=43.33 Aligned_cols=103 Identities=9% Similarity=-0.032 Sum_probs=59.9
Q ss_pred CCEEEEE--ECCeEEEEEeeccceeEEeeeccCc--eeEEEEeccCCCCCCCCccccCcEEEEEEecCCeEEEEeCCCcc
Q psy7977 316 KNQVLCA--TGCDVYYLEVHGSEIKQLAHRALEY--EVACLDISPLSNEETSSEPAKAQLAAVGLWTDISARLLSLPSLE 391 (1225)
Q Consensus 316 ~~~VlVa--sgg~Lv~feid~~~L~ev~~~~l~~--eIScLai~~~~~~~~~~~~~~s~~laVG~w~d~tv~IlsL~~Le 391 (1225)
++.++++ .+++|..+++..+++. ....+.. .+.++++.+- .+.+++....+++|.+|++.+.+
T Consensus 10 ~~~~~v~~~~~~~v~~~d~~~~~~~--~~~~~~~~~~~~~~~~s~d-----------g~~~~v~~~~~~~i~~~d~~t~~ 76 (349)
T 1jmx_B 10 GHEYMIVTNYPNNLHVVDVASDTVY--KSCVMPDKFGPGTAMMAPD-----------NRTAYVLNNHYGDIYGIDLDTCK 76 (349)
T ss_dssp TCEEEEEEETTTEEEEEETTTTEEE--EEEECSSCCSSCEEEECTT-----------SSEEEEEETTTTEEEEEETTTTE
T ss_pred CCEEEEEeCCCCeEEEEECCCCcEE--EEEecCCCCCCceeEECCC-----------CCEEEEEeCCCCcEEEEeCCCCc
Confidence 4455554 4677777776544332 2223333 4667776541 35666776668999999998766
Q ss_pred eEEeecCCC-----CCCcccEEEEeeCCeeEEEEEECC------------CcEEEEEEc
Q psy7977 392 EVCKEPLGG-----EIIPRSILMTCFEGHCYLLVALGD------------GSMFYFSLD 433 (1225)
Q Consensus 392 ~v~~~~L~~-----~~~P~SIll~~l~~~~~LlVGl~n------------G~L~~y~ld 433 (1225)
.+....++. ...|..+.+.. ...+|+++..+ +.+..|.+.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~sp--dg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~ 133 (349)
T 1jmx_B 77 NTFHANLSSVPGEVGRSMYSFAISP--DGKEVYATVNPTQRLNDHYVVKPPRLEVFSTA 133 (349)
T ss_dssp EEEEEESCCSTTEEEECSSCEEECT--TSSEEEEEEEEEEECSSCEEECCCEEEEEEGG
T ss_pred EEEEEEcccccccccccccceEECC--CCCEEEEEcccccccccccccCCCeEEEEECC
Confidence 554434421 11255665542 34567777754 777777654
No 102
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=94.01 E-value=5.5 Score=42.65 Aligned_cols=78 Identities=13% Similarity=-0.026 Sum_probs=50.1
Q ss_pred CceeEEEEeccCCCCCCCCccccCcEEEEEEecCCeEEEEeCCCcce--EEeecCCC-CCCcccEEEEeeCCeeEEEEEE
Q psy7977 346 EYEVACLDISPLSNEETSSEPAKAQLAAVGLWTDISARLLSLPSLEE--VCKEPLGG-EIIPRSILMTCFEGHCYLLVAL 422 (1225)
Q Consensus 346 ~~eIScLai~~~~~~~~~~~~~~s~~laVG~w~d~tv~IlsL~~Le~--v~~~~L~~-~~~P~SIll~~l~~~~~LlVGl 422 (1225)
...|+|+++.+- ..+++.|.. |++|+||++..... .....+.. .....++.+..-....+|+.|.
T Consensus 11 ~~~v~~~~~~~~-----------~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~ 78 (351)
T 3f3f_A 11 DDLVHDVVYDFY-----------GRHVATCSS-DQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASAS 78 (351)
T ss_dssp SSCEEEEEECSS-----------SSEEEEEET-TSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEE
T ss_pred ccceeEEEEcCC-----------CCEEEEeeC-CCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEc
Confidence 467899998752 467888887 99999999975321 11111211 1122334333211257899999
Q ss_pred CCCcEEEEEEcCC
Q psy7977 423 GDGSMFYFSLDPA 435 (1225)
Q Consensus 423 ~nG~L~~y~ld~~ 435 (1225)
.||.+..|.++..
T Consensus 79 ~dg~v~vwd~~~~ 91 (351)
T 3f3f_A 79 YDKTVKLWEEDPD 91 (351)
T ss_dssp TTSCEEEEEECTT
T ss_pred CCCeEEEEecCCC
Confidence 9999999998753
No 103
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=94.00 E-value=0.66 Score=52.31 Aligned_cols=97 Identities=13% Similarity=0.174 Sum_probs=60.8
Q ss_pred ECCeEEEEEeecccee-EEeeeccCceeEEEEeccCCCCCCCCccccCcEEEEEEecCCeEEEEeCCC----cceEEeec
Q psy7977 323 TGCDVYYLEVHGSEIK-QLAHRALEYEVACLDISPLSNEETSSEPAKAQLAAVGLWTDISARLLSLPS----LEEVCKEP 397 (1225)
Q Consensus 323 sgg~Lv~feid~~~L~-ev~~~~l~~eIScLai~~~~~~~~~~~~~~s~~laVG~w~d~tv~IlsL~~----Le~v~~~~ 397 (1225)
.++.|.++++...+.. ..........|.|++..+- ..+++.|.. |++|++|++.. .+.+..
T Consensus 43 ~d~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~-----------~~~l~~~~~-dg~v~vw~~~~~~~~~~~~~~-- 108 (416)
T 2pm9_A 43 TDSSLELWSLLAADSEKPIASLQVDSKFNDLDWSHN-----------NKIIAGALD-NGSLELYSTNEANNAINSMAR-- 108 (416)
T ss_dssp CCCCCEEEESSSGGGCSCSCCCCCSSCEEEEEECSS-----------SSCEEEEES-SSCEEEECCSSTTSCCCEEEE--
T ss_pred CCCeEEEEEccCCCCCcEEEEEecCCceEEEEECCC-----------CCeEEEEcc-CCeEEEeecccccccccchhh--
Confidence 4677888887654321 2222334678999998652 457888887 99999999976 222222
Q ss_pred CCC-CCCcccEEEEeeCCeeEEEEEECCCcEEEEEEcC
Q psy7977 398 LGG-EIIPRSILMTCFEGHCYLLVALGDGSMFYFSLDP 434 (1225)
Q Consensus 398 L~~-~~~P~SIll~~l~~~~~LlVGl~nG~L~~y~ld~ 434 (1225)
+.. .....++.+..- +..+|+.|..||.+..|.+..
T Consensus 109 ~~~h~~~v~~~~~~~~-~~~~l~s~~~dg~v~iwd~~~ 145 (416)
T 2pm9_A 109 FSNHSSSVKTVKFNAK-QDNVLASGGNNGEIFIWDMNK 145 (416)
T ss_dssp CCCSSSCCCEEEECSS-STTBEEEECSSSCEEBCBTTT
T ss_pred ccCCccceEEEEEcCC-CCCEEEEEcCCCeEEEEECCC
Confidence 211 122234444321 256789999999999887754
No 104
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=93.92 E-value=20 Score=45.99 Aligned_cols=107 Identities=15% Similarity=0.092 Sum_probs=67.2
Q ss_pred cEEEEEec--CCEEEEE-ECCeEEEEEeeccceeEEeeeccCceeEEEEeccCCCCCCCCccccCcEEEEEEecCCeEEE
Q psy7977 308 SISVVSCN--KNQVLCA-TGCDVYYLEVHGSEIKQLAHRALEYEVACLDISPLSNEETSSEPAKAQLAAVGLWTDISARL 384 (1225)
Q Consensus 308 ~Iv~As~n--~~~VlVa-sgg~Lv~feid~~~L~ev~~~~l~~eIScLai~~~~~~~~~~~~~~s~~laVG~w~d~tv~I 384 (1225)
.|.+.+.. +.+++.+ .++.|.++.....+. .....-...|.++++.+ .++++.+.. |++|+|
T Consensus 19 ~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~--~~~~~~~~~V~~l~fsp------------g~~L~S~s~-D~~v~l 83 (902)
T 2oaj_A 19 KPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEV--VIKLEDRSAIKEMRFVK------------GIYLVVINA-KDTVYV 83 (902)
T ss_dssp CEEEEEEETTTTEEEEEETTSEEEEECSTTCEE--EEECSSCCCEEEEEEET------------TTEEEEEET-TCEEEE
T ss_pred CcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEE--EEEcCCCCCEEEEEEcC------------CCEEEEEEC-cCeEEE
Confidence 46655554 3455555 578888886543222 11122246788998865 236777776 999999
Q ss_pred EeCCCcceEEeecCCCCCCcccEEEEee-CCeeEEEEEECCCcEEEEEEcC
Q psy7977 385 LSLPSLEEVCKEPLGGEIIPRSILMTCF-EGHCYLLVALGDGSMFYFSLDP 434 (1225)
Q Consensus 385 lsL~~Le~v~~~~L~~~~~P~SIll~~l-~~~~~LlVGl~nG~L~~y~ld~ 434 (1225)
|++.+-+.+...... ..+.-+.+ ....+|++|..||.+..|.++.
T Consensus 84 Wd~~~~~~~~~~~~~-----~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~ 129 (902)
T 2oaj_A 84 LSLYSQKVLTTVFVP-----GKITSIDTDASLDWMLIGLQNGSMIVYDIDR 129 (902)
T ss_dssp EETTTCSEEEEEECS-----SCEEEEECCTTCSEEEEEETTSCEEEEETTT
T ss_pred EECCCCcEEEEEcCC-----CCEEEEEECCCCCEEEEEcCCCcEEEEECCC
Confidence 999865544332221 12332333 3567899999999999988753
No 105
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=93.65 E-value=11 Score=41.90 Aligned_cols=237 Identities=10% Similarity=0.091 Sum_probs=116.5
Q ss_pred CCeEEEEcc--CcEEEEecCCcceeeeecCCCCCcEEEEEe-cCCEEEEEE--CCeEEEEEeeccceeEEeeeccCc---
Q psy7977 276 PRTVLQVTP--SAAILISTESKARVSSWEPPNGKSISVVSC-NKNQVLCAT--GCDVYYLEVHGSEIKQLAHRALEY--- 347 (1225)
Q Consensus 276 ~~~iVQVT~--~~IRli~~~~~~~i~eW~~p~g~~Iv~As~-n~~~VlVas--gg~Lv~feid~~~L~ev~~~~l~~--- 347 (1225)
++.+..++. +.|.+++..+++.+..+.. +......++ .+..+.+++ ++.|..+.....++. ...+...
T Consensus 53 ~~~lyv~~~~~~~v~viD~~t~~~~~~i~~--~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~--~~i~~g~~~~ 128 (328)
T 3dsm_A 53 DGIGWIVVNNSHVIFAIDINTFKEVGRITG--FTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEIT--GYIECPDMDM 128 (328)
T ss_dssp TTEEEEEEGGGTEEEEEETTTCCEEEEEEC--CSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEE--EEEECTTCCT
T ss_pred CCEEEEEEcCCCEEEEEECcccEEEEEcCC--CCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEE--EEEEcCCccc
Confidence 344444443 5688888877666666632 222333333 455777774 678877765543332 2333333
Q ss_pred ---eeEEEEeccCCCCCCCCccccCcEEEEEEe-cCCeEEEEeCCCcceEEeecCCCCCCcccEEEEeeCCeeEEEEEEC
Q psy7977 348 ---EVACLDISPLSNEETSSEPAKAQLAAVGLW-TDISARLLSLPSLEEVCKEPLGGEIIPRSILMTCFEGHCYLLVALG 423 (1225)
Q Consensus 348 ---eIScLai~~~~~~~~~~~~~~s~~laVG~w-~d~tv~IlsL~~Le~v~~~~L~~~~~P~SIll~~l~~~~~LlVGl~ 423 (1225)
.+..+++ . ...+.|+.| .+++|.++++.+.+.+....+. ..|..+.+.. .++ ++++..
T Consensus 129 ~~~~p~~i~~-~------------~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g--~~p~~i~~~~-dG~--l~v~~~ 190 (328)
T 3dsm_A 129 ESGSTEQMVQ-Y------------GKYVYVNCWSYQNRILKIDTETDKVVDELTIG--IQPTSLVMDK-YNK--MWTITD 190 (328)
T ss_dssp TTCBCCCEEE-E------------TTEEEEEECTTCCEEEEEETTTTEEEEEEECS--SCBCCCEECT-TSE--EEEEBC
T ss_pred cCCCcceEEE-E------------CCEEEEEcCCCCCEEEEEECCCCeEEEEEEcC--CCccceEEcC-CCC--EEEEEC
Confidence 5555655 1 345788888 4899999999876655544442 4577776543 123 444443
Q ss_pred -C----------CcEEEEEEcCCCCccccceeeee--cCccceEEEEeeCCceEEEEecCCcEEEEEcCCeeEEeecccc
Q psy7977 424 -D----------GSMFYFSLDPASGRLTDKKKVTL--GTQPTVLKTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLR 490 (1225)
Q Consensus 424 -n----------G~L~~y~ld~~sg~Ls~~k~~~L--G~~pV~L~~~~~~g~~~Vfa~sdrP~liyss~g~l~~~pl~~~ 490 (1225)
+ +.+ +.+|+.++++.. ...+ |..|-.+. +.. ....++++...-|.+-...+++.-.+.-
T Consensus 191 ~~~~~~~~~~~~~~v--~~id~~t~~v~~--~~~~~~g~~p~~la-~~~-d~~~lyv~~~~v~~~d~~t~~~~~~~~~-- 262 (328)
T 3dsm_A 191 GGYEGSPYGYEAPSL--YRIDAETFTVEK--QFKFKLGDWPSEVQ-LNG-TRDTLYWINNDIWRMPVEADRVPVRPFL-- 262 (328)
T ss_dssp CBCTTCSSCBCCCEE--EEEETTTTEEEE--EEECCTTCCCEEEE-ECT-TSCEEEEESSSEEEEETTCSSCCSSCSB--
T ss_pred CCccCCccccCCceE--EEEECCCCeEEE--EEecCCCCCceeEE-Eec-CCCEEEEEccEEEEEECCCCceeeeeee--
Confidence 2 445 455665565432 1222 33343321 111 1234444443222222222222100000
Q ss_pred cccccccCCCCCCC-CeEEEEeC-----CeEEEEEEcCCCCeeeEEEeCCCcccEEEEe
Q psy7977 491 QVNHMCSLNAESYP-DSLALATD-----STFTFGTIDEIQKLHIRTVPLGEAPRRIAYQ 543 (1225)
Q Consensus 491 ~v~~~s~F~se~~p-~glv~vs~-----~~LrI~~i~~~~~l~ir~IpLg~TprrIay~ 543 (1225)
......|..-.--| ++.+++++ ..=+|..++.. .-.++++++|..|..+++=
T Consensus 263 ~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~~G~~P~~~~~~ 320 (328)
T 3dsm_A 263 EFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFYVGIIPGAFCWK 320 (328)
T ss_dssp CCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEEEEEESEEEEEEE
T ss_pred cCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEEEEEeccCcceEEEe
Confidence 00000010000112 34444443 33345555554 3456889999999998873
No 106
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=93.50 E-value=11 Score=41.62 Aligned_cols=217 Identities=16% Similarity=0.144 Sum_probs=105.6
Q ss_pred CCEEEE-E-ECCeEEEEEeeccc----ee-EEee-eccCceeEEEEeccCCCCCCCCccccCcEEEEEEecCCeEEEEeC
Q psy7977 316 KNQVLC-A-TGCDVYYLEVHGSE----IK-QLAH-RALEYEVACLDISPLSNEETSSEPAKAQLAAVGLWTDISARLLSL 387 (1225)
Q Consensus 316 ~~~VlV-a-sgg~Lv~feid~~~----L~-ev~~-~~l~~eIScLai~~~~~~~~~~~~~~s~~laVG~w~d~tv~IlsL 387 (1225)
+..+++ + .++.|.+.++...+ .. .... ..-...|.|+++.+- ..+++.|.+ |++|++|++
T Consensus 38 d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~-----------~~~l~s~s~-D~~v~lwd~ 105 (343)
T 2xzm_R 38 DSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQE-----------NCFAISSSW-DKTLRLWDL 105 (343)
T ss_dssp CCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSS-----------TTEEEEEET-TSEEEEEET
T ss_pred CCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCC-----------CCEEEEEcC-CCcEEEEEC
Confidence 334444 3 47888888876431 11 1111 123467889988652 457888887 999999999
Q ss_pred CCcceEEeecCCCCCCcccEEEEeeCCeeEEEEEECCCcEEEEEEcCCCCccccceeeeecCccceEEEEeeCCc-----
Q psy7977 388 PSLEEVCKEPLGGEIIPRSILMTCFEGHCYLLVALGDGSMFYFSLDPASGRLTDKKKVTLGTQPTVLKTFRSLST----- 462 (1225)
Q Consensus 388 ~~Le~v~~~~L~~~~~P~SIll~~l~~~~~LlVGl~nG~L~~y~ld~~sg~Ls~~k~~~LG~~pV~L~~~~~~g~----- 462 (1225)
.+.+.+....-. .....++.+. +...+|+.|-.||.+..|.+... ..... ....--..++.-..+...+.
T Consensus 106 ~~~~~~~~~~~h-~~~v~~v~~s--p~~~~l~s~~~d~~i~~wd~~~~-~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~ 180 (343)
T 2xzm_R 106 RTGTTYKRFVGH-QSEVYSVAFS--PDNRQILSAGAEREIKLWNILGE-CKFSS-AEKENHSDWVSCVRYSPIMKSANKV 180 (343)
T ss_dssp TSSCEEEEEECC-CSCEEEEEEC--SSTTEEEEEETTSCEEEEESSSC-EEEEC-CTTTSCSSCEEEEEECCCCCSCSCC
T ss_pred CCCcEEEEEcCC-CCcEEEEEEC--CCCCEEEEEcCCCEEEEEeccCC-ceeee-ecccCCCceeeeeeecccccccccc
Confidence 865543321110 1112233332 24567899999999999987521 00000 00000011222222211110
Q ss_pred ---eEEEEec--CCcEEEEEcCCeeEEeec-ccccccccccCCCCCCCCeEEEEe-CCeEEEEEEcCCCCeeeEEEeCCC
Q psy7977 463 ---TNVFACS--DRPTVIYSSNHKLVFSNV-NLRQVNHMCSLNAESYPDSLALAT-DSTFTFGTIDEIQKLHIRTVPLGE 535 (1225)
Q Consensus 463 ---~~Vfa~s--drP~liyss~g~l~~~pl-~~~~v~~~s~F~se~~p~glv~vs-~~~LrI~~i~~~~~l~ir~IpLg~ 535 (1225)
...|+++ +....++..++.....-. ....+.++ .|+.. ...++... ++.++|-.+.... ...+..+-+.
T Consensus 181 ~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~-~~s~~--g~~l~sgs~dg~v~iwd~~~~~-~~~~~~~~~~ 256 (343)
T 2xzm_R 181 QPFAPYFASVGWDGRLKVWNTNFQIRYTFKAHESNVNHL-SISPN--GKYIATGGKDKKLLIWDILNLT-YPQREFDAGS 256 (343)
T ss_dssp CSSCCEEEEEETTSEEEEEETTTEEEEEEECCSSCEEEE-EECTT--SSEEEEEETTCEEEEEESSCCS-SCSEEEECSS
T ss_pred CCCCCEEEEEcCCCEEEEEcCCCceeEEEcCccccceEE-EECCC--CCEEEEEcCCCeEEEEECCCCc-ccceeecCCC
Confidence 0122222 222223332222211110 01112111 22211 12344443 5688888874332 2344556677
Q ss_pred cccEEEEecCCCEEEEEE
Q psy7977 536 APRRIAYQESSQTFGVIT 553 (1225)
Q Consensus 536 TprrIay~p~s~~~vV~t 553 (1225)
.+..++++|....+++++
T Consensus 257 ~v~~v~~sp~~~~la~~~ 274 (343)
T 2xzm_R 257 TINQIAFNPKLQWVAVGT 274 (343)
T ss_dssp CEEEEEECSSSCEEEEEE
T ss_pred cEEEEEECCCCCEEEEEC
Confidence 899999999988766553
No 107
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=93.48 E-value=12 Score=43.54 Aligned_cols=262 Identities=10% Similarity=0.031 Sum_probs=127.9
Q ss_pred cccCeEEEEeeCCCeEEEEccCcEEEEecCCcceeeeecCCCCCcEEEEEecCCEEEEEE-----------CCeEEEEEe
Q psy7977 264 SDQQTFYCGNVDPRTVLQVTPSAAILISTESKARVSSWEPPNGKSISVVSCNKNQVLCAT-----------GCDVYYLEV 332 (1225)
Q Consensus 264 ~~~~TL~ag~l~~~~iVQVT~~~IRli~~~~~~~i~eW~~p~g~~Iv~As~n~~~VlVas-----------gg~Lv~fei 332 (1225)
.+..++++.+.+... ..+.|.++|..+.+.+..+....+.. ...+-.+.++.+++ ++.+..+..
T Consensus 42 pd~~~vyV~~~~~~~----~~~~V~ViD~~t~~v~~~I~vG~~P~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~ 116 (386)
T 3sjl_D 42 PDARRVYVNDPAHFA----AVTQQFVIDGEAGRVIGMIDGGFLPN-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDP 116 (386)
T ss_dssp CCTTEEEEEECGGGC----SSEEEEEEETTTTEEEEEEEECSSCE-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECT
T ss_pred CCCCEEEEEcCcccC----CCCEEEEEECCCCeEEEEEECCCCCc-EEECCCCCEEEEEcccccccccCCCCCEEEEEEC
Confidence 445566666553100 01367788888777777776433322 33334456666652 123444433
Q ss_pred eccceeEEeeeccC--------ceeEEEEeccCCCCCCCCccccCcEEEEEEec-CCeEEEEeCCCcceEEeecCCCCCC
Q psy7977 333 HGSEIKQLAHRALE--------YEVACLDISPLSNEETSSEPAKAQLAAVGLWT-DISARLLSLPSLEEVCKEPLGGEII 403 (1225)
Q Consensus 333 d~~~L~ev~~~~l~--------~eIScLai~~~~~~~~~~~~~~s~~laVG~w~-d~tv~IlsL~~Le~v~~~~L~~~~~ 403 (1225)
..++.+....++ .....+++++ ..+++.|+... +++|.++++.+.+.+.+..+++
T Consensus 117 --~t~~v~~~I~v~~g~r~~~g~~P~~~a~sp-----------DGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g--- 180 (386)
T 3sjl_D 117 --VTLLPTADIELPDAPRFLVGTYPWMTSLTP-----------DGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD--- 180 (386)
T ss_dssp --TTCCEEEEEEETTCCCCCBSCCGGGEEECT-----------TSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS---
T ss_pred --CCCeEEEEEECCCccccccCCCCceEEEcC-----------CCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC---
Confidence 233333333332 1333455543 24678887643 7899999999888776655542
Q ss_pred cccEEEEeeCCeeEEEEEECCCcEEEEEEcCCCCccccceeee--ecCccceEEE-EeeCCceEEEEecCCc-EEEEEcC
Q psy7977 404 PRSILMTCFEGHCYLLVALGDGSMFYFSLDPASGRLTDKKKVT--LGTQPTVLKT-FRSLSTTNVFACSDRP-TVIYSSN 479 (1225)
Q Consensus 404 P~SIll~~l~~~~~LlVGl~nG~L~~y~ld~~sg~Ls~~k~~~--LG~~pV~L~~-~~~~g~~~Vfa~sdrP-~liyss~ 479 (1225)
...+..-+... ++....||.++...+... +++...++.. .+..|+...+ +...+...+|++.+.- +++-...
T Consensus 181 --~~~~~P~g~~~-~~~~~~DG~~~~v~~~~~-g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~ 256 (386)
T 3sjl_D 181 --CYHIFPTAPDT-FFMHCRDGSLAKVAFGTE-GTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSS 256 (386)
T ss_dssp --EEEEEEEETTE-EEEEETTSCEEEEECCSS-SCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTT
T ss_pred --cceeecCCCce-eEEECCCCCEEEEECCCC-CeEEEeecceeccccccccccceeEcCCCcEEEEeCCCEEEEEECCC
Confidence 11222222223 346678999888776532 3433322211 1223332211 1111122334333221 1111111
Q ss_pred CeeEEe-ecc-ccc--------ccc--cccCCCCCCCCeEEEEeC----------CeEEEEEEcCCCCeeeEEEeCCCcc
Q psy7977 480 HKLVFS-NVN-LRQ--------VNH--MCSLNAESYPDSLALATD----------STFTFGTIDEIQKLHIRTVPLGEAP 537 (1225)
Q Consensus 480 g~l~~~-pl~-~~~--------v~~--~s~F~se~~p~glv~vs~----------~~LrI~~i~~~~~l~ir~IpLg~Tp 537 (1225)
+...+. +++ ... ... ...++ . ...-+|+.. ..=+|.-+|....-.+++|+++..|
T Consensus 257 ~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~-~--~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~~~ 333 (386)
T 3sjl_D 257 GDAKFLPAVEALTEAERADGWRPGGWQQVAYH-R--ALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEI 333 (386)
T ss_dssp SSCEECCCEESSCHHHHHTTEEECSSSCEEEE-T--TTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEE
T ss_pred CcceeecceeccccccccccccCCCcceeeEC-C--CCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECCCCc
Confidence 222111 111 000 000 00111 1 123333321 1356777777777789999999999
Q ss_pred cEEEEecCCC-EEEEEE
Q psy7977 538 RRIAYQESSQ-TFGVIT 553 (1225)
Q Consensus 538 rrIay~p~s~-~~vV~t 553 (1225)
..|+++|..+ .+++..
T Consensus 334 ~~lavs~D~~~~ly~tn 350 (386)
T 3sjl_D 334 DSINVSQDEKPLLYALS 350 (386)
T ss_dssp CEEEECSSSSCEEEEEE
T ss_pred ceEEECCCCCeEEEEEc
Confidence 9999999987 555544
No 108
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=93.45 E-value=10 Score=40.98 Aligned_cols=130 Identities=12% Similarity=0.059 Sum_probs=76.1
Q ss_pred EEEEecCCcceeeeecCCCCCcEEEEEec--CCEEEEE-ECCeEEEEEeeccceeEEeeeccCceeEEEEeccCCCCCCC
Q psy7977 287 AILISTESKARVSSWEPPNGKSISVVSCN--KNQVLCA-TGCDVYYLEVHGSEIKQLAHRALEYEVACLDISPLSNEETS 363 (1225)
Q Consensus 287 IRli~~~~~~~i~eW~~p~g~~Iv~As~n--~~~VlVa-sgg~Lv~feid~~~L~ev~~~~l~~eIScLai~~~~~~~~~ 363 (1225)
|++++...++.+..+... ...|.+++.+ +++++.+ .++.|.++++..++.... -..-...|++++..+.
T Consensus 89 i~vwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~-~~~~~~~v~~~~~~~~------ 160 (312)
T 4ery_A 89 LKIWDVSSGKCLKTLKGH-SNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKT-LPAHSDPVSAVHFNRD------ 160 (312)
T ss_dssp EEEEETTTCCEEEEEECC-SSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEE-ECCCSSCEEEEEECTT------
T ss_pred EEEEECCCCcEEEEEcCC-CCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEE-ecCCCCcEEEEEEcCC------
Confidence 444554443344444322 2245555554 3344444 578888888765432211 1122457888888652
Q ss_pred CccccCcEEEEEEecCCeEEEEeCCCcceEEeecCCCCCCcccEEEEee-CCeeEEEEEECCCcEEEEEEc
Q psy7977 364 SEPAKAQLAAVGLWTDISARLLSLPSLEEVCKEPLGGEIIPRSILMTCF-EGHCYLLVALGDGSMFYFSLD 433 (1225)
Q Consensus 364 ~~~~~s~~laVG~w~d~tv~IlsL~~Le~v~~~~L~~~~~P~SIll~~l-~~~~~LlVGl~nG~L~~y~ld 433 (1225)
..+++.|.. |++|++|++.+.+.+...... .. ..+..+.+ ....+|+.|..||.+..|.+.
T Consensus 161 -----~~~l~~~~~-d~~i~~wd~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~ 222 (312)
T 4ery_A 161 -----GSLIVSSSY-DGLCRIWDTASGQCLKTLIDD--DN-PPVSFVKFSPNGKYILAATLDNTLKLWDYS 222 (312)
T ss_dssp -----SSEEEEEET-TSCEEEEETTTCCEEEEECCS--SC-CCEEEEEECTTSSEEEEEETTTEEEEEETT
T ss_pred -----CCEEEEEeC-CCcEEEEECCCCceeeEEecc--CC-CceEEEEECCCCCEEEEEcCCCeEEEEECC
Confidence 457888887 999999999875544332111 11 12222333 346789999999999998765
No 109
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=93.36 E-value=12 Score=41.55 Aligned_cols=114 Identities=15% Similarity=0.155 Sum_probs=69.9
Q ss_pred CcEEEEEec--CCEEEEE-ECCeEEEEEeeccceeEEeee-ccCceeEEEEeccCCCCCCCCccccCcEEEEEEecCCeE
Q psy7977 307 KSISVVSCN--KNQVLCA-TGCDVYYLEVHGSEIKQLAHR-ALEYEVACLDISPLSNEETSSEPAKAQLAAVGLWTDISA 382 (1225)
Q Consensus 307 ~~Iv~As~n--~~~VlVa-sgg~Lv~feid~~~L~ev~~~-~l~~eIScLai~~~~~~~~~~~~~~s~~laVG~w~d~tv 382 (1225)
..|.+.+.+ +.+++.+ .++.+.+.++..++...+... .-...|.|++..+. .++++.|.. |++|
T Consensus 62 ~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~-----------~~~l~s~s~-D~~v 129 (345)
T 3fm0_A 62 RTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPS-----------GNLLATCSR-DKSV 129 (345)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTT-----------SSEEEEEET-TSCE
T ss_pred CcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCC-----------CCEEEEEEC-CCeE
Confidence 457666664 4455555 578888888765544333322 23567999998762 467888887 9999
Q ss_pred EEEeCCCcceE-EeecCCC-CCCcccEEEEeeCCeeEEEEEECCCcEEEEEEcC
Q psy7977 383 RLLSLPSLEEV-CKEPLGG-EIIPRSILMTCFEGHCYLLVALGDGSMFYFSLDP 434 (1225)
Q Consensus 383 ~IlsL~~Le~v-~~~~L~~-~~~P~SIll~~l~~~~~LlVGl~nG~L~~y~ld~ 434 (1225)
++|++..-+.. ....+.. .....++.+. +...+|..|..||.+..|....
T Consensus 130 ~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~--p~~~~l~s~s~d~~i~~w~~~~ 181 (345)
T 3fm0_A 130 WVWEVDEEDEYECVSVLNSHTQDVKHVVWH--PSQELLASASYDDTVKLYREEE 181 (345)
T ss_dssp EEEEECTTSCEEEEEEECCCCSCEEEEEEC--SSSSCEEEEETTSCEEEEEEET
T ss_pred EEEECCCCCCeEEEEEecCcCCCeEEEEEC--CCCCEEEEEeCCCcEEEEEecC
Confidence 99999753221 1122211 1111223222 2456899999999999998753
No 110
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=93.11 E-value=3 Score=48.14 Aligned_cols=201 Identities=14% Similarity=0.122 Sum_probs=98.2
Q ss_pred ceeEEeeeccCceeEEEEeccCCCCCCCCccccCcEEEEEEecCCeEEEEeCCC----------cceEEeecCCCCCCcc
Q psy7977 336 EIKQLAHRALEYEVACLDISPLSNEETSSEPAKAQLAAVGLWTDISARLLSLPS----------LEEVCKEPLGGEIIPR 405 (1225)
Q Consensus 336 ~L~ev~~~~l~~eIScLai~~~~~~~~~~~~~~s~~laVG~w~d~tv~IlsL~~----------Le~v~~~~L~~~~~P~ 405 (1225)
++...........|+|++..+. ...+++.|.. +++|+||++.. +..+....-. ...+.
T Consensus 118 ~~~~~~~~~h~~~v~~l~~~p~----------~~~~lat~~~-dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h-~~~v~ 185 (430)
T 2xyi_A 118 KIEIEIKINHEGEVNRARYMPQ----------NACVIATKTP-SSDVLVFDYTKHPSKPEPSGECQPDLRLRGH-QKEGY 185 (430)
T ss_dssp CEEEEEEEEESSCCSEEEEETT----------EEEEEEEECS-SSCEEEEEGGGSCSSCCTTCCCCCSEEEECC-SSCCC
T ss_pred ceEEEEEEcCCCcEEEEEECCC----------CCcEEEEECC-CCcEEEEECCCcccccCccccCCCcEEecCC-CCCeE
Confidence 3443344445678999998762 2467888876 99999999964 2222211110 12233
Q ss_pred cEEEEeeCCeeEEEEEECCCcEEEEEEcCCCCc--cccceeeeec-CccceEEEEeeCCceEEEEec--CCcEEEEEcC-
Q psy7977 406 SILMTCFEGHCYLLVALGDGSMFYFSLDPASGR--LTDKKKVTLG-TQPTVLKTFRSLSTTNVFACS--DRPTVIYSSN- 479 (1225)
Q Consensus 406 SIll~~l~~~~~LlVGl~nG~L~~y~ld~~sg~--Ls~~k~~~LG-~~pV~L~~~~~~g~~~Vfa~s--drP~liyss~- 479 (1225)
++.+..- +..+|+.|..||.+..|.+...... .......+.+ ..++.-..+...+ ..+|++| +.-..+|.-+
T Consensus 186 ~l~~~~~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~-~~~l~s~~~dg~i~i~d~~~ 263 (430)
T 2xyi_A 186 GLSWNPN-LNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLH-ESLFGSVADDQKLMIWDTRN 263 (430)
T ss_dssp CEEECTT-STTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSC-TTEEEEEETTSEEEEEETTC
T ss_pred EEEeCCC-CCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCC-CCEEEEEeCCCeEEEEECCC
Confidence 4444321 2238999999999999988642111 0000111112 1223322222212 2333332 3333444322
Q ss_pred C----eeEEeecccccccccccCCCCCCCCeEEEE-eCCeEEEEEEcCCCCeeeEEEe-CCCcccEEEEecCCCEEEEEE
Q psy7977 480 H----KLVFSNVNLRQVNHMCSLNAESYPDSLALA-TDSTFTFGTIDEIQKLHIRTVP-LGEAPRRIAYQESSQTFGVIT 553 (1225)
Q Consensus 480 g----~l~~~pl~~~~v~~~s~F~se~~p~glv~v-s~~~LrI~~i~~~~~l~ir~Ip-Lg~TprrIay~p~s~~~vV~t 553 (1225)
+ ...........+.+++ |+. ..+..++.. .++.+++..+..... .+.++. -...+..++++|..+.+++.+
T Consensus 264 ~~~~~~~~~~~~~~~~v~~i~-~~p-~~~~~l~tg~~dg~v~vwd~~~~~~-~~~~~~~h~~~v~~i~~sp~~~~~l~s~ 340 (430)
T 2xyi_A 264 NNTSKPSHTVDAHTAEVNCLS-FNP-YSEFILATGSADKTVALWDLRNLKL-KLHSFESHKDEIFQVQWSPHNETILASS 340 (430)
T ss_dssp SCSSSCSEEEECCSSCEEEEE-ECS-SCTTEEEEEETTSEEEEEETTCTTS-CSEEEECCSSCEEEEEECSSCTTEEEEE
T ss_pred CCCCcceeEeecCCCCeEEEE-eCC-CCCCEEEEEeCCCeEEEEeCCCCCC-CeEEeecCCCCEEEEEECCCCCCEEEEE
Confidence 1 1111111112222222 221 111223333 357888888876433 334444 456889999999886544433
No 111
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=93.10 E-value=3.5 Score=46.61 Aligned_cols=176 Identities=13% Similarity=0.097 Sum_probs=106.2
Q ss_pred EEEEEEECCCCcEEEEEECCCCCceEEEEEEEecCCCCeEEEEEeeeeCCCCCCCcceEEEEEEEeCCcEEEEE-EEEec
Q psy7977 1005 HNLLIIDQNTFEILHAHQLFPGEYALSLISSKFGEDPNTYFVLGTAVVHPEENEPKQGRIIIFHYDDGKLQQIA-EKEIK 1083 (1225)
Q Consensus 1005 s~irlvdp~t~~~i~~~eL~~nE~~~si~~v~~~~~~~~~lvVGTa~~~~eed~~~~GrI~vf~i~~~kL~lv~-~~ev~ 1083 (1225)
+.|||.|..+.+.+..++-. ..+.++ .|..+ ..+++.|+. +.+.+|....++..... ...-.
T Consensus 157 ~~i~iwd~~~~~~~~~~~~~--~~V~~v---~fspd-g~~l~s~s~-----------~~~~~~~~~~~~~~~~~~~~~~~ 219 (365)
T 4h5i_A 157 AIMRIIDPSDLTEKFEIETR--GEVKDL---HFSTD-GKVVAYITG-----------SSLEVISTVTGSCIARKTDFDKN 219 (365)
T ss_dssp CEEEEEETTTTEEEEEEECS--SCCCEE---EECTT-SSEEEEECS-----------SCEEEEETTTCCEEEEECCCCTT
T ss_pred CEEEEeECCCCcEEEEeCCC--CceEEE---EEccC-CceEEeccc-----------eeEEEEEeccCcceeeeecCCCC
Confidence 58999999999998877632 335554 46543 357777751 23455555444322111 11223
Q ss_pred Cceeeeccc-cCeEEEEe--CC----EEEEEEcCCCce--ee-eeecccceeEEEEEE--EECCEEEEeeccccEEEEEE
Q psy7977 1084 GACYSMCEF-NGKLLASI--NS----TVRLFEWTNEKE--LR-LECSHFNNIIALFLK--VKGDFILVGDLMRSLTLLQY 1151 (1225)
Q Consensus 1084 G~v~al~~f-~G~LLa~v--g~----~l~vy~l~~~~~--L~-~e~~~~~~~i~~~l~--~~g~~IlvGD~~kSv~~l~y 1151 (1225)
+.+++++-- +|+.+++. .. .+++|++...+. ++ ......... +..+. ..|.+|+.|..=.+|.+ |
T Consensus 220 ~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-V~~~~~Spdg~~lasgs~D~~V~i--w 296 (365)
T 4h5i_A 220 WSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKG-ITSMDVDMKGELAVLASNDNSIAL--V 296 (365)
T ss_dssp EEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSC-EEEEEECTTSCEEEEEETTSCEEE--E
T ss_pred CCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCC-eEeEEECCCCCceEEEcCCCEEEE--E
Confidence 456665522 56655543 22 566676654332 11 111111111 23343 45789999988888877 5
Q ss_pred ecCCCeEEEEeccCCCceeEEEEeeeCC-cEEEEcCCCcEEEEEeCCCCC
Q psy7977 1152 KTMEGSFEEISRDYNPNWMTSIEILDDE-LFLGAENSYNLFICQKDSAAT 1200 (1225)
Q Consensus 1152 ~~~~~~L~~~arD~~~~wvta~~~Ld~d-t~l~aD~~gNl~vl~~~~~~~ 1200 (1225)
+.+..+...--..-+..+|++++|-.++ .++.+-.++.+.|...|+.-.
T Consensus 297 d~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~~~ 346 (365)
T 4h5i_A 297 KLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLNYA 346 (365)
T ss_dssp ETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTTTT
T ss_pred ECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCCCc
Confidence 6666666554455677899999998766 577789999999999987644
No 112
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=93.02 E-value=13 Score=41.05 Aligned_cols=222 Identities=9% Similarity=0.004 Sum_probs=108.3
Q ss_pred cEEEEEec--CCEEEEE-ECCeEEEEEeeccceeEEeeeccCceeEEEEeccCCCCCCCCccccCcEEEEEEecCCeEEE
Q psy7977 308 SISVVSCN--KNQVLCA-TGCDVYYLEVHGSEIKQLAHRALEYEVACLDISPLSNEETSSEPAKAQLAAVGLWTDISARL 384 (1225)
Q Consensus 308 ~Iv~As~n--~~~VlVa-sgg~Lv~feid~~~L~ev~~~~l~~eIScLai~~~~~~~~~~~~~~s~~laVG~w~d~tv~I 384 (1225)
.|.+.+.. +.+++-+ .++.+.++++..++.... -..-...|.|+++.+. ..+++.|.. |++|++
T Consensus 78 ~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~-~~~h~~~v~~v~~sp~-----------~~~l~s~~~-d~~i~~ 144 (343)
T 2xzm_R 78 FVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKR-FVGHQSEVYSVAFSPD-----------NRQILSAGA-EREIKL 144 (343)
T ss_dssp CEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEE-EECCCSCEEEEEECSS-----------TTEEEEEET-TSCEEE
T ss_pred ceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEE-EcCCCCcEEEEEECCC-----------CCEEEEEcC-CCEEEE
Confidence 46655554 2344444 478888888765532211 1123567899998752 457888876 999999
Q ss_pred EeCCCcceEEeecCCC-CCCcccEEEEeeC--------CeeEEEEEECCCcEEEEEEcCCCCccccceeeeec-CccceE
Q psy7977 385 LSLPSLEEVCKEPLGG-EIIPRSILMTCFE--------GHCYLLVALGDGSMFYFSLDPASGRLTDKKKVTLG-TQPTVL 454 (1225)
Q Consensus 385 lsL~~Le~v~~~~L~~-~~~P~SIll~~l~--------~~~~LlVGl~nG~L~~y~ld~~sg~Ls~~k~~~LG-~~pV~L 454 (1225)
|++..-.......... .....++.+...+ ...+|..|..||.+..|... ++. ...+-+ ..++.-
T Consensus 145 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~---~~~---~~~~~~h~~~v~~ 218 (343)
T 2xzm_R 145 WNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTN---FQI---RYTFKAHESNVNH 218 (343)
T ss_dssp EESSSCEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETT---TEE---EEEEECCSSCEEE
T ss_pred EeccCCceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCC---Cce---eEEEcCccccceE
Confidence 9986321111111100 0111222222111 12689999999999888722 211 111111 122322
Q ss_pred EEEeeCCceEEEEec-CCcEEEEEc-C-Ce-eEEeecccccccccccCCCCCCCCeEEEEeCCeEEEEEEcCCCCeeeEE
Q psy7977 455 KTFRSLSTTNVFACS-DRPTVIYSS-N-HK-LVFSNVNLRQVNHMCSLNAESYPDSLALATDSTFTFGTIDEIQKLHIRT 530 (1225)
Q Consensus 455 ~~~~~~g~~~Vfa~s-drP~liyss-~-g~-l~~~pl~~~~v~~~s~F~se~~p~glv~vs~~~LrI~~i~~~~~l~ir~ 530 (1225)
..+..+|. .+...| +.-..++.- . +. ..... ....+.+ ..|+.. ..-++..+++.++|..+.......+.+
T Consensus 219 ~~~s~~g~-~l~sgs~dg~v~iwd~~~~~~~~~~~~-~~~~v~~-v~~sp~--~~~la~~~d~~v~iw~~~~~~~~~~~~ 293 (343)
T 2xzm_R 219 LSISPNGK-YIATGGKDKKLLIWDILNLTYPQREFD-AGSTINQ-IAFNPK--LQWVAVGTDQGVKIFNLMTQSKAPVCT 293 (343)
T ss_dssp EEECTTSS-EEEEEETTCEEEEEESSCCSSCSEEEE-CSSCEEE-EEECSS--SCEEEEEESSCEEEEESSSCCSCSEEE
T ss_pred EEECCCCC-EEEEEcCCCeEEEEECCCCcccceeec-CCCcEEE-EEECCC--CCEEEEECCCCEEEEEeCCCCCCceEE
Confidence 22222221 222222 222223321 1 11 01100 0111211 223221 233444567889998887654444333
Q ss_pred EeC------------CCcccEEEEecCCCEEEEEE
Q psy7977 531 VPL------------GEAPRRIAYQESSQTFGVIT 553 (1225)
Q Consensus 531 IpL------------g~TprrIay~p~s~~~vV~t 553 (1225)
++. ......++++|..+.++.++
T Consensus 294 ~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~ 328 (343)
T 2xzm_R 294 IEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGF 328 (343)
T ss_dssp CCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEE
T ss_pred eecCcchhhhhhcCCCCceEEEEECCCCCeEEEec
Confidence 331 23457899999999888886
No 113
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=92.84 E-value=15 Score=41.42 Aligned_cols=250 Identities=11% Similarity=0.106 Sum_probs=121.2
Q ss_pred eeEEEecCC-eEEEEeecCCeEEEEEeeCCC---CCCCceEEEeeeecc-------------ccceeeEEeeccccCCcc
Q psy7977 123 ECLTYLDNG-VVFVGSRLGDSQLVKLNRSPD---ENGTYVSVMESFTNL-------------APIIDMVVVDLERQGQGQ 185 (1225)
Q Consensus 123 SsL~~L~~g-~LFvGS~~GDS~L~~i~~~~d---dd~~~l~v~d~l~Nl-------------gPI~D~~v~d~~~~~~~q 185 (1225)
+|+..-.+| +|..|+..|.=.++.+..... .....+++...+.+. ++|.+++....+ ....
T Consensus 32 ~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~--~~~~ 109 (447)
T 3dw8_B 32 STVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK--NAAQ 109 (447)
T ss_dssp EEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC--SSSE
T ss_pred EEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC--Ccce
Confidence 555555554 677787777666666654321 011234556666665 788888875421 1134
Q ss_pred EEEEEecCCCccEEEEeecceeeEEE--------------------------------------EeeCCCcceEeEeeeC
Q psy7977 186 LVTCSGGFKEGSLRIIRNGIGIEEHA--------------------------------------CIDLPGIKGIWALSIG 227 (1225)
Q Consensus 186 Lva~sG~g~~GsLrilR~GI~~~~~~--------------------------------------s~eLpgv~~iWtl~~~ 227 (1225)
++++ +.+|.+++..-.-.-.... .+....-..++.+...
T Consensus 110 l~s~---s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 186 (447)
T 3dw8_B 110 FLLS---TNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISIN 186 (447)
T ss_dssp EEEE---ECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEEC
T ss_pred EEEe---CCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEc
Confidence 4444 3478888876432111100 0001122345555543
Q ss_pred CCCCCccEEEEEcCCceE-EEEEc-Cc-eeeee--ccCCcccccCeEEEEee-CC--CeEEEEc-cCcEEEEecCCcce-
Q psy7977 228 SPKNLDNTLVLSFVGHTR-VLTLS-GA-EVEET--EMGGFTSDQQTFYCGNV-DP--RTVLQVT-PSAAILISTESKAR- 297 (1225)
Q Consensus 228 ~~~~~d~yLVlSf~~~T~-Vl~i~-ge-~veEv--~~sgF~~~~~TL~ag~l-~~--~~iVQVT-~~~IRli~~~~~~~- 297 (1225)
. ...+|+.+ .+.+. ++.+. +. .+..+ ....+......+.+-.+ .+ ..++=.. ...|++++...++.
T Consensus 187 ~---~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~ 262 (447)
T 3dw8_B 187 S---DYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALC 262 (447)
T ss_dssp T---TSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSS
T ss_pred C---CCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccc
Confidence 3 34577766 45443 44432 11 11111 01112111222333222 12 2233222 34588888765433
Q ss_pred ---eeeecCCCC-----------CcEEEEEec--CCEEEEEECCeEEEEEeec-cc-eeEEe-eeccCc-----------
Q psy7977 298 ---VSSWEPPNG-----------KSISVVSCN--KNQVLCATGCDVYYLEVHG-SE-IKQLA-HRALEY----------- 347 (1225)
Q Consensus 298 ---i~eW~~p~g-----------~~Iv~As~n--~~~VlVasgg~Lv~feid~-~~-L~ev~-~~~l~~----------- 347 (1225)
+..+....+ ..|.+.+.+ +.+++.++.+.|.++++.. +. +.... +.....
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i 342 (447)
T 3dw8_B 263 DRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDYLSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCI 342 (447)
T ss_dssp CTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEESSEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGG
T ss_pred cceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeCCeEEEEeCCCCccccceeecccccccccccccccccc
Confidence 455554332 157777775 3455555558899988864 32 22221 111111
Q ss_pred -eeEEEEeccCCCCCCCCccccCcEEEEEEecCCeEEEEeCCCcceE
Q psy7977 348 -EVACLDISPLSNEETSSEPAKAQLAAVGLWTDISARLLSLPSLEEV 393 (1225)
Q Consensus 348 -eIScLai~~~~~~~~~~~~~~s~~laVG~w~d~tv~IlsL~~Le~v 393 (1225)
.+..+++.+ ...+++.|.. |++|+||++.+-+.+
T Consensus 343 ~~~~~~~~s~-----------~~~~l~s~s~-dg~v~iwd~~~~~~~ 377 (447)
T 3dw8_B 343 FDKFECCWNG-----------SDSVVMTGSY-NNFFRMFDRNTKRDI 377 (447)
T ss_dssp GCCCCEEECT-----------TSSEEEEECS-TTEEEEEETTTCCEE
T ss_pred ccceEEEECC-----------CCCEEEEecc-CCEEEEEEcCCCcce
Confidence 012245543 2467888887 999999999865443
No 114
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=92.77 E-value=7.1 Score=43.24 Aligned_cols=236 Identities=10% Similarity=0.003 Sum_probs=112.1
Q ss_pred ccceeeEEeeccccCCccEEEEEecCCCccEEEEeeccee-eEEEEeeCCC-cceEeEeeeCCCCCCccEEEEEcCCce-
Q psy7977 168 APIIDMVVVDLERQGQGQLVTCSGGFKEGSLRIIRNGIGI-EEHACIDLPG-IKGIWALSIGSPKNLDNTLVLSFVGHT- 244 (1225)
Q Consensus 168 gPI~D~~v~d~~~~~~~qLva~sG~g~~GsLrilR~GI~~-~~~~s~eLpg-v~~iWtl~~~~~~~~d~yLVlSf~~~T- 244 (1225)
+||..+++.. ..+++++++ .+|.+++..-.-+- +... .+.+ -..++.+....+ ..+|+....+.+
T Consensus 12 ~~v~~~~~s~-----~g~~l~~~~--~d~~i~iw~~~~~~~~~~~--~~~~h~~~v~~~~~s~~---~~~l~s~s~d~~v 79 (377)
T 3dwl_C 12 KPSYEHAFNS-----QRTEFVTTT--ATNQVELYEQDGNGWKHAR--TFSDHDKIVTCVDWAPK---SNRIVTCSQDRNA 79 (377)
T ss_dssp SCCSCCEECS-----SSSEEECCC--SSSCBCEEEEETTEEEECC--CBCCCSSCEEEEEECTT---TCCEEEEETTSSE
T ss_pred CcEEEEEECC-----CCCEEEEec--CCCEEEEEEccCCceEEEE--EEecCCceEEEEEEeCC---CCEEEEEeCCCeE
Confidence 5888887754 223444333 36777776543211 1111 2333 246777766532 356665554444
Q ss_pred EEEEEcCce-eeee-ccCCcccccCeEEEEee-CCC-eEEEEc-cCcEEEEecCCcc---eeeeecCCCCCcEEEEEec-
Q psy7977 245 RVLTLSGAE-VEET-EMGGFTSDQQTFYCGNV-DPR-TVLQVT-PSAAILISTESKA---RVSSWEPPNGKSISVVSCN- 315 (1225)
Q Consensus 245 ~Vl~i~ge~-veEv-~~sgF~~~~~TL~ag~l-~~~-~iVQVT-~~~IRli~~~~~~---~i~eW~~p~g~~Iv~As~n- 315 (1225)
+++.+.... .... ...+ ....+.+-.+ .++ .++=.. ...|++++.+..+ ....+..+....|.+.+.+
T Consensus 80 ~vwd~~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 156 (377)
T 3dwl_C 80 YVYEKRPDGTWKQTLVLLR---LNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHP 156 (377)
T ss_dssp EEC------CCCCEEECCC---CSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECT
T ss_pred EEEEcCCCCceeeeeEecc---cCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcC
Confidence 465553222 1111 1111 1112222222 111 222222 2346676665432 2444544345568877775
Q ss_pred -CCEEEEE-ECCeEEEEEeecccee---------------E-EeeeccCceeEEEEeccCCCCCCCCccccCcEEEEEEe
Q psy7977 316 -KNQVLCA-TGCDVYYLEVHGSEIK---------------Q-LAHRALEYEVACLDISPLSNEETSSEPAKAQLAAVGLW 377 (1225)
Q Consensus 316 -~~~VlVa-sgg~Lv~feid~~~L~---------------e-v~~~~l~~eIScLai~~~~~~~~~~~~~~s~~laVG~w 377 (1225)
+.+++.+ .++.+.++++...++. + +........|.|+++.+. ..+++.|..
T Consensus 157 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-----------~~~l~~~~~ 225 (377)
T 3dwl_C 157 NNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPS-----------GNALAYAGH 225 (377)
T ss_dssp TSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEECTT-----------SSCEEEEET
T ss_pred CCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcccCCceEEEEEECCC-----------CCEEEEEeC
Confidence 3455555 5788999988532111 1 111133466889988652 457888886
Q ss_pred cCCeEEEEeCCCcce--EEeecCCC-CCCcccEEEEeeCCeeEEEEEECCCcEEEEEEc
Q psy7977 378 TDISARLLSLPSLEE--VCKEPLGG-EIIPRSILMTCFEGHCYLLVALGDGSMFYFSLD 433 (1225)
Q Consensus 378 ~d~tv~IlsL~~Le~--v~~~~L~~-~~~P~SIll~~l~~~~~LlVGl~nG~L~~y~ld 433 (1225)
|++|+||++.+.+. .....+.. .....++.+.. ...+|..|. ++.++.|..+
T Consensus 226 -d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~-~~~~~~~~~~ 280 (377)
T 3dwl_C 226 -DSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWAN--ESAIVAAGY-NYSPILLQGN 280 (377)
T ss_dssp -TTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEE--TTEEEEEES-SSSEEEECCC
T ss_pred -CCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcC--CCCEEEEEc-CCcEEEEEeC
Confidence 99999999976433 11111111 11223444432 345676665 4555566554
No 115
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=92.36 E-value=16 Score=40.33 Aligned_cols=136 Identities=11% Similarity=0.117 Sum_probs=81.4
Q ss_pred cCcEEEEecCCcceeeeecCCCCCcEEEEEecC----CEEEEE-ECCeEEEEEeeccceeEEeeeccCceeEEEEeccCC
Q psy7977 284 PSAAILISTESKARVSSWEPPNGKSISVVSCNK----NQVLCA-TGCDVYYLEVHGSEIKQLAHRALEYEVACLDISPLS 358 (1225)
Q Consensus 284 ~~~IRli~~~~~~~i~eW~~p~g~~Iv~As~n~----~~VlVa-sgg~Lv~feid~~~L~ev~~~~l~~eIScLai~~~~ 358 (1225)
...+.+++...++.+.....+....|...+... .+++.+ .++.+.++++..++............+.|+++.+-
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pd- 181 (343)
T 3lrv_A 103 GNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKD- 181 (343)
T ss_dssp TTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTT-
T ss_pred cCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCC-
Confidence 344555565544445555444334577777643 455545 58899999987665433332334456889998752
Q ss_pred CCCCCCccccCcEEEEEEecCCeEEEEeCCCcceE-EeecCCCCCCcccEEEEeeCCeeEEEEEECCCcEEEEEEcC
Q psy7977 359 NEETSSEPAKAQLAAVGLWTDISARLLSLPSLEEV-CKEPLGGEIIPRSILMTCFEGHCYLLVALGDGSMFYFSLDP 434 (1225)
Q Consensus 359 ~~~~~~~~~~s~~laVG~w~d~tv~IlsL~~Le~v-~~~~L~~~~~P~SIll~~l~~~~~LlVGl~nG~L~~y~ld~ 434 (1225)
..+++.|.. |++|+||++.+.+.+ ..-.........++.+. +...+|..|. +|.+..|.+..
