BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>psy7977
EGSLRIIRNGIGIEEHACIDLPGIKGIWALSIGSPKNLDNTLVLSFVGHTRVLTLSGAEW
GFHLLRGFSSLGSLWNGWSERYLLGDLAGRLFMLLLEKEEKMDGTFSVKEPKVELLGEIS
IPECLTYLDNGVVFVGSRLGDSQLVKLNRSPDENGTYVSVMESFTNLAPIIDMVVVDLER
QGQGQLVTCSGGFKEGSLRIIRNGIGIEEHACIDLPGIKGIWALSIGSPKNLDNTLVLSF
VGHTRVLTLSGAEVEETEMGGFTSDQQTFYCGNVDPRTVLQVTPSAAILISTESKARVSS
WEPPNGKSISVVSCNKNQVLCATGCDVYYLEVHGSEIKQLAHRALEYEVACLDISPLSNE
ETSSEPAKAQLAAVGLWTDISARLLSLPSLEEVCKEPLGGEIIPRSILMTCFEGHCYLLV
ALGDGSMFYFSLDPASGRLTDKKKVTLGTQPTVLKTFRSLSTTNVFACSDRPTVIYSSNH
KLVFSNVNLRQVNHMCSLNAESYPDSLALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRI
AYQESSQTFGVITTRIDIQEADGSTPVRPSASTQAQNTTSSTISSLSYIKPGSTKQSTAN
QPADFNMEVEVHNLLIIDQNTFERNFTSSTDLNLVVAKNNRIEIHTVTPEGLRPVKEIFL
YGKIAVMKFFRGPTDKKDLLFIITQRTDLNLVVAKNNRIEIHTVTPEGLRPVKEIFLYGK
IAVMKFFRGPTDKKDLLFIITQRYNAMILECRGDIDNLEILTKAHGNVSDRIGKPSENGI
IAIIDPEARVIGLRLYNGLFKIIPLEKDNFELKASSIRMEELEIQDVQFLHGCQNPTIIC
IHQDVNGRHVKTHEISLKEKEFTKTPWKQDNIEMEASLVIPVPEPLGGAIIIGQESILYH
SGKSYVAVAPQIIKSSTIVCYAKVDANGERYLLGDLAGRLFMLLLEKEEKMDGTFSVKEP
KVELLGEHCKGPVVEMSSLSYIKPGSTKQSTANQPADFNMEVEVHNLLIIDQNTFEILHA
HQLFPGEYALSLISSKFGEDPNTYFVLGTAVVHPEENEPKQGRIIIFHYDDGKLQQIAEK
EIKGACYSMCEFNGKLLASINSTVRLFEWTNEKELRLECSHFNNIIALFLKVKGDFILVG
DLMRSLTLLQYKTMEGSFEEISRDYNPNWMTSIEILDDELFLGAENSYNLFICQKDSAAT
SDEDRTHLQEVGTVHLVGDGLVQCR

High Scoring Gene Products

Symbol, full name Information P value
ddb1
DNA damage-binding protein 1 		protein from Xenopus laevis 1.3e-270
ddb1
damage specific DNA binding protein 1 		gene_product from Danio rerio 3.9e-267
pic
piccolo 		protein from Drosophila melanogaster 9.6e-253
DDB1
DNA damage-binding protein 1 		protein from Gallus gallus 5.5e-193
DDB1
DNA damage-binding protein 1 		protein from Gallus gallus 5.5e-193
Ddb1
damage specific DNA binding protein 1 		protein from Mus musculus 3.9e-192
DDB1
Uncharacterized protein 		protein from Canis lupus familiaris 3.9e-192
DDB1
Uncharacterized protein 		protein from Canis lupus familiaris 3.9e-192
LOC100522239
Uncharacterized protein 		protein from Sus scrofa 3.9e-192
DDB1
DNA damage-binding protein 1 		protein from Bos taurus 3.9e-192
DDB1
Uncharacterized protein 		protein from Homo sapiens 3.9e-192
DDB1
DNA damage-binding protein 1 		protein from Homo sapiens 3.9e-192
DDB1
DNA damage-binding protein 1 		protein from Chlorocebus aethiops 3.9e-192
Ddb1
damage-specific DNA binding protein 1, 127kDa 		gene from Rattus norvegicus 2.7e-191
DDB1
DNA damage-binding protein 1 		protein from Pongo abelii 3.5e-191
DDB1A
AT4G05420 		protein from Arabidopsis thaliana 1.5e-188
DDB1B
damaged DNA binding protein 1B 		protein from Arabidopsis thaliana 1.3e-182
ddb-1 gene from Caenorhabditis elegans 1.1e-146
ddb-1
DNA damage-binding protein 1 		protein from Caenorhabditis elegans 1.1e-146
repE
UV-damaged DNA binding protein1 		gene from Dictyostelium discoideum 4.5e-131
DDB1
cDNA FLJ52436, highly similar to DNA damage-binding protein 1 		protein from Homo sapiens 9.1e-109
DDB1
DNA damage-binding protein 1 		protein from Homo sapiens 2.5e-88
DDB1
DNA damage-binding protein 1 		protein from Homo sapiens 2.4e-85
DDB1
DNA damage-binding protein 1 		protein from Homo sapiens 5.0e-78
DDB1
DNA damage-binding protein 1 		protein from Homo sapiens 5.7e-68
DDB1
DNA damage-binding protein 1 		protein from Homo sapiens 1.1e-54
sf3b3
splicing factor 3B subunit 3 		gene from Dictyostelium discoideum 3.2e-44
DDB1
DNA damage-binding protein 1 		protein from Homo sapiens 5.7e-40
MGG_16867
Uncharacterized protein 		protein from Magnaporthe oryzae 70-15 3.1e-39
DDB1
DNA damage-binding protein 1 		protein from Homo sapiens 4.3e-38
SF3B3
Uncharacterized protein 		protein from Canis lupus familiaris 8.1e-32
SF3B3
Splicing factor 3B subunit 3 		protein from Bos taurus 1.0e-31
SF3B3
Splicing factor 3B subunit 3 		protein from Homo sapiens 1.0e-31
Sf3b3
splicing factor 3b, subunit 3 		protein from Mus musculus 1.6e-31
sf3b3
splicing factor 3b, subunit 3 		gene_product from Danio rerio 1.7e-31
SAP130a
AT3G55200 		protein from Arabidopsis thaliana 7.1e-31
SAP130b
AT3G55220 		protein from Arabidopsis thaliana 7.1e-31
Sf3b3
splicing factor 3b, subunit 3 		gene from Rattus norvegicus 1.1e-30
CG13900 protein from Drosophila melanogaster 1.8e-29
teg-4 gene from Caenorhabditis elegans 1.4e-27
PFL1680w
splicing factor 3b, subunit 3, 130kD, putative 		gene from Plasmodium falciparum 1.6e-27
PFL1680w
Splicing factor 3b, subunit 3, 130kD, putative 		protein from Plasmodium falciparum 3D7 1.6e-27
DDB1
DNA damage-binding protein 1 		protein from Homo sapiens 2.5e-21
AT3G11960 protein from Arabidopsis thaliana 8.1e-18
DDB1
DNA damage-binding protein 1 		protein from Homo sapiens 1.5e-13
orf19.5391 gene_product from Candida albicans 5.4e-13
cpsf1
cleavage and polyadenylation specific factor 1 		gene_product from Danio rerio 2.2e-11
CPSF160
cleavage and polyadenylation specificity factor 160 		protein from Arabidopsis thaliana 3.6e-11
CPSF1
Uncharacterized protein 		protein from Canis lupus familiaris 1.2e-09
CPSF1
Cleavage and polyadenylation specificity factor subunit 1 		protein from Bos taurus 1.9e-09
CPSF1
Cleavage and polyadenylation specificity factor subunit 1 		protein from Homo sapiens 2.3e-09
Cpsf1
cleavage and polyadenylation specific factor 1 		protein from Mus musculus 2.8e-09
CPSF1
Uncharacterized protein 		protein from Canis lupus familiaris 3.7e-09
cpsf1
cleavage and polyadenylation specificity factor 160 kDa subunit 		gene from Dictyostelium discoideum 1.4e-08
F1RSN8
Uncharacterized protein 		protein from Sus scrofa 7.1e-08
Cpsf160
Cleavage and polyadenylation specificity factor 160 		protein from Drosophila melanogaster 3.3e-07
LOC100512659
Uncharacterized protein 		protein from Sus scrofa 8.9e-06
cpsf-1 gene from Caenorhabditis elegans 9.8e-06
cpsf-1
Probable cleavage and polyadenylation specificity factor subunit 1 		protein from Caenorhabditis elegans 9.8e-06
SF3B3
Uncharacterized protein 		protein from Gallus gallus 7.5e-05
orf19.2760 gene_product from Candida albicans 0.00021
CFT1
Protein CFT1 		protein from Candida albicans SC5314 0.00021
RSE1
Protein involved in pre-mRNA splicing 		gene from Saccharomyces cerevisiae 0.00040

The BLAST search returned 5 gene products which did not match your query constraints. Please see the full BLAST report below for the details.

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  psy7977
        (1225 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

UNIPROTKB|Q6P6Z0 - symbol:ddb1 "DNA damage-binding protei...  1725  1.3e-270  2
ZFIN|ZDB-GENE-040426-1272 - symbol:ddb1 "damage specific ...  1689  3.9e-267  2
FB|FBgn0260962 - symbol:pic "piccolo" species:7227 "Droso...  1683  9.6e-253  2
UNIPROTKB|F1NVV2 - symbol:DDB1 "DNA damage-binding protei...  1731  5.5e-193  2
UNIPROTKB|F1NVV3 - symbol:DDB1 "DNA damage-binding protei...  1731  5.5e-193  2
UNIPROTKB|F1P4I8 - symbol:DDB1 "DNA damage-binding protei...  1731  5.5e-193  2
UNIPROTKB|Q805F9 - symbol:DDB1 "DNA damage-binding protei...  1731  5.5e-193  2
MGI|MGI:1202384 - symbol:Ddb1 "damage specific DNA bindin...  1731  3.9e-192  2
UNIPROTKB|E2R9E3 - symbol:DDB1 "Uncharacterized protein" ...  1730  3.9e-192  2
UNIPROTKB|J9NVR7 - symbol:DDB1 "Uncharacterized protein" ...  1730  3.9e-192  2
UNIPROTKB|F1RIE2 - symbol:DDB1 "Uncharacterized protein" ...  1729  3.9e-192  2
UNIPROTKB|A1A4K3 - symbol:DDB1 "DNA damage-binding protei...  1726  3.9e-192  2
UNIPROTKB|F5GY55 - symbol:DDB1 "Uncharacterized protein" ...  1724  3.9e-192  2
UNIPROTKB|Q16531 - symbol:DDB1 "DNA damage-binding protei...  1724  3.9e-192  2
UNIPROTKB|P33194 - symbol:DDB1 "DNA damage-binding protei...  1724  3.9e-192  2
RGD|621889 - symbol:Ddb1 "damage-specific DNA binding pro...  1703  2.7e-191  2
UNIPROTKB|Q5R649 - symbol:DDB1 "DNA damage-binding protei...  1723  3.5e-191  2
TAIR|locus:2115909 - symbol:DDB1A "damaged DNA binding pr...  1255  1.5e-188  2
TAIR|locus:2127368 - symbol:DDB1B "damaged DNA binding pr...  1234  1.3e-182  2
WB|WBGene00010890 - symbol:ddb-1 species:6239 "Caenorhabd...   939  1.1e-146  2
UNIPROTKB|Q21554 - symbol:ddb-1 "DNA damage-binding prote...   939  1.1e-146  2
DICTYBASE|DDB_G0286013 - symbol:repE "UV-damaged DNA bind...   730  4.5e-131  4
UNIPROTKB|B4DG00 - symbol:DDB1 "cDNA FLJ52436, highly sim...   924  9.1e-109  2
UNIPROTKB|F1M680 - symbol:Ddb1 "DNA damage-binding protei...   923  1.1e-92   1
UNIPROTKB|F5H6C5 - symbol:DDB1 "DNA damage-binding protei...   882  2.5e-88   1
UNIPROTKB|F5H581 - symbol:DDB1 "DNA damage-binding protei...   854  2.4e-85   1
UNIPROTKB|F5H775 - symbol:DDB1 "DNA damage-binding protei...   790  5.0e-78   1
UNIPROTKB|F5H0Y5 - symbol:DDB1 "DNA damage-binding protei...   698  5.7e-68   1
ASPGD|ASPL0000052925 - symbol:ddbA species:162425 "Emeric...   568  1.4e-66   2
UNIPROTKB|F5H2L3 - symbol:DDB1 "DNA damage-binding protei...   575  1.1e-54   1
POMBASE|SPAC17H9.10c - symbol:ddb1 "damaged DNA binding p...   265  2.6e-45   3
DICTYBASE|DDB_G0282569 - symbol:sf3b3 "splicing factor 3B...   254  3.2e-44   4
UNIPROTKB|F5H198 - symbol:DDB1 "DNA damage-binding protei...   297  5.7e-40   2
UNIPROTKB|G4N4E2 - symbol:MGG_16867 "Uncharacterized prot...   388  3.1e-39   3
UNIPROTKB|F5GZY8 - symbol:DDB1 "DNA damage-binding protei...   420  4.3e-38   1
UNIPROTKB|E9PT66 - symbol:Sf3b3 "Protein Sf3b3" species:1...   305  6.9e-32   3
UNIPROTKB|E2RR33 - symbol:SF3B3 "Uncharacterized protein"...   305  8.1e-32   3
UNIPROTKB|A0JN52 - symbol:SF3B3 "Splicing factor 3B subun...   305  1.0e-31   3
UNIPROTKB|Q15393 - symbol:SF3B3 "Splicing factor 3B subun...   305  1.0e-31   3
MGI|MGI:1289341 - symbol:Sf3b3 "splicing factor 3b, subun...   305  1.6e-31   3
ZFIN|ZDB-GENE-040426-2901 - symbol:sf3b3 "splicing factor...   299  1.7e-31   3
TAIR|locus:2100616 - symbol:SAP130a "spliceosome-associat...   266  7.1e-31   2
TAIR|locus:2100646 - symbol:SAP130b "spliceosome-associat...   266  7.1e-31   2
RGD|1311636 - symbol:Sf3b3 "splicing factor 3b, subunit 3...   305  1.1e-30   3
ASPGD|ASPL0000031473 - symbol:AN5452 species:162425 "Emer...   262  2.4e-30   2
UNIPROTKB|F1P529 - symbol:SF3B3 "Uncharacterized protein"...   305  1.3e-29   3
FB|FBgn0035162 - symbol:CG13900 species:7227 "Drosophila ...   239  1.8e-29   4
POMBASE|SPAPJ698.03c - symbol:prp12 "U2 snRNP-associated ...   265  2.2e-29   3
WB|WBGene00019323 - symbol:teg-4 species:6239 "Caenorhabd...   306  1.4e-27   3
GENEDB_PFALCIPARUM|PFL1680w - symbol:PFL1680w "splicing f...   254  1.6e-27   4
UNIPROTKB|Q8I574 - symbol:PFL1680w "Splicing factor 3b, s...   254  1.6e-27   4
UNIPROTKB|F5GYG8 - symbol:DDB1 "DNA damage-binding protei...   263  2.5e-21   1
TAIR|locus:2081576 - symbol:AT3G11960 species:3702 "Arabi...   219  8.1e-18   4
UNIPROTKB|F5GZ34 - symbol:DDB1 "DNA damage-binding protei...   190  1.5e-13   1
CGD|CAL0004426 - symbol:orf19.5391 species:5476 "Candida ...   170  5.4e-13   2
ZFIN|ZDB-GENE-040709-2 - symbol:cpsf1 "cleavage and polya...   127  2.2e-11   5
TAIR|locus:2153122 - symbol:CPSF160 "cleavage and polyade...   127  3.6e-11   3
UNIPROTKB|J9P418 - symbol:CPSF1 "Uncharacterized protein"...   129  1.2e-09   5
UNIPROTKB|Q10569 - symbol:CPSF1 "Cleavage and polyadenyla...   129  1.9e-09   5
UNIPROTKB|Q10570 - symbol:CPSF1 "Cleavage and polyadenyla...   129  2.3e-09   5
MGI|MGI:2679722 - symbol:Cpsf1 "cleavage and polyadenylat...   129  2.8e-09   5
UNIPROTKB|F1PC28 - symbol:CPSF1 "Uncharacterized protein"...   129  3.7e-09   5
POMBASE|SPCC11E10.08 - symbol:rik1 "silencing protein Rik...    99  1.3e-08   3
DICTYBASE|DDB_G0281585 - symbol:cpsf1 "cleavage and polya...   109  1.4e-08   6
UNIPROTKB|F1RSN8 - symbol:CPSF1 "Uncharacterized protein"...   129  7.1e-08   5
FB|FBgn0024698 - symbol:Cpsf160 "Cleavage and polyadenyla...   105  3.3e-07   4
UNIPROTKB|F1S419 - symbol:LOC100512659 "Uncharacterized p...   137  8.9e-06   1
WB|WBGene00022301 - symbol:cpsf-1 species:6239 "Caenorhab...   136  9.8e-06   2
UNIPROTKB|Q9N4C2 - symbol:cpsf-1 "Probable cleavage and p...   136  9.8e-06   2
UNIPROTKB|F1NZF7 - symbol:SF3B3 "Uncharacterized protein"...   132  7.5e-05   1
CGD|CAL0004251 - symbol:orf19.2760 species:5476 "Candida ...    98  0.00021   3
UNIPROTKB|Q5AFT3 - symbol:CFT1 "Protein CFT1" species:237...    98  0.00021   3
SGD|S000004513 - symbol:RSE1 "Protein involved in pre-mRN...   112  0.00040   2


>UNIPROTKB|Q6P6Z0 [details] [associations]
            symbol:ddb1 "DNA damage-binding protein 1" species:8355
            "Xenopus laevis" [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
            "cytoplasm" evidence=ISS] [GO:0031464 "Cul4A-RING ubiquitin ligase
            complex" evidence=ISS] [GO:0031465 "Cul4B-RING ubiquitin ligase
            complex" evidence=ISS] [GO:0043161 "proteasomal ubiquitin-dependent
            protein catabolic process" evidence=ISS] [GO:0080008 "Cul4-RING
            ubiquitin ligase complex" evidence=ISS] InterPro:IPR004871
            InterPro:IPR015943 Pfam:PF03178 UniPathway:UPA00143 GO:GO:0005634
            GO:GO:0005737 GO:GO:0043161 Gene3D:2.130.10.10 GO:GO:0003677
            GO:GO:0006281 GO:GO:0016567 GO:GO:0031464 GO:GO:0031465 KO:K10610
            CTD:1642 HOVERGEN:HBG005460 HSSP:Q16531 EMBL:BC061946
            RefSeq:NP_001083624.1 UniGene:Xl.23906 PRIDE:Q6P6Z0 GeneID:399026
            KEGG:xla:399026 Xenbase:XB-GENE-967911 Uniprot:Q6P6Z0
        Length = 1140

 Score = 1725 (612.3 bits), Expect = 1.3e-270, Sum P(2) = 1.3e-270
 Identities = 345/549 (62%), Positives = 414/549 (75%)

Query:    76 NGWSERYLLGDLAGRLFXXXXXXXXXXDGTFSVKEPKVELLGEISIPECLTYLDNGVVFV 135
             NG   RYLLGD+ GRLF          DG+ ++K+ +VELLGE SI ECLTYLDNGVVFV
Sbjct:   267 NG--SRYLLGDMEGRLFMLLLEKEEQMDGSVTLKDLRVELLGETSIAECLTYLDNGVVFV 324

Query:   136 GSRLGDSQLVKLNRSPDENGTYVSVMESFTNLAPIIDMVVVDLERQGQGQLVTCSGGFKE 195
             GSRLGDSQLVKL    +E G+YV VME+FTNL PI+DM VVDLERQGQGQLVTCSG FKE
Sbjct:   325 GSRLGDSQLVKLTTESNEQGSYVVVMETFTNLGPIVDMCVVDLERQGQGQLVTCSGAFKE 384

Query:   196 GSLRIIRNGIGIEEHACIDLPGIKGIWALSIGSPKNLDNTLVLSFVGHTRVLTLSGAEVE 255
             GSLRIIRNGIGI EHA IDLPGIKG+W L + + ++ D+TLVLSFVG TRVLTL+G EVE
Sbjct:   385 GSLRIIRNGIGIHEHASIDLPGIKGLWPLRVAADRDTDDTLVLSFVGQTRVLTLTGEEVE 444

Query:   256 ETEMGGFTSDQQTFYCGNVDPRTVLQVTPSAAILISTESKARVSSWEPPNGKSISVVSCN 315
             ET++ GF  DQQTF+CGNV  + ++Q+T ++  L+S   +  VS W+ P G+ +SV SCN
Sbjct:   445 ETDLAGFVDDQQTFFCGNVAHQQLIQITSASVRLVSQNPQNLVSEWKEPQGRKVSVCSCN 504

Query:   316 KNQVLCATGCDVYYLEVHGSEIKQLAHRALEYEVACLDISPLSNEETSSEPAKAQLAAVG 375
               QVL A G  +YYLE+H  E++Q +   +E+EVACLD++PL   +T S      L A+G
Sbjct:   505 SRQVLLAVGRVLYYLEIHPGELRQTSCTEMEHEVACLDVTPLGGNDTLSS-----LCAIG 559

Query:   376 LWTDISARLLSLPSLEEVCKEPLGGEIIPRSILMTCFEGHCYLLVALGDGSMFYFSLDPA 435
             LWTDISAR+LSLP  + + KE LGGEIIPRSILMT FE   YLL ALGDG++FYFSL+  
Sbjct:   560 LWTDISARILSLPGFQLLHKEMLGGEIIPRSILMTSFESSHYLLCALGDGALFYFSLNTD 619

Query:   436 SGRLTDKKKVTLGTQPTVLKTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLRQVNHM 495
             +G L+D+KKVTLGTQPTVL+TFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNL++VN+M
Sbjct:   620 TGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLKEVNYM 679

Query:   496 CSLNAESYPDSLALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTR 555
             C LN+E YPDSLALA +ST T GTIDEIQKLHIRTVPL E+PR+I YQE SQ FGV+++R
Sbjct:   680 CPLNSEGYPDSLALANNSTLTIGTIDEIQKLHIRTVPLFESPRKICYQEVSQCFGVLSSR 739

Query:   556 IDIQEADG-STPVRPXXXXXXXXXXXXXXXXXXYIKPGSTKQSTANQPADFNMEVEVHNL 614
             I++Q+A G S+P+RP                      GST     +    F  EVEVHNL
Sbjct:   740 IEVQDASGGSSPLRPSASTQALSSSVSCSKLFS----GSTSPHETS----FGEEVEVHNL 791

Query:   615 LIIDQNTFE 623
             LIIDQ+TFE
Sbjct:   792 LIIDQHTFE 800

 Score = 966 (345.1 bits), Expect = 2.4e-190, Sum P(2) = 2.4e-190
 Identities = 181/284 (63%), Positives = 228/284 (80%)

Query:   684 TQRTDLNLVVAKNNRIEIHTVTPEGLRPVKEIFLYGKIAVMKFFRGPTDKKDLLFIITQR 743
             T   DLNL++AKN R+EI+ VTPEGLRPVKE+ +YGKIAVM+ FR   + KDLLFI+T +
Sbjct:    24 TSEDDLNLLIAKNTRLEIYVVTPEGLRPVKEVGMYGKIAVMELFRPKGESKDLLFILTAK 83

Query:   744 YNAMILECRGDIDNLEILTKAHGNVSDRIGKPSENGIIAIIDPEARVIGLRLYNGLFKII 803
             YNA ILE +   D+++I+T+AHGNV DRIG+PSE GII IIDP+ R+IGLRLY+GLFK+I
Sbjct:    84 YNACILEYKQSGDSIDIITRAHGNVQDRIGRPSETGIIGIIDPDCRMIGLRLYDGLFKVI 143

Query:   804 PLEKDNFELKASSIRMEELEIQDVQFLHGCQNPTIICIHQDVNGRHVKTHEISLKEKEFT 863
             PLE+DN ELKA +IR+EEL + DV+FL+ CQ PTI  ++QD  GRHVKT+E+SL+EKEF+
Sbjct:   144 PLERDNKELKAFNIRLEELHVIDVKFLYSCQAPTICFVYQDPQGRHVKTYEVSLREKEFS 203

Query:   864 KTPWKQDNIEMEASLVIPVPEPLGGAIIIGQESILYHSGKSYVAVAPQIIKSSTIVCYAK 923
             K PWKQ+N+E EAS+VI VPEP GGAIIIGQESI YH+G  Y+A+AP IIK STIVC+ +
Sbjct:   204 KGPWKQENVEAEASMVIAVPEPFGGAIIIGQESITYHNGDKYLAIAPPIIKQSTIVCHNR 263

Query:   924 VDANGERYLLGDLAGRLFXXXXXXXXXXDGTFSVKEPKVELLGE 967
             VD NG RYLLGD+ GRLF          DG+ ++K+ +VELLGE
Sbjct:   264 VDVNGSRYLLGDMEGRLFMLLLEKEEQMDGSVTLKDLRVELLGE 307

 Score = 901 (322.2 bits), Expect = 1.3e-270, Sum P(2) = 1.3e-270
 Identities = 164/227 (72%), Positives = 196/227 (86%)

Query:   990 STANQPADFNMEVEVHNLLIIDQNTFEILHAHQLFPGEYALSLISSKFGEDPNTYFVLGT 1049
             ST+     F  EVEVHNLLIIDQ+TFE+LH HQ    EY LSL+S K G+DP TYFV+GT
Sbjct:   774 STSPHETSFGEEVEVHNLLIIDQHTFEVLHTHQFLQNEYTLSLVSCKLGKDPTTYFVVGT 833

Query:  1050 AVVHPEENEPKQGRIIIFHYDDGKLQQIAEKEIKGACYSMCEFNGKLLASINSTVRLFEW 1109
             A+V+P+E EPKQGRI++F Y+DGKLQ +AEKE+KGA YSM EFNGKLLASINSTVRL+EW
Sbjct:   834 AMVYPDEAEPKQGRIVVFQYNDGKLQTVAEKEVKGAVYSMVEFNGKLLASINSTVRLYEW 893

Query:  1110 TNEKELRLECSHFNNIIALFLKVKGDFILVGDLMRSLTLLQYKTMEGSFEEISRDYNPNW 1169
             T EKELR EC+H+NNI+AL+LK KGDFILVGDLMRS+ LL YK MEG+FEEI+RD+NPNW
Sbjct:   894 TAEKELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNW 953

Query:  1170 MTSIEILDDELFLGAENSYNLFICQKDSAATSDEDRTHLQEVGTVHL 1216
             M+++EILDD+ FLGAEN++NLF+CQKDSAAT+DE+R HLQEVG  HL
Sbjct:   954 MSAVEILDDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFHL 1000

 Score = 224 (83.9 bits), Expect = 6.2e-112, Sum P(2) = 6.2e-112
 Identities = 46/68 (67%), Positives = 53/68 (77%)

Query:     1 EGSLRIIRNGIGIEEHACIDLPGIKGIWALSIGSPKNLDNTLVLSFVGHTRVLTLSGAEW 60
             EGSLRIIRNGIGI EHA IDLPGIKG+W L + + ++ D+TLVLSFVG TRVLTL+G E 
Sbjct:   384 EGSLRIIRNGIGIHEHASIDLPGIKGLWPLRVAADRDTDDTLVLSFVGQTRVLTLTGEEV 443

Query:    61 GFHLLRGF 68
                 L GF
Sbjct:   444 EETDLAGF 451

 Score = 217 (81.4 bits), Expect = 3.4e-111, Sum P(2) = 3.4e-111
 Identities = 43/81 (53%), Positives = 59/81 (72%)

Query:   625 NFTSSTDLNLVVAKNNRIEIHTVTPEGLRPVKEIFLYGKIAVMKFFRGPTDKKDLLFIIT 684
             +FTS  DLNL++AKN R+EI+ VTPEGLRPVKE+ +YGKIAVM+ FR   + KDLLFI+T
Sbjct:    22 HFTSEDDLNLLIAKNTRLEIYVVTPEGLRPVKEVGMYGKIAVMELFRPKGESKDLLFILT 81

Query:   685 QRTDLNLVVAKNNRIEIHTVT 705
              + +  ++  K +   I  +T
Sbjct:    82 AKYNACILEYKQSGDSIDIIT 102

 Score = 48 (22.0 bits), Expect = 7.1e-13, Sum P(2) = 7.1e-13
 Identities = 32/104 (30%), Positives = 45/104 (43%)

Query:  1028 YALSLISSKFGEDP-NTYFVLGTAVVHPEENEPKQGRIII----FHYDDG-KLQQIAEKE 1081
             Y +SL   +F + P     V   A +     EP  G III      Y +G K   IA   
Sbjct:   193 YEVSLREKEFSKGPWKQENVEAEASMVIAVPEPFGGAIIIGQESITYHNGDKYLAIAPPI 252

Query:  1082 IKGA---CYSMCEFNGK--LLASINSTVRLFEWTNEKELRLECS 1120
             IK +   C++  + NG   LL  +    RLF    EKE +++ S
Sbjct:   253 IKQSTIVCHNRVDVNGSRYLLGDMEG--RLFMLLLEKEEQMDGS 294

 Score = 43 (20.2 bits), Expect = 7.9e-93, Sum P(2) = 7.9e-93
 Identities = 11/26 (42%), Positives = 13/26 (50%)

Query:   396 EPLGGEIIPRSILMTCFEGHCYLLVA 421
             EP GG II     +T   G  YL +A
Sbjct:   224 EPFGGAIIIGQESITYHNGDKYLAIA 249


>ZFIN|ZDB-GENE-040426-1272 [details] [associations]
            symbol:ddb1 "damage specific DNA binding protein
            1" species:7955 "Danio rerio" [GO:0005634 "nucleus" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR004871
            InterPro:IPR015943 Pfam:PF03178 ZFIN:ZDB-GENE-040426-1272
            GO:GO:0005634 Gene3D:2.130.10.10 GO:GO:0003676 EMBL:JQ692623
            UniGene:Dr.77970 Uniprot:I1XUS8
        Length = 1140

 Score = 1689 (599.6 bits), Expect = 3.9e-267, Sum P(2) = 3.9e-267
 Identities = 343/549 (62%), Positives = 411/549 (74%)

Query:    76 NGWSERYLLGDLAGRLFXXXXXXXXXXDGTFSVKEPKVELLGEISIPECLTYLDNGVVFV 135
             NG   RYLLGD+ GRLF          DG   +K+  VELLGE SI ECLTYLDNGVVFV
Sbjct:   267 NG--SRYLLGDMEGRLFMLLLEKEELMDGAVVLKDLHVELLGETSIAECLTYLDNGVVFV 324

Query:   136 GSRLGDSQLVKLNRSPDENGTYVSVMESFTNLAPIIDMVVVDLERQGQGQLVTCSGGFKE 195
             GSRLGDSQLVKLN   ++ G+YV VME+FTNL PI+DM VVDLERQGQGQLVTCSG FKE
Sbjct:   325 GSRLGDSQLVKLNVDSNDQGSYVGVMETFTNLGPIVDMCVVDLERQGQGQLVTCSGAFKE 384

Query:   196 GSLRIIRNGIGIEEHACIDLPGIKGIWALSIGSPKNLDNTLVLSFVGHTRVLTLSGAEVE 255
             GSLRIIRNGIGI EHA IDLPGIKG+W L   S ++ D+ LVLSFVG TRVL LSG EVE
Sbjct:   385 GSLRIIRNGIGIHEHASIDLPGIKGLWPLRSESSRDTDDMLVLSFVGQTRVLMLSGEEVE 444

Query:   256 ETEMGGFTSDQQTFYCGNVDPRTVLQVTPSAAILISTESKARVSSWEPPNGKSISVVSCN 315
             ETE+ GF  +QQTF+CGNV  + ++Q+T  +  L++ +SKA VS W+ P G++ISV SCN
Sbjct:   445 ETELQGFVDNQQTFFCGNVAHQQLIQITSVSVRLVTQDSKALVSEWKEPQGRNISVASCN 504

Query:   316 KNQVLCATGCDVYYLEVHGSEIKQLAHRALEYEVACLDISPLSNEETSSEPAKAQLAAVG 375
               QV+ A G  +YYL++   E+KQ++   +E+EVACLDI+PL  E T    A + + AVG
Sbjct:   505 NTQVVLAVGRVLYYLQILSGELKQISSTEMEHEVACLDITPLG-ERT----ADSCICAVG 559

Query:   376 LWTDISARLLSLPSLEEVCKEPLGGEIIPRSILMTCFEGHCYLLVALGDGSMFYFSLDPA 435
             LWTDISARLL LP    + KE LGGEIIPRSILMT FEG  YLL ALGDG++FYF LD  
Sbjct:   560 LWTDISARLLKLPCFTPLHKEMLGGEIIPRSILMTTFEGSHYLLCALGDGALFYFGLDIQ 619

Query:   436 SGRLTDKKKVTLGTQPTVLKTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLRQVNHM 495
             +G L+++KKVTLGTQPTVL+TFRSLST+NVFACSDRPTVIYSSNHKLVFSNVNL++VN+M
Sbjct:   620 TGVLSERKKVTLGTQPTVLRTFRSLSTSNVFACSDRPTVIYSSNHKLVFSNVNLKEVNYM 679

Query:   496 CSLNAESYPDSLALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTR 555
             C LN+E YPDSLALA +ST T GTIDEIQKLHIRTVPL E+P+RI YQE SQ FGV+++R
Sbjct:   680 CPLNSEGYPDSLALANNSTLTIGTIDEIQKLHIRTVPLYESPKRICYQEVSQCFGVLSSR 739

Query:   556 IDIQEADGSTP-VRPXXXXXXXXXXXXXXXXXXYIKPGSTKQSTANQPADFNMEVEVHNL 614
             +++Q+A G+T  VRP                   + P ST     +    F  EVEVH+L
Sbjct:   740 VEMQDASGTTAAVRPSASTQALSSSVSSSK----LFPSSTSPHETS----FGEEVEVHSL 791

Query:   615 LIIDQNTFE 623
             L++DQ+TFE
Sbjct:   792 LVVDQHTFE 800

 Score = 964 (344.4 bits), Expect = 1.9e-190, Sum P(2) = 1.9e-190
 Identities = 182/284 (64%), Positives = 226/284 (79%)

Query:   684 TQRTDLNLVVAKNNRIEIHTVTPEGLRPVKEIFLYGKIAVMKFFRGPTDKKDLLFIITQR 743
             T   DLNL++AKN R+EI+ VT EGLRPVKE+ +YGKIAVM+ FR   + KDLLFI+T +
Sbjct:    24 TSAEDLNLLIAKNTRLEIYAVTAEGLRPVKEVGMYGKIAVMELFRPKGESKDLLFILTAK 83

Query:   744 YNAMILECRGDIDNLEILTKAHGNVSDRIGKPSENGIIAIIDPEARVIGLRLYNGLFKII 803
             YNA ILE +   D+++I+T+AHGNV DRIG+PSE GII I+DPE R+IGLRLY+GLFK+I
Sbjct:    84 YNACILEYKQSGDSIDIITRAHGNVQDRIGRPSETGIIGIVDPECRMIGLRLYDGLFKVI 143

Query:   804 PLEKDNFELKASSIRMEELEIQDVQFLHGCQNPTIICIHQDVNGRHVKTHEISLKEKEFT 863
             PL+++N ELKA +IR+EEL++ DVQFL+GCQ PT+  I+QD  GRHVKT+E+SL+EKEF 
Sbjct:   144 PLDRENRELKAFNIRLEELQVIDVQFLYGCQAPTVCFIYQDPQGRHVKTYEVSLREKEFN 203

Query:   864 KTPWKQDNIEMEASLVIPVPEPLGGAIIIGQESILYHSGKSYVAVAPQIIKSSTIVCYAK 923
             K PWKQ+N+E EAS+VIPVPEP GGAIIIGQESI YH+G  Y+AVAP IIK STIVC+ +
Sbjct:   204 KGPWKQENVEAEASMVIPVPEPFGGAIIIGQESITYHNGDKYLAVAPPIIKQSTIVCHNR 263

Query:   924 VDANGERYLLGDLAGRLFXXXXXXXXXXDGTFSVKEPKVELLGE 967
             VD NG RYLLGD+ GRLF          DG   +K+  VELLGE
Sbjct:   264 VDPNGSRYLLGDMEGRLFMLLLEKEELMDGAVVLKDLHVELLGE 307

 Score = 904 (323.3 bits), Expect = 3.9e-267, Sum P(2) = 3.9e-267
 Identities = 164/227 (72%), Positives = 196/227 (86%)

Query:   990 STANQPADFNMEVEVHNLLIIDQNTFEILHAHQLFPGEYALSLISSKFGEDPNTYFVLGT 1049
             ST+     F  EVEVH+LL++DQ+TFE+LHAHQ    EYALS++S K G DP  YF++GT
Sbjct:   774 STSPHETSFGEEVEVHSLLVVDQHTFEVLHAHQFLQNEYALSMVSCKLGRDPAVYFIVGT 833

Query:  1050 AVVHPEENEPKQGRIIIFHYDDGKLQQIAEKEIKGACYSMCEFNGKLLASINSTVRLFEW 1109
             A+V+PEE EPKQGRII+FHY DGKLQ +AEKE+KGA YSM EFNGKLLASINSTVRL+EW
Sbjct:   834 AMVYPEEAEPKQGRIIVFHYTDGKLQTVAEKEVKGAVYSMVEFNGKLLASINSTVRLYEW 893

Query:  1110 TNEKELRLECSHFNNIIALFLKVKGDFILVGDLMRSLTLLQYKTMEGSFEEISRDYNPNW 1169
             T EKELR EC+H+NNI+AL+LK KGDFILVGDLMRS+ LL YK MEGSFEEI+RD+NPNW
Sbjct:   894 TAEKELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGSFEEIARDFNPNW 953

Query:  1170 MTSIEILDDELFLGAENSYNLFICQKDSAATSDEDRTHLQEVGTVHL 1216
             M+++EILDD+ FLGAEN++NLF+CQKDSAAT+DE+R HLQEVG  HL
Sbjct:   954 MSAVEILDDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFHL 1000

 Score = 214 (80.4 bits), Expect = 3.4e-111, Sum P(2) = 3.4e-111
 Identities = 46/68 (67%), Positives = 51/68 (75%)

Query:     1 EGSLRIIRNGIGIEEHACIDLPGIKGIWALSIGSPKNLDNTLVLSFVGHTRVLTLSGAEW 60
             EGSLRIIRNGIGI EHA IDLPGIKG+W L   S ++ D+ LVLSFVG TRVL LSG E 
Sbjct:   384 EGSLRIIRNGIGIHEHASIDLPGIKGLWPLRSESSRDTDDMLVLSFVGQTRVLMLSGEEV 443

Query:    61 GFHLLRGF 68
                 L+GF
Sbjct:   444 EETELQGF 451

 Score = 210 (79.0 bits), Expect = 9.0e-111, Sum P(2) = 9.0e-111
 Identities = 42/81 (51%), Positives = 59/81 (72%)

Query:   625 NFTSSTDLNLVVAKNNRIEIHTVTPEGLRPVKEIFLYGKIAVMKFFRGPTDKKDLLFIIT 684
             +FTS+ DLNL++AKN R+EI+ VT EGLRPVKE+ +YGKIAVM+ FR   + KDLLFI+T
Sbjct:    22 HFTSAEDLNLLIAKNTRLEIYAVTAEGLRPVKEVGMYGKIAVMELFRPKGESKDLLFILT 81

Query:   685 QRTDLNLVVAKNNRIEIHTVT 705
              + +  ++  K +   I  +T
Sbjct:    82 AKYNACILEYKQSGDSIDIIT 102

 Score = 44 (20.5 bits), Expect = 3.0e-93, Sum P(2) = 3.0e-93
 Identities = 12/26 (46%), Positives = 13/26 (50%)

Query:   396 EPLGGEIIPRSILMTCFEGHCYLLVA 421
             EP GG II     +T   G  YL VA
Sbjct:   224 EPFGGAIIIGQESITYHNGDKYLAVA 249

 Score = 37 (18.1 bits), Expect = 2.0e-11, Sum P(2) = 2.0e-11
 Identities = 16/78 (20%), Positives = 28/78 (35%)

Query:   761 LTKAHGNVSDRIGKPSENGIIAIIDPEARVIGLRLYNGLFKIIPLEKDNFELK-ASSIRM 819
             +++  G +S R+     +G  A + P A    L       K+ P      E      + +
Sbjct:   729 VSQCFGVLSSRVEMQDASGTTAAVRPSASTQALSSSVSSSKLFPSSTSPHETSFGEEVEV 788

Query:   820 EELEIQD---VQFLHGCQ 834
               L + D    + LH  Q
Sbjct:   789 HSLLVVDQHTFEVLHAHQ 806


>FB|FBgn0260962 [details] [associations]
            symbol:pic "piccolo" species:7227 "Drosophila melanogaster"
            [GO:0003684 "damaged DNA binding" evidence=ISS] [GO:0006289
            "nucleotide-excision repair" evidence=ISS;NAS] [GO:0005634
            "nucleus" evidence=IEA] [GO:0006974 "response to DNA damage
            stimulus" evidence=IMP] [GO:0035220 "wing disc development"
            evidence=IMP] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0042787 "protein ubiquitination involved in ubiquitin-dependent
            protein catabolic process" evidence=ISS] [GO:0007307 "eggshell
            chorion gene amplification" evidence=IDA] [GO:0007095 "mitotic G2
            DNA damage checkpoint" evidence=IGI] InterPro:IPR004871
            Pfam:PF03178 UniPathway:UPA00143 EMBL:AE014297 GO:GO:0005634
            GO:GO:0005737 GO:GO:0007095 GO:GO:0043161 GO:GO:0003677
            GO:GO:0006281 GO:GO:0035220 GO:GO:0042787 GO:GO:0007307
            eggNOG:NOG247734 KO:K10610 OMA:CALGDGS GeneTree:ENSGT00530000063396
            HSSP:Q16531 EMBL:AF132145 RefSeq:NP_650257.1 UniGene:Dm.3215
            ProteinModelPortal:Q9XYZ5 SMR:Q9XYZ5 STRING:Q9XYZ5 PaxDb:Q9XYZ5
            PRIDE:Q9XYZ5 EnsemblMetazoa:FBtr0082709 GeneID:41611
            KEGG:dme:Dmel_CG7769 UCSC:CG7769-RA CTD:41611 FlyBase:FBgn0260962
            InParanoid:Q9XYZ5 OrthoDB:EOG4S1RP0 PhylomeDB:Q9XYZ5
            GenomeRNAi:41611 NextBio:824642 Bgee:Q9XYZ5 Uniprot:Q9XYZ5
        Length = 1140

 Score = 1683 (597.5 bits), Expect = 9.6e-253, Sum P(2) = 9.6e-253
 Identities = 334/544 (61%), Positives = 408/544 (75%)

Query:    81 RYLLGDLAGRLFXXXXXXXXXXDGTFSVKEPKVELLGEISIPECLTYLDNGVVFVGSRLG 140
             RYLLG++ G+L+           G  +VK+ KVE LGEISIPEC+TYLDNG +++G+R G
Sbjct:   270 RYLLGNMDGQLYMLFLGTAETSKGV-TVKDIKVEQLGEISIPECITYLDNGFLYIGARHG 328

Query:   141 DSQLVKLNRSPDENGTYVSVMESFTNLAPIIDMVVVDLERQGQGQLVTCSGGFKEGSLRI 200
             DSQLV+LN S   +G+YV  +E+FTNLAPI+D+ VVDL+RQGQGQ++TCSG FK+GSLRI
Sbjct:   329 DSQLVRLN-SEAIDGSYVVPVENFTNLAPILDIAVVDLDRQGQGQIITCSGSFKDGSLRI 387

Query:   201 IRNGIGIEEHACIDLPGIKGIWALSIGSPKN-LDNTLVLSFVGHTRVLTLSGAEVEETEM 259
             IR GIGI+EHACIDLPGIKG+W+L +G  ++  +NTLVL+FVGHTR+LTLSG EVEETE+
Sbjct:   388 IRIGIGIQEHACIDLPGIKGMWSLKVGVDESPYENTLVLAFVGHTRILTLSGEEVEETEI 447

Query:   260 GGFTSDQQTFYCGNVDPRTVLQVTPSAAILISTESKARVSSWEPPNGKSISVVSCNKNQV 319
              GF SD QTF C NVD   ++QVT  +  L+S+ +KA V+ W P   ++I VVSCN  Q+
Sbjct:   448 PGFASDLQTFLCSNVDYDQLIQVTSDSVRLVSSATKALVAEWRPTGDRTIGVVSCNTTQI 507

Query:   320 LCATGCDVYYLEVHGSEIKQLAHRALEYEVACLDISPLSNEETSSEPAKAQLAAVGLWTD 379
             L A+ CD++Y+ +    +++ + R L YEVACLDI+PL  +ET     K+ L AVGLWTD
Sbjct:   508 LVASACDIFYIVIEDGSLREQSRRTLAYEVACLDITPL--DETQK---KSDLVAVGLWTD 562

Query:   380 ISARLLSLPSLEEVCKEPLGGEIIPRSILMTCFEGHCYLLVALGDGSMFYFSLDPASGRL 439
             ISA +LSLP LE +  E L GEIIPRSILMT FEG  YLL ALGDGSM+YF +D  +G+L
Sbjct:   563 ISAVILSLPDLETIYTEKLSGEIIPRSILMTTFEGIHYLLCALGDGSMYYFIMDQTTGQL 622

Query:   440 TDKKKVTLGTQPTVLKTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLRQVNHMCSLN 499
             TDKKKVTLGTQPT L+TFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNL++VNHMCSLN
Sbjct:   623 TDKKKVTLGTQPTTLRTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLKEVNHMCSLN 682

Query:   500 AESYPDSLALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQ 559
             A++YPDSLALA  +    GTIDEIQKLHIRTVPLGE PRRIAYQESSQTF V T RID+ 
Sbjct:   683 AQAYPDSLALANKNAVILGTIDEIQKLHIRTVPLGEGPRRIAYQESSQTFAVSTLRIDVH 742

Query:   560 EADGSTPVRPXXXXXXXXXXXXXXXXXXYIKPGSTKQSTANQPADFNMEVEVHNLLIIDQ 619
                G+ P+R                     KPG    + AN  A+   E++VHNLL+IDQ
Sbjct:   743 GRGGAKPLRNSASTQAQNITCSSNFLP---KPGGGNSTAAN--AEVGQEIDVHNLLVIDQ 797

Query:   620 NTFE 623
             NTFE
Sbjct:   798 NTFE 801

 Score = 891 (318.7 bits), Expect = 5.5e-169, Sum P(2) = 5.5e-169
 Identities = 168/284 (59%), Positives = 219/284 (77%)

Query:   684 TQRTDLNLVVAKNNRIEIHTVTPEGLRPVKEIFLYGKIAVMKFFRGPTDKKDLLFIITQR 743
             T  TDLNL++A+NN++EI  VTPEGLRP+KEI + G IAVM+ FR P   KDLLFI+T+R
Sbjct:    24 TSPTDLNLIIARNNQVEIDLVTPEGLRPLKEININGTIAVMRHFRPPDSNKDLLFILTRR 83

Query:   744 YNAMILECRGDIDNLEILTKAHGNVSDRIGKPSENGIIAIIDPEARVIGLRLYNGLFKII 803
             YN MILE R   D + ++TKA+GNVSD +G PSE G+IA IDP+ARVIG+ LY GLF II
Sbjct:    84 YNVMILEARMVNDVITVVTKANGNVSDSVGIPSEGGVIAAIDPKARVIGMCLYQGLFTII 143

Query:   804 PLEKDNFELKASSIRMEELEIQDVQFLHGCQNPTIICIHQDVNGRHVKTHEISLKEKEFT 863
             P++KD  ELKA+++RM+EL + DV+FLHGC NPT+I IH+D +GRHVK+HEI+L++KEF 
Sbjct:   144 PMDKDASELKATNLRMDELNVYDVEFLHGCLNPTVIVIHKDSDGRHVKSHEINLRDKEFM 203

Query:   864 KTPWKQDNIEMEASLVIPVPEPLGGAIIIGQESILYHSGKSYVAVAPQIIKSSTIVCYAK 923
             K  WKQDN+E EA+++IPVP P+GG I+IG+ESI+YH G +Y AVAP   + STI CYA+
Sbjct:   204 KIAWKQDNVETEATMLIPVPSPIGGVIVIGRESIVYHDGSNYHAVAPLTFRQSTINCYAR 263

Query:   924 VDANGERYLLGDLAGRLFXXXXXXXXXXDGTFSVKEPKVELLGE 967
             V +NG RYLLG++ G+L+           G  +VK+ KVE LGE
Sbjct:   264 VSSNGLRYLLGNMDGQLYMLFLGTAETSKGV-TVKDIKVEQLGE 306

 Score = 774 (277.5 bits), Expect = 9.6e-253, Sum P(2) = 9.6e-253
 Identities = 148/237 (62%), Positives = 183/237 (77%)

Query:   983 KPGSTKQSTANQPADFNMEVEVHNLLIIDQNTFEILHAHQLFPGEYALSLISSKFGEDPN 1042
             KPG    + AN  A+   E++VHNLL+IDQNTFE+LHAHQ    E   SL+S+K G+DPN
Sbjct:   770 KPGGGNSTAAN--AEVGQEIDVHNLLVIDQNTFEVLHAHQFVAPETISSLMSAKLGDDPN 827

Query:  1043 TYFVLGTAVVHPEENEPKQGRIIIFHYDDGKLQQIAEKEIKGACYSMCEFNGKLLASINS 1102
             TY+V+ T++V PEE EPK GRIIIFHY + KL Q+AE ++ G CY++ EFNGK+LA I S
Sbjct:   828 TYYVVATSLVIPEEPEPKVGRIIIFHYHENKLTQVAETKVDGTCYALVEFNGKVLAGIGS 887

Query:  1103 TVRLFEWTNEKELRLECSHFNNIIALFLKVKGDFILVGDLMRSLTLLQYKTMEGSFEEIS 1162
              VRL+EWTNEKELR+EC+  N I ALFLK KGDFILVGDLMRS+TLLQ+K MEG F EI+
Sbjct:   888 FVRLYEWTNEKELRMECNIQNMIAALFLKAKGDFILVGDLMRSITLLQHKQMEGIFVEIA 947

Query:  1163 RDYNPNWMTSIEILDDELFLGAENSYNLFICQKDSAATSDEDRTHLQEVGTVHLVGD 1219
             RD  P WM ++EILDD+ FLG+E + NLF+CQKDSAAT+DE+R  L E+   HL GD
Sbjct:   948 RDCEPKWMRAVEILDDDTFLGSETNGNLFVCQKDSAATTDEERQLLPELARFHL-GD 1003

 Score = 230 (86.0 bits), Expect = 4.8e-94, Sum P(2) = 4.8e-94
 Identities = 46/71 (64%), Positives = 58/71 (81%)

Query:     1 EGSLRIIRNGIGIEEHACIDLPGIKGIWALSIGSPKN-LDNTLVLSFVGHTRVLTLSGAE 59
             +GSLRIIR GIGI+EHACIDLPGIKG+W+L +G  ++  +NTLVL+FVGHTR+LTLSG E
Sbjct:   382 DGSLRIIRIGIGIQEHACIDLPGIKGMWSLKVGVDESPYENTLVLAFVGHTRILTLSGEE 441

Query:    60 WGFHLLRGFSS 70
                  + GF+S
Sbjct:   442 VEETEIPGFAS 452

 Score = 221 (82.9 bits), Expect = 4.3e-93, Sum P(2) = 4.3e-93
 Identities = 45/81 (55%), Positives = 62/81 (76%)

Query:   625 NFTSSTDLNLVVAKNNRIEIHTVTPEGLRPVKEIFLYGKIAVMKFFRGPTDKKDLLFIIT 684
             NFTS TDLNL++A+NN++EI  VTPEGLRP+KEI + G IAVM+ FR P   KDLLFI+T
Sbjct:    22 NFTSPTDLNLIIARNNQVEIDLVTPEGLRPLKEININGTIAVMRHFRPPDSNKDLLFILT 81

Query:   685 QRTDLNLVVAK--NNRIEIHT 703
             +R ++ ++ A+  N+ I + T
Sbjct:    82 RRYNVMILEARMVNDVITVVT 102

 Score = 62 (26.9 bits), Expect = 1.9e-177, Sum P(2) = 1.9e-177
 Identities = 23/54 (42%), Positives = 27/54 (50%)

Query:   877 SLVIPV-PEPLGGAIIIGQESILYHSGKSYVAVAPQIIKSSTIVCYAKVDANGE 929
             SLVIP  PEP  G III      YH  K    VA   +  +   CYA V+ NG+
Sbjct:   835 SLVIPEEPEPKVGRIIIFH----YHENK-LTQVAETKVDGT---CYALVEFNGK 880


>UNIPROTKB|F1NVV2 [details] [associations]
            symbol:DDB1 "DNA damage-binding protein 1" species:9031
            "Gallus gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0000075 "cell cycle
            checkpoint" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
            [GO:0016055 "Wnt receptor signaling pathway" evidence=IEA]
            [GO:0031464 "Cul4A-RING ubiquitin ligase complex" evidence=IEA]
            [GO:0031465 "Cul4B-RING ubiquitin ligase complex" evidence=IEA]
            [GO:0042787 "protein ubiquitination involved in ubiquitin-dependent
            protein catabolic process" evidence=IEA] [GO:0043161 "proteasomal
            ubiquitin-dependent protein catabolic process" evidence=IEA]
            InterPro:IPR004871 InterPro:IPR015943 Pfam:PF03178 GO:GO:0005634
            GO:GO:0005737 GO:GO:0043161 GO:GO:0016055 Gene3D:2.130.10.10
            GO:GO:0003676 GO:GO:0042787 GO:GO:0000075 GO:GO:0031464
            GO:GO:0031465 OMA:CALGDGS GeneTree:ENSGT00530000063396
            IPI:IPI00597295 EMBL:AADN02017118 EMBL:AADN02017119
            Ensembl:ENSGALT00000040605 ArrayExpress:F1NVV2 Uniprot:F1NVV2
        Length = 1123

 Score = 1731 (614.4 bits), Expect = 2.7e-178, P = 2.7e-178
 Identities = 373/650 (57%), Positives = 450/650 (69%)

Query:    76 NGWSERYLLGDLAGRLFXXXXXXXXXXDGTFSVKEPKVELLGEISIPECLTYLDNGVVFV 135
             NG   RYLLGD+ GRLF          DGT ++K+ +VELLGE SI ECLTYLDNGVVFV
Sbjct:   247 NG--SRYLLGDMEGRLFMLLLEKEEQMDGTVTLKDLRVELLGETSIAECLTYLDNGVVFV 304

Query:   136 GSRLGDSQLVKLNRSPDENGTYVSVMESFTNLAPIIDMVVVDLERQGQGQLVTCSGGFKE 195
             GSRLGDSQLVKLN   +E G+YV  ME+FTNL PI+DM VVDLERQGQGQLVTCSG FKE
Sbjct:   305 GSRLGDSQLVKLNVDSNEQGSYVVAMETFTNLGPIVDMCVVDLERQGQGQLVTCSGAFKE 364

Query:   196 GSLRIIRNGIGIEEHACIDLPGIKGIWALSIGSPKNLDNTLVLSFVGHTRVLTLSGAEVE 255
             GSLRIIRNGIGI EHA IDLPGIKG+W L   S + +DN LVLSFVG TRVL L+G EVE
Sbjct:   365 GSLRIIRNGIGIHEHASIDLPGIKGLWPLRSDSHREMDNMLVLSFVGQTRVLMLNGEEVE 424

Query:   256 ETEMGGFTSDQQTFYCGNVDPRTVLQVTPSAAILISTESKARVSSWEPPNGKSISVVSCN 315
             ETE+ GF  DQQTF+CGNV  + ++Q+T ++  L+S E KA VS W+ PNGK+ISV SCN
Sbjct:   425 ETELTGFVDDQQTFFCGNVAHQQLIQITSASVRLVSQEPKALVSEWKEPNGKNISVASCN 484

Query:   316 KNQVLCATGCDVYYLEVHGSEIKQLAHRALEYEVACLDISPLSNEETSSEPAKAQLAAVG 375
              NQV+ A G  +YYLE+   E++Q+    +E+EVACLDI+PL +    S P    L A+G
Sbjct:   485 SNQVVVAVGRALYYLEIRPQELRQINCTEMEHEVACLDITPLGDTNGMS-P----LCAIG 539

Query:   376 LWTDISARLLSLPSLEEVCKEPLGGEIIPRSILMTCFEGHCYLLVALGDGSMFYFSLDPA 435
             LWTDISAR+L LPS E + KE LGGEIIPRSILMT FE   YLL ALGDG++FYF L   
Sbjct:   540 LWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLSLE 599

Query:   436 SGRLTDKKKVTLGTQPTVLKTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLRQVNHM 495
             +G L+D+KKVTLGTQPTVL+TFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNL++VN+M
Sbjct:   600 TGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLKEVNYM 659

Query:   496 CSLNAESYPDSLALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTR 555
             C LN++ YPDSLALA +ST T GTIDEIQKLHIRTVPL E+PR+I YQE SQ FGV+++R
Sbjct:   660 CPLNSDGYPDSLALANNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSR 719