T Consensus 182 ----------g~~lasg~~-dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs--~~g~~l~s~~-~~~v~iwd~~~ 244 (343)
T 3lrv_A 182 ----------SLLLALYSP-DGILDVYNLSSPDQASSRFPVDEEAKIKEVKFA--DNGYWMVVEC-DQTVVCFDLRK 244 (343)
T ss_dssp ----------SCEEEEECT-TSCEEEEESSCTTSCCEECCCCTTSCEEEEEEC--TTSSEEEEEE-SSBEEEEETTS
T ss_pred ----------CCEEEEEcC-CCEEEEEECCCCCCCccEEeccCCCCEEEEEEe--CCCCEEEEEe-CCeEEEEEcCC
Confidence 468888887 999999999865543 22111001222334333 2456788887 66887777653
No 116
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=92.33 E-value=18 Score=41.08 Aligned_cols=212 Identities=13% Similarity=0.065 Sum_probs=112.4
Q ss_pred CCEEEEEECCeEEEEEeeccceeEEeee-ccCceeEEEEeccCCCCCCCCccccCcEEEEEEecCCeEEEEeCCCcceEE
Q psy7977 316 KNQVLCATGCDVYYLEVHGSEIKQLAHR-ALEYEVACLDISPLSNEETSSEPAKAQLAAVGLWTDISARLLSLPSLEEVC 394 (1225)
Q Consensus 316 ~~~VlVasgg~Lv~feid~~~L~ev~~~-~l~~eIScLai~~~~~~~~~~~~~~s~~laVG~w~d~tv~IlsL~~Le~v~ 394 (1225)
++.|+++.|++|.+.++..+++...-.. .-...|+|++..+- ..++++|.. |++|+||++.+.+.+.
T Consensus 116 ~n~lAvgld~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspd-----------g~~lasgs~-Dg~v~iWd~~~~~~~~ 183 (420)
T 4gga_A 116 GNVLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKE-----------GNYLAVGTS-SAEVQLWDVQQQKRLR 183 (420)
T ss_dssp TSEEEEEETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTT-----------SSEEEEEET-TSCEEEEETTTTEEEE
T ss_pred CCEEEEEeCCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCC-----------CCEEEEEEC-CCeEEEEEcCCCcEEE
Confidence 4455556778888888776655443222 23457999999752 568999997 9999999998766554
Q ss_pred eecCCCCCCcccEEEEeeCCeeEEEEEECCCcEEEEEEcCCCCccccceeeee-c-CccceEEEEeeCCceEEEEecCCc
Q psy7977 395 KEPLGGEIIPRSILMTCFEGHCYLLVALGDGSMFYFSLDPASGRLTDKKKVTL-G-TQPTVLKTFRSLSTTNVFACSDRP 472 (1225)
Q Consensus 395 ~~~L~~~~~P~SIll~~l~~~~~LlVGl~nG~L~~y~ld~~sg~Ls~~k~~~L-G-~~pV~L~~~~~~g~~~Vfa~sdrP 472 (1225)
...-. .. +-.++. . ...+|..|..+|.+..+....... ....+ | ..++....+...|..-+....+..
T Consensus 184 ~~~~h-~~--~v~~~s-~-~~~~l~sgs~d~~i~~~d~~~~~~-----~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~ 253 (420)
T 4gga_A 184 NMTSH-SA--RVGSLS-W-NSYILSSGSRSGHIHHHDVRVAEH-----HVATLSGHSQEVCGLRWAPDGRHLASGGNDNL 253 (420)
T ss_dssp EECCC-SS--CEEEEE-E-ETTEEEEEETTSEEEEEETTSSSC-----EEEEEECCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred EEeCC-CC--ceEEEe-e-CCCEEEEEeCCCceeEeeecccce-----eeEEecccccceeeeeecCCCCeeeeeecccc
Confidence 32111 11 112222 2 235788999999998876543211 11111 1 122222222222222222222333
Q ss_pred EEEEEc-CCe-----eEEeecccccccccccCCCCCCCCeEEEEe---CCeEEEEEEcCCCCeeeEEEeCCCcccEEEEe
Q psy7977 473 TVIYSS-NHK-----LVFSNVNLRQVNHMCSLNAESYPDSLALAT---DSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQ 543 (1225)
Q Consensus 473 ~liyss-~g~-----l~~~pl~~~~v~~~s~F~se~~p~glv~vs---~~~LrI~~i~~~~~l~ir~IpLg~TprrIay~ 543 (1225)
..++.. .++ +....-....+..+ .|+. .-+..++.+. ++.++|-.+.. .-....+..+..+..++++
T Consensus 254 v~i~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~p-~~~~~la~~~gs~D~~I~iwd~~t--~~~~~~~~~~~~v~~~~~~ 329 (420)
T 4gga_A 254 VNVWPSAPGEGGWVPLQTFTQHQGAVKAV-AWCP-WQSNVLATGGGTSDRHIRIWNVCS--GACLSAVDAHSQVCSILWS 329 (420)
T ss_dssp EEEEESSCCSSCSCCSEEECCCSSCEEEE-EECT-TCTTEEEEEECTTTCEEEEEETTT--TEEEEEEECSSCEEEEEEE
T ss_pred ceEEeeccccccceeeeeecccCCceeee-eeCC-CcccEEEEEeecCCCEEEEEeCCc--cccceeeccccceeeeeec
Confidence 333321 111 11111111112111 1111 1122333333 35788876543 3456677888899999999
Q ss_pred cCCCEEEEEE
Q psy7977 544 ESSQTFGVIT 553 (1225)
Q Consensus 544 p~s~~~vV~t 553 (1225)
|..+.++++.
T Consensus 330 ~~~~~lv~~s 339 (420)
T 4gga_A 330 PHYKELISGH 339 (420)
T ss_dssp TTTTEEEEEE
T ss_pred CCCCeEEEEE
Confidence 9999888775
No 117
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=92.04 E-value=16 Score=39.84 Aligned_cols=116 Identities=13% Similarity=0.070 Sum_probs=71.1
Q ss_pred CcEEEEEec--CCEEEEE-ECCeEEEEEeeccceeEEee-eccCceeEEEEeccCCCCCCCCccccCcEEEEEEecCCeE
Q psy7977 307 KSISVVSCN--KNQVLCA-TGCDVYYLEVHGSEIKQLAH-RALEYEVACLDISPLSNEETSSEPAKAQLAAVGLWTDISA 382 (1225)
Q Consensus 307 ~~Iv~As~n--~~~VlVa-sgg~Lv~feid~~~L~ev~~-~~l~~eIScLai~~~~~~~~~~~~~~s~~laVG~w~d~tv 382 (1225)
..|.+.+++ +.+++.+ .++.+.++++..+....+.. ..-...|.|++..+- ...++++.|.+ |++|
T Consensus 14 ~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~---------~~~~~l~s~s~-D~~v 83 (316)
T 3bg1_A 14 DMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHP---------MYGNILASCSY-DRKV 83 (316)
T ss_dssp CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCG---------GGSSCEEEEET-TSCE
T ss_pred CeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCC---------CCCCEEEEEEC-CCEE
Confidence 356666654 4455555 57889888887543222211 223568999988541 12457888887 9999
Q ss_pred EEEeCCCc--ceEEeecCCC-CCCcccEEEEeeCCeeEEEEEECCCcEEEEEEcC
Q psy7977 383 RLLSLPSL--EEVCKEPLGG-EIIPRSILMTCFEGHCYLLVALGDGSMFYFSLDP 434 (1225)
Q Consensus 383 ~IlsL~~L--e~v~~~~L~~-~~~P~SIll~~l~~~~~LlVGl~nG~L~~y~ld~ 434 (1225)
+||++.+- +.+.. +.+ .....++.+..-+...+|..|..||.+..+.+..
T Consensus 84 ~iWd~~~~~~~~~~~--~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~ 136 (316)
T 3bg1_A 84 IIWREENGTWEKSHE--HAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTG 136 (316)
T ss_dssp EEECCSSSCCCEEEE--ECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECS
T ss_pred EEEECCCCcceEEEE--ccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCC
Confidence 99999753 23222 111 1223455554322256799999999999998764
No 118
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=92.01 E-value=3 Score=47.18 Aligned_cols=178 Identities=12% Similarity=0.209 Sum_probs=108.2
Q ss_pred EEEEEEECCCCcEEEEEECC--CCCceEEEEEEEecCCCCeEEEEEeeeeCCCCCCCcceEEEEEEEeC-C-cEEEEEEE
Q psy7977 1005 HNLLIIDQNTFEILHAHQLF--PGEYALSLISSKFGEDPNTYFVLGTAVVHPEENEPKQGRIIIFHYDD-G-KLQQIAEK 1080 (1225)
Q Consensus 1005 s~irlvdp~t~~~i~~~eL~--~nE~~~si~~v~~~~~~~~~lvVGTa~~~~eed~~~~GrI~vf~i~~-~-kL~lv~~~ 1080 (1225)
+.|++.|..+.+.+..+..+ ... ...+..+.+......+++.|.. -|.|.+|++.. + .++.+ .
T Consensus 180 ~~i~~wd~~~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~~l~sgs~----------D~~v~~wd~~~~~~~~~~~--~ 246 (380)
T 3iz6_a 180 QTCVLWDVTTGQRISIFGSEFPSGH-TADVLSLSINSLNANMFISGSC----------DTTVRLWDLRITSRAVRTY--H 246 (380)
T ss_dssp SCEEEECTTTCCEEEEECCCSSSSC-CSCEEEEEECSSSCCEEEEEET----------TSCEEEEETTTTCCCCEEE--C
T ss_pred CcEEEEEcCCCcEEEEeecccCCCC-ccCeEEEEeecCCCCEEEEEEC----------CCeEEEEECCCCCcceEEE--C
Confidence 57999999998888776332 221 1123334454434567777752 46788998853 2 22222 2
Q ss_pred EecCceeeeccc-cCeEEEEeC--CEEEEEEcCCCceeee-ee--c----ccceeEEEEEEEECCEEEEeeccccEEEEE
Q psy7977 1081 EIKGACYSMCEF-NGKLLASIN--STVRLFEWTNEKELRL-EC--S----HFNNIIALFLKVKGDFILVGDLMRSLTLLQ 1150 (1225)
Q Consensus 1081 ev~G~v~al~~f-~G~LLa~vg--~~l~vy~l~~~~~L~~-e~--~----~~~~~i~~~l~~~g~~IlvGD~~kSv~~l~ 1150 (1225)
.-++.|++++-. +|+.|++.+ .+|++|++...+.+.. .. . ..+....+.....|.++++|..-..+.+
T Consensus 247 ~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~v-- 324 (380)
T 3iz6_a 247 GHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYV-- 324 (380)
T ss_dssp CCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEE--
T ss_pred CcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEE--
Confidence 236788887743 576666544 6999999987665541 11 0 0011112333346789999987777766
Q ss_pred EecCCCeE-EEEec--cCCCceeEEEEeeeCC-cEEEEcCCCcEEEEEeCC
Q psy7977 1151 YKTMEGSF-EEISR--DYNPNWMTSIEILDDE-LFLGAENSYNLFICQKDS 1197 (1225)
Q Consensus 1151 y~~~~~~L-~~~ar--D~~~~wvta~~~Ld~d-t~l~aD~~gNl~vl~~~~ 1197 (1225)
|+....+. ..+.. ..+..+|+++.+-.++ .++.+..++++.+..+..
T Consensus 325 wd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~ 375 (380)
T 3iz6_a 325 WDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSG 375 (380)
T ss_dssp EETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCS
T ss_pred EECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCC
Confidence 45443333 33322 3456678888887655 688899999999988753
No 119
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=91.84 E-value=21 Score=40.68 Aligned_cols=132 Identities=9% Similarity=0.034 Sum_probs=79.2
Q ss_pred CcEEEEecCCcceeeeecCCCCCcEEEEEec--CCEEEEE-ECCeEEEEEeeccceeEEeeeccCceeEEEEeccCCCCC
Q psy7977 285 SAAILISTESKARVSSWEPPNGKSISVVSCN--KNQVLCA-TGCDVYYLEVHGSEIKQLAHRALEYEVACLDISPLSNEE 361 (1225)
Q Consensus 285 ~~IRli~~~~~~~i~eW~~p~g~~Iv~As~n--~~~VlVa-sgg~Lv~feid~~~L~ev~~~~l~~eIScLai~~~~~~~ 361 (1225)
..|++.+...++....+... ...|.+.+.. +.+++.+ .++.|.++++...+.... -..-...|+|+++.+.
T Consensus 130 g~i~vwd~~~~~~~~~l~~h-~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~-~~~h~~~V~~v~~~p~---- 203 (410)
T 1vyh_C 130 ATIKVWDYETGDFERTLKGH-TDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRT-MHGHDHNVSSVSIMPN---- 203 (410)
T ss_dssp SCEEEEETTTCCCCEEECCC-SSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEEC-CCCCSSCEEEEEECSS----
T ss_pred CeEEEEECCCCcEEEEEecc-CCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEE-EcCCCCCEEEEEEeCC----
Confidence 34666666554444444432 2357766664 3445445 578888887764432211 1123467899998652
Q ss_pred CCCccccCcEEEEEEecCCeEEEEeCCCcceEEeecCCCCCCcccEEEEee-CCeeEEEEEECCCcEEEEEEcC
Q psy7977 362 TSSEPAKAQLAAVGLWTDISARLLSLPSLEEVCKEPLGGEIIPRSILMTCF-EGHCYLLVALGDGSMFYFSLDP 434 (1225)
Q Consensus 362 ~~~~~~~s~~laVG~w~d~tv~IlsL~~Le~v~~~~L~~~~~P~SIll~~l-~~~~~LlVGl~nG~L~~y~ld~ 434 (1225)
.++++.|.+ |++|++|++.+-..+..-.- ....+..+.+ ....+|..|..||.+..|.+..
T Consensus 204 -------~~~l~s~s~-D~~i~~wd~~~~~~~~~~~~----h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~ 265 (410)
T 1vyh_C 204 -------GDHIVSASR-DKTIKMWEVQTGYCVKTFTG----HREWVRMVRPNQDGTLIASCSNDQTVRVWVVAT 265 (410)
T ss_dssp -------SSEEEEEET-TSEEEEEETTTCCEEEEEEC----CSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred -------CCEEEEEeC-CCeEEEEECCCCcEEEEEeC----CCccEEEEEECCCCCEEEEEcCCCeEEEEECCC
Confidence 457888887 99999999976544332111 1112222233 3456889999999999987653
No 120
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=91.83 E-value=9.5 Score=43.10 Aligned_cols=38 Identities=8% Similarity=0.128 Sum_probs=29.7
Q ss_pred EEEEEEcCCCCeeeEEEeCCCcccEEEEecCCCEEEEEE
Q psy7977 515 FTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVIT 553 (1225)
Q Consensus 515 LrI~~i~~~~~l~ir~IpLg~TprrIay~p~s~~~vV~t 553 (1225)
-.+.-+|....-.+++++++. |+.|+++|..+.++++.
T Consensus 286 ~~v~viD~~t~~~v~~i~~~~-p~~ia~spdg~~l~v~n 323 (361)
T 2oiz_A 286 AEIWVMDTKTKQRVARIPGRD-ALSMTIDQQRNLMLTLD 323 (361)
T ss_dssp SEEEEEETTTTEEEEEEECTT-CCEEEEETTTTEEEEEC
T ss_pred ceEEEEECCCCcEEEEEecCC-eeEEEECCCCCEEEEeC
Confidence 356666665666788999999 99999999999666543
No 121
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=91.58 E-value=29 Score=41.73 Aligned_cols=256 Identities=12% Similarity=0.103 Sum_probs=131.1
Q ss_pred cccccCeEEEEeeCCCeEEEEccCcEEEEec--CCcceeeeecCCCCCcEEEEEe------cCCEEEEE--ECCeEEEEE
Q psy7977 262 FTSDQQTFYCGNVDPRTVLQVTPSAAILIST--ESKARVSSWEPPNGKSISVVSC------NKNQVLCA--TGCDVYYLE 331 (1225)
Q Consensus 262 F~~~~~TL~ag~l~~~~iVQVT~~~IRli~~--~~~~~i~eW~~p~g~~Iv~As~------n~~~VlVa--sgg~Lv~fe 331 (1225)
|..++.+|+++... ..|++++. .+++.+..+.. +....+.++ .+.+++++ .++++.+++
T Consensus 186 ~spdg~~l~v~~~d---------~~V~v~D~~~~t~~~~~~i~~--g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D 254 (543)
T 1nir_A 186 MSASGRYLLVIGRD---------ARIDMIDLWAKEPTKVAEIKI--GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMD 254 (543)
T ss_dssp ECTTSCEEEEEETT---------SEEEEEETTSSSCEEEEEEEC--CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEE
T ss_pred ECCCCCEEEEECCC---------CeEEEEECcCCCCcEEEEEec--CCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEe
Confidence 44566666666542 45777777 44555566553 333444444 35677776 378888886
Q ss_pred eeccceeEEeeecc------------CceeEEEEeccCCCCCCCCccccCcEEEEEEecCCeEEEEeCCCcceEEeecCC
Q psy7977 332 VHGSEIKQLAHRAL------------EYEVACLDISPLSNEETSSEPAKAQLAAVGLWTDISARLLSLPSLEEVCKEPLG 399 (1225)
Q Consensus 332 id~~~L~ev~~~~l------------~~eIScLai~~~~~~~~~~~~~~s~~laVG~w~d~tv~IlsL~~Le~v~~~~L~ 399 (1225)
....+ .+..... +..+.++.+++. ...+++....+++|.++++.+.+.+....++
T Consensus 255 ~~t~~--~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~-----------~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~ 321 (543)
T 1nir_A 255 GETLE--PKQIVSTRGMTVDTQTYHPEPRVAAIIASHE-----------HPEFIVNVKETGKVLLVNYKDIDNLTVTSIG 321 (543)
T ss_dssp TTTCC--EEEEEECCEECSSSCCEESCCCEEEEEECSS-----------SSEEEEEETTTTEEEEEECTTSSSCEEEEEE
T ss_pred ccccc--cceeecccCcccCccccccCCceEEEEECCC-----------CCEEEEEECCCCeEEEEEecCCCcceeEEec
Confidence 54332 2222211 124667776542 3355666666999999999764432211122
Q ss_pred CCCCcccEEEEeeCCeeEEEEEE-CCCcEEEEEEcCCCCccccceeeeecCccc--eEEEEeeCCceEEEEec---CCcE
Q psy7977 400 GEIIPRSILMTCFEGHCYLLVAL-GDGSMFYFSLDPASGRLTDKKKVTLGTQPT--VLKTFRSLSTTNVFACS---DRPT 473 (1225)
Q Consensus 400 ~~~~P~SIll~~l~~~~~LlVGl-~nG~L~~y~ld~~sg~Ls~~k~~~LG~~pV--~L~~~~~~g~~~Vfa~s---drP~ 473 (1225)
....|+++.+.. ...||+++. .++.+.. +|..++++.. ....|..|- +-..+.......+++++ +...
T Consensus 322 ~~~~~~~~~~sp--dg~~l~va~~~~~~v~v--~D~~tg~l~~--~i~~g~~ph~g~g~~~~~p~~g~~~~s~~~~d~~V 395 (543)
T 1nir_A 322 AAPFLHDGGWDS--SHRYFMTAANNSNKVAV--IDSKDRRLSA--LVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSI 395 (543)
T ss_dssp CCSSCCCEEECT--TSCEEEEEEGGGTEEEE--EETTTTEEEE--EEECSSSBCCTTCEEEEETTTEEEEEEEBSSSSEE
T ss_pred cCcCccCceECC--CCCEEEEEecCCCeEEE--EECCCCeEEE--eeccCCCCCCCCCcccCCCCCccEEEeccCCCceE
Confidence 134577776543 345666654 4677766 4555565432 222343331 11111111212345543 2222
Q ss_pred EEEE-cC-------Ce-eEEeecccccccccccCCCCCCCC-eEEEEe---------CCeEEEEEEcCCCCeeeEEEeC-
Q psy7977 474 VIYS-SN-------HK-LVFSNVNLRQVNHMCSLNAESYPD-SLALAT---------DSTFTFGTIDEIQKLHIRTVPL- 533 (1225)
Q Consensus 474 liys-s~-------g~-l~~~pl~~~~v~~~s~F~se~~p~-glv~vs---------~~~LrI~~i~~~~~l~ir~IpL- 533 (1225)
-++. .. .+ ++..+...... .+..| .|+ ..++++ ++++.+..+.+.... .+.+|+
T Consensus 396 ~v~d~~~~~~~~~~~~~v~~l~~~g~~~-~~v~~----~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~-~~~~~v~ 469 (543)
T 1nir_A 396 SLIGTDPKNHPQYAWKKVAELQGQGGGS-LFIKT----HPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAK-YQVLPIA 469 (543)
T ss_dssp EEEECCTTTCTTTBTSEEEEEECSCSCC-CCEEC----CTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSC-CEEECHH
T ss_pred EEEEeCCCCCchhcCeEEEEEEcCCCCc-eEEEc----CCCCCcEEEecCCCCCcccCceEEEEECCCCCCC-eEEeech
Confidence 2222 11 11 11222111111 11112 233 355554 247888887765532 356766
Q ss_pred --------CCcccEEEEecCCCEEEEEE
Q psy7977 534 --------GEAPRRIAYQESSQTFGVIT 553 (1225)
Q Consensus 534 --------g~TprrIay~p~s~~~vV~t 553 (1225)
+..+..++|+|..+.+.++.
T Consensus 470 ~~~~~~~~~~~~~~~~~~~~g~~~~~s~ 497 (543)
T 1nir_A 470 EWADLGEGAKRVVQPEYNKRGDEVWFSV 497 (543)
T ss_dssp HHHCCCSSCCEEEEEEECSSSSEEEEEE
T ss_pred hhcccCCCCCceEeccCCCCCCEEEEEe
Confidence 35788999999999888876
No 122
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=91.55 E-value=4.1 Score=45.20 Aligned_cols=103 Identities=14% Similarity=0.107 Sum_probs=58.6
Q ss_pred CCEEEEE-ECCeEEEEEeeccceeEEeee-ccCceeEEEEeccCCCCCCCCccccCcEEEEEEecCCeEEEEeCCCcc--
Q psy7977 316 KNQVLCA-TGCDVYYLEVHGSEIKQLAHR-ALEYEVACLDISPLSNEETSSEPAKAQLAAVGLWTDISARLLSLPSLE-- 391 (1225)
Q Consensus 316 ~~~VlVa-sgg~Lv~feid~~~L~ev~~~-~l~~eIScLai~~~~~~~~~~~~~~s~~laVG~w~d~tv~IlsL~~Le-- 391 (1225)
+.+++.+ .++.|.+++++.+........ .-...|.|+++.+. .++++.|.. |++|+||++.+-+
T Consensus 23 g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~-----------~~~l~s~s~-d~~v~vwd~~~~~~~ 90 (377)
T 3dwl_C 23 RTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPK-----------SNRIVTCSQ-DRNAYVYEKRPDGTW 90 (377)
T ss_dssp SSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTT-----------TCCEEEEET-TSSEEEC------CC
T ss_pred CCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCC-----------CCEEEEEeC-CCeEEEEEcCCCCce
Confidence 3445545 578888888875432332222 23567899998752 457888887 9999999997543
Q ss_pred -eEEeecCCCCCCcccEEEEee-CCeeEEEEEECCCcEEEEEEcC
Q psy7977 392 -EVCKEPLGGEIIPRSILMTCF-EGHCYLLVALGDGSMFYFSLDP 434 (1225)
Q Consensus 392 -~v~~~~L~~~~~P~SIll~~l-~~~~~LlVGl~nG~L~~y~ld~ 434 (1225)
.... +. .....+.-+.+ ....+|+.|..||.+..|.++.
T Consensus 91 ~~~~~--~~--~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 131 (377)
T 3dwl_C 91 KQTLV--LL--RLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQ 131 (377)
T ss_dssp CCEEE--CC--CCSSCEEEEECCTTSSCCEEEESSSCEEECCC--
T ss_pred eeeeE--ec--ccCCceEEEEECCCCCEEEEEecCCeEEEEEECC
Confidence 2221 11 11122322223 2456889999999998887654
No 123
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=91.38 E-value=5.1 Score=46.12 Aligned_cols=115 Identities=10% Similarity=0.091 Sum_probs=69.4
Q ss_pred CCcEEEEEec--CC-EEEEE-ECCeEEEEEeeccceeEE-eeeccCceeEEEEeccCCCCCCCCccccCcEEEEEEecCC
Q psy7977 306 GKSISVVSCN--KN-QVLCA-TGCDVYYLEVHGSEIKQL-AHRALEYEVACLDISPLSNEETSSEPAKAQLAAVGLWTDI 380 (1225)
Q Consensus 306 g~~Iv~As~n--~~-~VlVa-sgg~Lv~feid~~~L~ev-~~~~l~~eIScLai~~~~~~~~~~~~~~s~~laVG~w~d~ 380 (1225)
+.+|++.+.+ ++ .|+.. .+|.|.+.+++..+.... ....-...|+||++.|. ...+++.|.. |+
T Consensus 119 ~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~----------~~~~l~s~s~-D~ 187 (435)
T 4e54_B 119 DRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPL----------NTNQFYASSM-EG 187 (435)
T ss_dssp SSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSS----------CTTEEEEECS-SS
T ss_pred CCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCC----------CCCEEEEEeC-CC
Confidence 3467777775 33 34444 578898887765432222 11223567999998763 2457887877 99
Q ss_pred eEEEEeCCCcceEEeecCCC-CCCcccEEEEeeCCeeEEEEEECCCcEEEEEEc
Q psy7977 381 SARLLSLPSLEEVCKEPLGG-EIIPRSILMTCFEGHCYLLVALGDGSMFYFSLD 433 (1225)
Q Consensus 381 tv~IlsL~~Le~v~~~~L~~-~~~P~SIll~~l~~~~~LlVGl~nG~L~~y~ld 433 (1225)
+|+||++..-.......... .....++.+. ....+|..|..||.+..+.++
T Consensus 188 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~g~~dg~i~~wd~~ 239 (435)
T 4e54_B 188 TTRLQDFKGNILRVFASSDTINIWFCSLDVS--ASSRMVVTGDNVGNVILLNMD 239 (435)
T ss_dssp CEEEEETTSCEEEEEECCSSCSCCCCCEEEE--TTTTEEEEECSSSBEEEEESS
T ss_pred EEEEeeccCCceeEEeccCCCCccEEEEEEC--CCCCEEEEEeCCCcEeeeccC
Confidence 99999996422111111100 1112334333 345689999999999998865
No 124
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=91.27 E-value=19 Score=38.97 Aligned_cols=174 Identities=10% Similarity=0.078 Sum_probs=95.9
Q ss_pred EEEEEEECCCCcEEEEEECCCCCceEEEEEEEecCCCCeEEEEEeeeeCCCCCCCcceEEEEEEEeCCcEEEEEEEEecC
Q psy7977 1005 HNLLIIDQNTFEILHAHQLFPGEYALSLISSKFGEDPNTYFVLGTAVVHPEENEPKQGRIIIFHYDDGKLQQIAEKEIKG 1084 (1225)
Q Consensus 1005 s~irlvdp~t~~~i~~~eL~~nE~~~si~~v~~~~~~~~~lvVGTa~~~~eed~~~~GrI~vf~i~~~kL~lv~~~ev~G 1084 (1225)
..|+++|..+.+.+..+.+. .+.+ + +.|..+++.+++.+. ..++|++|+...+++.......-.+
T Consensus 20 ~~v~~~d~~~~~~~~~~~~~-~~~~-~---~~~s~dg~~l~~~~~----------~~~~i~~~d~~~~~~~~~~~~~~~~ 84 (331)
T 3u4y_A 20 RRISFFSTDTLEILNQITLG-YDFV-D---TAITSDCSNVVVTSD----------FCQTLVQIETQLEPPKVVAIQEGQS 84 (331)
T ss_dssp TEEEEEETTTCCEEEEEECC-CCEE-E---EEECSSSCEEEEEES----------TTCEEEEEECSSSSCEEEEEEECSS
T ss_pred CeEEEEeCcccceeeeEEcc-CCcc-e---EEEcCCCCEEEEEeC----------CCCeEEEEECCCCceeEEecccCCC
Confidence 58999999999999888865 3333 3 446555544444332 1358999988776652222222234
Q ss_pred ceeeecc-ccCe-EEEEeCC----EEEEEEcCCCceee-eeecccceeEEEEEEEECCEEEEeecc-cc-EEEEEEecCC
Q psy7977 1085 ACYSMCE-FNGK-LLASINS----TVRLFEWTNEKELR-LECSHFNNIIALFLKVKGDFILVGDLM-RS-LTLLQYKTME 1155 (1225)
Q Consensus 1085 ~v~al~~-f~G~-LLa~vg~----~l~vy~l~~~~~L~-~e~~~~~~~i~~~l~~~g~~IlvGD~~-kS-v~~l~y~~~~ 1155 (1225)
+..+++- -+|+ |+++-+. +|++|++...+.++ ......++ .+.+...|+++++++.. .. +.++.++..
T Consensus 85 ~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~--~~~~spdg~~l~~~~~~~~~~i~~~~~~~~- 161 (331)
T 3u4y_A 85 SMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPYDAV--GIAISPNGNGLILIDRSSANTVRRFKIDAD- 161 (331)
T ss_dssp CCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCTTEE--EEEECTTSSCEEEEEETTTTEEEEEEECTT-
T ss_pred CccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECCCCcc--ceEECCCCCEEEEEecCCCceEEEEEECCC-
Confidence 4442331 2565 5544445 89999998766554 22222222 22333346678888876 55 777666542
Q ss_pred CeEEEEecc--CCCceeEEEEeeeCCc-EEEEc-CCCcEEEEEeC
Q psy7977 1156 GSFEEISRD--YNPNWMTSIEILDDEL-FLGAE-NSYNLFICQKD 1196 (1225)
Q Consensus 1156 ~~L~~~arD--~~~~wvta~~~Ld~dt-~l~aD-~~gNl~vl~~~ 1196 (1225)
..+...... .......++.+-.++. +++++ ..+.+.++...
T Consensus 162 g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~ 206 (331)
T 3u4y_A 162 GVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQ 206 (331)
T ss_dssp CCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred CcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECC
Confidence 223221100 1122345555544553 44444 56778888765
No 125
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=90.87 E-value=21 Score=38.95 Aligned_cols=267 Identities=10% Similarity=0.070 Sum_probs=127.5
Q ss_pred CeEEEEEcCCCEEEEEEEeCcccCCceeeeecEEEEe-cccCcceeEEEecCC-eEEEEeecCCeEEEEEeeCCCCCCCc
Q psy7977 80 ERYLLGDLAGRLFMLLLEKEEKMDGTFSVKEPKVELL-GEISIPECLTYLDNG-VVFVGSRLGDSQLVKLNRSPDENGTY 157 (1225)
Q Consensus 80 ~~~LL~~e~G~Ly~l~l~~d~~~~Gr~~Vs~i~i~~~-~tis~~SsL~~L~~g-~LFvGS~~GDS~L~~i~~~~ddd~~~ 157 (1225)
..++-+..+|.+..-.+..+.. -.+..+..+ +......++..-.+| +|+.||..| .+.-|....
T Consensus 31 ~~l~s~s~D~~v~~W~~~~~~~------~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~--~v~~wd~~~------ 96 (319)
T 3frx_A 31 NLLLSASRDKTLISWKLTGDDQ------KFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDK--TLRLWDVAT------ 96 (319)
T ss_dssp TEEEEEETTSEEEEEEEEEETT------EEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTS--EEEEEETTT------
T ss_pred cEEEEecCCccEEEecCCCCCc------cccccceEEeCCcccEEEEEECCCCCEEEEEeCCC--EEEEEECCC------
Confidence 3466677888887776654311 111222222 223334556555554 566666544 444443321
Q ss_pred eEEEeeeec-cccceeeEEeeccccCCccEEEEEecCCCccEEEEeecceeeEEEEeeCCCcceEeEeeeCCCCC---Cc
Q psy7977 158 VSVMESFTN-LAPIIDMVVVDLERQGQGQLVTCSGGFKEGSLRIIRNGIGIEEHACIDLPGIKGIWALSIGSPKN---LD 233 (1225)
Q Consensus 158 l~v~d~l~N-lgPI~D~~v~d~~~~~~~qLva~sG~g~~GsLrilR~GI~~~~~~s~eLpgv~~iWtl~~~~~~~---~d 233 (1225)
-+.+.++.. -++|.++.+.. ..+++++++ .+|.+++..-. -..+..+. ..-..++.+....... ..
T Consensus 97 ~~~~~~~~~h~~~v~~~~~~~-----~~~~l~s~s--~D~~i~vwd~~--~~~~~~~~-~h~~~v~~~~~~~~~~~~~~~ 166 (319)
T 3frx_A 97 GETYQRFVGHKSDVMSVDIDK-----KASMIISGS--RDKTIKVWTIK--GQCLATLL-GHNDWVSQVRVVPNEKADDDS 166 (319)
T ss_dssp TEEEEEEECCSSCEEEEEECT-----TSCEEEEEE--TTSCEEEEETT--SCEEEEEC-CCSSCEEEEEECCC------C
T ss_pred CCeeEEEccCCCcEEEEEEcC-----CCCEEEEEe--CCCeEEEEECC--CCeEEEEe-ccCCcEEEEEEccCCCCCCCc
Confidence 134445543 46787777643 233333332 46778887532 12222221 1112344444332111 12
Q ss_pred cEEEEEcCCce-EEEEEcCceeeeeccCCcccccCeEEEEee-CCC-eEEEEc-cCcEEEEecCCcceeeeecCCCCCcE
Q psy7977 234 NTLVLSFVGHT-RVLTLSGAEVEETEMGGFTSDQQTFYCGNV-DPR-TVLQVT-PSAAILISTESKARVSSWEPPNGKSI 309 (1225)
Q Consensus 234 ~yLVlSf~~~T-~Vl~i~ge~veEv~~sgF~~~~~TL~ag~l-~~~-~iVQVT-~~~IRli~~~~~~~i~eW~~p~g~~I 309 (1225)
.+++..-.+.+ +++.+....... ...+ ....+.+-.+ .++ .++=.. ...|++.+...++.+.....+ ..|
T Consensus 167 ~~l~s~~~d~~i~~wd~~~~~~~~-~~~~---h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~v 240 (319)
T 3frx_A 167 VTIISAGNDKMVKAWNLNQFQIEA-DFIG---HNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ--DEV 240 (319)
T ss_dssp CEEEEEETTSCEEEEETTTTEEEE-EECC---CCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECC--SCE
T ss_pred cEEEEEeCCCEEEEEECCcchhhe-eecC---CCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCC--CcE
Confidence 24444434433 344432111111 1111 1111222222 222 232222 245788887765555555543 346
Q ss_pred EEEEec--CCEEEEEECCeEEEEEeeccceeEEeeec-------cCceeEEEEeccCCCCCCCCccccCcEEEEEEecCC
Q psy7977 310 SVVSCN--KNQVLCATGCDVYYLEVHGSEIKQLAHRA-------LEYEVACLDISPLSNEETSSEPAKAQLAAVGLWTDI 380 (1225)
Q Consensus 310 v~As~n--~~~VlVasgg~Lv~feid~~~L~ev~~~~-------l~~eIScLai~~~~~~~~~~~~~~s~~laVG~w~d~ 380 (1225)
.+.+.. +.+++.+.++.+.++.++...+...-+.. ....+.+++.++- .++++.|.. |+
T Consensus 241 ~~~~~sp~~~~la~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spd-----------g~~l~sg~~-Dg 308 (319)
T 3frx_A 241 FSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSAD-----------GQTLFAGYT-DN 308 (319)
T ss_dssp EEEEECSSSSEEEEEETTEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTT-----------SSEEEEEET-TS
T ss_pred EEEEEcCCCCEEEEEcCCCcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCC-----------CCEEEEeec-Cc
Confidence 666665 33444447777888887754332211111 2345678887652 568888887 99
Q ss_pred eEEEEeCC
Q psy7977 381 SARLLSLP 388 (1225)
Q Consensus 381 tv~IlsL~ 388 (1225)
+|+||++.
T Consensus 309 ~i~vWd~~ 316 (319)
T 3frx_A 309 VIRVWQVM 316 (319)
T ss_dssp CEEEEEEE
T ss_pred eEEEEEEe
Confidence 99999874
No 126
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=90.77 E-value=23 Score=39.09 Aligned_cols=218 Identities=16% Similarity=0.186 Sum_probs=111.8
Q ss_pred cCCEEEEEEC-----CeEEEEEeec--cceeEEeeec-cCceeEEEEeccCCCCCCCCccccCcEEEEEEecCCeEEEEe
Q psy7977 315 NKNQVLCATG-----CDVYYLEVHG--SEIKQLAHRA-LEYEVACLDISPLSNEETSSEPAKAQLAAVGLWTDISARLLS 386 (1225)
Q Consensus 315 n~~~VlVasg-----g~Lv~feid~--~~L~ev~~~~-l~~eIScLai~~~~~~~~~~~~~~s~~laVG~w~d~tv~Ils 386 (1225)
.+.++++++. +.+..+.++. +.+..+.... ....+.++++ + .++++++.+.++++.+|.
T Consensus 60 dg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~----d---------g~~l~~~~~~~~~v~~~~ 126 (361)
T 3scy_A 60 DGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT----N---------GKNIVTANYSGGSITVFP 126 (361)
T ss_dssp TSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE----C---------SSEEEEEETTTTEEEEEE
T ss_pred CCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE----C---------CCEEEEEECCCCEEEEEE
Confidence 3455666532 6888888876 4565555433 3345666665 2 346778877799999999
Q ss_pred CCC---cceEEe-ecCCC-C--------CCcccEEEEeeCCeeEE-EEEECCCcEEEEEEcCCCC----c-cccc---ee
Q psy7977 387 LPS---LEEVCK-EPLGG-E--------IIPRSILMTCFEGHCYL-LVALGDGSMFYFSLDPASG----R-LTDK---KK 444 (1225)
Q Consensus 387 L~~---Le~v~~-~~L~~-~--------~~P~SIll~~l~~~~~L-lVGl~nG~L~~y~ld~~sg----~-Ls~~---k~ 444 (1225)
+.. +..+.. ....+ . ..|+++.+.. ...+| +.+..++.+..|.++..++ + +... ..
T Consensus 127 ~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~sp--dg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~ 204 (361)
T 3scy_A 127 IGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITP--DGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEA 204 (361)
T ss_dssp BCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECT--TSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEE
T ss_pred eCCCCcCcccceeEEccCCCCCccccCCCcceEEEECC--CCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccc
Confidence 963 221111 11110 0 1123454432 33344 4555688999999987554 3 3221 11
Q ss_pred ee--ecCccceEEEEeeCCceEEEEecC--CcEEEEE-cCCeeEEe-ecccccc--c--ccccCCCCCCCCe-EEEE-e-
Q psy7977 445 VT--LGTQPTVLKTFRSLSTTNVFACSD--RPTVIYS-SNHKLVFS-NVNLRQV--N--HMCSLNAESYPDS-LALA-T- 511 (1225)
Q Consensus 445 ~~--LG~~pV~L~~~~~~g~~~Vfa~sd--rP~liys-s~g~l~~~-pl~~~~v--~--~~s~F~se~~p~g-lv~v-s- 511 (1225)
.. .|..|.. ..+..+| ..+++.+. .-..+|. ..+.+... .+..... . ....|+ |+| ++++ .
T Consensus 205 ~~~~~~~~~~~-~~~spdg-~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~s----pdg~~l~v~~~ 278 (361)
T 3scy_A 205 FKVAPGSGPRH-LIFNSDG-KFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLS----PDGKYLYASNR 278 (361)
T ss_dssp EECCTTCCEEE-EEECTTS-SEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEEC----TTSSEEEEEEC
T ss_pred eecCCCCCCeE-EEEcCCC-CEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEEC----CCCCEEEEECC
Confidence 11 1333322 2222233 33444442 2222332 23433211 1111000 0 011122 332 3433 2
Q ss_pred C--CeEEEEEEcCC-CCe-eeEEEeCCCcccEEEEecCCCEEEEEE
Q psy7977 512 D--STFTFGTIDEI-QKL-HIRTVPLGEAPRRIAYQESSQTFGVIT 553 (1225)
Q Consensus 512 ~--~~LrI~~i~~~-~~l-~ir~IpLg~TprrIay~p~s~~~vV~t 553 (1225)
+ +.+.+..++.. .++ .+..++.+..|+.++++|..+.++++.
T Consensus 279 ~~~~~i~v~~~~~~~g~~~~~~~~~~g~~~~~~~~spdg~~l~~~~ 324 (361)
T 3scy_A 279 LKADGVAIFKVDETNGTLTKVGYQLTGIHPRNFIITPNGKYLLVAC 324 (361)
T ss_dssp SSSCEEEEEEECTTTCCEEEEEEEECSSCCCEEEECTTSCEEEEEE
T ss_pred CCCCEEEEEEEcCCCCcEEEeeEecCCCCCceEEECCCCCEEEEEE
Confidence 3 67999999743 333 566677788999999999999887776
No 127
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=90.55 E-value=25 Score=39.17 Aligned_cols=214 Identities=7% Similarity=-0.043 Sum_probs=101.6
Q ss_pred CCEEEEE-ECCeEEEEEeeccc---e-eEEe-eeccCceeEEEEeccCCCCCCCCccccCcEEEEEEecCCeEEEEeCCC
Q psy7977 316 KNQVLCA-TGCDVYYLEVHGSE---I-KQLA-HRALEYEVACLDISPLSNEETSSEPAKAQLAAVGLWTDISARLLSLPS 389 (1225)
Q Consensus 316 ~~~VlVa-sgg~Lv~feid~~~---L-~ev~-~~~l~~eIScLai~~~~~~~~~~~~~~s~~laVG~w~d~tv~IlsL~~ 389 (1225)
+.+++.+ .++.+.++.+.... . .... ...-...|+|++..+. ...++.|.. |++|++|++.+
T Consensus 118 g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-----------~~~l~t~s~-D~~v~lwd~~~ 185 (354)
T 2pbi_B 118 GCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNS-----------DMQILTASG-DGTCALWDVES 185 (354)
T ss_dssp SSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSS-----------SSEEEEEET-TSEEEEEETTT
T ss_pred CCEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCC-----------CCEEEEEeC-CCcEEEEeCCC
Confidence 3444444 57778777764321 0 0000 1112456788887642 456788887 99999999987
Q ss_pred cceEEeecCCCCCCcccEEEEeeCCeeEEEEEECCCcEEEEEEcCCCCccccceeeee-c-CccceEEEEeeCCceEEEE
Q psy7977 390 LEEVCKEPLGGEIIPRSILMTCFEGHCYLLVALGDGSMFYFSLDPASGRLTDKKKVTL-G-TQPTVLKTFRSLSTTNVFA 467 (1225)
Q Consensus 390 Le~v~~~~L~~~~~P~SIll~~l~~~~~LlVGl~nG~L~~y~ld~~sg~Ls~~k~~~L-G-~~pV~L~~~~~~g~~~Vfa 467 (1225)
.+.+..-.-. .....++.+..-....+|+.|..||.+..|.+.. ++. ...+ + ..+|.-..+...+ ..+..
T Consensus 186 ~~~~~~~~~h-~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~--~~~----~~~~~~h~~~v~~v~~~p~~-~~l~s 257 (354)
T 2pbi_B 186 GQLLQSFHGH-GADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRS--GQC----VQAFETHESDVNSVRYYPSG-DAFAS 257 (354)
T ss_dssp CCEEEEEECC-SSCEEEEEECCCSSCCEEEEEETTSCEEEEETTT--CCE----EEEECCCSSCEEEEEECTTS-SEEEE
T ss_pred CeEEEEEcCC-CCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCC--CcE----EEEecCCCCCeEEEEEeCCC-CEEEE
Confidence 5544321110 0111122222212346899999999999987653 221 1111 1 2233322222122 22222
Q ss_pred ec-CCcEEEEEcCCeeEEeecccccc-c--ccccCCCCCCCCeEEEE-eCCeEEEEEEcCCCCeeeEEEe-CCCcccEEE
Q psy7977 468 CS-DRPTVIYSSNHKLVFSNVNLRQV-N--HMCSLNAESYPDSLALA-TDSTFTFGTIDEIQKLHIRTVP-LGEAPRRIA 541 (1225)
Q Consensus 468 ~s-drP~liyss~g~l~~~pl~~~~v-~--~~s~F~se~~p~glv~v-s~~~LrI~~i~~~~~l~ir~Ip-Lg~TprrIa 541 (1225)
.| |...-+|.-+..-.......... . ....|+.. ..-++.. .++.+++-.+..... +..+. -...+..++
T Consensus 258 ~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~--g~~l~~g~~d~~i~vwd~~~~~~--~~~l~~h~~~v~~l~ 333 (354)
T 2pbi_B 258 GSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLS--GRLLFAGYNDYTINVWDVLKGSR--VSILFGHENRVSTLR 333 (354)
T ss_dssp EETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTT--SSEEEEEETTSCEEEEETTTCSE--EEEECCCSSCEEEEE
T ss_pred EeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCC--CCEEEEEECCCcEEEEECCCCce--EEEEECCCCcEEEEE
Confidence 22 23333333211100100110000 0 01122211 1223333 346888887754332 22332 235688999
Q ss_pred EecCCCEEEEEE
Q psy7977 542 YQESSQTFGVIT 553 (1225)
Q Consensus 542 y~p~s~~~vV~t 553 (1225)
++|..+.++.+.
T Consensus 334 ~spdg~~l~sgs 345 (354)
T 2pbi_B 334 VSPDGTAFCSGS 345 (354)
T ss_dssp ECTTSSCEEEEE
T ss_pred ECCCCCEEEEEc
Confidence 999999887775
No 128
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=90.54 E-value=5.2 Score=41.86 Aligned_cols=173 Identities=11% Similarity=0.044 Sum_probs=96.2
Q ss_pred eEEEEEEECCCCcEEEEEECCCCCceEEEEEEEecCCCCeEEEEEeeeeCCCCCCCcceEEEEEEEeC-CcEEEEEEEEe
Q psy7977 1004 VHNLLIIDQNTFEILHAHQLFPGEYALSLISSKFGEDPNTYFVLGTAVVHPEENEPKQGRIIIFHYDD-GKLQQIAEKEI 1082 (1225)
Q Consensus 1004 ~s~irlvdp~t~~~i~~~eL~~nE~~~si~~v~~~~~~~~~lvVGTa~~~~eed~~~~GrI~vf~i~~-~kL~lv~~~ev 1082 (1225)
...|++.|..+.+....... .+.+.++ .|..++ .+++++. .|.|++|++.. ++.+.+....-
T Consensus 21 ~~~i~~~d~~~~~~~~~~~~--~~~v~~~---~~spdg-~~l~~~~-----------~~~i~~~d~~~~~~~~~~~~~~~ 83 (297)
T 2ojh_A 21 RSSIEIFNIRTRKMRVVWQT--PELFEAP---NWSPDG-KYLLLNS-----------EGLLYRLSLAGDPSPEKVDTGFA 83 (297)
T ss_dssp CEEEEEEETTTTEEEEEEEE--SSCCEEE---EECTTS-SEEEEEE-----------TTEEEEEESSSCCSCEECCCTTC
T ss_pred ceeEEEEeCCCCceeeeccC--CcceEee---EECCCC-CEEEEEc-----------CCeEEEEeCCCCCCceEeccccc
Confidence 47899999998876644432 3344443 455444 5666652 35899999987 76655443322
Q ss_pred cCceeeeccc-cCeEEEEeC------CEEEEEEcCCCceeeeeecccceeEEEEEEEECCEEE-EeeccccEEEEEEecC
Q psy7977 1083 KGACYSMCEF-NGKLLASIN------STVRLFEWTNEKELRLECSHFNNIIALFLKVKGDFIL-VGDLMRSLTLLQYKTM 1154 (1225)
Q Consensus 1083 ~G~v~al~~f-~G~LLa~vg------~~l~vy~l~~~~~L~~e~~~~~~~i~~~l~~~g~~Il-vGD~~kSv~~l~y~~~ 1154 (1225)
.+.+.+++-- +|+.|+..+ .+|..++....+.-...... ..........|.+++ .+..-..+.+..++..
T Consensus 84 ~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~ 161 (297)
T 2ojh_A 84 TICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGTPRLMTKNL--PSYWHGWSPDGKSFTYCGIRDQVFDIYSMDID 161 (297)
T ss_dssp CCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCCCEECCSSS--SEEEEEECTTSSEEEEEEEETTEEEEEEEETT
T ss_pred cccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCceEEeecCC--CccceEECCCCCEEEEEECCCCceEEEEEECC
Confidence 3455554422 676666554 34444444433321111111 111122323456666 5655566778888777
Q ss_pred CCeEEEEeccCCCceeEEEEeeeCCc-EE-EEcCCCcEEEEEeCC
Q psy7977 1155 EGSFEEISRDYNPNWMTSIEILDDEL-FL-GAENSYNLFICQKDS 1197 (1225)
Q Consensus 1155 ~~~L~~~arD~~~~wvta~~~Ld~dt-~l-~aD~~gNl~vl~~~~ 1197 (1225)
..+...+... +.++.++.+-.++. ++ +++.++++.++.++.
T Consensus 162 ~~~~~~~~~~--~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~ 204 (297)
T 2ojh_A 162 SGVETRLTHG--EGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRV 204 (297)
T ss_dssp TCCEEECCCS--SSCEEEEEECTTSSEEEEEECTTSSCEEEEEET
T ss_pred CCcceEcccC--CCccccceECCCCCEEEEEecCCCCccEEEECC
Confidence 6666665543 45667777765654 33 455566777766653
No 129
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=90.00 E-value=26 Score=38.64 Aligned_cols=238 Identities=8% Similarity=0.020 Sum_probs=121.8
Q ss_pred CcEEEEecCCcceeeeec-----CCCCCcEEEEEecCCEEEEE--ECCeEEEEEeeccceeEEeeeccCceeEEEEeccC
Q psy7977 285 SAAILISTESKARVSSWE-----PPNGKSISVVSCNKNQVLCA--TGCDVYYLEVHGSEIKQLAHRALEYEVACLDISPL 357 (1225)
Q Consensus 285 ~~IRli~~~~~~~i~eW~-----~p~g~~Iv~As~n~~~VlVa--sgg~Lv~feid~~~L~ev~~~~l~~eIScLai~~~ 357 (1225)
.+|..++.++++....+. .+-|......+..+..+.++ .++.|..++....++ +.+......+..+++.+
T Consensus 17 ~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~~~~lyv~~~~~~~v~viD~~t~~~--~~~i~~~~~p~~i~~~~- 93 (328)
T 3dsm_A 17 ATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIRDGIGWIVVNNSHVIFAIDINTFKE--VGRITGFTSPRYIHFLS- 93 (328)
T ss_dssp BEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEETTEEEEEEGGGTEEEEEETTTCCE--EEEEECCSSEEEEEEEE-
T ss_pred ceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEECCEEEEEEcCCCEEEEEECcccEE--EEEcCCCCCCcEEEEeC-
Confidence 457777776644333331 12333344555677888887 357888876654433 22223335566777643
Q ss_pred CCCCCCCccccCcEEEEEEecCCeEEEEeCCCcceEEeecCCC----CCCcccEEEEeeCCeeEEEEEEC--CCcEEEEE
Q psy7977 358 SNEETSSEPAKAQLAAVGLWTDISARLLSLPSLEEVCKEPLGG----EIIPRSILMTCFEGHCYLLVALG--DGSMFYFS 431 (1225)
Q Consensus 358 ~~~~~~~~~~~s~~laVG~w~d~tv~IlsL~~Le~v~~~~L~~----~~~P~SIll~~l~~~~~LlVGl~--nG~L~~y~ 431 (1225)
...+.|+...+++|.++++.+.+......++. ..-|+.+++ -+ -.|+++.. ++.+..+
T Consensus 94 -----------~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~--~~--~~lyv~~~~~~~~v~vi- 157 (328)
T 3dsm_A 94 -----------DEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ--YG--KYVYVNCWSYQNRILKI- 157 (328)
T ss_dssp -----------TTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE--ET--TEEEEEECTTCCEEEEE-
T ss_pred -----------CCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE--EC--CEEEEEcCCCCCEEEEE-
Confidence 12577777338999999998876654444431 116788877 23 34666653 6666554
Q ss_pred EcCCCCccccceeeeecCccceEEEEeeCCceEEEEecCC-----------cE-EEEE-cCCeeE-Eeeccccccccccc
Q psy7977 432 LDPASGRLTDKKKVTLGTQPTVLKTFRSLSTTNVFACSDR-----------PT-VIYS-SNHKLV-FSNVNLRQVNHMCS 497 (1225)
Q Consensus 432 ld~~sg~Ls~~k~~~LG~~pV~L~~~~~~g~~~Vfa~sdr-----------P~-liys-s~g~l~-~~pl~~~~v~~~s~ 497 (1225)
|..++++. +....|..|..+.. ..+|. +++.+.. .. .++. ..+++. ...+... ..|
T Consensus 158 -D~~t~~~~--~~i~~g~~p~~i~~-~~dG~--l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g----~~p 227 (328)
T 3dsm_A 158 -DTETDKVV--DELTIGIQPTSLVM-DKYNK--MWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLG----DWP 227 (328)
T ss_dssp -ETTTTEEE--EEEECSSCBCCCEE-CTTSE--EEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTT----CCC
T ss_pred -ECCCCeEE--EEEEcCCCccceEE-cCCCC--EEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCC----CCc
Confidence 55555442 23345666654432 22232 4444322 12 2222 223322 1122100 011
Q ss_pred CCCCCCC-CeEEEEeCCeEEEEEEcCCC-Cee-eEEEeC-CCcccEEEEecCCCEEEEEE
Q psy7977 498 LNAESYP-DSLALATDSTFTFGTIDEIQ-KLH-IRTVPL-GEAPRRIAYQESSQTFGVIT 553 (1225)
Q Consensus 498 F~se~~p-~glv~vs~~~LrI~~i~~~~-~l~-ir~IpL-g~TprrIay~p~s~~~vV~t 553 (1225)
..-.-.| +..+|+.+. .|..++... ++. ...++. +..|..|+++|..+.++|+.
T Consensus 228 ~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~ 285 (328)
T 3dsm_A 228 SEVQLNGTRDTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVAD 285 (328)
T ss_dssp EEEEECTTSCEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEE
T ss_pred eeEEEecCCCEEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEc
Confidence 1101112 456676665 455565432 221 122343 57899999999666666664
No 130
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=89.51 E-value=24 Score=37.47 Aligned_cols=246 Identities=10% Similarity=0.020 Sum_probs=121.6
Q ss_pred cCcEEEEecCCcceeeeecCC-CCCcEEEEEec--CCEEEEE-ECCeEEEEEeeccceeEEeeeccCceeEEEEeccCCC
Q psy7977 284 PSAAILISTESKARVSSWEPP-NGKSISVVSCN--KNQVLCA-TGCDVYYLEVHGSEIKQLAHRALEYEVACLDISPLSN 359 (1225)
Q Consensus 284 ~~~IRli~~~~~~~i~eW~~p-~g~~Iv~As~n--~~~VlVa-sgg~Lv~feid~~~L~ev~~~~l~~eIScLai~~~~~ 359 (1225)
.+.||+.+.++++.+...... .+..|.+.+.. +++++.+ .++.+.+.++..++..... ..-...+.|++.
T Consensus 44 D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~-~~h~~~~~~~~~----- 117 (318)
T 4ggc_A 44 DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNM-TSHSARVGSLSW----- 117 (318)
T ss_dssp TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE-ECCSSCEEEEEE-----
T ss_pred CCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEe-cCccceEEEeec-----
Confidence 456888887776655554432 23457776664 4566665 5789988887755332211 112233445443
Q ss_pred CCCCCccccCcEEEEEEecCCeEEEEeCCCc-ceEEeecCCCCCCcccEEEEee-CCeeEEEEEECCCcEEEEEEcCCCC
Q psy7977 360 EETSSEPAKAQLAAVGLWTDISARLLSLPSL-EEVCKEPLGGEIIPRSILMTCF-EGHCYLLVALGDGSMFYFSLDPASG 437 (1225)
Q Consensus 360 ~~~~~~~~~s~~laVG~w~d~tv~IlsL~~L-e~v~~~~L~~~~~P~SIll~~l-~~~~~LlVGl~nG~L~~y~ld~~sg 437 (1225)
...+++.|.. ++.++++....- ..+....- ....+....+ ....+|+.+..||.+..|.+.....
T Consensus 118 --------~~~~l~s~~~-~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~ 184 (318)
T 4ggc_A 118 --------NSYILSSGSR-SGHIHHHDVRVAEHHVATLSG----HSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEG 184 (318)
T ss_dssp --------ETTEEEEEET-TSEEEEEETTSSSCEEEEEEC----CSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTT
T ss_pred --------CCCEEEEEec-CCceEeeecCCCceeEEEEcC----ccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcc
Confidence 2457788876 999999888642 22222111 1111222222 3456899999999999887653211
Q ss_pred ccccceeeeecCccceEEEEeeCCce-EEEEecCCc--EEEEEcCC-eeEEeecccccccccccCCCCCCCCeEEEEe--
Q psy7977 438 RLTDKKKVTLGTQPTVLKTFRSLSTT-NVFACSDRP--TVIYSSNH-KLVFSNVNLRQVNHMCSLNAESYPDSLALAT-- 511 (1225)
Q Consensus 438 ~Ls~~k~~~LG~~pV~L~~~~~~g~~-~Vfa~sdrP--~liyss~g-~l~~~pl~~~~v~~~s~F~se~~p~glv~vs-- 511 (1225)
.........-...++....+...+.. ..++.++.. .-++.... ...........+..+ .|. ...+.++.++
T Consensus 185 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~v~~~-~~~--~~~~~~~~~sg~ 261 (318)
T 4ggc_A 185 GWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSI-LWS--PHYKELISGHGF 261 (318)
T ss_dssp BSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEECSSCEEEE-EEE--TTTTEEEEEECT
T ss_pred cccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccccceeeeeee-eec--ccccceEEEEEc
Confidence 11111111112223333222211222 222333322 22232221 111111111112111 121 1123455544
Q ss_pred -CCeEEEEEEcCCCCeeeEEEeC-CCcccEEEEecCCCEEEEEE
Q psy7977 512 -DSTFTFGTIDEIQKLHIRTVPL-GEAPRRIAYQESSQTFGVIT 553 (1225)
Q Consensus 512 -~~~LrI~~i~~~~~l~ir~IpL-g~TprrIay~p~s~~~vV~t 553 (1225)
++.++|-.+.... .++++.= ...++.++++|..+.++.+.
T Consensus 262 ~d~~i~iwd~~~~~--~~~~l~gH~~~V~~l~~spdg~~l~S~s 303 (318)
T 4ggc_A 262 AQNQLVIWKYPTMA--KVAELKGHTSRVLSLTMSPDGATVASAA 303 (318)
T ss_dssp TTCCEEEEETTTCC--EEEEECCCSSCEEEEEECTTSSCEEEEE
T ss_pred CCCEEEEEECCCCc--EEEEEcCCCCCEEEEEEcCCCCEEEEEe
Confidence 4678888776533 2334432 35688999999998877665
No 131
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=89.22 E-value=37 Score=39.27 Aligned_cols=287 Identities=13% Similarity=0.063 Sum_probs=147.4
Q ss_pred CCeEEEEEcC-----CCEEEEEEEeCcccCCceeeeecEEEEecccCcceeEEEecCC-eEEEEeec--------CCeEE
Q psy7977 79 SERYLLGDLA-----GRLFMLLLEKEEKMDGTFSVKEPKVELLGEISIPECLTYLDNG-VVFVGSRL--------GDSQL 144 (1225)
Q Consensus 79 ~~~~LL~~e~-----G~Ly~l~l~~d~~~~Gr~~Vs~i~i~~~~tis~~SsL~~L~~g-~LFvGS~~--------GDS~L 144 (1225)
..++|+.+.. |.++.|. .+ +++ .+..+ +.+.. |. +.+-.+| ++|+++.+ .+..+
T Consensus 44 ~~~vyV~~~~~~~~~~~V~ViD--~~---t~~-v~~~I---~vG~~--P~-va~spDG~~lyVan~~~~r~~~G~~~~~V 111 (386)
T 3sjl_D 44 ARRVYVNDPAHFAAVTQQFVID--GE---AGR-VIGMI---DGGFL--PN-PVVADDGSFIAHASTVFSRIARGERTDYV 111 (386)
T ss_dssp TTEEEEEECGGGCSSEEEEEEE--TT---TTE-EEEEE---EECSS--CE-EEECTTSSCEEEEEEEEEETTEEEEEEEE
T ss_pred CCEEEEEcCcccCCCCEEEEEE--CC---CCe-EEEEE---ECCCC--Cc-EEECCCCCEEEEEcccccccccCCCCCEE
Confidence 6778888874 5555443 22 232 22222 23333 44 6665554 69998854 13445
Q ss_pred EEEeeCCCCCCCceEEEeeeeccc--------cceeeEEeeccccCCccEEEEEecCCCccEEEEeecceeeEEEEeeCC
Q psy7977 145 VKLNRSPDENGTYVSVMESFTNLA--------PIIDMVVVDLERQGQGQLVTCSGGFKEGSLRIIRNGIGIEEHACIDLP 216 (1225)
Q Consensus 145 ~~i~~~~ddd~~~l~v~d~l~Nlg--------PI~D~~v~d~~~~~~~qLva~sG~g~~GsLrilR~GI~~~~~~s~eLp 216 (1225)
..|... .++++.+++--+ --..+.+.. ....+|+++ .+.++++.++--.= -+.++.+++|
T Consensus 112 sviD~~------t~~v~~~I~v~~g~r~~~g~~P~~~a~sp----DGk~lyVan-~~~~~~VsVID~~t-~~vv~tI~v~ 179 (386)
T 3sjl_D 112 EVFDPV------TLLPTADIELPDAPRFLVGTYPWMTSLTP----DGKTLLFYQ-FSPAPAVGVVDLEG-KAFKRMLDVP 179 (386)
T ss_dssp EEECTT------TCCEEEEEEETTCCCCCBSCCGGGEEECT----TSSEEEEEE-CSSSCEEEEEETTT-TEEEEEEECC
T ss_pred EEEECC------CCeEEEEEECCCccccccCCCCceEEEcC----CCCEEEEEE-cCCCCeEEEEECCC-CcEEEEEECC
Confidence 555432 245566654211 011233321 123566654 34457788775432 3567778888
Q ss_pred CcceEeEeeeCCCCCCccEEEEEcCCceEEEEEcC-ceeeeeccCCcccccCeEE--EEee-CCCeEEEEccCc-EEEEe
Q psy7977 217 GIKGIWALSIGSPKNLDNTLVLSFVGHTRVLTLSG-AEVEETEMGGFTSDQQTFY--CGNV-DPRTVLQVTPSA-AILIS 291 (1225)
Q Consensus 217 gv~~iWtl~~~~~~~~d~yLVlSf~~~T~Vl~i~g-e~veEv~~sgF~~~~~TL~--ag~l-~~~~iVQVT~~~-IRli~ 291 (1225)
++.+++... .+.|+.++-.++..++.... ..+.......|..+...++ .... .+++++=|+..+ |..++
T Consensus 180 g~~~~~P~g------~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs~~g~V~v~d 253 (386)
T 3sjl_D 180 DCYHIFPTA------PDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQID 253 (386)
T ss_dssp SEEEEEEEE------TTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEE
T ss_pred CcceeecCC------CceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEEEeCCCEEEEEE
Confidence 876665432 23444444433333333311 1121111123333322222 1111 244444455544 45555
Q ss_pred cCCc--ceee------------eecCCCCCcEEEEEecCCEEEEE-E----------CCeEEEEEeeccceeEEeeeccC
Q psy7977 292 TESK--ARVS------------SWEPPNGKSISVVSCNKNQVLCA-T----------GCDVYYLEVHGSEIKQLAHRALE 346 (1225)
Q Consensus 292 ~~~~--~~i~------------eW~~p~g~~Iv~As~n~~~VlVa-s----------gg~Lv~feid~~~L~ev~~~~l~ 346 (1225)
..+. +.+. .|.| .+......+-..+.+.++ . +++|..+++.. .+.+.+..+.
T Consensus 254 ~~~~~~~v~~~~~~~~~~~~~~g~~p-~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t--~kv~~~i~vg 330 (386)
T 3sjl_D 254 LSSGDAKFLPAVEALTEAERADGWRP-GGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKT--GERLAKFEMG 330 (386)
T ss_dssp CTTSSCEECCCEESSCHHHHHTTEEE-CSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTT--CCEEEEEEEE
T ss_pred CCCCcceeecceeccccccccccccC-CCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCC--CeEEEEEECC
Confidence 4321 2233 3444 333333344456677775 2 14676665543 3344555666
Q ss_pred ceeEEEEeccCCCCCCCCccccCcEEEEEEecCCeEEEEeCCCcceEEeecCCCCCCcccEEEE
Q psy7977 347 YEVACLDISPLSNEETSSEPAKAQLAAVGLWTDISARLLSLPSLEEVCKEPLGGEIIPRSILMT 410 (1225)
Q Consensus 347 ~eIScLai~~~~~~~~~~~~~~s~~laVG~w~d~tv~IlsL~~Le~v~~~~L~~~~~P~SIll~ 410 (1225)
..+..|++++- ....+.+..|.+++|.++...+.+.+.+..++ ..|.++++.
T Consensus 331 ~~~~~lavs~D----------~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~~--~~p~~l~~s 382 (386)
T 3sjl_D 331 HEIDSINVSQD----------EKPLLYALSTGDKTLYIHDAESGEELRSVNQL--GHGPQVITT 382 (386)
T ss_dssp EEECEEEECSS----------SSCEEEEEETTTTEEEEEETTTCCEEEEECCC--CSSCCEEEE
T ss_pred CCcceEEECCC----------CCeEEEEEcCCCCeEEEEECCCCcEEEEecCC--CCCceeEEC
Confidence 67777888652 23477888888999999999998888776664 567777764
No 132
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=89.04 E-value=21 Score=40.12 Aligned_cols=133 Identities=13% Similarity=0.174 Sum_probs=78.9
Q ss_pred CcEEEEecCCcceeeeec----CCCCCcEEEEEec--CCEEEE-E-ECCeEEEEEeecc-c-eeEEeeeccCceeEEEEe
Q psy7977 285 SAAILISTESKARVSSWE----PPNGKSISVVSCN--KNQVLC-A-TGCDVYYLEVHGS-E-IKQLAHRALEYEVACLDI 354 (1225)
Q Consensus 285 ~~IRli~~~~~~~i~eW~----~p~g~~Iv~As~n--~~~VlV-a-sgg~Lv~feid~~-~-L~ev~~~~l~~eIScLai 354 (1225)
..|++.+...++.+..+. ......|...+++ +..+++ + .++.+.++++... . +... ..-...|.|+++
T Consensus 180 ~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~--~~h~~~v~~v~~ 257 (380)
T 3iz6_a 180 QTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTY--HGHEGDINSVKF 257 (380)
T ss_dssp SCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEE--CCCSSCCCEEEE
T ss_pred CcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEE--CCcCCCeEEEEE
Confidence 346666666554444442 1123357776664 334444 4 5788988887532 2 2221 123467889988
Q ss_pred ccCCCCCCCCccccCcEEEEEEecCCeEEEEeCCCcceEEeecCC----CCC--CcccEEEEeeCCeeEEEEEECCCcEE
Q psy7977 355 SPLSNEETSSEPAKAQLAAVGLWTDISARLLSLPSLEEVCKEPLG----GEI--IPRSILMTCFEGHCYLLVALGDGSMF 428 (1225)
Q Consensus 355 ~~~~~~~~~~~~~~s~~laVG~w~d~tv~IlsL~~Le~v~~~~L~----~~~--~P~SIll~~l~~~~~LlVGl~nG~L~ 428 (1225)
.+- ..+++.|.. |++|+||++.+-+.+...... ... ...++++. ....+|+.|..||.+.
T Consensus 258 ~p~-----------~~~l~s~s~-D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s--~~g~~l~~g~~dg~i~ 323 (380)
T 3iz6_a 258 FPD-----------GQRFGTGSD-DGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFS--ISGRLLFAGYSNGDCY 323 (380)
T ss_dssp CTT-----------SSEEEEECS-SSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEEC--SSSSEEEEECTTSCEE
T ss_pred ecC-----------CCeEEEEcC-CCeEEEEECCCCcEEEEecccccccccccCceEEEEEC--CCCCEEEEEECCCCEE
Confidence 752 457888887 999999999865443321110 011 12344433 2457899999999999
Q ss_pred EEEEc
Q psy7977 429 YFSLD 433 (1225)
Q Consensus 429 ~y~ld 433 (1225)
.|...
T Consensus 324 vwd~~ 328 (380)
T 3iz6_a 324 VWDTL 328 (380)
T ss_dssp EEETT
T ss_pred EEECC
Confidence 88754
No 133
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=88.71 E-value=28 Score=37.20 Aligned_cols=245 Identities=10% Similarity=0.043 Sum_probs=117.3
Q ss_pred cceeEEEecCC-eEEEEeecCCeEEEEEeeCCCCCCCceEEEeeeeccc------cceeeEEeeccccCCccEEEEEec-
Q psy7977 121 IPECLTYLDNG-VVFVGSRLGDSQLVKLNRSPDENGTYVSVMESFTNLA------PIIDMVVVDLERQGQGQLVTCSGG- 192 (1225)
Q Consensus 121 ~~SsL~~L~~g-~LFvGS~~GDS~L~~i~~~~ddd~~~l~v~d~l~Nlg------PI~D~~v~d~~~~~~~qLva~sG~- 192 (1225)
.|.+++.-.+| .+|+++. .+..++.|.... .+.+..+..-+ .+.++.+.. ....++++++.
T Consensus 35 ~~~~~~~s~dg~~l~v~~~-~~~~v~~~d~~~------~~~~~~~~~~~~~~~~~~~~~~~~s~----dg~~l~~~~~~~ 103 (337)
T 1pby_B 35 TPMVPMVAPGGRIAYATVN-KSESLVKIDLVT------GETLGRIDLSTPEERVKSLFGAALSP----DGKTLAIYESPV 103 (337)
T ss_dssp CCCCEEECTTSSEEEEEET-TTTEEEEEETTT------CCEEEEEECCBTTEEEECTTCEEECT----TSSEEEEEEEEE
T ss_pred CccceEEcCCCCEEEEEeC-CCCeEEEEECCC------CCeEeeEEcCCcccccccccceEECC----CCCEEEEEeccc
Confidence 36777777776 6777664 455677776432 23333343222 344555432 12356665421
Q ss_pred ------C--CCccEEEEeecceeeEEEEeeCCCcceEeEeeeCCCCCCccEEEEEcCCceEEEEEcCcee-eeecc----
Q psy7977 193 ------F--KEGSLRIIRNGIGIEEHACIDLPGIKGIWALSIGSPKNLDNTLVLSFVGHTRVLTLSGAEV-EETEM---- 259 (1225)
Q Consensus 193 ------g--~~GsLrilR~GI~~~~~~s~eLpgv~~iWtl~~~~~~~~d~yLVlSf~~~T~Vl~i~ge~v-eEv~~---- 259 (1225)
. .++.+.++.-.= -+....++.+. ..+.+... ...++|+++ .+.-.++.+...++ ..+..
T Consensus 104 ~~~~~~~~~~~~~i~v~d~~~-~~~~~~~~~~~--~~~~~~~s---~dg~~l~~~-~~~i~~~d~~~~~~~~~~~~~~~~ 176 (337)
T 1pby_B 104 RLELTHFEVQPTRVALYDAET-LSRRKAFEAPR--QITMLAWA---RDGSKLYGL-GRDLHVMDPEAGTLVEDKPIQSWE 176 (337)
T ss_dssp EECSSCEEECCCEEEEEETTT-TEEEEEEECCS--SCCCEEEC---TTSSCEEEE-SSSEEEEETTTTEEEEEECSTTTT
T ss_pred ccccccccccCceEEEEECCC-CcEEEEEeCCC--CcceeEEC---CCCCEEEEe-CCeEEEEECCCCcEeeeeeccccC
Confidence 1 457777775421 12233333321 11222222 223556665 23323333321122 22211
Q ss_pred --CCcccccCeEEEEeeCCCeEEEEccC---------------cEEEEecCCcceeeeecCCCCCcEEEEEec--CCEEE
Q psy7977 260 --GGFTSDQQTFYCGNVDPRTVLQVTPS---------------AAILISTESKARVSSWEPPNGKSISVVSCN--KNQVL 320 (1225)
Q Consensus 260 --sgF~~~~~TL~ag~l~~~~iVQVT~~---------------~IRli~~~~~~~i~eW~~p~g~~Iv~As~n--~~~Vl 320 (1225)
..|..+...+++..-.++.+..+... .|.+++...++.......+.+..+...+.. +.+++
T Consensus 177 ~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~ 256 (337)
T 1pby_B 177 AETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAF 256 (337)
T ss_dssp TTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEE
T ss_pred CCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEE
Confidence 12444445555444333333222111 466777665433211111222234333333 44555
Q ss_pred EEECCeEEEEEeeccceeEEeeeccCceeEEEEeccCCCCCCCCccccCcEEEEEEecCCeEEEEeCCCcceEEeecC
Q psy7977 321 CATGCDVYYLEVHGSEIKQLAHRALEYEVACLDISPLSNEETSSEPAKAQLAAVGLWTDISARLLSLPSLEEVCKEPL 398 (1225)
Q Consensus 321 Vasgg~Lv~feid~~~L~ev~~~~l~~eIScLai~~~~~~~~~~~~~~s~~laVG~w~d~tv~IlsL~~Le~v~~~~L 398 (1225)
++ ++.|..+++...++ +........+.++++.+- .++++++.+ +++|.+|++.+.+.+..-.+
T Consensus 257 ~~-~~~v~~~d~~~~~~--~~~~~~~~~~~~~~~s~d-----------g~~l~~~~~-~~~i~v~d~~~~~~~~~~~~ 319 (337)
T 1pby_B 257 GA-YNVLESFDLEKNAS--IKRVPLPHSYYSVNVSTD-----------GSTVWLGGA-LGDLAAYDAETLEKKGQVDL 319 (337)
T ss_dssp EE-ESEEEEEETTTTEE--EEEEECSSCCCEEEECTT-----------SCEEEEESB-SSEEEEEETTTCCEEEEEEC
T ss_pred Ee-CCeEEEEECCCCcC--cceecCCCceeeEEECCC-----------CCEEEEEcC-CCcEEEEECcCCcEEEEEEc
Confidence 55 67788887654432 233344566777877542 457778766 99999999987766554333
No 134
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=88.31 E-value=33 Score=37.56 Aligned_cols=113 Identities=13% Similarity=0.165 Sum_probs=68.6
Q ss_pred CcEEEEEecCCEEEEE-ECCeEEEEEeeccceeEEeee--c-cCceeEEEEeccCCCCCCCCccccCcEEEEEEecCCeE
Q psy7977 307 KSISVVSCNKNQVLCA-TGCDVYYLEVHGSEIKQLAHR--A-LEYEVACLDISPLSNEETSSEPAKAQLAAVGLWTDISA 382 (1225)
Q Consensus 307 ~~Iv~As~n~~~VlVa-sgg~Lv~feid~~~L~ev~~~--~-l~~eIScLai~~~~~~~~~~~~~~s~~laVG~w~d~tv 382 (1225)
..|.+.+....+++.+ .++.|.++++..+........ . -...|.|++..+. ..+++.|.+ |++|
T Consensus 15 ~~v~~~~~s~~~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~-----------~~~las~s~-D~~v 82 (330)
T 2hes_X 15 EKIWSFDFSQGILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPH-----------TSLLAAGSF-DSTV 82 (330)
T ss_dssp SCEEEEEEETTEEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTT-----------SSEEEEEET-TSCE
T ss_pred CceeeeccCCCEEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCC-----------CCEEEEEeC-CCcE
Confidence 3577777777744444 578898888865433332222 1 3457899998762 467889987 9999
Q ss_pred EEEeCCCc-----ceEEeecCCCCCCcccEEEEee-CCeeEEEEEECCCcEEEEEEc
Q psy7977 383 RLLSLPSL-----EEVCKEPLGGEIIPRSILMTCF-EGHCYLLVALGDGSMFYFSLD 433 (1225)
Q Consensus 383 ~IlsL~~L-----e~v~~~~L~~~~~P~SIll~~l-~~~~~LlVGl~nG~L~~y~ld 433 (1225)
+||++..- ..-....+.+ ....+.-+.+ +...+|..|-.||.+..+.++
T Consensus 83 ~iw~~~~~~~~~~~~~~~~~~~~--h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~ 137 (330)
T 2hes_X 83 SIWAKEESADRTFEMDLLAIIEG--HENEVKGVAWSNDGYYLATCSRDKSVWIWETD 137 (330)
T ss_dssp EEEEC-------CCCEEEEEEC------CEEEEEECTTSCEEEEEETTSCEEEEECC
T ss_pred EEEEcccCcCccccceeEEEEcC--CCCcEEEEEECCCCCEEEEEeCCCEEEEEecc
Confidence 99998421 1111111211 1112222223 245789999999999999885
No 135
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=87.86 E-value=33 Score=36.93 Aligned_cols=116 Identities=16% Similarity=0.086 Sum_probs=67.5
Q ss_pred cEEEEEec--CCEEEEE-ECCeEEEEEeeccceeEEee-eccCceeEEEEeccCCCCCCCCccccCcEEEEEEecCCeEE
Q psy7977 308 SISVVSCN--KNQVLCA-TGCDVYYLEVHGSEIKQLAH-RALEYEVACLDISPLSNEETSSEPAKAQLAAVGLWTDISAR 383 (1225)
Q Consensus 308 ~Iv~As~n--~~~VlVa-sgg~Lv~feid~~~L~ev~~-~~l~~eIScLai~~~~~~~~~~~~~~s~~laVG~w~d~tv~ 383 (1225)
.|.+++.+ +.+++.+ .++.+.+++++......+.. ..-...|.|++..+. ....+++.|.. |++|+
T Consensus 11 ~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~---------~~g~~l~s~s~-D~~v~ 80 (297)
T 2pm7_B 11 MIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHP---------KFGTILASCSY-DGKVM 80 (297)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCG---------GGCSEEEEEET-TTEEE
T ss_pred ceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCC---------CcCCEEEEEcC-CCEEE
Confidence 46555554 4455555 57888888876431111111 123467889988541 12467888887 99999
Q ss_pred EEeCCCc--ceEEeecCCCCCCcccEEEEeeCCeeEEEEEECCCcEEEEEEcC
Q psy7977 384 LLSLPSL--EEVCKEPLGGEIIPRSILMTCFEGHCYLLVALGDGSMFYFSLDP 434 (1225)
Q Consensus 384 IlsL~~L--e~v~~~~L~~~~~P~SIll~~l~~~~~LlVGl~nG~L~~y~ld~ 434 (1225)
||++.+- ..+...... .....++.+..-+...+|..|..||.+..|.+..
T Consensus 81 iWd~~~~~~~~~~~~~~h-~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~ 132 (297)
T 2pm7_B 81 IWKEENGRWSQIAVHAVH-SASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKE 132 (297)
T ss_dssp EEEBSSSCBCCCEEECCC-SSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCS
T ss_pred EEEcCCCceEEEEEeecC-CCceeEEEeCcCCCCcEEEEEECCCcEEEEEecC
Confidence 9999642 222211110 1122334333211246899999999999998764
No 136
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=87.86 E-value=42 Score=38.19 Aligned_cols=241 Identities=8% Similarity=-0.051 Sum_probs=115.4
Q ss_pred cEEEEecCCcceeeeecCCCCCcEEEEEecCCEEEEEE-----------CCeEEEEEeeccceeEEeeeccC--------
Q psy7977 286 AAILISTESKARVSSWEPPNGKSISVVSCNKNQVLCAT-----------GCDVYYLEVHGSEIKQLAHRALE-------- 346 (1225)
Q Consensus 286 ~IRli~~~~~~~i~eW~~p~g~~Iv~As~n~~~VlVas-----------gg~Lv~feid~~~L~ev~~~~l~-------- 346 (1225)
.|.++|.++++.+..+....+ .=.+.+-.+.++.++. ++.+..|... .++.+....+.
T Consensus 48 ~v~v~D~~t~~~~~~i~~g~~-p~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~--t~~~~~~i~~~~~~~~~~g 124 (373)
T 2mad_H 48 QQWVLDAGSGSILGHVNGGFL-PNPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPV--TFLPIADIELPDAPRFDVG 124 (373)
T ss_pred EEEEEECCCCeEEEEecCCCC-CCeEECCCCCEEEEEeccccccccCCCCCeEEEEECC--CCcEEEEEECCCccccccC
Confidence 566677666555555543322 2223333456677662 2446565543 33333333332
Q ss_pred ceeEEEEeccCCCCCCCCccccCcEEEEEEec-CCeEEEEeCCCcceEEe-ecCCCCCCcccEEEEeeCCeeEEEEEECC
Q psy7977 347 YEVACLDISPLSNEETSSEPAKAQLAAVGLWT-DISARLLSLPSLEEVCK-EPLGGEIIPRSILMTCFEGHCYLLVALGD 424 (1225)
Q Consensus 347 ~eIScLai~~~~~~~~~~~~~~s~~laVG~w~-d~tv~IlsL~~Le~v~~-~~L~~~~~P~SIll~~l~~~~~LlVGl~n 424 (1225)
.....+++++ ..++++|+... +++|.+++ .+.+.+.. ..+ |..+.+..-+...| .....|
T Consensus 125 ~~p~~~~~sp-----------DG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~-----~~~~~~~~~~~~~~-~~~~~d 186 (373)
T 2mad_H 125 PYSWMNANTP-----------NNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSS-----PTCYHIHPGAPSTF-YLLCAQ 186 (373)
T ss_pred CCccceEECC-----------CCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCC-----CceEEEEeCCCceE-EEEcCC
Confidence 2233455544 25678888753 58899999 87776554 333 22233333333333 345578
Q ss_pred CcEEEEEEcCCCCccccc-e--eeeecCccceEEEE-eeCCceEEEEecC-CcEEEEEcCCeeEE-eeccc--cc--ccc
Q psy7977 425 GSMFYFSLDPASGRLTDK-K--KVTLGTQPTVLKTF-RSLSTTNVFACSD-RPTVIYSSNHKLVF-SNVNL--RQ--VNH 494 (1225)
Q Consensus 425 G~L~~y~ld~~sg~Ls~~-k--~~~LG~~pV~L~~~-~~~g~~~Vfa~sd-rP~liyss~g~l~~-~pl~~--~~--v~~ 494 (1225)
|.++.+.. +++.... + ..+.+..|+...+. ...+...+|+..+ +-+++-...+...+ .++.. .. ...
T Consensus 187 g~~~~vd~---~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~ 263 (373)
T 2mad_H 187 GGLAKTDH---AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADT 263 (373)
T ss_pred CCEEEEEC---CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccc
Confidence 88887765 3332211 1 11255566544432 1122222333321 22333222221111 11110 00 000
Q ss_pred ccc-------CCCCCCCCeEEEEeCC----------eEEEEEEcCCCCeeeEEEeCCCcccEEEEecCCCEEEEEE
Q psy7977 495 MCS-------LNAESYPDSLALATDS----------TFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVIT 553 (1225)
Q Consensus 495 ~s~-------F~se~~p~glv~vs~~----------~LrI~~i~~~~~l~ir~IpLg~TprrIay~p~s~~~vV~t 553 (1225)
..| |+. ....+|+..+ .=.|.-+|....-.+++||++..|..++++|..+.+++++
T Consensus 264 ~~p~g~~~~~~s~---d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g~~p~~i~~s~Dg~~~l~v~ 336 (373)
T 2mad_H 264 WRPGGWQQVAYLK---SSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGHDVDAISVAQDGGPDLYAL 336 (373)
T ss_pred eecCceEeEEECC---CCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECCCCcCeEEECCCCCeEEEEE
Confidence 001 111 1123343211 1145556665566779999999999999999999444444
No 137
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=87.66 E-value=31 Score=36.53 Aligned_cols=211 Identities=12% Similarity=0.043 Sum_probs=104.9
Q ss_pred CEEEEEECCeEEEEEeeccceeEEee-eccCceeEEEEeccCCCCCCCCccccCcEEEEEEecCCeEEEEeCCCcceEEe
Q psy7977 317 NQVLCATGCDVYYLEVHGSEIKQLAH-RALEYEVACLDISPLSNEETSSEPAKAQLAAVGLWTDISARLLSLPSLEEVCK 395 (1225)
Q Consensus 317 ~~VlVasgg~Lv~feid~~~L~ev~~-~~l~~eIScLai~~~~~~~~~~~~~~s~~laVG~w~d~tv~IlsL~~Le~v~~ 395 (1225)
+.|+++.+++|.+.++..+++...-+ ..-...|+|++..+. .++++.|.. |++|+||++.+.+.+..
T Consensus 37 ~~lAvg~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~-----------~~~l~sgs~-Dg~v~iw~~~~~~~~~~ 104 (318)
T 4ggc_A 37 NVLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKE-----------GNYLAVGTS-SAEVQLWDVQQQKRLRN 104 (318)
T ss_dssp SEEEEEETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTT-----------SSEEEEEET-TSEEEEEETTTTEEEEE
T ss_pred CEEEEEeCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCC-----------CCEEEEEEC-CCcEEEeecCCceeEEE
Confidence 44444467788888776655443322 223467999998752 568999987 99999999987665543
Q ss_pred ecCCCCCCcccEEEEeeCCeeEEEEEECCCcEEEEEEcCCCCccccceeeeec-CccceEEEEeeCCceEEEEe-cCCcE
Q psy7977 396 EPLGGEIIPRSILMTCFEGHCYLLVALGDGSMFYFSLDPASGRLTDKKKVTLG-TQPTVLKTFRSLSTTNVFAC-SDRPT 473 (1225)
Q Consensus 396 ~~L~~~~~P~SIll~~l~~~~~LlVGl~nG~L~~y~ld~~sg~Ls~~k~~~LG-~~pV~L~~~~~~g~~~Vfa~-sdrP~ 473 (1225)
..-. ......+.. ....|..|..+|.+..+........ .....| ..++....+...+. .++.. .+...
T Consensus 105 ~~~h---~~~~~~~~~--~~~~l~s~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~-~l~s~~~d~~i 174 (318)
T 4ggc_A 105 MTSH---SARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHH----VATLSGHSQEVCGLRWAPDGR-HLASGGNDNLV 174 (318)
T ss_dssp EECC---SSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCE----EEEEECCSSCEEEEEECTTSS-EEEEEETTSCE
T ss_pred ecCc---cceEEEeec--CCCEEEEEecCCceEeeecCCCcee----EEEEcCccCceEEEEEcCCCC-EEEEEecCcce
Confidence 2211 111122222 2346888888888877664422110 011112 12222222222222 22222 22223
Q ss_pred EEEEc-CCe-----eEEeecccccccccccCCCCCCCCeEEEEeC---CeEEEEEEcCCCCeeeEEEeCCCcccEEEEec
Q psy7977 474 VIYSS-NHK-----LVFSNVNLRQVNHMCSLNAESYPDSLALATD---STFTFGTIDEIQKLHIRTVPLGEAPRRIAYQE 544 (1225)
Q Consensus 474 liyss-~g~-----l~~~pl~~~~v~~~s~F~se~~p~glv~vs~---~~LrI~~i~~~~~l~ir~IpLg~TprrIay~p 544 (1225)
.++.. .++ ..........+..++.. ..-+..+..+++ +.+++-.... ........-...+..++++|
T Consensus 175 ~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~~~~~~~~~~~i~lwd~~~--~~~~~~~~~~~~v~~~~~~~ 250 (318)
T 4ggc_A 175 NVWPSAPGEGGWVPLQTFTQHQGAVKAVAWC--PWQSNVLATGGGTSDRHIRIWNVCS--GACLSAVDAHSQVCSILWSP 250 (318)
T ss_dssp EEEESSCBTTBSCCSEEECCCCSCEEEEEEC--TTSTTEEEEEECTTTCEEEEEETTT--CCEEEEEECSSCEEEEEEET
T ss_pred eEEECCCCcccccceeeecccCCceEEEEec--CCCCcEEEEEecCCCCEEEEEeccc--ccccccccceeeeeeeeecc
Confidence 33321 111 00111011111111111 112334444443 3566655433 33444566677788999999
Q ss_pred CCCEEEEEE
Q psy7977 545 SSQTFGVIT 553 (1225)
Q Consensus 545 ~s~~~vV~t 553 (1225)
..+.+++++
T Consensus 251 ~~~~~~~~s 259 (318)
T 4ggc_A 251 HYKELISGH 259 (318)
T ss_dssp TTTEEEEEE
T ss_pred cccceEEEE
Confidence 999888775
No 138
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=87.51 E-value=29 Score=39.25 Aligned_cols=104 Identities=15% Similarity=0.074 Sum_probs=61.8
Q ss_pred ECCeEEEEEeeccceeEEe-eecc---CceeEEEEeccCCCCCCCCccccCcEEEEEEecCCeEEEEeCCCcceEE-eec
Q psy7977 323 TGCDVYYLEVHGSEIKQLA-HRAL---EYEVACLDISPLSNEETSSEPAKAQLAAVGLWTDISARLLSLPSLEEVC-KEP 397 (1225)
Q Consensus 323 sgg~Lv~feid~~~L~ev~-~~~l---~~eIScLai~~~~~~~~~~~~~~s~~laVG~w~d~tv~IlsL~~Le~v~-~~~ 397 (1225)
.++++.+..++.++..... ...+ ...|.+++.++..... .+...+++|-|.. |++|+||++.+-..+. ...
T Consensus 109 ~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~---~~~d~~~las~s~-D~tv~~Wd~~~~~~~~~~~~ 184 (393)
T 4gq1_A 109 QDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSAD---NRLAEQVIASVGD-DCTLIIWRLTDEGPILAGYP 184 (393)
T ss_dssp TTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTT---CSEEEEEEEEEET-TSEEEEEEEETTEEEEEEEE
T ss_pred CCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccc---cCCCCCEEEEEEC-CCeEEEEECCCCceeeeecC
Confidence 4677888877655433322 1222 4689999997631100 0023467777776 9999999996533322 223
Q ss_pred CCCCCCcccEEEEeeCCeeEEEEEECCCcEEEEEEc
Q psy7977 398 LGGEIIPRSILMTCFEGHCYLLVALGDGSMFYFSLD 433 (1225)
Q Consensus 398 L~~~~~P~SIll~~l~~~~~LlVGl~nG~L~~y~ld 433 (1225)
.. ....++++.. .+..+|..|..||.+..|.+.
T Consensus 185 ~~--~~v~~v~~~p-~~~~~l~~~~~d~~v~~wd~~ 217 (393)
T 4gq1_A 185 LS--SPGISVQFRP-SNPNQLIVGERNGNIRIFDWT 217 (393)
T ss_dssp CS--SCEEEEEEET-TEEEEEEEEETTSEEEEEETT
T ss_pred CC--CCcEEEEECC-CCCceEEecCCCCEEEEEECC
Confidence 31 2233444332 124578999999999998764
No 139
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=87.45 E-value=40 Score=37.48 Aligned_cols=117 Identities=10% Similarity=0.002 Sum_probs=69.1
Q ss_pred CCcEEEEEec--CCEEEEE-ECCe-EEEEEeecccee-EEeeeccCceeEEEEeccCCCCCCCCccccCcEEEEEEecCC
Q psy7977 306 GKSISVVSCN--KNQVLCA-TGCD-VYYLEVHGSEIK-QLAHRALEYEVACLDISPLSNEETSSEPAKAQLAAVGLWTDI 380 (1225)
Q Consensus 306 g~~Iv~As~n--~~~VlVa-sgg~-Lv~feid~~~L~-ev~~~~l~~eIScLai~~~~~~~~~~~~~~s~~laVG~w~d~ 380 (1225)
...|.+.+.+ +.+++.+ .++. +.++++..++.. ....-.-...|.|++..+. ..+++.|.. |+
T Consensus 195 ~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~-----------~~~l~s~s~-d~ 262 (355)
T 3vu4_A 195 TNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTD-----------GSKLAVVSD-KW 262 (355)
T ss_dssp SSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTT-----------SCEEEEEET-TC
T ss_pred CCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCC-----------CCEEEEEEC-CC
Confidence 3467777775 3445545 5787 888888755332 2221114578999998762 467888887 99
Q ss_pred eEEEEeCCCcc--eEEe------------------ecCCCCCCcccEEEEeeCCeeEEEEEECCCcEEEEEEcC
Q psy7977 381 SARLLSLPSLE--EVCK------------------EPLGGEIIPRSILMTCFEGHCYLLVALGDGSMFYFSLDP 434 (1225)
Q Consensus 381 tv~IlsL~~Le--~v~~------------------~~L~~~~~P~SIll~~l~~~~~LlVGl~nG~L~~y~ld~ 434 (1225)
+|+||++..-. .... ..++....+..-.++--++..+|++|..||.+..|.+..
T Consensus 263 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~ 336 (355)
T 3vu4_A 263 TLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVF 336 (355)
T ss_dssp EEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEE
T ss_pred EEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEc
Confidence 99999996421 1100 001100000011122123457899999999999998754
No 140
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=87.10 E-value=39 Score=37.00 Aligned_cols=269 Identities=11% Similarity=0.066 Sum_probs=127.8
Q ss_pred eeEEEecCCeEEEEeecCCeEEEEEeeCCCCCCCceEEEeeee---ccccceeeEEeeccccCCccEEEEEecCCCccEE
Q psy7977 123 ECLTYLDNGVVFVGSRLGDSQLVKLNRSPDENGTYVSVMESFT---NLAPIIDMVVVDLERQGQGQLVTCSGGFKEGSLR 199 (1225)
Q Consensus 123 SsL~~L~~g~LFvGS~~GDS~L~~i~~~~ddd~~~l~v~d~l~---NlgPI~D~~v~d~~~~~~~qLva~sG~g~~GsLr 199 (1225)
.++..- .++|..||..|.=.++.+.... ......+. .-++|.++.+-. ..+++++++ .+|.++
T Consensus 18 ~~~~~s-~~~las~~~D~~i~lw~~~~~~------~~~~~~~~~~~h~~~v~~v~~sp-----~~~~las~s--~D~~v~ 83 (330)
T 2hes_X 18 WSFDFS-QGILATGSTDRKIKLVSVKYDD------FTLIDVLDETAHKKAIRSVAWRP-----HTSLLAAGS--FDSTVS 83 (330)
T ss_dssp EEEEEE-TTEEEEEESSSCEEEEECSSSC------CEEEEEECTTCCCSCEEEEEECT-----TSSEEEEEE--TTSCEE
T ss_pred eeeccC-CCEEEEEcCCCEEEEEEecCCC------eEEEEEEecCCccCCEEEEEECC-----CCCEEEEEe--CCCcEE
Confidence 344433 3366667665555555543321 34444552 356888887643 234444443 468888
Q ss_pred EEeecc------eeeEEEEeeCCC-cceEeEeeeCCCCCCccEEEEEcCCce-EEEEEc-C-ceeee---ec-------c
Q psy7977 200 IIRNGI------GIEEHACIDLPG-IKGIWALSIGSPKNLDNTLVLSFVGHT-RVLTLS-G-AEVEE---TE-------M 259 (1225)
Q Consensus 200 ilR~GI------~~~~~~s~eLpg-v~~iWtl~~~~~~~~d~yLVlSf~~~T-~Vl~i~-g-e~veE---v~-------~ 259 (1225)
+....- ..+.+.. +.+ -..++.+.... ...||+....+.+ +++.+. + +..+. .. .
T Consensus 84 iw~~~~~~~~~~~~~~~~~--~~~h~~~V~~v~~sp---~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~ 158 (330)
T 2hes_X 84 IWAKEESADRTFEMDLLAI--IEGHENEVKGVAWSN---DGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKH 158 (330)
T ss_dssp EEEC-------CCCEEEEE--EC----CEEEEEECT---TSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEE
T ss_pred EEEcccCcCccccceeEEE--EcCCCCcEEEEEECC---CCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEE
Confidence 885421 1122222 222 23566666543 2457776555554 455552 1 11111 11 1
Q ss_pred CCcccccCeEEEEeeCCCeEEEEccCcEEEEecCCc--ceeeeecCCCCCcEEEEEecCC----EEEEE-ECCeEEEEEe
Q psy7977 260 GGFTSDQQTFYCGNVDPRTVLQVTPSAAILISTESK--ARVSSWEPPNGKSISVVSCNKN----QVLCA-TGCDVYYLEV 332 (1225)
Q Consensus 260 sgF~~~~~TL~ag~l~~~~iVQVT~~~IRli~~~~~--~~i~eW~~p~g~~Iv~As~n~~----~VlVa-sgg~Lv~fei 332 (1225)
-.|..+...|+.+.. ...||+.+.... +.+..... ....|.+.+.+.. +++.+ .++.|.++++
T Consensus 159 v~~~p~~~~l~s~s~---------D~~i~iW~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~ 228 (330)
T 2hes_X 159 VIWHPSEALLASSSY---------DDTVRIWKDYDDDWECVAVLNG-HEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKY 228 (330)
T ss_dssp EEECSSSSEEEEEET---------TSCEEEEEEETTEEEEEEEECC-CSSCEEEEEECCSSSSCEEEEEETTSCEEEEEE
T ss_pred EEECCCCCEEEEEcC---------CCeEEEEECCCCCeeEEEEccC-CCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEe
Confidence 112223333333332 233555543221 22233322 2235777666543 33334 5788888887
Q ss_pred eccc------eeEEeeec--cCceeEEEEeccCCCCCCCCccccCcEEEEEEecCCeEEEEeCCCc--ceEEeecCCCCC
Q psy7977 333 HGSE------IKQLAHRA--LEYEVACLDISPLSNEETSSEPAKAQLAAVGLWTDISARLLSLPSL--EEVCKEPLGGEI 402 (1225)
Q Consensus 333 d~~~------L~ev~~~~--l~~eIScLai~~~~~~~~~~~~~~s~~laVG~w~d~tv~IlsL~~L--e~v~~~~L~~~~ 402 (1225)
.... ........ -...|.|++..+ ..+++.|.. |++|+||+..+- +.+.........
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~------------~~~l~s~~~-dg~v~iw~~~~~~~~~~~~~~~~h~~ 295 (330)
T 2hes_X 229 MGDDEDDQQEWVCEAILPDVHKRQVYNVAWGF------------NGLIASVGA-DGVLAVYEEVDGEWKVFAKRALCHGV 295 (330)
T ss_dssp EEECTTSCEEEEEEEECCSCCSSCEEEEEECT------------TSCEEEEET-TSCEEEEEEETTEEEEEEEESCTTTT
T ss_pred cCCCccccceeEEeeecccccccceEEEEEcC------------CCEEEEEeC-CCEEEEEEcCCCceEEEecccccccc
Confidence 5421 11111111 345788888752 235777776 999999998643 222222111011
Q ss_pred -CcccEEEEeeCCeeEEEEEECCCcEEEEEEc
Q psy7977 403 -IPRSILMTCFEGHCYLLVALGDGSMFYFSLD 433 (1225)
Q Consensus 403 -~P~SIll~~l~~~~~LlVGl~nG~L~~y~ld 433 (1225)
...++.+....+..+|..|-.||.+..+.+.
T Consensus 296 ~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~ 327 (330)
T 2hes_X 296 YEINVVKWLELNGKTILATGGDDGIVNFWSLE 327 (330)
T ss_dssp SCEEEEEEC-----CCEEEEETTSEEEEEEC-
T ss_pred ceEEEEEEecCCCceEEEEecCCCcEEEEEec
Confidence 1123333322234578889999999888764
No 141
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=86.59 E-value=38 Score=36.66 Aligned_cols=172 Identities=12% Similarity=0.059 Sum_probs=95.8
Q ss_pred EEEEEECCCCcEEEEEECCCCCceEEEEEEEecCCCCeEEEEEeeeeCCCCCCCcceEEEEEEEeCCcEEEEEEEEec--
Q psy7977 1006 NLLIIDQNTFEILHAHQLFPGEYALSLISSKFGEDPNTYFVLGTAVVHPEENEPKQGRIIIFHYDDGKLQQIAEKEIK-- 1083 (1225)
Q Consensus 1006 ~irlvdp~t~~~i~~~eL~~nE~~~si~~v~~~~~~~~~lvVGTa~~~~eed~~~~GrI~vf~i~~~kL~lv~~~ev~-- 1083 (1225)
.|+.+|+ +.+.+..+.......+.+ +.+..++ .++++... ..++++.|+- ++++ +.+..+.
T Consensus 57 ~V~~~d~-~G~~~W~~~~~~~~~~~~---~~~~~dG-~~lv~~~~---------~~~~v~~vd~-~Gk~--l~~~~~~~~ 119 (276)
T 3no2_A 57 GAKMITR-DGRELWNIAAPAGCEMQT---ARILPDG-NALVAWCG---------HPSTILEVNM-KGEV--LSKTEFETG 119 (276)
T ss_dssp EEEEECT-TSCEEEEEECCTTCEEEE---EEECTTS-CEEEEEES---------TTEEEEEECT-TSCE--EEEEEECCS
T ss_pred CEEEECC-CCCEEEEEcCCCCccccc---cEECCCC-CEEEEecC---------CCCEEEEEeC-CCCE--EEEEeccCC
Confidence 5999999 899999998854333333 3333333 45554432 1456666543 3442 2222222
Q ss_pred --C---ceeeecc-ccCeEEEEe--CCEEEEEEcCCCceee-eeecccceeEEEEEEEECCEEEEeeccccEEEEEEecC
Q psy7977 1084 --G---ACYSMCE-FNGKLLASI--NSTVRLFEWTNEKELR-LECSHFNNIIALFLKVKGDFILVGDLMRSLTLLQYKTM 1154 (1225)
Q Consensus 1084 --G---~v~al~~-f~G~LLa~v--g~~l~vy~l~~~~~L~-~e~~~~~~~i~~~l~~~g~~IlvGD~~kSv~~l~y~~~ 1154 (1225)
+ .+..++. -+|.++++. +.+|..|+.. .+.+. ......+.. ... ..++.++|++...+ .++.|+++
T Consensus 120 ~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~~~~~~--~~~-~~~g~~~v~~~~~~-~v~~~d~~ 194 (276)
T 3no2_A 120 IERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLLNSVKLSGTPFS--SAF-LDNGDCLVACGDAH-CFVQLNLE 194 (276)
T ss_dssp CSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECSSCCCE--EEE-CTTSCEEEECBTTS-EEEEECTT
T ss_pred CCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCEEEEEECCCCccc--eeE-cCCCCEEEEeCCCC-eEEEEeCc
Confidence 2 1222222 267777664 5688888876 34333 322222222 112 22344556565554 47889988
Q ss_pred -CCeEEEEecc-C---CCceeEEEEeeeCCcEEEEcCCC---------cEEEEEeCCCC
Q psy7977 1155 -EGSFEEISRD-Y---NPNWMTSIEILDDELFLGAENSY---------NLFICQKDSAA 1199 (1225)
Q Consensus 1155 -~~~L~~~arD-~---~~~wvta~~~Ld~dt~l~aD~~g---------Nl~vl~~~~~~ 1199 (1225)
...+-.+.+. . .-.|++++..++++.+++++-.| +..+++.+++.
T Consensus 195 tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~~g 253 (276)
T 3no2_A 195 SNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNWQGHDREAGKGKHPQLVEIDSEG 253 (276)
T ss_dssp TCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEECTTCTTGGGSCCCSEEEECTTS
T ss_pred CCcEEEEecCCCCCCccccccccceEcCCCCEEEEeccCccccccccCCceEEEECCCC
Confidence 4555556542 1 24678899999888887877433 44677777653
No 142
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=86.50 E-value=20 Score=38.84 Aligned_cols=167 Identities=16% Similarity=0.085 Sum_probs=89.5
Q ss_pred EEEEEEECCCCcEEEEEECCCCCceEEEEEEEecCCCCeEEEEEeeeeCCCCCCCcceEEEEEEEeCCcEEEEEEEEec-
Q psy7977 1005 HNLLIIDQNTFEILHAHQLFPGEYALSLISSKFGEDPNTYFVLGTAVVHPEENEPKQGRIIIFHYDDGKLQQIAEKEIK- 1083 (1225)
Q Consensus 1005 s~irlvdp~t~~~i~~~eL~~nE~~~si~~v~~~~~~~~~lvVGTa~~~~eed~~~~GrI~vf~i~~~kL~lv~~~ev~- 1083 (1225)
..|.++|+.|.+.+.++..+..+.+.++. +..++ .+++ +. .++++.|+. ++++ +.+.+..
T Consensus 15 ~~v~~~d~~tG~~~w~~~~~~~~~~~~~~---~~pdG-~ilv--s~----------~~~V~~~d~-~G~~--~W~~~~~~ 75 (276)
T 3no2_A 15 NKIAIINKDTKEIVWEYPLEKGWECNSVA---ATKAG-EILF--SY----------SKGAKMITR-DGRE--LWNIAAPA 75 (276)
T ss_dssp SEEEEEETTTTEEEEEEECCTTCCCCEEE---ECTTS-CEEE--EC----------BSEEEEECT-TSCE--EEEEECCT
T ss_pred CEEEEEECCCCeEEEEeCCCccCCCcCeE---ECCCC-CEEE--eC----------CCCEEEECC-CCCE--EEEEcCCC
Confidence 58999999999999999987644455543 23333 3444 21 124555544 3432 2222221
Q ss_pred -Cceeeeccc-cCeEEEEeCC-EEEEEEcCCCceee--ee--e---cc--cceeEEEEEEEECCEEEEeeccccEEEEEE
Q psy7977 1084 -GACYSMCEF-NGKLLASINS-TVRLFEWTNEKELR--LE--C---SH--FNNIIALFLKVKGDFILVGDLMRSLTLLQY 1151 (1225)
Q Consensus 1084 -G~v~al~~f-~G~LLa~vg~-~l~vy~l~~~~~L~--~e--~---~~--~~~~i~~~l~~~g~~IlvGD~~kSv~~l~y 1151 (1225)
..+.+.... +|+++++-.. .-+++.+..+..+. .. . .. .+.. ......|++ ++.|...+. +..|
T Consensus 76 ~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~~Gk~l~~~~~~~~~~~~~~~~~~--v~~~~~G~~-lv~~~~~~~-v~~~ 151 (276)
T 3no2_A 76 GCEMQTARILPDGNALVAWCGHPSTILEVNMKGEVLSKTEFETGIERPHAQFRQ--INKNKKGNY-LVPLFATSE-VREI 151 (276)
T ss_dssp TCEEEEEEECTTSCEEEEEESTTEEEEEECTTSCEEEEEEECCSCSSGGGSCSC--CEECTTSCE-EEEETTTTE-EEEE
T ss_pred CccccccEECCCCCEEEEecCCCCEEEEEeCCCCEEEEEeccCCCCcccccccC--ceECCCCCE-EEEecCCCE-EEEE
Confidence 234443333 6877776443 55666665444332 11 0 00 1111 122234554 456665553 6778
Q ss_pred ecCCCeEEEEeccCCCceeEEEEeeeCCcEEEEcCCCcEEEEEeCCC
Q psy7977 1152 KTMEGSFEEISRDYNPNWMTSIEILDDELFLGAENSYNLFICQKDSA 1198 (1225)
Q Consensus 1152 ~~~~~~L~~~arD~~~~wvta~~~Ld~dt~l~aD~~gNl~vl~~~~~ 1198 (1225)
+++...+-.+... .+..++.++.++.+++++..++ .|..++++
T Consensus 152 d~~G~~~w~~~~~---~~~~~~~~~~~g~~~v~~~~~~-~v~~~d~~ 194 (276)
T 3no2_A 152 APNGQLLNSVKLS---GTPFSSAFLDNGDCLVACGDAH-CFVQLNLE 194 (276)
T ss_dssp CTTSCEEEEEECS---SCCCEEEECTTSCEEEECBTTS-EEEEECTT
T ss_pred CCCCCEEEEEECC---CCccceeEcCCCCEEEEeCCCC-eEEEEeCc
Confidence 8875555555543 3445667777777777766665 35566655
No 143
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=84.69 E-value=68 Score=37.56 Aligned_cols=246 Identities=8% Similarity=-0.032 Sum_probs=118.3
Q ss_pred CcEEEEecCCcceeeeecCCCCCcEEEEEecCCEEEEEE-----------CCeEEEEEeeccceeEEeeeccC-------
Q psy7977 285 SAAILISTESKARVSSWEPPNGKSISVVSCNKNQVLCAT-----------GCDVYYLEVHGSEIKQLAHRALE------- 346 (1225)
Q Consensus 285 ~~IRli~~~~~~~i~eW~~p~g~~Iv~As~n~~~VlVas-----------gg~Lv~feid~~~L~ev~~~~l~------- 346 (1225)
+.|.+||..+.+.+..+..... .=...+-.+.++.+++ ++.|..++ ...++.+....++
T Consensus 99 ~~VsVID~~t~~vv~~I~vG~~-Pgia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD--~~t~~vv~~I~v~g~~r~~~ 175 (426)
T 3c75_H 99 TQQFVIDGSTGRILGMTDGGFL-PHPVAAEDGSFFAQASTVFERIARGKRTDYVEVFD--PVTFLPIADIELPDAPRFLV 175 (426)
T ss_dssp EEEEEEETTTTEEEEEEEECSS-CEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEEC--TTTCCEEEEEEETTCCCCCB
T ss_pred CeEEEEECCCCEEEEEEECCCC-CceEECCCCCEEEEEeccccccccCCCCCEEEEEE--CCCCcEEEEEECCCcccccc
Confidence 4678888887666666654322 2123333455666652 23344443 3233333333332
Q ss_pred -ceeEEEEeccCCCCCCCCccccCcEEEEEEec-CCeEEEEeCCCcceEEeecCCCCCCcccEEEEeeCCeeEEEEEECC
Q psy7977 347 -YEVACLDISPLSNEETSSEPAKAQLAAVGLWT-DISARLLSLPSLEEVCKEPLGGEIIPRSILMTCFEGHCYLLVALGD 424 (1225)
Q Consensus 347 -~eIScLai~~~~~~~~~~~~~~s~~laVG~w~-d~tv~IlsL~~Le~v~~~~L~~~~~P~SIll~~l~~~~~LlVGl~n 424 (1225)
...-.+++++ ..+++.|+-+. +++|.++++.+.+.+..-.++. ...+..-+. ..++.-..|
T Consensus 176 g~~P~~~~~sp-----------DGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g-----~~~~~p~g~-~~~v~~~~d 238 (426)
T 3c75_H 176 GTYQWMNALTP-----------DNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPD-----CYHIFPASP-TVFYMNCRD 238 (426)
T ss_dssp SCCGGGSEECT-----------TSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS-----EEEEEEEET-TEEEEEETT
T ss_pred CCCcceEEEcC-----------CCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCC-----ceeeccCCC-cEEEEEcCC
Confidence 1122233322 25688888764 6899999999888776655531 222222222 233455678
Q ss_pred CcEEEEEEcCCCCccccce--eeeecCccceEEE-EeeCCceEEEEecCCc--EEEEEcCCeeEEe-eccc---ccc-cc
Q psy7977 425 GSMFYFSLDPASGRLTDKK--KVTLGTQPTVLKT-FRSLSTTNVFACSDRP--TVIYSSNHKLVFS-NVNL---RQV-NH 494 (1225)
Q Consensus 425 G~L~~y~ld~~sg~Ls~~k--~~~LG~~pV~L~~-~~~~g~~~Vfa~sdrP--~liyss~g~l~~~-pl~~---~~v-~~ 494 (1225)
|.++.... .+++...+. ..-.+.+|+.... +...+. .++..+... +++....+...+. +... ..+ ..