Query:   556 IDIQEADG-STPVRPXXXXXXXXXXXXXXXXXXYIKPGSTKQSTANQPADFNMEVEVHNL 614
             I++Q+A G +T +RP                           STA     F  EVEVHNL
Sbjct:   720 IEVQDASGGTTALRPSASTQALSSSVSTSKLFS--------SSTAPHETSFGEEVEVHNL 771

Query:   615 LIIDQNTFE----RNFTSST-DLNLVVAK-----NNRIEIHT--VTPEGLRPVKEIFLYG 662
             LIIDQ+TFE      F  +   L+LV  K     N    + T  V PE   P K+    G
Sbjct:   772 LIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEP-KQ----G 826

Query:   663 KIAVMKFFRGPTD---KKDLLFIITQRTDLN--LVVAKNNRIEIHTVTPE 707
             +I V  +  G      +K++   +    + N  L+ + N+ + ++  T E
Sbjct:   827 RIVVFHYSDGKLQSLAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTAE 876

 Score = 964 (344.4 bits), Expect = 5.5e-193, Sum P(2) = 5.5e-193
 Identities = 181/284 (63%), Positives = 228/284 (80%)

Query:   684 TQRTDLNLVVAKNNRIEIHTVTPEGLRPVKEIFLYGKIAVMKFFRGPTDKKDLLFIITQR 743
             T   DLNL++AKN R+EI+ VT EGLRPVKE+ +YGK AVM+ FR   + KDLLFI+T +
Sbjct:     4 TSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGKTAVMELFRPKGESKDLLFILTAK 63

Query:   744 YNAMILECRGDIDNLEILTKAHGNVSDRIGKPSENGIIAIIDPEARVIGLRLYNGLFKII 803
             YNA ILE + + DN++I+T+AHGNV DRIG+PSE GII IIDPE R+IGLRLY+GLFK+I
Sbjct:    64 YNACILEYKQNGDNIDIITRAHGNVQDRIGRPSETGIIGIIDPECRMIGLRLYDGLFKVI 123

Query:   804 PLEKDNFELKASSIRMEELEIQDVQFLHGCQNPTIICIHQDVNGRHVKTHEISLKEKEFT 863
             PL+++N ELKA +IR+EEL++ DV+FL+GCQ PTI  ++QD  GRHVKT+E+SL+EKEF 
Sbjct:   124 PLDRENKELKAFNIRLEELQVIDVKFLYGCQAPTICFVYQDPQGRHVKTYEVSLREKEFN 183

Query:   864 KTPWKQDNIEMEASLVIPVPEPLGGAIIIGQESILYHSGKSYVAVAPQIIKSSTIVCYAK 923
             K PWKQ+N+E EAS+VI VPEP GGAIIIGQESI YH+G  Y+A+AP IIK STIVC+ +
Sbjct:   184 KGPWKQENVEAEASMVIAVPEPFGGAIIIGQESITYHNGDKYLAIAPPIIKQSTIVCHNR 243

Query:   924 VDANGERYLLGDLAGRLFXXXXXXXXXXDGTFSVKEPKVELLGE 967
             VD NG RYLLGD+ GRLF          DGT ++K+ +VELLGE
Sbjct:   244 VDPNGSRYLLGDMEGRLFMLLLEKEEQMDGTVTLKDLRVELLGE 287

 Score = 928 (331.7 bits), Expect = 5.5e-193, Sum P(2) = 5.5e-193
 Identities = 174/240 (72%), Positives = 206/240 (85%)

Query:   977 SSLSYIKPGSTKQSTANQPADFNMEVEVHNLLIIDQNTFEILHAHQLFPGEYALSLISSK 1036
             SS+S  K  S+  STA     F  EVEVHNLLIIDQ+TFE+LHAHQ    EYALSL+S K
Sbjct:   743 SSVSTSKLFSS--STAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCK 800

Query:  1037 FGEDPNTYFVLGTAVVHPEENEPKQGRIIIFHYDDGKLQQIAEKEIKGACYSMCEFNGKL 1096
              G+DPNTYF++GTA+V+PEE EPKQGRI++FHY DGKLQ +AEKE+KGA YSM EFNGKL
Sbjct:   801 LGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFHYSDGKLQSLAEKEVKGAVYSMVEFNGKL 860

Query:  1097 LASINSTVRLFEWTNEKELRLECSHFNNIIALFLKVKGDFILVGDLMRSLTLLQYKTMEG 1156
             LASINSTVRL+EWT EKELR EC+H+NNI+AL+LK KGDFILVGDLMRS+ LL YK MEG
Sbjct:   861 LASINSTVRLYEWTAEKELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEG 920

Query:  1157 SFEEISRDYNPNWMTSIEILDDELFLGAENSYNLFICQKDSAATSDEDRTHLQEVGTVHL 1216
             +FEEI+RD+NPNWM+++EILDD+ FLGAEN++NLF+CQKDSAAT+DE+R HLQEVG  HL
Sbjct:   921 NFEEIARDFNPNWMSAVEILDDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLSHL 980

 Score = 216 (81.1 bits), Expect = 6.1e-114, Sum P(2) = 6.1e-114
 Identities = 46/68 (67%), Positives = 50/68 (73%)

Query:     1 EGSLRIIRNGIGIEEHACIDLPGIKGIWALSIGSPKNLDNTLVLSFVGHTRVLTLSGAEW 60
             EGSLRIIRNGIGI EHA IDLPGIKG+W L   S + +DN LVLSFVG TRVL L+G E 
Sbjct:   364 EGSLRIIRNGIGIHEHASIDLPGIKGLWPLRSDSHREMDNMLVLSFVGQTRVLMLNGEEV 423

Query:    61 GFHLLRGF 68
                 L GF
Sbjct:   424 EETELTGF 431

 Score = 210 (79.0 bits), Expect = 2.6e-113, Sum P(2) = 2.6e-113
 Identities = 42/81 (51%), Positives = 58/81 (71%)

Query:   625 NFTSSTDLNLVVAKNNRIEIHTVTPEGLRPVKEIFLYGKIAVMKFFRGPTDKKDLLFIIT 684
             +FTS+ DLNL++AKN R+EI+ VT EGLRPVKE+ +YGK AVM+ FR   + KDLLFI+T
Sbjct:     2 HFTSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGKTAVMELFRPKGESKDLLFILT 61

Query:   685 QRTDLNLVVAKNNRIEIHTVT 705
              + +  ++  K N   I  +T
Sbjct:    62 AKYNACILEYKQNGDNIDIIT 82

 Score = 43 (20.2 bits), Expect = 1.1e-95, Sum P(2) = 1.1e-95
 Identities = 11/26 (42%), Positives = 13/26 (50%)

Query:   396 EPLGGEIIPRSILMTCFEGHCYLLVA 421
             EP GG II     +T   G  YL +A
Sbjct:   204 EPFGGAIIIGQESITYHNGDKYLAIA 229


>UNIPROTKB|F1NVV3 [details] [associations]
            symbol:DDB1 "DNA damage-binding protein 1" species:9031
            "Gallus gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] InterPro:IPR004871
            InterPro:IPR015943 Pfam:PF03178 GO:GO:0005634 Gene3D:2.130.10.10
            GO:GO:0003676 GeneTree:ENSGT00530000063396 EMBL:AADN02017118
            EMBL:AADN02017119 IPI:IPI00821712 Ensembl:ENSGALT00000040604
            ArrayExpress:F1NVV3 Uniprot:F1NVV3
        Length = 1119

 Score = 1731 (614.4 bits), Expect = 2.7e-178, P = 2.7e-178
 Identities = 373/650 (57%), Positives = 450/650 (69%)

Query:    76 NGWSERYLLGDLAGRLFXXXXXXXXXXDGTFSVKEPKVELLGEISIPECLTYLDNGVVFV 135
             NG   RYLLGD+ GRLF          DGT ++K+ +VELLGE SI ECLTYLDNGVVFV
Sbjct:   247 NG--SRYLLGDMEGRLFMLLLEKEEQMDGTVTLKDLRVELLGETSIAECLTYLDNGVVFV 304

Query:   136 GSRLGDSQLVKLNRSPDENGTYVSVMESFTNLAPIIDMVVVDLERQGQGQLVTCSGGFKE 195
             GSRLGDSQLVKLN   +E G+YV  ME+FTNL PI+DM VVDLERQGQGQLVTCSG FKE
Sbjct:   305 GSRLGDSQLVKLNVDSNEQGSYVVAMETFTNLGPIVDMCVVDLERQGQGQLVTCSGAFKE 364

Query:   196 GSLRIIRNGIGIEEHACIDLPGIKGIWALSIGSPKNLDNTLVLSFVGHTRVLTLSGAEVE 255
             GSLRIIRNGIGI EHA IDLPGIKG+W L   S + +DN LVLSFVG TRVL L+G EVE
Sbjct:   365 GSLRIIRNGIGIHEHASIDLPGIKGLWPLRSDSHREMDNMLVLSFVGQTRVLMLNGEEVE 424

Query:   256 ETEMGGFTSDQQTFYCGNVDPRTVLQVTPSAAILISTESKARVSSWEPPNGKSISVVSCN 315
             ETE+ GF  DQQTF+CGNV  + ++Q+T ++  L+S E KA VS W+ PNGK+ISV SCN
Sbjct:   425 ETELTGFVDDQQTFFCGNVAHQQLIQITSASVRLVSQEPKALVSEWKEPNGKNISVASCN 484

Query:   316 KNQVLCATGCDVYYLEVHGSEIKQLAHRALEYEVACLDISPLSNEETSSEPAKAQLAAVG 375
              NQV+ A G  +YYLE+   E++Q+    +E+EVACLDI+PL +    S P    L A+G
Sbjct:   485 SNQVVVAVGRALYYLEIRPQELRQINCTEMEHEVACLDITPLGDTNGMS-P----LCAIG 539

Query:   376 LWTDISARLLSLPSLEEVCKEPLGGEIIPRSILMTCFEGHCYLLVALGDGSMFYFSLDPA 435
             LWTDISAR+L LPS E + KE LGGEIIPRSILMT FE   YLL ALGDG++FYF L   
Sbjct:   540 LWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLSLE 599

Query:   436 SGRLTDKKKVTLGTQPTVLKTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLRQVNHM 495
             +G L+D+KKVTLGTQPTVL+TFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNL++VN+M
Sbjct:   600 TGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLKEVNYM 659

Query:   496 CSLNAESYPDSLALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTR 555
             C LN++ YPDSLALA +ST T GTIDEIQKLHIRTVPL E+PR+I YQE SQ FGV+++R
Sbjct:   660 CPLNSDGYPDSLALANNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSR 719

Query:   556 IDIQEADG-STPVRPXXXXXXXXXXXXXXXXXXYIKPGSTKQSTANQPADFNMEVEVHNL 614
             I++Q+A G +T +RP                           STA     F  EVEVHNL
Sbjct:   720 IEVQDASGGTTALRPSASTQALSSSVSTSKLFS--------SSTAPHETSFGEEVEVHNL 771

Query:   615 LIIDQNTFE----RNFTSST-DLNLVVAK-----NNRIEIHT--VTPEGLRPVKEIFLYG 662
             LIIDQ+TFE      F  +   L+LV  K     N    + T  V PE   P K+    G
Sbjct:   772 LIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEP-KQ----G 826

Query:   663 KIAVMKFFRGPTD---KKDLLFIITQRTDLN--LVVAKNNRIEIHTVTPE 707
             +I V  +  G      +K++   +    + N  L+ + N+ + ++  T E
Sbjct:   827 RIVVFHYSDGKLQSLAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTAE 876

 Score = 964 (344.4 bits), Expect = 5.5e-193, Sum P(2) = 5.5e-193
 Identities = 181/284 (63%), Positives = 228/284 (80%)

Query:   684 TQRTDLNLVVAKNNRIEIHTVTPEGLRPVKEIFLYGKIAVMKFFRGPTDKKDLLFIITQR 743
             T   DLNL++AKN R+EI+ VT EGLRPVKE+ +YGK AVM+ FR   + KDLLFI+T +
Sbjct:     4 TSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGKTAVMELFRPKGESKDLLFILTAK 63

Query:   744 YNAMILECRGDIDNLEILTKAHGNVSDRIGKPSENGIIAIIDPEARVIGLRLYNGLFKII 803
             YNA ILE + + DN++I+T+AHGNV DRIG+PSE GII IIDPE R+IGLRLY+GLFK+I
Sbjct:    64 YNACILEYKQNGDNIDIITRAHGNVQDRIGRPSETGIIGIIDPECRMIGLRLYDGLFKVI 123

Query:   804 PLEKDNFELKASSIRMEELEIQDVQFLHGCQNPTIICIHQDVNGRHVKTHEISLKEKEFT 863
             PL+++N ELKA +IR+EEL++ DV+FL+GCQ PTI  ++QD  GRHVKT+E+SL+EKEF 
Sbjct:   124 PLDRENKELKAFNIRLEELQVIDVKFLYGCQAPTICFVYQDPQGRHVKTYEVSLREKEFN 183

Query:   864 KTPWKQDNIEMEASLVIPVPEPLGGAIIIGQESILYHSGKSYVAVAPQIIKSSTIVCYAK 923
             K PWKQ+N+E EAS+VI VPEP GGAIIIGQESI YH+G  Y+A+AP IIK STIVC+ +
Sbjct:   184 KGPWKQENVEAEASMVIAVPEPFGGAIIIGQESITYHNGDKYLAIAPPIIKQSTIVCHNR 243

Query:   924 VDANGERYLLGDLAGRLFXXXXXXXXXXDGTFSVKEPKVELLGE 967
             VD NG RYLLGD+ GRLF          DGT ++K+ +VELLGE
Sbjct:   244 VDPNGSRYLLGDMEGRLFMLLLEKEEQMDGTVTLKDLRVELLGE 287

 Score = 928 (331.7 bits), Expect = 5.5e-193, Sum P(2) = 5.5e-193
 Identities = 174/240 (72%), Positives = 206/240 (85%)

Query:   977 SSLSYIKPGSTKQSTANQPADFNMEVEVHNLLIIDQNTFEILHAHQLFPGEYALSLISSK 1036
             SS+S  K  S+  STA     F  EVEVHNLLIIDQ+TFE+LHAHQ    EYALSL+S K
Sbjct:   743 SSVSTSKLFSS--STAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCK 800

Query:  1037 FGEDPNTYFVLGTAVVHPEENEPKQGRIIIFHYDDGKLQQIAEKEIKGACYSMCEFNGKL 1096
              G+DPNTYF++GTA+V+PEE EPKQGRI++FHY DGKLQ +AEKE+KGA YSM EFNGKL
Sbjct:   801 LGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFHYSDGKLQSLAEKEVKGAVYSMVEFNGKL 860

Query:  1097 LASINSTVRLFEWTNEKELRLECSHFNNIIALFLKVKGDFILVGDLMRSLTLLQYKTMEG 1156
             LASINSTVRL+EWT EKELR EC+H+NNI+AL+LK KGDFILVGDLMRS+ LL YK MEG
Sbjct:   861 LASINSTVRLYEWTAEKELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEG 920

Query:  1157 SFEEISRDYNPNWMTSIEILDDELFLGAENSYNLFICQKDSAATSDEDRTHLQEVGTVHL 1216
             +FEEI+RD+NPNWM+++EILDD+ FLGAEN++NLF+CQKDSAAT+DE+R HLQEVG  HL
Sbjct:   921 NFEEIARDFNPNWMSAVEILDDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLSHL 980

 Score = 216 (81.1 bits), Expect = 6.1e-114, Sum P(2) = 6.1e-114
 Identities = 46/68 (67%), Positives = 50/68 (73%)

Query:     1 EGSLRIIRNGIGIEEHACIDLPGIKGIWALSIGSPKNLDNTLVLSFVGHTRVLTLSGAEW 60
             EGSLRIIRNGIGI EHA IDLPGIKG+W L   S + +DN LVLSFVG TRVL L+G E 
Sbjct:   364 EGSLRIIRNGIGIHEHASIDLPGIKGLWPLRSDSHREMDNMLVLSFVGQTRVLMLNGEEV 423

Query:    61 GFHLLRGF 68
                 L GF
Sbjct:   424 EETELTGF 431

 Score = 210 (79.0 bits), Expect = 2.6e-113, Sum P(2) = 2.6e-113
 Identities = 42/81 (51%), Positives = 58/81 (71%)

Query:   625 NFTSSTDLNLVVAKNNRIEIHTVTPEGLRPVKEIFLYGKIAVMKFFRGPTDKKDLLFIIT 684
             +FTS+ DLNL++AKN R+EI+ VT EGLRPVKE+ +YGK AVM+ FR   + KDLLFI+T
Sbjct:     2 HFTSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGKTAVMELFRPKGESKDLLFILT 61

Query:   685 QRTDLNLVVAKNNRIEIHTVT 705
              + +  ++  K N   I  +T
Sbjct:    62 AKYNACILEYKQNGDNIDIIT 82

 Score = 43 (20.2 bits), Expect = 1.1e-95, Sum P(2) = 1.1e-95
 Identities = 11/26 (42%), Positives = 13/26 (50%)

Query:   396 EPLGGEIIPRSILMTCFEGHCYLLVA 421
             EP GG II     +T   G  YL +A
Sbjct:   204 EPFGGAIIIGQESITYHNGDKYLAIA 229


>UNIPROTKB|F1P4I8 [details] [associations]
            symbol:DDB1 "DNA damage-binding protein 1" species:9031
            "Gallus gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] InterPro:IPR004871
            InterPro:IPR015943 Pfam:PF03178 GO:GO:0005634 Gene3D:2.130.10.10
            GO:GO:0003676 GeneTree:ENSGT00530000063396 EMBL:AADN02017118
            EMBL:AADN02017119 IPI:IPI00818299 Ensembl:ENSGALT00000008352
            ArrayExpress:F1P4I8 Uniprot:F1P4I8
        Length = 1120

 Score = 1731 (614.4 bits), Expect = 2.7e-178, P = 2.7e-178
 Identities = 373/650 (57%), Positives = 450/650 (69%)

Query:    76 NGWSERYLLGDLAGRLFXXXXXXXXXXDGTFSVKEPKVELLGEISIPECLTYLDNGVVFV 135
             NG   RYLLGD+ GRLF          DGT ++K+ +VELLGE SI ECLTYLDNGVVFV
Sbjct:   247 NG--SRYLLGDMEGRLFMLLLEKEEQMDGTVTLKDLRVELLGETSIAECLTYLDNGVVFV 304

Query:   136 GSRLGDSQLVKLNRSPDENGTYVSVMESFTNLAPIIDMVVVDLERQGQGQLVTCSGGFKE 195
             GSRLGDSQLVKLN   +E G+YV  ME+FTNL PI+DM VVDLERQGQGQLVTCSG FKE
Sbjct:   305 GSRLGDSQLVKLNVDSNEQGSYVVAMETFTNLGPIVDMCVVDLERQGQGQLVTCSGAFKE 364

Query:   196 GSLRIIRNGIGIEEHACIDLPGIKGIWALSIGSPKNLDNTLVLSFVGHTRVLTLSGAEVE 255
             GSLRIIRNGIGI EHA IDLPGIKG+W L   S + +DN LVLSFVG TRVL L+G EVE
Sbjct:   365 GSLRIIRNGIGIHEHASIDLPGIKGLWPLRSDSHREMDNMLVLSFVGQTRVLMLNGEEVE 424

Query:   256 ETEMGGFTSDQQTFYCGNVDPRTVLQVTPSAAILISTESKARVSSWEPPNGKSISVVSCN 315
             ETE+ GF  DQQTF+CGNV  + ++Q+T ++  L+S E KA VS W+ PNGK+ISV SCN
Sbjct:   425 ETELTGFVDDQQTFFCGNVAHQQLIQITSASVRLVSQEPKALVSEWKEPNGKNISVASCN 484

Query:   316 KNQVLCATGCDVYYLEVHGSEIKQLAHRALEYEVACLDISPLSNEETSSEPAKAQLAAVG 375
              NQV+ A G  +YYLE+   E++Q+    +E+EVACLDI+PL +    S P    L A+G
Sbjct:   485 SNQVVVAVGRALYYLEIRPQELRQINCTEMEHEVACLDITPLGDTNGMS-P----LCAIG 539

Query:   376 LWTDISARLLSLPSLEEVCKEPLGGEIIPRSILMTCFEGHCYLLVALGDGSMFYFSLDPA 435
             LWTDISAR+L LPS E + KE LGGEIIPRSILMT FE   YLL ALGDG++FYF L   
Sbjct:   540 LWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLSLE 599

Query:   436 SGRLTDKKKVTLGTQPTVLKTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLRQVNHM 495
             +G L+D+KKVTLGTQPTVL+TFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNL++VN+M
Sbjct:   600 TGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLKEVNYM 659

Query:   496 CSLNAESYPDSLALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTR 555
             C LN++ YPDSLALA +ST T GTIDEIQKLHIRTVPL E+PR+I YQE SQ FGV+++R
Sbjct:   660 CPLNSDGYPDSLALANNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSR 719

Query:   556 IDIQEADG-STPVRPXXXXXXXXXXXXXXXXXXYIKPGSTKQSTANQPADFNMEVEVHNL 614
             I++Q+A G +T +RP                           STA     F  EVEVHNL
Sbjct:   720 IEVQDASGGTTALRPSASTQALSSSVSTSKLFS--------SSTAPHETSFGEEVEVHNL 771

Query:   615 LIIDQNTFE----RNFTSST-DLNLVVAK-----NNRIEIHT--VTPEGLRPVKEIFLYG 662
             LIIDQ+TFE      F  +   L+LV  K     N    + T  V PE   P K+    G
Sbjct:   772 LIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEP-KQ----G 826

Query:   663 KIAVMKFFRGPTD---KKDLLFIITQRTDLN--LVVAKNNRIEIHTVTPE 707
             +I V  +  G      +K++   +    + N  L+ + N+ + ++  T E
Sbjct:   827 RIVVFHYSDGKLQSLAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTAE 876

 Score = 964 (344.4 bits), Expect = 5.5e-193, Sum P(2) = 5.5e-193
 Identities = 181/284 (63%), Positives = 228/284 (80%)

Query:   684 TQRTDLNLVVAKNNRIEIHTVTPEGLRPVKEIFLYGKIAVMKFFRGPTDKKDLLFIITQR 743
             T   DLNL++AKN R+EI+ VT EGLRPVKE+ +YGK AVM+ FR   + KDLLFI+T +
Sbjct:     4 TSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGKTAVMELFRPKGESKDLLFILTAK 63

Query:   744 YNAMILECRGDIDNLEILTKAHGNVSDRIGKPSENGIIAIIDPEARVIGLRLYNGLFKII 803
             YNA ILE + + DN++I+T+AHGNV DRIG+PSE GII IIDPE R+IGLRLY+GLFK+I
Sbjct:    64 YNACILEYKQNGDNIDIITRAHGNVQDRIGRPSETGIIGIIDPECRMIGLRLYDGLFKVI 123

Query:   804 PLEKDNFELKASSIRMEELEIQDVQFLHGCQNPTIICIHQDVNGRHVKTHEISLKEKEFT 863
             PL+++N ELKA +IR+EEL++ DV+FL+GCQ PTI  ++QD  GRHVKT+E+SL+EKEF 
Sbjct:   124 PLDRENKELKAFNIRLEELQVIDVKFLYGCQAPTICFVYQDPQGRHVKTYEVSLREKEFN 183

Query:   864 KTPWKQDNIEMEASLVIPVPEPLGGAIIIGQESILYHSGKSYVAVAPQIIKSSTIVCYAK 923
             K PWKQ+N+E EAS+VI VPEP GGAIIIGQESI YH+G  Y+A+AP IIK STIVC+ +
Sbjct:   184 KGPWKQENVEAEASMVIAVPEPFGGAIIIGQESITYHNGDKYLAIAPPIIKQSTIVCHNR 243

Query:   924 VDANGERYLLGDLAGRLFXXXXXXXXXXDGTFSVKEPKVELLGE 967
             VD NG RYLLGD+ GRLF          DGT ++K+ +VELLGE
Sbjct:   244 VDPNGSRYLLGDMEGRLFMLLLEKEEQMDGTVTLKDLRVELLGE 287

 Score = 928 (331.7 bits), Expect = 5.5e-193, Sum P(2) = 5.5e-193
 Identities = 174/240 (72%), Positives = 206/240 (85%)

Query:   977 SSLSYIKPGSTKQSTANQPADFNMEVEVHNLLIIDQNTFEILHAHQLFPGEYALSLISSK 1036
             SS+S  K  S+  STA     F  EVEVHNLLIIDQ+TFE+LHAHQ    EYALSL+S K
Sbjct:   743 SSVSTSKLFSS--STAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCK 800

Query:  1037 FGEDPNTYFVLGTAVVHPEENEPKQGRIIIFHYDDGKLQQIAEKEIKGACYSMCEFNGKL 1096
              G+DPNTYF++GTA+V+PEE EPKQGRI++FHY DGKLQ +AEKE+KGA YSM EFNGKL
Sbjct:   801 LGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFHYSDGKLQSLAEKEVKGAVYSMVEFNGKL 860

Query:  1097 LASINSTVRLFEWTNEKELRLECSHFNNIIALFLKVKGDFILVGDLMRSLTLLQYKTMEG 1156
             LASINSTVRL+EWT EKELR EC+H+NNI+AL+LK KGDFILVGDLMRS+ LL YK MEG
Sbjct:   861 LASINSTVRLYEWTAEKELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEG 920

Query:  1157 SFEEISRDYNPNWMTSIEILDDELFLGAENSYNLFICQKDSAATSDEDRTHLQEVGTVHL 1216
             +FEEI+RD+NPNWM+++EILDD+ FLGAEN++NLF+CQKDSAAT+DE+R HLQEVG  HL
Sbjct:   921 NFEEIARDFNPNWMSAVEILDDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLSHL 980

 Score = 216 (81.1 bits), Expect = 6.1e-114, Sum P(2) = 6.1e-114
 Identities = 46/68 (67%), Positives = 50/68 (73%)

Query:     1 EGSLRIIRNGIGIEEHACIDLPGIKGIWALSIGSPKNLDNTLVLSFVGHTRVLTLSGAEW 60
             EGSLRIIRNGIGI EHA IDLPGIKG+W L   S + +DN LVLSFVG TRVL L+G E 
Sbjct:   364 EGSLRIIRNGIGIHEHASIDLPGIKGLWPLRSDSHREMDNMLVLSFVGQTRVLMLNGEEV 423

Query:    61 GFHLLRGF 68
                 L GF
Sbjct:   424 EETELTGF 431

 Score = 210 (79.0 bits), Expect = 2.6e-113, Sum P(2) = 2.6e-113
 Identities = 42/81 (51%), Positives = 58/81 (71%)

Query:   625 NFTSSTDLNLVVAKNNRIEIHTVTPEGLRPVKEIFLYGKIAVMKFFRGPTDKKDLLFIIT 684
             +FTS+ DLNL++AKN R+EI+ VT EGLRPVKE+ +YGK AVM+ FR   + KDLLFI+T
Sbjct:     2 HFTSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGKTAVMELFRPKGESKDLLFILT 61

Query:   685 QRTDLNLVVAKNNRIEIHTVT 705
              + +  ++  K N   I  +T
Sbjct:    62 AKYNACILEYKQNGDNIDIIT 82

 Score = 43 (20.2 bits), Expect = 1.1e-95, Sum P(2) = 1.1e-95
 Identities = 11/26 (42%), Positives = 13/26 (50%)

Query:   396 EPLGGEIIPRSILMTCFEGHCYLLVA 421
             EP GG II     +T   G  YL +A
Sbjct:   204 EPFGGAIIIGQESITYHNGDKYLAIA 229


>UNIPROTKB|Q805F9 [details] [associations]
            symbol:DDB1 "DNA damage-binding protein 1" species:9031
            "Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0016567
            "protein ubiquitination" evidence=IEA] [GO:0005654 "nucleoplasm"
            evidence=TAS] [GO:0006281 "DNA repair" evidence=TAS] [GO:0080008
            "Cul4-RING ubiquitin ligase complex" evidence=ISS] [GO:0031465
            "Cul4B-RING ubiquitin ligase complex" evidence=ISS] [GO:0005634
            "nucleus" evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS]
            [GO:0043161 "proteasomal ubiquitin-dependent protein catabolic
            process" evidence=ISS] [GO:0031464 "Cul4A-RING ubiquitin ligase
            complex" evidence=ISS] InterPro:IPR004871 InterPro:IPR015943
            Pfam:PF03178 UniPathway:UPA00143 GO:GO:0005737 GO:GO:0005654
            GO:GO:0043161 Gene3D:2.130.10.10 GO:GO:0003677 GO:GO:0006281
            GO:GO:0016567 Reactome:REACT_115612 GO:GO:0031464 GO:GO:0031465
            eggNOG:NOG247734 HOGENOM:HOG000007241 KO:K10610 CTD:1642
            HOVERGEN:HBG005460 OrthoDB:EOG4KPT91 HSSP:Q16531 EMBL:AB074298
            EMBL:AJ719779 IPI:IPI00597295 RefSeq:NP_989547.1 UniGene:Gga.12977
            STRING:Q805F9 PRIDE:Q805F9 GeneID:374050 KEGG:gga:374050
            NextBio:20813572 Uniprot:Q805F9
        Length = 1140

 Score = 1731 (614.4 bits), Expect = 2.7e-178, P = 2.7e-178
 Identities = 373/650 (57%), Positives = 450/650 (69%)

Query:    76 NGWSERYLLGDLAGRLFXXXXXXXXXXDGTFSVKEPKVELLGEISIPECLTYLDNGVVFV 135
             NG   RYLLGD+ GRLF          DGT ++K+ +VELLGE SI ECLTYLDNGVVFV
Sbjct:   267 NG--SRYLLGDMEGRLFMLLLEKEEQMDGTVTLKDLRVELLGETSIAECLTYLDNGVVFV 324

Query:   136 GSRLGDSQLVKLNRSPDENGTYVSVMESFTNLAPIIDMVVVDLERQGQGQLVTCSGGFKE 195
             GSRLGDSQLVKLN   +E G+YV  ME+FTNL PI+DM VVDLERQGQGQLVTCSG FKE
Sbjct:   325 GSRLGDSQLVKLNVDSNEQGSYVVAMETFTNLGPIVDMCVVDLERQGQGQLVTCSGAFKE 384

Query:   196 GSLRIIRNGIGIEEHACIDLPGIKGIWALSIGSPKNLDNTLVLSFVGHTRVLTLSGAEVE 255
             GSLRIIRNGIGI EHA IDLPGIKG+W L   S + +DN LVLSFVG TRVL L+G EVE
Sbjct:   385 GSLRIIRNGIGIHEHASIDLPGIKGLWPLRSDSHREMDNMLVLSFVGQTRVLMLNGEEVE 444

Query:   256 ETEMGGFTSDQQTFYCGNVDPRTVLQVTPSAAILISTESKARVSSWEPPNGKSISVVSCN 315
             ETE+ GF  DQQTF+CGNV  + ++Q+T ++  L+S E KA VS W+ PNGK+ISV SCN
Sbjct:   445 ETELTGFVDDQQTFFCGNVAHQQLIQITSASVRLVSQEPKALVSEWKEPNGKNISVASCN 504

Query:   316 KNQVLCATGCDVYYLEVHGSEIKQLAHRALEYEVACLDISPLSNEETSSEPAKAQLAAVG 375
              NQV+ A G  +YYLE+   E++Q+    +E+EVACLDI+PL +    S P    L A+G
Sbjct:   505 SNQVVVAVGRALYYLEIRPQELRQINCTEMEHEVACLDITPLGDTNGMS-P----LCAIG 559

Query:   376 LWTDISARLLSLPSLEEVCKEPLGGEIIPRSILMTCFEGHCYLLVALGDGSMFYFSLDPA 435
             LWTDISAR+L LPS E + KE LGGEIIPRSILMT FE   YLL ALGDG++FYF L   
Sbjct:   560 LWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLSLE 619

Query:   436 SGRLTDKKKVTLGTQPTVLKTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLRQVNHM 495
             +G L+D+KKVTLGTQPTVL+TFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNL++VN+M
Sbjct:   620 TGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLKEVNYM 679

Query:   496 CSLNAESYPDSLALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTR 555
             C LN++ YPDSLALA +ST T GTIDEIQKLHIRTVPL E+PR+I YQE SQ FGV+++R
Sbjct:   680 CPLNSDGYPDSLALANNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSR 739

Query:   556 IDIQEADG-STPVRPXXXXXXXXXXXXXXXXXXYIKPGSTKQSTANQPADFNMEVEVHNL 614
             I++Q+A G +T +RP                           STA     F  EVEVHNL
Sbjct:   740 IEVQDASGGTTALRPSASTQALSSSVSTSKLFS--------SSTAPHETSFGEEVEVHNL 791

Query:   615 LIIDQNTFE----RNFTSST-DLNLVVAK-----NNRIEIHT--VTPEGLRPVKEIFLYG 662
             LIIDQ+TFE      F  +   L+LV  K     N    + T  V PE   P K+    G
Sbjct:   792 LIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEP-KQ----G 846

Query:   663 KIAVMKFFRGPTD---KKDLLFIITQRTDLN--LVVAKNNRIEIHTVTPE 707
             +I V  +  G      +K++   +    + N  L+ + N+ + ++  T E
Sbjct:   847 RIVVFHYSDGKLQSLAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTAE 896

 Score = 964 (344.4 bits), Expect = 5.5e-193, Sum P(2) = 5.5e-193
 Identities = 181/284 (63%), Positives = 228/284 (80%)

Query:   684 TQRTDLNLVVAKNNRIEIHTVTPEGLRPVKEIFLYGKIAVMKFFRGPTDKKDLLFIITQR 743
             T   DLNL++AKN R+EI+ VT EGLRPVKE+ +YGK AVM+ FR   + KDLLFI+T +
Sbjct:    24 TSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGKTAVMELFRPKGESKDLLFILTAK 83

Query:   744 YNAMILECRGDIDNLEILTKAHGNVSDRIGKPSENGIIAIIDPEARVIGLRLYNGLFKII 803
             YNA ILE + + DN++I+T+AHGNV DRIG+PSE GII IIDPE R+IGLRLY+GLFK+I
Sbjct:    84 YNACILEYKQNGDNIDIITRAHGNVQDRIGRPSETGIIGIIDPECRMIGLRLYDGLFKVI 143

Query:   804 PLEKDNFELKASSIRMEELEIQDVQFLHGCQNPTIICIHQDVNGRHVKTHEISLKEKEFT 863
             PL+++N ELKA +IR+EEL++ DV+FL+GCQ PTI  ++QD  GRHVKT+E+SL+EKEF 
Sbjct:   144 PLDRENKELKAFNIRLEELQVIDVKFLYGCQAPTICFVYQDPQGRHVKTYEVSLREKEFN 203

Query:   864 KTPWKQDNIEMEASLVIPVPEPLGGAIIIGQESILYHSGKSYVAVAPQIIKSSTIVCYAK 923
             K PWKQ+N+E EAS+VI VPEP GGAIIIGQESI YH+G  Y+A+AP IIK STIVC+ +
Sbjct:   204 KGPWKQENVEAEASMVIAVPEPFGGAIIIGQESITYHNGDKYLAIAPPIIKQSTIVCHNR 263

Query:   924 VDANGERYLLGDLAGRLFXXXXXXXXXXDGTFSVKEPKVELLGE 967
             VD NG RYLLGD+ GRLF          DGT ++K+ +VELLGE
Sbjct:   264 VDPNGSRYLLGDMEGRLFMLLLEKEEQMDGTVTLKDLRVELLGE 307

 Score = 928 (331.7 bits), Expect = 5.5e-193, Sum P(2) = 5.5e-193
 Identities = 174/240 (72%), Positives = 206/240 (85%)

Query:   977 SSLSYIKPGSTKQSTANQPADFNMEVEVHNLLIIDQNTFEILHAHQLFPGEYALSLISSK 1036
             SS+S  K  S+  STA     F  EVEVHNLLIIDQ+TFE+LHAHQ    EYALSL+S K
Sbjct:   763 SSVSTSKLFSS--STAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCK 820

Query:  1037 FGEDPNTYFVLGTAVVHPEENEPKQGRIIIFHYDDGKLQQIAEKEIKGACYSMCEFNGKL 1096
              G+DPNTYF++GTA+V+PEE EPKQGRI++FHY DGKLQ +AEKE+KGA YSM EFNGKL
Sbjct:   821 LGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFHYSDGKLQSLAEKEVKGAVYSMVEFNGKL 880

Query:  1097 LASINSTVRLFEWTNEKELRLECSHFNNIIALFLKVKGDFILVGDLMRSLTLLQYKTMEG 1156
             LASINSTVRL+EWT EKELR EC+H+NNI+AL+LK KGDFILVGDLMRS+ LL YK MEG
Sbjct:   881 LASINSTVRLYEWTAEKELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEG 940

Query:  1157 SFEEISRDYNPNWMTSIEILDDELFLGAENSYNLFICQKDSAATSDEDRTHLQEVGTVHL 1216
             +FEEI+RD+NPNWM+++EILDD+ FLGAEN++NLF+CQKDSAAT+DE+R HLQEVG  HL
Sbjct:   941 NFEEIARDFNPNWMSAVEILDDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLSHL 1000

 Score = 216 (81.1 bits), Expect = 6.1e-114, Sum P(2) = 6.1e-114
 Identities = 46/68 (67%), Positives = 50/68 (73%)

Query:     1 EGSLRIIRNGIGIEEHACIDLPGIKGIWALSIGSPKNLDNTLVLSFVGHTRVLTLSGAEW 60
             EGSLRIIRNGIGI EHA IDLPGIKG+W L   S + +DN LVLSFVG TRVL L+G E 
Sbjct:   384 EGSLRIIRNGIGIHEHASIDLPGIKGLWPLRSDSHREMDNMLVLSFVGQTRVLMLNGEEV 443

Query:    61 GFHLLRGF 68
                 L GF
Sbjct:   444 EETELTGF 451

 Score = 210 (79.0 bits), Expect = 2.6e-113, Sum P(2) = 2.6e-113
 Identities = 42/81 (51%), Positives = 58/81 (71%)

Query:   625 NFTSSTDLNLVVAKNNRIEIHTVTPEGLRPVKEIFLYGKIAVMKFFRGPTDKKDLLFIIT 684
             +FTS+ DLNL++AKN R+EI+ VT EGLRPVKE+ +YGK AVM+ FR   + KDLLFI+T
Sbjct:    22 HFTSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGKTAVMELFRPKGESKDLLFILT 81

Query:   685 QRTDLNLVVAKNNRIEIHTVT 705
              + +  ++  K N   I  +T
Sbjct:    82 AKYNACILEYKQNGDNIDIIT 102

 Score = 43 (20.2 bits), Expect = 1.1e-95, Sum P(2) = 1.1e-95
 Identities = 11/26 (42%), Positives = 13/26 (50%)

Query:   396 EPLGGEIIPRSILMTCFEGHCYLLVA 421
             EP GG II     +T   G  YL +A
Sbjct:   224 EPFGGAIIIGQESITYHNGDKYLAIA 249


>MGI|MGI:1202384 [details] [associations]
            symbol:Ddb1 "damage specific DNA binding protein 1"
            species:10090 "Mus musculus" [GO:0000075 "cell cycle checkpoint"
            evidence=ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003677 "DNA binding" evidence=IEA] [GO:0003684 "damaged DNA
            binding" evidence=ISO] [GO:0005634 "nucleus" evidence=ISO]
            [GO:0005737 "cytoplasm" evidence=ISO] [GO:0006281 "DNA repair"
            evidence=IEA] [GO:0006974 "response to DNA damage stimulus"
            evidence=IEA] [GO:0016055 "Wnt receptor signaling pathway"
            evidence=IDA] [GO:0031464 "Cul4A-RING ubiquitin ligase complex"
            evidence=ISO] [GO:0031465 "Cul4B-RING ubiquitin ligase complex"
            evidence=ISO] [GO:0042787 "protein ubiquitination involved in
            ubiquitin-dependent protein catabolic process" evidence=ISO]
            [GO:0043161 "proteasomal ubiquitin-dependent protein catabolic
            process" evidence=ISO] [GO:0080008 "Cul4-RING ubiquitin ligase
            complex" evidence=ISO] InterPro:IPR004871 InterPro:IPR015943
            Pfam:PF03178 UniPathway:UPA00143 MGI:MGI:1202384 GO:GO:0005634
            GO:GO:0005737 GO:GO:0043161 GO:GO:0016055 Gene3D:2.130.10.10
            GO:GO:0003684 GO:GO:0006281 GO:GO:0042787 GO:GO:0000075
            GO:GO:0031464 GO:GO:0031465 eggNOG:NOG247734 KO:K10610 OMA:CALGDGS
            CTD:1642 GeneTree:ENSGT00530000063396 HOVERGEN:HBG005460
            HSSP:Q16531 ChiTaRS:DDB1 EMBL:AB026432 EMBL:AF159853 EMBL:AK146522
            EMBL:AK152228 EMBL:AK154303 EMBL:AK155020 EMBL:AK155920
            EMBL:AK157491 EMBL:BC002210 EMBL:BC009661 IPI:IPI00316740
            PIR:JC7152 RefSeq:NP_056550.1 UniGene:Mm.289915 UniGene:Mm.466856
            ProteinModelPortal:Q3U1J4 SMR:Q3U1J4 IntAct:Q3U1J4 STRING:Q3U1J4
            PaxDb:Q3U1J4 PRIDE:Q3U1J4 Ensembl:ENSMUST00000025649 GeneID:13194
            KEGG:mmu:13194 UCSC:uc008gqm.1 InParanoid:Q3U1J4 NextBio:283320
            Bgee:Q3U1J4 CleanEx:MM_DDB1 Genevestigator:Q3U1J4 Uniprot:Q3U1J4
        Length = 1140

 Score = 1731 (614.4 bits), Expect = 2.7e-178, P = 2.7e-178
 Identities = 370/650 (56%), Positives = 453/650 (69%)

Query:    76 NGWSERYLLGDLAGRLFXXXXXXXXXXDGTFSVKEPKVELLGEISIPECLTYLDNGVVFV 135
             NG   RYLLGD+ GRLF          DGT ++K+ +VELLGE SI ECLTYLDNGVVFV
Sbjct:   267 NG--SRYLLGDMEGRLFMLLLEKEEQMDGTVTLKDLRVELLGETSIAECLTYLDNGVVFV 324

Query:   136 GSRLGDSQLVKLNRSPDENGTYVSVMESFTNLAPIIDMVVVDLERQGQGQLVTCSGGFKE 195
             GSRLGDSQLVKLN   +E G+YV  ME+FTNL PI+DM VVDLERQGQGQLVTCSG FKE
Sbjct:   325 GSRLGDSQLVKLNVDSNEQGSYVVAMETFTNLGPIVDMCVVDLERQGQGQLVTCSGAFKE 384

Query:   196 GSLRIIRNGIGIEEHACIDLPGIKGIWALSIGSPKNLDNTLVLSFVGHTRVLTLSGAEVE 255
             GSLRIIRNGIGI EHA IDLPGIKG+W L     +  D+TLVLSFVG TRVL L+G EVE
Sbjct:   385 GSLRIIRNGIGIHEHASIDLPGIKGLWPLRSDPGRETDDTLVLSFVGQTRVLMLNGEEVE 444

Query:   256 ETEMGGFTSDQQTFYCGNVDPRTVLQVTPSAAILISTESKARVSSWEPPNGKSISVVSCN 315
             ETE+ GF  DQQTF+CGNV  + ++Q+T ++  L+S E KA VS W+ P GK+ISV SCN
Sbjct:   445 ETELMGFVDDQQTFFCGNVAHQQLIQITSASVRLVSQEPKALVSEWKEPQGKNISVASCN 504

Query:   316 KNQVLCATGCDVYYLEVHGSEIKQLAHRALEYEVACLDISPLSNEETSSEPAKAQLAAVG 375
              +QV+ A G  +YYL++H  E++Q++H  +E+EVACLDI+PL +    S P    L A+G
Sbjct:   505 SSQVVVAVGRALYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGLS-P----LCAIG 559

Query:   376 LWTDISARLLSLPSLEEVCKEPLGGEIIPRSILMTCFEGHCYLLVALGDGSMFYFSLDPA 435
             LWTDISAR+L LPS E + KE LGGEIIPRSILMT FE   YLL ALGDG++FYF L+  
Sbjct:   560 LWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLNIE 619

Query:   436 SGRLTDKKKVTLGTQPTVLKTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLRQVNHM 495
             +G L+D+KKVTLGTQPTVL+TFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNL++VN+M
Sbjct:   620 TGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLKEVNYM 679

Query:   496 CSLNAESYPDSLALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTR 555
             C LN++ YPDSLALA +ST T GTIDEIQKLHIRTVPL E+PR+I YQE SQ FGV+++R
Sbjct:   680 CPLNSDGYPDSLALANNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSR 739

Query:   556 IDIQEADG-STPVRPXXXXXXXXXXXXXXXXXXYIKPGSTKQSTANQPADFNMEVEVHNL 614
             I++Q++ G +T +RP                           STA     F  EVEVHNL
Sbjct:   740 IEVQDSSGGTTALRPSASTQALSSSVSSSKLFS--------SSTAPHETSFGEEVEVHNL 791

Query:   615 LIIDQNTFE----RNFTSST-DLNLVVAK-----NNRIEIHT--VTPEGLRPVKEIFLYG 662
             LIIDQ+TFE      F  +   L+LV  K     N    + T  V PE   P K+    G
Sbjct:   792 LIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEP-KQ----G 846

Query:   663 KIAVMKFFRGPTD---KKDLLFIITQRTDLN--LVVAKNNRIEIHTVTPE 707
             +I V ++  G      +K++   +    + N  L+ + N+ + ++  T E
Sbjct:   847 RIVVFQYSDGKLQTVAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTTE 896

 Score = 961 (343.3 bits), Expect = 3.9e-192, Sum P(2) = 3.9e-192
 Identities = 181/284 (63%), Positives = 227/284 (79%)

Query:   684 TQRTDLNLVVAKNNRIEIHTVTPEGLRPVKEIFLYGKIAVMKFFRGPTDKKDLLFIITQR 743
             T   DLNL++AKN R+EI+ VT EGLRPVKE+ +YGKIAVM+ FR   + KDLLFI+T +
Sbjct:    24 TSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGKIAVMELFRPKGESKDLLFILTAK 83

Query:   744 YNAMILECRGDIDNLEILTKAHGNVSDRIGKPSENGIIAIIDPEARVIGLRLYNGLFKII 803
             YNA ILE +   ++++I+T+AHGNV DRIG+PSE GII IIDPE R+IGLRLY+GLFK+I
Sbjct:    84 YNACILEYKQSGESIDIITRAHGNVQDRIGRPSETGIIGIIDPECRMIGLRLYDGLFKVI 143

Query:   804 PLEKDNFELKASSIRMEELEIQDVQFLHGCQNPTIICIHQDVNGRHVKTHEISLKEKEFT 863
             PL++DN ELKA +IR+EEL + DV+FL+GCQ PTI  ++QD  GRHVKT+E+SL+EKEF 
Sbjct:   144 PLDRDNKELKAFNIRLEELHVIDVKFLYGCQAPTICFVYQDPQGRHVKTYEVSLREKEFN 203

Query:   864 KTPWKQDNIEMEASLVIPVPEPLGGAIIIGQESILYHSGKSYVAVAPQIIKSSTIVCYAK 923
             K PWKQ+N+E EAS+VI VPEP GGAIIIGQESI YH+G  Y+A+AP IIK STIVC+ +
Sbjct:   204 KGPWKQENVEAEASMVIAVPEPFGGAIIIGQESITYHNGDKYLAIAPPIIKQSTIVCHNR 263

Query:   924 VDANGERYLLGDLAGRLFXXXXXXXXXXDGTFSVKEPKVELLGE 967
             VD NG RYLLGD+ GRLF          DGT ++K+ +VELLGE
Sbjct:   264 VDPNGSRYLLGDMEGRLFMLLLEKEEQMDGTVTLKDLRVELLGE 307

 Score = 923 (330.0 bits), Expect = 3.9e-192, Sum P(2) = 3.9e-192
 Identities = 173/240 (72%), Positives = 205/240 (85%)

Query:   977 SSLSYIKPGSTKQSTANQPADFNMEVEVHNLLIIDQNTFEILHAHQLFPGEYALSLISSK 1036
             SS+S  K  S+  STA     F  EVEVHNLLIIDQ+TFE+LHAHQ    EYALSL+S K
Sbjct:   763 SSVSSSKLFSS--STAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCK 820

Query:  1037 FGEDPNTYFVLGTAVVHPEENEPKQGRIIIFHYDDGKLQQIAEKEIKGACYSMCEFNGKL 1096
              G+DPNTYF++GTA+V+PEE EPKQGRI++F Y DGKLQ +AEKE+KGA YSM EFNGKL
Sbjct:   821 LGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEFNGKL 880

Query:  1097 LASINSTVRLFEWTNEKELRLECSHFNNIIALFLKVKGDFILVGDLMRSLTLLQYKTMEG 1156
             LASINSTVRL+EWT EKELR EC+H+NNI+AL+LK KGDFILVGDLMRS+ LL YK MEG
Sbjct:   881 LASINSTVRLYEWTTEKELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEG 940

Query:  1157 SFEEISRDYNPNWMTSIEILDDELFLGAENSYNLFICQKDSAATSDEDRTHLQEVGTVHL 1216
             +FEEI+RD+NPNWM+++EILDD+ FLGAEN++NLF+CQKDSAAT+DE+R HLQEVG  HL
Sbjct:   941 NFEEIARDFNPNWMSAVEILDDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFHL 1000

 Score = 210 (79.0 bits), Expect = 8.9e-113, Sum P(2) = 8.9e-113
 Identities = 42/81 (51%), Positives = 59/81 (72%)

Query:   625 NFTSSTDLNLVVAKNNRIEIHTVTPEGLRPVKEIFLYGKIAVMKFFRGPTDKKDLLFIIT 684
             +FTS+ DLNL++AKN R+EI+ VT EGLRPVKE+ +YGKIAVM+ FR   + KDLLFI+T
Sbjct:    22 HFTSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGKIAVMELFRPKGESKDLLFILT 81

Query:   685 QRTDLNLVVAKNNRIEIHTVT 705
              + +  ++  K +   I  +T
Sbjct:    82 AKYNACILEYKQSGESIDIIT 102

 Score = 209 (78.6 bits), Expect = 1.1e-112, Sum P(2) = 1.1e-112
 Identities = 45/68 (66%), Positives = 49/68 (72%)

Query:     1 EGSLRIIRNGIGIEEHACIDLPGIKGIWALSIGSPKNLDNTLVLSFVGHTRVLTLSGAEW 60
             EGSLRIIRNGIGI EHA IDLPGIKG+W L     +  D+TLVLSFVG TRVL L+G E 
Sbjct:   384 EGSLRIIRNGIGIHEHASIDLPGIKGLWPLRSDPGRETDDTLVLSFVGQTRVLMLNGEEV 443

Query:    61 GFHLLRGF 68
                 L GF
Sbjct:   444 EETELMGF 451

 Score = 43 (20.2 bits), Expect = 3.8e-95, Sum P(2) = 3.8e-95
 Identities = 11/26 (42%), Positives = 13/26 (50%)

Query:   396 EPLGGEIIPRSILMTCFEGHCYLLVA 421
             EP GG II     +T   G  YL +A
Sbjct:   224 EPFGGAIIIGQESITYHNGDKYLAIA 249


>UNIPROTKB|E2R9E3 [details] [associations]
            symbol:DDB1 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0043161 "proteasomal ubiquitin-dependent
            protein catabolic process" evidence=IEA] [GO:0042787 "protein
            ubiquitination involved in ubiquitin-dependent protein catabolic
            process" evidence=IEA] [GO:0031465 "Cul4B-RING ubiquitin ligase
            complex" evidence=IEA] [GO:0031464 "Cul4A-RING ubiquitin ligase
            complex" evidence=IEA] [GO:0016055 "Wnt receptor signaling pathway"
            evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0000075
            "cell cycle checkpoint" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR004871 InterPro:IPR015943 Pfam:PF03178 GO:GO:0005634
            GO:GO:0005737 GO:GO:0043161 GO:GO:0016055 Gene3D:2.130.10.10
            GO:GO:0003676 GO:GO:0042787 GO:GO:0000075 GO:GO:0031464
            GO:GO:0031465 KO:K10610 OMA:CALGDGS CTD:1642
            GeneTree:ENSGT00530000063396 EMBL:AAEX03011677 RefSeq:XP_533275.2
            Ensembl:ENSCAFT00000025824 GeneID:476067 KEGG:cfa:476067
            NextBio:20851798 Uniprot:E2R9E3
        Length = 1140

 Score = 1730 (614.0 bits), Expect = 3.5e-178, P = 3.5e-178
 Identities = 370/650 (56%), Positives = 452/650 (69%)

Query:    76 NGWSERYLLGDLAGRLFXXXXXXXXXXDGTFSVKEPKVELLGEISIPECLTYLDNGVVFV 135
             NG   RYLLGD+ GRLF          DGT ++K+ +VELLGE SI ECLTYLDNGVVFV
Sbjct:   267 NG--SRYLLGDMEGRLFMLLLEKEEQMDGTVTLKDLRVELLGETSIAECLTYLDNGVVFV 324

Query:   136 GSRLGDSQLVKLNRSPDENGTYVSVMESFTNLAPIIDMVVVDLERQGQGQLVTCSGGFKE 195
             GSRLGDSQLVKLN   +E G+YV  ME+FTNL PI+DM VVDLERQGQGQLVTCSG FKE
Sbjct:   325 GSRLGDSQLVKLNVDSNEQGSYVVAMETFTNLGPIVDMCVVDLERQGQGQLVTCSGAFKE 384

Query:   196 GSLRIIRNGIGIEEHACIDLPGIKGIWALSIGSPKNLDNTLVLSFVGHTRVLTLSGAEVE 255
             GSLRIIRNGIGI EHA IDLPGIKG+W L     +  D+TLVLSFVG TRVL L+G EVE
Sbjct:   385 GSLRIIRNGIGIHEHASIDLPGIKGLWPLRSDPNRETDDTLVLSFVGQTRVLMLNGEEVE 444

Query:   256 ETEMGGFTSDQQTFYCGNVDPRTVLQVTPSAAILISTESKARVSSWEPPNGKSISVVSCN 315
             ETE+ GF  DQQTF+CGNV  + ++Q+T ++  L+S E KA VS W+ P GK+ISV SCN
Sbjct:   445 ETELMGFVDDQQTFFCGNVAHQQLIQITSASVRLVSQEPKALVSEWKEPQGKNISVASCN 504

Query:   316 KNQVLCATGCDVYYLEVHGSEIKQLAHRALEYEVACLDISPLSNEETSSEPAKAQLAAVG 375
              +QV+ A G  +YYL++H  E++Q++H  +E+EVACLDI+PL +    S P    L A+G
Sbjct:   505 SSQVVVAVGRALYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGLS-P----LCAIG 559

Query:   376 LWTDISARLLSLPSLEEVCKEPLGGEIIPRSILMTCFEGHCYLLVALGDGSMFYFSLDPA 435
             LWTDISAR+L LPS E + KE LGGEIIPRSILMT FE   YLL ALGDG++FYF L+  
Sbjct:   560 LWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLNIE 619

Query:   436 SGRLTDKKKVTLGTQPTVLKTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLRQVNHM 495
             +G L+D+KKVTLGTQPTVL+TFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNL++VN+M
Sbjct:   620 TGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLKEVNYM 679

Query:   496 CSLNAESYPDSLALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTR 555
             C LN++ YPDSLALA +ST T GTIDEIQKLHIRTVPL E+PR+I YQE SQ FGV+++R
Sbjct:   680 CPLNSDGYPDSLALANNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSR 739

Query:   556 IDIQEADG-STPVRPXXXXXXXXXXXXXXXXXXYIKPGSTKQSTANQPADFNMEVEVHNL 614
             I++Q+  G +T +RP                           STA     F  EVEVHNL
Sbjct:   740 IEVQDTSGGTTALRPSASTQALSSSVSSSKLFS--------SSTAPHETSFGEEVEVHNL 791

Query:   615 LIIDQNTFE----RNFTSST-DLNLVVAK-----NNRIEIHT--VTPEGLRPVKEIFLYG 662
             LIIDQ+TFE      F  +   L+LV  K     N    + T  V PE   P K+    G
Sbjct:   792 LIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEP-KQ----G 846

Query:   663 KIAVMKFFRGPTD---KKDLLFIITQRTDLN--LVVAKNNRIEIHTVTPE 707
             +I V ++  G      +K++   +    + N  L+ + N+ + ++  T E
Sbjct:   847 RIVVFQYSDGKLQTVAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTTE 896

 Score = 961 (343.3 bits), Expect = 3.9e-192, Sum P(2) = 3.9e-192
 Identities = 181/284 (63%), Positives = 227/284 (79%)

Query:   684 TQRTDLNLVVAKNNRIEIHTVTPEGLRPVKEIFLYGKIAVMKFFRGPTDKKDLLFIITQR 743
             T   DLNL++AKN R+EI+ VT EGLRPVKE+ +YGKIAVM+ FR   + KDLLFI+T +
Sbjct:    24 TSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGKIAVMELFRPKGESKDLLFILTAK 83