T Consensus 239 G~~~~V~~--~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~-~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g 315 (426)
T 3c75_H 239 GSLARVDF--ADGETKVTNTEVFHTEDELLINHPAFSLRSG-RLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADD 315 (426)
T ss_dssp SSEEEEEC--CTTCCEEEECCCCSCTTSCBCSCCEECTTTC-EEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGT
T ss_pred CCEEEEEC--CCCcEEEEeeeeeccCCCceeeEeeecCCCC-EEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccc
Confidence 88877766 334433221 1223444533221 111222 222222222 2222222222211 1000 000 00
Q ss_pred cccCCC---CCCC-CeEEEEeC----------CeEEEEEEcCCCCeeeEEEeCCCcccEEEEecCCC-EEEEEE
Q psy7977 495 MCSLNA---ESYP-DSLALATD----------STFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQ-TFGVIT 553 (1225)
Q Consensus 495 ~s~F~s---e~~p-~glv~vs~----------~~LrI~~i~~~~~l~ir~IpLg~TprrIay~p~s~-~~vV~t 553 (1225)
..|... ..-| ..-+|+.. ..=.+.-||....-.+++||++..|..|+++|..+ .+++..
T Consensus 316 ~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~~P~gia~spDg~~~lyv~n 389 (426)
T 3c75_H 316 WRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGHEIDSINVSQDAEPLLYALS 389 (426)
T ss_dssp EEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECCSSSCEEEEEE
T ss_pred cccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECCCCcCeEEEccCCCEEEEEEc
Confidence 011000 0001 12333321 12346666766667889999999999999999999 666654
No 144
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=84.02 E-value=34 Score=41.53 Aligned_cols=177 Identities=12% Similarity=0.099 Sum_probs=101.6
Q ss_pred CcEEEEEEecCCeEEEEeCCCcceEEeecCCCCCCcccEEEEeeCCeeEEEEEECCCcEEEEEEcCCCCccccceeeeec
Q psy7977 369 AQLAAVGLWTDISARLLSLPSLEEVCKEPLGGEIIPRSILMTCFEGHCYLLVALGDGSMFYFSLDPASGRLTDKKKVTLG 448 (1225)
Q Consensus 369 s~~laVG~w~d~tv~IlsL~~Le~v~~~~L~~~~~P~SIll~~l~~~~~LlVGl~nG~L~~y~ld~~sg~Ls~~k~~~LG 448 (1225)
.+.++|....+++|.+++..+.+.+....++ ..|+.+.+.. +..||+++.++|.+..|.+...++++ .+....|
T Consensus 166 ~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g--~~p~~v~~Sp--DGr~lyv~~~dg~V~viD~~~~t~~~--v~~i~~G 239 (567)
T 1qks_A 166 ENLFSVTLRDAGQIALIDGSTYEIKTVLDTG--YAVHISRLSA--SGRYLFVIGRDGKVNMIDLWMKEPTT--VAEIKIG 239 (567)
T ss_dssp GGEEEEEETTTTEEEEEETTTCCEEEEEECS--SCEEEEEECT--TSCEEEEEETTSEEEEEETTSSSCCE--EEEEECC
T ss_pred CceEEEEeCCCCeEEEEECCCCeEEEEEeCC--CCccceEECC--CCCEEEEEcCCCeEEEEECCCCCCcE--eEEEecC
Confidence 4577888888999999999887777655553 4566555442 45688899999988777653223332 2344456
Q ss_pred CccceEEEEe----eCCceEEEEecCCc-E-EEEEc-C-CeeEEeeccccccc--------ccccC-CCCCCCCeEEEEe
Q psy7977 449 TQPTVLKTFR----SLSTTNVFACSDRP-T-VIYSS-N-HKLVFSNVNLRQVN--------HMCSL-NAESYPDSLALAT 511 (1225)
Q Consensus 449 ~~pV~L~~~~----~~g~~~Vfa~sdrP-~-liyss-~-g~l~~~pl~~~~v~--------~~s~F-~se~~p~glv~vs 511 (1225)
..|..+. +. .+| ..+++.+..| . .++.. . ..++..++....+. .++.+ .+..-+..++-+.
T Consensus 240 ~~P~~ia-~s~~~~pDG-k~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~ 317 (567)
T 1qks_A 240 SEARSIE-TSKMEGWED-KYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVK 317 (567)
T ss_dssp SEEEEEE-ECCSTTCTT-TEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEET
T ss_pred CCCceeE-EccccCCCC-CEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEec
Confidence 6664432 22 133 3444444332 2 23321 1 12333333221111 11111 1112233333332
Q ss_pred C-CeEEEEEEcCCCCeeeEEEeCCCcccEEEEecCCCEEEEEE
Q psy7977 512 D-STFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVIT 553 (1225)
Q Consensus 512 ~-~~LrI~~i~~~~~l~ir~IpLg~TprrIay~p~s~~~vV~t 553 (1225)
+ +.+.+........+.+.+|+.+..|+-+.++|..+.|+++.
T Consensus 318 ~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~ 360 (567)
T 1qks_A 318 ETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAA 360 (567)
T ss_dssp TTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEE
T ss_pred CCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEe
Confidence 2 55665555454567889999999999999999999888886
No 145
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=83.64 E-value=45 Score=34.68 Aligned_cols=227 Identities=15% Similarity=0.161 Sum_probs=108.4
Q ss_pred cceeEEEecCCeEEEEeecCCeEEEEEeeCCCCCCCceEEEeeeeccccceeeEEeeccccCCccEEEEEecCCCccEEE
Q psy7977 121 IPECLTYLDNGVVFVGSRLGDSQLVKLNRSPDENGTYVSVMESFTNLAPIIDMVVVDLERQGQGQLVTCSGGFKEGSLRI 200 (1225)
Q Consensus 121 ~~SsL~~L~~g~LFvGS~~GDS~L~~i~~~~ddd~~~l~v~d~l~NlgPI~D~~v~d~~~~~~~qLva~sG~g~~GsLri 200 (1225)
.|.+++.-.+|.+|+.+..+++.++++..... ..... .........++++.. ..+|+++.. ++.+..
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~----~~~~~-~~~~~~~p~~i~~~~-----~g~l~v~~~---~~~i~~ 91 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGST----GTTVL-PFNGLYQPQGLAVDG-----AGTVYVTDF---NNRVVT 91 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC---------EEC-CCCSCCSCCCEEECT-----TCCEEEEET---TTEEEE
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCc----ccceE-eeCCcCCcceeEECC-----CCCEEEEcC---CCEEEE
Confidence 78888888888999955556778888865321 11111 122333345555522 245887775 566776
Q ss_pred EeecceeeEEEEeeCCCcceEeEeeeCCCCCCccEEEEEcCCceEEEEEcCceeeee--ccCCc--------ccccCeEE
Q psy7977 201 IRNGIGIEEHACIDLPGIKGIWALSIGSPKNLDNTLVLSFVGHTRVLTLSGAEVEET--EMGGF--------TSDQQTFY 270 (1225)
Q Consensus 201 lR~GI~~~~~~s~eLpgv~~iWtl~~~~~~~~d~yLVlSf~~~T~Vl~i~ge~veEv--~~sgF--------~~~~~TL~ 270 (1225)
+...=.. ...+...+....+.+.... +..|.++......|+.++....... ...++ ..+. .|+
T Consensus 92 ~d~~~~~--~~~~~~~~~~~p~~i~~~~----~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g-~l~ 164 (270)
T 1rwi_B 92 LAAGSNN--QTVLPFDGLNYPEGLAVDT----QGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSG-NVY 164 (270)
T ss_dssp ECTTCSC--CEECCCCSCSSEEEEEECT----TCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTC-CEE
T ss_pred EeCCCce--EeeeecCCcCCCcceEECC----CCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCC-CEE
Confidence 6532211 1122223333445554432 1224454433445555543221111 11111 1111 234
Q ss_pred EEeeCCCeEEEEccCcEEEEecCCcceeeeecCCCCCcEEEEEec-CCEEEEEE--CCeEEEEEeeccceeEEeeeccCc
Q psy7977 271 CGNVDPRTVLQVTPSAAILISTESKARVSSWEPPNGKSISVVSCN-KNQVLCAT--GCDVYYLEVHGSEIKQLAHRALEY 347 (1225)
Q Consensus 271 ag~l~~~~iVQVT~~~IRli~~~~~~~i~eW~~p~g~~Iv~As~n-~~~VlVas--gg~Lv~feid~~~L~ev~~~~l~~ 347 (1225)
++...+ +.|..++.+..... .........+...++. +..+.+++ ++.|..+..+...........+ .
T Consensus 165 v~~~~~--------~~i~~~~~~~~~~~-~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~-~ 234 (270)
T 1rwi_B 165 VTDTDN--------NRVVKLEAESNNQV-VLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGL-N 234 (270)
T ss_dssp EEEGGG--------TEEEEECTTTCCEE-ECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSC-S
T ss_pred EEECCC--------CEEEEEecCCCceE-eecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCC-C
Confidence 333322 34556665532211 1111111234444443 34777773 5678777654322221111111 3
Q ss_pred eeEEEEeccCCCCCCCCccccCcEEEEEEecCCeEEEEeCCC
Q psy7977 348 EVACLDISPLSNEETSSEPAKAQLAAVGLWTDISARLLSLPS 389 (1225)
Q Consensus 348 eIScLai~~~~~~~~~~~~~~s~~laVG~w~d~tv~IlsL~~ 389 (1225)
.+.++++.+- .+ +.|+.+.+++|++|.++.
T Consensus 235 ~p~~i~~~~~-----------g~-l~v~~~~~~~v~~~~~~~ 264 (270)
T 1rwi_B 235 TPLAVAVDSD-----------RT-VYVADRGNDRVVKLTSLE 264 (270)
T ss_dssp CEEEEEECTT-----------CC-EEEEEGGGTEEEEECCCG
T ss_pred CceeEEECCC-----------CC-EEEEECCCCEEEEEcCCC
Confidence 5677777531 23 777777799999999864
No 146
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=82.93 E-value=63 Score=35.85 Aligned_cols=172 Identities=11% Similarity=0.109 Sum_probs=91.1
Q ss_pred EECCCCcE--EEEEECCCCCceEEEEEEEecCCCCeEEEEEeeeeCCCCCCCcceEEEEEEEe-CCcEEEEEEEEecCce
Q psy7977 1010 IDQNTFEI--LHAHQLFPGEYALSLISSKFGEDPNTYFVLGTAVVHPEENEPKQGRIIIFHYD-DGKLQQIAEKEIKGAC 1086 (1225)
Q Consensus 1010 vdp~t~~~--i~~~eL~~nE~~~si~~v~~~~~~~~~lvVGTa~~~~eed~~~~GrI~vf~i~-~~kL~lv~~~ev~G~v 1086 (1225)
+|+.+.+. +...+....+.+.++ .|..++ .+++++.. + .|.+|++. ++++..+...+..|.+
T Consensus 21 ~d~~~g~l~~~~~~~~~~~~~~~~~---a~spdg-~~l~~~~~------~-----~v~~~~~~~~g~~~~~~~~~~~g~~ 85 (365)
T 1jof_A 21 FDDEKLTCKLIKRTEIPQDEPISWM---TFDHER-KNIYGAAM------K-----KWSSFAVKSPTEIVHEASHPIGGHP 85 (365)
T ss_dssp EETTTTEEEEEEEEECCTTCCCSEE---EECTTS-SEEEEEEB------T-----EEEEEEEEETTEEEEEEEEECCSSG
T ss_pred EECCCCCEEEeeEEccCCCCCCcEE---EECCCC-CEEEEEcc------c-----eEEEEEECCCCCEEEeeEeecCCCC
Confidence 46666543 333333333445444 345444 34544431 2 79999998 7777655544445655
Q ss_pred eeeccc-cCe--EEEE---------------eCCEEEEEEcCCCceee--eee---cccceeEEEEEEEECCEEEEeecc
Q psy7977 1087 YSMCEF-NGK--LLAS---------------INSTVRLFEWTNEKELR--LEC---SHFNNIIALFLKVKGDFILVGDLM 1143 (1225)
Q Consensus 1087 ~al~~f-~G~--LLa~---------------vg~~l~vy~l~~~~~L~--~e~---~~~~~~i~~~l~~~g~~IlvGD~~ 1143 (1225)
.+++-- +|+ +++. -+.++.+|++..+..+. ... ........+.+...|.+++++|.-
T Consensus 86 ~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~ 165 (365)
T 1jof_A 86 RANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLT 165 (365)
T ss_dssp GGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETT
T ss_pred ccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCC
Confidence 554321 577 3332 24579999997544332 111 011111112233356789999864
Q ss_pred -ccEEEEEEecCCCeEEEEeccC---CCceeEEEEeeeCC-cEEEE-cCCCcEEEEEeCC
Q psy7977 1144 -RSLTLLQYKTMEGSFEEISRDY---NPNWMTSIEILDDE-LFLGA-ENSYNLFICQKDS 1197 (1225)
Q Consensus 1144 -kSv~~l~y~~~~~~L~~~arD~---~~~wvta~~~Ld~d-t~l~a-D~~gNl~vl~~~~ 1197 (1225)
..|+++..++ .+++..+..=. ...+...+.+=.++ .++++ ...+.+.++++++
T Consensus 166 ~~~v~~~~~~~-~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~ 224 (365)
T 1jof_A 166 ANKLWTHRKLA-SGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDP 224 (365)
T ss_dssp TTEEEEEEECT-TSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred CCEEEEEEECC-CCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeC
Confidence 4666655543 56665543211 12345566665455 33344 4567888888865
No 147
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=82.74 E-value=38 Score=36.46 Aligned_cols=109 Identities=17% Similarity=0.113 Sum_probs=61.3
Q ss_pred EEEEEEECCCCcEEEEEECCCC--CceEEEEEEEecCCCCeEEEEEeee-eCCC-CCCCcceEEEEEEEeCCc-EEEEEE
Q psy7977 1005 HNLLIIDQNTFEILHAHQLFPG--EYALSLISSKFGEDPNTYFVLGTAV-VHPE-ENEPKQGRIIIFHYDDGK-LQQIAE 1079 (1225)
Q Consensus 1005 s~irlvdp~t~~~i~~~eL~~n--E~~~si~~v~~~~~~~~~lvVGTa~-~~~e-ed~~~~GrI~vf~i~~~k-L~lv~~ 1079 (1225)
+.|.++|..+.+.+..+++... +.......+.|..++ .+++++..- .... +.....+.|++|++..++ .+.+..
T Consensus 65 ~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg-~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~ 143 (349)
T 1jmx_B 65 GDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDG-KEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRT 143 (349)
T ss_dssp TEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTS-SEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEE
T ss_pred CcEEEEeCCCCcEEEEEEcccccccccccccceEECCCC-CEEEEEcccccccccccccCCCeEEEEECCCccccceeee
Confidence 4799999999999988887542 111111223455444 455555532 1111 011124789999987642 233333
Q ss_pred EEecCceeeecc-ccCeEEEEeCCEEEEEEcCCCcee
Q psy7977 1080 KEIKGACYSMCE-FNGKLLASINSTVRLFEWTNEKEL 1115 (1225)
Q Consensus 1080 ~ev~G~v~al~~-f~G~LLa~vg~~l~vy~l~~~~~L 1115 (1225)
.+....+.+++- -+|+|++ .+..|++|+....+.+
T Consensus 144 ~~~~~~~~~~~~s~dg~l~~-~~~~i~~~d~~~~~~~ 179 (349)
T 1jmx_B 144 FPMPRQVYLMRAADDGSLYV-AGPDIYKMDVKTGKYT 179 (349)
T ss_dssp EECCSSCCCEEECTTSCEEE-ESSSEEEECTTTCCEE
T ss_pred ccCCCcccceeECCCCcEEE-ccCcEEEEeCCCCcee
Confidence 333345665542 2688555 5777999998765543
No 148
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=82.20 E-value=67 Score=35.64 Aligned_cols=190 Identities=9% Similarity=0.069 Sum_probs=104.2
Q ss_pred EEEEEEECC-CCcEE---EEEECCCCCceEEEEEEEecCCCCeEEEEEeeeeCCCCCCCcceEEEEEEEe-CCcEEEEEE
Q psy7977 1005 HNLLIIDQN-TFEIL---HAHQLFPGEYALSLISSKFGEDPNTYFVLGTAVVHPEENEPKQGRIIIFHYD-DGKLQQIAE 1079 (1225)
Q Consensus 1005 s~irlvdp~-t~~~i---~~~eL~~nE~~~si~~v~~~~~~~~~lvVGTa~~~~eed~~~~GrI~vf~i~-~~kL~lv~~ 1079 (1225)
+.+++++.. +.+.. ..+..+....+.++ .|..+++ +++|+. .+ .++|++|++. +++++.+..
T Consensus 119 g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~---~~spdG~-~l~~~~---~~------~~~v~~~~~~~~g~~~~~~~ 185 (365)
T 1jof_A 119 GYGNVFSVSETGKLEKNVQNYEYQENTGIHGM---VFDPTET-YLYSAD---LT------ANKLWTHRKLASGEVELVGS 185 (365)
T ss_dssp CEEEEEEECTTCCEEEEEEEEECCTTCCEEEE---EECTTSS-EEEEEE---TT------TTEEEEEEECTTSCEEEEEE
T ss_pred ceEEEEccCCCCcCcceEeeEEeCCCCcceEE---EECCCCC-EEEEEc---CC------CCEEEEEEECCCCCEEEeee
Confidence 456777654 34433 22222334455544 4555544 455442 11 3589999998 678876665
Q ss_pred EEe---cCceeeeccc--cCeEEE-Ee--CCEEEEEEcCC-Cceee-----eeec--cc-c-e-------eEEEEEE---
Q psy7977 1080 KEI---KGACYSMCEF--NGKLLA-SI--NSTVRLFEWTN-EKELR-----LECS--HF-N-N-------IIALFLK--- 1131 (1225)
Q Consensus 1080 ~ev---~G~v~al~~f--~G~LLa-~v--g~~l~vy~l~~-~~~L~-----~e~~--~~-~-~-------~i~~~l~--- 1131 (1225)
... ...|.+++ | +|+.|+ +- ++++.+|++.. ...+. .... .+ . . . +..+.
T Consensus 186 ~~~~~~g~~p~~~~-~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~i~~~s 263 (365)
T 1jof_A 186 VDAPDPGDHPRWVA-MHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLY-RADVCALT 263 (365)
T ss_dssp EECSSTTCCEEEEE-ECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSE-EEEEEEEC
T ss_pred EecCCCCCCCCEeE-ECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccc-cccEEEEC
Confidence 443 23476664 4 575443 32 47999998863 22221 1110 11 0 0 1 33343
Q ss_pred EECCEEEEeeccc------cEEEEEEecCCCeEEEEe-----ccCCCceeEEEEee--eCCcEEEEcC-CCcEEEEEeCC
Q psy7977 1132 VKGDFILVGDLMR------SLTLLQYKTMEGSFEEIS-----RDYNPNWMTSIEIL--DDELFLGAEN-SYNLFICQKDS 1197 (1225)
Q Consensus 1132 ~~g~~IlvGD~~k------Sv~~l~y~~~~~~L~~~a-----rD~~~~wvta~~~L--d~dt~l~aD~-~gNl~vl~~~~ 1197 (1225)
..|.++++++.-. ++.++..++ ..++..+. ....++|+. ...- |...+++++. .+++.+++.++
T Consensus 264 pdG~~l~v~~~~~~~~~~~~i~v~~~~~-~g~~~~~~~~~~~~~~~~~~~a-~sp~~~dg~~l~v~~~~~~~v~v~~~~~ 341 (365)
T 1jof_A 264 FSGKYMFASSRANKFELQGYIAGFKLRD-CGSIEKQLFLSPTPTSGGHSNA-VSPCPWSDEWMAITDDQEGWLEIYRWKD 341 (365)
T ss_dssp TTSSEEEEEEEESSTTSCCEEEEEEECT-TSCEEEEEEEEECSSCCTTCCC-EEECTTCTTEEEEECSSSCEEEEEEEET
T ss_pred CCCCEEEEECCCCCCCCCCeEEEEEECC-CCCEEEeeeeeecCCCCcccce-ecCCCcCCCEEEEEEcCCCeEEEEEEch
Confidence 4567899988654 677766653 45565421 223455542 1111 3456777775 48899999876
Q ss_pred CCCCccccceeEEEEEEEEeCCc
Q psy7977 1198 AATSDEDRTHLQEVGTVHLVGDG 1220 (1225)
Q Consensus 1198 ~~~~~~~~~rL~~~~~fhl~Ge~ 1220 (1225)
+ .|...+++.+ ++-
T Consensus 342 ~--------~l~~~~~~~~-~~p 355 (365)
T 1jof_A 342 E--------FLHRVARVRI-PEP 355 (365)
T ss_dssp T--------EEEEEEEEEC-CST
T ss_pred h--------hCceeeEEEc-CCC
Confidence 4 4556678888 664
No 149
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=82.04 E-value=60 Score=34.97 Aligned_cols=133 Identities=11% Similarity=0.133 Sum_probs=73.5
Q ss_pred EEEEEEECCCCcEEEEEECCCCCceEEEEEEEecCCCCeEEEEEeeeeCCCCCCCcceEEEEEEEeCCcEEEEEEEEec-
Q psy7977 1005 HNLLIIDQNTFEILHAHQLFPGEYALSLISSKFGEDPNTYFVLGTAVVHPEENEPKQGRIIIFHYDDGKLQQIAEKEIK- 1083 (1225)
Q Consensus 1005 s~irlvdp~t~~~i~~~eL~~nE~~~si~~v~~~~~~~~~lvVGTa~~~~eed~~~~GrI~vf~i~~~kL~lv~~~ev~- 1083 (1225)
..|..+|+.+.+. ..+.+. ..+.+++ +..+++ ++|++ .++|+.|+...++++.+...+..
T Consensus 35 ~~i~~~d~~~~~~-~~~~~~--~~~~~i~---~~~dG~--l~v~~-----------~~~l~~~d~~~g~~~~~~~~~~~~ 95 (297)
T 3g4e_A 35 KKVCRWDSFTKQV-QRVTMD--APVSSVA---LRQSGG--YVATI-----------GTKFCALNWKEQSAVVLATVDNDK 95 (297)
T ss_dssp TEEEEEETTTCCE-EEEECS--SCEEEEE---EBTTSS--EEEEE-----------TTEEEEEETTTTEEEEEEECCTTC
T ss_pred CEEEEEECCCCcE-EEEeCC--CceEEEE---ECCCCC--EEEEE-----------CCeEEEEECCCCcEEEEEecCCCC
Confidence 3678888887654 334443 4455543 444444 55664 13677777766777766654321
Q ss_pred --Cceeeec-cccCeEEEEe-C----------CEEEEEEcCCCceee--eeecccceeEEEEEEEECCEEEEeeccc-cE
Q psy7977 1084 --GACYSMC-EFNGKLLASI-N----------STVRLFEWTNEKELR--LECSHFNNIIALFLKVKGDFILVGDLMR-SL 1146 (1225)
Q Consensus 1084 --G~v~al~-~f~G~LLa~v-g----------~~l~vy~l~~~~~L~--~e~~~~~~~i~~~l~~~g~~IlvGD~~k-Sv 1146 (1225)
..+..++ .=+|+|.++- + ..-.||.+..+..+. ......++- +.+...|+.+++.|... .|
T Consensus 96 ~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~png--i~~spdg~~lyv~~~~~~~i 173 (297)
T 3g4e_A 96 KNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQVDISNG--LDWSLDHKIFYYIDSLSYSV 173 (297)
T ss_dssp SSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEESBEEE--EEECTTSCEEEEEEGGGTEE
T ss_pred CCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeeccccccc--eEEcCCCCEEEEecCCCCcE
Confidence 2244443 2379988874 2 345677776544333 222233332 22223467888888764 57
Q ss_pred EEEEEecCCCeE
Q psy7977 1147 TLLQYKTMEGSF 1158 (1225)
Q Consensus 1147 ~~l~y~~~~~~L 1158 (1225)
+.+.++++..++
T Consensus 174 ~~~~~d~~~G~~ 185 (297)
T 3g4e_A 174 DAFDYDLQTGQI 185 (297)
T ss_dssp EEEEECTTTCCE
T ss_pred EEEeccCCCCcc
Confidence 766666455544
No 150
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=81.16 E-value=70 Score=35.16 Aligned_cols=104 Identities=14% Similarity=0.134 Sum_probs=63.3
Q ss_pred CEEEEE-ECCeEEEEEeeccceeEEe--eeccCceeEEEEeccCCCCCCCCccccCcEEEEEEecCCeEEEEeCCCcceE
Q psy7977 317 NQVLCA-TGCDVYYLEVHGSEIKQLA--HRALEYEVACLDISPLSNEETSSEPAKAQLAAVGLWTDISARLLSLPSLEEV 393 (1225)
Q Consensus 317 ~~VlVa-sgg~Lv~feid~~~L~ev~--~~~l~~eIScLai~~~~~~~~~~~~~~s~~laVG~w~d~tv~IlsL~~Le~v 393 (1225)
.+++.+ .++.|.++++..+...... ...-...|.|++..+. .++++.|.+ |++++||++..-...
T Consensus 29 ~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~-----------g~~l~s~s~-D~~v~iw~~~~~~~~ 96 (345)
T 3fm0_A 29 TLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPC-----------GNYLASASF-DATTCIWKKNQDDFE 96 (345)
T ss_dssp SCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTT-----------SSEEEEEET-TSCEEEEEECCC-EE
T ss_pred CEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCC-----------CCEEEEEEC-CCcEEEEEccCCCeE
Confidence 344444 4677888877654322211 1223467899998762 468899987 999999998643221
Q ss_pred EeecCCC-CCCcccEEEEeeCCeeEEEEEECCCcEEEEEEcC
Q psy7977 394 CKEPLGG-EIIPRSILMTCFEGHCYLLVALGDGSMFYFSLDP 434 (1225)
Q Consensus 394 ~~~~L~~-~~~P~SIll~~l~~~~~LlVGl~nG~L~~y~ld~ 434 (1225)
....+.+ .....++.+. +...+|..|-.||.+..+.++.
T Consensus 97 ~~~~~~~h~~~v~~v~~s--p~~~~l~s~s~D~~v~iwd~~~ 136 (345)
T 3fm0_A 97 CVTTLEGHENEVKSVAWA--PSGNLLATCSRDKSVWVWEVDE 136 (345)
T ss_dssp EEEEECCCSSCEEEEEEC--TTSSEEEEEETTSCEEEEEECT
T ss_pred EEEEccCCCCCceEEEEe--CCCCEEEEEECCCeEEEEECCC
Confidence 2222321 1112233332 2457899999999999999864
No 151
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=80.05 E-value=61 Score=37.04 Aligned_cols=171 Identities=9% Similarity=0.084 Sum_probs=95.0
Q ss_pred EEEEEEECCCCcEEEEEECCCCCceEEEEEEEecCCCCeEEEEEeeeeCCCCCCCcceEEEEEEEeCCcEEEEEEEEecC
Q psy7977 1005 HNLLIIDQNTFEILHAHQLFPGEYALSLISSKFGEDPNTYFVLGTAVVHPEENEPKQGRIIIFHYDDGKLQQIAEKEIKG 1084 (1225)
Q Consensus 1005 s~irlvdp~t~~~i~~~eL~~nE~~~si~~v~~~~~~~~~lvVGTa~~~~eed~~~~GrI~vf~i~~~kL~lv~~~ev~G 1084 (1225)
..|++.|..+.+........ ..+ ..+.|..+++.+++.+.. .....|++|++..++++.+.. ..+
T Consensus 203 ~~i~~~d~~tg~~~~l~~~~--~~~---~~~~~spdg~~la~~~~~--------~g~~~i~~~d~~~~~~~~l~~--~~~ 267 (415)
T 2hqs_A 203 SALVIQTLANGAVRQVASFP--RHN---GAPAFSPDGSKLAFALSK--------TGSLNLYVMDLASGQIRQVTD--GRS 267 (415)
T ss_dssp CEEEEEETTTCCEEEEECCS--SCE---EEEEECTTSSEEEEEECT--------TSSCEEEEEETTTCCEEECCC--CSS
T ss_pred cEEEEEECCCCcEEEeecCC--Ccc---cCEEEcCCCCEEEEEEec--------CCCceEEEEECCCCCEEeCcC--CCC
Confidence 47999999888765332221 223 334566555444434431 124578888887666644432 345
Q ss_pred ceeeeccc-cCe-EEEEeCC----EEEEEEcCCCceeeeeecccceeEEEEE--EEECCEEEEeecccc-EEEEEEecCC
Q psy7977 1085 ACYSMCEF-NGK-LLASINS----TVRLFEWTNEKELRLECSHFNNIIALFL--KVKGDFILVGDLMRS-LTLLQYKTME 1155 (1225)
Q Consensus 1085 ~v~al~~f-~G~-LLa~vg~----~l~vy~l~~~~~L~~e~~~~~~~i~~~l--~~~g~~IlvGD~~kS-v~~l~y~~~~ 1155 (1225)
.+.+++-- +|+ |+.+... +|.+|++...+..+... .... +..+ ...|.+|+++....+ ..+..|+.+.
T Consensus 268 ~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~~l~~--~~~~-~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~ 344 (415)
T 2hqs_A 268 NNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITW--EGSQ-NQDADVSSDGKFMVMVSSNGGQQHIAKQDLAT 344 (415)
T ss_dssp CEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCC--SSSE-EEEEEECTTSSEEEEEEECSSCEEEEEEETTT
T ss_pred cccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEEEEec--CCCc-ccCeEECCCCCEEEEEECcCCceEEEEEECCC
Confidence 66665422 576 4444432 67777876554322111 1112 2233 335678877765433 5667788877
Q ss_pred CeEEEEeccCCCceeEEEEeeeCCc-EEEEcCCC---cEEEEEeC
Q psy7977 1156 GSFEEISRDYNPNWMTSIEILDDEL-FLGAENSY---NLFICQKD 1196 (1225)
Q Consensus 1156 ~~L~~~arD~~~~wvta~~~Ld~dt-~l~aD~~g---Nl~vl~~~ 1196 (1225)
.+...+.... ++.+..+-.++. ++.+..++ .|+++..+
T Consensus 345 ~~~~~l~~~~---~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~ 386 (415)
T 2hqs_A 345 GGVQVLSSTF---LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTD 386 (415)
T ss_dssp CCEEECCCSS---SCEEEEECTTSSEEEEEEEETTEEEEEEEETT
T ss_pred CCEEEecCCC---CcCCeEEcCCCCEEEEEEcCCCccEEEEEECC
Confidence 7777666542 777888876664 44443333 56666554
No 152
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=79.98 E-value=58 Score=33.55 Aligned_cols=105 Identities=15% Similarity=0.082 Sum_probs=53.0
Q ss_pred CCEEEEEECCeEEEEEeec-cceeEEeeeccCceeEEEEeccCCCCCCCCccccCcEEEEEEec-CC--eEEEEeCCCcc
Q psy7977 316 KNQVLCATGCDVYYLEVHG-SEIKQLAHRALEYEVACLDISPLSNEETSSEPAKAQLAAVGLWT-DI--SARLLSLPSLE 391 (1225)
Q Consensus 316 ~~~VlVasgg~Lv~feid~-~~L~ev~~~~l~~eIScLai~~~~~~~~~~~~~~s~~laVG~w~-d~--tv~IlsL~~Le 391 (1225)
+.+++.+.++.|..++++. ++...+....-...+.++++.+ ..++++++.+. ++ .|..+.+..-+
T Consensus 53 g~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~sp-----------dg~~l~~~~~~~~~~~~l~~~~~~~~~ 121 (297)
T 2ojh_A 53 GKYLLLNSEGLLYRLSLAGDPSPEKVDTGFATICNNDHGISP-----------DGALYAISDKVEFGKSAIYLLPSTGGT 121 (297)
T ss_dssp SSEEEEEETTEEEEEESSSCCSCEECCCTTCCCBCSCCEECT-----------TSSEEEEEECTTTSSCEEEEEETTCCC
T ss_pred CCEEEEEcCCeEEEEeCCCCCCceEeccccccccccceEECC-----------CCCEEEEEEeCCCCcceEEEEECCCCc
Confidence 4455555677888888776 5443322211124456677654 24567777742 23 44445544322
Q ss_pred eEEeecCCCCCCcccEEEEeeC-CeeEE-EEEECCCcEEEEEEcCCCC
Q psy7977 392 EVCKEPLGGEIIPRSILMTCFE-GHCYL-LVALGDGSMFYFSLDPASG 437 (1225)
Q Consensus 392 ~v~~~~L~~~~~P~SIll~~l~-~~~~L-lVGl~nG~L~~y~ld~~sg 437 (1225)
. ..+..... +....+. ...+| +.+..+|.+..|.++..++
T Consensus 122 ~---~~~~~~~~---~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~ 163 (297)
T 2ojh_A 122 P---RLMTKNLP---SYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSG 163 (297)
T ss_dssp C---EECCSSSS---EEEEEECTTSSEEEEEEEETTEEEEEEEETTTC
T ss_pred e---EEeecCCC---ccceEECCCCCEEEEEECCCCceEEEEEECCCC
Confidence 1 11211111 2222232 33344 4777889888888775444
No 153
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=79.52 E-value=75 Score=34.51 Aligned_cols=170 Identities=10% Similarity=0.031 Sum_probs=90.3
Q ss_pred EEEEEEECCC--CcEEEEEECCCCCceEEEEEEEecCCCCeEEEEEeeeeCCCCCCCcceEEEEEEEeCCcEEEEEEEEe
Q psy7977 1005 HNLLIIDQNT--FEILHAHQLFPGEYALSLISSKFGEDPNTYFVLGTAVVHPEENEPKQGRIIIFHYDDGKLQQIAEKEI 1082 (1225)
Q Consensus 1005 s~irlvdp~t--~~~i~~~eL~~nE~~~si~~v~~~~~~~~~lvVGTa~~~~eed~~~~GrI~vf~i~~~kL~lv~~~ev 1082 (1225)
+.+..+|+.+ |+.+.. +...-...++ +.+ +...+++|-..... .......+++|+...++.+.+...+.
T Consensus 67 ~~~~~~d~~~~~W~~~~~--~p~~r~~~~~--~~~---~~~lyv~GG~~~~~--~~~~~~~~~~~d~~~~~W~~~~~~p~ 137 (315)
T 4asc_A 67 AYFLQFDHLDSEWLGMPP--LPSPRCLFGL--GEA---LNSIYVVGGREIKD--GERCLDSVMCYDRLSFKWGESDPLPY 137 (315)
T ss_dssp EEEEEEETTTTEEEECCC--BSSCEESCEE--EEE---TTEEEEECCEESST--TCCBCCCEEEEETTTTEEEECCCCSS
T ss_pred cceEEecCCCCeEEECCC--CCcchhceeE--EEE---CCEEEEEeCCcCCC--CCcccceEEEECCCCCcEeECCCCCC
Confidence 4588899976 544432 2222111222 233 23667777543211 23345567888877666665543332
Q ss_pred cCceeeeccccCeEEEEeC--------CEEEEEEcCCCceeeeeecccceeEEEEEEEECC-EEEEeeccc---cEEEEE
Q psy7977 1083 KGACYSMCEFNGKLLASIN--------STVRLFEWTNEKELRLECSHFNNIIALFLKVKGD-FILVGDLMR---SLTLLQ 1150 (1225)
Q Consensus 1083 ~G~v~al~~f~G~LLa~vg--------~~l~vy~l~~~~~L~~e~~~~~~~i~~~l~~~g~-~IlvGD~~k---Sv~~l~ 1150 (1225)
.-.-.+++.++|+|.+.=| +.+.+|+...++--.......+.. .....+.++ .+++|-... .-.+..
T Consensus 138 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~-~~~~~~~~~~iyv~GG~~~~~~~~~~~~ 216 (315)
T 4asc_A 138 VVYGHTVLSHMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARS-LFGATVHDGRIIVAAGVTDTGLTSSAEV 216 (315)
T ss_dssp CCBSCEEEEETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCB-SCEEEEETTEEEEEEEECSSSEEEEEEE
T ss_pred cccceeEEEECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchh-ceEEEEECCEEEEEeccCCCCccceEEE
Confidence 2222334446777665433 257888877654222111111111 011223355 444554322 235678
Q ss_pred EecCCCeEEEEeccCCCceeEEEEeeeCCc-EEEE
Q psy7977 1151 YKTMEGSFEEISRDYNPNWMTSIEILDDEL-FLGA 1184 (1225)
Q Consensus 1151 y~~~~~~L~~~arD~~~~wvta~~~Ld~dt-~l~a 1184 (1225)
|+.+.++-..++.-..+|.-.++..++..- ++|+
T Consensus 217 yd~~~~~W~~~~~~p~~r~~~~~~~~~~~l~v~GG 251 (315)
T 4asc_A 217 YSITDNKWAPFEAFPQERSSLSLVSLVGTLYAIGG 251 (315)
T ss_dssp EETTTTEEEEECCCSSCCBSCEEEEETTEEEEEEE
T ss_pred EECCCCeEEECCCCCCcccceeEEEECCEEEEECC
Confidence 999999999998877888877777776653 4444
No 154
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=78.93 E-value=97 Score=35.46 Aligned_cols=191 Identities=10% Similarity=0.061 Sum_probs=86.9
Q ss_pred CccEEEEEecCCCccEEEEeecceeeEEEEeeCCC-cceEeEeeeCCCCCCccEEEEEcCCceE-EEEEc-Cceeeeecc
Q psy7977 183 QGQLVTCSGGFKEGSLRIIRNGIGIEEHACIDLPG-IKGIWALSIGSPKNLDNTLVLSFVGHTR-VLTLS-GAEVEETEM 259 (1225)
Q Consensus 183 ~~qLva~sG~g~~GsLrilR~GI~~~~~~s~eLpg-v~~iWtl~~~~~~~~d~yLVlSf~~~T~-Vl~i~-ge~veEv~~ 259 (1225)
..+++.++|.|.++.++++.-.=.-+.+++..+.+ -..+.++.... ....+|+-+-.+.|. +..+. |+.+..+..
T Consensus 144 ~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~--g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g 221 (356)
T 2w18_A 144 KRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQ--GMQEALLGTTIMNNIVIWNLKTGQLLKKMHI 221 (356)
T ss_dssp TTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEE--TSTTEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred CCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccC--CCCceEEEecCCCcEEEEECCCCcEEEEEcC
Confidence 46788888899999998887633223444433221 12233332100 112445544445543 44442 222222211
Q ss_pred C----------CcccccCeEEEEeeCCCeEEEE---ccCcEEEEecCCcceee--eecCCCCC--cEEEEEecCCEEEEE
Q psy7977 260 G----------GFTSDQQTFYCGNVDPRTVLQV---TPSAAILISTESKARVS--SWEPPNGK--SISVVSCNKNQVLCA 322 (1225)
Q Consensus 260 s----------gF~~~~~TL~ag~l~~~~iVQV---T~~~IRli~~~~~~~i~--eW~~p~g~--~Iv~As~n~~~VlVa 322 (1225)
. .|..+..++.++.-..+...-+ ....||+.+.++++.+. .|..|+|. .+...+..+..++-.
T Consensus 222 ~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~sg~~lASg 301 (356)
T 2w18_A 222 DDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVKDHCAAAI 301 (356)
T ss_dssp CC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEETTEEEEE
T ss_pred CCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccCCCEEEEE
Confidence 0 1333334443332110000000 01234555554433221 22223232 233333333333333
Q ss_pred -ECCeEEEEEeeccceeEEeeeccCceeEEEEeccCCCCCCCCccccCcEEEEEEecCCeEEEEeC
Q psy7977 323 -TGCDVYYLEVHGSEIKQLAHRALEYEVACLDISPLSNEETSSEPAKAQLAAVGLWTDISARLLSL 387 (1225)
Q Consensus 323 -sgg~Lv~feid~~~L~ev~~~~l~~eIScLai~~~~~~~~~~~~~~s~~laVG~w~d~tv~IlsL 387 (1225)
.++.|.+.++..+++...-+-.-+.-+++++++|. .++++-|.+ |++|+||.+
T Consensus 302 S~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPD-----------G~~LaSGS~-D~TIklWd~ 355 (356)
T 2w18_A 302 LTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGT-----------DSHLLAGQK-DGNIFVYHY 355 (356)
T ss_dssp ETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSS-----------SSEEEEECT-TSCEEEEEE
T ss_pred cCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCC-----------CCEEEEEEC-CCcEEEecC
Confidence 47889888887664332111111223456787652 467888887 999999975
No 155
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=77.46 E-value=81 Score=33.78 Aligned_cols=182 Identities=10% Similarity=0.070 Sum_probs=96.6
Q ss_pred EEEEEEECCC-----CcEEEEEECCCCCceEEEEEEEecCCCCeEEEEEeeeeCCCCCCCcceEEEEEEEeCCcEEEEEE
Q psy7977 1005 HNLLIIDQNT-----FEILHAHQLFPGEYALSLISSKFGEDPNTYFVLGTAVVHPEENEPKQGRIIIFHYDDGKLQQIAE 1079 (1225)
Q Consensus 1005 s~irlvdp~t-----~~~i~~~eL~~nE~~~si~~v~~~~~~~~~lvVGTa~~~~eed~~~~GrI~vf~i~~~kL~lv~~ 1079 (1225)
..+..+|+.+ |+.+..... .-...+++ .+ +..++++|-.. + ......+++|+...++.+.+..
T Consensus 78 ~~~~~~d~~~~~~~~W~~~~~~p~--~r~~~~~~--~~---~~~lyv~GG~~--~---~~~~~~~~~~d~~~~~W~~~~~ 145 (301)
T 2vpj_A 78 SSVECLDYTADEDGVWYSVAPMNV--RRGLAGAT--TL---GDMIYVSGGFD--G---SRRHTSMERYDPNIDQWSMLGD 145 (301)
T ss_dssp CCEEEEETTCCTTCCCEEECCCSS--CCBSCEEE--EE---TTEEEEECCBC--S---SCBCCEEEEEETTTTEEEEEEE
T ss_pred ceEEEEECCCCCCCeeEECCCCCC--CccceeEE--EE---CCEEEEEcccC--C---CcccceEEEEcCCCCeEEECCC
Confidence 4577888876 666643322 22222222 23 23566666432 1 1224567888877667666654
Q ss_pred EEecCceeeeccccCeEEEEeC-------CEEEEEEcCCCceeeeeecccceeEEEEEEEECCEE-EEeeccc---cEEE
Q psy7977 1080 KEIKGACYSMCEFNGKLLASIN-------STVRLFEWTNEKELRLECSHFNNIIALFLKVKGDFI-LVGDLMR---SLTL 1148 (1225)
Q Consensus 1080 ~ev~G~v~al~~f~G~LLa~vg-------~~l~vy~l~~~~~L~~e~~~~~~~i~~~l~~~g~~I-lvGD~~k---Sv~~ 1148 (1225)
.+..-.-.+++.++|+|.+.=| +.+.+|++..++--.......+.. .....+.++.| ++|-.-. .-.+
T Consensus 146 ~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~-~~~~~~~~~~i~v~GG~~~~~~~~~v 224 (301)
T 2vpj_A 146 MQTAREGAGLVVASGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRS-GAGVALLNDHIYVVGGFDGTAHLSSV 224 (301)
T ss_dssp CSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCB-SCEEEEETTEEEEECCBCSSSBCCCE
T ss_pred CCCCcccceEEEECCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccc-cceEEEECCEEEEEeCCCCCcccceE
Confidence 4332222344455787765422 568888887654222111111111 11122345544 4453321 2346
Q ss_pred EEEecCCCeEEEEeccCCCceeEEEEeeeCCcEEEEcCCCc---EEEEEeCCCC
Q psy7977 1149 LQYKTMEGSFEEISRDYNPNWMTSIEILDDELFLGAENSYN---LFICQKDSAA 1199 (1225)
Q Consensus 1149 l~y~~~~~~L~~~arD~~~~wvta~~~Ld~dt~l~aD~~gN---l~vl~~~~~~ 1199 (1225)
..|+.+.++-..++.-..+|.-.++..++..-++.+-.+++ --+..|+++.
T Consensus 225 ~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~ 278 (301)
T 2vpj_A 225 EAYNIRTDSWTTVTSMTTPRCYVGATVLRGRLYAIAGYDGNSLLSSIECYDPII 278 (301)
T ss_dssp EEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBCSSSBEEEEEEEETTT
T ss_pred EEEeCCCCcEEECCCCCCcccceeEEEECCEEEEEcCcCCCcccccEEEEcCCC
Confidence 67999999999998877888777777776554444332221 2456677653
No 156
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=76.21 E-value=1e+02 Score=34.41 Aligned_cols=136 Identities=13% Similarity=0.088 Sum_probs=82.0
Q ss_pred CcEEEEecCCcceeeeecCCCCCcEEEEEec--CCEEEEE-ECCeEEEEEeeccceeEEeeeccCceeEEEEeccCCCCC
Q psy7977 285 SAAILISTESKARVSSWEPPNGKSISVVSCN--KNQVLCA-TGCDVYYLEVHGSEIKQLAHRALEYEVACLDISPLSNEE 361 (1225)
Q Consensus 285 ~~IRli~~~~~~~i~eW~~p~g~~Iv~As~n--~~~VlVa-sgg~Lv~feid~~~L~ev~~~~l~~eIScLai~~~~~~~ 361 (1225)
..|++.+...++.+..+.. ....|.+.+.. +.+++.+ .++.+.++++..++.. ........+.++++.+.
T Consensus 145 ~~i~iwd~~~~~~~~~~~~-h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~--~~~~~~~~v~~~~~~~~---- 217 (393)
T 1erj_A 145 RLIRIWDIENRKIVMILQG-HEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCS--LTLSIEDGVTTVAVSPG---- 217 (393)
T ss_dssp SCEEEEETTTTEEEEEECC-CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEE--EEEECSSCEEEEEECST----
T ss_pred CeEEEEECCCCcEEEEEcc-CCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeE--EEEEcCCCcEEEEEECC----
Confidence 4577777765555555543 23457777664 4455555 5788988887654322 22334567888888652
Q ss_pred CCCccccCcEEEEEEecCCeEEEEeCCCcceEEeecCCC---CCCcccEEEEee-CCeeEEEEEECCCcEEEEEEcC
Q psy7977 362 TSSEPAKAQLAAVGLWTDISARLLSLPSLEEVCKEPLGG---EIIPRSILMTCF-EGHCYLLVALGDGSMFYFSLDP 434 (1225)
Q Consensus 362 ~~~~~~~s~~laVG~w~d~tv~IlsL~~Le~v~~~~L~~---~~~P~SIll~~l-~~~~~LlVGl~nG~L~~y~ld~ 434 (1225)
...+++.|.. |++|++|++.+-+.+....... ......+.-+.+ ....+|+.|..||.+..|.+..
T Consensus 218 ------~~~~l~~~s~-d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~ 287 (393)
T 1erj_A 218 ------DGKYIAAGSL-DRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQN 287 (393)
T ss_dssp ------TCCEEEEEET-TSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred ------CCCEEEEEcC-CCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCC
Confidence 2568888987 9999999997644332211000 011112222223 2457899999999999998753
No 157
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=75.86 E-value=11 Score=45.48 Aligned_cols=145 Identities=14% Similarity=0.165 Sum_probs=83.1
Q ss_pred EEecCCCCeEEEEEeeeeCCCCCCCcceEEEEEEEeCCcEEEEEEEEecCceeeec-cc--cC-eEEEEe--CCEEEEEE
Q psy7977 1035 SKFGEDPNTYFVLGTAVVHPEENEPKQGRIIIFHYDDGKLQQIAEKEIKGACYSMC-EF--NG-KLLASI--NSTVRLFE 1108 (1225)
Q Consensus 1035 v~~~~~~~~~lvVGTa~~~~eed~~~~GrI~vf~i~~~kL~lv~~~ev~G~v~al~-~f--~G-~LLa~v--g~~l~vy~ 1108 (1225)
+.|..+ .+|+.|+. -|.|.+|++..++.....-..-.++|++++ .| +| ++||+. ..+++||+
T Consensus 272 v~~s~~--~~lasgs~----------DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD 339 (524)
T 2j04_B 272 FDFLSP--TTVVCGFK----------NGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFN 339 (524)
T ss_dssp EEESSS--SEEEEEET----------TSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEEC
T ss_pred EEecCC--CeEEEEeC----------CCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEE
Confidence 455442 37888862 478999998754211111122357899984 44 46 777654 57999999
Q ss_pred cCCCceeeeeecccc--eeEEEEEEEECCEEEEeeccccEEEEEEecCCCeEEEEeccCCCceeEEEEeeeCC-cEEEEc
Q psy7977 1109 WTNEKELRLECSHFN--NIIALFLKVKGDFILVGDLMRSLTLLQYKTMEGSFEEISRDYNPNWMTSIEILDDE-LFLGAE 1185 (1225)
Q Consensus 1109 l~~~~~L~~e~~~~~--~~i~~~l~~~g~~IlvGD~~kSv~~l~y~~~~~~L~~~arD~~~~wvta~~~Ld~d-t~l~aD 1185 (1225)
+...+.+..-..+.. +...+.....+..++.|+.-.+|.+.-.+. ...+..+.. +..+|+++++=.++ .++.+-
T Consensus 340 ~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~-~~~~~~l~g--H~~~V~sva~Sp~g~~l~Sgs 416 (524)
T 2j04_B 340 PKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRA-AFAVHPLVS--RETTITAIGVSRLHPMVLAGS 416 (524)
T ss_dssp GGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTC-TTCCEEEEE--CSSCEEEEECCSSCCBCEEEE
T ss_pred CCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcc-cccceeeec--CCCceEEEEeCCCCCeEEEEE
Confidence 976543321001111 110122223366788888777776643322 222233333 45678888886554 577888
Q ss_pred CCCcEEEEE
Q psy7977 1186 NSYNLFICQ 1194 (1225)
Q Consensus 1186 ~~gNl~vl~ 1194 (1225)
.+|.+.+..
T Consensus 417 ~Dgtv~lwd 425 (524)
T 2j04_B 417 ADGSLIITN 425 (524)
T ss_dssp TTTEEECCB
T ss_pred CCCEEEEEe
Confidence 888887754
No 158
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=75.30 E-value=49 Score=35.66 Aligned_cols=129 Identities=12% Similarity=0.132 Sum_probs=72.0
Q ss_pred ceEEEEEEEeCCcEEEEEEEEecCceeeeccc-cCeEEEEeCCEEEEEEcCCCceee-eee-cccc-eeEEEEEEEE-CC
Q psy7977 1061 QGRIIIFHYDDGKLQQIAEKEIKGACYSMCEF-NGKLLASINSTVRLFEWTNEKELR-LEC-SHFN-NIIALFLKVK-GD 1135 (1225)
Q Consensus 1061 ~GrI~vf~i~~~kL~lv~~~ev~G~v~al~~f-~G~LLa~vg~~l~vy~l~~~~~L~-~e~-~~~~-~~i~~~l~~~-g~ 1135 (1225)
.++|+.|+...++++. ....+.|.+++.- +|+|+++.+..|.+|++...+.-. ... ...+ +. +..+... .+
T Consensus 34 ~~~i~~~d~~~~~~~~---~~~~~~~~~i~~~~dG~l~v~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~-~~di~~d~dG 109 (297)
T 3g4e_A 34 AKKVCRWDSFTKQVQR---VTMDAPVSSVALRQSGGYVATIGTKFCALNWKEQSAVVLATVDNDKKNNR-FNDGKVDPAG 109 (297)
T ss_dssp TTEEEEEETTTCCEEE---EECSSCEEEEEEBTTSSEEEEETTEEEEEETTTTEEEEEEECCTTCSSEE-EEEEEECTTS
T ss_pred CCEEEEEECCCCcEEE---EeCCCceEEEEECCCCCEEEEECCeEEEEECCCCcEEEEEecCCCCCCCC-CCCEEECCCC
Confidence 4677777765555532 2346778887744 789999999999999987544222 111 1111 22 3445433 34
Q ss_pred EEEEeecc----------ccEEEEEEecCCCeEEEEeccCCCceeEEEEeeeCC-cEEEEcC-CCcEEEEEeC
Q psy7977 1136 FILVGDLM----------RSLTLLQYKTMEGSFEEISRDYNPNWMTSIEILDDE-LFLGAEN-SYNLFICQKD 1196 (1225)
Q Consensus 1136 ~IlvGD~~----------kSv~~l~y~~~~~~L~~~arD~~~~wvta~~~Ld~d-t~l~aD~-~gNl~vl~~~ 1196 (1225)
++++|++. ..-.+.+|++. .++..+..+.. +...+.+-.++ ++.++|. .+.|+++.++
T Consensus 110 ~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~~~~~~~~~--~pngi~~spdg~~lyv~~~~~~~i~~~~~d 179 (297)
T 3g4e_A 110 RYFAGTMAEETAPAVLERHQGALYSLFPD-HHVKKYFDQVD--ISNGLDWSLDHKIFYYIDSLSYSVDAFDYD 179 (297)
T ss_dssp CEEEEEEECCSBTTBCCTTCEEEEEECTT-SCEEEEEEEES--BEEEEEECTTSCEEEEEEGGGTEEEEEEEC
T ss_pred CEEEecCCcccccccccCCCcEEEEEECC-CCEEEEeeccc--cccceEEcCCCCEEEEecCCCCcEEEEecc
Confidence 68888864 34567778764 44544444322 22333333233 3445554 3456666664
No 159
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=74.51 E-value=17 Score=39.59 Aligned_cols=148 Identities=14% Similarity=0.172 Sum_probs=85.0
Q ss_pred EEecCCCCeEEEEEeeeeCCCCCCCcceEEEEEEEeCCcEEEEEEE-EecCceeeecc---ccCeEEEEe--CCEEEEEE
Q psy7977 1035 SKFGEDPNTYFVLGTAVVHPEENEPKQGRIIIFHYDDGKLQQIAEK-EIKGACYSMCE---FNGKLLASI--NSTVRLFE 1108 (1225)
Q Consensus 1035 v~~~~~~~~~lvVGTa~~~~eed~~~~GrI~vf~i~~~kL~lv~~~-ev~G~v~al~~---f~G~LLa~v--g~~l~vy~ 1108 (1225)
+.|..+ ..+|+.|.. -|.|.+|++..++.++++.- .-+++|++++- .+|.+||+. ..+|++|+
T Consensus 19 v~~s~~-g~~lasgs~----------D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd 87 (316)
T 3bg1_A 19 AQMDYY-GTRLATCSS----------DRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWR 87 (316)
T ss_dssp EEECGG-GCEEEEEET----------TTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEEC
T ss_pred eeEcCC-CCEEEEEeC----------CCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEE
Confidence 455433 357777752 36899999987654444432 34688999873 237666544 47999999
Q ss_pred cCCCc--eeeeeecccceeEEEEEEE--E--CCEEEEeeccccEEEEEEecCCCeEEE-EeccCCCceeEEEEeeeC---
Q psy7977 1109 WTNEK--ELRLECSHFNNIIALFLKV--K--GDFILVGDLMRSLTLLQYKTMEGSFEE-ISRDYNPNWMTSIEILDD--- 1178 (1225)
Q Consensus 1109 l~~~~--~L~~e~~~~~~~i~~~l~~--~--g~~IlvGD~~kSv~~l~y~~~~~~L~~-~arD~~~~wvta~~~Ld~--- 1178 (1225)
+...+ .+. ........ +..+.. . |.+++.|..-..+.+..++... +... .....+...++++.+-.+
T Consensus 88 ~~~~~~~~~~-~~~~h~~~-V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~-~~~~~~~~~~h~~~v~~~~~~~~~~~ 164 (316)
T 3bg1_A 88 EENGTWEKSH-EHAGHDSS-VNSVCWAPHDYGLILACGSSDGAISLLTYTGEG-QWEVKKINNAHTIGCNAVSWAPAVVP 164 (316)
T ss_dssp CSSSCCCEEE-EECCCSSC-CCEEEECCTTTCSCEEEECSSSCEEEEEECSSS-CEEECCBTTSSSSCBCCCEECCCCCC
T ss_pred CCCCcceEEE-EccCCCCc-eEEEEECCCCCCcEEEEEcCCCCEEEEecCCCC-CcceeeeeccccCCcceEEEccccCC
Confidence 97543 121 11111111 133332 2 5688888888888887665431 1211 111223345555554332
Q ss_pred ---------------CcEEEEcCCCcEEEEEeC
Q psy7977 1179 ---------------ELFLGAENSYNLFICQKD 1196 (1225)
Q Consensus 1179 ---------------dt~l~aD~~gNl~vl~~~ 1196 (1225)
..++.+..++.+.+....
T Consensus 165 ~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~ 197 (316)
T 3bg1_A 165 GSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEE 197 (316)
T ss_dssp ------CCSCCCCCCCBEECCBTTSBCCEEEEC
T ss_pred ccccccccccCccccceEEEecCCCeEEEEEeC
Confidence 367888888888887774
No 160
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=74.42 E-value=96 Score=33.12 Aligned_cols=151 Identities=8% Similarity=0.009 Sum_probs=82.5
Q ss_pred cccccCeEEEEeeCCCeEEEEccCcEEEEecCC--cceeeeecCCCCCcEEEEEec----CCEEEEE-ECCeEEEEEeec
Q psy7977 262 FTSDQQTFYCGNVDPRTVLQVTPSAAILISTES--KARVSSWEPPNGKSISVVSCN----KNQVLCA-TGCDVYYLEVHG 334 (1225)
Q Consensus 262 F~~~~~TL~ag~l~~~~iVQVT~~~IRli~~~~--~~~i~eW~~p~g~~Iv~As~n----~~~VlVa-sgg~Lv~feid~ 334 (1225)
|..+...|+.|.. ...||+.+.+. .+.+..... ....|.+.+.+ +.+++-+ .++.+.+.++..
T Consensus 17 ~s~~g~~las~s~---------D~~v~iw~~~~~~~~~~~~l~g-H~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~ 86 (297)
T 2pm7_B 17 MDYYGKRMATCSS---------DKTIKIFEVEGETHKLIDTLTG-HEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEEN 86 (297)
T ss_dssp ECTTSSEEEEEET---------TSCEEEEEBCSSCBCCCEEECC-CSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSS
T ss_pred ECCCCCEEEEEeC---------CCEEEEEecCCCCcEEEEEEcc-ccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCC
Confidence 4445555666543 23355555432 123333332 23357777764 3344444 588999888875
Q ss_pred cceeEEeee-ccCceeEEEEeccCCCCCCCCccccCcEEEEEEecCCeEEEEeCCCcc---eEEeecCCCCCCcccEEEE
Q psy7977 335 SEIKQLAHR-ALEYEVACLDISPLSNEETSSEPAKAQLAAVGLWTDISARLLSLPSLE---EVCKEPLGGEIIPRSILMT 410 (1225)
Q Consensus 335 ~~L~ev~~~-~l~~eIScLai~~~~~~~~~~~~~~s~~laVG~w~d~tv~IlsL~~Le---~v~~~~L~~~~~P~SIll~ 410 (1225)
+....+... .-...|.|++..+. ....+++.|.+ |++|++|++.... ......- .....++.+.
T Consensus 87 ~~~~~~~~~~~h~~~v~~v~~~p~---------~~g~~l~s~s~-d~~v~~wd~~~~~~~~~~~~~~h--~~~v~~~~~~ 154 (297)
T 2pm7_B 87 GRWSQIAVHAVHSASVNSVQWAPH---------EYGPMLLVASS-DGKVSVVEFKENGTTSPIIIDAH--AIGVNSASWA 154 (297)
T ss_dssp SCBCCCEEECCCSSCEEEEEECCG---------GGCSEEEEEET-TSEEEEEEBCSSSCBCCEEEECC--SSCEEEEEEC
T ss_pred CceEEEEEeecCCCceeEEEeCcC---------CCCcEEEEEEC-CCcEEEEEecCCCceeeeeeecc--cCccceEeec
Confidence 432222211 22457889988652 12468888987 9999999996432 1111110 0111222222
Q ss_pred eeC-----------CeeEEEEEECCCcEEEEEEcC
Q psy7977 411 CFE-----------GHCYLLVALGDGSMFYFSLDP 434 (1225)
Q Consensus 411 ~l~-----------~~~~LlVGl~nG~L~~y~ld~ 434 (1225)
.-. ...+|..|..||.+..|.+..
T Consensus 155 p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~ 189 (297)
T 2pm7_B 155 PATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNS 189 (297)
T ss_dssp CCC------------CCEEEEEETTSCEEEEEEET
T ss_pred CCcccccccCCCCCCcceEEEEcCCCcEEEEEEcC
Confidence 110 134799999999999998864
No 161
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=72.74 E-value=1.3e+02 Score=33.73 Aligned_cols=136 Identities=11% Similarity=0.017 Sum_probs=76.4
Q ss_pred CcEEEEecCCcceeeeecC------CCCCcEEEEEec--CCEEEEE-ECCeEEEEEeecccee-----------EEeeec
Q psy7977 285 SAAILISTESKARVSSWEP------PNGKSISVVSCN--KNQVLCA-TGCDVYYLEVHGSEIK-----------QLAHRA 344 (1225)
Q Consensus 285 ~~IRli~~~~~~~i~eW~~------p~g~~Iv~As~n--~~~VlVa-sgg~Lv~feid~~~L~-----------ev~~~~ 344 (1225)
..|++++...++.+..... .....|.+.+.. +.+++.+ .++.|.++++...... ...-..
T Consensus 229 ~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~ 308 (393)
T 1erj_A 229 RAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIG 308 (393)
T ss_dssp SCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEEC
T ss_pred CcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEec
Confidence 4577787765444444421 122357777765 3455555 5888998887642110 001111
Q ss_pred cCceeEEEEeccCCCCCCCCccccCcEEEEEEecCCeEEEEeCCCcceEEeecCCCCCCcccEEEEe---e-CCeeEEEE
Q psy7977 345 LEYEVACLDISPLSNEETSSEPAKAQLAAVGLWTDISARLLSLPSLEEVCKEPLGGEIIPRSILMTC---F-EGHCYLLV 420 (1225)
Q Consensus 345 l~~eIScLai~~~~~~~~~~~~~~s~~laVG~w~d~tv~IlsL~~Le~v~~~~L~~~~~P~SIll~~---l-~~~~~LlV 420 (1225)
-...|.|++..+ ...+++.|.. |++|++|++.+.+.+....-. .....++.+.. + ....+|..
T Consensus 309 h~~~v~~~~~~~-----------~~~~l~sgs~-D~~v~iwd~~~~~~~~~l~~h-~~~v~~v~~~~~~~~~p~~~~l~s 375 (393)
T 1erj_A 309 HKDFVLSVATTQ-----------NDEYILSGSK-DRGVLFWDKKSGNPLLMLQGH-RNSVISVAVANGSSLGPEYNVFAT 375 (393)
T ss_dssp CSSCEEEEEECG-----------GGCEEEEEET-TSEEEEEETTTCCEEEEEECC-SSCEEEEEECSSCTTCTTCEEEEE
T ss_pred ccCcEEEEEECC-----------CCCEEEEEeC-CCeEEEEECCCCeEEEEECCC-CCCEEEEEecCCcCcCCCCCEEEE
Confidence 234577777754 2467888886 999999999765544321110 01112333321 1 13568899
Q ss_pred EECCCcEEEEEEc
Q psy7977 421 ALGDGSMFYFSLD 433 (1225)
Q Consensus 421 Gl~nG~L~~y~ld 433 (1225)
|-.||.+..+.+.
T Consensus 376 gs~Dg~i~iW~~~ 388 (393)
T 1erj_A 376 GSGDCKARIWKYK 388 (393)
T ss_dssp EETTSEEEEEEEE
T ss_pred ECCCCcEEECccc
Confidence 9999999988775
No 162
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=72.31 E-value=80 Score=38.59 Aligned_cols=167 Identities=11% Similarity=0.089 Sum_probs=96.5
Q ss_pred EEEEEEECCCCcEEEEEECCCCCce---EEEEEEEecCCCCeEEEEEeeeeCCCCCCCcceEEEEEEEeCCcE---E--E
Q psy7977 1005 HNLLIIDQNTFEILHAHQLFPGEYA---LSLISSKFGEDPNTYFVLGTAVVHPEENEPKQGRIIIFHYDDGKL---Q--Q 1076 (1225)
Q Consensus 1005 s~irlvdp~t~~~i~~~eL~~nE~~---~si~~v~~~~~~~~~lvVGTa~~~~eed~~~~GrI~vf~i~~~kL---~--l 1076 (1225)
+.+++.|-.+ .+.. ++ .+.. -++-++.|.. +..++++|+. -|.|.+|++..+++ + .
T Consensus 107 g~V~iwd~~~--~l~~--l~-~~~~~~~~sv~svafSP-DG~~LAsgs~----------DGtVkIWd~~~~~l~~~~~i~ 170 (588)
T 2j04_A 107 GNVSVFKDNK--MLTN--LD-SKGNLSSRTYHCFEWNP-IESSIVVGNE----------DGELQFFSIRKNSENTPEFYF 170 (588)
T ss_dssp SCEEEEETTE--EEEE--CC-CSSCSTTTCEEEEEECS-SSSCEEEEET----------TSEEEEEECCCCTTTCCCCEE
T ss_pred CcEEEEeCCc--eeee--cc-CCCccccccEEEEEEcC-CCCEEEEEcC----------CCEEEEEECCCCcccccccee
Confidence 3578887544 3333 33 3320 1233455654 4578888862 58899999987654 2 2
Q ss_pred EEEEE-----ecCceeeeccc-cCeEEE-EeCCEEEEEEcCCCcee---e-eeecccceeEEEEEEEECCEEEEeecccc
Q psy7977 1077 IAEKE-----IKGACYSMCEF-NGKLLA-SINSTVRLFEWTNEKEL---R-LECSHFNNIIALFLKVKGDFILVGDLMRS 1145 (1225)
Q Consensus 1077 v~~~e-----v~G~v~al~~f-~G~LLa-~vg~~l~vy~l~~~~~L---~-~e~~~~~~~i~~~l~~~g~~IlvGD~~kS 1145 (1225)
++.-+ -.+.|++++-- +| |++ +-++++++|++..++.. + ....+- .. +..+.-.|++|+.+- -+.
T Consensus 171 l~ti~~~~~gh~~~V~sVawSPdg-Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~-~~-V~svaFsg~~LASa~-~~t 246 (588)
T 2j04_A 171 ESSIRLSDAGSKDWVTHIVWYEDV-LVAALSNNSVFSMTVSASSHQPVSRMIQNASR-RK-ITDLKIVDYKVVLTC-PGY 246 (588)
T ss_dssp EEEEECSCTTCCCCEEEEEEETTE-EEEEETTCCEEEECCCSSSSCCCEEEEECCCS-SC-CCCEEEETTEEEEEC-SSE
T ss_pred eeeeecccccccccEEEEEEcCCc-EEEEeCCCeEEEEECCCCccccceeeeccccc-Cc-EEEEEEECCEEEEEe-CCe
Confidence 22211 13588988644 56 544 46699999999876632 1 111111 11 233332278877774 365
Q ss_pred EEEEEEecCCCeEEEEeccCCCceeEEEEeeeCC---cEEEEcCCCcEEEEEe
Q psy7977 1146 LTLLQYKTMEGSFEEISRDYNPNWMTSIEILDDE---LFLGAENSYNLFICQK 1195 (1225)
Q Consensus 1146 v~~l~y~~~~~~L~~~arD~~~~wvta~~~Ld~d---t~l~aD~~gNl~vl~~ 1195 (1225)
|.+ |+...+++..+-.. +..+++.+.+.|.. .++.|+.+|- .+...
T Consensus 247 IkL--Wd~~~~~~~~~~~g-h~~~V~~va~~~s~d~~~La~a~edG~-klw~~ 295 (588)
T 2j04_A 247 VHK--IDLKNYSISSLKTG-SLENFHIIPLNHEKESTILLMSNKTSY-KVLLE 295 (588)
T ss_dssp EEE--EETTTTEEEEEECS-CCSCCCEEEETTCSSCEEEEECSSCEE-EEEES
T ss_pred EEE--EECCCCeEEEEEcC-CCceEEEEEeeeCCCCCEEEEEcCCCC-EEEee
Confidence 655 66667777555433 56667777773332 5899999998 55554
No 163
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=71.12 E-value=1.1e+02 Score=32.53 Aligned_cols=58 Identities=10% Similarity=0.042 Sum_probs=36.0
Q ss_pred cEEEEEEecCCeEEEEeCCCcceEEeecCCCCCCcccEEEEeeCCeeEEEEEECCCcEEEEEEc
Q psy7977 370 QLAAVGLWTDISARLLSLPSLEEVCKEPLGGEIIPRSILMTCFEGHCYLLVALGDGSMFYFSLD 433 (1225)
Q Consensus 370 ~~laVG~w~d~tv~IlsL~~Le~v~~~~L~~~~~P~SIll~~l~~~~~LlVGl~nG~L~~y~ld 433 (1225)
..+.+|.. ++.|..++. +-+.+....++. ....+++.. ..-.|++|+.+|.+......
T Consensus 266 g~l~v~t~-~ggl~~~d~-~g~~~~~~~~~~-~~~~~~~~d---~~g~l~~gt~~G~~~~~~~~ 323 (330)
T 3hxj_A 266 DTIYFGSY-DGHLYAINP-DGTEKWNFETGS-WIIATPVID---ENGTIYFGTRNGKFYALFNL 323 (330)
T ss_dssp SCEEEECT-TCEEEEECT-TSCEEEEEECSS-CCCSCCEEC---TTCCEEEECTTSCEEEEEC-
T ss_pred CeEEEecC-CCCEEEECC-CCcEEEEEEcCC-ccccceEEc---CCCEEEEEcCCCeEEEEecc
Confidence 45778886 778888874 444444444542 233344331 23458999999999887654
No 164
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=71.08 E-value=1.9e+02 Score=35.00 Aligned_cols=107 Identities=13% Similarity=0.103 Sum_probs=65.9
Q ss_pred CcEEEEecCCcceeeeecCCCCCcEEEEEecCCEEEEE-ECCeEEEEEeeccceeEEeeeccCceeEEEEeccCCCCCCC
Q psy7977 285 SAAILISTESKARVSSWEPPNGKSISVVSCNKNQVLCA-TGCDVYYLEVHGSEIKQLAHRALEYEVACLDISPLSNEETS 363 (1225)
Q Consensus 285 ~~IRli~~~~~~~i~eW~~p~g~~Iv~As~n~~~VlVa-sgg~Lv~feid~~~L~ev~~~~l~~eIScLai~~~~~~~~~ 363 (1225)
+.|.++|.++++.+..+.......-+..+-.++++.++ .++.|..+++.......+.+.......-.+++++.+.
T Consensus 177 ~~V~viD~~t~~v~~~i~~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~P~~ia~s~~~~---- 252 (567)
T 1qks_A 177 GQIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEG---- 252 (567)
T ss_dssp TEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTT----
T ss_pred CeEEEEECCCCeEEEEEeCCCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCCCCceeEEccccC----
Confidence 46777888776666666533221222233346788877 4678888876422334444555566666777763110
Q ss_pred CccccCcEEEEEEecCCeEEEEeCCCcceEEeecC
Q psy7977 364 SEPAKAQLAAVGLWTDISARLLSLPSLEEVCKEPL 398 (1225)
Q Consensus 364 ~~~~~s~~laVG~w~d~tv~IlsL~~Le~v~~~~L 398 (1225)
...++++|+.+.++++.|++..+++.+....+
T Consensus 253 ---pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~ 284 (567)
T 1qks_A 253 ---WEDKYAIAGAYWPPQYVIMDGETLEPKKIQST 284 (567)
T ss_dssp ---CTTTEEEEEEEETTEEEEEETTTCCEEEEEEC
T ss_pred ---CCCCEEEEEEccCCeEEEEECCCCcEEEEEec
Confidence 01457888877699999999988887765443
No 165
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=68.57 E-value=1.4e+02 Score=34.32 Aligned_cols=69 Identities=16% Similarity=0.039 Sum_probs=47.5
Q ss_pred CcEEEEEecC---CEEEEE-ECCeEEEEEeeccceeEEeeeccCceeEEEEeccCCCCCCCCccccCcEEEEEEecCCeE
Q psy7977 307 KSISVVSCNK---NQVLCA-TGCDVYYLEVHGSEIKQLAHRALEYEVACLDISPLSNEETSSEPAKAQLAAVGLWTDISA 382 (1225)
Q Consensus 307 ~~Iv~As~n~---~~VlVa-sgg~Lv~feid~~~L~ev~~~~l~~eIScLai~~~~~~~~~~~~~~s~~laVG~w~d~tv 382 (1225)
..|.+.+.+. .+++.+ .++.|.++++..... ..........|.|++..+. .+++++|.. |++|
T Consensus 150 ~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~-~~~~~~~~~~v~~v~wspd-----------g~~lasgs~-dg~v 216 (434)
T 2oit_A 150 GMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVK-VCATLPSTVAVTSVCWSPK-----------GKQLAVGKQ-NGTV 216 (434)
T ss_dssp GSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEE-EEEEECGGGCEEEEEECTT-----------SSCEEEEET-TSCE
T ss_pred CceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcc-eeeccCCCCceeEEEEcCC-----------CCEEEEEcC-CCcE
Confidence 4677777763 344445 588899988875421 1222233567999998762 457889986 9999
Q ss_pred EEEeCC
Q psy7977 383 RLLSLP 388 (1225)
Q Consensus 383 ~IlsL~ 388 (1225)
++|++.
T Consensus 217 ~iwd~~ 222 (434)
T 2oit_A 217 VQYLPT 222 (434)
T ss_dssp EEECTT
T ss_pred EEEccC
Confidence 999987
No 166
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=68.29 E-value=1e+02 Score=32.98 Aligned_cols=160 Identities=10% Similarity=0.076 Sum_probs=84.4
Q ss_pred EEEEEEECCC--CcEEEEEECCCCCceEEEEEEEecCCCCeEEEEEeeeeCCCCCCCcceEEEEEEEeCCcEEEEEEEEe
Q psy7977 1005 HNLLIIDQNT--FEILHAHQLFPGEYALSLISSKFGEDPNTYFVLGTAVVHPEENEPKQGRIIIFHYDDGKLQQIAEKEI 1082 (1225)
Q Consensus 1005 s~irlvdp~t--~~~i~~~eL~~nE~~~si~~v~~~~~~~~~lvVGTa~~~~eed~~~~GrI~vf~i~~~kL~lv~~~ev 1082 (1225)
+.+..+|+.+ |+.+.. +...-...+++ .+ +..++++|-.. .......+++|+...++.+.+...+.
T Consensus 128 ~~~~~~d~~~~~W~~~~~--~p~~r~~~~~~--~~---~~~iyv~GG~~-----~~~~~~~~~~~d~~~~~W~~~~~~p~ 195 (301)
T 2vpj_A 128 TSMERYDPNIDQWSMLGD--MQTAREGAGLV--VA---SGVIYCLGGYD-----GLNILNSVEKYDPHTGHWTNVTPMAT 195 (301)
T ss_dssp CEEEEEETTTTEEEEEEE--CSSCCBSCEEE--EE---TTEEEEECCBC-----SSCBCCCEEEEETTTTEEEEECCCSS
T ss_pred ceEEEEcCCCCeEEECCC--CCCCcccceEE--EE---CCEEEEECCCC-----CCcccceEEEEeCCCCcEEeCCCCCc
Confidence 5788899876 666654 33222222332 23 23577777421 12234567888877766666643333
Q ss_pred cCceeeeccccCeEEEEeC-------CEEEEEEcCCCceeeeeecccceeEEEEEEEECCE-EEEeeccc---cEEEEEE
Q psy7977 1083 KGACYSMCEFNGKLLASIN-------STVRLFEWTNEKELRLECSHFNNIIALFLKVKGDF-ILVGDLMR---SLTLLQY 1151 (1225)
Q Consensus 1083 ~G~v~al~~f~G~LLa~vg-------~~l~vy~l~~~~~L~~e~~~~~~~i~~~l~~~g~~-IlvGD~~k---Sv~~l~y 1151 (1225)
.-.-.+++.++|+|++.=| +.+.+|++..++--.......+.. .....+.++. +++|-.-. .-.+..|
T Consensus 196 ~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~-~~~~~~~~~~i~v~GG~~~~~~~~~v~~y 274 (301)
T 2vpj_A 196 KRSGAGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRC-YVGATVLRGRLYAIAGYDGNSLLSSIECY 274 (301)
T ss_dssp CCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCB-SCEEEEETTEEEEECCBCSSSBEEEEEEE
T ss_pred ccccceEEEECCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCccc-ceeEEEECCEEEEEcCcCCCcccccEEEE
Confidence 2223344556787766433 468888887655322211111111 0112233554 45554321 2456788
Q ss_pred ecCCCeEEEEeccCCCceeEEEEeee
Q psy7977 1152 KTMEGSFEEISRDYNPNWMTSIEILD 1177 (1225)
Q Consensus 1152 ~~~~~~L~~~arD~~~~wvta~~~Ld 1177 (1225)
+.+.++-..+..-..+|.-.++..++
T Consensus 275 d~~~~~W~~~~~~~~~r~~~~~~~~~ 300 (301)
T 2vpj_A 275 DPIIDSWEVVTSMGTQRCDAGVCVLR 300 (301)
T ss_dssp ETTTTEEEEEEEEEEEEESCEEEEEE
T ss_pred cCCCCeEEEcCCCCcccccceEEEeC
Confidence 98888888877666666555555543
No 167
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=67.73 E-value=58 Score=37.64 Aligned_cols=132 Identities=19% Similarity=0.119 Sum_probs=74.3
Q ss_pred CeEEEEccCcEEEEecCCcc---------eeeeecCCCCCcEEEEEecCCEEEEEECCeEEEEEeeccceeEEeeeccCc
Q psy7977 277 RTVLQVTPSAAILISTESKA---------RVSSWEPPNGKSISVVSCNKNQVLCATGCDVYYLEVHGSEIKQLAHRALEY 347 (1225)
Q Consensus 277 ~~iVQVT~~~IRli~~~~~~---------~i~eW~~p~g~~Iv~As~n~~~VlVasgg~Lv~feid~~~L~ev~~~~l~~ 347 (1225)
+.++--.++++++.+.+..+ .-..+..+-.. |.+-++.+.+++++.++.|.+|++..-. .......+..
T Consensus 50 gll~a~~~~~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~fd~~~L~v~~~~~l~v~dv~sl~-~~~~~~~~~~ 127 (388)
T 1xip_A 50 SLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCFHGDQVLVSTRNALYSLDLEELS-EFRTVTSFEK 127 (388)
T ss_dssp TEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEEETTEEEEEESSEEEEEESSSTT-CEEEEEECSS
T ss_pred CEEEEeCCCEEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEECCCEEEEEcCCcEEEEEchhhh-ccCccceeec
Confidence 45555666677666543211 00112222223 7777777777877888899999886431 1111223334
Q ss_pred eeEEEEeccCCCCCCCCccccCcEEEEEEecCCeEEEEeCCCcceEEeecCCCCCCcccEEEEeeCCeeEEEEEECCCcE
Q psy7977 348 EVACLDISPLSNEETSSEPAKAQLAAVGLWTDISARLLSLPSLEEVCKEPLGGEIIPRSILMTCFEGHCYLLVALGDGSM 427 (1225)
Q Consensus 348 eIScLai~~~~~~~~~~~~~~s~~laVG~w~d~tv~IlsL~~Le~v~~~~L~~~~~P~SIll~~l~~~~~LlVGl~nG~L 427 (1225)
.+.++.. . ..+ +++++. ||+|.++++.+..... +. .-.++++... ++ +.+|..||.+
T Consensus 128 ~v~~i~~--~----------~p~-~av~~~-dG~L~v~dl~~~~~~~---~~--~~Vs~v~WSp--kG--~~vg~~dg~i 184 (388)
T 1xip_A 128 PVFQLKN--V----------NNT-LVILNS-VNDLSALDLRTKSTKQ---LA--QNVTSFDVTN--SQ--LAVLLKDRSF 184 (388)
T ss_dssp CEEEEEE--C----------SSE-EEEEET-TSEEEEEETTTCCEEE---EE--ESEEEEEECS--SE--EEEEETTSCE
T ss_pred ceeeEEe--c----------CCC-EEEEEC-CCCEEEEEccCCcccc---cc--CCceEEEEcC--Cc--eEEEEcCCcE
Confidence 4554432 2 112 677765 9999999998544321 11 1123344332 23 7899999999
Q ss_pred EEEEEc
Q psy7977 428 FYFSLD 433 (1225)
Q Consensus 428 ~~y~ld 433 (1225)
..|..+
T Consensus 185 ~~~~~~ 190 (388)
T 1xip_A 185 QSFAWR 190 (388)
T ss_dssp EEEEEE
T ss_pred EEEcCC
Confidence 999765
No 168
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=67.64 E-value=2e+02 Score=34.03 Aligned_cols=88 Identities=19% Similarity=0.220 Sum_probs=57.0
Q ss_pred CcEEEEEEecCCeEEEEeCCC---cceEEeecCCCC-------------CCcccEEEEeeCCeeEEEEEE----------
Q psy7977 369 AQLAAVGLWTDISARLLSLPS---LEEVCKEPLGGE-------------IIPRSILMTCFEGHCYLLVAL---------- 422 (1225)
Q Consensus 369 s~~laVG~w~d~tv~IlsL~~---Le~v~~~~L~~~-------------~~P~SIll~~l~~~~~LlVGl---------- 422 (1225)
.+++.|+.|..++|.+|.+.+ ++.+....+.+. .-|+.+.+.. ..-+|+|..
T Consensus 332 GrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSp--DGk~LyVaNsl~~~wd~Qf 409 (462)
T 2ece_A 332 DKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISR--DGRRVYVTNSLYSTWDNQF 409 (462)
T ss_dssp SCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECT--TSSEEEEECCCCHHHHHHH
T ss_pred CCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcC--CCCEEEEEcCCcccccccc
Confidence 579999999999999999852 444444444321 1388877653 345788888
Q ss_pred ----CCCcEEEEEEcCCCCccccceeee--ecCccceEEEEeeCC
Q psy7977 423 ----GDGSMFYFSLDPASGRLTDKKKVT--LGTQPTVLKTFRSLS 461 (1225)
Q Consensus 423 ----~nG~L~~y~ld~~sg~Ls~~k~~~--LG~~pV~L~~~~~~g 461 (1225)
.++.++.+.+|+.+| |+..+..+ +|. .+-+..+..|
T Consensus 410 yp~~~~~~~~~~~vd~~~G-L~~~~~f~vdf~~--~~~h~~r~~g 451 (462)
T 2ece_A 410 YPEGLKGWMVKLNANPSGG-LEIDKEFFVDFGE--ARSHQVRLSG 451 (462)
T ss_dssp STTCCCCEEEEEEECTTSC-EEEEEEEEEECTT--SEEEEEEETT
T ss_pred cCCCCceEEEEEEecCCCC-ceeCCCEEeeccc--CcceeeecCC
Confidence 456677678899999 87544322 343 4445444444
No 169
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=64.77 E-value=1.4e+02 Score=31.85 Aligned_cols=167 Identities=10% Similarity=0.077 Sum_probs=87.5
Q ss_pred EEEEEEECCC--CcEEEEEECCCCCceEEEEEEEecCCCCeEEEEEeeeeCCCCCCCcceEEEEEEEeCCcEEEEEEEEe
Q psy7977 1005 HNLLIIDQNT--FEILHAHQLFPGEYALSLISSKFGEDPNTYFVLGTAVVHPEENEPKQGRIIIFHYDDGKLQQIAEKEI 1082 (1225)
Q Consensus 1005 s~irlvdp~t--~~~i~~~eL~~nE~~~si~~v~~~~~~~~~lvVGTa~~~~eed~~~~GrI~vf~i~~~kL~lv~~~ev 1082 (1225)
..+..+|+.+ |+.+.. +...-...+++ .+ +..++++|-.. .......+.+|+...++.+.+...+.
T Consensus 77 ~~~~~~d~~~~~W~~~~~--~p~~r~~~~~~--~~---~~~iyv~GG~~-----~~~~~~~~~~~d~~~~~W~~~~~~p~ 144 (302)
T 2xn4_A 77 RTVDSYDPVKDQWTSVAN--MRDRRSTLGAA--VL---NGLLYAVGGFD-----GSTGLSSVEAYNIKSNEWFHVAPMNT 144 (302)
T ss_dssp CCEEEEETTTTEEEEECC--CSSCCBSCEEE--EE---TTEEEEEEEEC-----SSCEEEEEEEEETTTTEEEEECCCSS
T ss_pred cceEEECCCCCceeeCCC--CCccccceEEE--EE---CCEEEEEcCCC-----CCccCceEEEEeCCCCeEeecCCCCC
Confidence 3577889876 555543 33222222332 23 23566777431 11234567777776666666544333
Q ss_pred cCceeeeccccCeEEEEeC---------CEEEEEEcCCCceeeeeecccceeEEEEEEEECC-EEEEeeccc---cEEEE
Q psy7977 1083 KGACYSMCEFNGKLLASIN---------STVRLFEWTNEKELRLECSHFNNIIALFLKVKGD-FILVGDLMR---SLTLL 1149 (1225)
Q Consensus 1083 ~G~v~al~~f~G~LLa~vg---------~~l~vy~l~~~~~L~~e~~~~~~~i~~~l~~~g~-~IlvGD~~k---Sv~~l 1149 (1225)
.-.-.+++.++|+|.+.=| +.+.+|++..++--.......+.. ...+.+.++ .+++|-.-. .-.+.
T Consensus 145 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~-~~~~~~~~~~iyv~GG~~~~~~~~~~~ 223 (302)
T 2xn4_A 145 RRSSVGVGVVGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRS-GAGVGVLNNLLYAVGGHDGPLVRKSVE 223 (302)
T ss_dssp CCBSCEEEEETTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCB-SCEEEEETTEEEEECCBSSSSBCCCEE
T ss_pred cccCceEEEECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccc-cccEEEECCEEEEECCCCCCcccceEE
Confidence 2223344556787766422 357788887654222111111111 011223355 445553211 22467
Q ss_pred EEecCCCeEEEEeccCCCceeEEEEeeeCCcEEEE
Q psy7977 1150 QYKTMEGSFEEISRDYNPNWMTSIEILDDELFLGA 1184 (1225)
Q Consensus 1150 ~y~~~~~~L~~~arD~~~~wvta~~~Ld~dt~l~a 1184 (1225)
.|+.+.++-..++.-..+|.-.++..++..-++.+
T Consensus 224 ~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~i~v~G 258 (302)
T 2xn4_A 224 VYDPTTNAWRQVADMNMCRRNAGVCAVNGLLYVVG 258 (302)
T ss_dssp EEETTTTEEEEECCCSSCCBSCEEEEETTEEEEEC
T ss_pred EEeCCCCCEeeCCCCCCccccCeEEEECCEEEEEC
Confidence 89999999999988777887666666665544443
No 170
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=63.64 E-value=1.5e+02 Score=31.08 Aligned_cols=234 Identities=9% Similarity=0.065 Sum_probs=111.2
Q ss_pred cCcceeEEEecCCeEEEEeecCCeEEEEEeeCCCCCCCceEEEeeeec-------cccceeeEEeeccccCCccEEEEEe
Q psy7977 119 ISIPECLTYLDNGVVFVGSRLGDSQLVKLNRSPDENGTYVSVMESFTN-------LAPIIDMVVVDLERQGQGQLVTCSG 191 (1225)
Q Consensus 119 is~~SsL~~L~~g~LFvGS~~GDS~L~~i~~~~ddd~~~l~v~d~l~N-------lgPI~D~~v~d~~~~~~~qLva~sG 191 (1225)
...|.+++.-.+|.+|++.. +++.+..|...+ ..+..+.. .....++++.+ ...+|+++..
T Consensus 29 ~~~p~~v~~~~~g~l~v~~~-~~~~i~~~d~~g-------~~~~~~~~~~~~~~~~~~p~~i~~~~----~~g~l~v~~~ 96 (286)
T 1q7f_A 29 FTEPSGVAVNAQNDIIVADT-NNHRIQIFDKEG-------RFKFQFGECGKRDSQLLYPNRVAVVR----NSGDIIVTER 96 (286)
T ss_dssp BSCEEEEEECTTCCEEEEEG-GGTEEEEECTTS-------CEEEEECCBSSSTTCBSSEEEEEEET----TTTEEEEEEC
T ss_pred cCCCceEEECCCCCEEEEEC-CCCEEEEECCCC-------cEEEEecccCCCcccccCceEEEEEc----CCCeEEEEcC
Confidence 45678888877888888754 456788886543 12233322 12234555522 2346776653
Q ss_pred cCCCccEEEEeecceeeEEEEeeCCCcceEeEeeeCCCCCCccEEEEEcCCceEEEEEc--Cceeeeecc-CCcccccCe
Q psy7977 192 GFKEGSLRIIRNGIGIEEHACIDLPGIKGIWALSIGSPKNLDNTLVLSFVGHTRVLTLS--GAEVEETEM-GGFTSDQQT 268 (1225)
Q Consensus 192 ~g~~GsLrilR~GI~~~~~~s~eLpgv~~iWtl~~~~~~~~d~yLVlSf~~~T~Vl~i~--ge~veEv~~-sgF~~~~~T 268 (1225)
. .++.+.++... -+.+..+..+.....+.+.... ... ++++......|+.++ ++.+..... ..+. .+
T Consensus 97 ~-~~~~i~~~d~~--g~~~~~~~~~~~~~~~~i~~~~---~g~-l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~--~p- 166 (286)
T 1q7f_A 97 S-PTHQIQIYNQY--GQFVRKFGATILQHPRGVTVDN---KGR-IIVVECKVMRVIIFDQNGNVLHKFGCSKHLE--FP- 166 (286)
T ss_dssp G-GGCEEEEECTT--SCEEEEECTTTCSCEEEEEECT---TSC-EEEEETTTTEEEEECTTSCEEEEEECTTTCS--SE-
T ss_pred C-CCCEEEEECCC--CcEEEEecCccCCCceEEEEeC---CCC-EEEEECCCCEEEEEcCCCCEEEEeCCCCccC--Cc-
Confidence 2 34567666522 2233334333333444444432 123 444433334455554 222332221 1111 01
Q ss_pred EEEEeeCCCeEEEEc---cCcEEEEecCCcceeeeecCCCC-CcEEEEEe-cCCEEEEE-E-CC-eEEEEEeeccceeEE
Q psy7977 269 FYCGNVDPRTVLQVT---PSAAILISTESKARVSSWEPPNG-KSISVVSC-NKNQVLCA-T-GC-DVYYLEVHGSEIKQL 340 (1225)
Q Consensus 269 L~ag~l~~~~iVQVT---~~~IRli~~~~~~~i~eW~~p~g-~~Iv~As~-n~~~VlVa-s-gg-~Lv~feid~~~L~ev 340 (1225)
-.+..-.++.+. |+ .+.|+.++.+. +.+..+..+.. ..+...++ .+..++++ . ++ .|..|..+...+..+
T Consensus 167 ~~i~~~~~g~l~-v~~~~~~~i~~~~~~g-~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g~~~~~~ 244 (286)
T 1q7f_A 167 NGVVVNDKQEIF-ISDNRAHCVKVFNYEG-QYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDGQLISAL 244 (286)
T ss_dssp EEEEECSSSEEE-EEEGGGTEEEEEETTC-CEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTSCEEEEE
T ss_pred EEEEECCCCCEE-EEECCCCEEEEEcCCC-CEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCCCCEEEEE
Confidence 011111233322 22 34677777653 44455543321 23444444 35577777 3 43 788886432223333
Q ss_pred eeeccCceeEEEEeccCCCCCCCCccccCcEEEEEEecCCeEEEEeCCC
Q psy7977 341 AHRALEYEVACLDISPLSNEETSSEPAKAQLAAVGLWTDISARLLSLPS 389 (1225)
Q Consensus 341 ~~~~l~~eIScLai~~~~~~~~~~~~~~s~~laVG~w~d~tv~IlsL~~ 389 (1225)
....-...+.++++.+- . .++|..+ +++|++|.+..
T Consensus 245 ~~~~~~~~~~~i~~~~~-----------g-~l~vs~~-~~~v~v~~~~~ 280 (286)
T 1q7f_A 245 ESKVKHAQCFDVALMDD-----------G-SVVLASK-DYRLYIYRYVQ 280 (286)
T ss_dssp EESSCCSCEEEEEEETT-----------T-EEEEEET-TTEEEEEECSC
T ss_pred cccCCCCcceeEEECCC-----------C-cEEEECC-CCeEEEEEccc
Confidence 22111123556777541 2 2556665 99999998854
No 171
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=61.03 E-value=1.4e+02 Score=35.66 Aligned_cols=167 Identities=13% Similarity=0.104 Sum_probs=86.8
Q ss_pred CCceEEEEEEEecCCC-----CeEEEEEeeeeCCC---------CCCCcceEEEEEEEeCCcEEE--EEEEE-ecCceee
Q psy7977 1026 GEYALSLISSKFGEDP-----NTYFVLGTAVVHPE---------ENEPKQGRIIIFHYDDGKLQQ--IAEKE-IKGACYS 1088 (1225)
Q Consensus 1026 nE~~~si~~v~~~~~~-----~~~lvVGTa~~~~e---------ed~~~~GrI~vf~i~~~kL~l--v~~~e-v~G~v~a 1088 (1225)
+..+.||+-+.-..+. ..|++||+.....+ -....-|.|.+|++..+++.. ..... -.|.|.+
T Consensus 133 ~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~ 212 (524)
T 2j04_B 133 GGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWD 212 (524)
T ss_dssp CC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCCEEEEEEEEECCCSEEE
T ss_pred CCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEE
Confidence 4556666555443122 27999998541110 012356889999998764322 11111 2477887
Q ss_pred eccc-------cCeEEEEeC--CEEEEEEcCCCcee-----e-----eeecccceeEEEEEEE-ECCEEEEeeccccEEE
Q psy7977 1089 MCEF-------NGKLLASIN--STVRLFEWTNEKEL-----R-----LECSHFNNIIALFLKV-KGDFILVGDLMRSLTL 1148 (1225)
Q Consensus 1089 l~~f-------~G~LLa~vg--~~l~vy~l~~~~~L-----~-----~e~~~~~~~i~~~l~~-~g~~IlvGD~~kSv~~ 1148 (1225)
++=. +|.+||+.+ .+|++|++...+.. . ......... +..+.- .+++|+.|..=..|.+
T Consensus 213 v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~-v~sv~~s~~~~lasgs~DgtV~l 291 (524)
T 2j04_B 213 LKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSL-ITTFDFLSPTTVVCGFKNGFVAE 291 (524)
T ss_dssp EEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTC-EEEEEESSSSEEEEEETTSEEEE
T ss_pred EEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCC-EEEEEecCCCeEEEEeCCCEEEE
Confidence 7622 145676544 68999999654311 0 001111112 244442 3568888887777766
Q ss_pred EEEecCCCeEEEEeccCCCceeEEEE--eeeCC--cEEEEcCCCcEEEEEe
Q psy7977 1149 LQYKTMEGSFEEISRDYNPNWMTSIE--ILDDE--LFLGAENSYNLFICQK 1195 (1225)
Q Consensus 1149 l~y~~~~~~L~~~arD~~~~wvta~~--~Ld~d--t~l~aD~~gNl~vl~~ 1195 (1225)
.-.+........+. .+..+|+++. +=.++ .++.+-.++.+.+...
T Consensus 292 WD~~~~~~~~~~~~--~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~ 340 (524)
T 2j04_B 292 FDLTDPEVPSFYDQ--VHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNP 340 (524)
T ss_dssp EETTBCSSCSEEEE--CSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECG
T ss_pred EECCCCCCceEEee--cccccEEEEEEEcCCCCCeEEEEeccCCeEEEEEC
Confidence 44332111122222 2456788774 33333 4788888898888765
No 172
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=60.37 E-value=2.7e+02 Score=32.97 Aligned_cols=60 Identities=8% Similarity=0.102 Sum_probs=37.1
Q ss_pred CCeEEEEeCCCcceEEeecCCC-CCCcccEEEEeeCCeeEEEEEE------CCCcEEEEEEcCCCCccc
Q psy7977 379 DISARLLSLPSLEEVCKEPLGG-EIIPRSILMTCFEGHCYLLVAL------GDGSMFYFSLDPASGRLT 440 (1225)
Q Consensus 379 d~tv~IlsL~~Le~v~~~~L~~-~~~P~SIll~~l~~~~~LlVGl------~nG~L~~y~ld~~sg~Ls 440 (1225)
+.+|.+|.+.+.+.+.+..++. ...|+.|.++--....+++|+. -++.+..|..+. |++.
T Consensus 227 ~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~--g~~~ 293 (462)
T 2ece_A 227 GNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYED--GKWN 293 (462)
T ss_dssp CCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEET--TEEE
T ss_pred CCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecC--Ccee
Confidence 6899999998755555445531 2456666653223455666666 466888877763 5443
No 173
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=57.30 E-value=2.1e+02 Score=30.81 Aligned_cols=176 Identities=12% Similarity=0.084 Sum_probs=107.0
Q ss_pred eEEEEEEECCCCcEEEEEECCCCCceEEEEEEEecCCCCeEEEEEeeeeCCCCCCCcceEEEEEEEeCCcEEEEEEEEec
Q psy7977 1004 VHNLLIIDQNTFEILHAHQLFPGEYALSLISSKFGEDPNTYFVLGTAVVHPEENEPKQGRIIIFHYDDGKLQQIAEKEIK 1083 (1225)
Q Consensus 1004 ~s~irlvdp~t~~~i~~~eL~~nE~~~si~~v~~~~~~~~~lvVGTa~~~~eed~~~~GrI~vf~i~~~kL~lv~~~ev~ 1083 (1225)
.|+|+.+|+.|.+++.++.++..-....++. . ++..++ .|- ..+++++|+.. .++++.+-+..
T Consensus 42 ~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~--~---~~~ly~-ltw---------~~~~v~v~D~~--tl~~~~ti~~~ 104 (243)
T 3mbr_X 42 RSSVRKVDLETGRILQRAEVPPPYFGAGIVA--W---RDRLIQ-LTW---------RNHEGFVYDLA--TLTPRARFRYP 104 (243)
T ss_dssp SCEEEEEETTTCCEEEEEECCTTCCEEEEEE--E---TTEEEE-EES---------SSSEEEEEETT--TTEEEEEEECS
T ss_pred CceEEEEECCCCCEEEEEeCCCCcceeEEEE--e---CCEEEE-EEe---------eCCEEEEEECC--cCcEEEEEeCC
Confidence 3799999999999999999987644444432 1 223333 342 14677777664 57777777777
Q ss_pred CceeeeccccCeEEEEeC-CEEEEEEcCCCceee---eeecccceeEEEEEEEECCEEEEeeccccEEEEEEecCCCeEE
Q psy7977 1084 GACYSMCEFNGKLLASIN-STVRLFEWTNEKELR---LECSHFNNIIALFLKVKGDFILVGDLMRSLTLLQYKTMEGSFE 1159 (1225)
Q Consensus 1084 G~v~al~~f~G~LLa~vg-~~l~vy~l~~~~~L~---~e~~~~~~~i~~~l~~~g~~IlvGD~~kSv~~l~y~~~~~~L~ 1159 (1225)
+...+||.-.++|.++-| .+|.++|-..-+.++ +....++.....-|...+++|++..-+.- .+++-+++..+.+
T Consensus 105 ~~Gwglt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~~G~lyanvw~s~-~I~vIDp~tG~V~ 183 (243)
T 3mbr_X 105 GEGWALTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWVNGELLANVWLTS-RIARIDPASGKVV 183 (243)
T ss_dssp SCCCEEEECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEEETTTT-EEEEECTTTCBEE
T ss_pred CCceEEeeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEeCCEEEEEECCCC-eEEEEECCCCCEE
Confidence 777888877778988866 577777776555554 21111221112345556888888876544 5777788776655
Q ss_pred EEec-----c------CCCceeEEEEeeeCC--c-EEEEcCCCcEEEEEeCC
Q psy7977 1160 EISR-----D------YNPNWMTSIEILDDE--L-FLGAENSYNLFICQKDS 1197 (1225)
Q Consensus 1160 ~~ar-----D------~~~~wvta~~~Ld~d--t-~l~aD~~gNl~vl~~~~ 1197 (1225)
..-+ + .....|...-..|.+ + |+.+=.--.||=.++.+
T Consensus 184 ~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~wp~~~~v~~~~ 235 (243)
T 3mbr_X 184 AWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKRWPMLYEIRLTP 235 (243)
T ss_dssp EEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETTCSEEEEEEECC
T ss_pred EEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECCCCCcEEEEEEec
Confidence 4432 1 112234444444432 3 55555556677666655
No 174
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=57.16 E-value=30 Score=40.14 Aligned_cols=112 Identities=16% Similarity=0.160 Sum_probs=65.2
Q ss_pred cEEEEEec--CCEEEE---E--ECCeEEEEEeecc-----ce----eEEee-eccCceeEEEEeccCCCCCCCCccccCc
Q psy7977 308 SISVVSCN--KNQVLC---A--TGCDVYYLEVHGS-----EI----KQLAH-RALEYEVACLDISPLSNEETSSEPAKAQ 370 (1225)
Q Consensus 308 ~Iv~As~n--~~~VlV---a--sgg~Lv~feid~~-----~L----~ev~~-~~l~~eIScLai~~~~~~~~~~~~~~s~ 370 (1225)
.|.+.+.+ +.++++ + .++.+.++++... +. ..... ..-...|.|++..+. ...
T Consensus 94 ~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~----------~~~ 163 (434)
T 2oit_A 94 PIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPT----------VPS 163 (434)
T ss_dssp CEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSS----------CTT
T ss_pred cccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCC----------CCC
Confidence 35554443 445555 3 2567888877532 11 11111 112567889998763 256
Q ss_pred EEEEEEecCCeEEEEeCCCcceEEeecCCCCCCcccEEEEeeCCeeEEEEEECCCcEEEEEEc
Q psy7977 371 LAAVGLWTDISARLLSLPSLEEVCKEPLGGEIIPRSILMTCFEGHCYLLVALGDGSMFYFSLD 433 (1225)
Q Consensus 371 ~laVG~w~d~tv~IlsL~~Le~v~~~~L~~~~~P~SIll~~l~~~~~LlVGl~nG~L~~y~ld 433 (1225)
+++.|.+ |++|++|++.+...+... .+....+.+++.. ....+|.+|..||.+..|...
T Consensus 164 ~las~s~-Dg~v~iwD~~~~~~~~~~-~~~~~~v~~v~ws--pdg~~lasgs~dg~v~iwd~~ 222 (434)
T 2oit_A 164 MVAVCLA-DGSIAVLQVTETVKVCAT-LPSTVAVTSVCWS--PKGKQLAVGKQNGTVVQYLPT 222 (434)
T ss_dssp EEEEEET-TSCEEEEEESSSEEEEEE-ECGGGCEEEEEEC--TTSSCEEEEETTSCEEEECTT
T ss_pred EEEEEEC-CCeEEEEEcCCCcceeec-cCCCCceeEEEEc--CCCCEEEEEcCCCcEEEEccC
Confidence 7888887 999999999764333211 1101122333332 245789999999999888654
No 175
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=56.74 E-value=1.9e+02 Score=30.20 Aligned_cols=130 Identities=10% Similarity=0.019 Sum_probs=69.9
Q ss_pred ceEEEEEEEeCCcEEEEEEEEecCceeeec--cccCeEEEEe----CCEEEEEEcCCCce--eeeeecccceeEEEEEEE
Q psy7977 1061 QGRIIIFHYDDGKLQQIAEKEIKGACYSMC--EFNGKLLASI----NSTVRLFEWTNEKE--LRLECSHFNNIIALFLKV 1132 (1225)
Q Consensus 1061 ~GrI~vf~i~~~kL~lv~~~ev~G~v~al~--~f~G~LLa~v----g~~l~vy~l~~~~~--L~~e~~~~~~~i~~~l~~ 1132 (1225)
.++|.+|+......+.+..... ..|..++ +-.|+|.++- +.+|..+++..... +.......|+- +.++.
T Consensus 100 ~~~I~~~~~~g~~~~~~~~~~~-~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~~~~~~~~~P~g--ia~d~ 176 (267)
T 1npe_A 100 LDRIEVAKMDGTQRRVLFDTGL-VNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNG--LTFDA 176 (267)
T ss_dssp TTEEEEEETTSCSCEEEECSSC-SSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEE--EEEET
T ss_pred CCEEEEEEcCCCCEEEEEECCC-CCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcEEEEECCCCCCcE--EEEcC
Confidence 4678887765433333322222 3455544 3368876664 35788888754331 11111123332 23333
Q ss_pred ECCEEEEeeccccEEEEEEecCCCeEEEEeccCCCceeEEEEeeeCCcEEEEcCCCcEEEEEeCCC
Q psy7977 1133 KGDFILVGDLMRSLTLLQYKTMEGSFEEISRDYNPNWMTSIEILDDELFLGAENSYNLFICQKDSA 1198 (1225)
Q Consensus 1133 ~g~~IlvGD~~kSv~~l~y~~~~~~L~~~arD~~~~wvta~~~Ld~dt~l~aD~~gNl~vl~~~~~ 1198 (1225)
.+++++++|.... .+.+|+.+......+.... .+..+++ +|.+.+.++|...| .|.+++++
T Consensus 177 ~~~~lyv~d~~~~-~I~~~~~~g~~~~~~~~~~--~~P~gi~-~d~~~lyva~~~~~-~v~~~d~~ 237 (267)
T 1npe_A 177 FSSQLCWVDAGTH-RAECLNPAQPGRRKVLEGL--QYPFAVT-SYGKNLYYTDWKTN-SVIAMDLA 237 (267)
T ss_dssp TTTEEEEEETTTT-EEEEEETTEEEEEEEEECC--CSEEEEE-EETTEEEEEETTTT-EEEEEETT
T ss_pred CCCEEEEEECCCC-EEEEEecCCCceEEEecCC--CCceEEE-EeCCEEEEEECCCC-eEEEEeCC
Confidence 4789999998764 2455666555555554432 2334444 47778888887654 34555554
No 176
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=55.33 E-value=2e+02 Score=29.86 Aligned_cols=168 Identities=11% Similarity=0.026 Sum_probs=88.6
Q ss_pred EEEEEECCCCcEEEEEECC-CCCceEEEEEEEecCCCCeEEEEEeeeeCCCCCCCcceEEEEEEEeCCcEEEEEEEEecC
Q psy7977 1006 NLLIIDQNTFEILHAHQLF-PGEYALSLISSKFGEDPNTYFVLGTAVVHPEENEPKQGRIIIFHYDDGKLQQIAEKEIKG 1084 (1225)
Q Consensus 1006 ~irlvdp~t~~~i~~~eL~-~nE~~~si~~v~~~~~~~~~lvVGTa~~~~eed~~~~GrI~vf~i~~~kL~lv~~~ev~G 1084 (1225)
.|..+|+ +.+.. .+.+. ....+.+++ +..++ .+++ ++. ..|.|+.|+. +++++.+....-..