Query:   744 YNAMILECRGDIDNLEILTKAHGNVSDRIGKPSENGIIAIIDPEARVIGLRLYNGLFKII 803
             YNA ILE +   ++++I+T+AHGNV DRIG+PSE GII IIDPE R+IGLRLY+GLFK+I
Sbjct:    84 YNACILEYKQSGESIDIITRAHGNVQDRIGRPSETGIIGIIDPECRMIGLRLYDGLFKVI 143

Query:   804 PLEKDNFELKASSIRMEELEIQDVQFLHGCQNPTIICIHQDVNGRHVKTHEISLKEKEFT 863
             PL++DN ELKA +IR+EEL + DV+FL+GCQ PTI  ++QD  GRHVKT+E+SL+EKEF 
Sbjct:   144 PLDRDNKELKAFNIRLEELHVIDVKFLYGCQAPTICFVYQDPQGRHVKTYEVSLREKEFN 203

Query:   864 KTPWKQDNIEMEASLVIPVPEPLGGAIIIGQESILYHSGKSYVAVAPQIIKSSTIVCYAK 923
             K PWKQ+N+E EAS+VI VPEP GGAIIIGQESI YH+G  Y+A+AP IIK STIVC+ +
Sbjct:   204 KGPWKQENVEAEASMVIAVPEPFGGAIIIGQESITYHNGDKYLAIAPPIIKQSTIVCHNR 263

Query:   924 VDANGERYLLGDLAGRLFXXXXXXXXXXDGTFSVKEPKVELLGE 967
             VD NG RYLLGD+ GRLF          DGT ++K+ +VELLGE
Sbjct:   264 VDPNGSRYLLGDMEGRLFMLLLEKEEQMDGTVTLKDLRVELLGE 307

 Score = 923 (330.0 bits), Expect = 3.9e-192, Sum P(2) = 3.9e-192
 Identities = 173/240 (72%), Positives = 205/240 (85%)

Query:   977 SSLSYIKPGSTKQSTANQPADFNMEVEVHNLLIIDQNTFEILHAHQLFPGEYALSLISSK 1036
             SS+S  K  S+  STA     F  EVEVHNLLIIDQ+TFE+LHAHQ    EYALSL+S K
Sbjct:   763 SSVSSSKLFSS--STAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCK 820

Query:  1037 FGEDPNTYFVLGTAVVHPEENEPKQGRIIIFHYDDGKLQQIAEKEIKGACYSMCEFNGKL 1096
              G+DPNTYF++GTA+V+PEE EPKQGRI++F Y DGKLQ +AEKE+KGA YSM EFNGKL
Sbjct:   821 LGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEFNGKL 880

Query:  1097 LASINSTVRLFEWTNEKELRLECSHFNNIIALFLKVKGDFILVGDLMRSLTLLQYKTMEG 1156
             LASINSTVRL+EWT EKELR EC+H+NNI+AL+LK KGDFILVGDLMRS+ LL YK MEG
Sbjct:   881 LASINSTVRLYEWTTEKELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEG 940

Query:  1157 SFEEISRDYNPNWMTSIEILDDELFLGAENSYNLFICQKDSAATSDEDRTHLQEVGTVHL 1216
             +FEEI+RD+NPNWM+++EILDD+ FLGAEN++NLF+CQKDSAAT+DE+R HLQEVG  HL
Sbjct:   941 NFEEIARDFNPNWMSAVEILDDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFHL 1000

 Score = 210 (79.0 bits), Expect = 8.9e-113, Sum P(2) = 8.9e-113
 Identities = 42/81 (51%), Positives = 59/81 (72%)

Query:   625 NFTSSTDLNLVVAKNNRIEIHTVTPEGLRPVKEIFLYGKIAVMKFFRGPTDKKDLLFIIT 684
             +FTS+ DLNL++AKN R+EI+ VT EGLRPVKE+ +YGKIAVM+ FR   + KDLLFI+T
Sbjct:    22 HFTSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGKIAVMELFRPKGESKDLLFILT 81

Query:   685 QRTDLNLVVAKNNRIEIHTVT 705
              + +  ++  K +   I  +T
Sbjct:    82 AKYNACILEYKQSGESIDIIT 102

 Score = 209 (78.6 bits), Expect = 1.1e-112, Sum P(2) = 1.1e-112
 Identities = 45/68 (66%), Positives = 49/68 (72%)

Query:     1 EGSLRIIRNGIGIEEHACIDLPGIKGIWALSIGSPKNLDNTLVLSFVGHTRVLTLSGAEW 60
             EGSLRIIRNGIGI EHA IDLPGIKG+W L     +  D+TLVLSFVG TRVL L+G E 
Sbjct:   384 EGSLRIIRNGIGIHEHASIDLPGIKGLWPLRSDPNRETDDTLVLSFVGQTRVLMLNGEEV 443

Query:    61 GFHLLRGF 68
                 L GF
Sbjct:   444 EETELMGF 451

 Score = 43 (20.2 bits), Expect = 3.8e-95, Sum P(2) = 3.8e-95
 Identities = 11/26 (42%), Positives = 13/26 (50%)

Query:   396 EPLGGEIIPRSILMTCFEGHCYLLVA 421
             EP GG II     +T   G  YL +A
Sbjct:   224 EPFGGAIIIGQESITYHNGDKYLAIA 249


>UNIPROTKB|J9NVR7 [details] [associations]
            symbol:DDB1 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] InterPro:IPR004871
            InterPro:IPR015943 Pfam:PF03178 GO:GO:0005634 Gene3D:2.130.10.10
            GO:GO:0003676 GeneTree:ENSGT00530000063396 EMBL:AAEX03011677
            Ensembl:ENSCAFT00000049486 Uniprot:J9NVR7
        Length = 1084

 Score = 1730 (614.0 bits), Expect = 3.5e-178, P = 3.5e-178
 Identities = 370/650 (56%), Positives = 452/650 (69%)

Query:    76 NGWSERYLLGDLAGRLFXXXXXXXXXXDGTFSVKEPKVELLGEISIPECLTYLDNGVVFV 135
             NG   RYLLGD+ GRLF          DGT ++K+ +VELLGE SI ECLTYLDNGVVFV
Sbjct:   267 NG--SRYLLGDMEGRLFMLLLEKEEQMDGTVTLKDLRVELLGETSIAECLTYLDNGVVFV 324

Query:   136 GSRLGDSQLVKLNRSPDENGTYVSVMESFTNLAPIIDMVVVDLERQGQGQLVTCSGGFKE 195
             GSRLGDSQLVKLN   +E G+YV  ME+FTNL PI+DM VVDLERQGQGQLVTCSG FKE
Sbjct:   325 GSRLGDSQLVKLNVDSNEQGSYVVAMETFTNLGPIVDMCVVDLERQGQGQLVTCSGAFKE 384

Query:   196 GSLRIIRNGIGIEEHACIDLPGIKGIWALSIGSPKNLDNTLVLSFVGHTRVLTLSGAEVE 255
             GSLRIIRNGIGI EHA IDLPGIKG+W L     +  D+TLVLSFVG TRVL L+G EVE
Sbjct:   385 GSLRIIRNGIGIHEHASIDLPGIKGLWPLRSDPNRETDDTLVLSFVGQTRVLMLNGEEVE 444

Query:   256 ETEMGGFTSDQQTFYCGNVDPRTVLQVTPSAAILISTESKARVSSWEPPNGKSISVVSCN 315
             ETE+ GF  DQQTF+CGNV  + ++Q+T ++  L+S E KA VS W+ P GK+ISV SCN
Sbjct:   445 ETELMGFVDDQQTFFCGNVAHQQLIQITSASVRLVSQEPKALVSEWKEPQGKNISVASCN 504

Query:   316 KNQVLCATGCDVYYLEVHGSEIKQLAHRALEYEVACLDISPLSNEETSSEPAKAQLAAVG 375
              +QV+ A G  +YYL++H  E++Q++H  +E+EVACLDI+PL +    S P    L A+G
Sbjct:   505 SSQVVVAVGRALYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGLS-P----LCAIG 559

Query:   376 LWTDISARLLSLPSLEEVCKEPLGGEIIPRSILMTCFEGHCYLLVALGDGSMFYFSLDPA 435
             LWTDISAR+L LPS E + KE LGGEIIPRSILMT FE   YLL ALGDG++FYF L+  
Sbjct:   560 LWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLNIE 619

Query:   436 SGRLTDKKKVTLGTQPTVLKTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLRQVNHM 495
             +G L+D+KKVTLGTQPTVL+TFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNL++VN+M
Sbjct:   620 TGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLKEVNYM 679

Query:   496 CSLNAESYPDSLALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTR 555
             C LN++ YPDSLALA +ST T GTIDEIQKLHIRTVPL E+PR+I YQE SQ FGV+++R
Sbjct:   680 CPLNSDGYPDSLALANNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSR 739

Query:   556 IDIQEADG-STPVRPXXXXXXXXXXXXXXXXXXYIKPGSTKQSTANQPADFNMEVEVHNL 614
             I++Q+  G +T +RP                           STA     F  EVEVHNL
Sbjct:   740 IEVQDTSGGTTALRPSASTQALSSSVSSSKLFS--------SSTAPHETSFGEEVEVHNL 791

Query:   615 LIIDQNTFE----RNFTSST-DLNLVVAK-----NNRIEIHT--VTPEGLRPVKEIFLYG 662
             LIIDQ+TFE      F  +   L+LV  K     N    + T  V PE   P K+    G
Sbjct:   792 LIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEP-KQ----G 846

Query:   663 KIAVMKFFRGPTD---KKDLLFIITQRTDLN--LVVAKNNRIEIHTVTPE 707
             +I V ++  G      +K++   +    + N  L+ + N+ + ++  T E
Sbjct:   847 RIVVFQYSDGKLQTVAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTTE 896

 Score = 961 (343.3 bits), Expect = 3.9e-192, Sum P(2) = 3.9e-192
 Identities = 181/284 (63%), Positives = 227/284 (79%)

Query:   684 TQRTDLNLVVAKNNRIEIHTVTPEGLRPVKEIFLYGKIAVMKFFRGPTDKKDLLFIITQR 743
             T   DLNL++AKN R+EI+ VT EGLRPVKE+ +YGKIAVM+ FR   + KDLLFI+T +
Sbjct:    24 TSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGKIAVMELFRPKGESKDLLFILTAK 83

Query:   744 YNAMILECRGDIDNLEILTKAHGNVSDRIGKPSENGIIAIIDPEARVIGLRLYNGLFKII 803
             YNA ILE +   ++++I+T+AHGNV DRIG+PSE GII IIDPE R+IGLRLY+GLFK+I
Sbjct:    84 YNACILEYKQSGESIDIITRAHGNVQDRIGRPSETGIIGIIDPECRMIGLRLYDGLFKVI 143

Query:   804 PLEKDNFELKASSIRMEELEIQDVQFLHGCQNPTIICIHQDVNGRHVKTHEISLKEKEFT 863
             PL++DN ELKA +IR+EEL + DV+FL+GCQ PTI  ++QD  GRHVKT+E+SL+EKEF 
Sbjct:   144 PLDRDNKELKAFNIRLEELHVIDVKFLYGCQAPTICFVYQDPQGRHVKTYEVSLREKEFN 203

Query:   864 KTPWKQDNIEMEASLVIPVPEPLGGAIIIGQESILYHSGKSYVAVAPQIIKSSTIVCYAK 923
             K PWKQ+N+E EAS+VI VPEP GGAIIIGQESI YH+G  Y+A+AP IIK STIVC+ +
Sbjct:   204 KGPWKQENVEAEASMVIAVPEPFGGAIIIGQESITYHNGDKYLAIAPPIIKQSTIVCHNR 263

Query:   924 VDANGERYLLGDLAGRLFXXXXXXXXXXDGTFSVKEPKVELLGE 967
             VD NG RYLLGD+ GRLF          DGT ++K+ +VELLGE
Sbjct:   264 VDPNGSRYLLGDMEGRLFMLLLEKEEQMDGTVTLKDLRVELLGE 307

 Score = 923 (330.0 bits), Expect = 3.9e-192, Sum P(2) = 3.9e-192
 Identities = 173/240 (72%), Positives = 205/240 (85%)

Query:   977 SSLSYIKPGSTKQSTANQPADFNMEVEVHNLLIIDQNTFEILHAHQLFPGEYALSLISSK 1036
             SS+S  K  S+  STA     F  EVEVHNLLIIDQ+TFE+LHAHQ    EYALSL+S K
Sbjct:   763 SSVSSSKLFSS--STAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCK 820

Query:  1037 FGEDPNTYFVLGTAVVHPEENEPKQGRIIIFHYDDGKLQQIAEKEIKGACYSMCEFNGKL 1096
              G+DPNTYF++GTA+V+PEE EPKQGRI++F Y DGKLQ +AEKE+KGA YSM EFNGKL
Sbjct:   821 LGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEFNGKL 880

Query:  1097 LASINSTVRLFEWTNEKELRLECSHFNNIIALFLKVKGDFILVGDLMRSLTLLQYKTMEG 1156
             LASINSTVRL+EWT EKELR EC+H+NNI+AL+LK KGDFILVGDLMRS+ LL YK MEG
Sbjct:   881 LASINSTVRLYEWTTEKELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEG 940

Query:  1157 SFEEISRDYNPNWMTSIEILDDELFLGAENSYNLFICQKDSAATSDEDRTHLQEVGTVHL 1216
             +FEEI+RD+NPNWM+++EILDD+ FLGAEN++NLF+CQKDSAAT+DE+R HLQEVG  HL
Sbjct:   941 NFEEIARDFNPNWMSAVEILDDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFHL 1000

 Score = 210 (79.0 bits), Expect = 8.9e-113, Sum P(2) = 8.9e-113
 Identities = 42/81 (51%), Positives = 59/81 (72%)

Query:   625 NFTSSTDLNLVVAKNNRIEIHTVTPEGLRPVKEIFLYGKIAVMKFFRGPTDKKDLLFIIT 684
             +FTS+ DLNL++AKN R+EI+ VT EGLRPVKE+ +YGKIAVM+ FR   + KDLLFI+T
Sbjct:    22 HFTSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGKIAVMELFRPKGESKDLLFILT 81

Query:   685 QRTDLNLVVAKNNRIEIHTVT 705
              + +  ++  K +   I  +T
Sbjct:    82 AKYNACILEYKQSGESIDIIT 102

 Score = 209 (78.6 bits), Expect = 1.1e-112, Sum P(2) = 1.1e-112
 Identities = 45/68 (66%), Positives = 49/68 (72%)

Query:     1 EGSLRIIRNGIGIEEHACIDLPGIKGIWALSIGSPKNLDNTLVLSFVGHTRVLTLSGAEW 60
             EGSLRIIRNGIGI EHA IDLPGIKG+W L     +  D+TLVLSFVG TRVL L+G E 
Sbjct:   384 EGSLRIIRNGIGIHEHASIDLPGIKGLWPLRSDPNRETDDTLVLSFVGQTRVLMLNGEEV 443

Query:    61 GFHLLRGF 68
                 L GF
Sbjct:   444 EETELMGF 451

 Score = 43 (20.2 bits), Expect = 3.8e-95, Sum P(2) = 3.8e-95
 Identities = 11/26 (42%), Positives = 13/26 (50%)

Query:   396 EPLGGEIIPRSILMTCFEGHCYLLVA 421
             EP GG II     +T   G  YL +A
Sbjct:   224 EPFGGAIIIGQESITYHNGDKYLAIA 249


>UNIPROTKB|F1RIE2 [details] [associations]
            symbol:DDB1 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0043161 "proteasomal ubiquitin-dependent protein
            catabolic process" evidence=IEA] [GO:0042787 "protein
            ubiquitination involved in ubiquitin-dependent protein catabolic
            process" evidence=IEA] [GO:0031465 "Cul4B-RING ubiquitin ligase
            complex" evidence=IEA] [GO:0031464 "Cul4A-RING ubiquitin ligase
            complex" evidence=IEA] [GO:0016055 "Wnt receptor signaling pathway"
            evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0000075
            "cell cycle checkpoint" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR004871 InterPro:IPR015943 Pfam:PF03178 GO:GO:0005634
            GO:GO:0005737 GO:GO:0043161 GO:GO:0016055 Gene3D:2.130.10.10
            GO:GO:0003676 GO:GO:0042787 GO:GO:0000075 GO:GO:0031464
            GO:GO:0031465 KO:K10610 OMA:CALGDGS GeneTree:ENSGT00530000063396
            EMBL:CU462918 RefSeq:XP_003122699.1 Ensembl:ENSSSCT00000014314
            GeneID:100522239 KEGG:ssc:100522239 Uniprot:F1RIE2
        Length = 1140

 Score = 1729 (613.7 bits), Expect = 4.5e-178, P = 4.5e-178
 Identities = 370/650 (56%), Positives = 451/650 (69%)

Query:    76 NGWSERYLLGDLAGRLFXXXXXXXXXXDGTFSVKEPKVELLGEISIPECLTYLDNGVVFV 135
             NG   RYLLGD+ GRLF          DGT ++K+ +VELLGE SI ECLTYLDNGVVFV
Sbjct:   267 NG--SRYLLGDMEGRLFMLLLEKEEQMDGTVTLKDLRVELLGETSIAECLTYLDNGVVFV 324

Query:   136 GSRLGDSQLVKLNRSPDENGTYVSVMESFTNLAPIIDMVVVDLERQGQGQLVTCSGGFKE 195
             GSRLGDSQLVKLN   +E G+YV  ME+FTNL PI+DM VVDLERQGQGQLVTCSG FKE
Sbjct:   325 GSRLGDSQLVKLNVDSNEQGSYVVAMETFTNLGPIVDMCVVDLERQGQGQLVTCSGAFKE 384

Query:   196 GSLRIIRNGIGIEEHACIDLPGIKGIWALSIGSPKNLDNTLVLSFVGHTRVLTLSGAEVE 255
             GSLRIIRNGIGI EHA IDLPGIKG+W L     +  D+TLVLSFVG TRVL L+G EVE
Sbjct:   385 GSLRIIRNGIGIHEHASIDLPGIKGLWPLRSDPNRETDDTLVLSFVGQTRVLMLNGEEVE 444

Query:   256 ETEMGGFTSDQQTFYCGNVDPRTVLQVTPSAAILISTESKARVSSWEPPNGKSISVVSCN 315
             ETE+ GF  DQQTF+CGNV  + ++Q+T ++  L+S E KA VS W+ P GK+ISV SCN
Sbjct:   445 ETELMGFVDDQQTFFCGNVAHQQLIQITSASVRLVSQEPKALVSEWKEPQGKNISVASCN 504

Query:   316 KNQVLCATGCDVYYLEVHGSEIKQLAHRALEYEVACLDISPLSNEETSSEPAKAQLAAVG 375
              NQV+ A G  +YYL++H  E++Q++H  +E+EVACLDI+PL +    S P    L A+G
Sbjct:   505 SNQVVVAVGRALYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGLS-P----LCAIG 559

Query:   376 LWTDISARLLSLPSLEEVCKEPLGGEIIPRSILMTCFEGHCYLLVALGDGSMFYFSLDPA 435
             LWTDISAR+  LPS E + KE LGGEIIPRSILMT FE   YLL ALGDG++FYF L+  
Sbjct:   560 LWTDISARISKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLNIE 619

Query:   436 SGRLTDKKKVTLGTQPTVLKTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLRQVNHM 495
             +G L+D+KKVTLGTQPTVL+TFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNL++VN+M
Sbjct:   620 TGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLKEVNYM 679

Query:   496 CSLNAESYPDSLALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTR 555
             C LN++ YPDSLALA +ST T GTIDEIQKLHIRTVPL E+PR+I YQE SQ FGV+++R
Sbjct:   680 CPLNSDGYPDSLALANNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSR 739

Query:   556 IDIQEADG-STPVRPXXXXXXXXXXXXXXXXXXYIKPGSTKQSTANQPADFNMEVEVHNL 614
             I++Q+  G +T +RP                           STA     F  EVEVHNL
Sbjct:   740 IEVQDTSGGTTALRPSASTQALSSSVSSSKLFS--------SSTAPHETSFGEEVEVHNL 791

Query:   615 LIIDQNTFE----RNFTSST-DLNLVVAK-----NNRIEIHT--VTPEGLRPVKEIFLYG 662
             LIIDQ+TFE      F  +   L+LV  K     N    + T  V PE   P K+    G
Sbjct:   792 LIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEP-KQ----G 846

Query:   663 KIAVMKFFRGPTD---KKDLLFIITQRTDLN--LVVAKNNRIEIHTVTPE 707
             +I V ++  G      +K++   +    + N  L+ + N+ + ++  T E
Sbjct:   847 RIVVFQYSDGKLQTVAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTTE 896

 Score = 961 (343.3 bits), Expect = 3.9e-192, Sum P(2) = 3.9e-192
 Identities = 181/284 (63%), Positives = 227/284 (79%)

Query:   684 TQRTDLNLVVAKNNRIEIHTVTPEGLRPVKEIFLYGKIAVMKFFRGPTDKKDLLFIITQR 743
             T   DLNL++AKN R+EI+ VT EGLRPVKE+ +YGKIAVM+ FR   + KDLLFI+T +
Sbjct:    24 TSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGKIAVMELFRPKGESKDLLFILTAK 83

Query:   744 YNAMILECRGDIDNLEILTKAHGNVSDRIGKPSENGIIAIIDPEARVIGLRLYNGLFKII 803
             YNA ILE +   ++++I+T+AHGNV DRIG+PSE GII IIDPE R+IGLRLY+GLFK+I
Sbjct:    84 YNACILEYKQSGESIDIITRAHGNVQDRIGRPSETGIIGIIDPECRMIGLRLYDGLFKVI 143

Query:   804 PLEKDNFELKASSIRMEELEIQDVQFLHGCQNPTIICIHQDVNGRHVKTHEISLKEKEFT 863
             PL++DN ELKA +IR+EEL + DV+FL+GCQ PTI  ++QD  GRHVKT+E+SL+EKEF 
Sbjct:   144 PLDRDNKELKAFNIRLEELHVIDVKFLYGCQAPTICFVYQDPQGRHVKTYEVSLREKEFN 203

Query:   864 KTPWKQDNIEMEASLVIPVPEPLGGAIIIGQESILYHSGKSYVAVAPQIIKSSTIVCYAK 923
             K PWKQ+N+E EAS+VI VPEP GGAIIIGQESI YH+G  Y+A+AP IIK STIVC+ +
Sbjct:   204 KGPWKQENVEAEASMVIAVPEPFGGAIIIGQESITYHNGDKYLAIAPPIIKQSTIVCHNR 263

Query:   924 VDANGERYLLGDLAGRLFXXXXXXXXXXDGTFSVKEPKVELLGE 967
             VD NG RYLLGD+ GRLF          DGT ++K+ +VELLGE
Sbjct:   264 VDPNGSRYLLGDMEGRLFMLLLEKEEQMDGTVTLKDLRVELLGE 307

 Score = 923 (330.0 bits), Expect = 3.9e-192, Sum P(2) = 3.9e-192
 Identities = 173/240 (72%), Positives = 205/240 (85%)

Query:   977 SSLSYIKPGSTKQSTANQPADFNMEVEVHNLLIIDQNTFEILHAHQLFPGEYALSLISSK 1036
             SS+S  K  S+  STA     F  EVEVHNLLIIDQ+TFE+LHAHQ    EYALSL+S K
Sbjct:   763 SSVSSSKLFSS--STAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCK 820

Query:  1037 FGEDPNTYFVLGTAVVHPEENEPKQGRIIIFHYDDGKLQQIAEKEIKGACYSMCEFNGKL 1096
              G+DPNTYF++GTA+V+PEE EPKQGRI++F Y DGKLQ +AEKE+KGA YSM EFNGKL
Sbjct:   821 LGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEFNGKL 880

Query:  1097 LASINSTVRLFEWTNEKELRLECSHFNNIIALFLKVKGDFILVGDLMRSLTLLQYKTMEG 1156
             LASINSTVRL+EWT EKELR EC+H+NNI+AL+LK KGDFILVGDLMRS+ LL YK MEG
Sbjct:   881 LASINSTVRLYEWTTEKELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEG 940

Query:  1157 SFEEISRDYNPNWMTSIEILDDELFLGAENSYNLFICQKDSAATSDEDRTHLQEVGTVHL 1216
             +FEEI+RD+NPNWM+++EILDD+ FLGAEN++NLF+CQKDSAAT+DE+R HLQEVG  HL
Sbjct:   941 NFEEIARDFNPNWMSAVEILDDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFHL 1000

 Score = 210 (79.0 bits), Expect = 8.9e-113, Sum P(2) = 8.9e-113
 Identities = 42/81 (51%), Positives = 59/81 (72%)

Query:   625 NFTSSTDLNLVVAKNNRIEIHTVTPEGLRPVKEIFLYGKIAVMKFFRGPTDKKDLLFIIT 684
             +FTS+ DLNL++AKN R+EI+ VT EGLRPVKE+ +YGKIAVM+ FR   + KDLLFI+T
Sbjct:    22 HFTSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGKIAVMELFRPKGESKDLLFILT 81

Query:   685 QRTDLNLVVAKNNRIEIHTVT 705
              + +  ++  K +   I  +T
Sbjct:    82 AKYNACILEYKQSGESIDIIT 102

 Score = 209 (78.6 bits), Expect = 1.1e-112, Sum P(2) = 1.1e-112
 Identities = 45/68 (66%), Positives = 49/68 (72%)

Query:     1 EGSLRIIRNGIGIEEHACIDLPGIKGIWALSIGSPKNLDNTLVLSFVGHTRVLTLSGAEW 60
             EGSLRIIRNGIGI EHA IDLPGIKG+W L     +  D+TLVLSFVG TRVL L+G E 
Sbjct:   384 EGSLRIIRNGIGIHEHASIDLPGIKGLWPLRSDPNRETDDTLVLSFVGQTRVLMLNGEEV 443

Query:    61 GFHLLRGF 68
                 L GF
Sbjct:   444 EETELMGF 451

 Score = 43 (20.2 bits), Expect = 3.8e-95, Sum P(2) = 3.8e-95
 Identities = 11/26 (42%), Positives = 13/26 (50%)

Query:   396 EPLGGEIIPRSILMTCFEGHCYLLVA 421
             EP GG II     +T   G  YL +A
Sbjct:   224 EPFGGAIIIGQESITYHNGDKYLAIA 249


>UNIPROTKB|A1A4K3 [details] [associations]
            symbol:DDB1 "DNA damage-binding protein 1" species:9913
            "Bos taurus" [GO:0080008 "Cul4-RING ubiquitin ligase complex"
            evidence=ISS] [GO:0031464 "Cul4A-RING ubiquitin ligase complex"
            evidence=ISS] [GO:0043161 "proteasomal ubiquitin-dependent protein
            catabolic process" evidence=ISS] [GO:0031465 "Cul4B-RING ubiquitin
            ligase complex" evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS]
            [GO:0005634 "nucleus" evidence=ISS] [GO:0042787 "protein
            ubiquitination involved in ubiquitin-dependent protein catabolic
            process" evidence=IEA] [GO:0016055 "Wnt receptor signaling pathway"
            evidence=IEA] [GO:0000075 "cell cycle checkpoint" evidence=IEA]
            [GO:0006281 "DNA repair" evidence=IEA] [GO:0003677 "DNA binding"
            evidence=IEA] InterPro:IPR004871 InterPro:IPR015943 Pfam:PF03178
            UniPathway:UPA00143 GO:GO:0005634 GO:GO:0005737 GO:GO:0043161
            GO:GO:0016055 Gene3D:2.130.10.10 GO:GO:0003677 GO:GO:0006281
            GO:GO:0042787 GO:GO:0000075 GO:GO:0031464 GO:GO:0031465
            eggNOG:NOG247734 HOGENOM:HOG000007241 KO:K10610 OMA:CALGDGS
            EMBL:BC126629 IPI:IPI00713891 RefSeq:NP_001073731.1
            UniGene:Bt.62917 STRING:A1A4K3 PRIDE:A1A4K3
            Ensembl:ENSBTAT00000028740 GeneID:511951 KEGG:bta:511951 CTD:1642
            GeneTree:ENSGT00530000063396 HOVERGEN:HBG005460 InParanoid:A1A4K3
            OrthoDB:EOG4KPT91 NextBio:20870176 Uniprot:A1A4K3
        Length = 1140

 Score = 1726 (612.6 bits), Expect = 9.3e-178, P = 9.3e-178
 Identities = 369/650 (56%), Positives = 451/650 (69%)

Query:    76 NGWSERYLLGDLAGRLFXXXXXXXXXXDGTFSVKEPKVELLGEISIPECLTYLDNGVVFV 135
             NG   RYLLGD+ GRLF          DGT ++K+ +VELLGE SI ECLTYLDNGVVFV
Sbjct:   267 NG--SRYLLGDMEGRLFMLLLEKEEQMDGTVTLKDLRVELLGETSIAECLTYLDNGVVFV 324

Query:   136 GSRLGDSQLVKLNRSPDENGTYVSVMESFTNLAPIIDMVVVDLERQGQGQLVTCSGGFKE 195
             GSRLGDSQLVKLN   +E G+YV  ME+FTNL PI+DM VVDLERQGQGQLVTCSG FKE
Sbjct:   325 GSRLGDSQLVKLNVDSNEQGSYVVAMETFTNLGPIVDMCVVDLERQGQGQLVTCSGAFKE 384

Query:   196 GSLRIIRNGIGIEEHACIDLPGIKGIWALSIGSPKNLDNTLVLSFVGHTRVLTLSGAEVE 255
             GSLRIIRNGIGI EHA IDLPGIKG+W L     +  D+TLVLSFVG TRVL L+G EVE
Sbjct:   385 GSLRIIRNGIGIHEHASIDLPGIKGLWPLRSDPNRETDDTLVLSFVGQTRVLMLNGEEVE 444

Query:   256 ETEMGGFTSDQQTFYCGNVDPRTVLQVTPSAAILISTESKARVSSWEPPNGKSISVVSCN 315
             ETE+ GF  DQQTF+CGNV  + ++Q+T ++  L+S E KA VS W+ P GK+ISV SCN
Sbjct:   445 ETELMGFVDDQQTFFCGNVAHQQLIQITSASVRLVSQEPKALVSEWKEPQGKNISVASCN 504

Query:   316 KNQVLCATGCDVYYLEVHGSEIKQLAHRALEYEVACLDISPLSNEETSSEPAKAQLAAVG 375
              +QV+ A G  +YYL++H  E++Q++H  +E+EVACLDI+PL +    S P    L A+G
Sbjct:   505 SSQVVVAVGRALYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGMS-P----LCAIG 559

Query:   376 LWTDISARLLSLPSLEEVCKEPLGGEIIPRSILMTCFEGHCYLLVALGDGSMFYFSLDPA 435
             LWTDISAR+  LPS E + KE LGGEIIPRSILMT FE   YLL ALGDG++FYF L+  
Sbjct:   560 LWTDISARIAKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLNIE 619

Query:   436 SGRLTDKKKVTLGTQPTVLKTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLRQVNHM 495
             +G L+D+KKVTLGTQPTVL+TFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNL++VN+M
Sbjct:   620 TGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLKEVNYM 679

Query:   496 CSLNAESYPDSLALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTR 555
             C LN++ YPDSLALA +ST T GTIDEIQKLHIRTVPL E+PR+I YQE SQ FGV+++R
Sbjct:   680 CPLNSDGYPDSLALANNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSR 739

Query:   556 IDIQEADG-STPVRPXXXXXXXXXXXXXXXXXXYIKPGSTKQSTANQPADFNMEVEVHNL 614
             I++Q+  G +T +RP                           STA     F  EVEVHNL
Sbjct:   740 IEVQDTSGGTTALRPSASTQALSSSVSSSKLFS--------SSTAPHETSFGEEVEVHNL 791

Query:   615 LIIDQNTFE----RNFTSST-DLNLVVAK-----NNRIEIHT--VTPEGLRPVKEIFLYG 662
             LIIDQ+TFE      F  +   L+LV  K     N    + T  V PE   P K+    G
Sbjct:   792 LIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEP-KQ----G 846

Query:   663 KIAVMKFFRGPTD---KKDLLFIITQRTDLN--LVVAKNNRIEIHTVTPE 707
             +I V ++  G      +K++   +    + N  L+ + N+ + ++  T E
Sbjct:   847 RIVVFQYSDGKLQTVAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTTE 896

 Score = 961 (343.3 bits), Expect = 3.9e-192, Sum P(2) = 3.9e-192
 Identities = 181/284 (63%), Positives = 227/284 (79%)

Query:   684 TQRTDLNLVVAKNNRIEIHTVTPEGLRPVKEIFLYGKIAVMKFFRGPTDKKDLLFIITQR 743
             T   DLNL++AKN R+EI+ VT EGLRPVKE+ +YGKIAVM+ FR   + KDLLFI+T +
Sbjct:    24 TSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGKIAVMELFRPKGESKDLLFILTAK 83

Query:   744 YNAMILECRGDIDNLEILTKAHGNVSDRIGKPSENGIIAIIDPEARVIGLRLYNGLFKII 803
             YNA ILE +   ++++I+T+AHGNV DRIG+PSE GII IIDPE R+IGLRLY+GLFK+I
Sbjct:    84 YNACILEYKQSGESIDIITRAHGNVQDRIGRPSETGIIGIIDPECRMIGLRLYDGLFKVI 143

Query:   804 PLEKDNFELKASSIRMEELEIQDVQFLHGCQNPTIICIHQDVNGRHVKTHEISLKEKEFT 863
             PL++DN ELKA +IR+EEL + DV+FL+GCQ PTI  ++QD  GRHVKT+E+SL+EKEF 
Sbjct:   144 PLDRDNKELKAFNIRLEELHVIDVKFLYGCQAPTICFVYQDPQGRHVKTYEVSLREKEFN 203

Query:   864 KTPWKQDNIEMEASLVIPVPEPLGGAIIIGQESILYHSGKSYVAVAPQIIKSSTIVCYAK 923
             K PWKQ+N+E EAS+VI VPEP GGAIIIGQESI YH+G  Y+A+AP IIK STIVC+ +
Sbjct:   204 KGPWKQENVEAEASMVIAVPEPFGGAIIIGQESITYHNGDKYLAIAPPIIKQSTIVCHNR 263

Query:   924 VDANGERYLLGDLAGRLFXXXXXXXXXXDGTFSVKEPKVELLGE 967
             VD NG RYLLGD+ GRLF          DGT ++K+ +VELLGE
Sbjct:   264 VDPNGSRYLLGDMEGRLFMLLLEKEEQMDGTVTLKDLRVELLGE 307

 Score = 923 (330.0 bits), Expect = 3.9e-192, Sum P(2) = 3.9e-192
 Identities = 173/240 (72%), Positives = 205/240 (85%)

Query:   977 SSLSYIKPGSTKQSTANQPADFNMEVEVHNLLIIDQNTFEILHAHQLFPGEYALSLISSK 1036
             SS+S  K  S+  STA     F  EVEVHNLLIIDQ+TFE+LHAHQ    EYALSL+S K
Sbjct:   763 SSVSSSKLFSS--STAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCK 820

Query:  1037 FGEDPNTYFVLGTAVVHPEENEPKQGRIIIFHYDDGKLQQIAEKEIKGACYSMCEFNGKL 1096
              G+DPNTYF++GTA+V+PEE EPKQGRI++F Y DGKLQ +AEKE+KGA YSM EFNGKL
Sbjct:   821 LGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEFNGKL 880

Query:  1097 LASINSTVRLFEWTNEKELRLECSHFNNIIALFLKVKGDFILVGDLMRSLTLLQYKTMEG 1156
             LASINSTVRL+EWT EKELR EC+H+NNI+AL+LK KGDFILVGDLMRS+ LL YK MEG
Sbjct:   881 LASINSTVRLYEWTTEKELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEG 940

Query:  1157 SFEEISRDYNPNWMTSIEILDDELFLGAENSYNLFICQKDSAATSDEDRTHLQEVGTVHL 1216
             +FEEI+RD+NPNWM+++EILDD+ FLGAEN++NLF+CQKDSAAT+DE+R HLQEVG  HL
Sbjct:   941 NFEEIARDFNPNWMSAVEILDDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFHL 1000

 Score = 210 (79.0 bits), Expect = 8.9e-113, Sum P(2) = 8.9e-113
 Identities = 42/81 (51%), Positives = 59/81 (72%)

Query:   625 NFTSSTDLNLVVAKNNRIEIHTVTPEGLRPVKEIFLYGKIAVMKFFRGPTDKKDLLFIIT 684
             +FTS+ DLNL++AKN R+EI+ VT EGLRPVKE+ +YGKIAVM+ FR   + KDLLFI+T
Sbjct:    22 HFTSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGKIAVMELFRPKGESKDLLFILT 81

Query:   685 QRTDLNLVVAKNNRIEIHTVT 705
              + +  ++  K +   I  +T
Sbjct:    82 AKYNACILEYKQSGESIDIIT 102

 Score = 209 (78.6 bits), Expect = 1.1e-112, Sum P(2) = 1.1e-112
 Identities = 45/68 (66%), Positives = 49/68 (72%)

Query:     1 EGSLRIIRNGIGIEEHACIDLPGIKGIWALSIGSPKNLDNTLVLSFVGHTRVLTLSGAEW 60
             EGSLRIIRNGIGI EHA IDLPGIKG+W L     +  D+TLVLSFVG TRVL L+G E 
Sbjct:   384 EGSLRIIRNGIGIHEHASIDLPGIKGLWPLRSDPNRETDDTLVLSFVGQTRVLMLNGEEV 443

Query:    61 GFHLLRGF 68
                 L GF
Sbjct:   444 EETELMGF 451

 Score = 43 (20.2 bits), Expect = 3.8e-95, Sum P(2) = 3.8e-95
 Identities = 11/26 (42%), Positives = 13/26 (50%)

Query:   396 EPLGGEIIPRSILMTCFEGHCYLLVA 421
             EP GG II     +T   G  YL +A
Sbjct:   224 EPFGGAIIIGQESITYHNGDKYLAIA 249


>UNIPROTKB|F5GY55 [details] [associations]
            symbol:DDB1 "Uncharacterized protein" species:9606 "Homo
            sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] InterPro:IPR004871
            InterPro:IPR015943 Pfam:PF03178 GO:GO:0005634 Gene3D:2.130.10.10
            GO:GO:0003676 EMBL:AP003108 HGNC:HGNC:2717 ChiTaRS:DDB1
            EMBL:AP003037 IPI:IPI00977083 SMR:F5GY55 Ensembl:ENST00000540166
            Uniprot:F5GY55
        Length = 1092

 Score = 1724 (611.9 bits), Expect = 1.5e-177, P = 1.5e-177
 Identities = 369/650 (56%), Positives = 451/650 (69%)

Query:    76 NGWSERYLLGDLAGRLFXXXXXXXXXXDGTFSVKEPKVELLGEISIPECLTYLDNGVVFV 135
             NG   RYLLGD+ GRLF          DGT ++K+ +VELLGE SI ECLTYLDNGVVFV
Sbjct:   267 NG--SRYLLGDMEGRLFMLLLEKEEQMDGTVTLKDLRVELLGETSIAECLTYLDNGVVFV 324

Query:   136 GSRLGDSQLVKLNRSPDENGTYVSVMESFTNLAPIIDMVVVDLERQGQGQLVTCSGGFKE 195
             GSRLGDSQLVKLN   +E G+YV  ME+FTNL PI+DM VVDLERQGQGQLVTCSG FKE
Sbjct:   325 GSRLGDSQLVKLNVDSNEQGSYVVAMETFTNLGPIVDMCVVDLERQGQGQLVTCSGAFKE 384

Query:   196 GSLRIIRNGIGIEEHACIDLPGIKGIWALSIGSPKNLDNTLVLSFVGHTRVLTLSGAEVE 255
             GSLRIIRNGIGI EHA IDLPGIKG+W L     +  D+TLVLSFVG TRVL L+G EVE
Sbjct:   385 GSLRIIRNGIGIHEHASIDLPGIKGLWPLRSDPNRETDDTLVLSFVGQTRVLMLNGEEVE 444

Query:   256 ETEMGGFTSDQQTFYCGNVDPRTVLQVTPSAAILISTESKARVSSWEPPNGKSISVVSCN 315
             ETE+ GF  DQQTF+CGNV  + ++Q+T ++  L+S E KA VS W+ P  K+ISV SCN
Sbjct:   445 ETELMGFVDDQQTFFCGNVAHQQLIQITSASVRLVSQEPKALVSEWKEPQAKNISVASCN 504

Query:   316 KNQVLCATGCDVYYLEVHGSEIKQLAHRALEYEVACLDISPLSNEETSSEPAKAQLAAVG 375
              +QV+ A G  +YYL++H  E++Q++H  +E+EVACLDI+PL +    S P    L A+G
Sbjct:   505 SSQVVVAVGRALYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGLS-P----LCAIG 559

Query:   376 LWTDISARLLSLPSLEEVCKEPLGGEIIPRSILMTCFEGHCYLLVALGDGSMFYFSLDPA 435
             LWTDISAR+L LPS E + KE LGGEIIPRSILMT FE   YLL ALGDG++FYF L+  
Sbjct:   560 LWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLNIE 619

Query:   436 SGRLTDKKKVTLGTQPTVLKTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLRQVNHM 495
             +G L+D+KKVTLGTQPTVL+TFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNL++VN+M
Sbjct:   620 TGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLKEVNYM 679

Query:   496 CSLNAESYPDSLALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTR 555
             C LN++ YPDSLALA +ST T GTIDEIQKLHIRTVPL E+PR+I YQE SQ FGV+++R
Sbjct:   680 CPLNSDGYPDSLALANNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSR 739

Query:   556 IDIQEADG-STPVRPXXXXXXXXXXXXXXXXXXYIKPGSTKQSTANQPADFNMEVEVHNL 614
             I++Q+  G +T +RP                           STA     F  EVEVHNL
Sbjct:   740 IEVQDTSGGTTALRPSASTQALSSSVSSSKLFS--------SSTAPHETSFGEEVEVHNL 791

Query:   615 LIIDQNTFE----RNFTSST-DLNLVVAK-----NNRIEIHT--VTPEGLRPVKEIFLYG 662
             LIIDQ+TFE      F  +   L+LV  K     N    + T  V PE   P K+    G
Sbjct:   792 LIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEP-KQ----G 846

Query:   663 KIAVMKFFRGPTD---KKDLLFIITQRTDLN--LVVAKNNRIEIHTVTPE 707
             +I V ++  G      +K++   +    + N  L+ + N+ + ++  T E
Sbjct:   847 RIVVFQYSDGKLQTVAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTTE 896

 Score = 961 (343.3 bits), Expect = 3.9e-192, Sum P(2) = 3.9e-192
 Identities = 181/284 (63%), Positives = 227/284 (79%)

Query:   684 TQRTDLNLVVAKNNRIEIHTVTPEGLRPVKEIFLYGKIAVMKFFRGPTDKKDLLFIITQR 743
             T   DLNL++AKN R+EI+ VT EGLRPVKE+ +YGKIAVM+ FR   + KDLLFI+T +
Sbjct:    24 TSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGKIAVMELFRPKGESKDLLFILTAK 83

Query:   744 YNAMILECRGDIDNLEILTKAHGNVSDRIGKPSENGIIAIIDPEARVIGLRLYNGLFKII 803
             YNA ILE +   ++++I+T+AHGNV DRIG+PSE GII IIDPE R+IGLRLY+GLFK+I
Sbjct:    84 YNACILEYKQSGESIDIITRAHGNVQDRIGRPSETGIIGIIDPECRMIGLRLYDGLFKVI 143

Query:   804 PLEKDNFELKASSIRMEELEIQDVQFLHGCQNPTIICIHQDVNGRHVKTHEISLKEKEFT 863
             PL++DN ELKA +IR+EEL + DV+FL+GCQ PTI  ++QD  GRHVKT+E+SL+EKEF 
Sbjct:   144 PLDRDNKELKAFNIRLEELHVIDVKFLYGCQAPTICFVYQDPQGRHVKTYEVSLREKEFN 203

Query:   864 KTPWKQDNIEMEASLVIPVPEPLGGAIIIGQESILYHSGKSYVAVAPQIIKSSTIVCYAK 923
             K PWKQ+N+E EAS+VI VPEP GGAIIIGQESI YH+G  Y+A+AP IIK STIVC+ +
Sbjct:   204 KGPWKQENVEAEASMVIAVPEPFGGAIIIGQESITYHNGDKYLAIAPPIIKQSTIVCHNR 263

Query:   924 VDANGERYLLGDLAGRLFXXXXXXXXXXDGTFSVKEPKVELLGE 967
             VD NG RYLLGD+ GRLF          DGT ++K+ +VELLGE
Sbjct:   264 VDPNGSRYLLGDMEGRLFMLLLEKEEQMDGTVTLKDLRVELLGE 307

 Score = 923 (330.0 bits), Expect = 3.9e-192, Sum P(2) = 3.9e-192
 Identities = 173/240 (72%), Positives = 205/240 (85%)

Query:   977 SSLSYIKPGSTKQSTANQPADFNMEVEVHNLLIIDQNTFEILHAHQLFPGEYALSLISSK 1036
             SS+S  K  S+  STA     F  EVEVHNLLIIDQ+TFE+LHAHQ    EYALSL+S K
Sbjct:   763 SSVSSSKLFSS--STAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCK 820

Query:  1037 FGEDPNTYFVLGTAVVHPEENEPKQGRIIIFHYDDGKLQQIAEKEIKGACYSMCEFNGKL 1096
              G+DPNTYF++GTA+V+PEE EPKQGRI++F Y DGKLQ +AEKE+KGA YSM EFNGKL
Sbjct:   821 LGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEFNGKL 880

Query:  1097 LASINSTVRLFEWTNEKELRLECSHFNNIIALFLKVKGDFILVGDLMRSLTLLQYKTMEG 1156
             LASINSTVRL+EWT EKELR EC+H+NNI+AL+LK KGDFILVGDLMRS+ LL YK MEG
Sbjct:   881 LASINSTVRLYEWTTEKELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEG 940

Query:  1157 SFEEISRDYNPNWMTSIEILDDELFLGAENSYNLFICQKDSAATSDEDRTHLQEVGTVHL 1216
             +FEEI+RD+NPNWM+++EILDD+ FLGAEN++NLF+CQKDSAAT+DE+R HLQEVG  HL
Sbjct:   941 NFEEIARDFNPNWMSAVEILDDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFHL 1000

 Score = 210 (79.0 bits), Expect = 8.9e-113, Sum P(2) = 8.9e-113
 Identities = 42/81 (51%), Positives = 59/81 (72%)

Query:   625 NFTSSTDLNLVVAKNNRIEIHTVTPEGLRPVKEIFLYGKIAVMKFFRGPTDKKDLLFIIT 684
             +FTS+ DLNL++AKN R+EI+ VT EGLRPVKE+ +YGKIAVM+ FR   + KDLLFI+T
Sbjct:    22 HFTSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGKIAVMELFRPKGESKDLLFILT 81

Query:   685 QRTDLNLVVAKNNRIEIHTVT 705
              + +  ++  K +   I  +T
Sbjct:    82 AKYNACILEYKQSGESIDIIT 102

 Score = 209 (78.6 bits), Expect = 1.1e-112, Sum P(2) = 1.1e-112
 Identities = 45/68 (66%), Positives = 49/68 (72%)

Query:     1 EGSLRIIRNGIGIEEHACIDLPGIKGIWALSIGSPKNLDNTLVLSFVGHTRVLTLSGAEW 60
             EGSLRIIRNGIGI EHA IDLPGIKG+W L     +  D+TLVLSFVG TRVL L+G E 
Sbjct:   384 EGSLRIIRNGIGIHEHASIDLPGIKGLWPLRSDPNRETDDTLVLSFVGQTRVLMLNGEEV 443

Query:    61 GFHLLRGF 68
                 L GF
Sbjct:   444 EETELMGF 451

 Score = 43 (20.2 bits), Expect = 3.8e-95, Sum P(2) = 3.8e-95
 Identities = 11/26 (42%), Positives = 13/26 (50%)

Query:   396 EPLGGEIIPRSILMTCFEGHCYLLVA 421
             EP GG II     +T   G  YL +A
Sbjct:   224 EPFGGAIIIGQESITYHNGDKYLAIA 249


>UNIPROTKB|Q16531 [details] [associations]
            symbol:DDB1 "DNA damage-binding protein 1" species:9606
            "Homo sapiens" [GO:0019048 "virus-host interaction" evidence=IEA]
            [GO:0016055 "Wnt receptor signaling pathway" evidence=IEA]
            [GO:0005515 "protein binding" evidence=IPI] [GO:0005737 "cytoplasm"
            evidence=IDA] [GO:0000075 "cell cycle checkpoint" evidence=IMP]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0042787 "protein
            ubiquitination involved in ubiquitin-dependent protein catabolic
            process" evidence=IDA] [GO:0031464 "Cul4A-RING ubiquitin ligase
            complex" evidence=IDA] [GO:0031465 "Cul4B-RING ubiquitin ligase
            complex" evidence=IDA] [GO:0043161 "proteasomal ubiquitin-dependent
            protein catabolic process" evidence=IMP] [GO:0080008 "Cul4-RING
            ubiquitin ligase complex" evidence=IDA] [GO:0003677 "DNA binding"
            evidence=TAS] [GO:0003684 "damaged DNA binding" evidence=TAS]
            [GO:0000718 "nucleotide-excision repair, DNA damage removal"
            evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006281
            "DNA repair" evidence=TAS] [GO:0006289 "nucleotide-excision repair"
            evidence=TAS] Reactome:REACT_216 InterPro:IPR004871
            InterPro:IPR015943 Pfam:PF03178 UniPathway:UPA00143 EMBL:U32986
            GO:GO:0005737 GO:GO:0019048 GO:GO:0005654 GO:GO:0043161
            GO:GO:0016055 Gene3D:2.130.10.10 GO:GO:0003684 EMBL:CH471076
            GO:GO:0042787 GO:GO:0000075 GO:GO:0000718 EMBL:AP003108
            GO:GO:0031464 PDB:2HYE PDB:4A0K PDBsum:2HYE PDBsum:4A0K PDB:4A0L
            PDBsum:4A0L GO:GO:0031465 PDB:3I7P PDBsum:3I7P PDB:3I8C PDBsum:3I8C
            PDB:3I89 PDBsum:3I89 PDB:3I7O PDBsum:3I7O PDB:3I8E PDBsum:3I8E
            eggNOG:NOG247734 HOGENOM:HOG000007241 KO:K10610 OMA:CALGDGS
            CTD:1642 HOVERGEN:HBG005460 OrthoDB:EOG4KPT91 EMBL:U18299
            EMBL:L40326 EMBL:AJ002955 EMBL:AK312436 EMBL:AY960579 EMBL:BC011686
            EMBL:BC050530 EMBL:BC051764 IPI:IPI00293464 PIR:I38908
            RefSeq:NP_001914.3 UniGene:Hs.290758 PDB:2B5L PDB:2B5M PDB:2B5N
            PDB:3E0C PDB:3EI1 PDB:3EI2 PDB:3EI3 PDB:3EI4 PDB:3I7H PDB:3I7K
            PDB:3I7L PDB:3I7N PDB:4A08 PDB:4A09 PDB:4A0A PDB:4A0B PDB:4A11
            PDB:4E54 PDB:4E5Z PDBsum:2B5L PDBsum:2B5M PDBsum:2B5N PDBsum:3E0C
            PDBsum:3EI1 PDBsum:3EI2 PDBsum:3EI3 PDBsum:3EI4 PDBsum:3I7H
            PDBsum:3I7K PDBsum:3I7L PDBsum:3I7N PDBsum:4A08 PDBsum:4A09
            PDBsum:4A0A PDBsum:4A0B PDBsum:4A11 PDBsum:4E54 PDBsum:4E5Z
            ProteinModelPortal:Q16531 SMR:Q16531 DIP:DIP-430N IntAct:Q16531
            MINT:MINT-1134697 STRING:Q16531 PhosphoSite:Q16531 PaxDb:Q16531
            PRIDE:Q16531 Ensembl:ENST00000301764 GeneID:1642 KEGG:hsa:1642
            UCSC:uc001nrc.4 GeneCards:GC11M061066 H-InvDB:HIX0171380
            HGNC:HGNC:2717 HPA:CAB032821 MIM:600045 neXtProt:NX_Q16531
            PharmGKB:PA27187 InParanoid:Q16531 ChiTaRS:DDB1
            EvolutionaryTrace:Q16531 GenomeRNAi:1642 NextBio:6750
            ArrayExpress:Q16531 Bgee:Q16531 CleanEx:HS_DDB1
            Genevestigator:Q16531 GermOnline:ENSG00000167986 Uniprot:Q16531
        Length = 1140

 Score = 1724 (611.9 bits), Expect = 1.5e-177, P = 1.5e-177
 Identities = 369/650 (56%), Positives = 451/650 (69%)

Query:    76 NGWSERYLLGDLAGRLFXXXXXXXXXXDGTFSVKEPKVELLGEISIPECLTYLDNGVVFV 135
             NG   RYLLGD+ GRLF          DGT ++K+ +VELLGE SI ECLTYLDNGVVFV
Sbjct:   267 NG--SRYLLGDMEGRLFMLLLEKEEQMDGTVTLKDLRVELLGETSIAECLTYLDNGVVFV 324

Query:   136 GSRLGDSQLVKLNRSPDENGTYVSVMESFTNLAPIIDMVVVDLERQGQGQLVTCSGGFKE 195
             GSRLGDSQLVKLN   +E G+YV  ME+FTNL PI+DM VVDLERQGQGQLVTCSG FKE
Sbjct:   325 GSRLGDSQLVKLNVDSNEQGSYVVAMETFTNLGPIVDMCVVDLERQGQGQLVTCSGAFKE 384

Query:   196 GSLRIIRNGIGIEEHACIDLPGIKGIWALSIGSPKNLDNTLVLSFVGHTRVLTLSGAEVE 255
             GSLRIIRNGIGI EHA IDLPGIKG+W L     +  D+TLVLSFVG TRVL L+G EVE
Sbjct:   385 GSLRIIRNGIGIHEHASIDLPGIKGLWPLRSDPNRETDDTLVLSFVGQTRVLMLNGEEVE 444

Query:   256 ETEMGGFTSDQQTFYCGNVDPRTVLQVTPSAAILISTESKARVSSWEPPNGKSISVVSCN 315
             ETE+ GF  DQQTF+CGNV  + ++Q+T ++  L+S E KA VS W+ P  K+ISV SCN
Sbjct:   445 ETELMGFVDDQQTFFCGNVAHQQLIQITSASVRLVSQEPKALVSEWKEPQAKNISVASCN 504

Query:   316 KNQVLCATGCDVYYLEVHGSEIKQLAHRALEYEVACLDISPLSNEETSSEPAKAQLAAVG 375
              +QV+ A G  +YYL++H  E++Q++H  +E+EVACLDI+PL +    S P    L A+G
Sbjct:   505 SSQVVVAVGRALYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGLS-P----LCAIG 559

Query:   376 LWTDISARLLSLPSLEEVCKEPLGGEIIPRSILMTCFEGHCYLLVALGDGSMFYFSLDPA 435
             LWTDISAR+L LPS E + KE LGGEIIPRSILMT FE   YLL ALGDG++FYF L+  
Sbjct:   560 LWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLNIE 619

Query:   436 SGRLTDKKKVTLGTQPTVLKTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLRQVNHM 495
             +G L+D+KKVTLGTQPTVL+TFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNL++VN+M
Sbjct:   620 TGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLKEVNYM 679

Query:   496 CSLNAESYPDSLALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTR 555
             C LN++ YPDSLALA +ST T GTIDEIQKLHIRTVPL E+PR+I YQE SQ FGV+++R
Sbjct:   680 CPLNSDGYPDSLALANNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSR 739

Query:   556 IDIQEADG-STPVRPXXXXXXXXXXXXXXXXXXYIKPGSTKQSTANQPADFNMEVEVHNL 614
             I++Q+  G +T +RP                           STA     F  EVEVHNL
Sbjct:   740 IEVQDTSGGTTALRPSASTQALSSSVSSSKLFS--------SSTAPHETSFGEEVEVHNL 791

Query:   615 LIIDQNTFE----RNFTSST-DLNLVVAK-----NNRIEIHT--VTPEGLRPVKEIFLYG 662
             LIIDQ+TFE      F  +   L+LV  K     N    + T  V PE   P K+    G
Sbjct:   792 LIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEP-KQ----G 846

Query:   663 KIAVMKFFRGPTD---KKDLLFIITQRTDLN--LVVAKNNRIEIHTVTPE 707
             +I V ++  G      +K++   +    + N  L+ + N+ + ++  T E
Sbjct:   847 RIVVFQYSDGKLQTVAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTTE 896

 Score = 961 (343.3 bits), Expect = 3.9e-192, Sum P(2) = 3.9e-192
 Identities = 181/284 (63%), Positives = 227/284 (79%)

Query:   684 TQRTDLNLVVAKNNRIEIHTVTPEGLRPVKEIFLYGKIAVMKFFRGPTDKKDLLFIITQR 743
             T   DLNL++AKN R+EI+ VT EGLRPVKE+ +YGKIAVM+ FR   + KDLLFI+T +
Sbjct:    24 TSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGKIAVMELFRPKGESKDLLFILTAK 83

Query:   744 YNAMILECRGDIDNLEILTKAHGNVSDRIGKPSENGIIAIIDPEARVIGLRLYNGLFKII 803
             YNA ILE +   ++++I+T+AHGNV DRIG+PSE GII IIDPE R+IGLRLY+GLFK+I
Sbjct:    84 YNACILEYKQSGESIDIITRAHGNVQDRIGRPSETGIIGIIDPECRMIGLRLYDGLFKVI 143

Query:   804 PLEKDNFELKASSIRMEELEIQDVQFLHGCQNPTIICIHQDVNGRHVKTHEISLKEKEFT 863
             PL++DN ELKA +IR+EEL + DV+FL+GCQ PTI  ++QD  GRHVKT+E+SL+EKEF 
Sbjct:   144 PLDRDNKELKAFNIRLEELHVIDVKFLYGCQAPTICFVYQDPQGRHVKTYEVSLREKEFN 203

Query:   864 KTPWKQDNIEMEASLVIPVPEPLGGAIIIGQESILYHSGKSYVAVAPQIIKSSTIVCYAK 923
             K PWKQ+N+E EAS+VI VPEP GGAIIIGQESI YH+G  Y+A+AP IIK STIVC+ +
Sbjct:   204 KGPWKQENVEAEASMVIAVPEPFGGAIIIGQESITYHNGDKYLAIAPPIIKQSTIVCHNR 263

Query:   924 VDANGERYLLGDLAGRLFXXXXXXXXXXDGTFSVKEPKVELLGE 967
             VD NG RYLLGD+ GRLF          DGT ++K+ +VELLGE
Sbjct:   264 VDPNGSRYLLGDMEGRLFMLLLEKEEQMDGTVTLKDLRVELLGE 307

 Score = 923 (330.0 bits), Expect = 3.9e-192, Sum P(2) = 3.9e-192
 Identities = 173/240 (72%), Positives = 205/240 (85%)

Query:   977 SSLSYIKPGSTKQSTANQPADFNMEVEVHNLLIIDQNTFEILHAHQLFPGEYALSLISSK 1036
             SS+S  K  S+  STA     F  EVEVHNLLIIDQ+TFE+LHAHQ    EYALSL+S K
Sbjct:   763 SSVSSSKLFSS--STAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCK 820

Query:  1037 FGEDPNTYFVLGTAVVHPEENEPKQGRIIIFHYDDGKLQQIAEKEIKGACYSMCEFNGKL 1096
              G+DPNTYF++GTA+V+PEE EPKQGRI++F Y DGKLQ +AEKE+KGA YSM EFNGKL
Sbjct:   821 LGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEFNGKL 880

Query:  1097 LASINSTVRLFEWTNEKELRLECSHFNNIIALFLKVKGDFILVGDLMRSLTLLQYKTMEG 1156
             LASINSTVRL+EWT EKELR EC+H+NNI+AL+LK KGDFILVGDLMRS+ LL YK MEG
Sbjct:   881 LASINSTVRLYEWTTEKELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEG 940

Query:  1157 SFEEISRDYNPNWMTSIEILDDELFLGAENSYNLFICQKDSAATSDEDRTHLQEVGTVHL 1216
             +FEEI+RD+NPNWM+++EILDD+ FLGAEN++NLF+CQKDSAAT+DE+R HLQEVG  HL
Sbjct:   941 NFEEIARDFNPNWMSAVEILDDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFHL 1000

 Score = 210 (79.0 bits), Expect = 8.9e-113, Sum P(2) = 8.9e-113
 Identities = 42/81 (51%), Positives = 59/81 (72%)

Query:   625 NFTSSTDLNLVVAKNNRIEIHTVTPEGLRPVKEIFLYGKIAVMKFFRGPTDKKDLLFIIT 684
             +FTS+ DLNL++AKN R+EI+ VT EGLRPVKE+ +YGKIAVM+ FR   + KDLLFI+T
Sbjct:    22 HFTSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGKIAVMELFRPKGESKDLLFILT 81

Query:   685 QRTDLNLVVAKNNRIEIHTVT 705
              + +  ++  K +   I  +T
Sbjct:    82 AKYNACILEYKQSGESIDIIT 102

 Score = 209 (78.6 bits), Expect = 1.1e-112, Sum P(2) = 1.1e-112
 Identities = 45/68 (66%), Positives = 49/68 (72%)

Query:     1 EGSLRIIRNGIGIEEHACIDLPGIKGIWALSIGSPKNLDNTLVLSFVGHTRVLTLSGAEW 60
             EGSLRIIRNGIGI EHA IDLPGIKG+W L     +  D+TLVLSFVG TRVL L+G E 
Sbjct:   384 EGSLRIIRNGIGIHEHASIDLPGIKGLWPLRSDPNRETDDTLVLSFVGQTRVLMLNGEEV 443

Query:    61 GFHLLRGF 68
                 L GF
Sbjct:   444 EETELMGF 451

 Score = 43 (20.2 bits), Expect = 3.8e-95, Sum P(2) = 3.8e-95
 Identities = 11/26 (42%), Positives = 13/26 (50%)

Query:   396 EPLGGEIIPRSILMTCFEGHCYLLVA 421
             EP GG II     +T   G  YL +A
Sbjct:   224 EPFGGAIIIGQESITYHNGDKYLAIA 249


>UNIPROTKB|P33194 [details] [associations]
            symbol:DDB1 "DNA damage-binding protein 1" species:9534
            "Chlorocebus aethiops" [GO:0005634 "nucleus" evidence=ISS]
            [GO:0005737 "cytoplasm" evidence=ISS] [GO:0031464 "Cul4A-RING
            ubiquitin ligase complex" evidence=ISS] [GO:0031465 "Cul4B-RING
            ubiquitin ligase complex" evidence=ISS] [GO:0043161 "proteasomal
            ubiquitin-dependent protein catabolic process" evidence=ISS]
            [GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISS]
            InterPro:IPR004871 InterPro:IPR015943 Pfam:PF03178
            UniPathway:UPA00143 GO:GO:0005634 GO:GO:0005737 GO:GO:0043161
            Gene3D:2.130.10.10 GO:GO:0003677 GO:GO:0006281 GO:GO:0016567
            GO:GO:0031464 GO:GO:0031465 HOVERGEN:HBG005460 EMBL:L20216
            PIR:S38777 PRIDE:P33194 Uniprot:P33194
        Length = 1140

 Score = 1724 (611.9 bits), Expect = 1.5e-177, P = 1.5e-177
 Identities = 369/650 (56%), Positives = 451/650 (69%)

Query:    76 NGWSERYLLGDLAGRLFXXXXXXXXXXDGTFSVKEPKVELLGEISIPECLTYLDNGVVFV 135
             NG   RYLLGD+ GRLF          DGT ++K+ +VELLGE SI ECLTYLDNGVVFV
Sbjct:   267 NG--SRYLLGDMEGRLFMLLLEKEEQMDGTVTLKDLRVELLGETSIAECLTYLDNGVVFV 324

Query:   136 GSRLGDSQLVKLNRSPDENGTYVSVMESFTNLAPIIDMVVVDLERQGQGQLVTCSGGFKE 195
             GSRLGDSQLVKLN   +E G+YV  ME+FTNL PI+DM VVDLERQGQGQLVTCSG FKE
Sbjct:   325 GSRLGDSQLVKLNVDSNEQGSYVVAMETFTNLGPIVDMCVVDLERQGQGQLVTCSGAFKE 384

Query:   196 GSLRIIRNGIGIEEHACIDLPGIKGIWALSIGSPKNLDNTLVLSFVGHTRVLTLSGAEVE 255
             GSLRIIRNGIGI EHA IDLPGIKG+W L     +  D+TLVLSFVG TRVL L+G EVE
Sbjct:   385 GSLRIIRNGIGIHEHASIDLPGIKGLWPLRSDPNRETDDTLVLSFVGQTRVLMLNGEEVE 444

Query:   256 ETEMGGFTSDQQTFYCGNVDPRTVLQVTPSAAILISTESKARVSSWEPPNGKSISVVSCN 315
             ETE+ GF  DQQTF+CGNV  + ++Q+T ++  L+S E KA VS W+ P  K+ISV SCN
Sbjct:   445 ETELMGFVDDQQTFFCGNVAHQQLIQITSASVRLVSQEPKALVSEWKEPQAKNISVASCN 504

Query:   316 KNQVLCATGCDVYYLEVHGSEIKQLAHRALEYEVACLDISPLSNEETSSEPAKAQLAAVG 375
              +QV+ A G  +YYL++H  E++Q++H  +E+EVACLDI+PL +    S P    L A+G
Sbjct:   505 SSQVVVAVGRALYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGLS-P----LCAIG 559

Query:   376 LWTDISARLLSLPSLEEVCKEPLGGEIIPRSILMTCFEGHCYLLVALGDGSMFYFSLDPA 435
             LWTDISAR+L LPS E + KE LGGEIIPRSILMT FE   YLL ALGDG++FYF L+  
Sbjct:   560 LWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLNIE 619

Query:   436 SGRLTDKKKVTLGTQPTVLKTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLRQVNHM 495
             +G L+D+KKVTLGTQPTVL+TFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNL++VN+M
Sbjct:   620 TGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLKEVNYM 679

Query:   496 CSLNAESYPDSLALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTR 555
             C LN++ YPDSLALA +ST T GTIDEIQKLHIRTVPL E+PR+I YQE SQ FGV+++R
Sbjct:   680 CPLNSDGYPDSLALANNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSR 739

Query:   556 IDIQEADG-STPVRPXXXXXXXXXXXXXXXXXXYIKPGSTKQSTANQPADFNMEVEVHNL 614
             I++Q+  G +T +RP                           STA     F  EVEVHNL
Sbjct:   740 IEVQDTSGGTTALRPSASTQALSSSVSSSKLFS--------SSTAPHETSFGEEVEVHNL 791

Query:   615 LIIDQNTFE----RNFTSST-DLNLVVAK-----NNRIEIHT--VTPEGLRPVKEIFLYG 662
             LIIDQ+TFE      F  +   L+LV  K     N    + T  V PE   P K+    G
Sbjct:   792 LIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEP-KQ----G 846

Query:   663 KIAVMKFFRGPTD---KKDLLFIITQRTDLN--LVVAKNNRIEIHTVTPE 707
             +I V ++  G      +K++   +    + N  L+ + N+ + ++  T E
Sbjct:   847 RIVVFQYSDGKLQTVAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTTE 896

 Score = 961 (343.3 bits), Expect = 3.9e-192, Sum P(2) = 3.9e-192
 Identities = 181/284 (63%), Positives = 227/284 (79%)

Query:   684 TQRTDLNLVVAKNNRIEIHTVTPEGLRPVKEIFLYGKIAVMKFFRGPTDKKDLLFIITQR 743
             T   DLNL++AKN R+EI+ VT EGLRPVKE+ +YGKIAVM+ FR   + KDLLFI+T +
Sbjct:    24 TSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGKIAVMELFRPKGESKDLLFILTAK 83

Query:   744 YNAMILECRGDIDNLEILTKAHGNVSDRIGKPSENGIIAIIDPEARVIGLRLYNGLFKII 803
             YNA ILE +   ++++I+T+AHGNV DRIG+PSE GII IIDPE R+IGLRLY+GLFK+I
Sbjct:    84 YNACILEYKQSGESIDIITRAHGNVQDRIGRPSETGIIGIIDPECRMIGLRLYDGLFKVI 143

Query:   804 PLEKDNFELKASSIRMEELEIQDVQFLHGCQNPTIICIHQDVNGRHVKTHEISLKEKEFT 863
             PL++DN ELKA +IR+EEL + DV+FL+GCQ PTI  ++QD  GRHVKT+E+SL+EKEF 
Sbjct:   144 PLDRDNKELKAFNIRLEELHVIDVKFLYGCQAPTICFVYQDPQGRHVKTYEVSLREKEFN 203

Query:   864 KTPWKQDNIEMEASLVIPVPEPLGGAIIIGQESILYHSGKSYVAVAPQIIKSSTIVCYAK 923
             K PWKQ+N+E EAS+VI VPEP GGAIIIGQESI YH+G  Y+A+AP IIK STIVC+ +
Sbjct:   204 KGPWKQENVEAEASMVIAVPEPFGGAIIIGQESITYHNGDKYLAIAPPIIKQSTIVCHNR 263

Query:   924 VDANGERYLLGDLAGRLFXXXXXXXXXXDGTFSVKEPKVELLGE 967
             VD NG RYLLGD+ GRLF          DGT ++K+ +VELLGE
Sbjct:   264 VDPNGSRYLLGDMEGRLFMLLLEKEEQMDGTVTLKDLRVELLGE 307

 Score = 923 (330.0 bits), Expect = 3.9e-192, Sum P(2) = 3.9e-192
 Identities = 173/240 (72%), Positives = 205/240 (85%)

Query:   977 SSLSYIKPGSTKQSTANQPADFNMEVEVHNLLIIDQNTFEILHAHQLFPGEYALSLISSK 1036
             SS+S  K  S+  STA     F  EVEVHNLLIIDQ+TFE+LHAHQ    EYALSL+S K
Sbjct:   763 SSVSSSKLFSS--STAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCK 820

Query:  1037 FGEDPNTYFVLGTAVVHPEENEPKQGRIIIFHYDDGKLQQIAEKEIKGACYSMCEFNGKL 1096
              G+DPNTYF++GTA+V+PEE EPKQGRI++F Y DGKLQ +AEKE+KGA YSM EFNGKL
Sbjct:   821 LGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEFNGKL 880

Query:  1097 LASINSTVRLFEWTNEKELRLECSHFNNIIALFLKVKGDFILVGDLMRSLTLLQYKTMEG 1156
             LASINSTVRL+EWT EKELR EC+H+NNI+AL+LK KGDFILVGDLMRS+ LL YK MEG
Sbjct:   881 LASINSTVRLYEWTTEKELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEG 940

Query:  1157 SFEEISRDYNPNWMTSIEILDDELFLGAENSYNLFICQKDSAATSDEDRTHLQEVGTVHL 1216
             +FEEI+RD+NPNWM+++EILDD+ FLGAEN++NLF+CQKDSAAT+DE+R HLQEVG  HL
Sbjct:   941 NFEEIARDFNPNWMSAVEILDDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFHL 1000

 Score = 210 (79.0 bits), Expect = 8.9e-113, Sum P(2) = 8.9e-113
 Identities = 42/81 (51%), Positives = 59/81 (72%)

Query:   625 NFTSSTDLNLVVAKNNRIEIHTVTPEGLRPVKEIFLYGKIAVMKFFRGPTDKKDLLFIIT 684
             +FTS+ DLNL++AKN R+EI+ VT EGLRPVKE+ +YGKIAVM+ FR   + KDLLFI+T
Sbjct:    22 HFTSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGKIAVMELFRPKGESKDLLFILT 81

Query:   685 QRTDLNLVVAKNNRIEIHTVT 705
              + +  ++  K +   I  +T
Sbjct:    82 AKYNACILEYKQSGESIDIIT 102

 Score = 209 (78.6 bits), Expect = 1.1e-112, Sum P(2) = 1.1e-112
 Identities = 45/68 (66%), Positives = 49/68 (72%)

Query:     1 EGSLRIIRNGIGIEEHACIDLPGIKGIWALSIGSPKNLDNTLVLSFVGHTRVLTLSGAEW 60
             EGSLRIIRNGIGI EHA IDLPGIKG+W L     +  D+TLVLSFVG TRVL L+G E 
Sbjct:   384 EGSLRIIRNGIGIHEHASIDLPGIKGLWPLRSDPNRETDDTLVLSFVGQTRVLMLNGEEV 443

Query:    61 GFHLLRGF 68
                 L GF
Sbjct:   444 EETELMGF 451

 Score = 43 (20.2 bits), Expect = 3.8e-95, Sum P(2) = 3.8e-95
 Identities = 11/26 (42%), Positives = 13/26 (50%)

Query:   396 EPLGGEIIPRSILMTCFEGHCYLLVA 421
             EP GG II     +T   G  YL +A
Sbjct:   224 EPFGGAIIIGQESITYHNGDKYLAIA 249


>RGD|621889 [details] [associations]
            symbol:Ddb1 "damage-specific DNA binding protein 1, 127kDa"
            species:10116 "Rattus norvegicus" [GO:0000075 "cell cycle
            checkpoint" evidence=IEA;ISO] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0003684 "damaged DNA binding" evidence=IMP]
            [GO:0005575 "cellular_component" evidence=ND] [GO:0005634 "nucleus"
            evidence=IEA;ISO;ISS] [GO:0005737 "cytoplasm" evidence=IEA;ISO;ISS]
            [GO:0006281 "DNA repair" evidence=TAS] [GO:0016055 "Wnt receptor
            signaling pathway" evidence=IEA;ISO] [GO:0016567 "protein
            ubiquitination" evidence=IEA] [GO:0031464 "Cul4A-RING ubiquitin
            ligase complex" evidence=IEA;ISO;ISS] [GO:0031465 "Cul4B-RING
            ubiquitin ligase complex" evidence=IEA;ISO;ISS] [GO:0042787
            "protein ubiquitination involved in ubiquitin-dependent protein
            catabolic process" evidence=IEA;ISO] [GO:0043161 "proteasomal
            ubiquitin-dependent protein catabolic process"
            evidence=IEA;ISO;ISS] [GO:0080008 "Cul4-RING ubiquitin ligase
            complex" evidence=ISO;ISS] InterPro:IPR004871 InterPro:IPR015943
            Pfam:PF03178 UniPathway:UPA00143 RGD:621889 GO:GO:0005634
            GO:GO:0005737 GO:GO:0043161 GO:GO:0016055 Gene3D:2.130.10.10
            GO:GO:0003684 GO:GO:0006281 GO:GO:0042787 GO:GO:0000075
            GO:GO:0031464 GO:GO:0031465 eggNOG:NOG247734 HOGENOM:HOG000007241
            HOVERGEN:HBG005460 HSSP:Q16531 EMBL:AJ277077 IPI:IPI00324451
            UniGene:Rn.8402 IntAct:Q9ESW0 MINT:MINT-4784948 STRING:Q9ESW0
            PhosphoSite:Q9ESW0 PRIDE:Q9ESW0 UCSC:RGD:621889 InParanoid:Q9ESW0
            ArrayExpress:Q9ESW0 Genevestigator:Q9ESW0 Uniprot:Q9ESW0
        Length = 1140

 Score = 1703 (604.5 bits), Expect = 2.5e-175, P = 2.5e-175
 Identities = 364/650 (56%), Positives = 448/650 (68%)

Query:    76 NGWSERYLLGDLAGRLFXXXXXXXXXXDGTFSVKEPKVELLGEISIPECLTYLDNGVVFV 135
             NG   RYLLGD+ GRLF          DGT ++K+ +VELLGE SI ECLTYLDNGVVFV
Sbjct:   267 NG--SRYLLGDMEGRLFMLLLEKEEQMDGTVTLKDLRVELLGETSIAECLTYLDNGVVFV 324

Query:   136 GSRLGDSQLVKLNRSPDENGTYVSVMESFTNLAPIIDMVVVDLERQGQGQLVTCSGGFKE 195
             GSRLGDSQ VKLN   +E G+YV  ME+FTNL PI+DM VVDLERQGQGQLVTCSG FKE
Sbjct:   325 GSRLGDSQPVKLNVDSNEQGSYVVAMETFTNLGPIVDMCVVDLERQGQGQLVTCSGAFKE 384

Query:   196 GSLRIIRNGIGIEEHACIDLPGIKGIWALSIGSPKNLDNTLVLSFVGHTRVLTLSGAEVE 255
             GSLRIIRNGIGI EHA IDLPGIKG+W L     +  D+TLVLSFVG TRVL L+G EVE
Sbjct:   385 GSLRIIRNGIGIHEHASIDLPGIKGLWPLRSDPNRETDDTLVLSFVGQTRVLMLNGEEVE 444

Query:   256 ETEMGGFTSDQQTFYCGNVDPRTVLQVTPSAAILISTESKARVSSWEPPNGKSISVVSCN 315
             ETE+ GF  DQQTF+CGNV  + ++Q+T ++  L+S E KA VS W+ P  K+ISV SCN
Sbjct:   445 ETELMGFVDDQQTFFCGNVAHQQLIQITSASVRLVSQEPKALVSEWKEPRAKNISVASCN 504

Query:   316 KNQVLCATGCDVYYLEVHGSEIKQLAHRALEYEVACLDISPLSNEETSSEPAKAQLAAVG 375
              +QV+ A G  +YYL++H  E++Q++H  +E+EVACLD++PL +    S P    L A+G
Sbjct:   505 SSQVVVAVGRALYYLQIHPQELRQISHTEMEHEVACLDVTPLGDSNGLS-P----LCAIG 559

Query:   376 LWTDISARLLSLPSLEEVCKEPLGGEIIPRSILMTCFEGHCYLLVALGDGSMFYFSLDPA 435
             LWTDISAR+L LPS E + KE LGGEIIPRSILMT FE   YLL ALGDG++FYF L+  
Sbjct:   560 LWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLNIE 619

Query:   436 SGRLTDKKKVTLGTQPTVLKTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLRQVNHM 495
             +G L+D+KKVTLGTQPTVL+TFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNL++VN+M
Sbjct:   620 TGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLKEVNYM 679

Query:   496 CSLNAESYPDSLALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTR 555
             C LN++ YPDSLALA  ST T GT++EIQKLHIRTVP+ E+PR+I YQE SQ FGV++TR
Sbjct:   680 CPLNSDGYPDSLALANTSTLTIGTMNEIQKLHIRTVPIYESPRKICYQEVSQCFGVLSTR 739

Query:   556 IDIQEADG-STPVRPXXXXXXXXXXXXXXXXXXYIKPGSTKQSTANQPADFNMEVEVHNL 614
             I++Q+  G +T +RP                           S A     F  EVEVHNL
Sbjct:   740 IEVQDTSGGTTALRPSASTQALSSSVSSSKLFS--------SSAAPHETSFGEEVEVHNL 791

Query:   615 LIIDQNTFE----RNFTSST-DLNLVVAK-----NNRIEIHT--VTPEGLRPVKEIFLYG 662
             LIIDQ+TFE      F  +   L+LV  K     N    + T  V PE   P K+    G
Sbjct:   792 LIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEP-KQ----G 846

Query:   663 KIAVMKFFRGPTD---KKDLLFIITQRTDLN--LVVAKNNRIEIHTVTPE 707
             +I V ++  G      +K++   +    + N  L+ + N+ + ++  T E
Sbjct:   847 RIVVFQYSGGKLQTVAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTTE 896

 Score = 965 (344.8 bits), Expect = 2.7e-191, Sum P(2) = 2.7e-191
 Identities = 187/332 (56%), Positives = 241/332 (72%)

Query:   684 TQRTDLNLVVAKNNRIEIHTVTPEGLRPVKEIFLYGKIAVMKFFRGPTDKKDLLFIITQR 743
             T   D+NL++AKN R+EI+ VT EGLRPVKE+ +YGKIAVM+ FR   + KDLLFI+T +
Sbjct:    24 TSAEDINLLIAKNTRLEIYVVTAEGLRPVKEVGMYGKIAVMELFRPKGESKDLLFILTAK 83

Query:   744 YNAMILECRGDIDNLEILTKAHGNVSDRIGKPSENGIIAIIDPEARVIGLRLYNGLFKII 803
             YNA ILE +   ++++I+T+AHGNV DRIG+PSE GII IIDPE R+IGLRLY+GLFK+I
Sbjct:    84 YNACILEYKQSGESIDIITRAHGNVQDRIGRPSETGIIGIIDPECRMIGLRLYDGLFKVI 143

Query:   804 PLEKDNFELKASSIRMEELEIQDVQFLHGCQNPTIICIHQDVNGRHVKTHEISLKEKEFT 863
             PL++DN ELKA +IR+EEL + DV+FL+GCQ PTI  ++QD  GRHVKT+E+SL+EKEF 
Sbjct:   144 PLDRDNKELKAFNIRLEELHVIDVKFLYGCQAPTICFVYQDPQGRHVKTYEVSLREKEFN 203

Query:   864 KTPWKQDNIEMEASLVIPVPEPLGGAIIIGQESILYHSGKSYVAVAPQIIKSSTIVCYAK 923
             K PWKQ+N+E EAS+VI VPEP GGAIIIGQESI YH+G  Y+A+AP IIK STIVC+ +
Sbjct:   204 KGPWKQENVEAEASMVIAVPEPFGGAIIIGQESITYHNGDKYLAIAPPIIKQSTIVCHNR 263

Query:   924 VDANGERYLLGDLAGRLFXXXXXXXXXXDGTFSVKEPKVELLGEHCKGPVVEMSSLSYIK 983
             VD NG RYLLGD+ GRLF          DGT ++K+ +VELLGE      +       + 
Sbjct:   264 VDPNGSRYLLGDMEGRLFMLLLEKEEQMDGTVTLKDLRVELLGETSIAECLTYLDNGVVF 323

Query:   984 PGSTKQSTANQPADFNMEVEVHNLLIIDQNTF 1015
              GS    +  QP   N++       ++   TF
Sbjct:   324 VGSRLGDS--QPVKLNVDSNEQGSYVVAMETF 353

 Score = 911 (325.7 bits), Expect = 2.7e-191, Sum P(2) = 2.7e-191
 Identities = 171/240 (71%), Positives = 203/240 (84%)

Query:   977 SSLSYIKPGSTKQSTANQPADFNMEVEVHNLLIIDQNTFEILHAHQLFPGEYALSLISSK 1036
             SS+S  K  S+  S A     F  EVEVHNLLIIDQ+TFE+LHAHQ    EYALSL+S K
Sbjct:   763 SSVSSSKLFSS--SAAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCK 820

Query:  1037 FGEDPNTYFVLGTAVVHPEENEPKQGRIIIFHYDDGKLQQIAEKEIKGACYSMCEFNGKL 1096
              G+DPNTYF++GTA+V+PEE EPKQGRI++F Y  GKLQ +AEKE+KGA YSM EFNGKL
Sbjct:   821 LGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSGGKLQTVAEKEVKGAVYSMVEFNGKL 880

Query:  1097 LASINSTVRLFEWTNEKELRLECSHFNNIIALFLKVKGDFILVGDLMRSLTLLQYKTMEG 1156
             LASINSTVRL+EWT EKELR EC+H+NNI+AL+LK KGDFILVGDLMRS+ LL YK MEG
Sbjct:   881 LASINSTVRLYEWTTEKELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEG 940

Query:  1157 SFEEISRDYNPNWMTSIEILDDELFLGAENSYNLFICQKDSAATSDEDRTHLQEVGTVHL 1216
             +FEEI+RD+NPNWM+++EILDD+ FLGAEN++NLF+CQKDSAAT+DE+R HLQEVG  HL
Sbjct:   941 NFEEIARDFNPNWMSAVEILDDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFHL 1000

 Score = 209 (78.6 bits), Expect = 2.1e-111, Sum P(2) = 2.1e-111
 Identities = 45/68 (66%), Positives = 49/68 (72%)

Query:     1 EGSLRIIRNGIGIEEHACIDLPGIKGIWALSIGSPKNLDNTLVLSFVGHTRVLTLSGAEW 60
             EGSLRIIRNGIGI EHA IDLPGIKG+W L     +  D+TLVLSFVG TRVL L+G E 
Sbjct:   384 EGSLRIIRNGIGIHEHASIDLPGIKGLWPLRSDPNRETDDTLVLSFVGQTRVLMLNGEEV 443

Query:    61 GFHLLRGF 68
                 L GF
Sbjct:   444 EETELMGF 451

 Score = 208 (78.3 bits), Expect = 2.7e-111, Sum P(2) = 2.7e-111
 Identities = 41/81 (50%), Positives = 59/81 (72%)

Query:   625 NFTSSTDLNLVVAKNNRIEIHTVTPEGLRPVKEIFLYGKIAVMKFFRGPTDKKDLLFIIT 684
             +FTS+ D+NL++AKN R+EI+ VT EGLRPVKE+ +YGKIAVM+ FR   + KDLLFI+T
Sbjct:    22 HFTSAEDINLLIAKNTRLEIYVVTAEGLRPVKEVGMYGKIAVMELFRPKGESKDLLFILT 81

Query:   685 QRTDLNLVVAKNNRIEIHTVT 705
              + +  ++  K +   I  +T
Sbjct:    82 AKYNACILEYKQSGESIDIIT 102

 Score = 43 (20.2 bits), Expect = 6.9e-94, Sum P(2) = 6.9e-94
 Identities = 11/26 (42%), Positives = 13/26 (50%)

Query:   396 EPLGGEIIPRSILMTCFEGHCYLLVA 421
             EP GG II     +T   G  YL +A
Sbjct:   224 EPFGGAIIIGQESITYHNGDKYLAIA 249


>UNIPROTKB|Q5R649 [details] [associations]
            symbol:DDB1 "DNA damage-binding protein 1" species:9601
            "Pongo abelii" [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
            "cytoplasm" evidence=ISS] [GO:0031464 "Cul4A-RING ubiquitin ligase
            complex" evidence=ISS] [GO:0031465 "Cul4B-RING ubiquitin ligase
            complex" evidence=ISS] [GO:0043161 "proteasomal ubiquitin-dependent
            protein catabolic process" evidence=ISS] [GO:0080008 "Cul4-RING
            ubiquitin ligase complex" evidence=ISS] InterPro:IPR004871
            InterPro:IPR015943 Pfam:PF03178 UniPathway:UPA00143 GO:GO:0005634
            GO:GO:0005737 GO:GO:0043161 Gene3D:2.130.10.10 GO:GO:0003677
            GO:GO:0006281 GO:GO:0016567 GO:GO:0031464 GO:GO:0031465 KO:K10610
            CTD:1642 HOVERGEN:HBG005460 HSSP:Q16531 EMBL:CR860647
            RefSeq:NP_001126613.1 UniGene:Pab.18111 GeneID:100173610
            KEGG:pon:100173610 InParanoid:Q5R649 Uniprot:Q5R649
        Length = 1140

 Score = 1723 (611.6 bits), Expect = 1.9e-177, P = 1.9e-177
 Identities = 369/650 (56%), Positives = 451/650 (69%)

Query:    76 NGWSERYLLGDLAGRLFXXXXXXXXXXDGTFSVKEPKVELLGEISIPECLTYLDNGVVFV 135
             NG   RYLLGD+ GRLF          DGT ++K+ +VELLGE SI ECLTYLDNGVVFV
Sbjct:   267 NG--SRYLLGDMEGRLFMLLLEKEEQMDGTVTLKDLRVELLGETSIAECLTYLDNGVVFV 324

Query:   136 GSRLGDSQLVKLNRSPDENGTYVSVMESFTNLAPIIDMVVVDLERQGQGQLVTCSGGFKE 195
             GSRLGDSQLVKLN   +E G+YV  ME+FTNL PI+DM VVDLERQGQGQLVTCSG FKE
Sbjct:   325 GSRLGDSQLVKLNVDSNEQGSYVVAMETFTNLGPIVDMCVVDLERQGQGQLVTCSGAFKE 384

Query:   196 GSLRIIRNGIGIEEHACIDLPGIKGIWALSIGSPKNLDNTLVLSFVGHTRVLTLSGAEVE 255
             GSLRIIRNGIGI EHA IDLPGIKG+W L     +  D+TLVLSFVG TRVL L+G EVE
Sbjct:   385 GSLRIIRNGIGIHEHASIDLPGIKGLWPLRSDPNRETDDTLVLSFVGQTRVLMLNGEEVE 444

Query:   256 ETEMGGFTSDQQTFYCGNVDPRTVLQVTPSAAILISTESKARVSSWEPPNGKSISVVSCN 315
             ETE+ GF  DQQTF+CGNV  + ++Q+T ++  L+S E KA VS W+ P  K+ISV SCN
Sbjct:   445 ETELMGFVDDQQTFFCGNVAHQQLIQITSASVRLVSQEPKALVSEWKEPQAKNISVASCN 504

Query:   316 KNQVLCATGCDVYYLEVHGSEIKQLAHRALEYEVACLDISPLSNEETSSEPAKAQLAAVG 375
              +QV+ A G  +YYL++H  E++Q++H  +E+EVACLDI+PL +    S P    L A+G
Sbjct:   505 SSQVVVAVGRALYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGLS-P----LCAIG 559

Query:   376 LWTDISARLLSLPSLEEVCKEPLGGEIIPRSILMTCFEGHCYLLVALGDGSMFYFSLDPA 435
             LWTDISAR+L LPS E + KE LGGEIIPRSILMT FE   YLL ALGDG++FYF L+  
Sbjct:   560 LWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLNIE 619

Query:   436 SGRLTDKKKVTLGTQPTVLKTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLRQVNHM 495
             +G L+D+KKVTLGTQPTVL+TFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNL++VN+M
Sbjct:   620 TGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLKEVNYM 679

Query:   496 CSLNAESYPDSLALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTR 555
             C LN++ YPDSLALA +ST T GTIDEIQKLHIRTVPL E+PR+I YQE SQ FGV+++R
Sbjct:   680 CPLNSDGYPDSLALANNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSR 739

Query:   556 IDIQEADG-STPVRPXXXXXXXXXXXXXXXXXXYIKPGSTKQSTANQPADFNMEVEVHNL 614
             I++Q+  G +T +RP                           STA     F  EVEVHNL
Sbjct:   740 IEVQDTSGGTTALRPSASTQALSSSVSSSKLFS--------SSTAPHETSFGEEVEVHNL 791

Query:   615 LIIDQNTFE----RNFTSST-DLNLVVAK-----NNRIEIHT--VTPEGLRPVKEIFLYG 662
             LIIDQ+TFE      F  +   L+LV  K     N    + T  V PE   P K+    G
Sbjct:   792 LIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEP-KQ----G 846

Query:   663 KIAVMKFFRGPTD---KKDLLFIITQRTDLN--LVVAKNNRIEIHTVTPE 707
             +I V ++  G      +K++   +    + N  L+ + N+ + ++  T E
Sbjct:   847 RIVVFQYSDGKLQTVAEKEVKGAVYPMVEFNGKLLASINSTVRLYEWTTE 896

 Score = 957 (341.9 bits), Expect = 3.5e-191, Sum P(2) = 3.5e-191
 Identities = 180/284 (63%), Positives = 226/284 (79%)

Query:   684 TQRTDLNLVVAKNNRIEIHTVTPEGLRPVKEIFLYGKIAVMKFFRGPTDKKDLLFIITQR 743
             T   DLNL++AKN R+EI+ VT EGLRPVKE+ +YGKIAVM+ FR   + KDLLFI+T +
Sbjct:    24 TSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGKIAVMELFRPKGESKDLLFILTAK 83

Query:   744 YNAMILECRGDIDNLEILTKAHGNVSDRIGKPSENGIIAIIDPEARVIGLRLYNGLFKII 803
             YN  ILE +   ++++I+T+AHGNV DRIG+PSE GII IIDPE R+IGLRLY+GLFK+I
Sbjct:    84 YNVCILEYKQSGESIDIITRAHGNVQDRIGRPSETGIIGIIDPECRMIGLRLYDGLFKVI 143

Query:   804 PLEKDNFELKASSIRMEELEIQDVQFLHGCQNPTIICIHQDVNGRHVKTHEISLKEKEFT 863
             PL++DN ELKA +IR+EEL + DV+FL+GCQ PTI  ++QD  GRHVKT+E+SL+EKEF 
Sbjct:   144 PLDRDNKELKAFNIRLEELHVIDVKFLYGCQAPTICFVYQDPQGRHVKTYEVSLREKEFN 203

Query:   864 KTPWKQDNIEMEASLVIPVPEPLGGAIIIGQESILYHSGKSYVAVAPQIIKSSTIVCYAK 923
             K PWKQ+N+E EAS+VI VPEP GGAIIIGQESI YH+G  Y+A+AP IIK STIVC+ +
Sbjct:   204 KGPWKQENVEAEASMVIAVPEPFGGAIIIGQESITYHNGDKYLAIAPPIIKQSTIVCHNR 263

Query:   924 VDANGERYLLGDLAGRLFXXXXXXXXXXDGTFSVKEPKVELLGE 967
             VD NG RYLLGD+ GRLF          DGT ++K+ +VELLGE
Sbjct:   264 VDPNGSRYLLGDMEGRLFMLLLEKEEQMDGTVTLKDLRVELLGE 307

 Score = 918 (328.2 bits), Expect = 3.5e-191, Sum P(2) = 3.5e-191
 Identities = 172/240 (71%), Positives = 204/240 (85%)

Query:   977 SSLSYIKPGSTKQSTANQPADFNMEVEVHNLLIIDQNTFEILHAHQLFPGEYALSLISSK 1036
             SS+S  K  S+  STA     F  EVEVHNLLIIDQ+TFE+LHAHQ    EYALSL+S K
Sbjct:   763 SSVSSSKLFSS--STAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCK 820

Query:  1037 FGEDPNTYFVLGTAVVHPEENEPKQGRIIIFHYDDGKLQQIAEKEIKGACYSMCEFNGKL 1096
              G+DPNTYF++GTA+V+PEE EPKQGRI++F Y DGKLQ +AEKE+KGA Y M EFNGKL
Sbjct:   821 LGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYPMVEFNGKL 880

Query:  1097 LASINSTVRLFEWTNEKELRLECSHFNNIIALFLKVKGDFILVGDLMRSLTLLQYKTMEG 1156
             LASINSTVRL+EWT EKELR EC+H+NNI+AL+LK KGDFILVGDLMRS+ LL YK MEG
Sbjct:   881 LASINSTVRLYEWTTEKELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEG 940

Query:  1157 SFEEISRDYNPNWMTSIEILDDELFLGAENSYNLFICQKDSAATSDEDRTHLQEVGTVHL 1216
             +FEEI+RD+NPNWM+++EILDD+ FLGAEN++NLF+CQKDSAAT+DE+R HLQEVG  HL
Sbjct:   941 NFEEIARDFNPNWMSAVEILDDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFHL 1000

 Score = 212 (79.7 bits), Expect = 1.8e-112, Sum P(2) = 1.8e-112
 Identities = 42/81 (51%), Positives = 60/81 (74%)

Query:   625 NFTSSTDLNLVVAKNNRIEIHTVTPEGLRPVKEIFLYGKIAVMKFFRGPTDKKDLLFIIT 684
             +FTS+ DLNL++AKN R+EI+ VT EGLRPVKE+ +YGKIAVM+ FR   + KDLLFI+T
Sbjct:    22 HFTSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGKIAVMELFRPKGESKDLLFILT 81

Query:   685 QRTDLNLVVAKNNRIEIHTVT 705
              + ++ ++  K +   I  +T
Sbjct:    82 AKYNVCILEYKQSGESIDIIT 102

 Score = 209 (78.6 bits), Expect = 3.8e-112, Sum P(2) = 3.8e-112
 Identities = 45/68 (66%), Positives = 49/68 (72%)

Query:     1 EGSLRIIRNGIGIEEHACIDLPGIKGIWALSIGSPKNLDNTLVLSFVGHTRVLTLSGAEW 60
             EGSLRIIRNGIGI EHA IDLPGIKG+W L     +  D+TLVLSFVG TRVL L+G E 
Sbjct:   384 EGSLRIIRNGIGIHEHASIDLPGIKGLWPLRSDPNRETDDTLVLSFVGQTRVLMLNGEEV 443

Query:    61 GFHLLRGF 68
                 L GF
Sbjct:   444 EETELMGF 451

 Score = 43 (20.2 bits), Expect = 1.3e-94, Sum P(2) = 1.3e-94
 Identities = 11/26 (42%), Positives = 13/26 (50%)

Query:   396 EPLGGEIIPRSILMTCFEGHCYLLVA 421
             EP GG II     +T   G  YL +A
Sbjct:   224 EPFGGAIIIGQESITYHNGDKYLAIA 249


>TAIR|locus:2115909 [details] [associations]
            symbol:DDB1A "damaged DNA binding protein 1A"
            species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=ISS]
            [GO:0005634 "nucleus" evidence=ISM;IEA;IDA;IPI] [GO:0010100
            "negative regulation of photomorphogenesis" evidence=IGI;RCA]
            [GO:0045892 "negative regulation of transcription, DNA-dependent"
            evidence=IPI] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=IPI]
            [GO:0005829 "cytosol" evidence=IDA] [GO:0000278 "mitotic cell
            cycle" evidence=RCA] [GO:0000911 "cytokinesis by cell plate
            formation" evidence=RCA] [GO:0003002 "regionalization"
            evidence=RCA] [GO:0006281 "DNA repair" evidence=RCA] [GO:0006486
            "protein glycosylation" evidence=RCA] [GO:0007155 "cell adhesion"
            evidence=RCA] [GO:0008284 "positive regulation of cell
            proliferation" evidence=RCA] [GO:0009630 "gravitropism"
            evidence=RCA] [GO:0009639 "response to red or far red light"
            evidence=RCA] [GO:0010090 "trichome morphogenesis" evidence=RCA]
            [GO:0033043 "regulation of organelle organization" evidence=RCA]
            [GO:0045010 "actin nucleation" evidence=RCA] [GO:0048449 "floral
            organ formation" evidence=RCA] [GO:0048608 "reproductive structure
            development" evidence=RCA] InterPro:IPR017986 InterPro:IPR004871
            InterPro:IPR015943 Pfam:PF03178 UniPathway:UPA00143 GO:GO:0005829
            GO:GO:0005634 GO:GO:0045892 EMBL:CP002687 GenomeReviews:CT486007_GR
            Gene3D:2.130.10.10 SUPFAM:SSF50978 GO:GO:0003677 GO:GO:0006281
            GO:GO:0016567 GO:GO:0009585 EMBL:AL161503 GO:GO:0080008
            GO:GO:0010100 EMBL:AY074257 EMBL:BT001905 EMBL:AK230366
            IPI:IPI00548104 PIR:B85068 RefSeq:NP_192451.1 UniGene:At.32663
            UniGene:At.47587 ProteinModelPortal:Q9M0V3 DIP:DIP-40455N
            IntAct:Q9M0V3 STRING:Q9M0V3 PaxDb:Q9M0V3 PRIDE:Q9M0V3 ProMEX:Q9M0V3
            EnsemblPlants:AT4G05420.1 GeneID:825890 KEGG:ath:AT4G05420
            GeneFarm:4660 TAIR:At4g05420 eggNOG:NOG247734 HOGENOM:HOG000007241
            InParanoid:Q9M0V3 KO:K10610 OMA:CALGDGS PhylomeDB:Q9M0V3
            ProtClustDB:CLSN2685347 Genevestigator:Q9M0V3 GermOnline:AT4G05420
            Uniprot:Q9M0V3
        Length = 1088

 Score = 1255 (446.8 bits), Expect = 1.5e-188, Sum P(2) = 1.5e-188
 Identities = 250/473 (52%), Positives = 329/473 (69%)

Query:    81 RYLLGDLAGRLFXXXXXXXXXXDGTFSVKEPKVELLGEISIPECLTYLDNGVVFVGSRLG 140
             RYLLGD AG +                V   K+ELLGE SI   ++YLDN VVFVGS  G
Sbjct:   267 RYLLGDHAGMIHLLVITHEKE-----KVTGLKIELLGETSIASTISYLDNAVVFVGSSYG 321

Query:   141 DSQLVKLNRSPDENGTYVSVMESFTNLAPIIDMVVVDLERQGQGQLVTCSGGFKEGSLRI 200
             DSQLVKLN  PD  G+YV V+E + NL PI+D  VVDLERQGQGQ+VTCSG FK+GSLR+
Sbjct:   322 DSQLVKLNLHPDAKGSYVEVLERYINLGPIVDFCVVDLERQGQGQVVTCSGAFKDGSLRV 381

Query:   201 IRNGIGIEEHACIDLPGIKGIWALSIGSPKNLDNTLVLSFVGHTRVLTLS-GAEVEETEM 259
             +RNGIGI E A ++L GIKG+W+L     +  D  LV+SF+  TR+L ++   E+EETE+
Sbjct:   382 VRNGIGINEQASVELQGIKGMWSLKSSIDEAFDTFLVVSFISETRILAMNLEDELEETEI 441

Query:   260 GGFTSDQQTFYCGNVDPRTVLQVTPSAAILISTESKARVSSWEPPNGKSISVVSCNKNQV 319
              GF S  QT +C +     ++QVT ++  L+S+ ++     W  P G +++V + N +QV
Sbjct:   442 EGFLSQVQTLFCHDAVYNQLVQVTSNSVRLVSSTTRELRDEWHAPAGFTVNVATANASQV 501

Query:   320 LCATGCD-VYYLEVHGSEIKQLAHRALEYEVACLDISPLSNEETSSEPAKAQLAAVGLWT 378
             L ATG   + YLE+   ++ ++ H  LEYEV+CLDI+P+ +      P  +QLAAVG+WT
Sbjct:   502 LLATGGGHLVYLEIGDGKLTEVQHALLEYEVSCLDINPIGDN-----PNYSQLAAVGMWT 556

Query:   379 DISARLLSLPSLEEVCKEPLGGEIIPRSILMTCFEGHCYLLVALGDGSMFYFSLDPASGR 438
             DIS R+ SLP L  + KE LGGEIIPRS+L+  FEG  YLL ALGDG +  F +D  +G+
Sbjct:   557 DISVRIFSLPELTLITKEQLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFQMDTTTGQ 616

Query:   439 LTDKKKVTLGTQPTVLKTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLRQVNHMCSL 498
             L D+KKV+LGTQP  L+TF S S T+VFA SDRPTVIYSSN KL++SNVNL++V+HMC  
Sbjct:   617 LKDRKKVSLGTQPITLRTFSSKSATHVFAASDRPTVIYSSNKKLLYSNVNLKEVSHMCPF 676

Query:   499 NAESYPDSLALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGV 551
             N+ ++PDSLA+A +   T GTID+IQKLHIRT+PLGE  RRI +QE ++TFG+
Sbjct:   677 NSAAFPDSLAIAREGELTIGTIDDIQKLHIRTIPLGEHARRICHQEQTRTFGI 729

 Score = 646 (232.5 bits), Expect = 1.3e-117, Sum P(2) = 1.3e-117
 Identities = 131/285 (45%), Positives = 194/285 (68%)

Query:   684 TQRTDLNLVVAKNNRIEIHTVTPEGLRPVKEIFLYGKIAVMKFFRGPTDKKDLLFIITQR 743
             T   +LNL+VAK  RIEIH +TP+GL+P+ ++ +YG+IA ++ FR   + +D LFI T+R
Sbjct:    25 TSPQELNLIVAKCTRIEIHLLTPQGLQPMLDVPIYGRIATLELFRPHGEAQDFLFIATER 84

Query:   744 YNAMILECRGDIDNLEILTKAHGNVSDRIGKPSENGIIAIIDPEARVIGLRLYNGLFKII 803
             Y   +L+   D ++ E++T+A G+VSDRIG+P++NG I IIDP+ R+IGL LY+GLFK+I
Sbjct:    85 YKFCVLQW--DPESSELITRAMGDVSDRIGRPTDNGQIGIIDPDCRLIGLHLYDGLFKVI 142

Query:   804 PLEKDNFELKASSIRMEELEIQDVQFLHGCQNPTIICIHQD-VNGRHVKTHEISLKEKEF 862
             P +      +A +IR+EEL++ D++FL GC  PTI  ++QD  + RHVKT+E+SLK+K+F
Sbjct:   143 PFDNKGQLKEAFNIRLEELQVLDIKFLFGCAKPTIAVLYQDNKDARHVKTYEVSLKDKDF 202

Query:   863 TKTPWKQDNIEMEASLVIPVPEPLGGAIIIGQESILYHSGKSYVAVAPQIIKSSTIVCYA 922
              + PW Q++++  A L+IPVP PL G +IIG+E+I+Y S  ++ A+ P  I+ S    Y 
Sbjct:   203 VEGPWSQNSLDNGADLLIPVPPPLCGVLIIGEETIVYCSASAFKAI-P--IRPSITKAYG 259

Query:   923 KVDANGERYLLGDLAGRLFXXXXXXXXXXDGTFSVKEPKVELLGE 967
             +VD +G RYLLGD AG +                V   K+ELLGE
Sbjct:   260 RVDVDGSRYLLGDHAGMIHLLVITHEKE-----KVTGLKIELLGE 299

 Score = 595 (214.5 bits), Expect = 1.5e-188, Sum P(2) = 1.5e-188
 Identities = 111/220 (50%), Positives = 159/220 (72%)

Query:  1001 EVEVHNLLIIDQNTFEILHAHQLFPGEYALSLISSKFGEDPNTYFVLGTAVVHPEENEPK 1060
             E E+H + ++D  TFE +  + L   EY  S++S  F ED N Y+ +GTA V PEENEP 
Sbjct:   740 ESEMHFVRLLDDQTFEFMSTYPLDSFEYGCSILSCSFTEDKNVYYCVGTAYVLPEENEPT 799

Query:  1061 QGRIIIFHYDDGKLQQIAEKEIKGACYSMCEFNGKLLASINSTVRLFEWT----NEKELR 1116
             +GRI++F  +DG+LQ IAEKE KGA YS+  FNGKLLA+IN  ++L++W       +EL+
Sbjct:   800 KGRILVFIVEDGRLQLIAEKETKGAVYSLNAFNGKLLAAINQKIQLYKWMLRDDGTRELQ 859

Query:  1117 LECSHFNNIIALFLKVKGDFILVGDLMRSLTLLQYKTMEGSFEEISRDYNPNWMTSIEIL 1176
              EC H  +I+AL+++ +GDFI+VGDLM+S++LL YK  EG+ EE +RDYN NWM+++EIL
Sbjct:   860 SECGHHGHILALYVQTRGDFIVVGDLMKSISLLLYKHEEGAIEERARDYNANWMSAVEIL 919

Query:  1177 DDELFLGAENSYNLFICQKDSAATSDEDRTHLQEVGTVHL 1216
             DD+++LGAEN++NL   +K+S   +DE+R  L+ VG  HL
Sbjct:   920 DDDIYLGAENNFNLLTVKKNSEGATDEERGRLEVVGEYHL 959

 Score = 172 (65.6 bits), Expect = 3.4e-67, Sum P(2) = 3.4e-67
 Identities = 32/62 (51%), Positives = 47/62 (75%)

Query:   625 NFTSSTDLNLVVAKNNRIEIHTVTPEGLRPVKEIFLYGKIAVMKFFRGPTDKKDLLFIIT 684
             NFTS  +LNL+VAK  RIEIH +TP+GL+P+ ++ +YG+IA ++ FR   + +D LFI T
Sbjct:    23 NFTSPQELNLIVAKCTRIEIHLLTPQGLQPMLDVPIYGRIATLELFRPHGEAQDFLFIAT 82

Query:   685 QR 686
             +R
Sbjct:    83 ER 84

 Score = 152 (58.6 bits), Expect = 4.4e-65, Sum P(2) = 4.4e-65
 Identities = 27/56 (48%), Positives = 40/56 (71%)

Query:     1 EGSLRIIRNGIGIEEHACIDLPGIKGIWALSIGSPKNLDNTLVLSFVGHTRVLTLS 56
             +GSLR++RNGIGI E A ++L GIKG+W+L     +  D  LV+SF+  TR+L ++
Sbjct:   376 DGSLRVVRNGIGINEQASVELQGIKGMWSLKSSIDEAFDTFLVVSFISETRILAMN 431

 Score = 43 (20.2 bits), Expect = 1.3e-53, Sum P(2) = 1.3e-53
 Identities = 18/76 (23%), Positives = 27/76 (35%)

Query:   364 SEPAKAQLAAVGLWTDISARLLSLPSLEEVCKEPLGGEIIPRSILMTCFEGHCYLLVALG 423
             + P +  L  V   T I   LL+   L+ +   P+ G I    +     E   +L +A  
Sbjct:    25 TSPQELNLI-VAKCTRIEIHLLTPQGLQPMLDVPIYGRIATLELFRPHGEAQDFLFIATE 83

Query:   424 DGSMFYFSLDPASGRL 439
                      DP S  L
Sbjct:    84 RYKFCVLQWDPESSEL 99

 Score = 40 (19.1 bits), Expect = 6.9e-130, Sum P(2) = 6.9e-130
 Identities = 10/26 (38%), Positives = 16/26 (61%)

Query:   608 EVEVHNLLIIDQNTFERNFTSSTDLN 633
             E E+H + ++D  TFE  F S+  L+
Sbjct:   740 ESEMHFVRLLDDQTFE--FMSTYPLD 763

 Score = 37 (18.1 bits), Expect = 6.1e-05, Sum P(2) = 6.1e-05
 Identities = 5/10 (50%), Positives = 7/10 (70%)

Query:   262 FTSDQQTFYC 271
             FT D+  +YC
Sbjct:   776 FTEDKNVYYC 785


>TAIR|locus:2127368 [details] [associations]
            symbol:DDB1B "damaged DNA binding protein 1B"
            species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM;IEA;IDA]
            [GO:0003684 "damaged DNA binding" evidence=ISS] [GO:0009793 "embryo
            development ending in seed dormancy" evidence=IMP] [GO:0005515
            "protein binding" evidence=IPI] [GO:0005829 "cytosol" evidence=RCA]
            [GO:0006281 "DNA repair" evidence=RCA] [GO:0007062 "sister
            chromatid cohesion" evidence=RCA] [GO:0009880 "embryonic pattern
            specification" evidence=RCA] [GO:0010072 "primary shoot apical
            meristem specification" evidence=RCA] [GO:0010100 "negative
            regulation of photomorphogenesis" evidence=RCA] [GO:0010162 "seed
            dormancy process" evidence=RCA] [GO:0010431 "seed maturation"
            evidence=RCA] [GO:0010564 "regulation of cell cycle process"
            evidence=RCA] [GO:0045595 "regulation of cell differentiation"
            evidence=RCA] [GO:0048366 "leaf development" evidence=RCA]
            [GO:0048608 "reproductive structure development" evidence=RCA]
            [GO:0048825 "cotyledon development" evidence=RCA] [GO:0051301 "cell
            division" evidence=RCA] InterPro:IPR017986 InterPro:IPR004871
            InterPro:IPR015943 Pfam:PF03178 UniPathway:UPA00143 GO:GO:0005634
            EMBL:CP002687 GenomeReviews:CT486007_GR Gene3D:2.130.10.10
            SUPFAM:SSF50978 EMBL:AL161554 GO:GO:0003677 GO:GO:0006281
            GO:GO:0009793 GO:GO:0016567 GO:GO:0009585 EMBL:AL021960
            UniGene:At.32663 eggNOG:NOG247734 HOGENOM:HOG000007241 KO:K10610
            ProtClustDB:CLSN2685347 EMBL:AK220648 EMBL:AK229805 IPI:IPI00536598
            PIR:T04941 RefSeq:NP_193842.1 ProteinModelPortal:O49552 SMR:O49552
            DIP:DIP-46981N IntAct:O49552 STRING:O49552 PaxDb:O49552
            PRIDE:O49552 EnsemblPlants:AT4G21100.1 GeneID:827857
            KEGG:ath:AT4G21100 GeneFarm:4661 TAIR:At4g21100 InParanoid:O49552
            OMA:DRPAVIY PhylomeDB:O49552 Genevestigator:O49552
            GermOnline:AT4G21100 Uniprot:O49552
        Length = 1088

 Score = 1234 (439.4 bits), Expect = 1.3e-182, Sum P(2) = 1.3e-182
 Identities = 245/477 (51%), Positives = 329/477 (68%)

Query:    81 RYLLGDLAGRLFXXXXXXXXXXDGTFSVKEPKVELLGEISIPECLTYLDNGVVFVGSRLG 140
             RYLLGD AG +                V   K+ELLGE SI   ++YLDN VVFVGS  G
Sbjct:   267 RYLLGDHAGLIHLLVITHEKE-----KVTGLKIELLGETSIASSISYLDNAVVFVGSSYG 321

Query:   141 DSQLVKLNRSPDENGTYVSVMESFTNLAPIIDMVVVDLERQGQGQLVTCSGGFKEGSLRI 200
             DSQL+KLN  PD  G+YV ++E + NL PI+D  VVDLERQGQGQ+VTCSG +K+GSLRI
Sbjct:   322 DSQLIKLNLQPDAKGSYVEILEKYVNLGPIVDFCVVDLERQGQGQVVTCSGAYKDGSLRI 381

Query:   201 IRNGIGIEEHACIDLPGIKGIWALSIGSPKNLDNTLVLSFVGHTRVLTLS-GAEVEETEM 259
             +RNGIGI E A ++L GIKG+W+L     +  D  LV+SF+  TR+L ++   E+EETE+
Sbjct:   382 VRNGIGINEQASVELQGIKGMWSLKSSIDEAFDTFLVVSFISETRILAMNIEDELEETEI 441

Query:   260 GGFTSDQQTFYCGNVDPRTVLQVTPSAAILISTESKARVSSWEPPNGKSISVVSCNKNQV 319
              GF S+ QT +C +     ++QVT ++  L+S+ ++   + W+ P G S++V + N +QV
Sbjct:   442 EGFLSEVQTLFCHDAVYNQLVQVTSNSVRLVSSTTRELRNKWDAPAGFSVNVATANASQV 501

Query:   320 LCATGCD-VYYLEVHGSEIKQLAHRALEYEVACLDISPLSNEETSSEPAKAQLAAVGLWT 378
             L ATG   + YLE+    + ++ H  LEYEV+CLDI+P+ +      P  +QLAAVG+WT
Sbjct:   502 LLATGGGHLVYLEIGDGTLTEVKHVLLEYEVSCLDINPIGDN-----PNYSQLAAVGMWT 556