T Consensus 121 ~i~~~d~-~g~~~-~~~~~~~~~~~~~i~---~~~~g-~l~v-~~~---------~~~~i~~~~~-~g~~~~~~~~~~~~ 183 (299)
T 2z2n_A 121 RIGRITD-DGKIR-EYELPNKGSYPSFIT---LGSDN-ALWF-TEN---------QNNAIGRITE-SGDITEFKIPTPAS 183 (299)
T ss_dssp EEEEECT-TCCEE-EEECSSTTCCEEEEE---ECTTS-CEEE-EET---------TTTEEEEECT-TCCEEEEECSSTTC
T ss_pred eEEEECC-CCCEE-EecCCCCCCCCceEE---EcCCC-CEEE-EeC---------CCCEEEEEcC-CCcEEEeeCCCCCC
Confidence 5778888 44332 33333 233444443 33333 3333 321 2356777766 55554331111123
Q ss_pred ceeeeccc-cCeEEEEe--CCEEEEEEcCCCceeeeeecccceeEEEEEEEE-CCEEEEeeccccEEEEEEecCCCeEEE
Q psy7977 1085 ACYSMCEF-NGKLLASI--NSTVRLFEWTNEKELRLECSHFNNIIALFLKVK-GDFILVGDLMRSLTLLQYKTMEGSFEE 1160 (1225)
Q Consensus 1085 ~v~al~~f-~G~LLa~v--g~~l~vy~l~~~~~L~~e~~~~~~~i~~~l~~~-g~~IlvGD~~kSv~~l~y~~~~~~L~~ 1160 (1225)
.+.+++.- +|+|.++- +..|.+|+. ..+........-... +..+... .+.+++++...+ .+.+|++ ..++..
T Consensus 184 ~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~-~~~i~~~~~g~l~v~~~~~~-~i~~~d~-~g~~~~ 259 (299)
T 2z2n_A 184 GPVGITKGNDDALWFVEIIGNKIGRITT-SGEITEFKIPTPNAR-PHAITAGAGIDLWFTEWGAN-KIGRLTS-NNIIEE 259 (299)
T ss_dssp CEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCC-EEEEEECSTTCEEEEETTTT-EEEEEET-TTEEEE
T ss_pred cceeEEECCCCCEEEEccCCceEEEECC-CCcEEEEECCCCCCC-ceeEEECCCCCEEEeccCCc-eEEEECC-CCceEE
Confidence 46666543 58888876 678988888 333222111111112 3444432 346888885432 2455676 467776
Q ss_pred EeccCCCceeEEEEeeeCCcEEEEcCCCcEEEEEe
Q psy7977 1161 ISRDYNPNWMTSIEILDDELFLGAENSYNLFICQK 1195 (1225)
Q Consensus 1161 ~arD~~~~wvta~~~Ld~dt~l~aD~~gNl~vl~~ 1195 (1225)
+.-......+.++.+ +++.+..++..+.+..+..
T Consensus 260 ~~~~~~~~~~~~i~~-~~g~l~v~~~~~~l~~~~~ 293 (299)
T 2z2n_A 260 YPIQIKSAEPHGICF-DGETIWFAMECDKIGKLTL 293 (299)
T ss_dssp EECSSSSCCEEEEEE-CSSCEEEEETTTEEEEEEE
T ss_pred EeCCCCCCccceEEe-cCCCEEEEecCCcEEEEEc
Confidence 643333456777777 7778777776666666544
No 177
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=55.32 E-value=65 Score=37.22 Aligned_cols=98 Identities=12% Similarity=0.047 Sum_probs=59.4
Q ss_pred ecCCEEEEE-ECCeEEEEEeeccc---------eeEEeeeccCceeEEEEeccCCCCCCCCccccCcEEEEEEecCCeEE
Q psy7977 314 CNKNQVLCA-TGCDVYYLEVHGSE---------IKQLAHRALEYEVACLDISPLSNEETSSEPAKAQLAAVGLWTDISAR 383 (1225)
Q Consensus 314 ~n~~~VlVa-sgg~Lv~feid~~~---------L~ev~~~~l~~eIScLai~~~~~~~~~~~~~~s~~laVG~w~d~tv~ 383 (1225)
.+..-++++ .+..++.+.+++-. +......+++. |++|++ . ..+++|+ . ++.|+
T Consensus 46 s~~~gll~a~~~~~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f-d------------~~~L~v~-~-~~~l~ 109 (388)
T 1xip_A 46 SNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF-H------------GDQVLVS-T-RNALY 109 (388)
T ss_dssp ETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE-E------------TTEEEEE-E-SSEEE
T ss_pred cCCCCEEEEeCCCEEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE-C------------CCEEEEE-c-CCcEE
Confidence 334444444 66677766654211 22222345677 888888 2 4689999 4 89999
Q ss_pred EEeCCCcceEEee-cCCCCCCcccEEEEeeCCeeEEEEEECCCcEEEEEEc
Q psy7977 384 LLSLPSLEEVCKE-PLGGEIIPRSILMTCFEGHCYLLVALGDGSMFYFSLD 433 (1225)
Q Consensus 384 IlsL~~Le~v~~~-~L~~~~~P~SIll~~l~~~~~LlVGl~nG~L~~y~ld 433 (1225)
+|+++++.....+ ... ....++ ..+. +.+.+.+.||.|..+.+.
T Consensus 110 v~dv~sl~~~~~~~~~~--~~v~~i--~~~~--p~~av~~~dG~L~v~dl~ 154 (388)
T 1xip_A 110 SLDLEELSEFRTVTSFE--KPVFQL--KNVN--NTLVILNSVNDLSALDLR 154 (388)
T ss_dssp EEESSSTTCEEEEEECS--SCEEEE--EECS--SEEEEEETTSEEEEEETT
T ss_pred EEEchhhhccCccceee--cceeeE--EecC--CCEEEEECCCCEEEEEcc
Confidence 9999987654433 221 111122 1222 348888999999999875
No 178
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=54.36 E-value=2.9e+02 Score=31.52 Aligned_cols=172 Identities=10% Similarity=0.103 Sum_probs=97.7
Q ss_pred EEEEEEEC-CCCcEEEEEECCCC-CceEEEEEEEecCCCCeEEEEEeeeeCCCCCCCcceEEEEEEEeCCc-EEEEEEE-
Q psy7977 1005 HNLLIIDQ-NTFEILHAHQLFPG-EYALSLISSKFGEDPNTYFVLGTAVVHPEENEPKQGRIIIFHYDDGK-LQQIAEK- 1080 (1225)
Q Consensus 1005 s~irlvdp-~t~~~i~~~eL~~n-E~~~si~~v~~~~~~~~~lvVGTa~~~~eed~~~~GrI~vf~i~~~k-L~lv~~~- 1080 (1225)
+.|++++. .+.+.+.++.+-.. +.+.++. +..+..++++=|. .-|.|.+|++..++ ++.++..
T Consensus 157 ~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs---~~~g~~~~LaSgS----------~D~TIkIWDl~TGk~l~tL~g~~ 223 (356)
T 2w18_A 157 QQVEVMTFAEDGGGKENQFLMPPEETILTFA---EVQGMQEALLGTT----------IMNNIVIWNLKTGQLLKKMHIDD 223 (356)
T ss_dssp CEEEEEEECTTSCEEEEEEECCCSSCEEEEE---EEETSTTEEEEEE----------TTSEEEEEETTTCCEEEEEECCC
T ss_pred CcEEEEEECCCCceeeeeccCCCceeeEEee---ccCCCCceEEEec----------CCCcEEEEECCCCcEEEEEcCCC
Confidence 57999998 44788877766544 4444433 2223456777654 13688999998764 3444311
Q ss_pred -EecCceeeeccc--cCeEEEEe--------------CCEEEEEEcCCCceeeeeecccc-----eeEEEEEEEECCEEE
Q psy7977 1081 -EIKGACYSMCEF--NGKLLASI--------------NSTVRLFEWTNEKELRLECSHFN-----NIIALFLKVKGDFIL 1138 (1225)
Q Consensus 1081 -ev~G~v~al~~f--~G~LLa~v--------------g~~l~vy~l~~~~~L~~e~~~~~-----~~i~~~l~~~g~~Il 1138 (1225)
.+. .+.++ .| +|+++++. -+++++|+....+.+..-...++ .+ +..+..+.+++
T Consensus 224 ~~v~-~v~~v-afSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~--lsg~~sg~~lA 299 (356)
T 2w18_A 224 SYQA-SVCHK-AYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRF--LEGDVKDHCAA 299 (356)
T ss_dssp ---C-CCEEE-EEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCE--EEEEEETTEEE
T ss_pred ccee-eeEEE-EECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCccee--EccccCCCEEE
Confidence 111 22211 23 67766432 26899999877665542111111 12 23333466777
Q ss_pred EeeccccEEEEEEecCCCeEEEEeccCCCceeEEEEeeeCC-cEEEEcCCCcEEEEEe
Q psy7977 1139 VGDLMRSLTLLQYKTMEGSFEEISRDYNPNWMTSIEILDDE-LFLGAENSYNLFICQK 1195 (1225)
Q Consensus 1139 vGD~~kSv~~l~y~~~~~~L~~~arD~~~~wvta~~~Ld~d-t~l~aD~~gNl~vl~~ 1195 (1225)
.|..=+.|.+ |+...+++...-+......++++.|=.++ +++.+-.++++.+.++
T Consensus 300 SgS~DgTIkI--WDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 300 AILTSGTIAI--WDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp EEETTSCEEE--EETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred EEcCCCcEEE--EECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 7766666666 66666665554444333333445665555 6778899999999875
No 179
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=53.71 E-value=78 Score=34.60 Aligned_cols=92 Identities=13% Similarity=0.067 Sum_probs=51.8
Q ss_pred EEEEEEcCCCceeeeee-cccceeEEEEEEEE-CCEEEEeeccccEEEEEEecCCC--eEEEEec-------cCCCceeE
Q psy7977 1103 TVRLFEWTNEKELRLEC-SHFNNIIALFLKVK-GDFILVGDLMRSLTLLQYKTMEG--SFEEISR-------DYNPNWMT 1171 (1225)
Q Consensus 1103 ~l~vy~l~~~~~L~~e~-~~~~~~i~~~l~~~-g~~IlvGD~~kSv~~l~y~~~~~--~L~~~ar-------D~~~~wvt 1171 (1225)
+|.+|+....+.++... ..+.. +..+... .+.++|+|.... .+.+|+.+.. .+..++. +..-.+..
T Consensus 70 ~i~~~d~~~g~~~~~~~~~~~~~--p~gia~d~~g~l~v~d~~~~-~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~ 146 (329)
T 3fvz_A 70 TILVIDPNNAEILQSSGKNLFYL--PHGLSIDTDGNYWVTDVALH-QVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPT 146 (329)
T ss_dssp CEEEECTTTCCEEEEECTTTCSS--EEEEEECTTSCEEEEETTTT-EEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEE
T ss_pred cEEEEECCCCeEEeccCCCccCC--ceEEEECCCCCEEEEECCCC-EEEEEeCCCCeEEEEEecccCCCCCCccccCCCc
Confidence 57788776555444211 11111 3334332 344889998765 3667887655 5666654 33344566
Q ss_pred EEEeee-CCcEEEEcCCCcEEEEEeCC
Q psy7977 1172 SIEILD-DELFLGAENSYNLFICQKDS 1197 (1225)
Q Consensus 1172 a~~~Ld-~dt~l~aD~~gNl~vl~~~~ 1197 (1225)
.+.+-. ++.++++|..+|=.|..+++
T Consensus 147 ~ia~~~~~g~lyv~d~~~~~~I~~~~~ 173 (329)
T 3fvz_A 147 DVAVEPSTGAVFVSDGYCNSRIVQFSP 173 (329)
T ss_dssp EEEECTTTCCEEEEECSSCCEEEEECT
T ss_pred EEEEeCCCCeEEEEeCCCCCeEEEEcC
Confidence 677654 56888999643434455554
No 180
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=52.77 E-value=2.5e+02 Score=30.24 Aligned_cols=185 Identities=10% Similarity=0.041 Sum_probs=94.2
Q ss_pred EEEEEECCCCcEEEEEECCCCCceEEEEEEEecCCCCeEEEEEeeeeCC-CCCCCcceEEEEEEEeCCcEEEEEEEEecC
Q psy7977 1006 NLLIIDQNTFEILHAHQLFPGEYALSLISSKFGEDPNTYFVLGTAVVHP-EENEPKQGRIIIFHYDDGKLQQIAEKEIKG 1084 (1225)
Q Consensus 1006 ~irlvdp~t~~~i~~~eL~~nE~~~si~~v~~~~~~~~~lvVGTa~~~~-eed~~~~GrI~vf~i~~~kL~lv~~~ev~G 1084 (1225)
.+..+||.+.+=.. ..++....-...+.+.+ +..++++|-....+ .........++.|+...++.+.+...+..-
T Consensus 14 ~~~~yd~~~~~W~~-~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r 89 (315)
T 4asc_A 14 GAVAYDPAANECYC-ASLSSQVPKNHVSLVTK---ENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPR 89 (315)
T ss_dssp EEEEEETTTTEEEE-EECCCCSCSSEEEEECT---TCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCE
T ss_pred ceEEECCCCCeEec-CCCCCCCCccceEEEEE---CCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcch
Confidence 57788988743221 45543211112222223 33566777543222 112334455777777666665543332221
Q ss_pred ceeeeccccCeEEEEeC----------CEEEEEEcCCCceeeeeec---ccceeEEEEEEEECCE-EEEeec----cccE
Q psy7977 1085 ACYSMCEFNGKLLASIN----------STVRLFEWTNEKELRLECS---HFNNIIALFLKVKGDF-ILVGDL----MRSL 1146 (1225)
Q Consensus 1085 ~v~al~~f~G~LLa~vg----------~~l~vy~l~~~~~L~~e~~---~~~~~i~~~l~~~g~~-IlvGD~----~kSv 1146 (1225)
.-.+++.++|+|.+.=| +.+.+|+...++--..... ...+. ..+.++. .++|-. ...-
T Consensus 90 ~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~----~~~~~~~iyv~GG~~~~~~~~~ 165 (315)
T 4asc_A 90 CLFGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHT----VLSHMDLVYVIGGKGSDRKCLN 165 (315)
T ss_dssp ESCEEEEETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCE----EEEETTEEEEECCBCTTSCBCC
T ss_pred hceeEEEECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCccccee----EEEECCEEEEEeCCCCCCcccc
Confidence 22344556777766544 3477888765542221111 11122 2234554 445533 1123
Q ss_pred EEEEEecCCCeEEEEeccCCCceeEEEEeeeCCc-EEEEcCCCc-E-EEEEeCCC
Q psy7977 1147 TLLQYKTMEGSFEEISRDYNPNWMTSIEILDDEL-FLGAENSYN-L-FICQKDSA 1198 (1225)
Q Consensus 1147 ~~l~y~~~~~~L~~~arD~~~~wvta~~~Ld~dt-~l~aD~~gN-l-~vl~~~~~ 1198 (1225)
.+..|+...++-..++.-..+|.-.++..++..- ++|+-...+ + -+..|+++
T Consensus 166 ~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~ 220 (315)
T 4asc_A 166 KMCVYDPKKFEWKELAPMQTARSLFGATVHDGRIIVAAGVTDTGLTSSAEVYSIT 220 (315)
T ss_dssp CEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEEEEECSSSEEEEEEEEETT
T ss_pred eEEEEeCCCCeEEECCCCCCchhceEEEEECCEEEEEeccCCCCccceEEEEECC
Confidence 4677999999999998777888877777776653 444432221 1 34556554
No 181
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=52.18 E-value=2e+02 Score=29.75 Aligned_cols=128 Identities=9% Similarity=0.031 Sum_probs=0.0
Q ss_pred ceEEEEEEEeCCcEEEEEEEEecCceeeeccc-cCeEEEEeC--CEEEEEEcCCCceeeeeecccceeEEEEEEEE-CCE
Q psy7977 1061 QGRIIIFHYDDGKLQQIAEKEIKGACYSMCEF-NGKLLASIN--STVRLFEWTNEKELRLECSHFNNIIALFLKVK-GDF 1136 (1225)
Q Consensus 1061 ~GrI~vf~i~~~kL~lv~~~ev~G~v~al~~f-~G~LLa~vg--~~l~vy~l~~~~~L~~e~~~~~~~i~~~l~~~-g~~ 1136 (1225)
.|+|..|+.. ++++.+....-...|.+|+.- +|+|.++-. ..|..|+.. .+............ +..+... ++.
T Consensus 40 ~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~-~~~i~~~~~g~ 116 (300)
T 2qc5_A 40 ANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFTEYPLPQPDSG-PYGITEGLNGD 116 (300)
T ss_dssp TTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCC-EEEEEECSTTC
T ss_pred CCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeEEecCCCCCCC-CccceECCCCC
Q ss_pred EEEeeccccEEEEEEecCCCeEEEEeccCCCceeEEEEeeeCCcEEEEcC-CCcEEEE
Q psy7977 1137 ILVGDLMRSLTLLQYKTMEGSFEEISRDYNPNWMTSIEILDDELFLGAEN-SYNLFIC 1193 (1225)
Q Consensus 1137 IlvGD~~kSv~~l~y~~~~~~L~~~arD~~~~wvta~~~Ld~dt~l~aD~-~gNl~vl 1193 (1225)
++++|...+ .+.+|+++ .++..+.-........++.+-.++.+.+++. .+.++.+
T Consensus 117 l~v~~~~~~-~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~ 172 (300)
T 2qc5_A 117 IWFTQLNGD-RIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRI 172 (300)
T ss_dssp EEEEETTTT-EEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEE
T ss_pred EEEEccCCC-eEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEE
No 182
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=51.13 E-value=1.6e+02 Score=32.00 Aligned_cols=132 Identities=11% Similarity=0.102 Sum_probs=71.4
Q ss_pred ceEEEEEEEeCCcEEEEEEEEecCceeeeccc-cCeEEEEe--CCEEEEEEcCCCc-eee-ee--------ecccceeEE
Q psy7977 1061 QGRIIIFHYDDGKLQQIAEKEIKGACYSMCEF-NGKLLASI--NSTVRLFEWTNEK-ELR-LE--------CSHFNNIIA 1127 (1225)
Q Consensus 1061 ~GrI~vf~i~~~kL~lv~~~ev~G~v~al~~f-~G~LLa~v--g~~l~vy~l~~~~-~L~-~e--------~~~~~~~i~ 1127 (1225)
.|+|++|+...+++........-..|..|+-- +|+|+++- +.+|++|+...+. .+. .. ...+. . +
T Consensus 68 ~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~-~-P 145 (329)
T 3fvz_A 68 EDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFC-Q-P 145 (329)
T ss_dssp SCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCS-S-E
T ss_pred CCcEEEEECCCCeEEeccCCCccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccC-C-C
Confidence 36788887765665321111111246666532 68887764 4788888875442 232 11 11111 2 4
Q ss_pred EEEEEE--CCEEEEeeccccEEEEEEecCCCeEEEEeccCC--------CceeEEEEeeeC-CcEEEEcCCCc-EEEEE
Q psy7977 1128 LFLKVK--GDFILVGDLMRSLTLLQYKTMEGSFEEISRDYN--------PNWMTSIEILDD-ELFLGAENSYN-LFICQ 1194 (1225)
Q Consensus 1128 ~~l~~~--g~~IlvGD~~kSv~~l~y~~~~~~L~~~arD~~--------~~wvta~~~Ld~-dt~l~aD~~gN-l~vl~ 1194 (1225)
..|... ++.++|.|....=.+.+|+++...+..++..-. -.+...+++=.+ +.+.++|...+ +.++.
T Consensus 146 ~~ia~~~~~g~lyv~d~~~~~~I~~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~ 224 (329)
T 3fvz_A 146 TDVAVEPSTGAVFVSDGYCNSRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFK 224 (329)
T ss_dssp EEEEECTTTCCEEEEECSSCCEEEEECTTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred cEEEEeCCCCeEEEEeCCCCCeEEEEcCCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEE
Confidence 556543 578999997433346677765555555543221 134555555444 57888886554 44443
No 183
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=50.73 E-value=1.8e+02 Score=31.06 Aligned_cols=165 Identities=12% Similarity=0.122 Sum_probs=85.2
Q ss_pred EEEEEECCC--CcEEEEEECCCCCceEEEEEEEecCCCCeEEEEEeeeeCCCCCCCcceEEEEEEEeCCcEEEEEEEEec
Q psy7977 1006 NLLIIDQNT--FEILHAHQLFPGEYALSLISSKFGEDPNTYFVLGTAVVHPEENEPKQGRIIIFHYDDGKLQQIAEKEIK 1083 (1225)
Q Consensus 1006 ~irlvdp~t--~~~i~~~eL~~nE~~~si~~v~~~~~~~~~lvVGTa~~~~eed~~~~GrI~vf~i~~~kL~lv~~~ev~ 1083 (1225)
.+..+|+.+ |+.+. .+...-...++ +.+ +..++++|-.. .......++.|+...++.+.+...+..
T Consensus 31 ~~~~~d~~~~~W~~~~--~~p~~r~~~~~--~~~---~~~lyv~GG~~-----~~~~~~~~~~~d~~~~~W~~~~~~p~~ 98 (302)
T 2xn4_A 31 SVECYDFKEERWHQVA--ELPSRRCRAGM--VYM---AGLVFAVGGFN-----GSLRVRTVDSYDPVKDQWTSVANMRDR 98 (302)
T ss_dssp CEEEEETTTTEEEEEC--CCSSCCBSCEE--EEE---TTEEEEESCBC-----SSSBCCCEEEEETTTTEEEEECCCSSC
T ss_pred cEEEEcCcCCcEeEcc--cCCcccccceE--EEE---CCEEEEEeCcC-----CCccccceEEECCCCCceeeCCCCCcc
Confidence 477888876 44443 33322222233 223 23577777421 112234577777766666665543332
Q ss_pred CceeeeccccCeEEEEeC-------CEEEEEEcCCCceeeeeecccceeEEEEEEEECCEEEE-eeccc-----cEEEEE
Q psy7977 1084 GACYSMCEFNGKLLASIN-------STVRLFEWTNEKELRLECSHFNNIIALFLKVKGDFILV-GDLMR-----SLTLLQ 1150 (1225)
Q Consensus 1084 G~v~al~~f~G~LLa~vg-------~~l~vy~l~~~~~L~~e~~~~~~~i~~~l~~~g~~Ilv-GD~~k-----Sv~~l~ 1150 (1225)
-.-.+++.++|+|.+.=| +.+.+|++..++--.......+.. .....+.++.|++ |-... .-.+..
T Consensus 99 r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~-~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~ 177 (302)
T 2xn4_A 99 RSTLGAAVLNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRS-SVGVGVVGGLLYAVGGYDVASRQCLSTVEC 177 (302)
T ss_dssp CBSCEEEEETTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCB-SCEEEEETTEEEEECCEETTTTEECCCEEE
T ss_pred ccceEEEEECCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCccc-CceEEEECCEEEEEeCCCCCCCccccEEEE
Confidence 223344556787655433 467788877654222111111110 0112234554444 42210 223567
Q ss_pred EecCCCeEEEEeccCCCceeEEEEeeeCCcEEE
Q psy7977 1151 YKTMEGSFEEISRDYNPNWMTSIEILDDELFLG 1183 (1225)
Q Consensus 1151 y~~~~~~L~~~arD~~~~wvta~~~Ld~dt~l~ 1183 (1225)
|+.+.++-..++.-..+|.-.++..++..-|+.
T Consensus 178 yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~ 210 (302)
T 2xn4_A 178 YNATTNEWTYIAEMSTRRSGAGVGVLNNLLYAV 210 (302)
T ss_dssp EETTTTEEEEECCCSSCCBSCEEEEETTEEEEE
T ss_pred EeCCCCcEEECCCCccccccccEEEECCEEEEE
Confidence 999999999998777788777777766554443
No 184
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=50.69 E-value=1.9e+02 Score=31.05 Aligned_cols=158 Identities=9% Similarity=0.119 Sum_probs=81.7
Q ss_pred EEEEEEECCC--CcEEEEEECCCCCceEEEEEEEecCCCCeEEEEEeeeeCCCCCCCcceEEEEEEEeCCcEEEEEEEEe
Q psy7977 1005 HNLLIIDQNT--FEILHAHQLFPGEYALSLISSKFGEDPNTYFVLGTAVVHPEENEPKQGRIIIFHYDDGKLQQIAEKEI 1082 (1225)
Q Consensus 1005 s~irlvdp~t--~~~i~~~eL~~nE~~~si~~v~~~~~~~~~lvVGTa~~~~eed~~~~GrI~vf~i~~~kL~lv~~~ev 1082 (1225)
..+..+|+.+ |+.+.. +...-...+++ .+ +..++++|-.. . ......+++|+...++.+.+...+.
T Consensus 137 ~~~~~yd~~~~~W~~~~~--~p~~r~~~~~~--~~---~~~iyv~GG~~--~---~~~~~~~~~yd~~~~~W~~~~~~p~ 204 (308)
T 1zgk_A 137 NSVERYEPERDEWHLVAP--MLTRRIGVGVA--VL---NRLLYAVGGFD--G---TNRLNSAECYYPERNEWRMITAMNT 204 (308)
T ss_dssp CCEEEEETTTTEEEECCC--CSSCCBSCEEE--EE---TTEEEEECCBC--S---SCBCCCEEEEETTTTEEEECCCCSS
T ss_pred ccEEEECCCCCeEeECCC--CCccccceEEE--EE---CCEEEEEeCCC--C---CCcCceEEEEeCCCCeEeeCCCCCC
Confidence 4577888875 555443 33222222332 23 24677777421 1 1124567888877666655543333
Q ss_pred cCceeeeccccCeEEEEeC-------CEEEEEEcCCCceeeeeecccceeEEEEEEEECCEE-EEeecc---ccEEEEEE
Q psy7977 1083 KGACYSMCEFNGKLLASIN-------STVRLFEWTNEKELRLECSHFNNIIALFLKVKGDFI-LVGDLM---RSLTLLQY 1151 (1225)
Q Consensus 1083 ~G~v~al~~f~G~LLa~vg-------~~l~vy~l~~~~~L~~e~~~~~~~i~~~l~~~g~~I-lvGD~~---kSv~~l~y 1151 (1225)
.-.-.+++.++|+|.+.=| +.+.+|++..++--.......+.. ...+.+.++.| ++|-.- ..-.+..|
T Consensus 205 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~-~~~~~~~~~~i~v~GG~~~~~~~~~v~~y 283 (308)
T 1zgk_A 205 IRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRS-ALGITVHQGRIYVLGGYDGHTFLDSVECY 283 (308)
T ss_dssp CCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCB-SCEEEEETTEEEEECCBCSSCBCCEEEEE
T ss_pred ccccceEEEECCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCcc-ceEEEEECCEEEEEcCcCCCcccceEEEE
Confidence 2223344556787765433 568888887654222111111111 01122345544 444321 12356678
Q ss_pred ecCCCeEEEEeccCCCceeEEEEe
Q psy7977 1152 KTMEGSFEEISRDYNPNWMTSIEI 1175 (1225)
Q Consensus 1152 ~~~~~~L~~~arD~~~~wvta~~~ 1175 (1225)
+.+.++-..++.-..+|.-.++..
T Consensus 284 d~~~~~W~~~~~~p~~r~~~~~~~ 307 (308)
T 1zgk_A 284 DPDTDTWSEVTRMTSGRSGVGVAV 307 (308)
T ss_dssp ETTTTEEEEEEECSSCCBSCEEEE
T ss_pred cCCCCEEeecCCCCCCcccceeEe
Confidence 998898888887777776555443
No 185
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=49.82 E-value=2.6e+02 Score=29.61 Aligned_cols=94 Identities=17% Similarity=0.238 Sum_probs=51.8
Q ss_pred CceeEEeeecceEEEEEeCCcceeEEeeccCC--CceeeeecCCeEEEEEcCCCEEEEEEEeCcccCCceeeeecEEEEe
Q psy7977 39 DNTLVLSFVGHTRVLTLSGAEWGFHLLRGFSS--LGSLWNGWSERYLLGDLAGRLFMLLLEKEEKMDGTFSVKEPKVELL 116 (1225)
Q Consensus 39 GG~Lv~~~vg~n~liyvDq~~~~~~~~~~l~~--~~~ifv~~~~~~LL~~e~G~Ly~l~l~~d~~~~Gr~~Vs~i~i~~~ 116 (1225)
+|.|. +|...|..+|..|+..- ..+... .....+. ++++++++.+|.|+.+... |+ .. .... .
T Consensus 70 ~g~l~---v~t~~l~~~d~~g~~~~-~~~~~~~~~~~~~~~-~~~l~v~t~~~~l~~~d~~------g~-~~--~~~~-~ 134 (330)
T 3hxj_A 70 DGTIY---FGSDKVYAINPDGTEKW-RFDTKKAIVSDFTIF-EDILYVTSMDGHLYAINTD------GT-EK--WRFK-T 134 (330)
T ss_dssp TTEEC---CSSCEEEEECCCGGGGG-GSCC-----CCEEEE-TTEEEEECTTSEEEEECTT------SC-EE--EEEE-C
T ss_pred CCcEE---EecCcEEEECCCCcEEE-EEECCCCcccCceEE-CCEEEEEecCCEEEEEcCC------CC-EE--EEEc-C
Confidence 67777 77666777887653321 111111 0111122 6788888888888876422 22 11 1111 1
Q ss_pred cccCcceeEEEecCCeEEEEeecCCeEEEEEeeC
Q psy7977 117 GEISIPECLTYLDNGVVFVGSRLGDSQLVKLNRS 150 (1225)
Q Consensus 117 ~tis~~SsL~~L~~g~LFvGS~~GDS~L~~i~~~ 150 (1225)
..+..+++..-.+|.+++|+. ++.|+.+...
T Consensus 135 -~~~~~~~~~~~~~g~l~vgt~--~~~l~~~d~~ 165 (330)
T 3hxj_A 135 -KKAIYATPIVSEDGTIYVGSN--DNYLYAINPD 165 (330)
T ss_dssp -SSCCCSCCEECTTSCEEEECT--TSEEEEECTT
T ss_pred -CCceeeeeEEcCCCEEEEEcC--CCEEEEECCC
Confidence 122335556666889999884 4678888764
No 186
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=49.82 E-value=2.7e+02 Score=29.75 Aligned_cols=132 Identities=10% Similarity=0.013 Sum_probs=72.9
Q ss_pred ceEEEEEEEeCCcEEEEEEEEecCceeeeccc-cCeEEEEeC------CEEEEEEcCCCceee-eeecccceeEEEEEEE
Q psy7977 1061 QGRIIIFHYDDGKLQQIAEKEIKGACYSMCEF-NGKLLASIN------STVRLFEWTNEKELR-LECSHFNNIIALFLKV 1132 (1225)
Q Consensus 1061 ~GrI~vf~i~~~kL~lv~~~ev~G~v~al~~f-~G~LLa~vg------~~l~vy~l~~~~~L~-~e~~~~~~~i~~~l~~ 1132 (1225)
.|.|++|+...++++.+.. ...+.|.+++.- +|+|+++.. ..|.+|+....+.-. ......... +..+..
T Consensus 65 ~~~i~~~d~~~~~~~~~~~-~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~-~~~i~~ 142 (333)
T 2dg1_A 65 EGNIFKINPETKEIKRPFV-SHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYC-IDDMVF 142 (333)
T ss_dssp TCEEEEECTTTCCEEEEEE-CSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCC-EEEEEE
T ss_pred CCEEEEEeCCCCcEEEEee-CCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCc-ccceEE
Confidence 4678888766566654432 334678887743 788877753 378888876554321 110111112 234433
Q ss_pred E-CCEEEEeeccc-----cEEEEEEecCCCeEEEEeccCCCceeEEEEeeeCC-cEEEEc-CCCcEEEEEeC
Q psy7977 1133 K-GDFILVGDLMR-----SLTLLQYKTMEGSFEEISRDYNPNWMTSIEILDDE-LFLGAE-NSYNLFICQKD 1196 (1225)
Q Consensus 1133 ~-g~~IlvGD~~k-----Sv~~l~y~~~~~~L~~~arD~~~~wvta~~~Ld~d-t~l~aD-~~gNl~vl~~~ 1196 (1225)
. .+.+++++... ...+.+|+.+..++..+..+.. +..++.+-.++ .+.++| ..+.|+++..+
T Consensus 143 d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~ 212 (333)
T 2dg1_A 143 DSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNIS--VANGIALSTDEKVLWVTETTANRLHRIALE 212 (333)
T ss_dssp CTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEES--SEEEEEECTTSSEEEEEEGGGTEEEEEEEC
T ss_pred CCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeecCCC--cccceEECCCCCEEEEEeCCCCeEEEEEec
Confidence 2 35678887642 4567788876666666543322 23444443343 344444 46778777764
No 187
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=49.67 E-value=4.3e+02 Score=32.17 Aligned_cols=183 Identities=10% Similarity=0.017 Sum_probs=91.9
Q ss_pred CceeEEEEeccCCCCCCCCccccCcEEEEEEecCCeEEEEeCCCcceEEeecCCCCCCc-ccEEEEee-CCeeEEEEEEC
Q psy7977 346 EYEVACLDISPLSNEETSSEPAKAQLAAVGLWTDISARLLSLPSLEEVCKEPLGGEIIP-RSILMTCF-EGHCYLLVALG 423 (1225)
Q Consensus 346 ~~eIScLai~~~~~~~~~~~~~~s~~laVG~w~d~tv~IlsL~~Le~v~~~~L~~~~~P-~SIll~~l-~~~~~LlVGl~ 423 (1225)
+..|.+++.+|. ...+|++.. ||+++||.... .+.... ....++ +++.-+.+ +++.+|.+|..
T Consensus 85 ~~~V~~vawSPd-----------G~~LAs~s~-dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~ 149 (588)
T 2j04_A 85 VCYPRVCKPSPI-----------DDWMAVLSN-NGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNE 149 (588)
T ss_dssp SCCEEEEEECSS-----------SSCEEEEET-TSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEET
T ss_pred CCcEEEEEECCC-----------CCEEEEEeC-CCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcC
Confidence 456888888762 467899997 99999999654 112111 111111 23332233 35678999999
Q ss_pred CCcEEEEEEcCCCCccccc---eeeee--cC----ccceEEEEeeCCceEEEEecCCcEEEEEc-CCeeE-----Eeecc
Q psy7977 424 DGSMFYFSLDPASGRLTDK---KKVTL--GT----QPTVLKTFRSLSTTNVFACSDRPTVIYSS-NHKLV-----FSNVN 488 (1225)
Q Consensus 424 nG~L~~y~ld~~sg~Ls~~---k~~~L--G~----~pV~L~~~~~~g~~~Vfa~sdrP~liyss-~g~l~-----~~pl~ 488 (1225)
||.+..|.+.. +.+... ....+ +. ..|.-..+..+| -+-+.+|+..-++.- .+... +.+..
T Consensus 150 DGtVkIWd~~~--~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h 225 (588)
T 2j04_A 150 DGELQFFSIRK--NSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNAS 225 (588)
T ss_dssp TSEEEEEECCC--CTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCC
T ss_pred CCEEEEEECCC--CccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecccc
Confidence 99999999764 333221 11111 11 133323333232 222233444333322 22211 11111
Q ss_pred cccccccccCCCCCCCCeEEEEeCCeEEEEEEcCCCCeeeEEEeCCCcccEEEE--ecCCCEEEEEE
Q psy7977 489 LRQVNHMCSLNAESYPDSLALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAY--QESSQTFGVIT 553 (1225)
Q Consensus 489 ~~~v~~~s~F~se~~p~glv~vs~~~LrI~~i~~~~~l~ir~IpLg~TprrIay--~p~s~~~vV~t 553 (1225)
...+.+ ..|+ ...++.+.++++++-.+........ +..=.....-+++ +|....++++.
T Consensus 226 ~~~V~s-vaFs----g~~LASa~~~tIkLWd~~~~~~~~~-~~gh~~~V~~va~~~s~d~~~La~a~ 286 (588)
T 2j04_A 226 RRKITD-LKIV----DYKVVLTCPGYVHKIDLKNYSISSL-KTGSLENFHIIPLNHEKESTILLMSN 286 (588)
T ss_dssp SSCCCC-EEEE----TTEEEEECSSEEEEEETTTTEEEEE-ECSCCSCCCEEEETTCSSCEEEEECS
T ss_pred cCcEEE-EEEE----CCEEEEEeCCeEEEEECCCCeEEEE-EcCCCceEEEEEeeeCCCCCEEEEEc
Confidence 111211 2243 2455556667788877654222122 2223356777888 77776665553
No 188
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=49.16 E-value=2.9e+02 Score=30.00 Aligned_cols=137 Identities=10% Similarity=0.027 Sum_probs=0.0
Q ss_pred EEEEEEECCCCcEEEEEECCCCCceEEEEEEEecCCCCeEEEEEeeeeCCCCCCCcceEEEEEEEeCCcEEEEEEEEec-
Q psy7977 1005 HNLLIIDQNTFEILHAHQLFPGEYALSLISSKFGEDPNTYFVLGTAVVHPEENEPKQGRIIIFHYDDGKLQQIAEKEIK- 1083 (1225)
Q Consensus 1005 s~irlvdp~t~~~i~~~eL~~nE~~~si~~v~~~~~~~~~lvVGTa~~~~eed~~~~GrI~vf~i~~~kL~lv~~~ev~- 1083 (1225)
+.|+.+|+.|.+++..+.++....+..++.. ...+.+.|-. .|++.+|+.. .++++.+-++.
T Consensus 44 s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~------g~~lyv~t~~---------~~~v~viD~~--t~~v~~~i~~g~ 106 (266)
T 2iwa_A 44 SSVRQVALQTGKVENIHKMDDSYFGEGLTLL------NEKLYQVVWL---------KNIGFIYDRR--TLSNIKNFTHQM 106 (266)
T ss_dssp CEEEEEETTTCCEEEEEECCTTCCEEEEEEE------TTEEEEEETT---------CSEEEEEETT--TTEEEEEEECCS
T ss_pred CEEEEEECCCCCEEEEEecCCCcceEEEEEe------CCEEEEEEec---------CCEEEEEECC--CCcEEEEEECCC
Q ss_pred CceeeeccccCeEEEEeC-CEEEEEEcCCCceee---eeecccceeEEEEEEEECCEEEEeeccccEEEEEEecCCCeEE
Q psy7977 1084 GACYSMCEFNGKLLASIN-STVRLFEWTNEKELR---LECSHFNNIIALFLKVKGDFILVGDLMRSLTLLQYKTMEGSFE 1159 (1225)
Q Consensus 1084 G~v~al~~f~G~LLa~vg-~~l~vy~l~~~~~L~---~e~~~~~~~i~~~l~~~g~~IlvGD~~kSv~~l~y~~~~~~L~ 1159 (1225)
+...+|+.=.++|.++-| ++|.+++....+.++ +.....+...+-.+...++++++...+.. .+...+++.++.+
T Consensus 107 ~~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~dg~lyvn~~~~~-~V~vID~~tg~V~ 185 (266)
T 2iwa_A 107 KDGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYINGEVWANIWQTD-CIARISAKDGTLL 185 (266)
T ss_dssp SSCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEEETTSS-EEEEEETTTCCEE
T ss_pred CCeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEECCEEEEecCCCC-eEEEEECCCCcEE
No 189
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=48.87 E-value=3e+02 Score=30.02 Aligned_cols=175 Identities=13% Similarity=0.095 Sum_probs=104.6
Q ss_pred eEEEEEEECCCCcEEEEEECCCCCceEEEEEEEecCCCCeEEEEEeeeeCCCCCCCcceEEEEEEEeCCcEEEEEEEEec
Q psy7977 1004 VHNLLIIDQNTFEILHAHQLFPGEYALSLISSKFGEDPNTYFVLGTAVVHPEENEPKQGRIIIFHYDDGKLQQIAEKEIK 1083 (1225)
Q Consensus 1004 ~s~irlvdp~t~~~i~~~eL~~nE~~~si~~v~~~~~~~~~lvVGTa~~~~eed~~~~GrI~vf~i~~~kL~lv~~~ev~ 1083 (1225)
.|.|+.+|+.|.+++.++.+++.-.+..++. . ++..++ .|- ..+++++|+.. .++++.+-++.
T Consensus 64 ~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~--~---g~~ly~-ltw---------~~~~v~v~D~~--t~~~~~ti~~~ 126 (262)
T 3nol_A 64 RSSIRKVDIESGKTLQQIELGKRYFGEGISD--W---KDKIVG-LTW---------KNGLGFVWNIR--NLRQVRSFNYD 126 (262)
T ss_dssp EEEEEEECTTTCCEEEEEECCTTCCEEEEEE--E---TTEEEE-EES---------SSSEEEEEETT--TCCEEEEEECS
T ss_pred CceEEEEECCCCcEEEEEecCCccceeEEEE--e---CCEEEE-EEe---------eCCEEEEEECc--cCcEEEEEECC
Confidence 4899999999999999999976433333332 1 223333 342 24577777764 46666666666
Q ss_pred CceeeeccccCeEEEEeC-CEEEEEEcCCCceee---eeecccc-eeEEEEEEEECCEEEEeeccccEEEEEEecCCCeE
Q psy7977 1084 GACYSMCEFNGKLLASIN-STVRLFEWTNEKELR---LECSHFN-NIIALFLKVKGDFILVGDLMRSLTLLQYKTMEGSF 1158 (1225)
Q Consensus 1084 G~v~al~~f~G~LLa~vg-~~l~vy~l~~~~~L~---~e~~~~~-~~i~~~l~~~g~~IlvGD~~kSv~~l~y~~~~~~L 1158 (1225)
+-..+|+.=.++|.++-| .+|.++|-..-+.++ +.....+ .. .-.+...+++|++..-+.. .+++.+++..+.
T Consensus 127 ~eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~-lNELe~~~G~lyan~w~~~-~I~vIDp~tG~V 204 (262)
T 3nol_A 127 GEGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPE-LNELEWVDGEIFANVWQTN-KIVRIDPETGKV 204 (262)
T ss_dssp SCCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCC-EEEEEEETTEEEEEETTSS-EEEEECTTTCBE
T ss_pred CCceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccc-cceeEEECCEEEEEEccCC-eEEEEECCCCcE
Confidence 655677755667888765 567777776555554 2111111 11 1234445778998886654 577788887776
Q ss_pred EEEeccC----------CCceeEEEEeeeCC---cEEEEcCCCcEEEEEeCC
Q psy7977 1159 EEISRDY----------NPNWMTSIEILDDE---LFLGAENSYNLFICQKDS 1197 (1225)
Q Consensus 1159 ~~~arD~----------~~~wvta~~~Ld~d---t~l~aD~~gNl~vl~~~~ 1197 (1225)
+..-+.. ....+...-.+|.+ -|+.+-.--.||=.++.+
T Consensus 205 ~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~Wp~~~ev~~~~ 256 (262)
T 3nol_A 205 TGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKLWPKVFEITLTQ 256 (262)
T ss_dssp EEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEE
T ss_pred EEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCCCCceEEEEEec
Confidence 5554432 11234444444433 366666667777666654
No 190
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=47.53 E-value=3e+02 Score=29.68 Aligned_cols=192 Identities=13% Similarity=0.169 Sum_probs=100.9
Q ss_pred ccCceeEEEEeccCCCCCCCCccccCcEEEEEEecCCeEEEEeCCCcceEEeecCCCCCCcccEEEEeeCCeeEEEEEEC
Q psy7977 344 ALEYEVACLDISPLSNEETSSEPAKAQLAAVGLWTDISARLLSLPSLEEVCKEPLGGEIIPRSILMTCFEGHCYLLVALG 423 (1225)
Q Consensus 344 ~l~~eIScLai~~~~~~~~~~~~~~s~~laVG~w~d~tv~IlsL~~Le~v~~~~L~~~~~P~SIll~~l~~~~~LlVGl~ 423 (1225)
.+..++|.|+..+- ...+++..+.++.|..+++. -+.+....+.+..=++.|.+. ++..|+++-=+
T Consensus 24 g~~~~lSGla~~~~-----------~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~--~~g~~~vs~E~ 89 (255)
T 3qqz_A 24 GITNNISSLTWSAQ-----------SNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYI--GDNQFVISDER 89 (255)
T ss_dssp TCCSCEEEEEEETT-----------TTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEEC--STTEEEEEETT
T ss_pred CcccCcceeEEeCC-----------CCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEe--CCCEEEEEECC
Confidence 35678999998752 23455545558888888886 344444455433345666554 44455555557
Q ss_pred CCcEEEEEEcCCCCccccceeeee--cCccce--EEEEee-CCceEEEEecCC-cEEEEEcCCe-----eEEeec---c-
Q psy7977 424 DGSMFYFSLDPASGRLTDKKKVTL--GTQPTV--LKTFRS-LSTTNVFACSDR-PTVIYSSNHK-----LVFSNV---N- 488 (1225)
Q Consensus 424 nG~L~~y~ld~~sg~Ls~~k~~~L--G~~pV~--L~~~~~-~g~~~Vfa~sdr-P~liyss~g~-----l~~~pl---~- 488 (1225)
++.++.|.++.. +.+...+...+ +..|-. +--+.. .....++++.++ |.-+|.-+|. ++...- .
T Consensus 90 ~~~l~~~~v~~~-~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~ 168 (255)
T 3qqz_A 90 DYAIYVISLTPN-SEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQR 168 (255)
T ss_dssp TTEEEEEEECTT-CCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHH
T ss_pred CCcEEEEEcCCC-CeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhcc
Confidence 788999998754 22221122212 222211 222221 123356666665 4344443221 222100 0
Q ss_pred cccccccc--cCCCCCCCCeEEEEeCCeEEEEEEcCCCCeeeEEEeCCC----------cccEEEEecCCCEEEEEE
Q psy7977 489 LRQVNHMC--SLNAESYPDSLALATDSTFTFGTIDEIQKLHIRTVPLGE----------APRRIAYQESSQTFGVIT 553 (1225)
Q Consensus 489 ~~~v~~~s--~F~se~~p~glv~vs~~~LrI~~i~~~~~l~ir~IpLg~----------TprrIay~p~s~~~vV~t 553 (1225)
...+..++ .|+. . .+-+.++++.+=++..++...+ ..+..+|.. +|.-|++.+..++|++.+
T Consensus 169 ~~~~~d~S~l~~dp-~-tg~lliLS~~s~~L~~~d~~g~-~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIvsE 242 (255)
T 3qqz_A 169 QFTLDDVSGAEFNQ-Q-KNTLLVLSHESRALQEVTLVGE-VIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIVSE 242 (255)
T ss_dssp TCCSSCCCEEEEET-T-TTEEEEEETTTTEEEEECTTCC-EEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEEET
T ss_pred ccccCCceeEEEcC-C-CCeEEEEECCCCeEEEEcCCCC-EEEEEEcCCccCCcccccCCCCeeEECCCCCEEEEcC
Confidence 00011111 1221 1 2334445555555666776655 677778773 899999999999888854
No 191
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=45.53 E-value=2.1e+02 Score=32.53 Aligned_cols=241 Identities=8% Similarity=-0.044 Sum_probs=0.0
Q ss_pred cEEEEecCCcceeeeecCCCCCcEEEEEecCCEEEEEE-----------CCeEEEEEeeccceeEEeeeccC--------
Q psy7977 286 AAILISTESKARVSSWEPPNGKSISVVSCNKNQVLCAT-----------GCDVYYLEVHGSEIKQLAHRALE-------- 346 (1225)
Q Consensus 286 ~IRli~~~~~~~i~eW~~p~g~~Iv~As~n~~~VlVas-----------gg~Lv~feid~~~L~ev~~~~l~-------- 346 (1225)
.|.+||.++.+.+..+...... -...+-.+.++.+++ ++.|..++.. .++.+....++
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~P-~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~--T~~vv~~I~v~~~~~~~~g 123 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFLS-LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPV--TFLPIADIELPDAPRFSVG 123 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTTC-EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTT--TCCEEEEEEETTSCSCCBS
T ss_pred eEEEEECCCCeEEEEEeCCCCC-ceEECCCCCEEEEEcccccccccCCCCCEEEEEECC--CCCEEEEEECCCccccccC
Q ss_pred ceeEEEEeccCCCCCCCCccccCcEEEEEEec-CCeEEE--EeCCCcceEEeecCCCCCCcccEEEEeeCCeeEEEEEEC
Q psy7977 347 YEVACLDISPLSNEETSSEPAKAQLAAVGLWT-DISARL--LSLPSLEEVCKEPLGGEIIPRSILMTCFEGHCYLLVALG 423 (1225)
Q Consensus 347 ~eIScLai~~~~~~~~~~~~~~s~~laVG~w~-d~tv~I--lsL~~Le~v~~~~L~~~~~P~SIll~~l~~~~~LlVGl~ 423 (1225)
..+-.+++++- .++++|+.+. ++.+.+ +++.+ ...+ .+|....+..-++..|. ....
T Consensus 124 ~~P~~ia~SpD-----------Gk~lyVan~~~~~~v~V~~iD~~t-----v~~i---~v~~~~~~~p~g~~~~~-~~~~ 183 (368)
T 1mda_H 124 PRVHIIGNCAS-----------SACLLFFLFGSSAAAGLSVPGASD-----DQLT---KSASCFHIHPGAAATHY-LGSC 183 (368)
T ss_dssp CCTTSEEECTT-----------SSCEEEEECSSSCEEEEEETTTEE-----EEEE---ECSSCCCCEEEETTEEE-CCCC
T ss_pred CCcceEEEcCC-----------CCEEEEEccCCCCeEEEEEEchhh-----ceEE---ECCCceEEccCCCeEEE-EEcC
Q ss_pred CCcEEEEEEcC-----CCCccccceeeeecCccceEEEEeeCCceEEEEecCCcEEEEEcCCeeEEeec-----cccccc
Q psy7977 424 DGSMFYFSLDP-----ASGRLTDKKKVTLGTQPTVLKTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNV-----NLRQVN 493 (1225)
Q Consensus 424 nG~L~~y~ld~-----~sg~Ls~~k~~~LG~~pV~L~~~~~~g~~~Vfa~sdrP~liyss~g~l~~~pl-----~~~~v~ 493 (1225)
||.++.+.++. ..-....+....+|..|. . ...+...+++....-+.+....+...+... ......
T Consensus 184 dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~~~V~viD~~~~~~~v~~~~~~~~~~~~~~ 259 (368)
T 1mda_H 184 PASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKAD 259 (368)
T ss_dssp TTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBSSCCEEEECCSSCCEEECCCCSSCTHHHHT
T ss_pred CCCEEEEECccccccCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcCCEEEEEECCCCcceEEEEEEecccccccc
Q ss_pred ccccCC------CCCCCCeEEEEe-C-C-----eEEEEEEcCCCCeeeEEEeCCCcccEEEEecCCCEEEEEE
Q psy7977 494 HMCSLN------AESYPDSLALAT-D-S-----TFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVIT 553 (1225)
Q Consensus 494 ~~s~F~------se~~p~glv~vs-~-~-----~LrI~~i~~~~~l~ir~IpLg~TprrIay~p~s~~~vV~t 553 (1225)
...|.. ++.-...++... . + .=...-+|....-.+++||++..|..|+++|..+.+++++
T Consensus 260 ~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~~p~gi~~s~Dg~~l~va~ 332 (368)
T 1mda_H 260 NFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYAN 332 (368)
T ss_dssp TEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEEEECEEEECCSSSCEEEEE
T ss_pred ccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCCCcceEEECCCCCEEEEEc
No 192
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=45.12 E-value=4.2e+02 Score=30.73 Aligned_cols=76 Identities=12% Similarity=0.048 Sum_probs=51.4
Q ss_pred EEEecCCEEEEE-E----------CCeEEEEEeeccceeEEeeeccCceeEEEEeccCCCCCCCCccccCcEEEEEEecC
Q psy7977 311 VVSCNKNQVLCA-T----------GCDVYYLEVHGSEIKQLAHRALEYEVACLDISPLSNEETSSEPAKAQLAAVGLWTD 379 (1225)
Q Consensus 311 ~As~n~~~VlVa-s----------gg~Lv~feid~~~L~ev~~~~l~~eIScLai~~~~~~~~~~~~~~s~~laVG~w~d 379 (1225)
..+-.+..+.++ . +++|..++.. .++.+.+..+...+.++++.+- ....+++..|.+
T Consensus 325 a~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~--T~kvv~~I~vg~~P~gia~spD----------g~~~lyv~n~~s 392 (426)
T 3c75_H 325 AYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAE--TGERINKIELGHEIDSINVSQD----------AEPLLYALSAGT 392 (426)
T ss_dssp EEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETT--TCCEEEEEEEEEEECEEEECCS----------SSCEEEEEETTT
T ss_pred EEcCCCCEEEEEecccccccccCCCCEEEEEECC--CCeEEEEEECCCCcCeEEEccC----------CCEEEEEEcCCC
Confidence 445556777776 3 1357766544 4555556666666778888652 233788888889
Q ss_pred CeEEEEeCCCcceEEee-cC
Q psy7977 380 ISARLLSLPSLEEVCKE-PL 398 (1225)
Q Consensus 380 ~tv~IlsL~~Le~v~~~-~L 398 (1225)
++|.++++.+++.+.+. .+
T Consensus 393 ~~VsVID~~t~kvv~tI~~v 412 (426)
T 3c75_H 393 QTLHIYDAATGEELRSVDQL 412 (426)
T ss_dssp TEEEEEETTTCCEEEEECCC
T ss_pred CeEEEEECCCCCEEEEecCC
Confidence 99999999998887653 45
No 193
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=43.61 E-value=2.9e+02 Score=28.46 Aligned_cols=270 Identities=11% Similarity=0.098 Sum_probs=127.4
Q ss_pred CcceeEEEecCCeEEEEeecCCeEEEEEeeCCCCCCCceEEEeeeeccccceeeEEeeccccCCccEEEEEecCCCccEE
Q psy7977 120 SIPECLTYLDNGVVFVGSRLGDSQLVKLNRSPDENGTYVSVMESFTNLAPIIDMVVVDLERQGQGQLVTCSGGFKEGSLR 199 (1225)
Q Consensus 120 s~~SsL~~L~~g~LFvGS~~GDS~L~~i~~~~ddd~~~l~v~d~l~NlgPI~D~~v~d~~~~~~~qLva~sG~g~~GsLr 199 (1225)
..|.+++.-.+|.++++... +..++++...+ .+.....-.....+.++++. .+..++++... ++.+.