Query:   379 DISARLLSLPSLEEVCKEPLGGEIIPRSILMTCFEGHCYLLVALGDGSMFYFSLDPASGR 438
             DIS R+  LP L  + KE LGGEIIPRS+L+  FEG  YLL ALGDG +  F LD + G+
Sbjct:   557 DISVRIFVLPDLTLITKEELGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFQLDTSCGK 616

Query:   439 LTDKKKVTLGTQPTVLKTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLRQVNHMCSL 498
             L D+KKV+LGT+P  L+TF S S T+VFA SDRP VIYS+N KL++SNVNL++V+HMC  
Sbjct:   617 LRDRKKVSLGTRPITLRTFSSKSATHVFAASDRPAVIYSNNKKLLYSNVNLKEVSHMCPF 676

Query:   499 NAESYPDSLALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTR 555
             N+ ++PDSLA+A +   T GTID+IQKLHIRT+P+GE  RRI +QE ++TF +   R
Sbjct:   677 NSAAFPDSLAIAREGELTIGTIDDIQKLHIRTIPIGEHARRICHQEQTRTFAISCLR 733

 Score = 654 (235.3 bits), Expect = 7.7e-115, Sum P(2) = 7.7e-115
 Identities = 132/285 (46%), Positives = 194/285 (68%)

Query:   684 TQRTDLNLVVAKNNRIEIHTVTPEGLRPVKEIFLYGKIAVMKFFRGPTDKKDLLFIITQR 743
             T   +LNL+VAK+ RIEIH ++P+GL+ + ++ LYG+IA M+ FR   + +D LF+ T+R
Sbjct:    25 TSPQELNLIVAKSTRIEIHLLSPQGLQTILDVPLYGRIATMELFRPHGEAQDFLFVATER 84

Query:   744 YNAMILECRGDIDNLEILTKAHGNVSDRIGKPSENGIIAIIDPEARVIGLRLYNGLFKII 803
             Y   +L+   D ++ E++T+A G+VSDRIG+P++NG I IIDP+ RVIGL LY+GLFK+I
Sbjct:    85 YKFCVLQW--DYESSELITRAMGDVSDRIGRPTDNGQIGIIDPDCRVIGLHLYDGLFKVI 142

Query:   804 PLEKDNFELKASSIRMEELEIQDVQFLHGCQNPTIICIHQD-VNGRHVKTHEISLKEKEF 862
             P +      +A +IR+EEL++ D++FL+GC  PTI  ++QD  + RHVKT+E+SLK+K F
Sbjct:   143 PFDNKGQLKEAFNIRLEELQVLDIKFLYGCTKPTIAVLYQDNKDARHVKTYEVSLKDKNF 202

Query:   863 TKTPWKQDNIEMEASLVIPVPEPLGGAIIIGQESILYHSGKSYVAVAPQIIKSSTIVCYA 922
              + PW Q+N++  A L+IPVP PL G +IIG+E+I+Y S  ++ A+ P  I+ S    Y 
Sbjct:   203 VEGPWSQNNLDNGADLLIPVPSPLCGVLIIGEETIVYCSANAFKAI-P--IRPSITKAYG 259

Query:   923 KVDANGERYLLGDLAGRLFXXXXXXXXXXDGTFSVKEPKVELLGE 967
             +VD +G RYLLGD AG +                V   K+ELLGE
Sbjct:   260 RVDLDGSRYLLGDHAGLIHLLVITHEKE-----KVTGLKIELLGE 299

 Score = 560 (202.2 bits), Expect = 1.3e-182, Sum P(2) = 1.3e-182
 Identities = 105/228 (46%), Positives = 159/228 (69%)

Query:   993 NQPADFNMEVEVHNLLIIDQNTFEILHAHQLFPGEYALSLISSKFGEDPNTYFVLGTAVV 1052
             N+P+    E E H + ++D  +FE L ++ L   E   S++S  F +D N Y+ +GTA V
Sbjct:   734 NEPSA--EESESHFVRLLDAQSFEFLSSYPLDAFECGCSILSCSFTDDKNVYYCVGTAYV 791

Query:  1053 HPEENEPKQGRIIIFHYDDGKLQQIAEKEIKGACYSMCEFNGKLLASINSTVRLFEWT-- 1110
              PEENEP +GRI++F  ++G+LQ I EKE KGA YS+  FNGKLLASIN  ++L++W   
Sbjct:   792 LPEENEPTKGRILVFIVEEGRLQLITEKETKGAVYSLNAFNGKLLASINQKIQLYKWMLR 851

Query:  1111 --NEKELRLECSHFNNIIALFLKVKGDFILVGDLMRSLTLLQYKTMEGSFEEISRDYNPN 1168
                 +EL+ EC H  +I+AL+++ +GDFI VGDLM+S++LL YK  EG+ EE +RDYN N
Sbjct:   852 DDGTRELQSECGHHGHILALYVQTRGDFIAVGDLMKSISLLIYKHEEGAIEERARDYNAN 911

Query:  1169 WMTSIEILDDELFLGAENSYNLFICQKDSAATSDEDRTHLQEVGTVHL 1216
             WMT++EIL+D+++LG +N +N+F  +K++   +DE+R  ++ VG  H+
Sbjct:   912 WMTAVEILNDDIYLGTDNCFNIFTVKKNNEGATDEERARMEVVGEYHI 959

 Score = 170 (64.9 bits), Expect = 4.6e-63, Sum P(2) = 4.6e-63
 Identities = 31/62 (50%), Positives = 47/62 (75%)

Query:   625 NFTSSTDLNLVVAKNNRIEIHTVTPEGLRPVKEIFLYGKIAVMKFFRGPTDKKDLLFIIT 684
             NFTS  +LNL+VAK+ RIEIH ++P+GL+ + ++ LYG+IA M+ FR   + +D LF+ T
Sbjct:    23 NFTSPQELNLIVAKSTRIEIHLLSPQGLQTILDVPLYGRIATMELFRPHGEAQDFLFVAT 82

Query:   685 QR 686
             +R
Sbjct:    83 ER 84

 Score = 153 (58.9 bits), Expect = 2.9e-61, Sum P(2) = 2.9e-61
 Identities = 28/56 (50%), Positives = 40/56 (71%)

Query:     1 EGSLRIIRNGIGIEEHACIDLPGIKGIWALSIGSPKNLDNTLVLSFVGHTRVLTLS 56
             +GSLRI+RNGIGI E A ++L GIKG+W+L     +  D  LV+SF+  TR+L ++
Sbjct:   376 DGSLRIVRNGIGINEQASVELQGIKGMWSLKSSIDEAFDTFLVVSFISETRILAMN 431

 Score = 48 (22.0 bits), Expect = 3.6e-06, Sum P(2) = 3.6e-06
 Identities = 41/181 (22%), Positives = 65/181 (35%)

Query:   262 FTSDQQTFYCGNVDPRTVLQVTPSAAILISTESKARVSSWEPPNGKSI--SVVSCNKNQV 319
             F+S   T      D   V+  + +  +L S  +   VS   P N  +   S+    + ++
Sbjct:   635 FSSKSATHVFAASDRPAVIY-SNNKKLLYSNVNLKEVSHMCPFNSAAFPDSLAIAREGEL 693

Query:   320 LCATGCDVYYLEVHGSEIKQLAHRALEYE-VACLDISPLSNEETSSEPAKAQLAAVGLWT 378
                T  D+  L +    I + A R    E      IS L NE  S+E +++         
Sbjct:   694 TIGTIDDIQKLHIRTIPIGEHARRICHQEQTRTFAISCLRNEP-SAEESESHFV------ 746

Query:   379 DISARLLSLPSLEEVCKEPLGGEIIPRSILMTCFEGHCYLLVALGDGSMFYFSLDPASGR 438
                 RLL   S E +   PL       SIL   F     +   +G   +     +P  GR
Sbjct:   747 ----RLLDAQSFEFLSSYPLDAFECGCSILSCSFTDDKNVYYCVGTAYVLPEENEPTKGR 802

Query:   439 L 439
             +
Sbjct:   803 I 803

 Score = 44 (20.5 bits), Expect = 8.5e-50, Sum P(2) = 8.5e-50
 Identities = 14/44 (31%), Positives = 18/44 (40%)

Query:   378 TDISARLLSLPSLEEVCKEPLGGEIIPRSILMTCFEGHCYLLVA 421
             T I   LLS   L+ +   PL G I    +     E   +L VA
Sbjct:    38 TRIEIHLLSPQGLQTILDVPLYGRIATMELFRPHGEAQDFLFVA 81


>WB|WBGene00010890 [details] [associations]
            symbol:ddb-1 species:6239 "Caenorhabditis elegans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0040010 "positive regulation of growth
            rate" evidence=IMP] [GO:0002119 "nematode larval development"
            evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0000003
            "reproduction" evidence=IMP] [GO:0009792 "embryo development ending
            in birth or egg hatching" evidence=IMP] [GO:0006898
            "receptor-mediated endocytosis" evidence=IMP] [GO:0040035
            "hermaphrodite genitalia development" evidence=IMP] [GO:0030163
            "protein catabolic process" evidence=IMP] [GO:0007276 "gamete
            generation" evidence=IMP] [GO:0005515 "protein binding"
            evidence=IPI] InterPro:IPR004871 Pfam:PF03178 UniPathway:UPA00143
            GO:GO:0005634 GO:GO:0009792 GO:GO:0006898 GO:GO:0005737
            GO:GO:0040010 GO:GO:0002119 GO:GO:0003677 GO:GO:0006281
            GO:GO:0040011 GO:GO:0016567 GO:GO:0007049 GO:GO:0040035
            InterPro:IPR011047 SUPFAM:SSF50998 GO:GO:0030163 GO:GO:0007276
            eggNOG:NOG247734 HOGENOM:HOG000007241 KO:K10610 OMA:CALGDGS
            GeneTree:ENSGT00530000063396 EMBL:Z68507 PIR:A88855 PIR:T23798
            RefSeq:NP_502299.1 HSSP:Q16531 ProteinModelPortal:Q21554
            DIP:DIP-25884N IntAct:Q21554 MINT:MINT-1055778 STRING:Q21554
            PaxDb:Q21554 EnsemblMetazoa:M18.5.1 EnsemblMetazoa:M18.5.2
            GeneID:178156 KEGG:cel:CELE_M18.5 UCSC:M18.5 CTD:178156
            WormBase:M18.5 InParanoid:Q21554 NextBio:899950 Uniprot:Q21554
        Length = 1134

 Score = 939 (335.6 bits), Expect = 1.1e-146, Sum P(2) = 1.1e-146
 Identities = 203/490 (41%), Positives = 304/490 (62%)

Query:    80 ERYLLGDLAGRLFXXXXXXXXXXDGTFSVKEPKVELLGEISIPECLTYLDNGVVFVGSRL 139
             ER+LL D  GRL            G ++VKE +++ LGE SI + + Y+DNGVVFVGSRL
Sbjct:   267 ERFLLSDTDGRLLMLLLNVTESQSG-YTVKEMRIDYLGETSIADSINYIDNGVVFVGSRL 325

Query:   140 GDSQLVKLNRSPDENGTYVSVMESFTNLAPIIDMVVVDLERQGQGQLVTCSGGFKEGSLR 199
             GDSQL++L   P+  G+Y  ++E+++N+ PI DMV+V  E  GQ QLVTC+G  K+GSLR
Sbjct:   326 GDSQLIRLMTEPN-GGSYSVILETYSNIGPIRDMVMV--ESDGQPQLVTCTGADKDGSLR 382

Query:   200 IIRNGIGIEEHACIDLPGIKGIWALSIGSPKNLDNTLVLSFVGHTRVLTLSGAEVEETEM 259
             +IRNGIGI+E A +DL G+ GI+ + + S  N DN +++S    T VL ++G E+E+ ++
Sbjct:   383 VIRNGIGIDELASVDLAGVVGIFPIRLDS--NADNYVIVSLSDETHVLQITGEELEDVKL 440

Query:   260 GGFTSDQQTFYCGNV----DPRTVLQVTPSAAILISTESKARVSSWEPPNGKSISVVSCN 315
                 +D  T +   +    D   +LQ T     L+S+   ++   WEP NG+ IS VS N
Sbjct:   441 LEINTDLPTIFASTLFGPNDSGIILQATEKQIRLMSSSGLSKF--WEPTNGEIISKVSVN 498

Query:   316 --KNQVLCATGCDVYYL-----EVHGSEIKQLAHRALEYEVACLDISPLSNEETSSEPA- 367
                 Q++ A    VY L     E+   +I+  A +  E E+ACLD   LSNE    +P  
Sbjct:   499 AANGQIVLAARDTVYLLTCIVDEMGALDIQLTAEKKFENEIACLD---LSNE--GDDPNN 553

Query:   368 KAQLAAVGLWTDISARLLSLPSLEEVCKEPLGGEIIPRSILMTCFEGHCYLLVALGDGSM 427
             KA    +  W+  +  ++ LP L  VC   L  +IIPRSI+ TC E   YLLVA GDG++
Sbjct:   554 KATFLVLAFWSTFAMEVIQLPDLITVCHTDLPTKIIPRSIIATCIEEVHYLLVAFGDGAL 613

Query:   428 FYFSLDPASGRLTDKKKVTLGTQPTVLKTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNV 487
              Y+  D  +G   + KK  +GT+P  L   R+ +  ++F CSDRP +I+S++ KLVFSNV
Sbjct:   614 VYYVFDIKTGTHGEPKKSNVGTRPPSLHRVRNKNRQHLFVCSDRPVIIFSASKKLVFSNV 673

Query:   488 NLRQVNHMCSLNAESYPDSLALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQ 547
             N++ V+ +CSL++ +Y D L ++  ++  FGT+D+IQK+H+R++P+GE+  RIAYQ+S+ 
Sbjct:   674 NVKLVDTVCSLSSSAYRDCLVISDGNSMVFGTVDDIQKIHVRSIPMGESVLRIAYQKSTS 733

Query:   548 TFGVITTRID 557
             T+GV + R +
Sbjct:   734 TYGVCSNRTE 743

 Score = 515 (186.3 bits), Expect = 1.1e-146, Sum P(2) = 1.1e-146
 Identities = 103/245 (42%), Positives = 159/245 (64%)

Query:   976 MSSLSYIKPGSTKQSTANQPADFNMEVEVHNLLIIDQNTFEILHAHQLFPGEYALSLISS 1035
             ++S S  K  ST+      P +        + +++DQNTF++LH+H+  P E ALS IS 
Sbjct:   757 VTSQSRPKVASTRADMDESPPN-----TTSSFMVLDQNTFQVLHSHEFGPWETALSCISG 811

Query:  1036 KFGEDPNTYFVLGTAVVHPEENEPKQGRIIIFHYDD---GKLQQIAEKEIKGACYSMCEF 1092
             +F  D +TY+V+GT +++P+E E K GRI++F  DD    KL+++ E  ++G+  ++   
Sbjct:   812 QFTNDSSTYYVVGTGLIYPDETETKIGRIVVFEVDDVERSKLRRVHELVVRGSPLAIRIL 871

Query:  1093 NGKLLASINSTVRLFEWTNEKELRLECSHFNNIIALFLKVKGDFILVGDLMRSLTLLQYK 1152
             NGKL+A+INS++RLFEWT +KELRLECS FN++IAL LKV  + + V D+MRS++LL Y+
Sbjct:   872 NGKLVAAINSSIRLFEWTTDKELRLECSSFNHVIALDLKVMNEEVAVADVMRSVSLLSYR 931

Query:  1153 TMEGSFEEISRDYNPNWMTSIEILDDELFLGAENSYNLFICQKDSAAT-SDEDRTHLQEV 1211
              +EG+FEE+++D+N  WM + E +  E  LG E   NLF  + D     +D+ R  L+  
Sbjct:   932 MLEGNFEEVAKDWNSQWMVTCEFITAESILGGEAHLNLFTVEVDKTRPITDDGRYVLEPT 991

Query:  1212 GTVHL 1216
             G  +L
Sbjct:   992 GYWYL 996

 Score = 396 (144.5 bits), Expect = 8.9e-82, Sum P(2) = 8.9e-82
 Identities = 87/289 (30%), Positives = 169/289 (58%)

Query:   684 TQRTDLNLVVAKNNRIEIHTVTPEGLRPVKEIFLYGKIAVMKFFRGPTDKKDLLFIITQR 743
             T   ++NL+VA+ NRI++  V+PEGL+ V EI +YG++  +   +   DK+  L ++T++
Sbjct:    24 TGHENVNLIVARGNRIDVQLVSPEGLKNVCEIPIYGQVLTIALVKCKRDKRHSLIVVTEK 83

Query:   744 YNAMILECRGDIDNLEILTKAHGNVSDRIGKPSENGIIAIIDPEARVIGLRLYNGLFKII 803
             ++  IL  R   D  +++T+A G ++D  G+ ++N + ++      +I +R + G  K+I
Sbjct:    84 WHMAILAYR---DG-KVVTRAAGCIADPTGRATDN-LFSLTIHRNGLIAIRAFEGSVKMI 138

Query:   804 PLEKDNFELKASSIRMEELEIQDVQFLHGCQNPT--IICIHQDVNGRHVKTHEISLKEKE 861
               E    +L+  ++R +   + D +F+   ++    +  I+ D +G+H++  ++++ +KE
Sbjct:   139 QWESGT-DLRHFNVRFDYPNVSDFKFVDTGEDDVYRVAFIYDDDHGKHLQFSDLNMHDKE 197

Query:   862 FTKTPWKQDNIEMEASLVIPVPEPLGGAIIIGQESILYHSGKSYVAVAP---QIIKSSTI 918
             F +T  +Q +I  ++S++IPVP  +GG I++G  S+LY    +   V P    +++++T 
Sbjct:   198 F-RTYSRQASIAADSSVLIPVPHAIGGVIVLGSNSVLYKPNDNLGEVVPYTCSLLENTTF 256

Query:   919 VCYAKVDANGERYLLGDLAGRLFXXXXXXXXXXDGTFSVKEPKVELLGE 967
              C+  VDA+GER+LL D  GRL            G ++VKE +++ LGE
Sbjct:   257 TCHGIVDASGERFLLSDTDGRLLMLLLNVTESQSG-YTVKEMRIDYLGE 304

 Score = 141 (54.7 bits), Expect = 6.5e-55, Sum P(2) = 6.5e-55
 Identities = 24/75 (32%), Positives = 49/75 (65%)

Query:   625 NFTSSTDLNLVVAKNNRIEIHTVTPEGLRPVKEIFLYGKIAVMKFFRGPTDKKDLLFIIT 684
             NFT   ++NL+VA+ NRI++  V+PEGL+ V EI +YG++  +   +   DK+  L ++T
Sbjct:    22 NFTGHENVNLIVARGNRIDVQLVSPEGLKNVCEIPIYGQVLTIALVKCKRDKRHSLIVVT 81

Query:   685 QRTDLNLVVAKNNRI 699
             ++  + ++  ++ ++
Sbjct:    82 EKWHMAILAYRDGKV 96

 Score = 136 (52.9 bits), Expect = 2.2e-54, Sum P(2) = 2.2e-54
 Identities = 28/59 (47%), Positives = 41/59 (69%)

Query:     1 EGSLRIIRNGIGIEEHACIDLPGIKGIWALSIGSPKNLDNTLVLSFVGHTRVLTLSGAE 59
             +GSLR+IRNGIGI+E A +DL G+ GI+ + + S  N DN +++S    T VL ++G E
Sbjct:   378 DGSLRVIRNGIGIDELASVDLAGVVGIFPIRLDS--NADNYVIVSLSDETHVLQITGEE 434

 Score = 46 (21.3 bits), Expect = 6.4e-45, Sum P(2) = 6.4e-45
 Identities = 10/32 (31%), Positives = 20/32 (62%)

Query:   380 ISARLLSLPSLEEVCKEPLGGEIIPRSILMTC 411
             I  +L+S   L+ VC+ P+ G+++  + L+ C
Sbjct:    39 IDVQLVSPEGLKNVCEIPIYGQVLTIA-LVKC 69

 Score = 43 (20.2 bits), Expect = 2.1e-99, Sum P(3) = 2.1e-99
 Identities = 15/59 (25%), Positives = 26/59 (44%)

Query:  1026 GEYALSLISSKF-GEDPNTYFVLGTAVVHPEENEPKQGRIIIFHYDDGKLQQIAEKEIK 1083
             G Y L      + GE P       T V+ PE++  +  + I+F  + G +  I + + K
Sbjct:   984 GRYVLEPTGYWYLGELPKV-MTRSTLVIQPEDSIIQYSQPIMFGTNQGTIGMIVQIDDK 1041

 Score = 38 (18.4 bits), Expect = 2.1e-99, Sum P(3) = 2.1e-99
 Identities = 5/11 (45%), Positives = 10/11 (90%)

Query:   613 NLLIIDQNTFE 623
             + +++DQNTF+
Sbjct:   782 SFMVLDQNTFQ 792


>UNIPROTKB|Q21554 [details] [associations]
            symbol:ddb-1 "DNA damage-binding protein 1" species:6239
            "Caenorhabditis elegans" [GO:0005515 "protein binding"
            evidence=IPI] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0005634
            "nucleus" evidence=ISS] InterPro:IPR004871 Pfam:PF03178
            UniPathway:UPA00143 GO:GO:0005634 GO:GO:0009792 GO:GO:0006898
            GO:GO:0005737 GO:GO:0040010 GO:GO:0002119 GO:GO:0003677
            GO:GO:0006281 GO:GO:0040011 GO:GO:0016567 GO:GO:0007049
            GO:GO:0040035 InterPro:IPR011047 SUPFAM:SSF50998 GO:GO:0030163
            GO:GO:0007276 eggNOG:NOG247734 HOGENOM:HOG000007241 KO:K10610
            OMA:CALGDGS GeneTree:ENSGT00530000063396 EMBL:Z68507 PIR:A88855
            PIR:T23798 RefSeq:NP_502299.1 HSSP:Q16531 ProteinModelPortal:Q21554
            DIP:DIP-25884N IntAct:Q21554 MINT:MINT-1055778 STRING:Q21554
            PaxDb:Q21554 EnsemblMetazoa:M18.5.1 EnsemblMetazoa:M18.5.2
            GeneID:178156 KEGG:cel:CELE_M18.5 UCSC:M18.5 CTD:178156
            WormBase:M18.5 InParanoid:Q21554 NextBio:899950 Uniprot:Q21554
        Length = 1134

 Score = 939 (335.6 bits), Expect = 1.1e-146, Sum P(2) = 1.1e-146
 Identities = 203/490 (41%), Positives = 304/490 (62%)

Query:    80 ERYLLGDLAGRLFXXXXXXXXXXDGTFSVKEPKVELLGEISIPECLTYLDNGVVFVGSRL 139
             ER+LL D  GRL            G ++VKE +++ LGE SI + + Y+DNGVVFVGSRL
Sbjct:   267 ERFLLSDTDGRLLMLLLNVTESQSG-YTVKEMRIDYLGETSIADSINYIDNGVVFVGSRL 325

Query:   140 GDSQLVKLNRSPDENGTYVSVMESFTNLAPIIDMVVVDLERQGQGQLVTCSGGFKEGSLR 199
             GDSQL++L   P+  G+Y  ++E+++N+ PI DMV+V  E  GQ QLVTC+G  K+GSLR
Sbjct:   326 GDSQLIRLMTEPN-GGSYSVILETYSNIGPIRDMVMV--ESDGQPQLVTCTGADKDGSLR 382

Query:   200 IIRNGIGIEEHACIDLPGIKGIWALSIGSPKNLDNTLVLSFVGHTRVLTLSGAEVEETEM 259
             +IRNGIGI+E A +DL G+ GI+ + + S  N DN +++S    T VL ++G E+E+ ++
Sbjct:   383 VIRNGIGIDELASVDLAGVVGIFPIRLDS--NADNYVIVSLSDETHVLQITGEELEDVKL 440

Query:   260 GGFTSDQQTFYCGNV----DPRTVLQVTPSAAILISTESKARVSSWEPPNGKSISVVSCN 315
                 +D  T +   +    D   +LQ T     L+S+   ++   WEP NG+ IS VS N
Sbjct:   441 LEINTDLPTIFASTLFGPNDSGIILQATEKQIRLMSSSGLSKF--WEPTNGEIISKVSVN 498

Query:   316 --KNQVLCATGCDVYYL-----EVHGSEIKQLAHRALEYEVACLDISPLSNEETSSEPA- 367
                 Q++ A    VY L     E+   +I+  A +  E E+ACLD   LSNE    +P  
Sbjct:   499 AANGQIVLAARDTVYLLTCIVDEMGALDIQLTAEKKFENEIACLD---LSNE--GDDPNN 553

Query:   368 KAQLAAVGLWTDISARLLSLPSLEEVCKEPLGGEIIPRSILMTCFEGHCYLLVALGDGSM 427
             KA    +  W+  +  ++ LP L  VC   L  +IIPRSI+ TC E   YLLVA GDG++
Sbjct:   554 KATFLVLAFWSTFAMEVIQLPDLITVCHTDLPTKIIPRSIIATCIEEVHYLLVAFGDGAL 613

Query:   428 FYFSLDPASGRLTDKKKVTLGTQPTVLKTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNV 487
              Y+  D  +G   + KK  +GT+P  L   R+ +  ++F CSDRP +I+S++ KLVFSNV
Sbjct:   614 VYYVFDIKTGTHGEPKKSNVGTRPPSLHRVRNKNRQHLFVCSDRPVIIFSASKKLVFSNV 673

Query:   488 NLRQVNHMCSLNAESYPDSLALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQ 547
             N++ V+ +CSL++ +Y D L ++  ++  FGT+D+IQK+H+R++P+GE+  RIAYQ+S+ 
Sbjct:   674 NVKLVDTVCSLSSSAYRDCLVISDGNSMVFGTVDDIQKIHVRSIPMGESVLRIAYQKSTS 733

Query:   548 TFGVITTRID 557
             T+GV + R +
Sbjct:   734 TYGVCSNRTE 743

 Score = 515 (186.3 bits), Expect = 1.1e-146, Sum P(2) = 1.1e-146
 Identities = 103/245 (42%), Positives = 159/245 (64%)

Query:   976 MSSLSYIKPGSTKQSTANQPADFNMEVEVHNLLIIDQNTFEILHAHQLFPGEYALSLISS 1035
             ++S S  K  ST+      P +        + +++DQNTF++LH+H+  P E ALS IS 
Sbjct:   757 VTSQSRPKVASTRADMDESPPN-----TTSSFMVLDQNTFQVLHSHEFGPWETALSCISG 811

Query:  1036 KFGEDPNTYFVLGTAVVHPEENEPKQGRIIIFHYDD---GKLQQIAEKEIKGACYSMCEF 1092
             +F  D +TY+V+GT +++P+E E K GRI++F  DD    KL+++ E  ++G+  ++   
Sbjct:   812 QFTNDSSTYYVVGTGLIYPDETETKIGRIVVFEVDDVERSKLRRVHELVVRGSPLAIRIL 871

Query:  1093 NGKLLASINSTVRLFEWTNEKELRLECSHFNNIIALFLKVKGDFILVGDLMRSLTLLQYK 1152
             NGKL+A+INS++RLFEWT +KELRLECS FN++IAL LKV  + + V D+MRS++LL Y+
Sbjct:   872 NGKLVAAINSSIRLFEWTTDKELRLECSSFNHVIALDLKVMNEEVAVADVMRSVSLLSYR 931

Query:  1153 TMEGSFEEISRDYNPNWMTSIEILDDELFLGAENSYNLFICQKDSAAT-SDEDRTHLQEV 1211
              +EG+FEE+++D+N  WM + E +  E  LG E   NLF  + D     +D+ R  L+  
Sbjct:   932 MLEGNFEEVAKDWNSQWMVTCEFITAESILGGEAHLNLFTVEVDKTRPITDDGRYVLEPT 991

Query:  1212 GTVHL 1216
             G  +L
Sbjct:   992 GYWYL 996

 Score = 396 (144.5 bits), Expect = 8.9e-82, Sum P(2) = 8.9e-82
 Identities = 87/289 (30%), Positives = 169/289 (58%)

Query:   684 TQRTDLNLVVAKNNRIEIHTVTPEGLRPVKEIFLYGKIAVMKFFRGPTDKKDLLFIITQR 743
             T   ++NL+VA+ NRI++  V+PEGL+ V EI +YG++  +   +   DK+  L ++T++
Sbjct:    24 TGHENVNLIVARGNRIDVQLVSPEGLKNVCEIPIYGQVLTIALVKCKRDKRHSLIVVTEK 83

Query:   744 YNAMILECRGDIDNLEILTKAHGNVSDRIGKPSENGIIAIIDPEARVIGLRLYNGLFKII 803
             ++  IL  R   D  +++T+A G ++D  G+ ++N + ++      +I +R + G  K+I
Sbjct:    84 WHMAILAYR---DG-KVVTRAAGCIADPTGRATDN-LFSLTIHRNGLIAIRAFEGSVKMI 138

Query:   804 PLEKDNFELKASSIRMEELEIQDVQFLHGCQNPT--IICIHQDVNGRHVKTHEISLKEKE 861
               E    +L+  ++R +   + D +F+   ++    +  I+ D +G+H++  ++++ +KE
Sbjct:   139 QWESGT-DLRHFNVRFDYPNVSDFKFVDTGEDDVYRVAFIYDDDHGKHLQFSDLNMHDKE 197

Query:   862 FTKTPWKQDNIEMEASLVIPVPEPLGGAIIIGQESILYHSGKSYVAVAP---QIIKSSTI 918
             F +T  +Q +I  ++S++IPVP  +GG I++G  S+LY    +   V P    +++++T 
Sbjct:   198 F-RTYSRQASIAADSSVLIPVPHAIGGVIVLGSNSVLYKPNDNLGEVVPYTCSLLENTTF 256

Query:   919 VCYAKVDANGERYLLGDLAGRLFXXXXXXXXXXDGTFSVKEPKVELLGE 967
              C+  VDA+GER+LL D  GRL            G ++VKE +++ LGE
Sbjct:   257 TCHGIVDASGERFLLSDTDGRLLMLLLNVTESQSG-YTVKEMRIDYLGE 304

 Score = 141 (54.7 bits), Expect = 6.5e-55, Sum P(2) = 6.5e-55
 Identities = 24/75 (32%), Positives = 49/75 (65%)

Query:   625 NFTSSTDLNLVVAKNNRIEIHTVTPEGLRPVKEIFLYGKIAVMKFFRGPTDKKDLLFIIT 684
             NFT   ++NL+VA+ NRI++  V+PEGL+ V EI +YG++  +   +   DK+  L ++T
Sbjct:    22 NFTGHENVNLIVARGNRIDVQLVSPEGLKNVCEIPIYGQVLTIALVKCKRDKRHSLIVVT 81

Query:   685 QRTDLNLVVAKNNRI 699
             ++  + ++  ++ ++
Sbjct:    82 EKWHMAILAYRDGKV 96

 Score = 136 (52.9 bits), Expect = 2.2e-54, Sum P(2) = 2.2e-54
 Identities = 28/59 (47%), Positives = 41/59 (69%)

Query:     1 EGSLRIIRNGIGIEEHACIDLPGIKGIWALSIGSPKNLDNTLVLSFVGHTRVLTLSGAE 59
             +GSLR+IRNGIGI+E A +DL G+ GI+ + + S  N DN +++S    T VL ++G E
Sbjct:   378 DGSLRVIRNGIGIDELASVDLAGVVGIFPIRLDS--NADNYVIVSLSDETHVLQITGEE 434

 Score = 46 (21.3 bits), Expect = 6.4e-45, Sum P(2) = 6.4e-45
 Identities = 10/32 (31%), Positives = 20/32 (62%)

Query:   380 ISARLLSLPSLEEVCKEPLGGEIIPRSILMTC 411
             I  +L+S   L+ VC+ P+ G+++  + L+ C
Sbjct:    39 IDVQLVSPEGLKNVCEIPIYGQVLTIA-LVKC 69

 Score = 43 (20.2 bits), Expect = 2.1e-99, Sum P(3) = 2.1e-99
 Identities = 15/59 (25%), Positives = 26/59 (44%)

Query:  1026 GEYALSLISSKF-GEDPNTYFVLGTAVVHPEENEPKQGRIIIFHYDDGKLQQIAEKEIK 1083
             G Y L      + GE P       T V+ PE++  +  + I+F  + G +  I + + K
Sbjct:   984 GRYVLEPTGYWYLGELPKV-MTRSTLVIQPEDSIIQYSQPIMFGTNQGTIGMIVQIDDK 1041

 Score = 38 (18.4 bits), Expect = 2.1e-99, Sum P(3) = 2.1e-99
 Identities = 5/11 (45%), Positives = 10/11 (90%)

Query:   613 NLLIIDQNTFE 623
             + +++DQNTF+
Sbjct:   782 SFMVLDQNTFQ 792


>DICTYBASE|DDB_G0286013 [details] [associations]
            symbol:repE "UV-damaged DNA binding protein1"
            species:44689 "Dictyostelium discoideum" [GO:0005634 "nucleus"
            evidence=IEA;ISS;IDA] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0006974 "response to DNA damage stimulus" evidence=IEA;IEP]
            [GO:0006289 "nucleotide-excision repair" evidence=ISS] [GO:0003684
            "damaged DNA binding" evidence=ISS] [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
            [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003677 "DNA binding"
            evidence=IEA] [GO:0016567 "protein ubiquitination" evidence=IEA]
            InterPro:IPR017986 InterPro:IPR004871 Pfam:PF03178
            UniPathway:UPA00143 dictyBase:DDB_G0286013 GO:GO:0005634
            GO:GO:0005737 GenomeReviews:CM000153_GR SUPFAM:SSF50978
            GO:GO:0003684 GO:GO:0016567 EMBL:AAFI02000085 GO:GO:0006289
            eggNOG:NOG247734 KO:K10610 OMA:CALGDGS EMBL:U50042 PIR:S71092
            RefSeq:XP_637896.2 STRING:B0M0P5 EnsemblProtists:DDB0191144
            GeneID:8625406 KEGG:ddi:DDB_G0286013 ProtClustDB:CLSZ2430134
            Uniprot:B0M0P5
        Length = 1181

 Score = 730 (262.0 bits), Expect = 4.5e-131, Sum P(4) = 4.5e-131
 Identities = 150/335 (44%), Positives = 217/335 (64%)

Query:   225 SIGSPKNLDNTLVLSFVGHTRVLTLSGAEVEETEMGGFTSDQQTFYCGNVDPRTVL-QVT 283
             S G   + D  L+ SF+  T+VL+  G E+EETE  G  S+  T YCG +D   +L Q+T
Sbjct:   466 SNGITDSKDRYLITSFIECTKVLSFQGEEIEETEFEGLESNCSTLYCGTIDKLNLLIQIT 525

Query:   284 PSAAILISTESKARVSSWEPPNGKSISVVSCNKNQVLCATGCDVYYLEVHGSE--IKQLA 341
               +  LI + +  RVS W     + I++VS N++Q++ +    + Y +++ S   I+ + 
Sbjct:   526 NVSINLIDSNTFKRVSQWNVEPSRRINLVSTNQDQIVLSIDKSLLYFQINSSNKSIQLVK 585

Query:   342 HRALEYEVACLDISPLSNEETSSEPAKAQLAAVGLWTDISARLLSLPSLEEVCKEPLGGE 401
                L +E++C+DISP      S    K+QL +VGLW DI+ R+  LP+LEE+ KEPLGGE
Sbjct:   586 EIELPHEISCIDISPFD----SFMDTKSQLVSVGLWNDITLRIFKLPTLEEIWKEPLGGE 641

Query:   402 IIPRSILMTCFEGHCYLLVALGDGSMFYFSLDPASGRLTDKKKVTLGTQPTVLKTFRSLS 461
             I+PRSILM  F+   Y+  +LGDG +F F  D +S +L DK+K+TLGTQP +LK F+  +
Sbjct:   642 ILPRSILMISFDSIDYIFCSLGDGHLFKFQFDFSSFKLFDKRKLTLGTQPIILKKFKLKN 701

Query:   462 TTNVFACSDRPTVIYSSNHKLVFSNVNLRQVNHMCSLNAESYPDSLALATDSTFTFGTID 521
             T N+FA SDRPTVIYS N KL +S VNL+ V ++ S N++ +P+S+A+AT ++ T GTID
Sbjct:   702 TINIFAISDRPTVIYSHNKKLFYSVVNLKDVTNVTSFNSDGFPNSMAIATTNSLTIGTID 761

Query:   522 EIQKLHIRTVPLGEAP-RRIAYQESSQTFGVITTR 555
             EIQKLHI+T+PL E   RRI + E    + VIT +
Sbjct:   762 EIQKLHIKTIPLNEEMGRRIVHLEDHSCYAVITVK 796

 Score = 371 (135.7 bits), Expect = 4.5e-131, Sum P(4) = 4.5e-131
 Identities = 77/155 (49%), Positives = 104/155 (67%)

Query:    81 RYLLGDLAGRLFXXXXXXXXXXDGTFSVKEPKVELLGEISIPECLTYLDNGVVFVGSRLG 140
             R+L GD  GRL                V E K E LG ISIP  ++YLD+GVV++GS  G
Sbjct:   305 RFLFGDHFGRLSVLVLIHQQQ-----KVMELKFEQLGRISIPSSISYLDSGVVYIGSSSG 359

Query:   141 DSQLVKLNRSPDEN-GTYVSVMESFTNLAPIIDMVVVDLERQGQGQLVTCSGGFKEGSLR 199
             DSQL++LN   D+   +YV+ +E+FTN+ P++D  VVD E+QGQ Q+VTCSG +++GSLR
Sbjct:   360 DSQLIRLNTEKDQTTDSYVTYLEAFTNIGPVVDFCVVDAEKQGQAQIVTCSGTYRDGSLR 419

Query:   200 IIRNGIGIEEHACIDLPGIKGIWALSIGSPKNLDN 234
             IIRNGIGI E A I+L GIKGI+ ++  +  N +N
Sbjct:   420 IIRNGIGIAEQASIELEGIKGIFPINNNNNNNNNN 454

 Score = 327 (120.2 bits), Expect = 1.6e-50, Sum P(3) = 1.6e-50
 Identities = 92/318 (28%), Positives = 157/318 (49%)

Query:   625 NFTSSTDLNLVVAKNNRIEIHTVTPEGLRPVKEIFLYGKIAVMKFFRGPTDKKDLLFIIT 684
             NFT   D NL+++K  +IEI  +  +GL+P+ ++ +YG+I+V+K F     K+D LFI T
Sbjct:    21 NFTGPNDKNLIISKCTKIEIFLMDQDGLKPMFDVNIYGRISVLKLFSVAGSKQDYLFIST 80

Query:   685 QRTDLNLVVAKNNRIEIHTVTPEGLRPVKEIFLYGKIAVMKFFRGPTDKKDLLFIITQRY 744
             +     ++     + EI T               G+         PT+   L  II    
Sbjct:    81 ESFKFCILAYDYEKKEIITKASGNAEDT-----IGR---------PTEAGQL-GIIDPDG 125

Query:   745 NAMILECRGDIDNLEILTKAHGNVSDRIGKPSENGIIAIIDPEARVIGLRLYNGLFKIIP 804
               + L     +  L+++T  + N  ++I   + N      +         + N  F I  
Sbjct:   126 RIVALHLYEGL--LKLITLDNNNTPNKINNNNNNNNNNNNNNNNNNNN-NINNNNFNINN 182

Query:   805 LEKDN-FELKASSIRMEELEIQDVQFLHGCQNPTIICIHQDVNG-RHVKTHEISLKEKEF 862
                ++  +   +++R+EEL++ D+ FL+GC+ PTI  + +D    +H+ T+EIS K+ E 
Sbjct:   183 NNNNSPIQKNVNNVRLEELQVLDMTFLYGCKVPTIAVLFKDTKDEKHISTYEISSKDTEL 242

Query:   863 TKTPWKQDNIEMEASLVIPVPEPLGGAIIIGQESILYHSGKSYVAVAPQIIKSSTIVCYA 922
                PW Q N+ + +SL++PVP  LGG +++    I Y +GK   +VA    K    + + 
Sbjct:   243 VVGPWSQSNVGVYSSLLVPVP--LGGVLVVADNGITYLNGKVTRSVAVSYTK---FLAFT 297

Query:   923 KVDANGERYLLGDLAGRL 940
             +VD +G R+L GD  GRL
Sbjct:   298 RVDKDGSRFLFGDHFGRL 315

 Score = 243 (90.6 bits), Expect = 4.5e-131, Sum P(4) = 4.5e-131
 Identities = 52/160 (32%), Positives = 98/160 (61%)

Query:  1071 DGKLQQIAEKEIKGACYSMCEFNGKLLASINSTVRLFEWTNEKE-----LRLECSHFNNI 1125
             +GKL  + E + + + Y +  FNG+L+A+++  +    +T+ KE     +  E  H  + 
Sbjct:   903 NGKLTLLEEIKFRSSVYFLLSFNGRLIAAVHKRLFSIRYTHSKEKNCKVISSESVHKGHT 962

Query:  1126 IALFLKVKGDFILVGDLMRSLTLLQYKTMEGSFEEISRDYNPNWMTSIEILDDELFLGAE 1185
             + L L  +G FILVGD+M+S++LL  ++ +GS E+I+R+  P W+ S+ +++D+ F+GAE
Sbjct:   963 MILKLASRGHFILVGDMMKSMSLLVEQS-DGSLEQIARNPQPIWIRSVAMINDDYFIGAE 1021

Query:  1186 NSYNLFICQKDSAATSDEDRTHLQEVGTVHLVGDGLVQCR 1225
              S N  + +K++ +T++ +R  L  VG  H +G+ +   R
Sbjct:  1022 ASNNFIVVKKNNDSTNELERELLDSVGHYH-IGESINSMR 1060

 Score = 110 (43.8 bits), Expect = 1.1e-103, Sum P(4) = 1.1e-103
 Identities = 23/40 (57%), Positives = 30/40 (75%)

Query:     1 EGSLRIIRNGIGIEEHACIDLPGIKGIWALSIGSPKNLDN 40
             +GSLRIIRNGIGI E A I+L GIKGI+ ++  +  N +N
Sbjct:   415 DGSLRIIRNGIGIAEQASIELEGIKGIFPINNNNNNNNNN 454

 Score = 103 (41.3 bits), Expect = 4.5e-131, Sum P(4) = 4.5e-131
 Identities = 23/66 (34%), Positives = 40/66 (60%)

Query:  1003 EVHNLLIIDQNTFEILHAHQLFPGEYALSLISSKF-GEDPNTYFVLGTAVVHPEENEPKQ 1061
             EV  + I +  TFE++ +++L P E   S+   KF G+D NTY  +GT++  P ++    
Sbjct:   814 EVSYIRIYNDQTFELISSYKLDPYEMGWSITPCKFAGDDVNTYLAVGTSINTPIKSS--- 870

Query:  1062 GRIIIF 1067
             GR+++F
Sbjct:   871 GRVLLF 876

 Score = 59 (25.8 bits), Expect = 9.4e-26, Sum P(2) = 9.4e-26
 Identities = 32/120 (26%), Positives = 52/120 (43%)

Query:  1109 WTNEKELRLECSHFNNIIALFLKVK--GDFILVGDLMRSLTLL-----QYKTMEGSFEEI 1161
             + N K  R     +   +A F +V   G   L GD    L++L     Q K ME  FE++
Sbjct:   277 YLNGKVTRSVAVSYTKFLA-FTRVDKDGSRFLFGDHFGRLSVLVLIHQQQKVMELKFEQL 335

Query:  1162 SRDYNPNWMTSIEILDDEL-FLGAENSYNLFI-CQKDSAATSDEDRTHLQEVGTVHLVGD 1219
              R   P+   SI  LD  + ++G+ +  +  I    +   T+D   T+L+    +  V D
Sbjct:   336 GRISIPS---SISYLDSGVVYIGSSSGDSQLIRLNTEKDQTTDSYVTYLEAFTNIGPVVD 392

 Score = 51 (23.0 bits), Expect = 9.4e-56, Sum P(4) = 9.4e-56
 Identities = 15/43 (34%), Positives = 24/43 (55%)

Query:   606 NMEVEVHNLLI--IDQNTFER----NFTSSTDLNLVVAKNNRI 642
             N+ +++ N+ I  ID NTF+R    N   S  +NLV    ++I
Sbjct:   519 NLLIQITNVSINLIDSNTFKRVSQWNVEPSRRINLVSTNQDQI 561

 Score = 46 (21.3 bits), Expect = 5.4e-97, Sum P(4) = 5.4e-97
 Identities = 11/29 (37%), Positives = 16/29 (55%)

Query:    31 SIGSPKNLDNTLVLSFVGHTRVLTLSGAE 59
             S G   + D  L+ SF+  T+VL+  G E
Sbjct:   466 SNGITDSKDRYLITSFIECTKVLSFQGEE 494


>UNIPROTKB|B4DG00 [details] [associations]
            symbol:DDB1 "cDNA FLJ52436, highly similar to DNA
            damage-binding protein 1" species:9606 "Homo sapiens" [GO:0003676
            "nucleic acid binding" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] InterPro:IPR004871 InterPro:IPR015943 Pfam:PF03178
            GO:GO:0005634 Gene3D:2.130.10.10 GO:GO:0003676 EMBL:AP003108
            UniGene:Hs.290758 HGNC:HGNC:2717 ChiTaRS:DDB1 EMBL:AP003037
            EMBL:AK294341 IPI:IPI00909177 SMR:B4DG00 STRING:B4DG00
            Ensembl:ENST00000450997 UCSC:uc010rle.1 HOGENOM:HOG000069916
            HOVERGEN:HBG102355 Uniprot:B4DG00
        Length = 451

 Score = 924 (330.3 bits), Expect = 9.1e-109, Sum P(2) = 9.1e-109
 Identities = 174/245 (71%), Positives = 206/245 (84%)

Query:   972 PVVEMSSLSYIKPGSTKQSTANQPADFNMEVEVHNLLIIDQNTFEILHAHQLFPGEYALS 1031
             P    SS+S  K  S+  STA     F  EVEVHNLLIIDQ+TFE+LHAHQ    EYALS
Sbjct:    69 PKALSSSVSSSKLFSS--STAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALS 126

Query:  1032 LISSKFGEDPNTYFVLGTAVVHPEENEPKQGRIIIFHYDDGKLQQIAEKEIKGACYSMCE 1091
             L+S K G+DPNTYF++GTA+V+PEE EPKQGRI++F Y DGKLQ +AEKE+KGA YSM E
Sbjct:   127 LVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVE 186

Query:  1092 FNGKLLASINSTVRLFEWTNEKELRLECSHFNNIIALFLKVKGDFILVGDLMRSLTLLQY 1151
             FNGKLLASINSTVRL+EWT EKELR EC+H+NNI+AL+LK KGDFILVGDLMRS+ LL Y
Sbjct:   187 FNGKLLASINSTVRLYEWTTEKELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAY 246

Query:  1152 KTMEGSFEEISRDYNPNWMTSIEILDDELFLGAENSYNLFICQKDSAATSDEDRTHLQEV 1211
             K MEG+FEEI+RD+NPNWM+++EILDD+ FLGAEN++NLF+CQKDSAAT+DE+R HLQEV
Sbjct:   247 KPMEGNFEEIARDFNPNWMSAVEILDDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEV 306

Query:  1212 GTVHL 1216
             G  HL
Sbjct:   307 GLFHL 311

 Score = 171 (65.3 bits), Expect = 9.1e-109, Sum P(2) = 9.1e-109
 Identities = 32/47 (68%), Positives = 41/47 (87%)

Query:   625 NFTSSTDLNLVVAKNNRIEIHTVTPEGLRPVKEIFLYGKIAVMKFFR 671
             +FTS+ DLNL++AKN R+EI+ VT EGLRPVKE+ +YGKIAVM+ FR
Sbjct:    22 HFTSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGKIAVMELFR 68

 Score = 158 (60.7 bits), Expect = 2.1e-107, Sum P(2) = 2.1e-107
 Identities = 30/45 (66%), Positives = 37/45 (82%)

Query:   684 TQRTDLNLVVAKNNRIEIHTVTPEGLRPVKEIFLYGKIAVMKFFR 728
             T   DLNL++AKN R+EI+ VT EGLRPVKE+ +YGKIAVM+ FR
Sbjct:    24 TSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGKIAVMELFR 68


>UNIPROTKB|F1M680 [details] [associations]
            symbol:Ddb1 "DNA damage-binding protein 1" species:10116
            "Rattus norvegicus" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            InterPro:IPR004871 InterPro:IPR015943 Pfam:PF03178 RGD:621889
            GO:GO:0005634 Gene3D:2.130.10.10 GO:GO:0003676 IPI:IPI00950036
            Ensembl:ENSRNOT00000063867 ArrayExpress:F1M680 Uniprot:F1M680
        Length = 600

 Score = 923 (330.0 bits), Expect = 1.1e-92, P = 1.1e-92
 Identities = 173/240 (72%), Positives = 205/240 (85%)

Query:   977 SSLSYIKPGSTKQSTANQPADFNMEVEVHNLLIIDQNTFEILHAHQLFPGEYALSLISSK 1036
             SS+S  K  S+  STA     F  EVEVHNLLIIDQ+TFE+LHAHQ    EYALSL+S K
Sbjct:   222 SSVSSSKLFSS--STAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCK 279

Query:  1037 FGEDPNTYFVLGTAVVHPEENEPKQGRIIIFHYDDGKLQQIAEKEIKGACYSMCEFNGKL 1096
              G+DPNTYF++GTA+V+PEE EPKQGRI++F Y DGKLQ +AEKE+KGA YSM EFNGKL
Sbjct:   280 LGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEFNGKL 339

Query:  1097 LASINSTVRLFEWTNEKELRLECSHFNNIIALFLKVKGDFILVGDLMRSLTLLQYKTMEG 1156
             LASINSTVRL+EWT EKELR EC+H+NNI+AL+LK KGDFILVGDLMRS+ LL YK MEG
Sbjct:   340 LASINSTVRLYEWTTEKELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEG 399

Query:  1157 SFEEISRDYNPNWMTSIEILDDELFLGAENSYNLFICQKDSAATSDEDRTHLQEVGTVHL 1216
             +FEEI+RD+NPNWM+++EILDD+ FLGAEN++NLF+CQKDSAAT+DE+R HLQEVG  HL
Sbjct:   400 NFEEIARDFNPNWMSAVEILDDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFHL 459

 Score = 658 (236.7 bits), Expect = 1.2e-63, P = 1.2e-63
 Identities = 154/309 (49%), Positives = 196/309 (63%)

Query:   417 YLLVALGDGSMFYFSLDPASGRLTDKKKVTLGTQPTVLKTFRSLSTTNVFACSDRPTVIY 476
             YLL ALGDG++FYF L+  +G L+D+KKVTLGTQPTVL+TFRSLSTTNVFACSDRPTVIY
Sbjct:    60 YLLCALGDGALFYFGLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIY 119

Query:   477 SSNHKLVFSNVNLRQVNHMCSLNAESYPDSLALATDSTFTFGTIDEIQKLHIRTVPLGEA 536
             SSNHKLVFSNVNL++VN+MC LN++ YPDSLALA +ST T GTIDEIQKLHIRTVPL E+
Sbjct:   120 SSNHKLVFSNVNLKEVNYMCPLNSDGYPDSLALANNSTLTIGTIDEIQKLHIRTVPLYES 179

Query:   537 PRRIAYQESSQTFGVITTRIDIQEADG-STPVRPXXXXXXXXXXXXXXXXXXYIKPGSTK 595
             PR+I YQE SQ FGV+++RI++Q+  G +T +RP                          
Sbjct:   180 PRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKLFS-------- 231

Query:   596 QSTANQPADFNMEVEVHNLLIIDQNTFE----RNFTSST-DLNLVVAK-----NNRIEIH 645
              STA     F  EVEVHNLLIIDQ+TFE      F  +   L+LV  K     N    + 
Sbjct:   232 SSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVG 291

Query:   646 T--VTPEGLRPVKEIFLYGKIAVMKFFRGPTD---KKDLLFIITQRTDLN--LVVAKNNR 698
             T  V PE   P K+    G+I V ++  G      +K++   +    + N  L+ + N+ 
Sbjct:   292 TAMVYPEEAEP-KQ----GRIVVFQYSDGKLQTVAEKEVKGAVYSMVEFNGKLLASINST 346

Query:   699 IEIHTVTPE 707
             + ++  T E
Sbjct:   347 VRLYEWTTE 355


>UNIPROTKB|F5H6C5 [details] [associations]
            symbol:DDB1 "DNA damage-binding protein 1" species:9606
            "Homo sapiens" [GO:0016055 "Wnt receptor signaling pathway"
            evidence=IEA] GO:GO:0016055 GO:GO:0003684 EMBL:AP003108
            HGNC:HGNC:2717 ChiTaRS:DDB1 EMBL:AP003037 IPI:IPI00909008
            ProteinModelPortal:F5H6C5 SMR:F5H6C5 Ensembl:ENST00000535967
            ArrayExpress:F5H6C5 Bgee:F5H6C5 Uniprot:F5H6C5
        Length = 272

 Score = 882 (315.5 bits), Expect = 2.5e-88, P = 2.5e-88
 Identities = 174/277 (62%), Positives = 211/277 (76%)

Query:   161 MESFTNLAPIIDMVVVDLERQGQGQLVTCSGGFKEGSLRIIRNGIGIEEHACIDLPGIKG 220
             ME+FTNL PI+DM VVDLERQGQGQLVTCSG FKEGSLRIIRNGIGI EHA IDLPGIKG
Sbjct:     1 METFTNLGPIVDMCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDLPGIKG 60

Query:   221 IWALSIGSPKNLDNTLVLSFVGHTRVLTLSGAEVEETEMGGFTSDQQTFYCGNVDPRTVL 280
             +W L     +  D+TLVLSFVG TRVL L+G EVEETE+ GF  DQQTF+CGNV  + ++
Sbjct:    61 LWPLRSDPNRETDDTLVLSFVGQTRVLMLNGEEVEETELMGFVDDQQTFFCGNVAHQQLI 120

Query:   281 QVTPSAAILISTESKARVSSWEPPNGKSISVVSCNKNQVLCATGCDVYYLEVHGSEIKQL 340
             Q+T ++  L+S E KA VS W+ P  K+ISV SCN +QV+ A G  +YYL++H  E++Q+
Sbjct:   121 QITSASVRLVSQEPKALVSEWKEPQAKNISVASCNSSQVVVAVGRALYYLQIHPQELRQI 180

Query:   341 AHRALEYEVACLDISPLSNEETSSEPAKAQLAAVGLWTDISARLLSLPSLEEVCKEPLGG 400
             +H  +E+EVACLDI+PL +    S P    L A+GLWTDISAR+L LPS E + KE LGG
Sbjct:   181 SHTEMEHEVACLDITPLGDSNGLS-P----LCAIGLWTDISARILKLPSFELLHKEMLGG 235

Query:   401 EIIPRSILMTCFEGHCYLLVALGDGSMFYFSLDPASG 437
             EIIPRSILMT FE   YLL ALGDG++FYF L+  +G
Sbjct:   236 EIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETG 272

 Score = 209 (78.6 bits), Expect = 1.4e-15, P = 1.4e-15
 Identities = 45/68 (66%), Positives = 49/68 (72%)

Query:     1 EGSLRIIRNGIGIEEHACIDLPGIKGIWALSIGSPKNLDNTLVLSFVGHTRVLTLSGAEW 60
             EGSLRIIRNGIGI EHA IDLPGIKG+W L     +  D+TLVLSFVG TRVL L+G E 
Sbjct:    35 EGSLRIIRNGIGIHEHASIDLPGIKGLWPLRSDPNRETDDTLVLSFVGQTRVLMLNGEEV 94

Query:    61 GFHLLRGF 68
                 L GF
Sbjct:    95 EETELMGF 102


>UNIPROTKB|F5H581 [details] [associations]
            symbol:DDB1 "DNA damage-binding protein 1" species:9606
            "Homo sapiens" [GO:0016055 "Wnt receptor signaling pathway"
            evidence=IEA] GO:GO:0016055 GO:GO:0003684 EMBL:AP003108
            HGNC:HGNC:2717 ChiTaRS:DDB1 EMBL:AP003037 IPI:IPI00909251
            ProteinModelPortal:F5H581 SMR:F5H581 Ensembl:ENST00000535147
            ArrayExpress:F5H581 Bgee:F5H581 Uniprot:F5H581
        Length = 267

 Score = 854 (305.7 bits), Expect = 2.4e-85, P = 2.4e-85
 Identities = 177/280 (63%), Positives = 208/280 (74%)

Query:   345 LEYEVACLDISPLSNEETSSEPAKAQLAAVGLWTDISARLLSLPSLEEVCKEPLGGEIIP 404
             +E+EVACLDI+PL +    S P    L A+GLWTDISAR+L LPS E + KE LGGEIIP
Sbjct:     1 MEHEVACLDITPLGDSNGLS-P----LCAIGLWTDISARILKLPSFELLHKEMLGGEIIP 55

Query:   405 RSILMTCFEGHCYLLVALGDGSMFYFSLDPASGRLTDKKKVTLGTQPTVLKTFRSLSTTN 464
             RSILMT FE   YLL ALGDG++FYF L+  +G L+D+KKVTLGTQPTVL+TFRSLSTTN
Sbjct:    56 RSILMTTFESSHYLLCALGDGALFYFGLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTN 115

Query:   465 VFACSDRPTVIYSSNHKLVFSNVNLRQVNHMCSLNAESYPDSLALATDSTFTFGTIDEIQ 524
             VFACSDRPTVIYSSNHKLVFSNVNL++VN+MC LN++ YPDSLALA +ST T GTIDEIQ
Sbjct:   116 VFACSDRPTVIYSSNHKLVFSNVNLKEVNYMCPLNSDGYPDSLALANNSTLTIGTIDEIQ 175

Query:   525 KLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQEADG-STPVRPXXXXXXXXXXXXXX 583
             KLHIRTVPL E+PR+I YQE SQ FGV+++RI++Q+  G +T +RP              
Sbjct:   176 KLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSS 235

Query:   584 XXXXYIKPGSTKQSTANQPADFNMEVEVHNLLIIDQNTFE 623
                          STA     F  EVEVHNLLIIDQ+TFE
Sbjct:   236 KLFS--------SSTAPHETSFGEEVEVHNLLIIDQHTFE 267


>UNIPROTKB|F5H775 [details] [associations]
            symbol:DDB1 "DNA damage-binding protein 1" species:9606
            "Homo sapiens" [GO:0016055 "Wnt receptor signaling pathway"
            evidence=IEA] GO:GO:0016055 GO:GO:0003684 EMBL:AP003108
            HGNC:HGNC:2717 ChiTaRS:DDB1 EMBL:AP003037 IPI:IPI01015574
            ProteinModelPortal:F5H775 SMR:F5H775 Ensembl:ENST00000537877
            ArrayExpress:F5H775 Bgee:F5H775 Uniprot:F5H775
        Length = 240

 Score = 790 (283.2 bits), Expect = 5.0e-78, P = 5.0e-78
 Identities = 155/244 (63%), Positives = 192/244 (78%)

Query:   249 LSGAEVEETEMGGFTSDQQTFYCGNVDPRTVLQVTPSAAILISTESKARVSSWEPPNGKS 308
             L+G EVEETE+ GF  DQQTF+CGNV  + ++Q+T ++  L+S E KA VS W+ P  K+
Sbjct:     2 LNGEEVEETELMGFVDDQQTFFCGNVAHQQLIQITSASVRLVSQEPKALVSEWKEPQAKN 61

Query:   309 ISVVSCNKNQVLCATGCDVYYLEVHGSEIKQLAHRALEYEVACLDISPLSNEETSSEPAK 368
             ISV SCN +QV+ A G  +YYL++H  E++Q++H  +E+EVACLDI+PL +    S P  
Sbjct:    62 ISVASCNSSQVVVAVGRALYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGLS-P-- 118

Query:   369 AQLAAVGLWTDISARLLSLPSLEEVCKEPLGGEIIPRSILMTCFEGHCYLLVALGDGSMF 428
               L A+GLWTDISAR+L LPS E + KE LGGEIIPRSILMT FE   YLL ALGDG++F
Sbjct:   119 --LCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALF 176

Query:   429 YFSLDPASGRLTDKKKVTLGTQPTVLKTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVN 488
             YF L+  +G L+D+KKVTLGTQPTVL+TFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVN
Sbjct:   177 YFGLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVN 236

Query:   489 LRQV 492
             L++V
Sbjct:   237 LKEV 240


>UNIPROTKB|F5H0Y5 [details] [associations]
            symbol:DDB1 "DNA damage-binding protein 1" species:9606
            "Homo sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0016055 "Wnt receptor
            signaling pathway" evidence=IEA] InterPro:IPR004871
            InterPro:IPR015943 Pfam:PF03178 GO:GO:0005634 GO:GO:0016055
            Gene3D:2.130.10.10 GO:GO:0003684 EMBL:AP003108 HGNC:HGNC:2717
            ChiTaRS:DDB1 EMBL:AP003037 IPI:IPI00909177
            ProteinModelPortal:F5H0Y5 SMR:F5H0Y5 Ensembl:ENST00000539332
            ArrayExpress:F5H0Y5 Bgee:F5H0Y5 Uniprot:F5H0Y5
        Length = 204

 Score = 698 (250.8 bits), Expect = 5.7e-68, P = 5.7e-68
 Identities = 126/166 (75%), Positives = 150/166 (90%)

Query:  1051 VVHPEENEPKQGRIIIFHYDDGKLQQIAEKEIKGACYSMCEFNGKLLASINSTVRLFEWT 1110
             +V+PEE EPKQGRI++F Y DGKLQ +AEKE+KGA YSM EFNGKLLASINSTVRL+EWT
Sbjct:     1 MVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWT 60

Query:  1111 NEKELRLECSHFNNIIALFLKVKGDFILVGDLMRSLTLLQYKTMEGSFEEISRDYNPNWM 1170
              EKELR EC+H+NNI+AL+LK KGDFILVGDLMRS+ LL YK MEG+FEEI+RD+NPNWM
Sbjct:    61 TEKELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWM 120

Query:  1171 TSIEILDDELFLGAENSYNLFICQKDSAATSDEDRTHLQEVGTVHL 1216
             +++EILDD+ FLGAEN++NLF+CQKDSAAT+DE+R HLQEVG  HL
Sbjct:   121 SAVEILDDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFHL 166


>ASPGD|ASPL0000052925 [details] [associations]
            symbol:ddbA species:162425 "Emericella nidulans"
            [GO:0006282 "regulation of DNA repair" evidence=IEA;ISA]
            [GO:0006974 "response to DNA damage stimulus" evidence=IEP;IMP]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
            [GO:0005829 "cytosol" evidence=IEA] [GO:0070913 "Ddb1-Wdr21
            complex" evidence=IEA] [GO:0008180 "signalosome" evidence=IEA]
            [GO:0070912 "Ddb1-Ckn1 complex" evidence=IEA] [GO:0031465
            "Cul4B-RING ubiquitin ligase complex" evidence=IEA] [GO:0006283
            "transcription-coupled nucleotide-excision repair" evidence=IEA]
            [GO:0040020 "regulation of meiosis" evidence=IEA] [GO:0042787
            "protein ubiquitination involved in ubiquitin-dependent protein
            catabolic process" evidence=IEA] [GO:0007090 "regulation of S phase
            of mitotic cell cycle" evidence=IEA] [GO:0034644 "cellular response
            to UV" evidence=IEA] InterPro:IPR004871 InterPro:IPR015943
            Pfam:PF03178 GO:GO:0005634 Gene3D:2.130.10.10 EMBL:BN001308
            GO:GO:0003676 EMBL:AACD01000007 KO:K10610 OMA:DRPAVIY
            OrthoDB:EOG473T0C RefSeq:XP_658200.1 STRING:Q5BFT4
            EnsemblFungi:CADANIAT00002078 GeneID:2876375 KEGG:ani:AN0596.2
            eggNOG:NOG316722 HOGENOM:HOG000216556 Uniprot:Q5BFT4
        Length = 1132

 Score = 568 (205.0 bits), Expect = 1.4e-66, Sum P(2) = 1.4e-66
 Identities = 154/495 (31%), Positives = 248/495 (50%)

Query:    79 SERYLLGDLAGRLFXXXXXXXXXXDGTFSVKEPKVELLGEISIPECLTYLDNGVVFVGSR 138
             S+R+LL D  GRLF               V+  ++  LG  S    L YL  GVVFVGS 
Sbjct:   294 SQRWLLADDYGRLFFLMLVLRNS-----EVERWELHSLGNTSRASVLVYLGGGVVFVGSH 348

Query:   139 LGDSQLVKLNRSPDENGTYVSVMESFTNLAPIIDMVVVDL-----ERQ------GQGQLV 187
              GDSQ++++    D++     V+++ +N+AP++D  ++DL     E Q      GQ ++V
Sbjct:   349 QGDSQVIRIG---DQS---FQVIQTLSNIAPVLDFTIMDLGNRTSENQMHEFSSGQARIV 402

Query:   188 TCSGGFKEGSLRIIRNGIGIEEHACI-DLPGIKGIWALSIGSPKNLDNTLVLSFVGHTRV 246
             T SG F +G+LR +R+G+G+EE   + D+  I  +W L +GS  +  +TL+++FV  TRV
Sbjct:   403 TGSGAFDDGTLRSVRSGVGLEELGVLGDMEHITDLWGLQVGSRGDFLDTLLVTFVNETRV 462

Query:   247 LTLS-GAEVEETEMG-GFTSDQQTFYCGNVDPRTVLQVTPSAAILISTESKARVSSWEPP 304
                S   E EE E   G +  + T    N+    +LQVT    ++   E    +  W P 
Sbjct:   463 FRFSPDGEAEELESFLGLSLSENTLLAANLPGSRILQVTEQRVLIADIECGMTIFEWTPK 522

Query:   305 NGKSISVVSCNKNQ-VLCATGCDVYYLEVHGSEIKQLAHRALEYEVACLDISPLSNEETS 363
             N   I+  S N +  VL A G  V  L++  SE + ++ +    +      + +S     
Sbjct:   523 NQLIITAASANDDTIVLVAGGKHVTVLDIQ-SEARVVSEKDFGAD------NQISGVTLP 575

Query:   364 SEPAKAQLAAVGLWTDISARLLSLPSLEEVCKEPLG--GEIIPRSILMTCF--EGHCYLL 419
             + P    +  VG        +L L  L  +    LG  GE  PRS+L+     E    L 
Sbjct:   576 TTPT--DVCIVGFPQLAKVSVLKLQDLSHISSTSLGPAGEAFPRSVLVASVLAENAPTLF 633

Query:   420 VALGDGSMFYFSLDPASGRLTDKKKVTLGT-QPTVLKTFRSLSTTNVFACSDRPTVIYSS 478
             +++ DGS+  +  +     L+   K+ LG+ QPT  K  R    +NVFA  + P++IY S
Sbjct:   634 ISMADGSVITYDYNDQDHSLSGMNKLVLGSEQPTFKKLPRGNGLSNVFATCENPSLIYGS 693

Query:   479 NHKLVFSNVNLRQVNHMCSLNAESYPDSLALATDSTFTFGTIDEIQKLHIRTVPLGEAPR 538
               ++++S VN    + +C  N+E+YP+S+A+AT      G +D+ +   I+T+P+    R
Sbjct:   694 EGRIIYSAVNSEGASRICHFNSEAYPESIAVATAQELKIGLVDKERTTQIQTLPIKATVR 753

Query:   539 RIAYQESSQTFGVIT 553
             R+AY  S + FG+ T
Sbjct:   754 RVAYSPSEKAFGMGT 768

 Score = 196 (74.1 bits), Expect = 1.4e-66, Sum P(2) = 1.4e-66
 Identities = 56/230 (24%), Positives = 115/230 (50%)

Query:  1001 EVEVHNLLIIDQNTFEILHAHQLFPGEYALSLI------SSKFGEDPNTYFVLGTAVVHP 1054
             E+     ++ D+  F  L A  L  GE  +  +       SK GE  +  FV+G+A +  
Sbjct:   778 EIVKSQFVLADEILFRRLDAFDL-EGEEIVECVIRAEAPESKDGEAKDR-FVVGSAYLGE 835

Query:  1055 EENEPKQGRIIIFHYDDG-KLQQIAEKEIKGACYSMCEFNGKLLASINSTVRLFEWTNEK 1113
             ++ +   G I +F  D+G KL ++A++ +KGAC ++     K++A++  TV +F+     
Sbjct:   836 DDGDSTLGYIRVFEVDNGRKLAKVAQERVKGACRALAVMGDKIVAALVKTVVVFQVVPRS 895

Query:  1114 E-LRLE--CSHFNNIIALFLKVKGDFILVGDLMRSLTLLQYKTMEGS----FEEISRDYN 1166
               L+L+   S+  +   + + V  + I + DLM+S+ +++Y   E        E++R + 
Sbjct:   896 GGLQLQRLASYRTSTAPVDITVTRNVIAIADLMKSVCVVEYHEGENGAPDKLVEVARHFQ 955

Query:  1167 PNWMTSIEILDDELFLGAENSYNLFICQKDSAATSDEDRTHLQEVGTVHL 1216
               W T +  +  + +L ++   NL + +++ +   ++DR  L+  G + L
Sbjct:   956 TVWATGVTSVAPDTYLESDAEGNLIVLRRNRSGVEEDDRRRLEVTGEICL 1005

 Score = 148 (57.2 bits), Expect = 7.0e-31, Sum P(3) = 7.0e-31
 Identities = 34/117 (29%), Positives = 64/117 (54%)

Query:   691 LVVAKNNRIEIHTVTPEGLRPVKEIFLYGKIAVMKFFRGPTDKK-DLLFIITQRYNAMIL 749
             LVVAK N++E ++VTP+GL  V    ++ ++ ++     P +   D LF+ T RY+   L
Sbjct:    29 LVVAKANQLEFYSVTPDGLALVTSCSIFARVTMLACLPAPANSPTDHLFVGTDRYSYFTL 88

Query:   750 ECRGDIDNLEILTKA-HGNVSDRIGKPSENGIIAIIDPEARVIGLRLYNGLFKIIPL 805
                 D    ++ T+  + +++D   + +  G   +IDP  R + L +Y+G+  +IP+
Sbjct:    89 SW--DSARNQVRTERDYVDIADPSSRDARTGSRCMIDPSGRFMTLEIYDGMIVVIPI 143

 Score = 145 (56.1 bits), Expect = 7.0e-31, Sum P(3) = 7.0e-31
 Identities = 44/135 (32%), Positives = 72/135 (53%)

Query:   818 RMEELEIQDVQFLH-GCQNPTIICIHQDVNGRHVKTHEISLK-------EKEFTKTPWKQ 869
             R++EL ++   FLH    +P +  +++D N + VK     LK       E EFT      
Sbjct:   176 RIDELFVRSSAFLHVQAGSPRLALLYED-NQKKVKLKVRELKYSTAAGAESEFTSIADYA 234

Query:   870 DNIEMEASLVIPVPEPL---GGAIIIGQESILYHSGKSYVAVAPQIIKSSTIVCYAKVDA 926
               +++ AS +IPVP PL   GG +I+G+ SI Y    +   V+  + +++  V + +VD+
Sbjct:   235 QELDLGASHLIPVPAPLAAAGGLLILGETSIKYVDADNNEIVSQPLEEATIFVAWEQVDS 294

Query:   927 NGERYLLGDLAGRLF 941
               +R+LL D  GRLF
Sbjct:   295 --QRWLLADDYGRLF 307

 Score = 111 (44.1 bits), Expect = 3.4e-17, Sum P(2) = 3.4e-17
 Identities = 22/57 (38%), Positives = 37/57 (64%)

Query:     1 EGSLRIIRNGIGIEEHACI-DLPGIKGIWALSIGSPKNLDNTLVLSFVGHTRVLTLS 56
             +G+LR +R+G+G+EE   + D+  I  +W L +GS  +  +TL+++FV  TRV   S
Sbjct:   410 DGTLRSVRSGVGLEELGVLGDMEHITDLWGLQVGSRGDFLDTLLVTFVNETRVFRFS 466

 Score = 97 (39.2 bits), Expect = 1.3e-25, Sum P(3) = 1.3e-25
 Identities = 23/77 (29%), Positives = 43/77 (55%)

Query:   611 VHNLLIIDQNTFERNFTSSTDLNLVVAKNNRIEIHTVTPEGLRPVKEIFLYGKIAVMKFF 670
             +H    I ++  + +F ++ D  LVVAK N++E ++VTP+GL  V    ++ ++ ++   
Sbjct:     7 IHRASSI-RHALKLHFLNAEDECLVVAKANQLEFYSVTPDGLALVTSCSIFARVTMLACL 65

Query:   671 RGPTDKK-DLLFIITQR 686
               P +   D LF+ T R
Sbjct:    66 PAPANSPTDHLFVGTDR 82

 Score = 59 (25.8 bits), Expect = 1.4e-16, Sum P(3) = 1.4e-16
 Identities = 20/81 (24%), Positives = 37/81 (45%)

Query:  1096 LLASINSTVRLFEWTNEKELRLECSHFNNIIALFLKVKGDFILVGDLMRSLTLLQYKTME 1155
             L+A I   + +FEWT + +L +  +  N+   + L   G  + V D+     ++  K   
Sbjct:   506 LIADIECGMTIFEWTPKNQLIITAASANDD-TIVLVAGGKHVTVLDIQSEARVVSEKDF- 563

Query:  1156 GSFEEISRDYNPNWMTSIEIL 1176
             G+  +IS    P   T + I+
Sbjct:   564 GADNQISGVTLPTTPTDVCIV 584

 Score = 51 (23.0 bits), Expect = 5.8e-11, Sum P(2) = 5.8e-11
 Identities = 16/51 (31%), Positives = 27/51 (52%)

Query:   458 RSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLRQVNHMCSLNAESYPDSLA 508
             RS +  +V A S R  ++Y  N K V   + +R++ +  +  AES   S+A
Sbjct:   183 RSSAFLHVQAGSPRLALLYEDNQKKV--KLKVRELKYSTAAGAESEFTSIA 231


>UNIPROTKB|F5H2L3 [details] [associations]
            symbol:DDB1 "DNA damage-binding protein 1" species:9606
            "Homo sapiens" [GO:0016055 "Wnt receptor signaling pathway"
            evidence=IEA] GO:GO:0016055 GO:GO:0003684 EMBL:AP003108
            HGNC:HGNC:2717 ChiTaRS:DDB1 EMBL:AP003037 IPI:IPI01011208
            ProteinModelPortal:F5H2L3 SMR:F5H2L3 Ensembl:ENST00000539426
            ArrayExpress:F5H2L3 Bgee:F5H2L3 Uniprot:F5H2L3
        Length = 165

 Score = 575 (207.5 bits), Expect = 1.1e-54, P = 1.1e-54
 Identities = 106/164 (64%), Positives = 137/164 (83%)

Query:   717 LYGKIAVMKFFRGPTDKKDLLFIITQRYNAMILECRGDIDNLEILTKAHGNVSDRIGKPS 776
             +YGKIAVM+ FR   + KDLLFI+T +YNA ILE +   ++++I+T+AHGNV DRIG+PS
Sbjct:     1 MYGKIAVMELFRPKGESKDLLFILTAKYNACILEYKQSGESIDIITRAHGNVQDRIGRPS 60

Query:   777 ENGIIAIIDPEARVIGLRLYNGLFKIIPLEKDNFELKASSIRMEELEIQDVQFLHGCQNP 836
             E GII IIDPE R+IGLRLY+GLFK+IPL++DN ELKA +IR+EEL + DV+FL+GCQ P
Sbjct:    61 ETGIIGIIDPECRMIGLRLYDGLFKVIPLDRDNKELKAFNIRLEELHVIDVKFLYGCQAP 120

Query:   837 TIICIHQDVNGRHVKTHEISLKEKEFTKTPWKQDNIEMEASLVI 880
             TI  ++QD  GRHVKT+E+SL+EKEF K PWKQ+N+E EAS+VI
Sbjct:   121 TICFVYQDPQGRHVKTYEVSLREKEFNKGPWKQENVEAEASMVI 164


>POMBASE|SPAC17H9.10c [details] [associations]
            symbol:ddb1 "damaged DNA binding protein Ddb1"
            species:4896 "Schizosaccharomyces pombe" [GO:0003677 "DNA binding"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
            "nucleolus" evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
            [GO:0006279 "premeiotic DNA replication" evidence=TAS] [GO:0006282
            "regulation of DNA repair" evidence=IMP] [GO:0006283
            "transcription-coupled nucleotide-excision repair" evidence=IMP]
            [GO:0006974 "response to DNA damage stimulus" evidence=IMP]
            [GO:0007090 "regulation of S phase of mitotic cell cycle"
            evidence=IMP] [GO:0034644 "cellular response to UV" evidence=IMP]
            [GO:0040020 "regulation of meiosis" evidence=IGI] [GO:0042787
            "protein ubiquitination involved in ubiquitin-dependent protein
            catabolic process" evidence=IMP] [GO:0051445 "regulation of meiotic
            cell cycle" evidence=IGI] [GO:0070912 "Ddb1-Ckn1 complex"
            evidence=IDA] [GO:0070913 "Ddb1-Wdr21 complex" evidence=IDA]
            [GO:0008180 "signalosome" evidence=IDA] [GO:0031465 "Cul4B-RING
            ubiquitin ligase complex" evidence=IDA] InterPro:IPR004871
            InterPro:IPR015943 Pfam:PF03178 UniPathway:UPA00143
            PomBase:SPAC17H9.10c GO:GO:0005829 EMBL:CU329670 GO:GO:0005730
            GenomeReviews:CU329670_GR Gene3D:2.130.10.10 GO:GO:0003677
            GO:GO:0007049 InterPro:IPR011047 SUPFAM:SSF50998 GO:GO:0034644
            GO:GO:0040020 GO:GO:0042787 GO:GO:0007090 GO:GO:0006283
            GO:GO:0006282 GO:GO:0006279 GO:GO:0070912 eggNOG:NOG247734
            KO:K10610 OMA:CALGDGS PIR:T37876 RefSeq:NP_593580.1 IntAct:O13807
            STRING:O13807 EnsemblFungi:SPAC17H9.10c.1 GeneID:2542207
            KEGG:spo:SPAC17H9.10c OrthoDB:EOG473T0C NextBio:20803277
            GO:GO:0070913 Uniprot:O13807
        Length = 1072

 Score = 265 (98.3 bits), Expect = 2.6e-45, Sum P(3) = 2.6e-45
 Identities = 73/227 (32%), Positives = 122/227 (53%)

Query:    79 SERYLLGDLAGRLFXXXXXXXXXXDGTFSVKEPKVELLGEISIPECLTYLDNGVVFVGSR 138
             S  Y++ D +G L+          D T S++   +E LGE SI  CL  L +  +FVGS 
Sbjct:   276 SSIYIVADESGMLYKFKALFT---DETVSME---LEKLGESSIASCLIALPDNHLFVGSH 329

Query:   139 LGDSQLVKLNRSPDENGTYVSVMESFTNLAPIIDMVVVDLERQGQGQLVTCSGGFKEGSL 198
               +S L++L  S  +N   + ++++F N+API D ++ D ++ G   ++TCSG +K+G+L
Sbjct:   330 FNNSVLLQLP-SITKNNHKLEILQNFVNIAPISDFIIDD-DQTGSS-IITCSGAYKDGTL 386

Query:   199 RIIRNGIGIEEHACIDLPGIKGIWALSIGSPKNLDNTLVLSFVGHTRVLTLSGAEVEETE 258
             RIIRN I IE  A I++ GIK  +++S  +  N DN + LS +  TR + +S   V    
Sbjct:   387 RIIRNSINIENVALIEMEGIKDFFSVSFRA--NYDNYIFLSLICETRAIIVSPEGVFSAN 444

Query:   259 MGGFTSDQQTFYCGNVDPRT-VLQVTPSAAILISTESKARVSSWEPP 304
                 + ++ T +   +   + +LQ+T     L   + K ++ SW  P
Sbjct:   445 HD-LSCEESTIFVSTIYGNSQILQITTKEIRLF--DGK-KLHSWISP 487

 Score = 225 (84.3 bits), Expect = 2.6e-45, Sum P(3) = 2.6e-45
 Identities = 56/204 (27%), Positives = 108/204 (52%)

Query:  1007 LLIIDQNTFEILHAHQLFPGEYALSLISSKFGEDPNTYFVLGTAVVHPEENEPKQGRIII 1066
             L + ++NT   + AH  F  EY   ++ S    + +   V+GT    P+++ P  GR+++
Sbjct:   736 LRVYEKNTLSEI-AHHKF-NEY--EMVESIILMNDDKRVVVGTGFNFPDQDAPDSGRLMV 791

Query:  1067 FHY-DDGKLQQIAEKEIKGACYSMCEFNGKLLASINSTVRLFEWTNEKELRLECSHFNNI 1125
             F    D  ++  AE +++G+  ++  +   ++A IN++V +FE+ +   + +  S     
Sbjct:   792 FEMTSDNNIEMQAEHKVQGSVNTLVLYKHLIVAGINASVCIFEYEHGT-MHVRNSIRTPT 850

Query:  1126 IALFLKVKGDFILVGDLMRSLTLLQYKTMEGSFEEISRDYNPNWMTSIEILDDELFLGAE 1185
               + + V  D I+  DLM+S+T+LQ+  ++    E++RDY+P W TS+EIL +  +   E
Sbjct:   851 YTIDISVNQDEIIAADLMKSITVLQF--IDDQLIEVARDYHPLWATSVEILSERKYFVTE 908

Query:  1186 NSYNLFICQKDSAATSDEDRTHLQ 1209
                N  I  +D+ +    DR  L+
Sbjct:   909 ADGNAVILLRDNVSPQLSDRKKLR 932

 Score = 201 (75.8 bits), Expect = 9.3e-30, Sum P(2) = 9.3e-30
 Identities = 73/315 (23%), Positives = 142/315 (45%)

Query:   669 FFRGPTDKKDLLFI-ITQRTDLNLVVAKNNRIEIHTVTPEGLRPVKEIFLYGKIAVMKFF 727
             +   P+  ++ +F      +  N++VAK N +E+++     L  +    ++ KI  +K F
Sbjct:     6 YLHKPSSIRNAVFCKFVNASSWNVIVAKVNCLEVYSYENNRLCLITSANIFAKIVNVKAF 65

Query:   728 RGPTDKKDLLFIITQRYNAMILECRGDIDNLEILTKAHGNVSDRIGKPSENGIIAIIDPE 787
             +  +   D + + T  +    L    + + +    K   + S+R  + S++G + ++DP 
Sbjct:    66 KPVSSPTDHIIVATDSFRYFTLFWDANDNTVSNGIKIQ-DCSERSLRESQSGPLLLVDPF 124

Query:   788 ARVIGLRLYNGLFKIIPLEKDNFELKAS----------SIRMEELEIQDVQFLHGCQNPT 837
              RVI L +Y GL  IIP+ K       S          S+R++EL + D+  L+    P+
Sbjct:   125 QRVICLHVYQGLLTIIPIFKSKKRFMTSHNNPSLHDNFSVRIQELNVVDIAMLYNSSRPS 184

Query:   838 IICIHQDVNGR-HVKTHEISLKEKEFTKTPWKQDNIEMEASLVIPVPEPLGGAIIIGQES 896
             +  +++D     H+ T++I+++E+E  +      +IE E  L+   P   GG  + G+  
Sbjct:   185 LAVLYKDSKSIVHLSTYKINVREQEIDEDDVVCHDIE-EGKLI---PSENGGVFVFGEMY 240

Query:   897 ILYHSGKSYVA----VAPQIIKSSTIVCYAKVDANGERYLLGDLAGRLFXXXXXXXXXXD 952
             + Y S    V+      P    S +I    +   +   Y++ D +G L+          D
Sbjct:   241 VYYISKDIQVSKLLLTYPITAFSPSISNDPETGLDSSIYIVADESGMLYKFKALFT---D 297

Query:   953 GTFSVKEPKVELLGE 967
              T S++   +E LGE
Sbjct:   298 ETVSME---LEKLGE 309

 Score = 134 (52.2 bits), Expect = 2.6e-45, Sum P(3) = 2.6e-45
 Identities = 51/201 (25%), Positives = 98/201 (48%)

Query:   374 VGLWTDISARLLSLPSLEEVCK--EPLGGEIIPRSILMTCFEGHC--YLLVALGDGSMFY 429
             VGLW   SA ++ L   ++       L    IPRSI+ +   G     L V+  +G +  
Sbjct:   540 VGLW---SADIIMLTYCQDGISLTHSLKLTDIPRSIVYSQKYGDDGGTLYVSTNNGYVLM 596

Query:   430 FSLDPASGRLTDK--KKVTLGTQPTVLKTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNV 487
             F+    +G++ +   ++  LG  P +LK F S     +FA  ++P ++Y  + KLV + +
Sbjct:   597 FNFQ--NGQVIEHSLRRNQLGVAPIILKHFDSKEKNAIFALGEKPQLMYYESDKLVITPL 654

Query:   488 NLRQVNHMCSLNAESYPDSLALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQ 547
             +  ++ ++ S    S   ++   T+S  +   + EI+ L+++TV +   PRRI    S+ 
Sbjct:   655 SCTEMLNISSYVNPSLGVNMLYCTNSYISLAKMSEIRSLNVQTVSVKGFPRRIC---SNS 711

Query:   548 TFGVITTRIDIQEADGSTPVR 568
              F  +   + ++E+ G+   R
Sbjct:   712 LFYFVLC-MQLEESIGTQEQR 731

 Score = 106 (42.4 bits), Expect = 1.3e-28, Sum P(3) = 1.3e-28
 Identities = 24/56 (42%), Positives = 36/56 (64%)

Query:     1 EGSLRIIRNGIGIEEHACIDLPGIKGIWALSIGSPKNLDNTLVLSFVGHTRVLTLS 56
             +G+LRIIRN I IE  A I++ GIK  +++S  +  N DN + LS +  TR + +S
Sbjct:   383 DGTLRIIRNSINIENVALIEMEGIKDFFSVSFRA--NYDNYIFLSLICETRAIIVS 436

 Score = 63 (27.2 bits), Expect = 2.4e-15, Sum P(2) = 2.4e-15
 Identities = 14/59 (23%), Positives = 31/59 (52%)

Query:   626 FTSSTDLNLVVAKNNRIEIHTVTPEGLRPVKEIFLYGKIAVMKFFRGPTDKKDLLFIIT 684
             F +++  N++VAK N +E+++     L  +    ++ KI  +K F+  +   D + + T
Sbjct:    21 FVNASSWNVIVAKVNCLEVYSYENNRLCLITSANIFAKIVNVKAFKPVSSPTDHIIVAT 79

 Score = 38 (18.4 bits), Expect = 4.9e-17, Sum P(2) = 4.9e-17
 Identities = 9/26 (34%), Positives = 14/26 (53%)

Query:   420 VALGDGSMFYFSLDPASGRLTDKKKV 445
             V   DG+      D  S +L+D+KK+
Sbjct:   906 VTEADGNAVILLRDNVSPQLSDRKKL 931

 Score = 38 (18.4 bits), Expect = 4.9e-17, Sum P(2) = 4.9e-17
 Identities = 21/113 (18%), Positives = 49/113 (43%)

Query:  1021 HQLFPGEYALSLI-SSKFGEDPNTYFVLGTAVVHPEENEPKQGRIIIFHYDDGKL--QQI 1077
             H L   +   S++ S K+G+D  T +V               G +++F++ +G++    +
Sbjct:   561 HSLKLTDIPRSIVYSQKYGDDGGTLYV-----------STNNGYVLMFNFQNGQVIEHSL 609

Query:  1078 AEKEIKGACYSMCEFNGK---LLASINSTVRLFEWTNEKEL--RLECSHFNNI 1125
                ++  A   +  F+ K    + ++    +L  + ++K +   L C+   NI
Sbjct:   610 RRNQLGVAPIILKHFDSKEKNAIFALGEKPQLMYYESDKLVITPLSCTEMLNI 662


>DICTYBASE|DDB_G0282569 [details] [associations]
            symbol:sf3b3 "splicing factor 3B subunit 3"
            species:44689 "Dictyostelium discoideum" [GO:0005634 "nucleus"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0030532 "small nuclear ribonucleoprotein complex" evidence=ISS]
            [GO:0008380 "RNA splicing" evidence=IEA;ISS] [GO:0006461 "protein
            complex assembly" evidence=ISS] [GO:0005681 "spliceosomal complex"
            evidence=IEA;ISS] [GO:0006397 "mRNA processing" evidence=IEA]
            InterPro:IPR017986 InterPro:IPR004871 InterPro:IPR015943
            Pfam:PF03178 dictyBase:DDB_G0282569 GO:GO:0006461 GO:GO:0008380
            Gene3D:2.130.10.10 SUPFAM:SSF50978 EMBL:AAFI02000047
            GenomeReviews:CM000152_GR GO:GO:0006397 GO:GO:0005681 GO:GO:0003676
            GO:GO:0030532 eggNOG:NOG247734 KO:K12830 OMA:FDTIPVA
            RefSeq:XP_640132.1 STRING:Q54SA7 EnsemblProtists:DDB0233171
            GeneID:8623669 KEGG:ddi:DDB_G0282569 ProtClustDB:CLSZ2729005
            Uniprot:Q54SA7
        Length = 1256

 Score = 254 (94.5 bits), Expect = 3.2e-44, Sum P(4) = 3.2e-44
 Identities = 70/230 (30%), Positives = 119/230 (51%)

Query:   165 TNLAPIIDMVVVDLERQGQGQLVTCSGGFKEGSLRIIRNGIGIEEHACIDLPGI-KGIWA 223
             ++L+PIID  V+DL R+   QL +  G     SL+++R+G+ +      +LPG+  GIW 
Sbjct:   415 SSLSPIIDFKVLDLVREENPQLYSLCGTGLNSSLKVLRHGLSVTTITTANLPGVPSGIWT 474

Query:   224 LSIG-SPKNLDNT---LVLSFVGHTRVLTLSGAEVEETEMGGFTSDQQTFYCGNVDPRTV 279
             +    SP  +D T   +V+SFVG T VL++ G  ++E    G      T    ++    +
Sbjct:   475 VPKSTSPNAIDQTDKYIVVSFVGTTSVLSV-GDTIQENHESGILETTTTLLVKSMGDDAI 533

Query:   280 LQVTPSAAILISTESKARVSSWEPPNGKSISVVSCNKNQVLCA-TGCDVYYLEV-HGSEI 337
             +QV P+    I  +S  R++ W  P  K+I   S N++Q+  A +G ++ Y E+   S +
Sbjct:   534 IQVFPTGFRHI--KSDLRINEWRAPGRKTIVRASANQSQLAIALSGGEIIYFELDQASNL 591

Query:   338 KQLAHRALEYEVACLDISPLSNEETSSEPAKAQLAAVGLWTDISARLLSL 387
              ++  + L  ++AC++ISP+           A+  AV  W     R+LSL
Sbjct:   592 IEIIKKDLRRDIACIEISPIPKGRNM-----ARFIAVSDWEG-PIRVLSL 635

 Score = 232 (86.7 bits), Expect = 3.2e-44, Sum P(4) = 3.2e-44
 Identities = 56/190 (29%), Positives = 99/190 (52%)

Query:  1009 IIDQNTFEILHAHQLFPGEYALSLISSKFGEDPNTYFVLGTA---VVHPEENEPKQGRII 1065
             I+D  T E L +  L  GE   S+ +  FGE    + V+G     V++P+ +  K   + 
Sbjct:   908 IMDPITHESLESLMLEDGEAGFSVCTCSFGESGEIFLVVGCVTDMVLNPKSH--KSAHLN 965

Query:  1066 IFHYDDG--KLQQIAEKEIKGACYSMCEFNGKLLASINSTVRLFEWTNEKELR-LECSHF 1122
             ++ + DG  KL+ + + E++   Y+M +F GKL+  +  ++R+++   +K LR  E  + 
Sbjct:   966 LYRFIDGGKKLELLYKTEVEEPVYAMAQFQGKLVCGVGKSIRIYDMGKKKLLRKCETKNL 1025

Query:  1123 NNIIALFLKVKGDFILVGDLMRSLTLLQYKTMEGSFEEISRDYNPNWMTSIEILDDELFL 1182
              N I     + GD ++VGD+  S+  ++YK  E      + D  P WMTS  +LD +   
Sbjct:  1026 PNTIVNIHSL-GDRLVVGDIQESIHFIKYKRSENMLYVFADDLAPRWMTSSVMLDYDTVA 1084

Query:  1183 GAENSYNLFI 1192
             GA+   N+F+
Sbjct:  1085 GADKFGNIFV 1094

 Score = 110 (43.8 bits), Expect = 3.2e-44, Sum P(4) = 3.2e-44
 Identities = 32/135 (23%), Positives = 67/135 (49%)

Query:   414 GHCYLLVALGDGSMFYFSLDPASGRLTDKKKVTLGTQPTVLKTFRSLSTTNVFACSDRPT 473
             G  +L V L +G +   +LD  +G L+D +   LG +P  L   +   +  + A S R  
Sbjct:   699 GSLFLFVGLKNGVVKRATLDSVTGELSDIRTRLLGRKPVKLFKVKVRGSNAMLALSSRVW 758

Query:   474 VIYSSNHKLVFSNVNLRQVNHMCSLNAESYPDSLALATDSTFTFGTIDEIQKL-HIRTVP 532
             + Y +  KL    +++  + +  +L++E   +S+   +++     +ID++  L +  T+ 
Sbjct:   759 LNYINQGKLDIVPLSIEPLENASNLSSEQSAESIVATSENKIIIFSIDKLGDLFNQETIK 818

Query:   533 LGEAPRR-IAYQESS 546
             L   P+R I + ++S
Sbjct:   819 LNATPKRFIIHPQTS 833

 Score = 94 (38.1 bits), Expect = 2.3e-25, Sum P(3) = 2.3e-25
 Identities = 22/58 (37%), Positives = 36/58 (62%)

Query:     3 SLRIIRNGIGIEEHACIDLPGI-KGIWALSIG-SPKNLDNT---LVLSFVGHTRVLTL 55
             SL+++R+G+ +      +LPG+  GIW +    SP  +D T   +V+SFVG T VL++
Sbjct:   447 SLKVLRHGLSVTTITTANLPGVPSGIWTVPKSTSPNAIDQTDKYIVVSFVGTTSVLSV 504

 Score = 69 (29.3 bits), Expect = 3.2e-44, Sum P(4) = 3.2e-44
 Identities = 17/46 (36%), Positives = 19/46 (41%)

Query:   108 VKEPKVELLGEISIPECLTYLDNGVVFVGSRLGDSQLVKLNRSPDE 153
             V E  V     I +  CLT L NG +F  S  GD  L       DE
Sbjct:   329 VSEVNVNYFDTIVLANCLTVLKNGFLFAASEFGDHTLYFFKSIGDE 374

 Score = 54 (24.1 bits), Expect = 1.4e-19, Sum P(3) = 1.4e-19
 Identities = 13/40 (32%), Positives = 18/40 (45%)

Query:   405 RSILMTCFEGHCYLLVALGDGSMFYFSLDPASGRLTDKKK 444
             R  ++        L +AL  G + YF LD AS  +   KK
Sbjct:   558 RKTIVRASANQSQLAIALSGGEIIYFELDQASNLIEIIKK 597

 Score = 46 (21.3 bits), Expect = 9.0e-19, Sum P(3) = 9.0e-19
 Identities = 36/151 (23%), Positives = 61/151 (40%)

Query:   687 TDLNLVVAKNNRIEIHTVTPEGLRPVKEIFLYGKIAVMKFFRGPTDKKDLLFIITQRYNA 746
             T   L+V       I  V P G R +K      +      +R P  K  +     Q   A
Sbjct:   519 TTTTLLVKSMGDDAIIQVFPTGFRHIKSDLRINE------WRAPGRKTIVRASANQSQLA 572

Query:   747 MILECRGDIDNLEILTKAHGNVSDRIGKPSENGIIAI-IDP------EARVIGLRLYNGL 799
             + L   G+I   E L +A  N+ + I K     I  I I P       AR I +  + G 
Sbjct:   573 IALS-GGEIIYFE-LDQA-SNLIEIIKKDLRRDIACIEISPIPKGRNMARFIAVSDWEGP 629

Query:   800 FKIIPLEKDNFELKASSIRMEELEIQDVQFL 830
              +++ L++DN   + S +  +++ I+ +  +
Sbjct:   630 IRVLSLDRDNCLGQVSMLDTDKVYIESLSII 660

 Score = 43 (20.2 bits), Expect = 8.6e-25, Sum P(4) = 8.6e-25
 Identities = 10/27 (37%), Positives = 14/27 (51%)

Query:  1137 ILVGDLMRSLTLLQYKTMEGSFEEISR 1163
             I+ GDL    + L Y+      EE+SR
Sbjct:  1212 IIDGDLCEQFSTLNYQKQLSISEELSR 1238

 Score = 37 (18.1 bits), Expect = 6.5e-41, Sum P(4) = 6.5e-41
 Identities = 14/49 (28%), Positives = 22/49 (44%)

Query:   131 GVVFVGSRLGDSQLVK-LNRSPDENGTYVSVMESFTNLAPIIDMVVVDL 178
             G  F+   +   +LV  LNR    N T  S +E+  +   +  M  VD+
Sbjct:   126 GRAFMIGAIEKQKLVYILNRDSSANLTISSPLEAHKSNTIVFSMCGVDV 174


>UNIPROTKB|F5H198 [details] [associations]
            symbol:DDB1 "DNA damage-binding protein 1" species:9606
            "Homo sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] InterPro:IPR004871 Pfam:PF03178
            GO:GO:0005634 GO:GO:0003676 EMBL:AP003108 HGNC:HGNC:2717
            ChiTaRS:DDB1 EMBL:AP003037 IPI:IPI01014884
            ProteinModelPortal:F5H198 SMR:F5H198 Ensembl:ENST00000543658
            ArrayExpress:F5H198 Bgee:F5H198 Uniprot:F5H198
        Length = 162

 Score = 297 (109.6 bits), Expect = 5.7e-40, Sum P(2) = 5.7e-40
 Identities = 60/96 (62%), Positives = 72/96 (75%)

Query:   972 PVVEMSSLSYIKPGSTKQSTANQPADFNMEVEVHNLLIIDQNTFEILHAHQLFPGEYALS 1031
             P    SS+S  K  S+  STA     F  EVEVHNLLIIDQ+TFE+LHAHQ    EYALS
Sbjct:    69 PKALSSSVSSSKLFSS--STAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALS 126

Query:  1032 LISSKFGEDPNTYFVLGTAVVHPEENEPKQGRIIIF 1067
             L+S K G+DPNTYF++GTA+V+PEE EPKQGRI++F
Sbjct:   127 LVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVF 162

 Score = 171 (65.3 bits), Expect = 5.7e-40, Sum P(2) = 5.7e-40
 Identities = 32/47 (68%), Positives = 41/47 (87%)

Query:   625 NFTSSTDLNLVVAKNNRIEIHTVTPEGLRPVKEIFLYGKIAVMKFFR 671
             +FTS+ DLNL++AKN R+EI+ VT EGLRPVKE+ +YGKIAVM+ FR
Sbjct:    22 HFTSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGKIAVMELFR 68

 Score = 158 (60.7 bits), Expect = 1.3e-38, Sum P(2) = 1.3e-38
 Identities = 30/45 (66%), Positives = 37/45 (82%)

Query:   684 TQRTDLNLVVAKNNRIEIHTVTPEGLRPVKEIFLYGKIAVMKFFR 728
             T   DLNL++AKN R+EI+ VT EGLRPVKE+ +YGKIAVM+ FR
Sbjct:    24 TSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGKIAVMELFR 68


>UNIPROTKB|G4N4E2 [details] [associations]
            symbol:MGG_16867 "Uncharacterized protein" species:242507
            "Magnaporthe oryzae 70-15" [GO:0008150 "biological_process"
            evidence=ND] InterPro:IPR004871 InterPro:IPR015943 Pfam:PF03178
            GO:GO:0005634 Gene3D:2.130.10.10 EMBL:CM001233 GO:GO:0003676
            RefSeq:XP_003712617.1 EnsemblFungi:MGG_16867T0 GeneID:12985117
            KEGG:mgr:MGG_16867 Uniprot:G4N4E2
        Length = 1183

 Score = 388 (141.6 bits), Expect = 3.1e-39, Sum P(3) = 3.1e-39
 Identities = 124/434 (28%), Positives = 212/434 (48%)

Query:   156 TYVSVMESFTNLAPIIDMVVVDL-ERQGQGQL-----------VTCSGGFKEGSLRIIRN 203
             +++ + ++  N+API+D  V+D+  R+G  QL           VT SG  K+GSLR +R+
Sbjct:   379 SFLELRQTIENIAPILDFAVMDMGNREGDSQLGNEYSSGQARIVTASGAQKDGSLRSVRS 438

Query:   204 GIGIEEHACI--DLPGIKGIWAL-SIGSPKNLDNTLVLSFVGHTRVLTLSG-AEVEE-TE 258
             G+G+E+   I  ++ G+ G+++L S GS  ++++TLV+SF+  TRV       EVEE ++
Sbjct:   439 GVGLEDIGVITDEISGVTGLFSLKSYGS--DVEDTLVVSFLTETRVFRFDKQGEVEELSQ 496

Query:   259 MGGFTSDQQTFYCGNVDPRTVLQVTPSAAILISTESKARVSSWEPPNGKSISVVSCNKNQ 318
             + G    Q T     +D   VL VT   A L   E    +SSW P +GK I+  S N   
Sbjct:   497 LQGLDISQPTLLVLGLDNGHVLYVTEEKATLFDAEGGVTISSWSPTSGKPITHASSNGRW 556

Query:   319 VLCAT-GCDVYYLEVHGSEIKQLAHRAL--EYEVACLDISPLSNEETSSEPAKAQLAAVG 375
             VL +  G  +  L + G ++K  A      E +++C++ SP              + AVG
Sbjct:   557 VLLSVDGRKLVSLNI-GLDLKVSAESEERDEDQISCVNASP----------HLLDVGAVG 605

Query:   376 LWTDISARLLSLPSLEEVCKEPL----GGEIIPRSILMT----CFEGHCYLLVALGDGSM 427
              W+  +  ++ L +LE    E L       ++ R +++         +  L V+  DG +
Sbjct:   606 FWSSGTISIIDLKTLEATQTEKLRRNEDDAVVAREVVLARVLPAEVANPTLFVSKDDGEV 665

Query:   428 FYFSLDPASGRLTDKKKVTLGTQPTVLKTFRSLSTTN----VFACSDRPTVIYSSNHKLV 483
               F  +  +G L+ +K V LGT+      FR L   N    +F   +  ++I+ +  ++V
Sbjct:   666 MTFVYND-NGTLSSRKSVVLGTREA---RFRVLPQPNGLCSIFVTCEHSSLIHGAERRIV 721

Query:   484 FSNVNLRQVNHMCSLNAESYPDSLALATDSTFT------FGTIDEIQKLHIRTVPLGEAP 537
             +S V      ++C  +  ++ D LA+AT+S            ID  ++  + T P+GE  
Sbjct:   722 YSAVTAHSAAYVCPFDTAAFRDCLAVATESAIDRRMELKISRIDRQRQCQMMTRPMGENV 781

Query:   538 RRIAYQESSQTFGV 551
             R IAY  + + FG+
Sbjct:   782 RSIAYSSADKVFGL 795

 Score = 235 (87.8 bits), Expect = 1.1e-22, Sum P(3) = 1.1e-22
 Identities = 128/523 (24%), Positives = 221/523 (42%)

Query:    47 VGHTRVLTLSGAEWGFH--LLRGFSSLGSLWNGWSE-RYLLGDLAGRLFXXXXXXXXXXD 103
             VG +R+L +    W +    L+  + +   W  +    YLL D  G L           D
Sbjct:   267 VGESRMLYIDDQSWTWTETALKN-AMVFVAWAKFDNTHYLLADDYGGLHLLTIQVKQNSD 325

Query:   104 GTFSVKEPKVELLGEISIPECLTYLD-NGVVFVGSRLGDSQLVKLNRSPD--ENGTYVSV 160
                +V       +G  S    L Y + N  +FV S  GDSQ   +N   D  +  +++ +
Sbjct:   326 T--AVDHMSTVQIGTTSRATKLVYSETNRTLFVASHYGDSQFYDVNLFADAAKGESFLEL 383

Query:   161 MESFTNLAPIIDMVVVDL-ERQGQGQL-----------VTCSGGFKEGSLRIIRNGIGIE 208
              ++  N+API+D  V+D+  R+G  QL           VT SG  K+GSLR +R+G+G+E
Sbjct:   384 RQTIENIAPILDFAVMDMGNREGDSQLGNEYSSGQARIVTASGAQKDGSLRSVRSGVGLE 443

Query:   209 EHACI--DLPGIKGIWALSIGSPKNLDNTLVLSFVGHTRVLTLSG-AEVEETEMGGFTSD 265
             +   I  ++ G+ G+++L      ++++TLV+SF+  TRV       EVEE       S 
Sbjct:   444 DIGVITDEISGVTGLFSLK-SYGSDVEDTLVVSFLTETRVFRFDKQGEVEEL------SQ 496

Query:   266 QQTFYCGNVDPRTVLQV-TPSAAILISTESKARVSSWEPPNGKSISVVSCNKNQVLCATG 324
              Q     ++   T+L +   +  +L  TE KA +  ++   G +IS  S    + +    
Sbjct:   497 LQGL---DISQPTLLVLGLDNGHVLYVTEEKATL--FDAEGGVTISSWSPTSGKPITHAS 551

Query:   325 CDVYY--LEVHGSEIKQLAHRALEYEVACLDISPLSNEETS---SEPAKAQLAAVGLWTD 379
              +  +  L V G ++  L +  L+ +V+  +      ++ S   + P    + AVG W+ 
Sbjct:   552 SNGRWVLLSVDGRKLVSL-NIGLDLKVSA-ESEERDEDQISCVNASPHLLDVGAVGFWSS 609

Query:   380 ISARLLSLPSLEEVCKEPL----GGEIIPRSILMTCF---EGHCYLLVALGDGSMFYFSL 432
              +  ++ L +LE    E L       ++ R +++      E     L    D       +
Sbjct:   610 GTISIIDLKTLEATQTEKLRRNEDDAVVAREVVLARVLPAEVANPTLFVSKDDGEVMTFV 669

Query:   433 DPASGRLTDKKKVTLGTQPTVLKTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLRQV 492
                +G L+ +K V LGT+      FR L   N   CS    +  +  H  +      R V
Sbjct:   670 YNDNGTLSSRKSVVLGTREA---RFRVLPQPNGL-CS----IFVTCEHSSLIHGAERRIV 721

Query:   493 NHMCSLNAESY--PDSLALATD--STFTFGTIDEIQKLHIRTV 531
                 + ++ +Y  P   A   D  +  T   ID   +L I  +
Sbjct:   722 YSAVTAHSAAYVCPFDTAAFRDCLAVATESAIDRRMELKISRI 764

 Score = 149 (57.5 bits), Expect = 3.3e-16, Sum P(4) = 3.3e-16
 Identities = 58/223 (26%), Positives = 107/223 (47%)

Query:   690 NLVVAKNNRIEIHTVTPEG-LRPVKEIFLYGKIAVMKFFRGPTDKKDLLFIITQRYNAMI 748
             +LV+AK NR+EI   T EG L+      ++GKI +++  R    + D+LF+ T R+    
Sbjct:    28 SLVLAKTNRLEIWRRTDEGQLKLEHSQSVFGKIVMLQAVRPKDSETDMLFVGTDRFKYFT 87

Query:   749 LECRGDIDNLEILTK-AHGNVSDRIGKPSENGIIAIIDPEARVIGLRLYNGLFKIIPLEK 807
              E   D D  E++T+ A  ++ ++  +   +    I+DP  R + L L++G+  +  L K
Sbjct:    88 AEY--DPDTRELVTRQAISDLGEQFVREVSSRNRCIVDPSGRYMVLLLWSGIMHVWRLHK 145

Query:   808 DNFELKAS---------SIRMEELEIQDVQFLHG-CQNPTIICIHQD-VNGRHVK--THE 854
                + K             R+ EL I+D  FLH    +P I  ++Q   N    K  ++ 
Sbjct:   146 RKGQQKGQLQTRLELMDQARISELYIKDAVFLHSETAHPRIAFLYQPRPNEPDCKFASYR 205

Query:   855 ISLKEKEFTKTPWKQDNIEMEASLVIPVPEPLGGAIIIGQESI 897
             +   +++   + ++Q + E   +    VP+P G  ++I  E +
Sbjct:   206 LCTDDRDRELSRFEQKDREFTFN----VPDP-GSTMMIPVERV 243

 Score = 101 (40.6 bits), Expect = 3.0e-08, Sum P(4) = 3.0e-08
 Identities = 23/55 (41%), Positives = 41/55 (74%)

Query:     1 EGSLRIIRNGIGIEEHACI--DLPGIKGIWAL-SIGSPKNLDNTLVLSFVGHTRV 52
             +GSLR +R+G+G+E+   I  ++ G+ G+++L S GS  ++++TLV+SF+  TRV
Sbjct:   430 DGSLRSVRSGVGLEDIGVITDEISGVTGLFSLKSYGS--DVEDTLVVSFLTETRV 482

 Score = 91 (37.1 bits), Expect = 3.1e-39, Sum P(3) = 3.1e-39
 Identities = 33/127 (25%), Positives = 60/127 (47%)

Query:  1032 LISSKFGEDPNTYFVLGTAVVHPEENEPKQGRIIIFHYDDGKLQQIAEKE-IKGACYSMC 1090
             L+ S +GE     F++GT  +         GR+++F  D+ +   +      K  C  + 
Sbjct:   844 LLDS-YGEQAER-FIVGTRYLSGT-GSGHGGRVLVFGVDESRSPYLIHAHSTKSGCRRIA 900

Query:  1091 EFNGKLLA-SINSTVRLFEW-----TNEKELRLECSHFNNIIALFLKVKGDFILVGDLMR 1144
               +  LL  ++  TV L  +     T+ K L++     ++  A+ + V G  I V D+M+
Sbjct:   901 TMDDDLLVIALTKTVVLVRYSETSTTSAKFLKVAAFQTSSY-AVDVTVHGKLIAVADIMK 959

Query:  1145 SLTLLQY 1151
             S+TLL+Y
Sbjct:   960 SITLLEY 966

 Score = 84 (34.6 bits), Expect = 1.8e-09, Sum P(4) = 1.8e-09
 Identities = 21/55 (38%), Positives = 33/55 (60%)

Query:   633 NLVVAKNNRIEIHTVTPEG-LRPVKEIFLYGKIAVMKFFRGPTDKKDLLFIITQR 686
             +LV+AK NR+EI   T EG L+      ++GKI +++  R    + D+LF+ T R
Sbjct:    28 SLVLAKTNRLEIWRRTDEGQLKLEHSQSVFGKIVMLQAVRPKDSETDMLFVGTDR 82

 Score = 83 (34.3 bits), Expect = 3.1e-39, Sum P(3) = 3.1e-39
 Identities = 18/62 (29%), Positives = 35/62 (56%)

Query:  1152 KTMEGSFE----EISRDYNPNWMTSIEILDDELFLGAENSYNLFICQKDSAATSDEDRTH 1207
             K +EGS +    E+ RDY   W T++  L+ + ++ A+   NL +  +++A  + ED+  
Sbjct:   987 KEVEGSKQAKLVEVCRDYQAMWSTAVSHLEGDSWIVADGDGNLVVLLRNTAGVTLEDKRR 1046

Query:  1208 LQ 1209
             +Q
Sbjct:  1047 MQ 1048

 Score = 72 (30.4 bits), Expect = 3.3e-16, Sum P(4) = 3.3e-16
 Identities = 18/55 (32%), Positives = 27/55 (49%)

Query:   886 LGGAIIIGQESILYHSGKSYVAVAPQIIKSSTIVCYAKVDANGERYLLGDLAGRL 940
             LGG I++G+  +LY   +S+      +  +   V +AK D     YLL D  G L
Sbjct:   261 LGGVIVVGESRMLYIDDQSWTWTETALKNAMVFVAWAKFD--NTHYLLADDYGGL 313

 Score = 48 (22.0 bits), Expect = 3.5e-31, Sum P(2) = 3.5e-31
 Identities = 36/151 (23%), Positives = 62/151 (41%)

Query:  1070 DDGKLQQIAEKEIKGACYSMCEFNGKLLASINSTV--RLFEWTNEKELRLECSHFNNIIA 1127
             D  ++Q  +E  + G C +  +    +  S N+ +  + F  T E  + L    F  +  
Sbjct:  1043 DKRRMQMTSEFGL-GECVNKIQ-KVMVETSANAPIVAKAFLSTTEGSIYL----FGTVAP 1096

Query:  1128 LFLKVKGDFI--LVGDLMRSLTLLQYKTMEGSFEEISRD-YNPNWMTSIEILDDELFLGA 1184
              F  +  DF   +   +   L  LQ+     SF    R+   P      E L  E+FL  
Sbjct:  1097 KFQSLLMDFQANMEAHVSSPLGELQFNQWR-SFRNPEREGAGPERFLDGEFL--EMFLDM 1153

Query:  1185 ENSYNLFICQKDSAATSDEDRTHLQEVGTVH 1215
             E +  + ICQ  S  T+++ R  + E+  +H
Sbjct:  1154 EENTQIDICQGLSY-TAEDMRNLIGEMKNMH 1183

 Score = 47 (21.6 bits), Expect = 4.4e-31, Sum P(2) = 4.4e-31
 Identities = 36/187 (19%), Positives = 73/187 (39%)

Query:   992 ANQPADFNMEVEVHNLLIIDQNTFEILHAHQLFPGEYALSLISSKFGEDPNTYFVLGTAV 1051
             A Q + + ++V VH  LI   +  + +   +  PG   +   +   G+D  T        
Sbjct:   935 AFQTSSYAVDVTVHGKLIAVADIMKSITLLEYIPG---VGKSAKTGGKDKATRS------ 985

Query:  1052 VHPEENEPKQGRIIIFHYDDGKLQQIAEKEIKGACYSMCEFNGKLLASINSTV------- 1104
                E    KQ +++    D   +   A   ++G  + + + +G L+  + +T        
Sbjct:   986 -DKEVEGSKQAKLVEVCRDYQAMWSTAVSHLEGDSWIVADGDGNLVVLLRNTAGVTLEDK 1044