T Consensus 15 ~~~~~i~~d~~g~l~v~~~~-~~~v~~~d~~~-----~~~~~~~~~~~~~~~~i~~~-----~~g~l~v~~~~--~~~i~ 81 (299)
T 2z2n_A 15 TGPYGITVSDKGKVWITQHK-ANMISCINLDG-----KITEYPLPTPDAKVMCLTIS-----SDGEVWFTENA--ANKIG 81 (299)
T ss_dssp CCEEEEEECTTSCEEEEETT-TTEEEEECTTC-----CEEEEECSSTTCCEEEEEEC-----TTSCEEEEETT--TTEEE
T ss_pred CCccceEECCCCCEEEEecC-CCcEEEEcCCC-----CeEEecCCcccCceeeEEEC-----CCCCEEEeCCC--CCeEE
Confidence 46788888888999998653 45677776532 13222111122334455442 13457766432 35566
Q ss_pred EEeecceeeEEEEeeCC-CcceEeEeeeCCCCCCccEEEEEcCCceEEEEEcCc-eeeeeccCCcccccCeEEEEee-CC
Q psy7977 200 IIRNGIGIEEHACIDLP-GIKGIWALSIGSPKNLDNTLVLSFVGHTRVLTLSGA-EVEETEMGGFTSDQQTFYCGNV-DP 276 (1225)
Q Consensus 200 ilR~GI~~~~~~s~eLp-gv~~iWtl~~~~~~~~d~yLVlSf~~~T~Vl~i~ge-~veEv~~sgF~~~~~TL~ag~l-~~ 276 (1225)
.+... .....+.+| .-...+.+.... +..|.++......++.++.+ .+.....+. .......-.+ .+
T Consensus 82 ~~~~~---g~~~~~~~~~~~~~~~~i~~~~----~g~l~v~~~~~~~i~~~d~~g~~~~~~~~~---~~~~~~~i~~~~~ 151 (299)
T 2z2n_A 82 RITKK---GIIKEYTLPNPDSAPYGITEGP----NGDIWFTEMNGNRIGRITDDGKIREYELPN---KGSYPSFITLGSD 151 (299)
T ss_dssp EECTT---SCEEEEECSSTTCCEEEEEECT----TSCEEEEETTTTEEEEECTTCCEEEEECSS---TTCCEEEEEECTT
T ss_pred EECCC---CcEEEEeCCCcCCCceeeEECC----CCCEEEEecCCceEEEECCCCCEEEecCCC---CCCCCceEEEcCC
Confidence 66543 112223344 223344444322 12344443333445555432 233222110 0000111111 12
Q ss_pred CeEEEEc--cCcEEEEecCCcceeeeecCC-CCCcEEEEEec-CCEEEEEE--CCeEEEEEeeccceeEEeeeccCceeE
Q psy7977 277 RTVLQVT--PSAAILISTESKARVSSWEPP-NGKSISVVSCN-KNQVLCAT--GCDVYYLEVHGSEIKQLAHRALEYEVA 350 (1225)
Q Consensus 277 ~~iVQVT--~~~IRli~~~~~~~i~eW~~p-~g~~Iv~As~n-~~~VlVas--gg~Lv~feid~~~L~ev~~~~l~~eIS 350 (1225)
+.+.=.+ ..+|..++.+ ..+..+..+ ....+...+.. +..+.+++ ++.|..+.. .+.+.......-...+.
T Consensus 152 g~l~v~~~~~~~i~~~~~~--g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~ 228 (299)
T 2z2n_A 152 NALWFTENQNNAIGRITES--GDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITEFKIPTPNARPH 228 (299)
T ss_dssp SCEEEEETTTTEEEEECTT--CCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEE
T ss_pred CCEEEEeCCCCEEEEEcCC--CcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEEEECCCCCCCce
Confidence 2222122 2356666652 222233222 22234444443 45677763 567877765 34444332111124566
Q ss_pred EEEeccCCCCCCCCccccCcEEEEEEecCCeEEEEeCCCcceEEeecCCC-CCCcccEEEEeeCCeeEEEEEECCCcEEE
Q psy7977 351 CLDISPLSNEETSSEPAKAQLAAVGLWTDISARLLSLPSLEEVCKEPLGG-EIIPRSILMTCFEGHCYLLVALGDGSMFY 429 (1225)
Q Consensus 351 cLai~~~~~~~~~~~~~~s~~laVG~w~d~tv~IlsL~~Le~v~~~~L~~-~~~P~SIll~~l~~~~~LlVGl~nG~L~~ 429 (1225)
++++.+- . .+.|+.+.++.|..++... .+....++. ...|.++++ . .-.|+++..+|.+.+
T Consensus 229 ~i~~~~~-----------g-~l~v~~~~~~~i~~~d~~g--~~~~~~~~~~~~~~~~i~~---~-~g~l~v~~~~~~l~~ 290 (299)
T 2z2n_A 229 AITAGAG-----------I-DLWFTEWGANKIGRLTSNN--IIEEYPIQIKSAEPHGICF---D-GETIWFAMECDKIGK 290 (299)
T ss_dssp EEEECST-----------T-CEEEEETTTTEEEEEETTT--EEEEEECSSSSCCEEEEEE---C-SSCEEEEETTTEEEE
T ss_pred eEEECCC-----------C-CEEEeccCCceEEEECCCC--ceEEEeCCCCCCccceEEe---c-CCCEEEEecCCcEEE
Confidence 7777431 2 2777877678999998842 222222221 235666665 2 235778877888888
Q ss_pred EEEc
Q psy7977 430 FSLD 433 (1225)
Q Consensus 430 y~ld 433 (1225)
|..+
T Consensus 291 ~~~~ 294 (299)
T 2z2n_A 291 LTLI 294 (299)
T ss_dssp EEEC
T ss_pred EEcC
Confidence 7654
No 194
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=43.53 E-value=3.6e+02 Score=29.48 Aligned_cols=136 Identities=14% Similarity=0.120 Sum_probs=82.8
Q ss_pred EEEEEECCCCcEEEEEECCCCCceEEEEEEEecCCCCeEEEEEeeeeCCCCCCCcceEEEEEEEeCCcEEEEEEEEecCc
Q psy7977 1006 NLLIIDQNTFEILHAHQLFPGEYALSLISSKFGEDPNTYFVLGTAVVHPEENEPKQGRIIIFHYDDGKLQQIAEKEIKGA 1085 (1225)
Q Consensus 1006 ~irlvdp~t~~~i~~~eL~~nE~~~si~~v~~~~~~~~~lvVGTa~~~~eed~~~~GrI~vf~i~~~kL~lv~~~ev~G~ 1085 (1225)
.|+.+|+.|.+++.++ |++.-.+..++ +. ++..++ .|- ..+++++|+.. .++++.+-+..+-
T Consensus 76 ~v~~iD~~Tgkv~~~~-l~~~~FgeGit---~~--g~~Ly~-ltw---------~~~~v~V~D~~--Tl~~~~ti~~~~e 137 (268)
T 3nok_A 76 TLRQLSLESAQPVWME-RLGNIFAEGLA---SD--GERLYQ-LTW---------TEGLLFTWSGM--PPQRERTTRYSGE 137 (268)
T ss_dssp EEEECCSSCSSCSEEE-ECTTCCEEEEE---EC--SSCEEE-EES---------SSCEEEEEETT--TTEEEEEEECSSC
T ss_pred EEEEEECCCCcEEeEE-CCCCcceeEEE---Ee--CCEEEE-EEc---------cCCEEEEEECC--cCcEEEEEeCCCc
Confidence 3999999999999998 87643333332 22 223333 232 24677777764 5677776667666
Q ss_pred eeeeccccCeEEEEeC-CEEEEEEcCCCceee---eeecccceeEEEEEEEECCEEEEeeccccEEEEEEecCCCeEEE
Q psy7977 1086 CYSMCEFNGKLLASIN-STVRLFEWTNEKELR---LECSHFNNIIALFLKVKGDFILVGDLMRSLTLLQYKTMEGSFEE 1160 (1225)
Q Consensus 1086 v~al~~f~G~LLa~vg-~~l~vy~l~~~~~L~---~e~~~~~~~i~~~l~~~g~~IlvGD~~kSv~~l~y~~~~~~L~~ 1160 (1225)
..+||.-.++|.++-| .+|.++|-..-+.++ +.....+.....-|...+++|++..-+.. .+++.+++..+.+.
T Consensus 138 GwGLt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~dG~lyanvw~s~-~I~vIDp~TG~V~~ 215 (268)
T 3nok_A 138 GWGLCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECANGVIYANIWHSS-DVLEIDPATGTVVG 215 (268)
T ss_dssp CCCEEEETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEEETTCS-EEEEECTTTCBEEE
T ss_pred eeEEecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEeCCEEEEEECCCC-eEEEEeCCCCcEEE
Confidence 6788866678888864 677777776555544 21111111002334455778888775544 56777877665543
No 195
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=43.02 E-value=2.8e+02 Score=29.80 Aligned_cols=116 Identities=9% Similarity=0.114 Sum_probs=64.0
Q ss_pred EEEEEEEecCceeeecc-ccCeEEEEe--CCEEEEEEcCCCceee-eeecccceeEEEEEEEE-CCEEEEeeccc-cEEE
Q psy7977 1075 QQIAEKEIKGACYSMCE-FNGKLLASI--NSTVRLFEWTNEKELR-LECSHFNNIIALFLKVK-GDFILVGDLMR-SLTL 1148 (1225)
Q Consensus 1075 ~lv~~~ev~G~v~al~~-f~G~LLa~v--g~~l~vy~l~~~~~L~-~e~~~~~~~i~~~l~~~-g~~IlvGD~~k-Sv~~ 1148 (1225)
+++++-+....+..++- -+|+|.++- +.+|..|+...+ ... ... +.. +..+... .+.++|+|... +..+
T Consensus 23 ~~~~~~p~~~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~~~---~~~-p~gia~~~dG~l~vad~~~~~~~v 97 (306)
T 2p4o_A 23 KIITSFPVNTFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHATV---EGK-VSGLAFTSNGDLVATGWNADSIPV 97 (306)
T ss_dssp EEEEEECTTCCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEEEC---SSE-EEEEEECTTSCEEEEEECTTSCEE
T ss_pred eEeEeCCCCCCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEEeC---CCC-ceeEEEcCCCcEEEEeccCCcceE
Confidence 34444333333444432 267777663 567766665432 222 211 222 3445432 34588999653 5678
Q ss_pred EEEecCCCeEEEEeccCCCceeEEEEeeeCCcEEEEcC-CCcEEEEEe
Q psy7977 1149 LQYKTMEGSFEEISRDYNPNWMTSIEILDDELFLGAEN-SYNLFICQK 1195 (1225)
Q Consensus 1149 l~y~~~~~~L~~~arD~~~~wvta~~~Ld~dt~l~aD~-~gNl~vl~~ 1195 (1225)
++|+....++..++.-...+........+...++++|. .++|+++..
T Consensus 98 ~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~ 145 (306)
T 2p4o_A 98 VSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDV 145 (306)
T ss_dssp EEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEET
T ss_pred EEEcCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeC
Confidence 88887788888777543334444444444456777885 777776653
No 196
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=40.37 E-value=3.6e+02 Score=28.61 Aligned_cols=167 Identities=9% Similarity=-0.043 Sum_probs=88.7
Q ss_pred EEEEEEECCC--CcEEEEEECCCCCceEEEEEEEecCCCCeEEEEEeeeeCCCCCCCcceEEEEEEEeCCcEEEEEEEEe
Q psy7977 1005 HNLLIIDQNT--FEILHAHQLFPGEYALSLISSKFGEDPNTYFVLGTAVVHPEENEPKQGRIIIFHYDDGKLQQIAEKEI 1082 (1225)
Q Consensus 1005 s~irlvdp~t--~~~i~~~eL~~nE~~~si~~v~~~~~~~~~lvVGTa~~~~eed~~~~GrI~vf~i~~~kL~lv~~~ev 1082 (1225)
..+..+|+.+ |+.+.. +...-...+++ .+ +..++++|-.. . .......+++|+...++.+.+...+.
T Consensus 70 ~~~~~~d~~~~~W~~~~~--~p~~r~~~~~~--~~---~~~iyv~GG~~-~---~~~~~~~~~~~d~~~~~W~~~~~~p~ 138 (306)
T 3ii7_A 70 KRMDCYNVVKDSWYSKLG--PPTPRDSLAAC--AA---EGKIYTSGGSE-V---GNSALYLFECYDTRTESWHTKPSMLT 138 (306)
T ss_dssp CEEEEEETTTTEEEEEEC--CSSCCBSCEEE--EE---TTEEEEECCBB-T---TBSCCCCEEEEETTTTEEEEECCCSS
T ss_pred ceEEEEeCCCCeEEECCC--CCccccceeEE--EE---CCEEEEECCCC-C---CCcEeeeEEEEeCCCCceEeCCCCcC
Confidence 5678899886 555543 33322222332 23 23577777431 0 12234567788777666665543333
Q ss_pred cCceeeeccccCeEEEEeC-----------CEEEEEEcCCCceeeeeecccceeEEEEEEEECCEE-EEeeccc---cEE
Q psy7977 1083 KGACYSMCEFNGKLLASIN-----------STVRLFEWTNEKELRLECSHFNNIIALFLKVKGDFI-LVGDLMR---SLT 1147 (1225)
Q Consensus 1083 ~G~v~al~~f~G~LLa~vg-----------~~l~vy~l~~~~~L~~e~~~~~~~i~~~l~~~g~~I-lvGD~~k---Sv~ 1147 (1225)
.-.-.+++.++|+|.+.=| +.+.+|++..++--.......+.. ...+.+.+++| ++|-... .-.
T Consensus 139 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~-~~~~~~~~~~i~v~GG~~~~~~~~~ 217 (306)
T 3ii7_A 139 QRCSHGMVEANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARK-NHGLVFVKDKIFAVGGQNGLGGLDN 217 (306)
T ss_dssp CCBSCEEEEETTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCB-SCEEEEETTEEEEECCEETTEEBCC
T ss_pred CcceeEEEEECCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhh-cceEEEECCEEEEEeCCCCCCCCce
Confidence 2222334456777655432 457788887654222211111111 11122335544 4443221 224
Q ss_pred EEEEecCCCeEEEEeccCCCceeEEEEeeeCCcEEE
Q psy7977 1148 LLQYKTMEGSFEEISRDYNPNWMTSIEILDDELFLG 1183 (1225)
Q Consensus 1148 ~l~y~~~~~~L~~~arD~~~~wvta~~~Ld~dt~l~ 1183 (1225)
+..|+.+.++-..++.-..+|.-.++..++..-++.
T Consensus 218 ~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~ 253 (306)
T 3ii7_A 218 VEYYDIKLNEWKMVSPMPWKGVTVKCAAVGSIVYVL 253 (306)
T ss_dssp EEEEETTTTEEEECCCCSCCBSCCEEEEETTEEEEE
T ss_pred EEEeeCCCCcEEECCCCCCCccceeEEEECCEEEEE
Confidence 667999999999998777788777777776554443
No 197
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=39.41 E-value=5.7e+02 Score=30.61 Aligned_cols=67 Identities=15% Similarity=0.054 Sum_probs=41.8
Q ss_pred cEEEEEec-CCEEEEEECCeEEEEEeeccceeEEeeeccCceeEEEEeccCCCCCCCCccccCcEEEEEEecCCeEEEEe
Q psy7977 308 SISVVSCN-KNQVLCATGCDVYYLEVHGSEIKQLAHRALEYEVACLDISPLSNEETSSEPAKAQLAAVGLWTDISARLLS 386 (1225)
Q Consensus 308 ~Iv~As~n-~~~VlVasgg~Lv~feid~~~L~ev~~~~l~~eIScLai~~~~~~~~~~~~~~s~~laVG~w~d~tv~Ils 386 (1225)
.|...+.+ +.+++++.++.+.+++++.+++..+.. ....+.++++++- .+.++++ . +++|.+++
T Consensus 83 ~v~~~~~spd~~~~~~~~~~i~~~d~~~~~~~~l~~--~~~~~~~~~~Spd-----------G~~la~~-~-~~~i~v~~ 147 (706)
T 2z3z_A 83 PSFRTLDAGRGLVVLFTQGGLVGFDMLARKVTYLFD--TNEETASLDFSPV-----------GDRVAYV-R-NHNLYIAR 147 (706)
T ss_dssp CCEEEEETTTTEEEEEETTEEEEEETTTTEEEEEEC--CTTCCTTCEECTT-----------SSEEEEE-E-TTEEEEEE
T ss_pred CceeEEECCCCeEEEEECCEEEEEECCCCceEEccC--CcccccCCcCCCC-----------CCEEEEE-E-CCeEEEEe
Confidence 35655554 456666677888888876554433321 2344556666542 3456664 4 89999999
Q ss_pred CCC
Q psy7977 387 LPS 389 (1225)
Q Consensus 387 L~~ 389 (1225)
+.+
T Consensus 148 ~~~ 150 (706)
T 2z3z_A 148 GGK 150 (706)
T ss_dssp CBC
T ss_pred cCc
Confidence 976
No 198
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=39.27 E-value=3.9e+02 Score=28.65 Aligned_cols=171 Identities=13% Similarity=0.171 Sum_probs=83.1
Q ss_pred EEEEECCCCcEEEEEECCC--CCceEEEEEEEecCCCCeEEEEEeeeeCCCC-CCCcceEEEEEEEeCCcEEEEEEEEec
Q psy7977 1007 LLIIDQNTFEILHAHQLFP--GEYALSLISSKFGEDPNTYFVLGTAVVHPEE-NEPKQGRIIIFHYDDGKLQQIAEKEIK 1083 (1225)
Q Consensus 1007 irlvdp~t~~~i~~~eL~~--nE~~~si~~v~~~~~~~~~lvVGTa~~~~ee-d~~~~GrI~vf~i~~~kL~lv~~~ev~ 1083 (1225)
+...||.+.+-.. ..+.. .-...++ +.. +..++++|-.....+. ..+....+++|+...++.+.+...+..
T Consensus 26 ~~~yd~~~~~W~~-~~~~~~~~r~~~~~--~~~---~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~ 99 (318)
T 2woz_A 26 AVAYDPMENECYL-TALAEQIPRNHSSI--VTQ---QNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSA 99 (318)
T ss_dssp EEEEETTTTEEEE-EEECTTSCSSEEEE--ECS---SSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSC
T ss_pred eEEECCCCCceec-ccCCccCCccceEE--EEE---CCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCcc
Confidence 6788887643222 23321 1222222 222 3467777853221110 112334477777766666554333322
Q ss_pred CceeeeccccCeEEEEeC---------CEEEEEEcCCCceeeeeecccceeEEEEEEEECCEE-EEeecc----ccEEEE
Q psy7977 1084 GACYSMCEFNGKLLASIN---------STVRLFEWTNEKELRLECSHFNNIIALFLKVKGDFI-LVGDLM----RSLTLL 1149 (1225)
Q Consensus 1084 G~v~al~~f~G~LLa~vg---------~~l~vy~l~~~~~L~~e~~~~~~~i~~~l~~~g~~I-lvGD~~----kSv~~l 1149 (1225)
-.-.+++.++|+|.+.=| +.+.+|+...++--.......+.. .....+.++.| ++|-.. ..-.+.
T Consensus 100 r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~-~~~~~~~~~~iyv~GG~~~~~~~~~~~~ 178 (318)
T 2woz_A 100 RCLFGLGEVDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVY-GHNVISHNGMIYCLGGKTDDKKCTNRVF 178 (318)
T ss_dssp BCSCEEEEETTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEE-SCEEEEETTEEEEECCEESSSCBCCCEE
T ss_pred ccccceEEECCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCccc-ccEEEEECCEEEEEcCCCCCCCccceEE
Confidence 222344556777655322 347777776554222111111100 01112245544 555321 122366
Q ss_pred EEecCCCeEEEEeccCCCceeEEEEeeeCCc-EEEE
Q psy7977 1150 QYKTMEGSFEEISRDYNPNWMTSIEILDDEL-FLGA 1184 (1225)
Q Consensus 1150 ~y~~~~~~L~~~arD~~~~wvta~~~Ld~dt-~l~a 1184 (1225)
.|+.+.++-..++.-..+|.-.++..++..- ++|+
T Consensus 179 ~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG 214 (318)
T 2woz_A 179 IYNPKKGDWKDLAPMKTPRSMFGVAIHKGKIVIAGG 214 (318)
T ss_dssp EEETTTTEEEEECCCSSCCBSCEEEEETTEEEEEEE
T ss_pred EEcCCCCEEEECCCCCCCcccceEEEECCEEEEEcC
Confidence 7999999999998777788776666666553 4443
No 199
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=38.98 E-value=3.9e+02 Score=28.64 Aligned_cols=115 Identities=11% Similarity=0.079 Sum_probs=71.8
Q ss_pred EEEEEEEEecCc--eeeeccccCeEEEEeCC----EEEEEEcCCCceee---eeecccceeEEEEEEEECCEEEEeeccc
Q psy7977 1074 LQQIAEKEIKGA--CYSMCEFNGKLLASINS----TVRLFEWTNEKELR---LECSHFNNIIALFLKVKGDFILVGDLMR 1144 (1225)
Q Consensus 1074 L~lv~~~ev~G~--v~al~~f~G~LLa~vg~----~l~vy~l~~~~~L~---~e~~~~~~~i~~~l~~~g~~IlvGD~~k 1144 (1225)
.+.+.+.+.+.. ...|.=-.|+|..+-|. +|+.+++...+.++ .....|+ --+...++++++.+-..
T Consensus 9 ~~v~~~~phd~~~ftqGL~~~~~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fg----eGi~~~~~~ly~ltw~~ 84 (243)
T 3mbr_X 9 YRVVKRYPHDTTAFTEGLFYLRGHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFG----AGIVAWRDRLIQLTWRN 84 (243)
T ss_dssp EEEEEEEECCTTCCEEEEEEETTEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCE----EEEEEETTEEEEEESSS
T ss_pred eEEEEEcCCCCccccccEEEECCEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcce----eEEEEeCCEEEEEEeeC
Confidence 344555555433 33554225799999887 89999999887766 2233443 33455689999998777
Q ss_pred cEEEEEEecCCCeEE-EEeccCCCceeEEEEeeeCCcEEEEcCCCcEEEEEeCCCC
Q psy7977 1145 SLTLLQYKTMEGSFE-EISRDYNPNWMTSIEILDDELFLGAENSYNLFICQKDSAA 1199 (1225)
Q Consensus 1145 Sv~~l~y~~~~~~L~-~~arD~~~~wvta~~~Ld~dt~l~aD~~gNl~vl~~~~~~ 1199 (1225)
+. .+.|+.+..++. .|.-.. .-|-.+ -|...++++|..+.|+++ ||+.
T Consensus 85 ~~-v~v~D~~tl~~~~ti~~~~-~Gwglt---~dg~~L~vSdgs~~l~~i--Dp~t 133 (243)
T 3mbr_X 85 HE-GFVYDLATLTPRARFRYPG-EGWALT---SDDSHLYMSDGTAVIRKL--DPDT 133 (243)
T ss_dssp SE-EEEEETTTTEEEEEEECSS-CCCEEE---ECSSCEEEECSSSEEEEE--CTTT
T ss_pred CE-EEEEECCcCcEEEEEeCCC-CceEEe---eCCCEEEEECCCCeEEEE--eCCC
Confidence 76 556887655444 333222 335443 256689999988776654 5543
No 200
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=38.80 E-value=4.7e+02 Score=29.44 Aligned_cols=95 Identities=12% Similarity=0.050 Sum_probs=48.1
Q ss_pred eEEEEEeeccceeEEeeeccCceeEEEEeccCCCCCCCCccccCcEEEEEEecCC--eEEEEeCCCcceEEeecCCC-CC
Q psy7977 326 DVYYLEVHGSEIKQLAHRALEYEVACLDISPLSNEETSSEPAKAQLAAVGLWTDI--SARLLSLPSLEEVCKEPLGG-EI 402 (1225)
Q Consensus 326 ~Lv~feid~~~L~ev~~~~l~~eIScLai~~~~~~~~~~~~~~s~~laVG~w~d~--tv~IlsL~~Le~v~~~~L~~-~~ 402 (1225)
.|.++++..++...+. .....+.+++.++- .+.+++....++ .|.++++.+-+.. .+.. ..
T Consensus 204 ~i~~~d~~tg~~~~l~--~~~~~~~~~~~spd-----------g~~la~~~~~~g~~~i~~~d~~~~~~~---~l~~~~~ 267 (415)
T 2hqs_A 204 ALVIQTLANGAVRQVA--SFPRHNGAPAFSPD-----------GSKLAFALSKTGSLNLYVMDLASGQIR---QVTDGRS 267 (415)
T ss_dssp EEEEEETTTCCEEEEE--CCSSCEEEEEECTT-----------SSEEEEEECTTSSCEEEEEETTTCCEE---ECCCCSS
T ss_pred EEEEEECCCCcEEEee--cCCCcccCEEEcCC-----------CCEEEEEEecCCCceEEEEECCCCCEE---eCcCCCC
Confidence 6777776654433222 23456788888752 345665544455 4888888653321 1211 11
Q ss_pred CcccEEEEeeCCeeEEEEEEC-CCcEEEEEEcCCCCc
Q psy7977 403 IPRSILMTCFEGHCYLLVALG-DGSMFYFSLDPASGR 438 (1225)
Q Consensus 403 ~P~SIll~~l~~~~~LlVGl~-nG~L~~y~ld~~sg~ 438 (1225)
...++.+. ++..+|+.+.. +|....|.++..+++
T Consensus 268 ~~~~~~~s--pdg~~l~~~s~~~g~~~i~~~d~~~~~ 302 (415)
T 2hqs_A 268 NNTEPTWF--PDSQNLAFTSDQAGRPQVYKVNINGGA 302 (415)
T ss_dssp CEEEEEEC--TTSSEEEEEECTTSSCEEEEEETTSSC
T ss_pred cccceEEC--CCCCEEEEEECCCCCcEEEEEECCCCC
Confidence 11222221 23445555554 675555666654443
No 201
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=38.48 E-value=2.4e+02 Score=30.28 Aligned_cols=166 Identities=7% Similarity=0.023 Sum_probs=84.1
Q ss_pred EEEEEEECCC--CcEEEEEECCCCCceEEEEEEEecCCCCeEEEEEeeeeCCCCCCCcceEEEEEEEeCCcEEEEEEEEe
Q psy7977 1005 HNLLIIDQNT--FEILHAHQLFPGEYALSLISSKFGEDPNTYFVLGTAVVHPEENEPKQGRIIIFHYDDGKLQQIAEKEI 1082 (1225)
Q Consensus 1005 s~irlvdp~t--~~~i~~~eL~~nE~~~si~~v~~~~~~~~~lvVGTa~~~~eed~~~~GrI~vf~i~~~kL~lv~~~ev 1082 (1225)
..+..+|+.+ |+.+.. +...-.-.++ +.+ +..++++|-.. .......+.+|+...++.+.+...+.
T Consensus 90 ~~~~~~d~~~~~W~~~~~--~p~~r~~~~~--~~~---~~~iyv~GG~~-----~~~~~~~~~~yd~~~~~W~~~~~~p~ 157 (308)
T 1zgk_A 90 SALDCYNPMTNQWSPCAP--MSVPRNRIGV--GVI---DGHIYAVGGSH-----GCIHHNSVERYEPERDEWHLVAPMLT 157 (308)
T ss_dssp CCEEEEETTTTEEEECCC--CSSCCBTCEE--EEE---TTEEEEECCEE-----TTEECCCEEEEETTTTEEEECCCCSS
T ss_pred ceEEEECCCCCeEeECCC--CCcCccccEE--EEE---CCEEEEEcCCC-----CCcccccEEEECCCCCeEeECCCCCc
Confidence 4577889876 444432 2222222222 223 23577776422 11122346777776666555543332
Q ss_pred cCceeeeccccCeEEEEeC-------CEEEEEEcCCCceeeeeecccceeEEEEEEEECCEE-EEeeccc---cEEEEEE
Q psy7977 1083 KGACYSMCEFNGKLLASIN-------STVRLFEWTNEKELRLECSHFNNIIALFLKVKGDFI-LVGDLMR---SLTLLQY 1151 (1225)
Q Consensus 1083 ~G~v~al~~f~G~LLa~vg-------~~l~vy~l~~~~~L~~e~~~~~~~i~~~l~~~g~~I-lvGD~~k---Sv~~l~y 1151 (1225)
.-.-.+.+.++|+|.+.=| +.+.+|++..++--.......+.. .....+.++.| ++|-.-. .-.+..|
T Consensus 158 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~-~~~~~~~~~~iyv~GG~~~~~~~~~v~~y 236 (308)
T 1zgk_A 158 RRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRS-GAGVCVLHNCIYAAGGYDGQDQLNSVERY 236 (308)
T ss_dssp CCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCB-SCEEEEETTEEEEECCBCSSSBCCCEEEE
T ss_pred cccceEEEEECCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccc-cceEEEECCEEEEEeCCCCCCccceEEEE
Confidence 2222233445777665422 457888876554222111111110 01112335544 4453211 2346779
Q ss_pred ecCCCeEEEEeccCCCceeEEEEeeeCCcEEE
Q psy7977 1152 KTMEGSFEEISRDYNPNWMTSIEILDDELFLG 1183 (1225)
Q Consensus 1152 ~~~~~~L~~~arD~~~~wvta~~~Ld~dt~l~ 1183 (1225)
+.+.++-..++.-..+|.-.++..++..-++.
T Consensus 237 d~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~ 268 (308)
T 1zgk_A 237 DVETETWTFVAPMKHRRSALGITVHQGRIYVL 268 (308)
T ss_dssp ETTTTEEEECCCCSSCCBSCEEEEETTEEEEE
T ss_pred eCCCCcEEECCCCCCCccceEEEEECCEEEEE
Confidence 99999999998777777766777766554443
No 202
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=38.15 E-value=3.9e+02 Score=30.28 Aligned_cols=137 Identities=7% Similarity=-0.081 Sum_probs=0.0
Q ss_pred CcceEEEEEEEeCCcEEEEEEEEecCcee-eeccccCeEEEEe---CCEEEEEEcCCCceeeeeecccceeEEEEEEEEC
Q psy7977 1059 PKQGRIIIFHYDDGKLQQIAEKEIKGACY-SMCEFNGKLLASI---NSTVRLFEWTNEKELRLECSHFNNIIALFLKVKG 1134 (1225)
Q Consensus 1059 ~~~GrI~vf~i~~~kL~lv~~~ev~G~v~-al~~f~G~LLa~v---g~~l~vy~l~~~~~L~~e~~~~~~~i~~~l~~~g 1134 (1225)
...++|.+++...+..+.+.......|-. |+.+..|+|..+- +.+|...++............+..--.+.++..+
T Consensus 178 ~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~ 257 (400)
T 3p5b_L 178 SVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLS 257 (400)
T ss_dssp TTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCEEEEEEETTT
T ss_pred CCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCceEEEEEEeCC
Q ss_pred CEEEEeeccccEEEEEEecCCCeEEEEeccCCCceeEEEEeeeCCcEEEEcCCCcEEEEEeCC
Q psy7977 1135 DFILVGDLMRSLTLLQYKTMEGSFEEISRDYNPNWMTSIEILDDELFLGAENSYNLFICQKDS 1197 (1225)
Q Consensus 1135 ~~IlvGD~~kSv~~l~y~~~~~~L~~~arD~~~~wvta~~~Ld~dt~l~aD~~gNl~vl~~~~ 1197 (1225)
++|++.|.....-...=-...++-..+.....-.+..++++ +.+.+..+| .+|=.|.++++
T Consensus 258 ~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v-~~~~lywtd-~~~~~V~~~~~ 318 (400)
T 3p5b_L 258 GRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAV-FEDKVFWTD-IINEAIFSANR 318 (400)
T ss_dssp TEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEE-ETTEEEEEE-SSSCSEEEEES
T ss_pred CEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEE-eCCEEEEec-CCCCeEEEEEc
No 203
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=37.88 E-value=4.3e+02 Score=28.74 Aligned_cols=114 Identities=15% Similarity=0.084 Sum_probs=69.5
Q ss_pred EEEEEEEEecCce--eeeccccCeEEEEeCC----EEEEEEcCCCceee---eeecccceeEEEEEEEECCEEEEeeccc
Q psy7977 1074 LQQIAEKEIKGAC--YSMCEFNGKLLASINS----TVRLFEWTNEKELR---LECSHFNNIIALFLKVKGDFILVGDLMR 1144 (1225)
Q Consensus 1074 L~lv~~~ev~G~v--~al~~f~G~LLa~vg~----~l~vy~l~~~~~L~---~e~~~~~~~i~~~l~~~g~~IlvGD~~k 1144 (1225)
.+.+.+.+.+..+ ..|.--.|+|..+-|. +|+++++...+.++ .....| .--+...|+++++.+-..
T Consensus 31 ~~vv~~~phd~~~ftqGL~~~~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~F----geGit~~g~~ly~ltw~~ 106 (262)
T 3nol_A 31 YQIVHSYPHDTKAFTEGFFYRNGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYF----GEGISDWKDKIVGLTWKN 106 (262)
T ss_dssp EEEEEEEECCTTCEEEEEEEETTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCC----EEEEEEETTEEEEEESSS
T ss_pred eEEEEEecCCCCcccceEEEECCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccc----eeEEEEeCCEEEEEEeeC
Confidence 3445555554443 4443226788888876 89999998877665 222333 334555799999998877
Q ss_pred cEEEEEEecCCCeEE-EEeccCCCceeEEEEeeeCCcEEEEcCCCcEEEEEeCCC
Q psy7977 1145 SLTLLQYKTMEGSFE-EISRDYNPNWMTSIEILDDELFLGAENSYNLFICQKDSA 1198 (1225)
Q Consensus 1145 Sv~~l~y~~~~~~L~-~~arD~~~~wvta~~~Ld~dt~l~aD~~gNl~vl~~~~~ 1198 (1225)
+. ...|+.+..++. .|.-.. .-|-.+ -|.+.++.+|..+.|++ +||+
T Consensus 107 ~~-v~v~D~~t~~~~~ti~~~~-eG~glt---~dg~~L~~SdGs~~i~~--iDp~ 154 (262)
T 3nol_A 107 GL-GFVWNIRNLRQVRSFNYDG-EGWGLT---HNDQYLIMSDGTPVLRF--LDPE 154 (262)
T ss_dssp SE-EEEEETTTCCEEEEEECSS-CCCCEE---ECSSCEEECCSSSEEEE--ECTT
T ss_pred CE-EEEEECccCcEEEEEECCC-CceEEe---cCCCEEEEECCCCeEEE--EcCC
Confidence 76 556887654443 333222 224444 25567888887665554 4554
No 204
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=37.28 E-value=6.1e+02 Score=30.34 Aligned_cols=182 Identities=9% Similarity=0.070 Sum_probs=93.3
Q ss_pred eEEEEEEECCCCcEEEEEECCCCCceEEEEEEEecCCCCeEEEEEeeeeCCCCCCCcceEEEEEEEeCC-cEEEEEEEEe
Q psy7977 1004 VHNLLIIDQNTFEILHAHQLFPGEYALSLISSKFGEDPNTYFVLGTAVVHPEENEPKQGRIIIFHYDDG-KLQQIAEKEI 1082 (1225)
Q Consensus 1004 ~s~irlvdp~t~~~i~~~eL~~nE~~~si~~v~~~~~~~~~lvVGTa~~~~eed~~~~GrI~vf~i~~~-kL~lv~~~ev 1082 (1225)
...|.++|..+.+..........+. .+..+.|..++ .+++++..- .....+.|++|++..+ +++.+....-
T Consensus 234 ~~~l~~~d~~~~~~~~~~~~~~~~~--~~~~~~~spdg-~~l~~~~~~-----~~~~~~~v~~~d~~~g~~~~~~~~~~~ 305 (706)
T 2z3z_A 234 HVTVGIYHLATGKTVYLQTGEPKEK--FLTNLSWSPDE-NILYVAEVN-----RAQNECKVNAYDAETGRFVRTLFVETD 305 (706)
T ss_dssp EEEEEEEETTTTEEEECCCCSCTTC--EEEEEEECTTS-SEEEEEEEC-----TTSCEEEEEEEETTTCCEEEEEEEEEC
T ss_pred eeEEEEEECCCCceEeeccCCCCce--eEeeEEEECCC-CEEEEEEeC-----CCCCeeEEEEEECCCCceeeEEEEccC
Confidence 3689999998877643322111221 23445666554 455555421 2335678888888777 6666654433
Q ss_pred cCce---e--eecc-ccCeEEEEeC--CEEEEEEcC-CCceee-eeecccceeEEEEEEEECCEEEEeecccc---EEEE
Q psy7977 1083 KGAC---Y--SMCE-FNGKLLASIN--STVRLFEWT-NEKELR-LECSHFNNIIALFLKVKGDFILVGDLMRS---LTLL 1149 (1225)
Q Consensus 1083 ~G~v---~--al~~-f~G~LLa~vg--~~l~vy~l~-~~~~L~-~e~~~~~~~i~~~l~~~g~~IlvGD~~kS---v~~l 1149 (1225)
.+.+ . +..+ .+|++|+..+ ..+++|.+. ..+.++ .........-.......|++|+++-...+ ..+.
T Consensus 306 ~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~ 385 (706)
T 2z3z_A 306 KHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFY 385 (706)
T ss_dssp SSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEE
T ss_pred CCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEE
Confidence 3322 2 2222 1788776543 457777765 233333 11111111100223334667766554443 6777
Q ss_pred EEecCCCeEEEEeccCCCceeEEEEeeeCCc-EEEE--cCC--CcEEEEEeC
Q psy7977 1150 QYKTMEGSFEEISRDYNPNWMTSIEILDDEL-FLGA--ENS--YNLFICQKD 1196 (1225)
Q Consensus 1150 ~y~~~~~~L~~~arD~~~~wvta~~~Ld~dt-~l~a--D~~--gNl~vl~~~ 1196 (1225)
.++.+..++..+.. ...+.++.+-.++. ++.+ +.. +.+++....
T Consensus 386 ~~d~~~~~~~~l~~---~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~ 434 (706)
T 2z3z_A 386 CIDIKGGKTKDLTP---ESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIG 434 (706)
T ss_dssp EEETTCCCCEESCC---SSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESS
T ss_pred EEEcCCCCceeccC---CCceEEEEECCCCCEEEEEecCCCCCcEEEEEECC
Confidence 77776666555542 23455666654543 3322 222 447776543
No 205
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=36.25 E-value=3.2e+02 Score=33.09 Aligned_cols=96 Identities=8% Similarity=0.129 Sum_probs=57.1
Q ss_pred EEEEEEECCCCcEEEEEECCCCC----------ce----------EEEEEEEecCCCCeEEEEEeeeeCCCCCCCcceEE
Q psy7977 1005 HNLLIIDQNTFEILHAHQLFPGE----------YA----------LSLISSKFGEDPNTYFVLGTAVVHPEENEPKQGRI 1064 (1225)
Q Consensus 1005 s~irlvdp~t~~~i~~~eL~~nE----------~~----------~si~~v~~~~~~~~~lvVGTa~~~~eed~~~~GrI 1064 (1225)
..|+++|..+.+....+...... .. ..+..+.|..++ .+++++.. |.|
T Consensus 64 ~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~SpDg-~~l~~~~~-----------~~i 131 (741)
T 2ecf_A 64 LDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWSPDA-QRLLFPLG-----------GEL 131 (741)
T ss_dssp EEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEECTTS-SEEEEEET-----------TEE
T ss_pred cEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEECCCC-CEEEEEeC-----------CcE
Confidence 58999999888776655443211 00 112334454443 45665542 789
Q ss_pred EEEEEeCC---cEEEEEEEEecCceeeeccc--cCe-EEEEeCCEEEEEEcCCCcee
Q psy7977 1065 IIFHYDDG---KLQQIAEKEIKGACYSMCEF--NGK-LLASINSTVRLFEWTNEKEL 1115 (1225)
Q Consensus 1065 ~vf~i~~~---kL~lv~~~ev~G~v~al~~f--~G~-LLa~vg~~l~vy~l~~~~~L 1115 (1225)
++|++..+ +++.+. ...+.+.+++ | +|+ |+.+-+..|++|++...+..
T Consensus 132 ~~~d~~~~~~~~~~~l~--~~~~~~~~~~-~SPDG~~la~~~~~~i~~~d~~~g~~~ 185 (741)
T 2ecf_A 132 YLYDLKQEGKAAVRQLT--HGEGFATDAK-LSPKGGFVSFIRGRNLWVIDLASGRQM 185 (741)
T ss_dssp EEEESSSCSTTSCCBCC--CSSSCEEEEE-ECTTSSEEEEEETTEEEEEETTTTEEE
T ss_pred EEEECCCCCcceEEEcc--cCCccccccc-CCCCCCEEEEEeCCcEEEEecCCCCEE
Confidence 99998776 554332 2235565544 3 576 55566789999999765433
No 206
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=36.16 E-value=4.7e+02 Score=28.66 Aligned_cols=130 Identities=8% Similarity=0.018 Sum_probs=70.4
Q ss_pred ceEEEEEEEeCCcEEEEEEEEecCceeeec--cccCeEEEEe---CCEEEEEEcCCCce--eeeeecccceeEEEEEEEE
Q psy7977 1061 QGRIIIFHYDDGKLQQIAEKEIKGACYSMC--EFNGKLLASI---NSTVRLFEWTNEKE--LRLECSHFNNIIALFLKVK 1133 (1225)
Q Consensus 1061 ~GrI~vf~i~~~kL~lv~~~ev~G~v~al~--~f~G~LLa~v---g~~l~vy~l~~~~~--L~~e~~~~~~~i~~~l~~~ 1133 (1225)
.++|.+++......+.+..... ..|.+++ +-.|+|..+- +.+|..+++..... +.......|+- +.++..
T Consensus 100 ~~~I~~~~~dG~~~~~l~~~~~-~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~Png--lavd~~ 176 (318)
T 3sov_A 100 TNRIEVSNLDGSLRKVLFWQEL-DQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNG--LTLDYE 176 (318)
T ss_dssp TTEEEEEETTSCSCEEEECSSC-SSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEE--EEEETT
T ss_pred CCEEEEEECCCCcEEEEEeCCC-CCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECCCCCccE--EEEecc
Confidence 4678777765433343433222 2345443 3568887765 36677777654332 21122233443 334445
Q ss_pred CCEEEEeeccccEEEEEEecCCCeEEEEeccCCCceeEEEEeeeCCcEEEEcCCCcEEEEEeCC
Q psy7977 1134 GDFILVGDLMRSLTLLQYKTMEGSFEEISRDYNPNWMTSIEILDDELFLGAENSYNLFICQKDS 1197 (1225)
Q Consensus 1134 g~~IlvGD~~kSv~~l~y~~~~~~L~~~arD~~~~wvta~~~Ld~dt~l~aD~~gNl~vl~~~~ 1197 (1225)
+++|++.|..... +.+|+.+......+... .-.+..++.+ +.+.+..+|...+ .|.++++
T Consensus 177 ~~~lY~aD~~~~~-I~~~d~dG~~~~~~~~~-~~~~P~glav-~~~~lywtd~~~~-~V~~~~~ 236 (318)
T 3sov_A 177 EQKLYWADAKLNF-IHKSNLDGTNRQAVVKG-SLPHPFALTL-FEDILYWTDWSTH-SILACNK 236 (318)
T ss_dssp TTEEEEEETTTTE-EEEEETTSCSCEEEECS-CCSCEEEEEE-ETTEEEEEETTTT-EEEEEET
T ss_pred CCEEEEEECCCCE-EEEEcCCCCceEEEecC-CCCCceEEEE-eCCEEEEEecCCC-eEEEEEC
Confidence 7899999987642 44455544333444432 2334455554 6778888887554 5556655
No 207
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=36.08 E-value=4.5e+02 Score=31.47 Aligned_cols=62 Identities=11% Similarity=0.048 Sum_probs=37.1
Q ss_pred eeEEEEEEECCCCcEEEEEECCCCC-----ceEEEEEEEecCCCC--eEEEEEeeeeCCCCCCCcceEEEEEEEeCCcE
Q psy7977 1003 EVHNLLIIDQNTFEILHAHQLFPGE-----YALSLISSKFGEDPN--TYFVLGTAVVHPEENEPKQGRIIIFHYDDGKL 1074 (1225)
Q Consensus 1003 ~~s~irlvdp~t~~~i~~~eL~~nE-----~~~si~~v~~~~~~~--~~lvVGTa~~~~eed~~~~GrI~vf~i~~~kL 1074 (1225)
+.++|.-+|+.|.+.+..+++.+++ .+.+...+....+++ .++++|+ ..|.+++++..++++
T Consensus 270 y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~----------~~G~l~~lD~~tG~~ 338 (571)
T 2ad6_A 270 WTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHID----------RNGILYTLNRENGNL 338 (571)
T ss_dssp TTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEEC----------TTSEEEEEETTTCCE
T ss_pred eEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEEEeC----------CCcEEEEEECCCCCE
Confidence 3467999999999999999987543 122222222211232 3455553 257777777666543
No 208
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=36.05 E-value=4.5e+02 Score=28.46 Aligned_cols=136 Identities=9% Similarity=0.004 Sum_probs=0.0
Q ss_pred CcceEEEEEEEeCCcEEEEEEEEecCceeeecc-ccCeEEEEe---CCEEEEEEcCCCceeeeeecccceeEEEEEEEEC
Q psy7977 1059 PKQGRIIIFHYDDGKLQQIAEKEIKGACYSMCE-FNGKLLASI---NSTVRLFEWTNEKELRLECSHFNNIIALFLKVKG 1134 (1225)
Q Consensus 1059 ~~~GrI~vf~i~~~kL~lv~~~ev~G~v~al~~-f~G~LLa~v---g~~l~vy~l~~~~~L~~e~~~~~~~i~~~l~~~g 1134 (1225)
...++|.+++...+..+.+.......|-.-... -.|+|..+- ..+|..+++.....-......+..--.+.++..+
T Consensus 96 ~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~~~~~~~~~P~gla~d~~~ 175 (316)
T 1ijq_A 96 SVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLS 175 (316)
T ss_dssp TTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTT
T ss_pred CCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEEEEECCCCCceEEEEeccC
Q ss_pred CEEEEeeccccEEEEEEecCCCeEEEEecc-CCCceeEEEEeeeCCcEEEEcCCCcEEEEEeCC
Q psy7977 1135 DFILVGDLMRSLTLLQYKTMEGSFEEISRD-YNPNWMTSIEILDDELFLGAENSYNLFICQKDS 1197 (1225)
Q Consensus 1135 ~~IlvGD~~kSv~~l~y~~~~~~L~~~arD-~~~~wvta~~~Ld~dt~l~aD~~gNl~vl~~~~ 1197 (1225)
+++++.|.... .+.+|+.+......++.. ....+..++++ +.+.+..+| .++=.|.++++
T Consensus 176 ~~lY~~D~~~~-~I~~~d~dg~~~~~~~~~~~~~~~P~giav-~~~~ly~~d-~~~~~V~~~~~ 236 (316)
T 1ijq_A 176 GRLYWVDSKLH-SISSIDVNGGNRKTILEDEKRLAHPFSLAV-FEDKVFWTD-IINEAIFSANR 236 (316)
T ss_dssp TEEEEEETTTT-EEEEEETTSCSCEEEEECTTTTSSEEEEEE-ETTEEEEEE-TTTTEEEEEET
T ss_pred CEEEEEECCCC-eEEEEecCCCceEEEeecCCccCCcEEEEE-ECCEEEEEE-CCCCeEEEEeC
No 209
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=34.38 E-value=4.7e+02 Score=28.21 Aligned_cols=128 Identities=13% Similarity=0.095 Sum_probs=0.0
Q ss_pred ceEEEEEEEeCCcEEEEEEEEecCceeeeccc-cCeEEEEeCCEEEEEEcCCCceee---eeecccceeEEEEEEEEC-C
Q psy7977 1061 QGRIIIFHYDDGKLQQIAEKEIKGACYSMCEF-NGKLLASINSTVRLFEWTNEKELR---LECSHFNNIIALFLKVKG-D 1135 (1225)
Q Consensus 1061 ~GrI~vf~i~~~kL~lv~~~ev~G~v~al~~f-~G~LLa~vg~~l~vy~l~~~~~L~---~e~~~~~~~i~~~l~~~g-~ 1135 (1225)
.|.|+.|+...++++.+ ...+.|.+++.- +|+++++....|.+|++...+.-+ ......... +..+.... +
T Consensus 70 ~~~i~~~d~~~~~~~~~---~~~~~v~~i~~~~dg~l~v~~~~gl~~~d~~~g~~~~~~~~~~~~~~~~-~~~i~~d~~G 145 (326)
T 2ghs_A 70 ERELHELHLASGRKTVH---ALPFMGSALAKISDSKQLIASDDGLFLRDTATGVLTLHAELESDLPGNR-SNDGRMHPSG 145 (326)
T ss_dssp GTEEEEEETTTTEEEEE---ECSSCEEEEEEEETTEEEEEETTEEEEEETTTCCEEEEECSSTTCTTEE-EEEEEECTTS
T ss_pred CCEEEEEECCCCcEEEE---ECCCcceEEEEeCCCeEEEEECCCEEEEECCCCcEEEEeeCCCCCCCCC-CCCEEECCCC
Q ss_pred EEEEeecc-----ccEEEEEEecCCCeEEEEeccCCCceeEEEEeeeCCc--EEEEcCCCcEEEEEeC
Q psy7977 1136 FILVGDLM-----RSLTLLQYKTMEGSFEEISRDYNPNWMTSIEILDDEL--FLGAENSYNLFICQKD 1196 (1225)
Q Consensus 1136 ~IlvGD~~-----kSv~~l~y~~~~~~L~~~arD~~~~wvta~~~Ld~dt--~l~aD~~gNl~vl~~~ 1196 (1225)
++++|+.. ....+++|+ ..++..+..+.. +.....+-.++. +++....+.|+++.++
T Consensus 146 ~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~~~~--~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~ 209 (326)
T 2ghs_A 146 ALWIGTMGRKAETGAGSIYHVA--KGKVTKLFADIS--IPNSICFSPDGTTGYFVDTKVNRLMRVPLD 209 (326)
T ss_dssp CEEEEEEETTCCTTCEEEEEEE--TTEEEEEEEEES--SEEEEEECTTSCEEEEEETTTCEEEEEEBC
T ss_pred CEEEEeCCCcCCCCceEEEEEe--CCcEEEeeCCCc--ccCCeEEcCCCCEEEEEECCCCEEEEEEcc
No 210
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=34.02 E-value=1e+02 Score=36.34 Aligned_cols=48 Identities=8% Similarity=0.052 Sum_probs=37.9
Q ss_pred eEEEEeCCeEEEEEEcCCCCeeeEEEe--CCC-cccEEEEecCCCEEEEEE
Q psy7977 506 SLALATDSTFTFGTIDEIQKLHIRTVP--LGE-APRRIAYQESSQTFGVIT 553 (1225)
Q Consensus 506 glv~vs~~~LrI~~i~~~~~l~ir~Ip--Lg~-TprrIay~p~s~~~vV~t 553 (1225)
-++++.++.+|.|.+.+...++.=++| +.. .+++++.+|..+.+++..
T Consensus 34 ~i~~a~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g 84 (452)
T 3pbp_A 34 RIVFIQDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN 84 (452)
T ss_dssp EEEEEETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC
T ss_pred EEEEEECCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEec
Confidence 477888999999999876544444455 345 899999999999999986
No 211
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=33.10 E-value=4.8e+02 Score=27.89 Aligned_cols=167 Identities=11% Similarity=0.122 Sum_probs=85.2
Q ss_pred EEEEEECCC--CcEEEEEECCCCCceEEEEEEEecCCCCeEEEEEeeeeCCCCCCCcceEEEEEEEeCCcEEEEEEEEec
Q psy7977 1006 NLLIIDQNT--FEILHAHQLFPGEYALSLISSKFGEDPNTYFVLGTAVVHPEENEPKQGRIIIFHYDDGKLQQIAEKEIK 1083 (1225)
Q Consensus 1006 ~irlvdp~t--~~~i~~~eL~~nE~~~si~~v~~~~~~~~~lvVGTa~~~~eed~~~~GrI~vf~i~~~kL~lv~~~ev~ 1083 (1225)
.+..+|+.+ |+.+.. +...-...+++ .+ +...+++|-.... .......+++|+...++.+.+...+..
T Consensus 79 ~~~~~d~~~~~W~~~~~--~p~~r~~~~~~--~~---~~~iyv~GG~~~~---~~~~~~~~~~yd~~~~~W~~~~~~p~~ 148 (318)
T 2woz_A 79 YFFQLDNVSSEWVGLPP--LPSARCLFGLG--EV---DDKIYVVAGKDLQ---TEASLDSVLCYDPVAAKWSEVKNLPIK 148 (318)
T ss_dssp EEEEEETTTTEEEECSC--BSSCBCSCEEE--EE---TTEEEEEEEEBTT---TCCEEEEEEEEETTTTEEEEECCCSSC
T ss_pred cEEEEeCCCCcEEECCC--CCccccccceE--EE---CCEEEEEcCccCC---CCcccceEEEEeCCCCCEeECCCCCCc
Confidence 477888876 544432 22222222332 23 2357777753211 223455677887766666655433221
Q ss_pred CceeeeccccCeEEEEeC--------CEEEEEEcCCCceeeeeecccceeEEEEEEEECC-EEEEeeccc---cEEEEEE
Q psy7977 1084 GACYSMCEFNGKLLASIN--------STVRLFEWTNEKELRLECSHFNNIIALFLKVKGD-FILVGDLMR---SLTLLQY 1151 (1225)
Q Consensus 1084 G~v~al~~f~G~LLa~vg--------~~l~vy~l~~~~~L~~e~~~~~~~i~~~l~~~g~-~IlvGD~~k---Sv~~l~y 1151 (1225)
-.-.+++.++|+|.+.=| +.+.+|++..++--.......+.. .....+.++ ..++|-.-. .-.+..|
T Consensus 149 r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~-~~~~~~~~~~iyv~GG~~~~~~~~~~~~y 227 (318)
T 2woz_A 149 VYGHNVISHNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRS-MFGVAIHKGKIVIAGGVTEDGLSASVEAF 227 (318)
T ss_dssp EESCEEEEETTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCB-SCEEEEETTEEEEEEEEETTEEEEEEEEE
T ss_pred ccccEEEEECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCcc-cceEEEECCEEEEEcCcCCCCccceEEEE
Confidence 111233346777755322 348888887654222111111100 011223354 445553221 2345689
Q ss_pred ecCCCeEEEEeccCCCceeEEEEeeeCCcEEE
Q psy7977 1152 KTMEGSFEEISRDYNPNWMTSIEILDDELFLG 1183 (1225)
Q Consensus 1152 ~~~~~~L~~~arD~~~~wvta~~~Ld~dt~l~ 1183 (1225)
+.+.++-..++.-..+|.-.++..++..-++.