Query:  1105 RLFEWTNEKELRLECSHFNNIIALFLKVKGDFILVGDLMRSLT---LLQYKTMEGSFEEI 1161
             R  + T+E  L  EC   N I  + ++   +  +V     S T   +  + T+   F+ +
Sbjct:  1045 RRMQMTSEFGLG-EC--VNKIQKVMVETSANAPIVAKAFLSTTEGSIYLFGTVAPKFQSL 1101

Query:  1162 SRDYNPN 1168
               D+  N
Sbjct:  1102 LMDFQAN 1108

 Score = 42 (19.8 bits), Expect = 3.4e-13, Sum P(4) = 3.4e-13
 Identities = 10/42 (23%), Positives = 17/42 (40%)

Query:   879 VIPVPEPLGGAIIIGQESILYHSGKSYVAVAPQIIKSSTIVC 920
             V+P P  L    +  + S L H  +  +  +     S+  VC
Sbjct:   693 VLPQPNGLCSIFVTCEHSSLIHGAERRIVYSAVTAHSAAYVC 734

 Score = 37 (18.1 bits), Expect = 6.5e-05, Sum P(4) = 6.5e-05
 Identities = 13/45 (28%), Positives = 20/45 (44%)

Query:   256 ETEMGGFTSDQQTFYCGNVDPRTVLQVTPSAAILISTESKARVSS 300
             ET+M    +D+  ++    DP T   VT  A   +  +    VSS
Sbjct:    72 ETDMLFVGTDRFKYFTAEYDPDTRELVTRQAISDLGEQFVREVSS 116


>UNIPROTKB|F5GZY8 [details] [associations]
            symbol:DDB1 "DNA damage-binding protein 1" species:9606
            "Homo sapiens" [GO:0016055 "Wnt receptor signaling pathway"
            evidence=IEA] GO:GO:0016055 GO:GO:0003684 EMBL:AP003108
            HGNC:HGNC:2717 ChiTaRS:DDB1 EMBL:AP003037 IPI:IPI01011929
            ProteinModelPortal:F5GZY8 SMR:F5GZY8 Ensembl:ENST00000542337
            ArrayExpress:F5GZY8 Bgee:F5GZY8 Uniprot:F5GZY8
        Length = 146

 Score = 420 (152.9 bits), Expect = 4.3e-38, P = 4.3e-38
 Identities = 79/123 (64%), Positives = 101/123 (82%)

Query:   684 TQRTDLNLVVAKNNRIEIHTVTPEGLRPVKEIFLYGKIAVMKFFRGPTDKKDLLFIITQR 743
             T   DLNL++AKN R+EI+ VT EGLRPVKE+ +YGKIAVM+ FR   + KDLLFI+T +
Sbjct:    24 TSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGKIAVMELFRPKGESKDLLFILTAK 83

Query:   744 YNAMILECRGDIDNLEILTKAHGNVSDRIGKPSENGIIAIIDPEARVIGLRLYNGLFKII 803
             YNA ILE +   ++++I+T+AHGNV DRIG+PSE GII IIDPE R+IGLRLY+GLFK+I
Sbjct:    84 YNACILEYKQSGESIDIITRAHGNVQDRIGRPSETGIIGIIDPECRMIGLRLYDGLFKVI 143

Query:   804 PLE 806
             PL+
Sbjct:   144 PLD 146

 Score = 210 (79.0 bits), Expect = 1.1e-15, P = 1.1e-15
 Identities = 42/81 (51%), Positives = 59/81 (72%)

Query:   625 NFTSSTDLNLVVAKNNRIEIHTVTPEGLRPVKEIFLYGKIAVMKFFRGPTDKKDLLFIIT 684
             +FTS+ DLNL++AKN R+EI+ VT EGLRPVKE+ +YGKIAVM+ FR   + KDLLFI+T
Sbjct:    22 HFTSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGKIAVMELFRPKGESKDLLFILT 81

Query:   685 QRTDLNLVVAKNNRIEIHTVT 705
              + +  ++  K +   I  +T
Sbjct:    82 AKYNACILEYKQSGESIDIIT 102


>UNIPROTKB|E9PT66 [details] [associations]
            symbol:Sf3b3 "Protein Sf3b3" species:10116 "Rattus
            norvegicus" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] InterPro:IPR004871 Pfam:PF03178
            RGD:1311636 GO:GO:0003676 GO:GO:0071013
            GeneTree:ENSGT00530000063396 GO:GO:0005689 IPI:IPI00958853
            Ensembl:ENSRNOT00000023854 ArrayExpress:E9PT66 Uniprot:E9PT66
        Length = 920

 Score = 305 (112.4 bits), Expect = 6.9e-32, Sum P(3) = 6.9e-32
 Identities = 105/415 (25%), Positives = 183/415 (44%)

Query:   160 VMESFTNLAPIIDMVVVDLERQGQGQLVTCSGGFKEGSLRIIRNGIGIEEHACIDLPGI- 218
             +++   +L+PI+   + DL  +   QL    G     SLR++R+G+ + E A  +LPG  
Sbjct:   100 LVDELDSLSPILFCQIADLANEDTPQLYVACGRGPRSSLRVLRHGLEVSEMAVSELPGNP 159

Query:   219 KGIWALSIGSPKNLDNTLVLSFVGHTRVLTLSGAEVEETEMGGFTSDQQTFYCGNVDPRT 278
               +W +        D  +++SFV  T VL++ G  VEE    GF     T  C  +    
Sbjct:   160 NAVWTVRRHIEDEFDAYIIVSFVNATLVLSI-GETVEEVTDSGFLGTTPTLSCSLLGDDA 218

Query:   279 VLQVTPSAAILISTESKARVSSWEPPNGKSISVVSCNKNQVLCA-TGCDVYYLEVHGS-E 336
             ++QV P     I  +   RV+ W+ P  K+I   + N+ QV+ A TG ++ Y E+  S +
Sbjct:   219 LVQVYPDGIRHIRADK--RVNEWKTPGKKTIVKCAVNQRQVVIALTGGELVYFEMDPSGQ 276

Query:   337 IKQLAHRA-LEYEVACLDISPLSNEETSSEPAKAQLAAVGLWTDISARLLSL-PS--L-- 390
             + +   R  +  +V C+    L+N     +  +++  AVGL  D + R++SL PS  L  
Sbjct:   277 LNEYTERKEMSADVVCMS---LANVPPGEQ--RSRFLAVGL-VDNTVRIISLDPSDCLQP 330

Query:   391 ----------EEVCKEPLGGEIIPRSILMTCFEGHCYLLVALGDGSMFYFSLDPASGRLT 440
                       E +C   +GG      +      G  YL + L +G +    LDP +G L+
Sbjct:   331 LSMQALPAQPESLCIVEMGGTEKQDELGERGSIGFLYLNIGLQNGVLLRTVLDPVTGDLS 390

Query:   441 DKKKVTLGTQPTVLKTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLRQVNHMCSLNA 500
             D +   LG++P  L   R      V A S R  + YS   +   + ++   +       +
Sbjct:   391 DTRTRYLGSRPVKLFRVRMQGQEAVLAMSSRSWLSYSYQSRFHLTPLSYETLEFASGFAS 450

Query:   501 ESYPDSLALATDSTFTFGTIDEIQKLHIRTV-PLGEAPRRIAYQESSQTFGVITT 554
             E  P+ +   + +T     ++++  +  +   PL   PR+      S    +I T
Sbjct:   451 EQCPEGIVAISTNTLRILALEKLGAVFNQVAFPLQYTPRKFVIHPESNNLIIIET 505

 Score = 134 (52.2 bits), Expect = 6.9e-32, Sum P(3) = 6.9e-32
 Identities = 49/206 (23%), Positives = 94/206 (45%)

Query:  1010 IDQNTFEILHAHQLFPGEYALSLISSKFGEDPNTYFVL-GTA---VVHPEENEPKQGRII 1065
             I  NT +++   QL   E A S+   +F      ++VL G A   ++ P       G + 
Sbjct:   575 IQGNTLDLV---QLEQNEAAFSVAVCRFSNTGEDWYVLVGVAKDLILSPRS--VAGGFVY 629

Query:  1066 IFHY-DDG-KLQQIAEKEIKGACYSMCEFNGKLLASINSTVRLFEWTNEKELR-LECSHF 1122
              +   ++G KL+ + +  ++    ++  F G++L  +   +R+++   +K LR  E  H 
Sbjct:   630 TYKLVNNGEKLEFLHKTPVEEVPAAIAPFQGRVLIGVGKLLRVYDLGKKKLLRKCENKHI 689

Query:  1123 NNIIALFLKVKGDFILVGDLMRSLTLLQYKTMEGSFEEISRDYNPNWMTSIEILDDELFL 1182
              N I+  ++  G  ++V D+  S   ++YK  E      + D  P W+T+  +LD +   
Sbjct:   690 ANYIS-GIQTIGHRVIVSDVQESFIWVRYKRNENQLIIFADDTYPRWVTTASLLDYDTVA 748

Query:  1183 GAENSYNLFICQKDSAATS--DEDRT 1206
             GA+   N+ + +         DED T
Sbjct:   749 GADKFGNICVVRLPPNTNDEVDEDPT 774

 Score = 83 (34.3 bits), Expect = 6.2e-07, Sum P(3) = 6.2e-07
 Identities = 18/54 (33%), Positives = 31/54 (57%)

Query:     3 SLRIIRNGIGIEEHACIDLPGI-KGIWALSIGSPKNLDNTLVLSFVGHTRVLTL 55
             SLR++R+G+ + E A  +LPG    +W +        D  +++SFV  T VL++
Sbjct:   137 SLRVLRHGLEVSEMAVSELPGNPNAVWTVRRHIEDEFDAYIIVSFVNATLVLSI 190

 Score = 51 (23.0 bits), Expect = 6.9e-32, Sum P(3) = 6.9e-32
 Identities = 21/90 (23%), Positives = 38/90 (42%)

Query:   108 VKEPKVELLGEISIPECLTYLDNGVVFVGSRLGDSQLVKLNR--SPDENGTYVSVM---E 162
             V E +++    + +   +  L  G +FV S  G+  L ++      DE   + S M   E
Sbjct:    25 VTEIRLKYFDTVPVAAAMCVLKTGFLFVASEFGNHYLYQIAHLGDDDEEPEFSSAMPLEE 84

Query:   163 S---FTNLAPIIDMVVVDLERQGQGQLVTC 189
                 F    P+ ++V+VD E      ++ C
Sbjct:    85 GDTFFFQPRPLKNLVLVD-ELDSLSPILFC 113

 Score = 37 (18.1 bits), Expect = 6.2e-07, Sum P(3) = 6.2e-07
 Identities = 11/37 (29%), Positives = 22/37 (59%)

Query:   893 GQESILYHSGKSYVAVAPQIIKSSTIVCYAKVD-ANG 928
             GQE++L  S +S+++ + Q     T + Y  ++ A+G
Sbjct:   411 GQEAVLAMSSRSWLSYSYQSRFHLTPLSYETLEFASG 447


>UNIPROTKB|E2RR33 [details] [associations]
            symbol:SF3B3 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0071013 "catalytic step 2 spliceosome"
            evidence=IEA] [GO:0005689 "U12-type spliceosomal complex"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR004871 Pfam:PF03178 GO:GO:0003676 GO:GO:0071013
            GeneTree:ENSGT00530000063396 GO:GO:0005689 KO:K12830 OMA:FDTIPVA
            CTD:23450 EMBL:AAEX03004077 RefSeq:XP_536791.2
            Ensembl:ENSCAFT00000032086 GeneID:479659 KEGG:cfa:479659
            Uniprot:E2RR33
        Length = 1217

 Score = 305 (112.4 bits), Expect = 8.1e-32, Sum P(3) = 8.1e-32
 Identities = 105/415 (25%), Positives = 183/415 (44%)

Query:   160 VMESFTNLAPIIDMVVVDLERQGQGQLVTCSGGFKEGSLRIIRNGIGIEEHACIDLPGI- 218
             +++   +L+PI+   + DL  +   QL    G     SLR++R+G+ + E A  +LPG  
Sbjct:   397 LVDELDSLSPILFCQIADLANEDTPQLYVACGRGPRSSLRVLRHGLEVSEMAVSELPGNP 456

Query:   219 KGIWALSIGSPKNLDNTLVLSFVGHTRVLTLSGAEVEETEMGGFTSDQQTFYCGNVDPRT 278
               +W +        D  +++SFV  T VL++ G  VEE    GF     T  C  +    
Sbjct:   457 NAVWTVRRHIEDEFDAYIIVSFVNATLVLSI-GETVEEVTDSGFLGTTPTLSCSLLGDDA 515

Query:   279 VLQVTPSAAILISTESKARVSSWEPPNGKSISVVSCNKNQVLCA-TGCDVYYLEVHGS-E 336
             ++QV P     I  +   RV+ W+ P  K+I   + N+ QV+ A TG ++ Y E+  S +
Sbjct:   516 LVQVYPDGIRHIRADK--RVNEWKTPGKKTIVKCAVNQRQVVIALTGGELVYFEMDPSGQ 573

Query:   337 IKQLAHRA-LEYEVACLDISPLSNEETSSEPAKAQLAAVGLWTDISARLLSL-PS--L-- 390
             + +   R  +  +V C+    L+N     +  +++  AVGL  D + R++SL PS  L  
Sbjct:   574 LNEYTERKEMSADVVCMS---LANVPPGEQ--RSRFLAVGL-VDNTVRIISLDPSDCLQP 627

Query:   391 ----------EEVCKEPLGGEIIPRSILMTCFEGHCYLLVALGDGSMFYFSLDPASGRLT 440
                       E +C   +GG      +      G  YL + L +G +    LDP +G L+
Sbjct:   628 LSMQALPAQPESLCIVEMGGTEKQDELGERGSIGFLYLNIGLQNGVLLRTVLDPVTGDLS 687

Query:   441 DKKKVTLGTQPTVLKTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLRQVNHMCSLNA 500
             D +   LG++P  L   R      V A S R  + YS   +   + ++   +       +
Sbjct:   688 DTRTRYLGSRPVKLFRVRMQGQEAVLAMSSRSWLSYSYQSRFHLTPLSYETLEFASGFAS 747

Query:   501 ESYPDSLALATDSTFTFGTIDEIQKLHIRTV-PLGEAPRRIAYQESSQTFGVITT 554
             E  P+ +   + +T     ++++  +  +   PL   PR+      S    +I T
Sbjct:   748 EQCPEGIVAISTNTLRILALEKLGAVFNQVAFPLQYTPRKFVIHPESNNLIIIET 802

 Score = 139 (54.0 bits), Expect = 8.1e-32, Sum P(3) = 8.1e-32
 Identities = 60/259 (23%), Positives = 118/259 (45%)

Query:   959 EPKVELLGEHCKGPVVEMSSLSYIKPGSTKQSTANQPADFNME-VEVHNLLI-IDQNTFE 1016
             E  VE  GE  +    EM++ +++   +  +S    P   N +   V  ++  I  NT +
Sbjct:   821 EEMVEAAGEDERELAAEMAA-AFLNE-NLPESIFGAPKAGNGQWASVIRVMNPIQGNTLD 878

Query:  1017 ILHAHQLFPGEYALSLISSKFGEDPNTYFVL-GTA---VVHPEENEPKQGRIIIFHY-DD 1071
             ++   QL   E A S+   +F    + ++VL G A   +++P       G +  +   ++
Sbjct:   879 LV---QLEQNEAAFSVAVCRFSNTGDDWYVLVGVAKDLILNPRS--VAGGFVYTYKLVNN 933

Query:  1072 G-KLQQIAEKEIKGACYSMCEFNGKLLASINSTVRLFEWTNEKELR-LECSHFNNIIALF 1129
             G KL+ + +  ++    ++  F G++L  +   +R+++   +K LR  E  H  N I+  
Sbjct:   934 GEKLEFLHKTPVEEVPAAIAPFQGRVLIGVGKLLRVYDLGKKKLLRKCENKHIANYIS-G 992

Query:  1130 LKVKGDFILVGDLMRSLTLLQYKTMEGSFEEISRDYNPNWMTSIEILDDELFLGAENSYN 1189
             ++  G  ++V D+  S   ++YK  E      + D  P W+T+  +LD +   GA+   N
Sbjct:   993 IQTIGHRVIVSDVQESFIWVRYKRNENQLIIFADDTYPRWVTTASLLDYDTVAGADKFGN 1052

Query:  1190 LFICQKDSAATS--DEDRT 1206
             + + +         DED T
Sbjct:  1053 ICVVRLPPNTNDEVDEDPT 1071

 Score = 83 (34.3 bits), Expect = 4.9e-07, Sum P(3) = 4.9e-07
 Identities = 18/54 (33%), Positives = 31/54 (57%)

Query:     3 SLRIIRNGIGIEEHACIDLPGI-KGIWALSIGSPKNLDNTLVLSFVGHTRVLTL 55
             SLR++R+G+ + E A  +LPG    +W +        D  +++SFV  T VL++
Sbjct:   434 SLRVLRHGLEVSEMAVSELPGNPNAVWTVRRHIEDEFDAYIIVSFVNATLVLSI 487

 Score = 51 (23.0 bits), Expect = 8.1e-32, Sum P(3) = 8.1e-32
 Identities = 21/90 (23%), Positives = 38/90 (42%)

Query:   108 VKEPKVELLGEISIPECLTYLDNGVVFVGSRLGDSQLVKLNR--SPDENGTYVSVM---E 162
             V E +++    + +   +  L  G +FV S  G+  L ++      DE   + S M   E
Sbjct:   322 VTEIRLKYFDTVPVAAAMCVLKTGFLFVASEFGNHYLYQIAHLGDDDEEPEFSSAMPLEE 381

Query:   163 S---FTNLAPIIDMVVVDLERQGQGQLVTC 189
                 F    P+ ++V+VD E      ++ C
Sbjct:   382 GDTFFFQPRPLKNLVLVD-ELDSLSPILFC 410

 Score = 37 (18.1 bits), Expect = 4.9e-07, Sum P(3) = 4.9e-07
 Identities = 11/37 (29%), Positives = 22/37 (59%)

Query:   893 GQESILYHSGKSYVAVAPQIIKSSTIVCYAKVD-ANG 928
             GQE++L  S +S+++ + Q     T + Y  ++ A+G
Sbjct:   708 GQEAVLAMSSRSWLSYSYQSRFHLTPLSYETLEFASG 744


>UNIPROTKB|A0JN52 [details] [associations]
            symbol:SF3B3 "Splicing factor 3B subunit 3" species:9913
            "Bos taurus" [GO:0071013 "catalytic step 2 spliceosome"
            evidence=IEA] [GO:0005689 "U12-type spliceosomal complex"
            evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397
            "mRNA processing" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] InterPro:IPR004871 Pfam:PF03178 GO:GO:0008380
            GO:GO:0006397 GO:GO:0003676 GO:GO:0071013 eggNOG:NOG247734
            GeneTree:ENSGT00530000063396 GO:GO:0005689 KO:K12830
            HOGENOM:HOG000216677 OMA:FDTIPVA EMBL:BC126518 IPI:IPI00690059
            RefSeq:NP_001071319.1 UniGene:Bt.7895 ProteinModelPortal:A0JN52
            STRING:A0JN52 PRIDE:A0JN52 Ensembl:ENSBTAT00000014050 GeneID:504962
            KEGG:bta:504962 CTD:23450 HOVERGEN:HBG093942 InParanoid:A0JN52
            OrthoDB:EOG4RV2QJ BioCyc:CATTLE:504962-MONOMER BindingDB:A0JN52
            NextBio:20866909 ArrayExpress:A0JN52 Uniprot:A0JN52
        Length = 1217

 Score = 305 (112.4 bits), Expect = 1.0e-31, Sum P(3) = 1.0e-31
 Identities = 105/415 (25%), Positives = 183/415 (44%)

Query:   160 VMESFTNLAPIIDMVVVDLERQGQGQLVTCSGGFKEGSLRIIRNGIGIEEHACIDLPGI- 218
             +++   +L+PI+   + DL  +   QL    G     SLR++R+G+ + E A  +LPG  
Sbjct:   397 LVDELDSLSPILFCQIADLANEDTPQLYVACGRGPRSSLRVLRHGLEVSEMAVSELPGNP 456

Query:   219 KGIWALSIGSPKNLDNTLVLSFVGHTRVLTLSGAEVEETEMGGFTSDQQTFYCGNVDPRT 278
               +W +        D  +++SFV  T VL++ G  VEE    GF     T  C  +    
Sbjct:   457 NAVWTVRRHIEDEFDAYIIVSFVNATLVLSI-GETVEEVTDSGFLGTTPTLSCSLLGDDA 515

Query:   279 VLQVTPSAAILISTESKARVSSWEPPNGKSISVVSCNKNQVLCA-TGCDVYYLEVHGS-E 336
             ++QV P     I  +   RV+ W+ P  K+I   + N+ QV+ A TG ++ Y E+  S +
Sbjct:   516 LVQVYPDGIRHIRADK--RVNEWKTPGKKTIVKCAVNQRQVVIALTGGELVYFEMDPSGQ 573

Query:   337 IKQLAHRA-LEYEVACLDISPLSNEETSSEPAKAQLAAVGLWTDISARLLSL-PS--L-- 390
             + +   R  +  +V C+    L+N     +  +++  AVGL  D + R++SL PS  L  
Sbjct:   574 LNEYTERKEMSADVVCMS---LANVPPGEQ--RSRFLAVGL-VDNTVRIISLDPSDCLQP 627

Query:   391 ----------EEVCKEPLGGEIIPRSILMTCFEGHCYLLVALGDGSMFYFSLDPASGRLT 440
                       E +C   +GG      +      G  YL + L +G +    LDP +G L+
Sbjct:   628 LSMQALPAQPESLCIVEMGGTEKQDELGERGSIGFLYLNIGLQNGVLLRTVLDPVTGDLS 687

Query:   441 DKKKVTLGTQPTVLKTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLRQVNHMCSLNA 500
             D +   LG++P  L   R      V A S R  + YS   +   + ++   +       +
Sbjct:   688 DTRTRYLGSRPVKLFRVRMQGQEAVLAMSSRSWLSYSYQSRFHLTPLSYETLEFASGFAS 747

Query:   501 ESYPDSLALATDSTFTFGTIDEIQKLHIRTV-PLGEAPRRIAYQESSQTFGVITT 554
             E  P+ +   + +T     ++++  +  +   PL   PR+      S    +I T
Sbjct:   748 EQCPEGIVAISTNTLRILALEKLGAVFNQVAFPLQYTPRKFVIHPESNNLIIIET 802

 Score = 138 (53.6 bits), Expect = 1.0e-31, Sum P(3) = 1.0e-31
 Identities = 60/259 (23%), Positives = 117/259 (45%)

Query:   959 EPKVELLGEHCKGPVVEMSSLSYIKPGSTKQSTANQPADFNME-VEVHNLLI-IDQNTFE 1016
             E  VE  GE  +    EM++ +++   +  +S    P   N +   V  ++  I  NT +
Sbjct:   821 EEMVEAAGEDERELAAEMAA-AFLNE-NLPESIFGAPKAGNGQWASVIRVMNPIQGNTLD 878

Query:  1017 ILHAHQLFPGEYALSLISSKFGEDPNTYFVL-GTA---VVHPEENEPKQGRIIIFHY-DD 1071
             ++   QL   E A S+   +F      ++VL G A   +++P       G +  +   ++
Sbjct:   879 LV---QLEQNEAAFSVAVCRFSNTGEDWYVLVGVAKDLILNPRS--VAGGFVYTYKLVNN 933

Query:  1072 G-KLQQIAEKEIKGACYSMCEFNGKLLASINSTVRLFEWTNEKELR-LECSHFNNIIALF 1129
             G KL+ + +  ++    ++  F G++L  +   +R+++   +K LR  E  H  N I+  
Sbjct:   934 GEKLEFLHKTPVEEVPAAIAPFQGRVLIGVGKLLRVYDLGKKKLLRKCENKHIANYIS-G 992

Query:  1130 LKVKGDFILVGDLMRSLTLLQYKTMEGSFEEISRDYNPNWMTSIEILDDELFLGAENSYN 1189
             ++  G  ++V D+  S   ++YK  E      + D  P W+T+  +LD +   GA+   N
Sbjct:   993 IQTIGHRVIVSDVQESFIWVRYKRNENQLIIFADDTYPRWVTTASLLDYDTVAGADKFGN 1052

Query:  1190 LFICQKDSAATS--DEDRT 1206
             + + +         DED T
Sbjct:  1053 ICVVRLPPNTNDEVDEDPT 1071

 Score = 83 (34.3 bits), Expect = 6.3e-07, Sum P(3) = 6.3e-07
 Identities = 18/54 (33%), Positives = 31/54 (57%)

Query:     3 SLRIIRNGIGIEEHACIDLPGI-KGIWALSIGSPKNLDNTLVLSFVGHTRVLTL 55
             SLR++R+G+ + E A  +LPG    +W +        D  +++SFV  T VL++
Sbjct:   434 SLRVLRHGLEVSEMAVSELPGNPNAVWTVRRHIEDEFDAYIIVSFVNATLVLSI 487

 Score = 51 (23.0 bits), Expect = 1.0e-31, Sum P(3) = 1.0e-31
 Identities = 21/90 (23%), Positives = 38/90 (42%)

Query:   108 VKEPKVELLGEISIPECLTYLDNGVVFVGSRLGDSQLVKLNR--SPDENGTYVSVM---E 162
             V E +++    + +   +  L  G +FV S  G+  L ++      DE   + S M   E
Sbjct:   322 VTEIRLKYFDTVPVAAAMCVLKTGFLFVASEFGNHYLYQIAHLGDDDEEPEFSSAMPLEE 381

Query:   163 S---FTNLAPIIDMVVVDLERQGQGQLVTC 189
                 F    P+ ++V+VD E      ++ C
Sbjct:   382 GDTFFFQPRPLKNLVLVD-ELDSLSPILFC 410

 Score = 37 (18.1 bits), Expect = 6.3e-07, Sum P(3) = 6.3e-07
 Identities = 11/37 (29%), Positives = 22/37 (59%)

Query:   893 GQESILYHSGKSYVAVAPQIIKSSTIVCYAKVD-ANG 928
             GQE++L  S +S+++ + Q     T + Y  ++ A+G
Sbjct:   708 GQEAVLAMSSRSWLSYSYQSRFHLTPLSYETLEFASG 744


>UNIPROTKB|Q15393 [details] [associations]
            symbol:SF3B3 "Splicing factor 3B subunit 3" species:9606
            "Homo sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000375 "RNA splicing, via transesterification reactions"
            evidence=TAS] [GO:0000398 "mRNA splicing, via spliceosome"
            evidence=IC;TAS] [GO:0071013 "catalytic step 2 spliceosome"
            evidence=IDA] [GO:0005689 "U12-type spliceosomal complex"
            evidence=IDA] [GO:0030532 "small nuclear ribonucleoprotein complex"
            evidence=TAS] [GO:0005681 "spliceosomal complex" evidence=TAS]
            [GO:0006397 "mRNA processing" evidence=TAS] [GO:0006461 "protein
            complex assembly" evidence=TAS] [GO:0005654 "nucleoplasm"
            evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
            "gene expression" evidence=TAS] Reactome:REACT_71
            InterPro:IPR004871 Pfam:PF03178 GO:GO:0005654 GO:GO:0006461
            Reactome:REACT_1675 GO:GO:0003676 GO:GO:0000398 GO:GO:0071013
            GO:GO:0030532 eggNOG:NOG247734 GO:GO:0005689 KO:K12830
            HOGENOM:HOG000216677 OMA:FDTIPVA CTD:23450 HOVERGEN:HBG093942
            OrthoDB:EOG4RV2QJ EMBL:AJ001443 EMBL:D87686 EMBL:D13642
            EMBL:BC000463 EMBL:BC003146 EMBL:BC009780 EMBL:BC068974
            EMBL:AL110251 IPI:IPI00179138 IPI:IPI00300371 IPI:IPI00828110
            PIR:T14779 RefSeq:NP_036558.3 UniGene:Hs.514435
            ProteinModelPortal:Q15393 DIP:DIP-28152N IntAct:Q15393
            MINT:MINT-1402891 STRING:Q15393 PhosphoSite:Q15393 DMDM:116242787
            PaxDb:Q15393 PeptideAtlas:Q15393 PRIDE:Q15393
            Ensembl:ENST00000302516 GeneID:23450 KEGG:hsa:23450 UCSC:uc002ezf.3
            GeneCards:GC16P070557 HGNC:HGNC:10770 HPA:HPA042986 MIM:605592
            neXtProt:NX_Q15393 PharmGKB:PA35688 InParanoid:Q15393
            PhylomeDB:Q15393 BindingDB:Q15393 ChEMBL:CHEMBL1250378
            GenomeRNAi:23450 NextBio:45731 ArrayExpress:Q15393 Bgee:Q15393
            CleanEx:HS_SAP130 CleanEx:HS_SF3B3 Genevestigator:Q15393
            GermOnline:ENSG00000189091 Uniprot:Q15393
        Length = 1217

 Score = 305 (112.4 bits), Expect = 1.0e-31, Sum P(3) = 1.0e-31
 Identities = 105/415 (25%), Positives = 183/415 (44%)

Query:   160 VMESFTNLAPIIDMVVVDLERQGQGQLVTCSGGFKEGSLRIIRNGIGIEEHACIDLPGI- 218
             +++   +L+PI+   + DL  +   QL    G     SLR++R+G+ + E A  +LPG  
Sbjct:   397 LVDELDSLSPILFCQIADLANEDTPQLYVACGRGPRSSLRVLRHGLEVSEMAVSELPGNP 456

Query:   219 KGIWALSIGSPKNLDNTLVLSFVGHTRVLTLSGAEVEETEMGGFTSDQQTFYCGNVDPRT 278
               +W +        D  +++SFV  T VL++ G  VEE    GF     T  C  +    
Sbjct:   457 NAVWTVRRHIEDEFDAYIIVSFVNATLVLSI-GETVEEVTDSGFLGTTPTLSCSLLGDDA 515

Query:   279 VLQVTPSAAILISTESKARVSSWEPPNGKSISVVSCNKNQVLCA-TGCDVYYLEVHGS-E 336
             ++QV P     I  +   RV+ W+ P  K+I   + N+ QV+ A TG ++ Y E+  S +
Sbjct:   516 LVQVYPDGIRHIRADK--RVNEWKTPGKKTIVKCAVNQRQVVIALTGGELVYFEMDPSGQ 573

Query:   337 IKQLAHRA-LEYEVACLDISPLSNEETSSEPAKAQLAAVGLWTDISARLLSL-PS--L-- 390
             + +   R  +  +V C+    L+N     +  +++  AVGL  D + R++SL PS  L  
Sbjct:   574 LNEYTERKEMSADVVCMS---LANVPPGEQ--RSRFLAVGL-VDNTVRIISLDPSDCLQP 627

Query:   391 ----------EEVCKEPLGGEIIPRSILMTCFEGHCYLLVALGDGSMFYFSLDPASGRLT 440
                       E +C   +GG      +      G  YL + L +G +    LDP +G L+
Sbjct:   628 LSMQALPAQPESLCIVEMGGTEKQDELGERGSIGFLYLNIGLQNGVLLRTVLDPVTGDLS 687

Query:   441 DKKKVTLGTQPTVLKTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLRQVNHMCSLNA 500
             D +   LG++P  L   R      V A S R  + YS   +   + ++   +       +
Sbjct:   688 DTRTRYLGSRPVKLFRVRMQGQEAVLAMSSRSWLSYSYQSRFHLTPLSYETLEFASGFAS 747

Query:   501 ESYPDSLALATDSTFTFGTIDEIQKLHIRTV-PLGEAPRRIAYQESSQTFGVITT 554
             E  P+ +   + +T     ++++  +  +   PL   PR+      S    +I T
Sbjct:   748 EQCPEGIVAISTNTLRILALEKLGAVFNQVAFPLQYTPRKFVIHPESNNLIIIET 802

 Score = 138 (53.6 bits), Expect = 1.0e-31, Sum P(3) = 1.0e-31
 Identities = 60/259 (23%), Positives = 117/259 (45%)

Query:   959 EPKVELLGEHCKGPVVEMSSLSYIKPGSTKQSTANQPADFNME-VEVHNLLI-IDQNTFE 1016
             E  VE  GE  +    EM++ +++   +  +S    P   N +   V  ++  I  NT +
Sbjct:   821 EEMVEAAGEDERELAAEMAA-AFLNE-NLPESIFGAPKAGNGQWASVIRVMNPIQGNTLD 878

Query:  1017 ILHAHQLFPGEYALSLISSKFGEDPNTYFVL-GTA---VVHPEENEPKQGRIIIFHY-DD 1071
             ++   QL   E A S+   +F      ++VL G A   +++P       G +  +   ++
Sbjct:   879 LV---QLEQNEAAFSVAVCRFSNTGEDWYVLVGVAKDLILNPRS--VAGGFVYTYKLVNN 933

Query:  1072 G-KLQQIAEKEIKGACYSMCEFNGKLLASINSTVRLFEWTNEKELR-LECSHFNNIIALF 1129
             G KL+ + +  ++    ++  F G++L  +   +R+++   +K LR  E  H  N I+  
Sbjct:   934 GEKLEFLHKTPVEEVPAAIAPFQGRVLIGVGKLLRVYDLGKKKLLRKCENKHIANYIS-G 992

Query:  1130 LKVKGDFILVGDLMRSLTLLQYKTMEGSFEEISRDYNPNWMTSIEILDDELFLGAENSYN 1189
             ++  G  ++V D+  S   ++YK  E      + D  P W+T+  +LD +   GA+   N
Sbjct:   993 IQTIGHRVIVSDVQESFIWVRYKRNENQLIIFADDTYPRWVTTASLLDYDTVAGADKFGN 1052

Query:  1190 LFICQKDSAATS--DEDRT 1206
             + + +         DED T
Sbjct:  1053 ICVVRLPPNTNDEVDEDPT 1071

 Score = 83 (34.3 bits), Expect = 6.3e-07, Sum P(3) = 6.3e-07
 Identities = 18/54 (33%), Positives = 31/54 (57%)

Query:     3 SLRIIRNGIGIEEHACIDLPGI-KGIWALSIGSPKNLDNTLVLSFVGHTRVLTL 55
             SLR++R+G+ + E A  +LPG    +W +        D  +++SFV  T VL++
Sbjct:   434 SLRVLRHGLEVSEMAVSELPGNPNAVWTVRRHIEDEFDAYIIVSFVNATLVLSI 487

 Score = 51 (23.0 bits), Expect = 1.0e-31, Sum P(3) = 1.0e-31
 Identities = 21/90 (23%), Positives = 38/90 (42%)

Query:   108 VKEPKVELLGEISIPECLTYLDNGVVFVGSRLGDSQLVKLNR--SPDENGTYVSVM---E 162
             V E +++    + +   +  L  G +FV S  G+  L ++      DE   + S M   E
Sbjct:   322 VTEIRLKYFDTVPVAAAMCVLKTGFLFVASEFGNHYLYQIAHLGDDDEEPEFSSAMPLEE 381

Query:   163 S---FTNLAPIIDMVVVDLERQGQGQLVTC 189
                 F    P+ ++V+VD E      ++ C
Sbjct:   382 GDTFFFQPRPLKNLVLVD-ELDSLSPILFC 410

 Score = 37 (18.1 bits), Expect = 6.3e-07, Sum P(3) = 6.3e-07
 Identities = 11/37 (29%), Positives = 22/37 (59%)

Query:   893 GQESILYHSGKSYVAVAPQIIKSSTIVCYAKVD-ANG 928
             GQE++L  S +S+++ + Q     T + Y  ++ A+G
Sbjct:   708 GQEAVLAMSSRSWLSYSYQSRFHLTPLSYETLEFASG 744


>MGI|MGI:1289341 [details] [associations]
            symbol:Sf3b3 "splicing factor 3b, subunit 3" species:10090
            "Mus musculus" [GO:0003674 "molecular_function" evidence=ND]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0005681 "spliceosomal complex"
            evidence=IEA] [GO:0005689 "U12-type spliceosomal complex"
            evidence=ISO] [GO:0006397 "mRNA processing" evidence=IEA]
            [GO:0008380 "RNA splicing" evidence=IEA] [GO:0071013 "catalytic
            step 2 spliceosome" evidence=ISO] InterPro:IPR004871 Pfam:PF03178
            MGI:MGI:1289341 GO:GO:0008380 GO:GO:0006397 GO:GO:0003676
            GO:GO:0071013 eggNOG:NOG247734 GeneTree:ENSGT00530000063396
            HSSP:Q16531 GO:GO:0005689 KO:K12830 HOGENOM:HOG000216677
            OMA:FDTIPVA CTD:23450 HOVERGEN:HBG093942 OrthoDB:EOG4RV2QJ
            EMBL:AK085705 EMBL:AK088268 EMBL:AK129035 EMBL:AK147914
            EMBL:BC011412 EMBL:BC031197 EMBL:BC042580 IPI:IPI00122011
            IPI:IPI00625759 RefSeq:NP_598714.1 UniGene:Mm.236123
            ProteinModelPortal:Q921M3 IntAct:Q921M3 STRING:Q921M3
            PhosphoSite:Q921M3 PaxDb:Q921M3 PRIDE:Q921M3
            Ensembl:ENSMUST00000042012 GeneID:101943 KEGG:mmu:101943
            UCSC:uc009nlc.1 InParanoid:Q921M3 NextBio:355190 Bgee:Q921M3
            CleanEx:MM_SF3B3 Genevestigator:Q921M3 Uniprot:Q921M3
        Length = 1217

 Score = 305 (112.4 bits), Expect = 1.6e-31, Sum P(3) = 1.6e-31
 Identities = 105/415 (25%), Positives = 183/415 (44%)

Query:   160 VMESFTNLAPIIDMVVVDLERQGQGQLVTCSGGFKEGSLRIIRNGIGIEEHACIDLPGI- 218
             +++   +L+PI+   + DL  +   QL    G     SLR++R+G+ + E A  +LPG  
Sbjct:   397 LVDELDSLSPILFCQIADLANEDTPQLYVACGRGPRSSLRVLRHGLEVSEMAVSELPGNP 456

Query:   219 KGIWALSIGSPKNLDNTLVLSFVGHTRVLTLSGAEVEETEMGGFTSDQQTFYCGNVDPRT 278
               +W +        D  +++SFV  T VL++ G  VEE    GF     T  C  +    
Sbjct:   457 NAVWTVRRHIEDEFDAYIIVSFVNATLVLSI-GETVEEVTDSGFLGTTPTLSCSLLGDDA 515

Query:   279 VLQVTPSAAILISTESKARVSSWEPPNGKSISVVSCNKNQVLCA-TGCDVYYLEVHGS-E 336
             ++QV P     I  +   RV+ W+ P  K+I   + N+ QV+ A TG ++ Y E+  S +
Sbjct:   516 LVQVYPDGIRHIRADK--RVNEWKTPGKKTIVKCAVNQRQVVIALTGGELVYFEMDPSGQ 573

Query:   337 IKQLAHRA-LEYEVACLDISPLSNEETSSEPAKAQLAAVGLWTDISARLLSL-PS--L-- 390
             + +   R  +  +V C+    L+N     +  +++  AVGL  D + R++SL PS  L  
Sbjct:   574 LNEYTERKEMSADVVCMS---LANVPPGEQ--RSRFLAVGL-VDNTVRIISLDPSDCLQP 627

Query:   391 ----------EEVCKEPLGGEIIPRSILMTCFEGHCYLLVALGDGSMFYFSLDPASGRLT 440
                       E +C   +GG      +      G  YL + L +G +    LDP +G L+
Sbjct:   628 LSMQALPAQPESLCIVEMGGTEKQDELGERGSIGFLYLNIGLQNGVLLRTVLDPVTGDLS 687

Query:   441 DKKKVTLGTQPTVLKTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLRQVNHMCSLNA 500
             D +   LG++P  L   R      V A S R  + YS   +   + ++   +       +
Sbjct:   688 DTRTRYLGSRPVKLFRVRMQGQEAVLAMSSRSWLSYSYQSRFHLTPLSYETLEFASGFAS 747

Query:   501 ESYPDSLALATDSTFTFGTIDEIQKLHIRTV-PLGEAPRRIAYQESSQTFGVITT 554
             E  P+ +   + +T     ++++  +  +   PL   PR+      S    +I T
Sbjct:   748 EQCPEGIVAISTNTLRILALEKLGAVFNQVAFPLQYTPRKFVIHPESNNLIIIET 802

 Score = 136 (52.9 bits), Expect = 1.6e-31, Sum P(3) = 1.6e-31
 Identities = 60/259 (23%), Positives = 116/259 (44%)

Query:   959 EPKVELLGEHCKGPVVEMSSLSYIKPGSTKQSTANQPADFNME-VEVHNLLI-IDQNTFE 1016
             E  VE  GE  +    EM++ +++   +  +S    P   N +   V  ++  I  NT +
Sbjct:   821 EEMVEAAGEDERELAAEMAA-AFLNE-NLPESIFGAPKAGNGQWASVIRVMNPIQGNTLD 878

Query:  1017 ILHAHQLFPGEYALSLISSKFGEDPNTYFVL-GTA---VVHPEENEPKQGRIIIFHY-DD 1071
             ++   QL   E A S+   +F      ++VL G A   ++ P       G +  +   ++
Sbjct:   879 LV---QLEQNEAAFSVAVCRFSNTGEDWYVLVGVAKDLILSPRS--VAGGFVYTYKLVNN 933

Query:  1072 G-KLQQIAEKEIKGACYSMCEFNGKLLASINSTVRLFEWTNEKELR-LECSHFNNIIALF 1129
             G KL+ + +  ++    ++  F G++L  +   +R+++   +K LR  E  H  N I+  
Sbjct:   934 GEKLEFLHKTPVEEVPAAIAPFQGRVLIGVGKLLRVYDLGKKKLLRKCENKHIANYIS-G 992

Query:  1130 LKVKGDFILVGDLMRSLTLLQYKTMEGSFEEISRDYNPNWMTSIEILDDELFLGAENSYN 1189
             ++  G  ++V D+  S   ++YK  E      + D  P W+T+  +LD +   GA+   N
Sbjct:   993 IQTIGHRVIVSDVQESFIWVRYKRNENQLIIFADDTYPRWVTTASLLDYDTVAGADKFGN 1052

Query:  1190 LFICQKDSAATS--DEDRT 1206
             + + +         DED T
Sbjct:  1053 ICVVRLPPNTNDEVDEDPT 1071

 Score = 83 (34.3 bits), Expect = 1.0e-06, Sum P(3) = 1.0e-06
 Identities = 18/54 (33%), Positives = 31/54 (57%)

Query:     3 SLRIIRNGIGIEEHACIDLPGI-KGIWALSIGSPKNLDNTLVLSFVGHTRVLTL 55
             SLR++R+G+ + E A  +LPG    +W +        D  +++SFV  T VL++
Sbjct:   434 SLRVLRHGLEVSEMAVSELPGNPNAVWTVRRHIEDEFDAYIIVSFVNATLVLSI 487

 Score = 51 (23.0 bits), Expect = 1.6e-31, Sum P(3) = 1.6e-31
 Identities = 21/90 (23%), Positives = 38/90 (42%)

Query:   108 VKEPKVELLGEISIPECLTYLDNGVVFVGSRLGDSQLVKLNR--SPDENGTYVSVM---E 162
             V E +++    + +   +  L  G +FV S  G+  L ++      DE   + S M   E
Sbjct:   322 VTEIRLKYFDTVPVAAAMCVLKTGFLFVASEFGNHYLYQIAHLGDDDEEPEFSSAMPLEE 381

Query:   163 S---FTNLAPIIDMVVVDLERQGQGQLVTC 189
                 F    P+ ++V+VD E      ++ C
Sbjct:   382 GDTFFFQPRPLKNLVLVD-ELDSLSPILFC 410

 Score = 37 (18.1 bits), Expect = 1.0e-06, Sum P(3) = 1.0e-06
 Identities = 11/37 (29%), Positives = 22/37 (59%)

Query:   893 GQESILYHSGKSYVAVAPQIIKSSTIVCYAKVD-ANG 928
             GQE++L  S +S+++ + Q     T + Y  ++ A+G
Sbjct:   708 GQEAVLAMSSRSWLSYSYQSRFHLTPLSYETLEFASG 744


>ZFIN|ZDB-GENE-040426-2901 [details] [associations]
            symbol:sf3b3 "splicing factor 3b, subunit 3"
            species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005681
            "spliceosomal complex" evidence=IEA] [GO:0006397 "mRNA processing"
            evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
            InterPro:IPR017986 InterPro:IPR004871 InterPro:IPR015943
            Pfam:PF03178 ZFIN:ZDB-GENE-040426-2901 GO:GO:0008380
            Gene3D:2.130.10.10 SUPFAM:SSF50978 GO:GO:0006397 GO:GO:0005681
            GO:GO:0003676 eggNOG:NOG247734 GeneTree:ENSGT00530000063396
            KO:K12830 HOGENOM:HOG000216677 OMA:FDTIPVA CTD:23450
            HOVERGEN:HBG093942 OrthoDB:EOG4RV2QJ EMBL:BX784024 EMBL:BC047171
            IPI:IPI00508652 RefSeq:NP_998668.1 RefSeq:XP_002667683.2
            UniGene:Dr.76176 STRING:Q1LVE8 PRIDE:Q1LVE8
            Ensembl:ENSDART00000008310 Ensembl:ENSDART00000122831
            Ensembl:ENSDART00000129666 Ensembl:ENSDART00000147743
            GeneID:100334114 GeneID:406824 KEGG:dre:100334114 KEGG:dre:406824
            InParanoid:Q1LVE8 NextBio:20818331 Bgee:Q1LVE8 Uniprot:Q1LVE8
        Length = 1217

 Score = 299 (110.3 bits), Expect = 1.7e-31, Sum P(3) = 1.7e-31
 Identities = 109/426 (25%), Positives = 189/426 (44%)

Query:   151 PDENGTYVSVMESFTNLAPIIDMVVVDLERQGQGQLVTCSGGFKEGSLRIIRNGIGIEEH 210
             P +N   V   ES   L+PI+   + DL  +   QL    G     +LR++R+G+ + E 
Sbjct:   391 PLKNLVLVDEQES---LSPIMSCQIADLANEDTPQLYVACGRGPRSTLRVLRHGLEVSEM 447

Query:   211 ACIDLPGI-KGIWALSIGSPKNLDNTLVLSFVGHTRVLTLSGAEVEETEMGGFTSDQQTF 269
             A  +LPG    +W +        D  +++SFV  T VL++ G  VEE    GF     T 
Sbjct:   448 AVSELPGNPNAVWTVRRHVEDEFDAYIIVSFVNATLVLSI-GETVEEVTDSGFLGTTPTL 506

Query:   270 YCGNVDPRTVLQVTPSAAILISTESKARVSSWEPPNGKSISVVSCNKNQVLCA-TGCDVY 328
              C  +    ++QV P     I  +   RV+ W+ P  K+I   + N+ QV+ A TG ++ 
Sbjct:   507 SCSLLGEDALVQVYPDGIRHIRADK--RVNEWKTPGKKTIIRCAVNQRQVVIALTGGELV 564

Query:   329 YLEVHGS-EIKQLAHRA-LEYEVACLDISPLSNEETSSEPAKAQLAAVGLWTDISARLLS 386
             Y E+  S ++ +   R  +  +V C+    L+N     +  +++  AVGL  D + R++S
Sbjct:   565 YFEMDPSGQLNEYTERKEMSADVVCMS---LANVPPGEQ--RSRFLAVGL-VDNTVRIIS 618

Query:   387 L-PS--LEEVCKEPLGGEIIPRSIL---MTCFE-----------GHCYLLVALGDGSMFY 429
             L PS  L+ +  + L  +  P S+    M   E           G  YL + L +G +  
Sbjct:   619 LDPSDCLQPLSMQALPAQ--PESLCIVEMGGVEKQDELGEKGTIGFLYLNIGLQNGVLLR 676

Query:   430 FSLDPASGRLTDKKKVTLGTQPTVLKTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNL 489
               LDP +G L+D +   LG++P  L   R      V A S R  + YS   +   + ++ 
Sbjct:   677 TVLDPVTGDLSDTRTRYLGSRPVKLFRVRMQGQEAVLAMSSRSWLSYSYQSRFHLTPLSY 736

Query:   490 RQVNHMCSLNAESYPDSLALATDSTFTFGTIDEIQKLHIRTV-PLGEAPRRIAYQESSQT 548
               + +     +E  P+ +   + +T     ++++  +  +   PL   PR+      +  
Sbjct:   737 ETLEYASGFASEQCPEGIVAISTNTLRILALEKLGAVFNQVAFPLQYTPRKFVIHPETNN 796

Query:   549 FGVITT 554
               +I T
Sbjct:   797 LILIET 802

 Score = 133 (51.9 bits), Expect = 1.7e-31, Sum P(3) = 1.7e-31
 Identities = 48/206 (23%), Positives = 96/206 (46%)

Query:  1010 IDQNTFEILHAHQLFPGEYALSLISSKFGEDPNTYFVL-GTA---VVHPEENEPKQGRII 1065
             I  NT +++   QL   E A S+   +F    + ++VL G A   +++P       G I 
Sbjct:   872 IQGNTLDLV---QLEQNEAAFSVAICRFLNGGDDWYVLVGVARDMILNPRS--VGGGYIY 926

Query:  1066 IFHYDDG--KLQQIAEKEIKGACYSMCEFNGKLLASINSTVRLFEWTNEKELR-LECSHF 1122
              +    G  KL+ + +  ++    ++  F G++L  +   +R+++   +K LR  E  H 
Sbjct:   927 TYRIVGGGDKLEFLHKTPVEDVPLAIAPFQGRVLVGVGKLLRIYDLGKKKLLRKCENKHV 986

Query:  1123 NNIIALFLKVKGDFILVGDLMRSLTLLQYKTMEGSFEEISRDYNPNWMTSIEILDDELFL 1182
              N++     + G  ++V D+  SL  ++Y+  E      + D  P W+T+  +LD +   
Sbjct:   987 PNLVTGIHTI-GQRVIVSDVQESLFWVRYRRNENQLIIFADDTYPRWITTACLLDYDTMA 1045

Query:  1183 GAENSYNLFICQ--KDSAATSDEDRT 1206
              A+   N+ + +   +++   DED T
Sbjct:  1046 SADKFGNICVVRLPPNTSDDVDEDPT 1071

 Score = 80 (33.2 bits), Expect = 4.1e-06, Sum P(3) = 4.1e-06
 Identities = 17/54 (31%), Positives = 31/54 (57%)

Query:     3 SLRIIRNGIGIEEHACIDLPGI-KGIWALSIGSPKNLDNTLVLSFVGHTRVLTL 55
             +LR++R+G+ + E A  +LPG    +W +        D  +++SFV  T VL++
Sbjct:   434 TLRVLRHGLEVSEMAVSELPGNPNAVWTVRRHVEDEFDAYIIVSFVNATLVLSI 487

 Score = 60 (26.2 bits), Expect = 1.7e-31, Sum P(3) = 1.7e-31
 Identities = 22/90 (24%), Positives = 41/90 (45%)

Query:   108 VKEPKVELLGEISIPECLTYLDNGVVFVGSRLGDSQLVKLNR--SPDENGTYVSVM---E 162
             V E +++    I +   +  L  G +FV S  G+  L ++      DE   + S M   E
Sbjct:   322 VTEIRMKYFDTIPVATAMCVLKTGFLFVSSEFGNHYLYQIAHLGDDDEEPEFSSAMPLEE 381

Query:   163 S---FTNLAPIIDMVVVDLERQGQGQLVTC 189
                 F    P+ ++V+VD E++    +++C
Sbjct:   382 GDTFFFQPRPLKNLVLVD-EQESLSPIMSC 410

 Score = 37 (18.1 bits), Expect = 4.1e-06, Sum P(3) = 4.1e-06
 Identities = 11/37 (29%), Positives = 22/37 (59%)

Query:   893 GQESILYHSGKSYVAVAPQIIKSSTIVCYAKVD-ANG 928
             GQE++L  S +S+++ + Q     T + Y  ++ A+G
Sbjct:   708 GQEAVLAMSSRSWLSYSYQSRFHLTPLSYETLEYASG 744


>TAIR|locus:2100616 [details] [associations]
            symbol:SAP130a "spliceosome-associated protein 130 a"
            species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
            binding" evidence=IEA;ISS] [GO:0005634 "nucleus"
            evidence=ISM;IEA;ISS] [GO:0009507 "chloroplast" evidence=IDA]
            [GO:0005829 "cytosol" evidence=RCA] [GO:0009555 "pollen
            development" evidence=IMP] [GO:0009846 "pollen germination"
            evidence=IMP] [GO:0048481 "ovule development" evidence=IMP]
            InterPro:IPR001680 InterPro:IPR004871 InterPro:IPR015943
            Pfam:PF03178 SMART:SM00320 GO:GO:0009506 GO:GO:0005634
            GO:GO:0009507 EMBL:CP002686 Gene3D:2.130.10.10 GO:GO:0009555
            GO:GO:0003676 EMBL:AL132954 GO:GO:0048481 GO:GO:0009846
            eggNOG:NOG247734 KO:K12830 HOGENOM:HOG000216677 OMA:FDTIPVA
            IPI:IPI00517026 PIR:T47659 RefSeq:NP_567015.1 RefSeq:NP_567016.1
            UniGene:At.28226 UniGene:At.72270 ProteinModelPortal:Q9LD60
            SMR:Q9LD60 STRING:Q9LD60 PaxDb:Q9LD60 PRIDE:Q9LD60
            EnsemblPlants:AT3G55200.1 EnsemblPlants:AT3G55220.1 GeneID:824686
            GeneID:824688 KEGG:ath:AT3G55200 KEGG:ath:AT3G55220
            KEGG:dosa:Os02t0137400-01 TAIR:At3g55200 TAIR:At3g55220
            InParanoid:Q9LD60 PhylomeDB:Q9LD60 ProtClustDB:CLSN2689171
            ArrayExpress:Q9LD60 Genevestigator:Q9LD60 Uniprot:Q9LD60
        Length = 1214

 Score = 266 (98.7 bits), Expect = 7.1e-31, Sum P(2) = 7.1e-31
 Identities = 99/412 (24%), Positives = 184/412 (44%)

Query:   161 MESFTNLAPIIDMVVVDLERQGQGQLVTCSGGFKEGSLRIIRNGIGIEEHACIDLPGI-K 219
             ++   +L P++DM V+++  +   Q+ +  G     SLRI+R G+ I E A   LPG   
Sbjct:   396 IDQVESLMPLMDMKVLNIFEEETPQIFSLCGRGPRSSLRILRPGLAITEMAVSQLPGQPS 455

Query:   220 GIWALSIGSPKNLDNTLVLSFVGHTRVLTLSGAEVEETEMGGFTSDQQTFYCGNVDPRTV 279
              +W +        D  +V+SF   T VL++ G +VEE    GF     +     +   ++
Sbjct:   456 AVWTVKKNVSDEFDAYIVVSFTNATLVLSI-GEQVEEVNDSGFLDTTPSLAVSLIGDDSL 514

Query:   280 LQVTPSAAILISTESKARVSSWEPPNGKSISVVSCNKNQVLCA-TGCDVYYLEVHGS-EI 337
             +QV P+    I  +   R++ W  P  +SI  V  N+ QV+ A +G ++ Y E   + ++
Sbjct:   515 MQVHPNGIRHIREDG--RINEWRTPGKRSIVKVGYNRLQVVIALSGGELIYFEADMTGQL 572

Query:   338 KQLAHRALEYEVACLDISPLSNEETSSEPAKAQLAAVGLWTDISARLLSLPSLEEVCKEP 397
              ++    +  +VACLDI+P+      S     +  AVG + D + R+LSL    + C + 
Sbjct:   573 MEVEKHEMSGDVACLDIAPVPEGRKRS-----RFLAVGSY-DNTVRILSLDP--DDCLQI 624

Query:   398 LGGEII---PRSILMTCFEG------------HCYLLVALGDGSMFYFSLDPASGRLTDK 442
             L  + +   P S+L    +             + +L   L +G +F   +D  +G+L+D 
Sbjct:   625 LSVQSVSSAPESLLFLEVQASIGGDDGADHPANLFLNSGLQNGVLFRTVVDMVTGQLSDS 684

Query:   443 KKVTLGTQPTVLKTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLRQVNHMCSLNAES 502
             +   LG +P  L +      + +   S RP + Y        + ++   +      +++ 
Sbjct:   685 RSRFLGLKPPKLFSISVRGRSAMLCLSSRPWLGYIHRGHFHLTPLSYETLEFAAPFSSDQ 744

Query:   503 YPDSL-ALATDSTFTFGTIDEIQKLHIRTV-PLGEAPRRIAYQESSQTFGVI 552
               + + ++A D+   F  ID + +    TV PL   PR+       +   +I
Sbjct:   745 CAEGVVSVAGDALRIF-MIDRLGETFNETVVPLRYTPRKFVLHPKRKLLVII 795

 Score = 171 (65.3 bits), Expect = 7.1e-31, Sum P(2) = 7.1e-31
 Identities = 55/208 (26%), Positives = 102/208 (49%)