T Consensus 228 d~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~ 259 (318)
T 2woz_A 228 DLKTNKWEVMTEFPQERSSISLVSLAGSLYAI 259 (318)
T ss_dssp ETTTCCEEECCCCSSCCBSCEEEEETTEEEEE
T ss_pred ECCCCeEEECCCCCCcccceEEEEECCEEEEE
Confidence 99999999998777778766666666554443
No 212
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=30.92 E-value=6e+02 Score=31.97 Aligned_cols=124 Identities=9% Similarity=0.011 Sum_probs=69.5
Q ss_pred ceEEEEEEEeCCcEEEEEEEEecCceeeec--cccCeEEEEe-C--CEEEEEEcCCCceee--eeecccceeEEEEEEEE
Q psy7977 1061 QGRIIIFHYDDGKLQQIAEKEIKGACYSMC--EFNGKLLASI-N--STVRLFEWTNEKELR--LECSHFNNIIALFLKVK 1133 (1225)
Q Consensus 1061 ~GrI~vf~i~~~kL~lv~~~ev~G~v~al~--~f~G~LLa~v-g--~~l~vy~l~~~~~L~--~e~~~~~~~i~~~l~~~ 1133 (1225)
.++|.+++...+..+.+....+. .|.+|+ +..|+|..+- | .+|.+.++....... ......|+- +.|+..
T Consensus 492 ~~~I~v~~ldG~~~~~l~~~~l~-~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~G--LavD~~ 568 (791)
T 3m0c_C 492 LGTVSVADTKGVKRKTLFRENGS-KPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNG--ITLDLL 568 (791)
T ss_dssp TTEEEEEETTSSSEEEEEECTTC-CEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEE--EEEETT
T ss_pred CCeEEEEeCCCCeEEEEEeCCCC-CcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceE--EEEecC
Confidence 56888877765444444433322 355554 3578887764 4 577777776544322 112233332 344445
Q ss_pred CCEEEEeeccccEEEEEEecCCCeEEEEecc-CCCceeEEEEeeeCCcEEEEcCCCc
Q psy7977 1134 GDFILVGDLMRSLTLLQYKTMEGSFEEISRD-YNPNWMTSIEILDDELFLGAENSYN 1189 (1225)
Q Consensus 1134 g~~IlvGD~~kSv~~l~y~~~~~~L~~~arD-~~~~wvta~~~Ld~dt~l~aD~~gN 1189 (1225)
+++|++.|.... .+.+++.+......+... ..-.+..++++ +.+.+..+|...+
T Consensus 569 ~~~LYwaD~~~~-~I~~~d~dG~~~~~v~~~~~~l~~P~glav-~~~~lYwtD~~~~ 623 (791)
T 3m0c_C 569 SGRLYWVDSKLH-SISSIDVNGGNRKTILEDEKRLAHPFSLAV-FEDKVFWTDIINE 623 (791)
T ss_dssp TTEEEEEETTTT-EEEEEETTSCSCEEEEECTTTTSSEEEEEE-ETTEEEEEETTTT
T ss_pred CCeEEEEeCCCC-cEEEEecCCCceEEEecCCCccCCCCEEEE-eCCEEEEEECCCC
Confidence 789999998653 244455444434444333 33345556665 6778888886543
No 213
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=30.80 E-value=6.2e+02 Score=28.49 Aligned_cols=131 Identities=11% Similarity=0.049 Sum_probs=76.2
Q ss_pred ceEEEEEEEeCCcEEEEEEEEecC---------ceeeecc----ccCeEEEEeC---------------CEEEEEEcC--
Q psy7977 1061 QGRIIIFHYDDGKLQQIAEKEIKG---------ACYSMCE----FNGKLLASIN---------------STVRLFEWT-- 1110 (1225)
Q Consensus 1061 ~GrI~vf~i~~~kL~lv~~~ev~G---------~v~al~~----f~G~LLa~vg---------------~~l~vy~l~-- 1110 (1225)
.|+|++++...+..+-+ .+.+ .+..|.- -.|||++.+. ..|..|++.
T Consensus 34 ~g~V~~~~~~~~~~~~~---~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~ 110 (334)
T 2p9w_A 34 KGRIEVYNPKTQSHFNV---VIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQSSHGASSFHSFNLPLS 110 (334)
T ss_dssp TTEEEEECTTTCCEEEE---CCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSCCSSSCCEEEEEESSCC
T ss_pred CCEEEEEcCCCCeEEEE---ecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccccccccCCCCEEEEEcCCcC
Confidence 46666665543333322 2333 2355554 4689988654 569999998
Q ss_pred -CCceeeeeec-----c-------cceeEEEEEEEEC-CEEEEeeccc-cEEEEEEecCCCeEEEEeccCCC----ceeE
Q psy7977 1111 -NEKELRLECS-----H-------FNNIIALFLKVKG-DFILVGDLMR-SLTLLQYKTMEGSFEEISRDYNP----NWMT 1171 (1225)
Q Consensus 1111 -~~~~L~~e~~-----~-------~~~~i~~~l~~~g-~~IlvGD~~k-Sv~~l~y~~~~~~L~~~arD~~~----~wvt 1171 (1225)
..+.+..... . -... +..+.+-. +.++|.|... +. +++++++...+..+..+..+ .-.+
T Consensus 111 ~tg~~~~~~dL~~~~~~~~~~~g~~~~~-~nDvavD~~GnaYVt~s~~~~~-I~rV~pdG~~~~~~~~~~~~~~~~~G~n 188 (334)
T 2p9w_A 111 ENSKPVWSVNFEKVQDEFEKKAGKRPFG-VVQSAQDRDGNSYVAFALGMPA-IARVSADGKTVSTFAWESGNGGQRPGYS 188 (334)
T ss_dssp TTCCCSEEEESHHHHHHHHHHHSSCCEE-EEEEEECTTSCEEEEEEESSCE-EEEECTTSCCEEEEEECCCCSSSCCSCS
T ss_pred CCCCEEEEecCccccccccccccccccC-CceeEECCCCCEEEeCCCCCCe-EEEEeCCCCEEeeeeecCCCcccccCcc
Confidence 4444431110 0 1111 34454432 4678878776 44 77888877777766544321 1245
Q ss_pred EEEeeeCC-cEEEEcCCCcEEEEEeC
Q psy7977 1172 SIEILDDE-LFLGAENSYNLFICQKD 1196 (1225)
Q Consensus 1172 a~~~Ld~d-t~l~aD~~gNl~vl~~~ 1196 (1225)
.+.+..++ +++++|..|-|+.+...
T Consensus 189 GIv~~pdg~~Liv~~~~g~L~~fD~~ 214 (334)
T 2p9w_A 189 GITFDPHSNKLIAFGGPRALTAFDVS 214 (334)
T ss_dssp EEEEETTTTEEEEESSSSSEEEEECS
T ss_pred eEEEeCCCCEEEEEcCCCeEEEEcCC
Confidence 66676444 89999998889887654
No 214
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=30.77 E-value=5e+02 Score=27.43 Aligned_cols=164 Identities=9% Similarity=0.078 Sum_probs=86.6
Q ss_pred EEEEEECCC--CcEEEEEECCCCCceEEEEEEEecCCCCeEEEEEeeeeCCCCCCCcceEEEEEEEeCCcEEEEEEEEec
Q psy7977 1006 NLLIIDQNT--FEILHAHQLFPGEYALSLISSKFGEDPNTYFVLGTAVVHPEENEPKQGRIIIFHYDDGKLQQIAEKEIK 1083 (1225)
Q Consensus 1006 ~irlvdp~t--~~~i~~~eL~~nE~~~si~~v~~~~~~~~~lvVGTa~~~~eed~~~~GrI~vf~i~~~kL~lv~~~ev~ 1083 (1225)
.+..+|+.+ |+.+.. +...-...++ +.+ +..++++|-.. ......+++|+...++.+.+...+..
T Consensus 25 ~~~~~d~~~~~W~~~~~--~p~~r~~~~~--~~~---~~~lyv~GG~~------~~~~~~~~~~d~~~~~W~~~~~~p~~ 91 (306)
T 3ii7_A 25 SCRYFNPKDYSWTDIRC--PFEKRRDAAC--VFW---DNVVYILGGSQ------LFPIKRMDCYNVVKDSWYSKLGPPTP 91 (306)
T ss_dssp SEEEEETTTTEEEECCC--CSCCCBSCEE--EEE---TTEEEEECCBS------SSBCCEEEEEETTTTEEEEEECCSSC
T ss_pred eEEEecCCCCCEecCCC--CCcccceeEE--EEE---CCEEEEEeCCC------CCCcceEEEEeCCCCeEEECCCCCcc
Confidence 577889887 665543 2222222222 223 23577777432 22345678888777766666543332
Q ss_pred CceeeeccccCeEEEEeC--------CEEEEEEcCCCceeeeeecccceeEEEEEEEECCE-EEEeeccc-------cEE
Q psy7977 1084 GACYSMCEFNGKLLASIN--------STVRLFEWTNEKELRLECSHFNNIIALFLKVKGDF-ILVGDLMR-------SLT 1147 (1225)
Q Consensus 1084 G~v~al~~f~G~LLa~vg--------~~l~vy~l~~~~~L~~e~~~~~~~i~~~l~~~g~~-IlvGD~~k-------Sv~ 1147 (1225)
-.-.+++.++|+|.+.=| +.+.+|+...++--.......+.. .....+.++. .++|-... .-.
T Consensus 92 r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~-~~~~~~~~~~iyv~GG~~~~~~~~~~~~~ 170 (306)
T 3ii7_A 92 RDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRC-SHGMVEANGLIYVCGGSLGNNVSGRVLNS 170 (306)
T ss_dssp CBSCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCB-SCEEEEETTEEEEECCEESCTTTCEECCC
T ss_pred ccceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcc-eeEEEEECCEEEEECCCCCCCCcccccce
Confidence 223344456787766433 347788877654222111111100 0111133544 44453211 234
Q ss_pred EEEEecCCCeEEEEeccCCCceeEEEEeeeCCcEEE
Q psy7977 1148 LLQYKTMEGSFEEISRDYNPNWMTSIEILDDELFLG 1183 (1225)
Q Consensus 1148 ~l~y~~~~~~L~~~arD~~~~wvta~~~Ld~dt~l~ 1183 (1225)
+..|+.+.++-..++.-..+|.-.++..++..-++.
T Consensus 171 ~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~ 206 (306)
T 3ii7_A 171 CEVYDPATETWTELCPMIEARKNHGLVFVKDKIFAV 206 (306)
T ss_dssp EEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEE
T ss_pred EEEeCCCCCeEEECCCccchhhcceEEEECCEEEEE
Confidence 667999999999998767777766666665543333
No 215
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=30.64 E-value=5.9e+02 Score=28.51 Aligned_cols=136 Identities=10% Similarity=0.060 Sum_probs=0.0
Q ss_pred ceEEEEEEEeCCcEEEEEEEEecCce-eeeccccCeEEEE--eCCEEEEEEcCCCceeeeeecccceeEEEEEEEECCEE
Q psy7977 1061 QGRIIIFHYDDGKLQQIAEKEIKGAC-YSMCEFNGKLLAS--INSTVRLFEWTNEKELRLECSHFNNIIALFLKVKGDFI 1137 (1225)
Q Consensus 1061 ~GrI~vf~i~~~kL~lv~~~ev~G~v-~al~~f~G~LLa~--vg~~l~vy~l~~~~~L~~e~~~~~~~i~~~l~~~g~~I 1137 (1225)
.++|+.+....+..+.+.......+- .|+....|+|..+ -+.+|.++++..+..-......+..--.+.++..++++
T Consensus 137 ~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~l 216 (386)
T 3v65_B 137 LDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTI 216 (386)
T ss_dssp TTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEE
T ss_pred CCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeE
Q ss_pred EEeeccccEEEEEEecCCCeEEEEeccCCCceeEEEEee-eCCcEEEEcCCCcEEEEEeCCC
Q psy7977 1138 LVGDLMRSLTLLQYKTMEGSFEEISRDYNPNWMTSIEIL-DDELFLGAENSYNLFICQKDSA 1198 (1225)
Q Consensus 1138 lvGD~~kSv~~l~y~~~~~~L~~~arD~~~~wvta~~~L-d~dt~l~aD~~gNl~vl~~~~~ 1198 (1225)
++.|....=.+.+++.+......+.. ..-.|...+.+= +.+++..+|...+ .|.+++.+
T Consensus 217 y~td~~~~~~I~r~~~dG~~~~~~~~-~~~~~PnGlavd~~~~~lY~aD~~~~-~I~~~d~d 276 (386)
T 3v65_B 217 YWTDWGNTPRIEASSMDGSGRRIIAD-THLFWPNGLTIDYAGRRMYWVDAKHH-VIERANLD 276 (386)
T ss_dssp EEEECSSSCEEEEEETTSCSCEEEEC-SSCSCEEEEEEEGGGTEEEEEETTTT-EEEEECTT
T ss_pred EEeccCCCCEEEEEeCCCCCcEEEEE-CCCCCeeeEEEeCCCCEEEEEECCCC-EEEEEeCC
No 216
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=30.17 E-value=8.3e+02 Score=29.76 Aligned_cols=190 Identities=13% Similarity=0.101 Sum_probs=0.0
Q ss_pred cceeeeEEEEEEECCCCcEEEEEECCCC-----CceEEEEEEEecCCCC--eEEEEEeeeeCCCCCCCcceEEEEEEEeC
Q psy7977 999 NMEVEVHNLLIIDQNTFEILHAHQLFPG-----EYALSLISSKFGEDPN--TYFVLGTAVVHPEENEPKQGRIIIFHYDD 1071 (1225)
Q Consensus 999 ~~~~~~s~irlvdp~t~~~i~~~eL~~n-----E~~~si~~v~~~~~~~--~~lvVGTa~~~~eed~~~~GrI~vf~i~~ 1071 (1225)
|...+.++|..+|+.|.+.+..+++.++ ....+...+....+++ .++++|+ ..|.+++++..+
T Consensus 277 gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~----------~~G~l~~lD~~t 346 (677)
T 1kb0_A 277 GDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAP----------KNGFFFVLDRTN 346 (677)
T ss_dssp CCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECC----------TTSEEEEEETTT
T ss_pred CCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEEC----------CCCEEEEEECCC
Q ss_pred CcEEEEEEEEecCce--------------------------------------eeeccccCeEEEEeC------------
Q psy7977 1072 GKLQQIAEKEIKGAC--------------------------------------YSMCEFNGKLLASIN------------ 1101 (1225)
Q Consensus 1072 ~kL~lv~~~ev~G~v--------------------------------------~al~~f~G~LLa~vg------------ 1101 (1225)
|++ +.+.++.... .|+.+-.|.+.++.+
T Consensus 347 G~~--l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~ 424 (677)
T 1kb0_A 347 GKF--ISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKW 424 (677)
T ss_dssp CCE--EEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTC
T ss_pred CCE--eccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeeccccc
Q ss_pred --------------------------------CEEEEEEcCCCceeeeeecccceeEEEEEEEECCEEEEeeccccEEEE
Q psy7977 1102 --------------------------------STVRLFEWTNEKELRLECSHFNNIIALFLKVKGDFILVGDLMRSLTLL 1149 (1225)
Q Consensus 1102 --------------------------------~~l~vy~l~~~~~L~~e~~~~~~~i~~~l~~~g~~IlvGD~~kSv~~l 1149 (1225)
..|..+++...+.+-.-....+.. ...+.+.|+++++| -..=.+.
T Consensus 425 ~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~-~g~~~~~g~~v~~g--~~dg~l~ 501 (677)
T 1kb0_A 425 EFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVSPWN-GGTLTTAGNVVFQG--TADGRLV 501 (677)
T ss_dssp CTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEESSSCC-CCEEEETTTEEEEE--CTTSEEE
T ss_pred ccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCCCCCCc-CcceEeCCCEEEEE--CCCCcEE
Q ss_pred EEecCCCeEEEEeccCCCceeEEEEe-eeCCcEEEEcCC-----------------CcEEEEEeCCCCCCcc
Q psy7977 1150 QYKTMEGSFEEISRDYNPNWMTSIEI-LDDELFLGAENS-----------------YNLFICQKDSAATSDE 1203 (1225)
Q Consensus 1150 ~y~~~~~~L~~~arD~~~~wvta~~~-Ld~dt~l~aD~~-----------------gNl~vl~~~~~~~~~~ 1203 (1225)
.|+.+.++..---+-....+.+.+.+ .|...+++.-.- +-++++.++..+...+
T Consensus 502 a~D~~tG~~lw~~~~~~~~~~~p~~y~~~G~~~v~~~~G~~~~~~~~~~~~~~~~~~~l~~f~l~~~a~~~~ 573 (677)
T 1kb0_A 502 AYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYVSVAVGWGGVYGLAARATERQGPGTVYTFVVGGKARMPE 573 (677)
T ss_dssp EEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEECCCHHHHHHCCSCSCCCCCEEEEEEETCBCCCCC
T ss_pred EEECCCCceeeeeeCCCCcccCCEEEEeCCEEEEEEeccCCccccccccccccCCCCeEEEEeccccccccc
No 217
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=29.10 E-value=6.2e+02 Score=27.94 Aligned_cols=71 Identities=14% Similarity=0.188 Sum_probs=48.0
Q ss_pred CcEEEEEec---------CCEEEEE--ECCeEEEEEeeccceeEEeeeccCceeEEEEeccCCCCCCCCccccCcEEEEE
Q psy7977 307 KSISVVSCN---------KNQVLCA--TGCDVYYLEVHGSEIKQLAHRALEYEVACLDISPLSNEETSSEPAKAQLAAVG 375 (1225)
Q Consensus 307 ~~Iv~As~n---------~~~VlVa--sgg~Lv~feid~~~L~ev~~~~l~~eIScLai~~~~~~~~~~~~~~s~~laVG 375 (1225)
..|.+.+.+ +.+++++ .++.+.+.++..+.. ..........+.|++..|. ...+++.|
T Consensus 137 ~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~-~~~~~~~~~~v~~v~~~p~----------~~~~l~~~ 205 (393)
T 4gq1_A 137 NFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGP-ILAGYPLSSPGISVQFRPS----------NPNQLIVG 205 (393)
T ss_dssp SCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEE-EEEEEECSSCEEEEEEETT----------EEEEEEEE
T ss_pred CceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCce-eeeecCCCCCcEEEEECCC----------CCceEEec
Confidence 357776665 4556664 578898888865421 1223345677889988762 24578888
Q ss_pred EecCCeEEEEeCCC
Q psy7977 376 LWTDISARLLSLPS 389 (1225)
Q Consensus 376 ~w~d~tv~IlsL~~ 389 (1225)
.. |++|++|++..
T Consensus 206 ~~-d~~v~~wd~~t 218 (393)
T 4gq1_A 206 ER-NGNIRIFDWTL 218 (393)
T ss_dssp ET-TSEEEEEETTC
T ss_pred CC-CCEEEEEECCC
Confidence 87 99999999964
No 218
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=28.77 E-value=9.6e+02 Score=30.07 Aligned_cols=137 Identities=9% Similarity=0.083 Sum_probs=69.0
Q ss_pred eEEEEccCcEEEEecCCcceeeeecCCCCCcEEEEEe--cCCEEEEE--ECCeEEEEEeeccc----eeEEeeeccCcee
Q psy7977 278 TVLQVTPSAAILISTESKARVSSWEPPNGKSISVVSC--NKNQVLCA--TGCDVYYLEVHGSE----IKQLAHRALEYEV 349 (1225)
Q Consensus 278 ~iVQVT~~~IRli~~~~~~~i~eW~~p~g~~Iv~As~--n~~~VlVa--sgg~Lv~feid~~~----L~ev~~~~l~~eI 349 (1225)
.++=...++||.++.+.. ......+.. ..+..-+. .+..|.++ ..+.|..+.++... ...+....+ ..+
T Consensus 397 ~Ll~an~~~Ir~i~l~~~-~~~~l~~~~-~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l-~~P 473 (791)
T 3m0c_C 397 YLFFTNRHEVRKMTLDRS-EYTSLIPNL-RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI-QAP 473 (791)
T ss_dssp EEEEECBSSEEEECTTSC-CCEEEECSC-SSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSC-SCC
T ss_pred ccccccccceeEeeccCC-cceeeecCC-CceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCC-CCc
Confidence 444455677888877642 122222222 23333333 35677777 34667766665321 111111111 234
Q ss_pred EEEEeccCCCCCCCCccccCcEEEEEEecCCeEEEEeCCCcc--eEEeecCCCCCCcccEEEEeeCCeeEEEEEE-CC-C
Q psy7977 350 ACLDISPLSNEETSSEPAKAQLAAVGLWTDISARLLSLPSLE--EVCKEPLGGEIIPRSILMTCFEGHCYLLVAL-GD-G 425 (1225)
Q Consensus 350 ScLai~~~~~~~~~~~~~~s~~laVG~w~d~tv~IlsL~~Le--~v~~~~L~~~~~P~SIll~~l~~~~~LlVGl-~n-G 425 (1225)
..||+... ...|.+.-+..++|+++++..-. .+....+ ..|+.|++-...+ +|++.- ++ +
T Consensus 474 ~GLAvD~~-----------~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l---~~P~gIaVDp~~g--~LYwtD~g~~~ 537 (791)
T 3m0c_C 474 DGLAVDWI-----------HSNIYWTDSVLGTVSVADTKGVKRKTLFRENG---SKPRAIVVDPVHG--FMYWTDWGTPA 537 (791)
T ss_dssp CEEEEETT-----------TTEEEEEETTTTEEEEEETTSSSEEEEEECTT---CCEEEEEEETTTT--EEEEEECSSSC
T ss_pred ceeeeeec-----------CCcEEEEecCCCeEEEEeCCCCeEEEEEeCCC---CCcceEEEecCCC--CEEEecCCCCC
Confidence 56776542 34577777778899999987422 2333344 3588887764433 344443 22 4
Q ss_pred cEEEEEEc
Q psy7977 426 SMFYFSLD 433 (1225)
Q Consensus 426 ~L~~y~ld 433 (1225)
.+.++.++
T Consensus 538 ~I~~~~~d 545 (791)
T 3m0c_C 538 KIKKGGLN 545 (791)
T ss_dssp EEEEEETT
T ss_pred eEEEEecC
Confidence 55555544
No 219
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=27.39 E-value=5.5e+02 Score=29.04 Aligned_cols=100 Identities=15% Similarity=0.110 Sum_probs=53.1
Q ss_pred ceEEEEEEEeCCcEEEEEEEEecC----cee-eec--cccCeEEEEe--CCEEEEEEcCCCceeeeeec-----------
Q psy7977 1061 QGRIIIFHYDDGKLQQIAEKEIKG----ACY-SMC--EFNGKLLASI--NSTVRLFEWTNEKELRLECS----------- 1120 (1225)
Q Consensus 1061 ~GrI~vf~i~~~kL~lv~~~ev~G----~v~-al~--~f~G~LLa~v--g~~l~vy~l~~~~~L~~e~~----------- 1120 (1225)
.|+|+.|+...+++.++...+..| .|+ .|+ +-.|+|.++- +++|+.|+...+........
T Consensus 239 ~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~~~~~~g~~~~~g~~dg~~~ 318 (409)
T 3hrp_A 239 NKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGECEWFCGSATQKTVQDGLRE 318 (409)
T ss_dssp TCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCCEEEEEECTTCCSCBCEEGG
T ss_pred CCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCCEEEEEeCCCCCCcCCCccc
Confidence 467777776655665553322222 123 443 3358888774 46677776654321111110
Q ss_pred --ccceeEEEEEEE--ECCEEEEeec-cccEEEEEEecCCCeEEEEecc
Q psy7977 1121 --HFNNIIALFLKV--KGDFILVGDL-MRSLTLLQYKTMEGSFEEISRD 1164 (1225)
Q Consensus 1121 --~~~~~i~~~l~~--~g~~IlvGD~-~kSv~~l~y~~~~~~L~~~arD 1164 (1225)
.+. . +..+.. .|+ ++|+|. .. =.+.+|+....++..++-.
T Consensus 319 ~~~~~-~-P~gia~d~dG~-lyvad~~~~-~~I~~~~~~~G~v~~~~g~ 363 (409)
T 3hrp_A 319 EALFA-Q-PNGMTVDEDGN-FYIVDGFKG-YCLRKLDILDGYVSTVAGQ 363 (409)
T ss_dssp GCBCS-S-EEEEEECTTCC-EEEEETTTT-CEEEEEETTTTEEEEEEEC
T ss_pred ccEeC-C-CeEEEEeCCCC-EEEEeCCCC-CEEEEEECCCCEEEEEeCC
Confidence 011 1 334433 344 999998 43 3466788556777777654
No 220
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=26.07 E-value=9.1e+02 Score=28.90 Aligned_cols=40 Identities=0% Similarity=-0.066 Sum_probs=25.8
Q ss_pred eEEEEEEcCCCCeeeEEEeCCCcccEEEEecCCCEEEEEEE
Q psy7977 514 TFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITT 554 (1225)
Q Consensus 514 ~LrI~~i~~~~~l~ir~IpLg~TprrIay~p~s~~~vV~t~ 554 (1225)
..+|..++...+ ..+.+.-......++++|..+.+++.+.
T Consensus 405 ~~~l~~~~~~g~-~~~~l~~~~~~~~~~~spdg~~l~~~~~ 444 (741)
T 2ecf_A 405 ESQIYAVPLQGG-QPQRLSKAPGMHSASFARNASVYVDSWS 444 (741)
T ss_dssp CBEEEEEETTCC-CCEECCCSCSEEEEEECTTSSEEEEEEE
T ss_pred eEEEEEEEcCCC-CeeecccCCCceEEEECCCCCEEEEEec
Confidence 677777764332 1233333445668899999999888873
No 221
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=24.97 E-value=6.8e+02 Score=28.26 Aligned_cols=132 Identities=10% Similarity=0.058 Sum_probs=68.6
Q ss_pred ceEEEEEEEeCCcEEEEEEEEecCceeeeccccCeEEEEeC--C-EEEEEEcCCCceee-e-e----ecccceeEEEEEE
Q psy7977 1061 QGRIIIFHYDDGKLQQIAEKEIKGACYSMCEFNGKLLASIN--S-TVRLFEWTNEKELR-L-E----CSHFNNIIALFLK 1131 (1225)
Q Consensus 1061 ~GrI~vf~i~~~kL~lv~~~ev~G~v~al~~f~G~LLa~vg--~-~l~vy~l~~~~~L~-~-e----~~~~~~~i~~~l~ 1131 (1225)
.++|++|+...++++.+....-.+. -++..-.++|.++-. . +|.+++......++ . . ....++. +.++
T Consensus 151 ~~~I~~id~~~g~~~~~~~~~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~--iav~ 227 (409)
T 3hrp_A 151 DPRVRLISVDDNKVTTVHPGFKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGA--VALD 227 (409)
T ss_dssp TTEEEEEETTTTEEEEEEETCCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCB--CEEC
T ss_pred CCcEEEEECCCCEEEEeeccCCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeEEeeeccchhcCCcEE--EEEe
Confidence 4688888876667766654422222 343333345555432 2 77777775443322 1 1 1122222 1222
Q ss_pred EECCEEEEeeccccEEEEEEecCCCeEEEEec---cCCCcee-E-EEEeee-CCcEEEEcCCCcEEEEEeCCC
Q psy7977 1132 VKGDFILVGDLMRSLTLLQYKTMEGSFEEISR---DYNPNWM-T-SIEILD-DELFLGAENSYNLFICQKDSA 1198 (1225)
Q Consensus 1132 ~~g~~IlvGD~~kSv~~l~y~~~~~~L~~~ar---D~~~~wv-t-a~~~Ld-~dt~l~aD~~gNl~vl~~~~~ 1198 (1225)
..+++|++.|... .+.+|+.+......++. .-...|- . .+.+-. .+.+.++|...| .|.+++++
T Consensus 228 p~~g~lyv~d~~~--~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~-~I~~~~~~ 297 (409)
T 3hrp_A 228 ETEEWLYFVDSNK--NFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLS-SVYKITPD 297 (409)
T ss_dssp TTSSEEEEECTTC--EEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTT-EEEEECTT
T ss_pred CCCCeEEEEECCC--cEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCC-EEEEEecC
Confidence 2357888888633 57778887666666632 1122232 1 444444 357778887655 34555543
No 222
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=24.33 E-value=9e+02 Score=29.68 Aligned_cols=100 Identities=18% Similarity=0.218 Sum_probs=51.8
Q ss_pred eeeeccc-cCeEEEEeCCEEEEEEcCCCceeeeeec-ccceeEEEEEE-EECCEEEEeeccccEEEEEEecCCCeEEEEe
Q psy7977 1086 CYSMCEF-NGKLLASINSTVRLFEWTNEKELRLECS-HFNNIIALFLK-VKGDFILVGDLMRSLTLLQYKTMEGSFEEIS 1162 (1225)
Q Consensus 1086 v~al~~f-~G~LLa~vg~~l~vy~l~~~~~L~~e~~-~~~~~i~~~l~-~~g~~IlvGD~~kSv~~l~y~~~~~~L~~~a 1162 (1225)
|.+++.- +|+|.+|..+.|..|+...++....... .....+ ..+. ..++.+.+|-...+ +.+|+.+.+++..+.
T Consensus 133 i~~i~~d~~g~lwi~t~~gl~~~~~~~~~~~~~~~~~~~~~~i-~~i~~d~~g~lwigt~~~G--l~~~~~~~~~~~~~~ 209 (795)
T 4a2l_A 133 VNGIEEISPEQLLISTPEGLIMFDIKESKFIDDSFSTAMHKTI-ASTLYRQGDQIYIGTSTDG--LYTYSITQKTFEKVI 209 (795)
T ss_dssp CCEEEEEETTEEEEEETTEEEEEETTTTEEECSSSCHHHHTCC-EEEEEEETTEEEEEESSSC--EEEEETTTCCEEECC
T ss_pred EEEEEECCCCCEEEEECCceEEEECCCCEEEeccCCCCCCcce-EEEEECCCCCEEEEECCCC--EEEEeCCCCeEEEec
Confidence 7777655 7999999989899998765442211110 001101 2222 34677888865556 456776666665543
Q ss_pred ccCCCceeEEEEeeeCCc-EEEEcCCC
Q psy7977 1163 RDYNPNWMTSIEILDDEL-FLGAENSY 1188 (1225)
Q Consensus 1163 rD~~~~wvta~~~Ld~dt-~l~aD~~g 1188 (1225)
.......+.++..-.++. +++++..|
T Consensus 210 ~~~~~~~i~~i~~d~~g~lwigt~~~G 236 (795)
T 4a2l_A 210 PILGTKQIQAILQQSPTRIWVATEGAG 236 (795)
T ss_dssp ----CCCEEEEEEEETTEEEEEEBSSC
T ss_pred CCCCCCeeEEEEEcCCCCEEEEECCCC
Confidence 222223444444333333 44444444
No 223
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=23.90 E-value=5.8e+02 Score=27.23 Aligned_cols=101 Identities=14% Similarity=0.204 Sum_probs=54.8
Q ss_pred ceEEEEEEEeCCcEEEEEEEE------------------ecCceeeeccc--cCeEEEE-eCCEEEEEEcCCCc--eeee
Q psy7977 1061 QGRIIIFHYDDGKLQQIAEKE------------------IKGACYSMCEF--NGKLLAS-INSTVRLFEWTNEK--ELRL 1117 (1225)
Q Consensus 1061 ~GrI~vf~i~~~kL~lv~~~e------------------v~G~v~al~~f--~G~LLa~-vg~~l~vy~l~~~~--~L~~ 1117 (1225)
.|+|+.|+...++++.+.... .-+.|.+|+-- +|+|++| .+..++.++....+ .+..
T Consensus 39 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d~~~~i~~~d~~~g~~~~~~~ 118 (322)
T 2fp8_A 39 DGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVDCYYHLSVVGSEGGHATQLAT 118 (322)
T ss_dssp TSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEETTTEEEEECTTCEECEEEES
T ss_pred CCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEECCCCEEEEeCCCCEEEEecc
Confidence 478877765545665443211 12356777644 5888887 56667777765322 1221
Q ss_pred ee--cccceeEEEEEEEE--CCEEEEeeccc----------------cEEEEEEecCCCeEEEEec
Q psy7977 1118 EC--SHFNNIIALFLKVK--GDFILVGDLMR----------------SLTLLQYKTMEGSFEEISR 1163 (1225)
Q Consensus 1118 e~--~~~~~~i~~~l~~~--g~~IlvGD~~k----------------Sv~~l~y~~~~~~L~~~ar 1163 (1225)
.. ..+ .. +..+... .+.++|+|... .=.+++|+++..++..+..
T Consensus 119 ~~~~~~~-~~-p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~ 182 (322)
T 2fp8_A 119 SVDGVPF-KW-LYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLK 182 (322)
T ss_dssp EETTEEC-SC-EEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEEEE
T ss_pred cCCCCcc-cc-cceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEEEecc
Confidence 00 111 11 3444443 35789999752 2457788876666655443
No 224
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=23.27 E-value=6.1e+02 Score=26.30 Aligned_cols=91 Identities=16% Similarity=0.184 Sum_probs=48.3
Q ss_pred cCeEEEE---------eCCEEEEEEcCCCceeeeee---cccceeEEEEEEE-EC-CEEEEeeccccEEEEEEecCCCeE
Q psy7977 1093 NGKLLAS---------INSTVRLFEWTNEKELRLEC---SHFNNIIALFLKV-KG-DFILVGDLMRSLTLLQYKTMEGSF 1158 (1225)
Q Consensus 1093 ~G~LLa~---------vg~~l~vy~l~~~~~L~~e~---~~~~~~i~~~l~~-~g-~~IlvGD~~kSv~~l~y~~~~~~L 1158 (1225)
+|+|+++ -+..|.+|+....+...... ...... +..+.. .. +++++++...+ +.+|+.+ +++
T Consensus 28 ~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~-~~~i~~~~~~g~l~v~~~~~~--l~~~d~~-g~~ 103 (314)
T 1pjx_A 28 NGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGI-PAGCQCDRDANQLFVADMRLG--LLVVQTD-GTF 103 (314)
T ss_dssp TSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECC-EEEEEECSSSSEEEEEETTTE--EEEEETT-SCE
T ss_pred CCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCC-CceEEEecCCCcEEEEECCCC--EEEEeCC-CCE
Confidence 5776655 45678888775544322111 001112 344443 23 68889887664 5668887 777
Q ss_pred EEE-eccCC---CceeEEEEeeeCCcEEEEcCC
Q psy7977 1159 EEI-SRDYN---PNWMTSIEILDDELFLGAENS 1187 (1225)
Q Consensus 1159 ~~~-arD~~---~~wvta~~~Ld~dt~l~aD~~ 1187 (1225)
..+ ..... ...+.++.+-.++.+.+++..
T Consensus 104 ~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~ 136 (314)
T 1pjx_A 104 EEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPA 136 (314)
T ss_dssp EECCSBCTTSCBCBCCCEEEECTTSCEEEEECB
T ss_pred EEEEeccCCCccccCCcCEEECCCCCEEEEecC
Confidence 766 43321 123445554344555556543
No 225
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=22.91 E-value=8.5e+02 Score=27.40 Aligned_cols=132 Identities=14% Similarity=0.194 Sum_probs=75.1
Q ss_pred cceEEEEEEEeC--CcEEEEEEEE-----ecCceeeecccc---C--eEEEE----eCCEEEEEEcCCCc-eee----ee
Q psy7977 1060 KQGRIIIFHYDD--GKLQQIAEKE-----IKGACYSMCEFN---G--KLLAS----INSTVRLFEWTNEK-ELR----LE 1118 (1225)
Q Consensus 1060 ~~GrI~vf~i~~--~kL~lv~~~e-----v~G~v~al~~f~---G--~LLa~----vg~~l~vy~l~~~~-~L~----~e 1118 (1225)
..|+|++|+..+ .+.+.+.-+. -..-|..|.-+. | +|.++ -++++.+|++..+. .+. .+
T Consensus 81 ~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~ 160 (355)
T 3sre_A 81 KSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIR 160 (355)
T ss_dssp -CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEEC
T ss_pred CCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccc
Confidence 699999999874 3555555443 134677777543 4 56665 36788899887542 222 22
Q ss_pred ecccceeEEEEEEE-ECCEEEEeecc----------------ccEEEEEEecCCCeEEEEeccCCCceeEEEEee-eCCc
Q psy7977 1119 CSHFNNIIALFLKV-KGDFILVGDLM----------------RSLTLLQYKTMEGSFEEISRDYNPNWMTSIEIL-DDEL 1180 (1225)
Q Consensus 1119 ~~~~~~~i~~~l~~-~g~~IlvGD~~----------------kSv~~l~y~~~~~~L~~~arD~~~~wvta~~~L-d~dt 1180 (1225)
...+. . +-.+.+ ..+.+++++.. ..=.+++|++ .++..++++..- ...+++= |..+
T Consensus 161 g~~~~-~-pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~--~~~~~~~~~l~~--pNGia~spDg~~ 234 (355)
T 3sre_A 161 HKLLP-S-VNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--NDVRVVAEGFDF--ANGINISPDGKY 234 (355)
T ss_dssp CTTCS-S-EEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT--TCCEEEEEEESS--EEEEEECTTSSE
T ss_pred cCCCC-C-CceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC--CeEEEeecCCcc--cCcceECCCCCE
Confidence 22222 1 344443 23566777652 2346778876 356666666422 2233332 2337
Q ss_pred EEEEcC-CCcEEEEEeCC
Q psy7977 1181 FLGAEN-SYNLFICQKDS 1197 (1225)
Q Consensus 1181 ~l~aD~-~gNl~vl~~~~ 1197 (1225)
+.++|. .+.|+++.+++
T Consensus 235 lYvadt~~~~I~~~~~~~ 252 (355)
T 3sre_A 235 VYIAELLAHKIHVYEKHA 252 (355)
T ss_dssp EEEEEGGGTEEEEEEECT
T ss_pred EEEEeCCCCeEEEEEECC
Confidence 778885 46677777764
No 226
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=22.79 E-value=7.9e+02 Score=27.00 Aligned_cols=137 Identities=10% Similarity=0.060 Sum_probs=0.0
Q ss_pred cceEEEEEEEeCCcEEEEEEEEecCce-eeeccccCeEEEE--eCCEEEEEEcCCCceeeeeecccceeEEEEEEEECCE
Q psy7977 1060 KQGRIIIFHYDDGKLQQIAEKEIKGAC-YSMCEFNGKLLAS--INSTVRLFEWTNEKELRLECSHFNNIIALFLKVKGDF 1136 (1225)
Q Consensus 1060 ~~GrI~vf~i~~~kL~lv~~~ev~G~v-~al~~f~G~LLa~--vg~~l~vy~l~~~~~L~~e~~~~~~~i~~~l~~~g~~ 1136 (1225)
..++|+.+....+..+.+.......+. .|+....|+|..+ ....|.++++..+..-......+..--.+.++..+++
T Consensus 93 ~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ 172 (349)
T 3v64_C 93 TLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGT 172 (349)
T ss_dssp TTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTE
T ss_pred cCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCe
Q ss_pred EEEeeccccEEEEEEecCCCeEEEEeccCCCceeEEEEee-eCCcEEEEcCCCcEEEEEeCCC
Q psy7977 1137 ILVGDLMRSLTLLQYKTMEGSFEEISRDYNPNWMTSIEIL-DDELFLGAENSYNLFICQKDSA 1198 (1225)
Q Consensus 1137 IlvGD~~kSv~~l~y~~~~~~L~~~arD~~~~wvta~~~L-d~dt~l~aD~~gNl~vl~~~~~ 1198 (1225)
+++.|....=.+.+++.+......+.. ..-.|..++.+= +.+.+..+|...+ .|.+++.+
T Consensus 173 ly~td~~~~~~I~r~~~dG~~~~~~~~-~~~~~PnGla~d~~~~~lY~aD~~~~-~I~~~~~d 233 (349)
T 3v64_C 173 IYWTDWGNTPRIEASSMDGSGRRIIAD-THLFWPNGLTIDYAGRRMYWVDAKHH-VIERANLD 233 (349)
T ss_dssp EEEEECSSSCEEEEEETTSCSCEESCC-SSCSCEEEEEEETTTTEEEEEETTTT-EEEEEETT
T ss_pred EEEeccCCCCEEEEEeCCCCCcEEEEE-CCCCCcceEEEeCCCCEEEEEECCCC-EEEEEeCC
No 227
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=22.59 E-value=1.1e+03 Score=28.63 Aligned_cols=206 Identities=9% Similarity=0.039 Sum_probs=0.0
Q ss_pred EEEEe-----cCCEEEEE--ECCeEEEEEeeccceeEEeeeccCceeEEEEeccCCCCCCCCccccCcEEEEEE------
Q psy7977 310 SVVSC-----NKNQVLCA--TGCDVYYLEVHGSEIKQLAHRALEYEVACLDISPLSNEETSSEPAKAQLAAVGL------ 376 (1225)
Q Consensus 310 v~As~-----n~~~VlVa--sgg~Lv~feid~~~L~ev~~~~l~~eIScLai~~~~~~~~~~~~~~s~~laVG~------ 376 (1225)
.++|. .+.++.|. .++.|..+.++..+...+-..+....+-.+++...++ ..+++++.
T Consensus 90 ~~~s~t~g~~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~---------~~~v~~~~~~~~p~ 160 (595)
T 1fwx_A 90 VHMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPR---------SNYVFCNGEDETPL 160 (595)
T ss_dssp EEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSB---------CSEEEEEECSCEES
T ss_pred cccCCCCCCcCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCC---------CcEEEEeccccccc
Q ss_pred -----------ecCCeEEEEeCCCcceEEeecCCCCCCcccEEEEeeCCeeEEEEEECC---------------CcEEEE
Q psy7977 377 -----------WTDISARLLSLPSLEEVCKEPLGGEIIPRSILMTCFEGHCYLLVALGD---------------GSMFYF 430 (1225)
Q Consensus 377 -----------w~d~tv~IlsL~~Le~v~~~~L~~~~~P~SIll~~l~~~~~LlVGl~n---------------G~L~~y 430 (1225)
+.++.+.+++..+++.+.+-.+++ -|+-+.+.. +.-++++...| +.+..+
T Consensus 161 ~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg--~pd~~~~sp--dGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~ 236 (595)
T 1fwx_A 161 VNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSG--NLDNCDADY--EGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVF 236 (595)
T ss_dssp SCSSSSTTCGGGEEEEEEEEETTTTEEEEEEEESS--CCCCEEECS--SSSEEEEEESCTTCCSSHHHHTCCSEEEEEEE
T ss_pred CCCCcccccccccCceEEEEECCCCeEEEEEEeCC--CccceEECC--CCCEEEEEecCcccCcchhhccccccceEEEe
Q ss_pred EEcCCCCccccceeeeecCccceEEEEee--CCc-eEEEEecCCcE-EEEEcCCeeEEeecccccccccccCCCCCCCCe
Q psy7977 431 SLDPASGRLTDKKKVTLGTQPTVLKTFRS--LST-TNVFACSDRPT-VIYSSNHKLVFSNVNLRQVNHMCSLNAESYPDS 506 (1225)
Q Consensus 431 ~ld~~sg~Ls~~k~~~LG~~pV~L~~~~~--~g~-~~Vfa~sdrP~-liyss~g~l~~~pl~~~~v~~~s~F~se~~p~g 506 (1225)
........+.+-+...++. |...-... +.. .+.+-.+..|. +-.+..|+..|..-...
T Consensus 237 ~~~~~~~~v~~Gk~~~i~~--V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s---------------- 298 (595)
T 1fwx_A 237 NIAEIEKAIAAGDYQELNG--VKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLS---------------- 298 (595)
T ss_dssp EHHHHHHHHHHTCSEEETT--EEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTS----------------
T ss_pred eccceeEeccCCCeeEECc--EEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCC----------------
Q ss_pred EEEEeCCeEEEEEEcCC----------CCeeeEEEeCCCcccEEEEecCCCEEEEE
Q psy7977 507 LALATDSTFTFGTIDEI----------QKLHIRTVPLGEAPRRIAYQESSQTFGVI 552 (1225)
Q Consensus 507 lv~vs~~~LrI~~i~~~----------~~l~ir~IpLg~TprrIay~p~s~~~vV~ 552 (1225)
+.+.+..+.+. ..-....+++|.-|+.++|+|...+|+..
T Consensus 299 ------~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP~h~aF~~dG~aY~t~ 348 (595)
T 1fwx_A 299 ------PTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDGRGNAYTSL 348 (595)
T ss_dssp ------SBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCEEEEEECTTSEEEEEE
T ss_pred ------CeEEEEECcccccccccccCcccceEEEcCCCCCcceEEECCCCeEEEEE
No 228
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=22.28 E-value=7.3e+02 Score=26.40 Aligned_cols=129 Identities=12% Similarity=0.048 Sum_probs=70.4
Q ss_pred ceEEEEEEEeCCcEEEEEEEEecCceeeeccc-cC-eEEEE--eCCEEEEEEcCCCc--eee-eeecccceeEEEEEEEE
Q psy7977 1061 QGRIIIFHYDDGKLQQIAEKEIKGACYSMCEF-NG-KLLAS--INSTVRLFEWTNEK--ELR-LECSHFNNIIALFLKVK 1133 (1225)
Q Consensus 1061 ~GrI~vf~i~~~kL~lv~~~ev~G~v~al~~f-~G-~LLa~--vg~~l~vy~l~~~~--~L~-~e~~~~~~~i~~~l~~~ 1133 (1225)
.|+|+.|+...++++.+.. .. ..+..|+-- +| +|.++ -+++|.+|++...+ ..+ .....-|+- +.++..
T Consensus 164 ~g~v~~~d~~~~~~~~~~~-~~-~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~gP~g--i~~d~~ 239 (322)
T 2fp8_A 164 TGRLIKYDPSTKETTLLLK-EL-HVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPNPGN--IKRNAD 239 (322)
T ss_dssp CEEEEEEETTTTEEEEEEE-EE-SCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSSEEE--EEECTT
T ss_pred CceEEEEeCCCCEEEEecc-CC-ccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCCCCC--eEECCC
Confidence 5888888765556654432 22 234444322 45 46666 34789999987432 122 111111332 233334
Q ss_pred CCEEEEeeccc---------cEEEEEEecCCCeEEEEeccCC--CceeEEEEeeeCCcEEEEcCCCc-EEEEEe
Q psy7977 1134 GDFILVGDLMR---------SLTLLQYKTMEGSFEEISRDYN--PNWMTSIEILDDELFLGAENSYN-LFICQK 1195 (1225)
Q Consensus 1134 g~~IlvGD~~k---------Sv~~l~y~~~~~~L~~~arD~~--~~wvta~~~Ld~dt~l~aD~~gN-l~vl~~ 1195 (1225)
| .++|++... .-.+.+|+++...+..+..... ..+++++.+ +.+++.+++...| |.+++.
T Consensus 240 G-~l~va~~~~~~~~~~~~~~~~v~~~d~~G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~ 311 (322)
T 2fp8_A 240 G-HFWVSSSEELDGNMHGRVDPKGIKFDEFGNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVY 311 (322)
T ss_dssp S-CEEEEEEEETTSSTTSCEEEEEEEECTTSCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC
T ss_pred C-CEEEEecCcccccccCCCccEEEEECCCCCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEec
Confidence 4 488888762 4568889986555555553221 467777655 6677777776544 444443
No 229
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=21.96 E-value=6.6e+02 Score=25.82 Aligned_cols=101 Identities=13% Similarity=0.067 Sum_probs=54.8
Q ss_pred CCEEEEEE--CCeEEEEEeeccceeEEeeeccCceeEEEEeccCCCCCCCCccccCcEEEEEEecCCeEEEEeCCCc--c
Q psy7977 316 KNQVLCAT--GCDVYYLEVHGSEIKQLAHRALEYEVACLDISPLSNEETSSEPAKAQLAAVGLWTDISARLLSLPSL--E 391 (1225)
Q Consensus 316 ~~~VlVas--gg~Lv~feid~~~L~ev~~~~l~~eIScLai~~~~~~~~~~~~~~s~~laVG~w~d~tv~IlsL~~L--e 391 (1225)
+..+.+++ ++.|..+.++......+....+ ..+.++++.+. ...+.+..+.+++|.+++++.- +
T Consensus 47 ~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~-~~p~~ia~d~~-----------~~~lyv~d~~~~~I~~~~~~g~~~~ 114 (267)
T 1npe_A 47 DKVVYWTDISEPSIGRASLHGGEPTTIIRQDL-GSPEGIALDHL-----------GRTIFWTDSQLDRIEVAKMDGTQRR 114 (267)
T ss_dssp TTEEEEEETTTTEEEEEESSSCCCEEEECTTC-CCEEEEEEETT-----------TTEEEEEETTTTEEEEEETTSCSCE
T ss_pred CCEEEEEECCCCEEEEEecCCCCcEEEEECCC-CCccEEEEEec-----------CCeEEEEECCCCEEEEEEcCCCCEE
Confidence 45666662 4667666655333222211111 35667777542 3567777776789999988642 2
Q ss_pred eEEeecCCCCCCcccEEEEeeCCeeEEEEEEC---CCcEEEEEEc
Q psy7977 392 EVCKEPLGGEIIPRSILMTCFEGHCYLLVALG---DGSMFYFSLD 433 (1225)
Q Consensus 392 ~v~~~~L~~~~~P~SIll~~l~~~~~LlVGl~---nG~L~~y~ld 433 (1225)
.+....+ ..|..+++..-++ +|++.-. ++.+.++.++
T Consensus 115 ~~~~~~~---~~P~~i~vd~~~g--~lyv~~~~~~~~~I~~~~~d 154 (267)
T 1npe_A 115 VLFDTGL---VNPRGIVTDPVRG--NLYWTDWNRDNPKIETSHMD 154 (267)
T ss_dssp EEECSSC---SSEEEEEEETTTT--EEEEEECCSSSCEEEEEETT
T ss_pred EEEECCC---CCccEEEEeeCCC--EEEEEECCCCCcEEEEEecC
Confidence 2221122 4577777664333 3444443 4677777665
No 230
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=21.31 E-value=1.1e+03 Score=28.07 Aligned_cols=104 Identities=12% Similarity=0.114 Sum_probs=58.6
Q ss_pred EEEEEECCCCcEEEEEECCCCC--ceEEEEEEEecCCCCeEEEEEeeeeCCCCCCCcceEEEEEEEeCCcEEEEEEEEe-
Q psy7977 1006 NLLIIDQNTFEILHAHQLFPGE--YALSLISSKFGEDPNTYFVLGTAVVHPEENEPKQGRIIIFHYDDGKLQQIAEKEI- 1082 (1225)
Q Consensus 1006 ~irlvdp~t~~~i~~~eL~~nE--~~~si~~v~~~~~~~~~lvVGTa~~~~eed~~~~GrI~vf~i~~~kL~lv~~~ev- 1082 (1225)
.|++.|..+.+....+.-...+ .+.+ +.|..++ .+++.+...-... +....|.|++|++..++++.+....-
T Consensus 38 ~i~~~d~~~g~~~~~~~~~~~~~~~v~~---~~~SpDg-~~l~~~~~~~~~~-~~~~~~~i~~~d~~~~~~~~l~~~~~~ 112 (723)
T 1xfd_A 38 TVRLWNVETNTSTVLIEGKKIESLRAIR---YEISPDR-EYALFSYNVEPIY-QHSYTGYYVLSKIPHGDPQSLDPPEVS 112 (723)
T ss_dssp CEEEBCGGGCCCEEEECTTTTTTTTCSE---EEECTTS-SEEEEEESCCCCS-SSCCCSEEEEEESSSCCCEECCCTTCC
T ss_pred CEEEEECCCCcEEEEeccccccccccce---EEECCCC-CEEEEEecCccce-eecceeeEEEEECCCCceEeccCCccc
Confidence 6899999888766555432221 1333 4565544 5666664321111 22345899999998776654432211
Q ss_pred cCceeeeccc--cCe-EEEEeCCEEEEEEcCCCcee
Q psy7977 1083 KGACYSMCEF--NGK-LLASINSTVRLFEWTNEKEL 1115 (1225)
Q Consensus 1083 ~G~v~al~~f--~G~-LLa~vg~~l~vy~l~~~~~L 1115 (1225)
.+.+.+++ | +|+ |+.+.+.+|++|++...+..
T Consensus 113 ~~~~~~~~-~SPdG~~la~~~~~~i~~~~~~~g~~~ 147 (723)
T 1xfd_A 113 NAKLQYAG-WGPKGQQLIFIFENNIYYCAHVGKQAI 147 (723)
T ss_dssp SCCCSBCC-BCSSTTCEEEEETTEEEEESSSSSCCE
T ss_pred cccccccE-ECCCCCEEEEEECCeEEEEECCCCceE
Confidence 11244433 4 575 55556679999998755433
No 231
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=20.18 E-value=6.8e+02 Score=25.27 Aligned_cols=72 Identities=21% Similarity=0.332 Sum_probs=41.9
Q ss_pred cCcceeEEEecCCeEEEEeecCCeEEEEEeeCCCCCCCceEEEeeeeccccceeeEEeeccccCCccEEEEEecCCCccE
Q psy7977 119 ISIPECLTYLDNGVVFVGSRLGDSQLVKLNRSPDENGTYVSVMESFTNLAPIIDMVVVDLERQGQGQLVTCSGGFKEGSL 198 (1225)
Q Consensus 119 is~~SsL~~L~~g~LFvGS~~GDS~L~~i~~~~ddd~~~l~v~d~l~NlgPI~D~~v~d~~~~~~~qLva~sG~g~~GsL 198 (1225)
...|.+++.-.+|.+|++.. ++.++++...+. ..... .........++++.. ...|+++... ++.+
T Consensus 66 ~~~p~~i~~~~~g~l~v~~~--~~~i~~~d~~~~----~~~~~-~~~~~~~p~~i~~~~-----~g~l~v~~~~--~~~i 131 (270)
T 1rwi_B 66 LYQPQGLAVDGAGTVYVTDF--NNRVVTLAAGSN----NQTVL-PFDGLNYPEGLAVDT-----QGAVYVADRG--NNRV 131 (270)
T ss_dssp CCSCCCEEECTTCCEEEEET--TTEEEEECTTCS----CCEEC-CCCSCSSEEEEEECT-----TCCEEEEEGG--GTEE
T ss_pred cCCcceeEECCCCCEEEEcC--CCEEEEEeCCCc----eEeee-ecCCcCCCcceEECC-----CCCEEEEECC--CCEE
Confidence 34678888887888999876 668888875431 11111 112333445665532 2357776542 4567
Q ss_pred EEEeec
Q psy7977 199 RIIRNG 204 (1225)
Q Consensus 199 rilR~G 204 (1225)
..+..+
T Consensus 132 ~~~~~~ 137 (270)
T 1rwi_B 132 VKLAAG 137 (270)
T ss_dssp EEECTT
T ss_pred EEEECC
Confidence 777544
Done!