Query:  1009 IIDQNTFEILHAHQLFPGEYALSLISSKFGE-DPNTYFVLGTAV---VHPEENEPKQGRI 1064
             ++D  T       +L   E A S+ +  F + +  T   +GT       P++N    G I
Sbjct:   865 VLDPKTATTTCLLELQDNEAAYSVCTVNFHDKEYGTLLAVGTVKGMQFWPKKNLVA-GFI 923

Query:  1065 IIFHY-DDGKLQQIAEK-EIKGACYSMCEFNGKLLASINSTVRLFEWTNEKELRLECSH- 1121
              I+ + +DGK  ++  K +++G   ++C+F G+LLA I   +RL++   ++ LR +C + 
Sbjct:   924 HIYRFVEDGKSLELLHKTQVEGVPLALCQFQGRLLAGIGPVLRLYDLGKKRLLR-KCENK 982

Query:  1122 -FNNIIALFLKVKGDFILVGDLMRSLTLLQYKTMEGSFEEISRDYNPNWMTSIEILDDEL 1180
              F N I + ++   D I VGD+  S    +Y+  E      + D  P W+T+   +D + 
Sbjct:   983 LFPNTI-ISIQTYRDRIYVGDIQESFHYCKYRRDENQLYIFADDCVPRWLTASHHVDFDT 1041

Query:  1181 FLGAENSYNLFICQ--KDSAATSDEDRT 1206
               GA+   N++  +  +D +   +ED T
Sbjct:  1042 MAGADKFGNVYFVRLPQDLSEEIEEDPT 1069

 Score = 81 (33.6 bits), Expect = 2.4e-11, Sum P(2) = 2.4e-11
 Identities = 20/54 (37%), Positives = 28/54 (51%)

Query:     3 SLRIIRNGIGIEEHACIDLPGI-KGIWALSIGSPKNLDNTLVLSFVGHTRVLTL 55
             SLRI+R G+ I E A   LPG    +W +        D  +V+SF   T VL++
Sbjct:   432 SLRILRPGLAITEMAVSQLPGQPSAVWTVKKNVSDEFDAYIVVSFTNATLVLSI 485

 Score = 49 (22.3 bits), Expect = 4.8e-08, Sum P(2) = 4.8e-08
 Identities = 19/103 (18%), Positives = 44/103 (42%)

Query:   691 LVVAKNNRIEIHTVTPEG-LRPVKEIFLYGKIAVMKFFRGPTDKKDLLFIITQRYNAMIL 749
             + VA+   +++      G ++ +  + ++G I  +  FR    +KD + + +     +IL
Sbjct:    30 IAVARGKILDLLRPDENGKIQTIHSVEVFGAIRSLAQFRLTGAQKDYIVVGSDSGRIVIL 89

Query:   750 ECRGDIDNLEILTKAHGNVSDRIG-KPSENGIIAIIDPEARVI 791
             E   + +   +  K H     + G +    G    +DP+ R +
Sbjct:    90 EYNKEKN---VFDKVHQETFGKSGCRRIVPGQYVAVDPKGRAV 129


>TAIR|locus:2100646 [details] [associations]
            symbol:SAP130b "spliceosome-associated protein 130 b"
            species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
            binding" evidence=IEA;ISS] [GO:0005634 "nucleus"
            evidence=ISM;IEA;ISS] [GO:0005829 "cytosol" evidence=RCA]
            [GO:0009506 "plasmodesma" evidence=IDA] [GO:0009555 "pollen
            development" evidence=IMP] [GO:0009846 "pollen germination"
            evidence=IMP] [GO:0048481 "ovule development" evidence=IMP]
            InterPro:IPR001680 InterPro:IPR004871 InterPro:IPR015943
            Pfam:PF03178 SMART:SM00320 GO:GO:0009506 GO:GO:0005634
            GO:GO:0009507 EMBL:CP002686 Gene3D:2.130.10.10 GO:GO:0009555
            GO:GO:0003676 EMBL:AL132954 GO:GO:0048481 GO:GO:0009846
            eggNOG:NOG247734 KO:K12830 HOGENOM:HOG000216677 OMA:FDTIPVA
            IPI:IPI00517026 PIR:T47659 RefSeq:NP_567015.1 RefSeq:NP_567016.1
            UniGene:At.28226 UniGene:At.72270 ProteinModelPortal:Q9LD60
            SMR:Q9LD60 STRING:Q9LD60 PaxDb:Q9LD60 PRIDE:Q9LD60
            EnsemblPlants:AT3G55200.1 EnsemblPlants:AT3G55220.1 GeneID:824686
            GeneID:824688 KEGG:ath:AT3G55200 KEGG:ath:AT3G55220
            KEGG:dosa:Os02t0137400-01 TAIR:At3g55200 TAIR:At3g55220
            InParanoid:Q9LD60 PhylomeDB:Q9LD60 ProtClustDB:CLSN2689171
            ArrayExpress:Q9LD60 Genevestigator:Q9LD60 Uniprot:Q9LD60
        Length = 1214

 Score = 266 (98.7 bits), Expect = 7.1e-31, Sum P(2) = 7.1e-31
 Identities = 99/412 (24%), Positives = 184/412 (44%)

Query:   161 MESFTNLAPIIDMVVVDLERQGQGQLVTCSGGFKEGSLRIIRNGIGIEEHACIDLPGI-K 219
             ++   +L P++DM V+++  +   Q+ +  G     SLRI+R G+ I E A   LPG   
Sbjct:   396 IDQVESLMPLMDMKVLNIFEEETPQIFSLCGRGPRSSLRILRPGLAITEMAVSQLPGQPS 455

Query:   220 GIWALSIGSPKNLDNTLVLSFVGHTRVLTLSGAEVEETEMGGFTSDQQTFYCGNVDPRTV 279
              +W +        D  +V+SF   T VL++ G +VEE    GF     +     +   ++
Sbjct:   456 AVWTVKKNVSDEFDAYIVVSFTNATLVLSI-GEQVEEVNDSGFLDTTPSLAVSLIGDDSL 514

Query:   280 LQVTPSAAILISTESKARVSSWEPPNGKSISVVSCNKNQVLCA-TGCDVYYLEVHGS-EI 337
             +QV P+    I  +   R++ W  P  +SI  V  N+ QV+ A +G ++ Y E   + ++
Sbjct:   515 MQVHPNGIRHIREDG--RINEWRTPGKRSIVKVGYNRLQVVIALSGGELIYFEADMTGQL 572

Query:   338 KQLAHRALEYEVACLDISPLSNEETSSEPAKAQLAAVGLWTDISARLLSLPSLEEVCKEP 397
              ++    +  +VACLDI+P+      S     +  AVG + D + R+LSL    + C + 
Sbjct:   573 MEVEKHEMSGDVACLDIAPVPEGRKRS-----RFLAVGSY-DNTVRILSLDP--DDCLQI 624

Query:   398 LGGEII---PRSILMTCFEG------------HCYLLVALGDGSMFYFSLDPASGRLTDK 442
             L  + +   P S+L    +             + +L   L +G +F   +D  +G+L+D 
Sbjct:   625 LSVQSVSSAPESLLFLEVQASIGGDDGADHPANLFLNSGLQNGVLFRTVVDMVTGQLSDS 684

Query:   443 KKVTLGTQPTVLKTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLRQVNHMCSLNAES 502
             +   LG +P  L +      + +   S RP + Y        + ++   +      +++ 
Sbjct:   685 RSRFLGLKPPKLFSISVRGRSAMLCLSSRPWLGYIHRGHFHLTPLSYETLEFAAPFSSDQ 744

Query:   503 YPDSL-ALATDSTFTFGTIDEIQKLHIRTV-PLGEAPRRIAYQESSQTFGVI 552
               + + ++A D+   F  ID + +    TV PL   PR+       +   +I
Sbjct:   745 CAEGVVSVAGDALRIF-MIDRLGETFNETVVPLRYTPRKFVLHPKRKLLVII 795

 Score = 171 (65.3 bits), Expect = 7.1e-31, Sum P(2) = 7.1e-31
 Identities = 55/208 (26%), Positives = 102/208 (49%)

Query:  1009 IIDQNTFEILHAHQLFPGEYALSLISSKFGE-DPNTYFVLGTAV---VHPEENEPKQGRI 1064
             ++D  T       +L   E A S+ +  F + +  T   +GT       P++N    G I
Sbjct:   865 VLDPKTATTTCLLELQDNEAAYSVCTVNFHDKEYGTLLAVGTVKGMQFWPKKNLVA-GFI 923

Query:  1065 IIFHY-DDGKLQQIAEK-EIKGACYSMCEFNGKLLASINSTVRLFEWTNEKELRLECSH- 1121
              I+ + +DGK  ++  K +++G   ++C+F G+LLA I   +RL++   ++ LR +C + 
Sbjct:   924 HIYRFVEDGKSLELLHKTQVEGVPLALCQFQGRLLAGIGPVLRLYDLGKKRLLR-KCENK 982

Query:  1122 -FNNIIALFLKVKGDFILVGDLMRSLTLLQYKTMEGSFEEISRDYNPNWMTSIEILDDEL 1180
              F N I + ++   D I VGD+  S    +Y+  E      + D  P W+T+   +D + 
Sbjct:   983 LFPNTI-ISIQTYRDRIYVGDIQESFHYCKYRRDENQLYIFADDCVPRWLTASHHVDFDT 1041

Query:  1181 FLGAENSYNLFICQ--KDSAATSDEDRT 1206
               GA+   N++  +  +D +   +ED T
Sbjct:  1042 MAGADKFGNVYFVRLPQDLSEEIEEDPT 1069

 Score = 81 (33.6 bits), Expect = 2.4e-11, Sum P(2) = 2.4e-11
 Identities = 20/54 (37%), Positives = 28/54 (51%)

Query:     3 SLRIIRNGIGIEEHACIDLPGI-KGIWALSIGSPKNLDNTLVLSFVGHTRVLTL 55
             SLRI+R G+ I E A   LPG    +W +        D  +V+SF   T VL++
Sbjct:   432 SLRILRPGLAITEMAVSQLPGQPSAVWTVKKNVSDEFDAYIVVSFTNATLVLSI 485

 Score = 49 (22.3 bits), Expect = 4.8e-08, Sum P(2) = 4.8e-08
 Identities = 19/103 (18%), Positives = 44/103 (42%)

Query:   691 LVVAKNNRIEIHTVTPEG-LRPVKEIFLYGKIAVMKFFRGPTDKKDLLFIITQRYNAMIL 749
             + VA+   +++      G ++ +  + ++G I  +  FR    +KD + + +     +IL
Sbjct:    30 IAVARGKILDLLRPDENGKIQTIHSVEVFGAIRSLAQFRLTGAQKDYIVVGSDSGRIVIL 89

Query:   750 ECRGDIDNLEILTKAHGNVSDRIG-KPSENGIIAIIDPEARVI 791
             E   + +   +  K H     + G +    G    +DP+ R +
Sbjct:    90 EYNKEKN---VFDKVHQETFGKSGCRRIVPGQYVAVDPKGRAV 129


>RGD|1311636 [details] [associations]
            symbol:Sf3b3 "splicing factor 3b, subunit 3" species:10116
            "Rattus norvegicus" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005689
            "U12-type spliceosomal complex" evidence=ISO] [GO:0071013
            "catalytic step 2 spliceosome" evidence=ISO] InterPro:IPR004871
            Pfam:PF03178 RGD:1311636 GO:GO:0005634 GO:GO:0003676
            IPI:IPI00563335 PRIDE:F1LSZ9 Ensembl:ENSRNOT00000044193
            UCSC:RGD:1311636 ArrayExpress:F1LSZ9 Uniprot:F1LSZ9
        Length = 902

 Score = 305 (112.4 bits), Expect = 1.1e-30, Sum P(3) = 1.1e-30
 Identities = 105/415 (25%), Positives = 183/415 (44%)

Query:   160 VMESFTNLAPIIDMVVVDLERQGQGQLVTCSGGFKEGSLRIIRNGIGIEEHACIDLPGI- 218
             +++   +L+PI+   + DL  +   QL    G     SLR++R+G+ + E A  +LPG  
Sbjct:   177 LVDELDSLSPILFCQIADLANEDTPQLYVACGRGPRSSLRVLRHGLEVSEMAVSELPGNP 236

Query:   219 KGIWALSIGSPKNLDNTLVLSFVGHTRVLTLSGAEVEETEMGGFTSDQQTFYCGNVDPRT 278
               +W +        D  +++SFV  T VL++ G  VEE    GF     T  C  +    
Sbjct:   237 NAVWTVRRHIEDEFDAYIIVSFVNATLVLSI-GETVEEVTDSGFLGTTPTLSCSLLGDDA 295

Query:   279 VLQVTPSAAILISTESKARVSSWEPPNGKSISVVSCNKNQVLCA-TGCDVYYLEVHGS-E 336
             ++QV P     I  +   RV+ W+ P  K+I   + N+ QV+ A TG ++ Y E+  S +
Sbjct:   296 LVQVYPDGIRHIRADK--RVNEWKTPGKKTIVKCAVNQRQVVIALTGGELVYFEMDPSGQ 353

Query:   337 IKQLAHRA-LEYEVACLDISPLSNEETSSEPAKAQLAAVGLWTDISARLLSL-PS--L-- 390
             + +   R  +  +V C+    L+N     +  +++  AVGL  D + R++SL PS  L  
Sbjct:   354 LNEYTERKEMSADVVCMS---LANVPPGEQ--RSRFLAVGL-VDNTVRIISLDPSDCLQP 407

Query:   391 ----------EEVCKEPLGGEIIPRSILMTCFEGHCYLLVALGDGSMFYFSLDPASGRLT 440
                       E +C   +GG      +      G  YL + L +G +    LDP +G L+
Sbjct:   408 LSMQALPAQPESLCIVEMGGTEKQDELGERGSIGFLYLNIGLQNGVLLRTVLDPVTGDLS 467

Query:   441 DKKKVTLGTQPTVLKTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLRQVNHMCSLNA 500
             D +   LG++P  L   R      V A S R  + YS   +   + ++   +       +
Sbjct:   468 DTRTRYLGSRPVKLFRVRMQGQEAVLAMSSRSWLSYSYQSRFHLTPLSYETLEFASGFAS 527

Query:   501 ESYPDSLALATDSTFTFGTIDEIQKLHIRTV-PLGEAPRRIAYQESSQTFGVITT 554
             E  P+ +   + +T     ++++  +  +   PL   PR+      S    +I T
Sbjct:   528 EQCPEGIVAISTNTLRILALEKLGAVFNQVAFPLQYTPRKFVIHPESNNLIIIET 582

 Score = 122 (48.0 bits), Expect = 1.1e-30, Sum P(3) = 1.1e-30
 Identities = 33/137 (24%), Positives = 65/137 (47%)

Query:  1073 KLQQIAEKEIKGACYSMCEFNGKLLASINSTVRLFEWTNEKELR-LECSHFNNIIALFLK 1131
             KL+ + +  ++    ++  F G++L  +   +R+++   +K LR  E  H  N I+  ++
Sbjct:   621 KLEFLHKTPVEEVPAAIAPFQGRVLIGVGKLLRVYDLGKKKLLRKCENKHIANYIS-GIQ 679

Query:  1132 VKGDFILVGDLMRSLTLLQYKTMEGSFEEISRDYNPNWMTSIEILDDELFLGAENSYNLF 1191
               G  ++V D+  S   ++YK  E      + D  P W+T+  +LD +   GA+   N+ 
Sbjct:   680 TIGHRVIVSDVQESFIWVRYKRNENQLIIFADDTYPRWVTTASLLDYDTVAGADKFGNIC 739

Query:  1192 ICQKDSAATS--DEDRT 1206
             + +         DED T
Sbjct:   740 VVRLPPNTNDEVDEDPT 756

 Score = 83 (34.3 bits), Expect = 1.0e-05, Sum P(3) = 1.0e-05
 Identities = 18/54 (33%), Positives = 31/54 (57%)

Query:     3 SLRIIRNGIGIEEHACIDLPGI-KGIWALSIGSPKNLDNTLVLSFVGHTRVLTL 55
             SLR++R+G+ + E A  +LPG    +W +        D  +++SFV  T VL++
Sbjct:   214 SLRVLRHGLEVSEMAVSELPGNPNAVWTVRRHIEDEFDAYIIVSFVNATLVLSI 267

 Score = 51 (23.0 bits), Expect = 1.1e-30, Sum P(3) = 1.1e-30
 Identities = 21/90 (23%), Positives = 38/90 (42%)

Query:   108 VKEPKVELLGEISIPECLTYLDNGVVFVGSRLGDSQLVKLNR--SPDENGTYVSVM---E 162
             V E +++    + +   +  L  G +FV S  G+  L ++      DE   + S M   E
Sbjct:   102 VTEIRLKYFDTVPVAAAMCVLKTGFLFVASEFGNHYLYQIAHLGDDDEEPEFSSAMPLEE 161

Query:   163 S---FTNLAPIIDMVVVDLERQGQGQLVTC 189
                 F    P+ ++V+VD E      ++ C
Sbjct:   162 GDTFFFQPRPLKNLVLVD-ELDSLSPILFC 190

 Score = 37 (18.1 bits), Expect = 1.0e-05, Sum P(3) = 1.0e-05
 Identities = 11/37 (29%), Positives = 22/37 (59%)

Query:   893 GQESILYHSGKSYVAVAPQIIKSSTIVCYAKVD-ANG 928
             GQE++L  S +S+++ + Q     T + Y  ++ A+G
Sbjct:   488 GQEAVLAMSSRSWLSYSYQSRFHLTPLSYETLEFASG 524


>ASPGD|ASPL0000031473 [details] [associations]
            symbol:AN5452 species:162425 "Emericella nidulans"
            [GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            InterPro:IPR004871 InterPro:IPR015943 Pfam:PF03178 GO:GO:0008380
            Gene3D:2.130.10.10 GO:GO:0006397 GO:GO:0005681 GO:GO:0003676
            GO:GO:0007049 EMBL:BN001305 EMBL:AACD01000094 eggNOG:NOG247734
            KO:K12830 RefSeq:XP_663056.1 STRING:Q5B1X8 GeneID:2871744
            KEGG:ani:AN5452.2 HOGENOM:HOG000216677 OMA:FDTIPVA
            OrthoDB:EOG4FR40R Uniprot:Q5B1X8
        Length = 1209

 Score = 262 (97.3 bits), Expect = 2.4e-30, Sum P(2) = 2.4e-30
 Identities = 102/409 (24%), Positives = 169/409 (41%)

Query:   158 VSVMESFTNLAPIIDMVVVDLERQGQGQLVTCSGGFKEGSLRIIRNGIGIEEHACIDLPG 217
             ++++E+  +L P++D  VV++      Q+ T SG     + R +++G+ + E    +LP 
Sbjct:   411 LNLVEAINSLNPLVDSKVVNISEDDAPQIFTVSGTGARSTFRTLKHGLEVSEIVESELPS 470

Query:   218 I-KGIWALSIGSPKNLDNTLVLSFVGHTRVLTLSGAEVEETEMGGFTSDQQTFYCGNVDP 276
             +   +W   +      D  +VLSF   T VL++ G  VEE    GF S   T     +  
Sbjct:   471 VPSAVWTTKLTRADEFDAYIVLSFANGTLVLSI-GETVEEVTDTGFLSSAPTLAVQQLGE 529

Query:   277 RTVLQVTPSAAILISTESKARVSSWEPPNGKSISVVSCNKNQVLCA--TGCDVYY-LEVH 333
              +++Q+ P     I  +   RV+ W  P  +SI   + N+ QV  A  +G  VY+ L+  
Sbjct:   530 DSLIQIHPRGIRHILADR--RVNEWPAPQHRSIVAAATNERQVAVALSSGEIVYFELDAD 587

Query:   334 GSEIKQLAHRALEYEVACLDISPLSNEETSSEPAKAQLAAVGLWTDISARLLSL-P--SL 390
             GS  +    R +   V CL +      E      ++   AVG   D + R+LSL P  +L
Sbjct:   588 GSLAEYDERRQMSGTVTCLSLG-----EVPEGRVRSSFLAVGC-DDSTVRILSLDPDTTL 641

Query:   391 EEVCKEPLGGEIIPRSILMTCFEGH----CYLLVALGDGSMFYFSLDPASGRLTDKKKVT 446
             E    + L       +I+            YL + L  G     +LD  +G L+D +   
Sbjct:   642 ENKSVQALTAAPSALNIIAMADSSSGGTTLYLHIGLHSGVYLRTALDEVTGELSDTRTRF 701

Query:   447 LGTQPTVLKTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLRQVNHMCSLN--AESYP 504
             LG++   L        T V A S RP + YS      F    L  V      N  +E   
Sbjct:   702 LGSKAVKLFQVSVTGQTAVLALSSRPWLGYSDTQTKGFMLTPLDYVGLEWGWNFSSEQCV 761

Query:   505 DSLALATDSTFTFGTIDEIQKLHIR-TVPLGEAPRRIAYQESSQTFGVI 552
             + +           +I+++    ++ ++PL   PR          F VI
Sbjct:   762 EGMVGIQGQNLRIFSIEKLDNNMLQQSIPLAYTPRHFIKHPEEPLFYVI 810

 Score = 170 (64.9 bits), Expect = 2.4e-30, Sum P(2) = 2.4e-30
 Identities = 57/206 (27%), Positives = 105/206 (50%)

Query:  1009 IIDQ-NTFEILHAHQLFPGEYALSLISSKF-GEDPNTYFVLGTA---VVHPEENEPKQGR 1063
             IID  +   ++ A +L   E A+S+ +  F  +D  T+ V+GTA    V+P  +    G 
Sbjct:   859 IIDPLDAKAVVGAVELEENEAAVSIAAVPFTSQDDETFLVVGTAKDMTVNPPSSAG--GY 916

Query:  1064 IIIFHY-DDGK-LQQIAEKEIKGACYSMCEFNGKLLASINSTVRLFEWTNEKELRLECSH 1121
             I I+ + +DGK L+ I + +++    ++  F G+LLA + S +R+++    K+L  +C  
Sbjct:   917 IHIYRFQEDGKELEFIHKTKVEEPPLALLGFQGRLLAGVGSVLRIYD-LGMKQLLRKCQA 975

Query:  1122 FNNIIALF-LKVKGDFILVGDLMRSLTLLQYKTMEGSFEEISRDYNPNWMTSIEILDDEL 1180
                  A+  L+ +G  I+V D+  S+T + YK  +        D    W T+  ++D E 
Sbjct:   976 AVAPKAIVGLQTQGSRIVVSDVRESVTYVVYKYQDNVLIPFVDDSIARWTTAATMVDYET 1035

Query:  1181 FLGAENSYNLFI--CQKDSAATSDED 1204
               G +   NL++  C K ++  +DE+
Sbjct:  1036 TAGGDKFGNLWLVRCPKKASEEADEE 1061

 Score = 68 (29.0 bits), Expect = 6.7e-10, Sum P(2) = 6.7e-10
 Identities = 25/94 (26%), Positives = 44/94 (46%)

Query:   626 FTSSTDLNLVVAKNNRIEIHTVTP-EG-LRPVKEIFLYGKIAVMKFFRGPTDKKDLLFII 683
             F  + +  +V A  +++ IH   P +G + P+    ++G I  +  FR     KD + I 
Sbjct:    28 FAGTKEQQIVTASGSKLTIHRPDPTQGKVIPLYTQDVFGIIRTLAAFRLAGSNKDYIIIG 87

Query:   684 TQR---TDLNLVVAKN--NRIEIHTVTPEGLRPV 712
             +     T +  V ++N  NRI + T    G+R V
Sbjct:    88 SDSGRITIIEYVPSQNRFNRIHLETFGKSGVRRV 121

 Score = 66 (28.3 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
 Identities = 14/54 (25%), Positives = 27/54 (50%)

Query:     3 SLRIIRNGIGIEEHACIDLPGI-KGIWALSIGSPKNLDNTLVLSFVGHTRVLTL 55
             + R +++G+ + E    +LP +   +W   +      D  +VLSF   T VL++
Sbjct:   450 TFRTLKHGLEVSEIVESELPSVPSAVWTTKLTRADEFDAYIVLSFANGTLVLSI 503

 Score = 41 (19.5 bits), Expect = 4.0e-07, Sum P(2) = 4.0e-07
 Identities = 15/44 (34%), Positives = 20/44 (45%)

Query:    44 LSFVGHTRVLTLSGAEW-GFH--LLRGF-----SSLGSLWNGWS 79
             +S  G T VL LS   W G+     +GF       +G  W GW+
Sbjct:   712 VSVTGQTAVLALSSRPWLGYSDTQTKGFMLTPLDYVGLEW-GWN 754

 Score = 40 (19.1 bits), Expect = 5.9e-06, Sum P(3) = 5.9e-06
 Identities = 12/40 (30%), Positives = 19/40 (47%)

Query:   408 LMTCFEGHCYLLVALGDGSMFYFSLDPAS---GRLTDKKK 444
             +M    G  + L+   DG +F  +LD      G+LT + K
Sbjct:   296 VMHKMRGAFFFLLQTEDGDLFKLTLDMVEDDKGQLTGEVK 335

 Score = 39 (18.8 bits), Expect = 1.1e-16, Sum P(2) = 1.1e-16
 Identities = 9/48 (18%), Positives = 18/48 (37%)

Query:   972 PVVEMSSLSYIKPGSTKQSTANQPADFNMEVEVHNLLIIDQNTFEILH 1019
             P       +++  G+ K  T N P+     + ++     D    E +H
Sbjct:   887 PFTSQDDETFLVVGTAKDMTVNPPSSAGGYIHIYRFQE-DGKELEFIH 933

 Score = 37 (18.1 bits), Expect = 5.9e-06, Sum P(3) = 5.9e-06
 Identities = 11/50 (22%), Positives = 21/50 (42%)

Query:   304 PNGKSISVVSCNKNQVLCATGCDVYYLEVHGSEIKQLAHRALEYEVACLD 353
             P G++  + S  KN+++     +        S ++    + L Y V  LD
Sbjct:   131 PKGRACLIASVEKNKLVYVLNRNSQAELTISSPLEAHKPQTLVYSVVALD 180


>UNIPROTKB|F1P529 [details] [associations]
            symbol:SF3B3 "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0005689 "U12-type spliceosomal complex" evidence=IEA]
            [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
            InterPro:IPR004871 Pfam:PF03178 GO:GO:0003676 GO:GO:0071013
            GeneTree:ENSGT00530000063396 GO:GO:0005689 OMA:FDTIPVA
            EMBL:AADN02051593 EMBL:AADN02051594 IPI:IPI00576925
            Ensembl:ENSGALT00000003987 ArrayExpress:F1P529 Uniprot:F1P529
        Length = 1228

 Score = 305 (112.4 bits), Expect = 1.3e-29, Sum P(3) = 1.3e-29
 Identities = 105/415 (25%), Positives = 183/415 (44%)

Query:   160 VMESFTNLAPIIDMVVVDLERQGQGQLVTCSGGFKEGSLRIIRNGIGIEEHACIDLPGI- 218
             +++   +L+PI+   + DL  +   QL    G     SLR++R+G+ + E A  +LPG  
Sbjct:   397 LVDELDSLSPILCCQIADLANEDTPQLYVACGRGPRSSLRVLRHGLEVSEMAVSELPGNP 456

Query:   219 KGIWALSIGSPKNLDNTLVLSFVGHTRVLTLSGAEVEETEMGGFTSDQQTFYCGNVDPRT 278
               +W +        D  +++SFV  T VL++ G  VEE    GF     T  C  +    
Sbjct:   457 NAVWTVRRHVEDEFDAYIIVSFVNATLVLSI-GETVEEVTDSGFLGTTPTLSCSLLGDDA 515

Query:   279 VLQVTPSAAILISTESKARVSSWEPPNGKSISVVSCNKNQVLCA-TGCDVYYLEVHGS-E 336
             ++QV P     I  +   RV+ W+ P  K+I   + N+ QV+ A TG ++ Y E+  S +
Sbjct:   516 LVQVYPDGIRHIRADK--RVNEWKTPGKKTIVKCAVNQRQVVIALTGGELVYFEMDPSGQ 573

Query:   337 IKQLAHRA-LEYEVACLDISPLSNEETSSEPAKAQLAAVGLWTDISARLLSL-PS--L-- 390
             + +   R  +  +V C+    L+N     +  +++  AVGL  D + R++SL PS  L  
Sbjct:   574 LNEYTERKEMSADVVCMS---LANVPPGEQ--RSRFLAVGL-VDNTVRIISLDPSDCLQP 627

Query:   391 ----------EEVCKEPLGGEIIPRSILMTCFEGHCYLLVALGDGSMFYFSLDPASGRLT 440
                       E +C   +GG      +      G  YL + L +G +    LDP +G L+
Sbjct:   628 LSMQALPAQPESLCIVEMGGTEKQDELGERGSIGFLYLNIGLQNGVLLRTVLDPVTGDLS 687

Query:   441 DKKKVTLGTQPTVLKTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLRQVNHMCSLNA 500
             D +   LG++P  L   R      V A S R  + YS   +   + ++   +       +
Sbjct:   688 DTRTRYLGSRPVKLFRVRMQGQEAVLAMSSRSWLSYSYQSRFHLTPLSYETLEFASGFAS 747

Query:   501 ESYPDSLALATDSTFTFGTIDEIQKLHIRTV-PLGEAPRRIAYQESSQTFGVITT 554
             E  P+ +   + +T     ++++  +  +   PL   PR+      S    +I T
Sbjct:   748 EQCPEGIVAISTNTLRILALEKLGAVFNQVAFPLQYTPRKFVIHPESNNLIIIET 802

 Score = 117 (46.2 bits), Expect = 1.3e-29, Sum P(3) = 1.3e-29
 Identities = 60/269 (22%), Positives = 116/269 (43%)

Query:   959 EPKVELLGEHCKGPVVEMSSLSYIKPGSTKQSTANQPADFNME-VEVHNLLI-IDQNTFE 1016
             E  VE  GE  +    EM++ +++   +  +S    P   N +   V  ++  I  NT +
Sbjct:   821 EEMVEAAGEDERELAAEMAA-AFLNE-NLPESIFGAPKAGNGQWASVIRVMNPIQGNTLD 878

Query:  1017 ILHAHQLFPGEYALSLISSKFGEDPNTYFVL-GTA---VVHPEE--------NEPKQGRI 1064
             ++   QL   E A S+   +F      ++VL G A   +++P           +   G  
Sbjct:   879 LV---QLEQNEAAFSVAVCRFSNTGEEWYVLVGVAKDLILNPRSVAGGFVYTYKLVNGGE 935

Query:  1065 IIFHYDDG--KLQQIAEKEIKGACYSMCEFNGKLLASINSTVRLFEWTNEKELRLECS-- 1120
               +   +G  KL+ + +  ++    ++  F G++L  +   +R+++   +K LR +C   
Sbjct:   936 XTYKLVNGGEKLEFLHKTPVEEVPAAIAPFQGRVLIGVGKLLRVYDLGKKKLLR-KCENK 994

Query:  1121 -HFNNIIALFLKVKGDFILVGDLMRSLTLLQYKTMEGSFEEISRDYNPNWMTSIEILDDE 1179
              H  N I   ++  G  ++V D+  S   ++YK  E      + D  P W+T+  +LD +
Sbjct:   995 KHIANYIC-GIQTIGHRVIVSDVQESFIWVRYKRNENQLIIFADDTYPRWVTTATLLDYD 1053

Query:  1180 LFLGAENSYNLFICQKDSAATS--DEDRT 1206
                GA+   N+ + +         DED T
Sbjct:  1054 TVAGADKFGNICVVRLPPNTNDEVDEDPT 1082

 Score = 83 (34.3 bits), Expect = 9.1e-05, Sum P(3) = 9.1e-05
 Identities = 18/54 (33%), Positives = 31/54 (57%)

Query:     3 SLRIIRNGIGIEEHACIDLPGI-KGIWALSIGSPKNLDNTLVLSFVGHTRVLTL 55
             SLR++R+G+ + E A  +LPG    +W +        D  +++SFV  T VL++
Sbjct:   434 SLRVLRHGLEVSEMAVSELPGNPNAVWTVRRHVEDEFDAYIIVSFVNATLVLSI 487

 Score = 52 (23.4 bits), Expect = 1.3e-29, Sum P(3) = 1.3e-29
 Identities = 21/90 (23%), Positives = 38/90 (42%)

Query:   108 VKEPKVELLGEISIPECLTYLDNGVVFVGSRLGDSQLVKLNR--SPDENGTYVSVM---E 162
             V E +++    + +   +  L  G +FV S  G+  L ++      DE   + S M   E
Sbjct:   322 VTEIRLKYFDTVPVAAAMCVLKTGFLFVASEFGNHYLYQIAHLGDDDEEPEFSSAMPLEE 381

Query:   163 S---FTNLAPIIDMVVVDLERQGQGQLVTC 189
                 F    P+ ++V+VD E      ++ C
Sbjct:   382 GDTFFFQPRPLKNLVLVD-ELDSLSPILCC 410

 Score = 37 (18.1 bits), Expect = 9.1e-05, Sum P(3) = 9.1e-05
 Identities = 11/37 (29%), Positives = 22/37 (59%)

Query:   893 GQESILYHSGKSYVAVAPQIIKSSTIVCYAKVD-ANG 928
             GQE++L  S +S+++ + Q     T + Y  ++ A+G
Sbjct:   708 GQEAVLAMSSRSWLSYSYQSRFHLTPLSYETLEFASG 744


>FB|FBgn0035162 [details] [associations]
            symbol:CG13900 species:7227 "Drosophila melanogaster"
            [GO:0003684 "damaged DNA binding" evidence=ISS] [GO:0030532 "small
            nuclear ribonucleoprotein complex" evidence=ISS] [GO:0000398 "mRNA
            splicing, via spliceosome" evidence=IC;ISS] [GO:0005686 "U2 snRNP"
            evidence=ISS;IDA] [GO:0007052 "mitotic spindle organization"
            evidence=IMP] [GO:0071011 "precatalytic spliceosome" evidence=IDA]
            [GO:0071013 "catalytic step 2 spliceosome" evidence=IDA]
            [GO:0022008 "neurogenesis" evidence=IMP] InterPro:IPR004871
            InterPro:IPR015943 Pfam:PF03178 GO:GO:0007052 GO:GO:0022008
            Gene3D:2.130.10.10 GO:GO:0003676 GO:GO:0071011 GO:GO:0000398
            GO:GO:0071013 GO:GO:0005686 eggNOG:NOG247734 EMBL:BT021338
            ProteinModelPortal:Q5BI86 SMR:Q5BI86 STRING:Q5BI86 PaxDb:Q5BI86
            PRIDE:Q5BI86 FlyBase:FBgn0035162 InParanoid:Q5BI86
            OrthoDB:EOG4B5MM0 ArrayExpress:Q5BI86 Bgee:Q5BI86 Uniprot:Q5BI86
        Length = 1227

 Score = 239 (89.2 bits), Expect = 1.8e-29, Sum P(4) = 1.8e-29
 Identities = 73/262 (27%), Positives = 121/262 (46%)

Query:   160 VMESFTNLAPIIDMVVVDLERQGQGQLVTCSGGFKEGSLRIIRNGIGIEEHACIDLPGI- 218
             +++   + APII   V DL  +   QL    G     +LR++R+G+ + E A  +LPG  
Sbjct:   397 LVDELPSFAPIITSQVADLANEDTPQLYVLCGRGPRSTLRVLRHGLEVSEMAVSELPGNP 456

Query:   219 KGIWALSIGSPKNLDNTLVLSFVGHTRVLTLSGAEVEETEMGGFTSDQQTFYCGNVDPRT 278
               +W +   +    D  +++SFV  T VL++ G  VEE    GF     T  C  +    
Sbjct:   457 NAVWTVKKRADDEFDAYIIVSFVNATLVLSI-GETVEEVTDSGFLGTTPTLCCAALGDDA 515

Query:   279 VLQVTPSAAILISTESKARVSSWEPPNGKSISVVSCNKNQVLCA-TGCDVYYLEVHGS-E 336
             ++QV P     I ++   RV+ W+ P  KSI+  + N+ QV+   +G ++ Y E+  + E
Sbjct:   516 LVQVYPDGIRHIRSDK--RVNEWKAPGKKSITKCAVNQRQVVITLSGRELVYFEMDPTGE 573

Query:   337 IKQLAHRA-LEYEVACLDISPLSNEETSSEPAKAQLAAVGLWTDISARLLSLPSLEEVCK 395
             + +   R+ +  E+ C+ +  +   E  S        AVGL  D + R+LSL      C 
Sbjct:   574 LNEYTERSEMPAEIMCMALGTVPEGEQRS-----WFLAVGL-ADNTVRILSLDPNN--CL 625

Query:   396 EPLGGEIIPRSILMTCFE--GH 415
              P   + +P      C    GH
Sbjct:   626 TPCSMQALPSPAESLCLVEMGH 647

 Score = 140 (54.3 bits), Expect = 1.8e-29, Sum P(4) = 1.8e-29
 Identities = 51/206 (24%), Positives = 90/206 (43%)

Query:  1023 LFPGEYALSLISSKFGEDPNTYFVLGTAVVHPEENEPK--QGRII-IFHYDD--GKLQQI 1077
             L   E  +S+   KF    +  + L   +    +  P+  QG  I I+  D     L+ +
Sbjct:   891 LTQNEAIMSMAMLKFSIAADGRYYLAVGIAKDLQLNPRISQGGCIDIYKIDPTCSSLEFM 950

Query:  1078 AEKEIKGACYSMCEFNGKLLASINSTVRLFEWTNEKELR-LECSHFNNIIALFLKVKGDF 1136
                +I     ++C F G+LLA     +R++++  +K LR  E  H    I + ++  G  
Sbjct:   951 HRTDIDEIPGALCGFQGRLLAGCGRMLRIYDFGKKKMLRKCENKHIPYQI-VNIQAMGHR 1009

Query:  1137 ILVGDLMRSLTLLQYKTMEGSFEEISRDYNPNWMTSIEILDDELFLGAENSYNLFICQKD 1196
             + V D+  S+  ++Y+  E      + D +P W+T+  +LD +    A+   NL I +  
Sbjct:  1010 VYVSDVQESVFFIRYRRAENQLIIFADDTHPRWVTATTLLDYDTIAIADKFGNLSIQRLP 1069

Query:  1197 SAATSDEDRTHLQEVGTVHLVGDGLV 1222
              + T D D       GT  L   GL+
Sbjct:  1070 HSVTDDVDE---DPTGTKSLWDRGLL 1092

 Score = 99 (39.9 bits), Expect = 1.8e-29, Sum P(4) = 1.8e-29
 Identities = 27/127 (21%), Positives = 56/127 (44%)

Query:   413 EGHCYLLVALGDGSMFYFSLDPASGRLTDKKKVTLGTQPTVLKTFRSLSTTNVFACSDRP 472
             +G  YL + L +G +    LDP SG L D +   LG++P  L   +   +  V A S R 
Sbjct:   669 KGTIYLNIGLSNGVLLRTVLDPVSGDLADTRTRYLGSRPVKLFRIKMQGSEAVLAMSSRT 728

Query:   473 TVIYSSNHKLVFSNVNLRQVNHMCSLNAESYPDSLALATDSTFTFGTIDEIQKLHIRTV- 531
              + Y   ++   + ++   + +    ++E   + +   + +T     ++++  +  +   
Sbjct:   729 WLSYYHQNRFHLTPLSYETLEYASGFSSEQCSEGIVAISTNTLRILALEKLGAVFNQVAF 788

Query:   532 PLGEAPR 538
             PL   PR
Sbjct:   789 PLQYTPR 795

 Score = 84 (34.6 bits), Expect = 1.8e-13, Sum P(3) = 1.8e-13
 Identities = 17/54 (31%), Positives = 32/54 (59%)

Query:     3 SLRIIRNGIGIEEHACIDLPGI-KGIWALSIGSPKNLDNTLVLSFVGHTRVLTL 55
             +LR++R+G+ + E A  +LPG    +W +   +    D  +++SFV  T VL++
Sbjct:   434 TLRVLRHGLEVSEMAVSELPGNPNAVWTVKKRADDEFDAYIIVSFVNATLVLSI 487

 Score = 44 (20.5 bits), Expect = 1.8e-29, Sum P(4) = 1.8e-29
 Identities = 11/47 (23%), Positives = 21/47 (44%)

Query:   108 VKEPKVELLGEISIPECLTYLDNGVVFVGSRLGDSQLVKLNRSPDEN 154
             V E K++    +     +  L  G +FV S  G+  L ++    D++
Sbjct:   322 VSEIKLKYFDTVPPATAMCVLKTGFLFVASEFGNHYLYQIAHLGDDD 368

 Score = 43 (20.2 bits), Expect = 8.0e-08, Sum P(3) = 8.0e-08
 Identities = 20/76 (26%), Positives = 31/76 (40%)

Query:   417 YLLVALGDGSMFYFSLDPASGRLTDKKKVTLGTQPTVL---KTFRSLSTTNVFACSDRPT 473
             +L V L D ++   SLDP +  LT      L +    L   +   + STT      D P 
Sbjct:   604 FLAVGLADNTVRILSLDP-NNCLTPCSMQALPSPAESLCLVEMGHTESTTQGGLDDDAPA 662

Query:   474 VIYSSNHKLVFSNVNL 489
                 +N   ++ N+ L
Sbjct:   663 QRSGNNKGTIYLNIGL 678

 Score = 43 (20.2 bits), Expect = 8.0e-08, Sum P(3) = 8.0e-08
 Identities = 53/237 (22%), Positives = 100/237 (42%)

Query:   255 EETEMGGFTSDQQTFYCGNVDPRTVLQVTPSAAILISTESKARVSSWEPPNGKSISVVSC 314
             E T  GG   D      GN      L +  S  +L+ T         +P +G     ++ 
Sbjct:   649 ESTTQGGLDDDAPAQRSGNNKGTIYLNIGLSNGVLLRTVL-------DPVSGD----LAD 697

Query:   315 NKNQVLCATGCDVYYLEVHGSE-IKQLAHRA-LEY-EVACLDISPLSNE--ETSSEPAKA 369
              + + L +    ++ +++ GSE +  ++ R  L Y       ++PLS E  E +S  +  
Sbjct:   698 TRTRYLGSRPVKLFRIKMQGSEAVLAMSSRTWLSYYHQNRFHLTPLSYETLEYASGFSSE 757

Query:   370 QLAA--VGLWTDISARLLSLPSLEEVCKE---PLGGEIIPRSILMTCFEGHCYLLVALGD 424
             Q +   V + T+ + R+L+L  L  V  +   PL  +  PR+ ++    G   +L+A  D
Sbjct:   758 QCSEGIVAISTN-TLRILALEKLGAVFNQVAFPL--QYTPRTFVIHPDTGR--MLIAETD 812

Query:   425 GSMFYFSLDPASGR---LTDKKKVTLGTQPTVLKTFRSLSTTNVFACSDRPTVIYSS 478
              + +  + D  S R   + ++ +   G +   L   R ++  N F     P  ++SS
Sbjct:   813 HNAY--TEDTKSARKEQMAEEMRSAAGDEERELA--REMA--NAFINEVLPEDVFSS 863

 Score = 40 (19.1 bits), Expect = 1.6e-07, Sum P(3) = 1.6e-07
 Identities = 8/31 (25%), Positives = 15/31 (48%)

Query:   411 CFEGHCYLLVALGDGSMFYFSLDPASGRLTD 441
             C      +++ L    + YF +DP +G L +
Sbjct:   547 CAVNQRQVVITLSGRELVYFEMDP-TGELNE 576


>POMBASE|SPAPJ698.03c [details] [associations]
            symbol:prp12 "U2 snRNP-associated protein Sap130
            (predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000245
            "spliceosomal complex assembly" evidence=ISS] [GO:0005681
            "spliceosomal complex" evidence=IEA] [GO:0005686 "U2 snRNP"
            evidence=ISS] [GO:0030620 "U2 snRNA binding" evidence=ISS]
            [GO:0045292 "mRNA cis splicing, via spliceosome" evidence=ISS]
            InterPro:IPR017986 InterPro:IPR004871 InterPro:IPR015943
            Pfam:PF03178 PomBase:SPAPJ698.03c EMBL:CU329670
            GenomeReviews:CU329670_GR Gene3D:2.130.10.10 SUPFAM:SSF50978
            GO:GO:0005681 GO:GO:0007049 GO:GO:0000245 GO:GO:0005686
            GO:GO:0045292 eggNOG:NOG247734 GO:GO:0030620 KO:K12830
            HOGENOM:HOG000216677 OMA:FDTIPVA OrthoDB:EOG4FR40R EMBL:AB034966
            RefSeq:NP_594414.1 IntAct:Q9UTT2 STRING:Q9UTT2
            EnsemblFungi:SPAPJ698.03c.1 GeneID:2543278 KEGG:spo:SPAPJ698.03c
            NextBio:20804299 Uniprot:Q9UTT2
        Length = 1206

 Score = 265 (98.3 bits), Expect = 2.2e-29, Sum P(3) = 2.2e-29
 Identities = 101/397 (25%), Positives = 165/397 (41%)

Query:   158 VSVMESFTNLAPIIDMVVVDLERQGQG-QLVTCSGGFKEGSLRIIRNGIGIEEHACIDLP 216
             +S++E   +L  + D +++     G+  QL T  G     SLR +R G+   E    +LP
Sbjct:   419 LSLVEEIPSLYSLTDTLLMKAPSSGEANQLYTVCGRGSNSSLRQLRRGLETTEIVASELP 478

Query:   217 GIK-GIWALSIGSPKNLDNTLVLSFVGHTRVLTLSGAEVEETEMGGFTSDQQTFYCGNVD 275
             G    IW L +      D+ ++LSF   T VL++ G  VEE    GF S   T     + 
Sbjct:   479 GAPIAIWTLKLNQTDVYDSYIILSFTNGTLVLSI-GETVEEISDSGFLSSVSTLNARQMG 537

Query:   276 PRTVLQVTPSAAILISTESKARVSSWEPPNGKSISVVSCNKNQVLCA-TGCDVYYLE--- 331
               +++Q+ P     I   +  + S W+ P    +   + N  Q++ A +  ++ Y E   
Sbjct:   538 RDSLVQIHPKGIRYI--RANKQTSEWKLPQDVYVVQSAINDMQIVVALSNGELVYFEMSD 595

Query:   332 -VHGSEIKQLAHR-ALEYEVACLDISPLSNEETSSEPAKAQLAAVGLWTDISARLLSLP- 388
              V G ++ +   R  L   V  L + P+  +E S       LA      D + R+LSL  
Sbjct:   596 DVEGGQLNEYQERKTLTANVTSLALGPV--QEGSRRSNFMCLAC----DDATVRVLSLDL 649

Query:   389 --SLEEVCKEPLGGEIIPRSILMTCFEG--HCYLLVALGDGSMFYFSLDPASGRLTDKKK 444
               +LE +  + L        I+     G    YL + L +G      +D  SG+L D + 
Sbjct:   650 YTTLENLSVQALSSPANSLCIIPMNVNGVSTLYLHIGLMNGVYLRTVIDVTSGQLLDTRT 709

Query:   445 VTLGTQPTVLKTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLRQVNHMCSLNAESYP 504
               LG +   +      +   V A S R  + YS    L  S +    ++H  S  +E  P
Sbjct:   710 RFLGPRAVKIYPITMKNQNTVLAVSSRTFLAYSYQQNLQLSPIAYSAIDHASSFASEQCP 769

Query:   505 DSLALATDSTFTFGTIDEIQK-LHIRTVPLGEAPRRI 540
             + +     +T    T+D +Q  L     PL   PR+I
Sbjct:   770 EGIVAIQKNTLKIFTVDSLQDDLKSDIYPLICTPRKI 806

 Score = 156 (60.0 bits), Expect = 2.2e-29, Sum P(3) = 2.2e-29
 Identities = 50/204 (24%), Positives = 94/204 (46%)

Query:  1009 IIDQNTFEILHAHQLFPGEYALSLISSKFGEDPNTYFVLGTAV-VHPEENEPKQG--RII 1065
             + D  + +I+H   L   E A S+ ++ F      + V G+A  +  E      G  R+ 
Sbjct:   859 VFDMISKKIIHESPLGDNEAAFSMTAAFFKNRDEFFLVAGSATNMDLECRTCSHGNFRVY 918

Query:  1066 IFHYDDGKLQQIAEKEIKGACYSMCEFNGKLLASINSTVRLFEWTNEKELRL-ECSHFNN 1124
              FH +  KL+ I+  EI G   ++  F G++LA +   +R+++  N+K LR  E S    
Sbjct:   919 RFHDEGKKLELISHTEIDGIPMALTPFQGRMLAGVGRFLRIYDLGNKKMLRKGELSAVPL 978

Query:  1125 IIALFLKVKGDFILVGDLMRSLTLLQYKTMEGSFEEISRDYNPNWMTSIEILDDELFLGA 1184
              I   + V+   I+V D   S+  + YK  +      + D    W T+  ++D +   G 
Sbjct:   979 FIT-HITVQASRIVVADSQYSVRFVVYKPEDNHLLTFADDTIHRWTTTNVLVDYDTLAGG 1037

Query:  1185 ENSYNLFI--CQKDSAATSDEDRT 1206
             +   N+++  C +  +  +DE+ +
Sbjct:  1038 DKFGNIWLLRCPEHVSKLADEENS 1061

 Score = 80 (33.2 bits), Expect = 1.2e-09, Sum P(2) = 1.2e-09
 Identities = 19/54 (35%), Positives = 28/54 (51%)

Query:     3 SLRIIRNGIGIEEHACIDLPGIK-GIWALSIGSPKNLDNTLVLSFVGHTRVLTL 55
             SLR +R G+   E    +LPG    IW L +      D+ ++LSF   T VL++
Sbjct:   459 SLRQLRRGLETTEIVASELPGAPIAIWTLKLNQTDVYDSYIILSFTNGTLVLSI 512

 Score = 52 (23.4 bits), Expect = 2.2e-29, Sum P(3) = 2.2e-29
 Identities = 14/61 (22%), Positives = 30/61 (49%)

Query:   103 DGTFSVKEPKVELLGEISIPECLTYLDNGVVFVGSRLGDSQLVKL-NRSPDENGTYVSVM 161
             DG  +V E +++    + +   L  L  G +FV +  G+ QL +  N   D++   ++ +
Sbjct:   336 DGQGNVVELRLKYFDTVPLAVQLNILKTGFLFVATEFGNHQLYQFENLGIDDDELEITSL 395

Query:   162 E 162
             +
Sbjct:   396 D 396

 Score = 44 (20.5 bits), Expect = 5.8e-06, Sum P(2) = 5.8e-06
 Identities = 16/68 (23%), Positives = 30/68 (44%)

Query:   964 LLGEHCKGPVVEMSSL---SYIKPGSTKQSTANQPADFNMEVEVHNLLIIDQNTFEILHA 1020
             +L ++C G +  ++ L    + +      S + +       VE + L+ I Q TF     
Sbjct:    59 ILNQNCFGIIRNVAPLRLTGFKRDYLVVTSDSGRITILEYNVEKNKLVPIYQETFGKSGI 118

Query:  1021 HQLFPGEY 1028
              ++ PGEY
Sbjct:   119 RRVVPGEY 126

 Score = 43 (20.2 bits), Expect = 1.9e-28, Sum P(3) = 1.9e-28
 Identities = 11/40 (27%), Positives = 17/40 (42%)

Query:   131 GVVFVGSRLGDSQLVKLNRSPDENGTYVSVMESFTNLAPI 170
             G  F   + GD  L+KL    D  G  V +   + +  P+
Sbjct:   315 GSFFYLLQTGDGDLLKLTIEHDGQGNVVELRLKYFDTVPL 354

 Score = 39 (18.8 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
 Identities = 16/59 (27%), Positives = 22/59 (37%)

Query:   589 IKPGSTKQSTANQPADFNMEVEVHNLLIIDQNTFERNFTSSTDLNLVVAKNNRIEIHTV 647
             + PG      A   A     VE + L+ +     E N T S+ L     K N I  H +
Sbjct:   121 VVPGEYLAIDAKGRAAMIASVEKNKLVYVLNRDSEANLTISSPLE--AHKANNICFHLI 177


>WB|WBGene00019323 [details] [associations]
            symbol:teg-4 species:6239 "Caenorhabditis elegans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0009792 "embryo development ending in
            birth or egg hatching" evidence=IMP] [GO:0040035 "hermaphrodite
            genitalia development" evidence=IMP] [GO:0009790 "embryo
            development" evidence=IMP] [GO:0001703 "gastrulation with mouth
            forming first" evidence=IMP] [GO:0000003 "reproduction"
            evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
            "nematode larval development" evidence=IMP] [GO:0002009
            "morphogenesis of an epithelium" evidence=IMP] [GO:0042127
            "regulation of cell proliferation" evidence=IMP] [GO:0040020
            "regulation of meiosis" evidence=IMP] [GO:0008406 "gonad
            development" evidence=IMP] [GO:0016477 "cell migration"
            evidence=IMP] [GO:0007281 "germ cell development" evidence=IMP]
            InterPro:IPR017986 InterPro:IPR004871 InterPro:IPR015943
            Pfam:PF03178 GO:GO:0005634 GO:GO:0009792 GO:GO:0002009
            GO:GO:0040007 GO:GO:0016477 GO:GO:0008406 GO:GO:0002119
            Gene3D:2.130.10.10 SUPFAM:SSF50978 GO:GO:0003676 GO:GO:0042127
            GO:GO:0040035 GO:GO:0007281 GO:GO:0040020 eggNOG:NOG247734
            GeneTree:ENSGT00530000063396 GO:GO:0001703 KO:K12830
            HOGENOM:HOG000216677 OMA:FDTIPVA EMBL:FO081029 PIR:T32916
            RefSeq:NP_491953.1 ProteinModelPortal:O44985 STRING:O44985
            PaxDb:O44985 EnsemblMetazoa:K02F2.3 GeneID:172406
            KEGG:cel:CELE_K02F2.3 UCSC:K02F2.3 CTD:172406 WormBase:K02F2.3
            InParanoid:O44985 NextBio:875387 Uniprot:O44985
        Length = 1220

 Score = 306 (112.8 bits), Expect = 1.4e-27, Sum P(3) = 1.4e-27
 Identities = 103/419 (24%), Positives = 190/419 (45%)

Query:   151 PDENGTYVSVMESFTNLAPIIDMVVVDLERQGQGQLVTCSGGFKEGSLRIIRNGIGIEEH 210
             P E  + + + +S  +L+P+ D V+ D+ R+   Q+ +  G     SL+++RNG+ I E 
Sbjct:   389 PHELKSLIPI-DSMDSLSPLTDAVIGDIAREDAAQIYSLVGRGARSSLKVLRNGLEISEM 447

Query:   211 ACIDLPGI-KGIWALSIGSPKNLDNTLVLSFVGHTRVLTLSGAEVEETEMGGFTSDQQTF 269
             A  DLPG    +W +        D+ +V+SFV  T  LT+ G  VEE    GF     T 
Sbjct:   448 AVSDLPGNPNAVWTVKKNIEDQYDSYIVVSFVNATLALTI-GDTVEEASDSGFLPTTPTI 506

Query:   270 YCGNVDPRTVLQVTPSAAILISTESKARVSSWEPPNGKSISVVSCNKNQVLCA-TGCDVY 328
              C  +   +++Q+       I  +   R++ W+ P  + I   + N+ QV  A TG ++ 
Sbjct:   507 GCAMIGDDSLVQIYSEGIRHIRADK--RINEWKAPPRRQIVKCAVNRRQVAVALTGGELV 564

Query:   329 YLEVH-GSEIKQLAHRAL-EYEVACLDISPLSNEETSSEPAKAQLAAVGLWTDISARLLS 386
             Y E+     + +   R L   ++AC+  S +S  E +S     +  A+G   D + R++S
Sbjct:   565 YFELDLNGTLNEFTERKLFNADIACMTFSEISEGELNS-----RFLALGT-VDNAVRIIS 618

Query:   387 LPSLEEVCKEPLGGEIIP---RSILM--TCFE-GH----CYLLVALGDGSMFYFSLDPAS 436
             L   + +   PL  + +P    SIL+  T  E G      +L + L +G +F  ++D  +
Sbjct:   619 LDPNDMLM--PLSTQSLPCPPESILLIDTPNEDGKGVAAVHLNIGLQNGCLFRNTVDNVT 676

Query:   437 GRLTDKKKVTLGTQPTVLKTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLRQVNHMC 496
             G + D +   LGT+P  L   +    + +   S R  ++Y    +   + ++   + +  
Sbjct:   677 GAIMDTRTRYLGTRPVKLFKVQCQGRSAILCTSSRSWLLYHFQRRFHLTPLSYANLEYAA 736

Query:   497 SLNAESYPDSLALATDSTFTFGTIDEIQ-KLHIRTVPLGEAPRRIAYQESSQTFGVITT 554
             S  +    + +   + ST      +++    ++++      PRR+A   S     VI T
Sbjct:   737 SFCSNQCSEGIVAISASTLRIIAAEKLGVAFNVQSFEHKMTPRRVAVHPSMPCLIVIET 795

 Score = 102 (41.0 bits), Expect = 1.4e-27, Sum P(3) = 1.4e-27
 Identities = 45/208 (21%), Positives = 87/208 (41%)

Query:  1009 IIDQNTFEILHAHQLFPGEYALSLISSKFGEDPNTYFVL-GTAV-----VH---PEENE- 1058
             +I   + + L   +L   E A  +   +F + PN   VL G  V     VH   P +   
Sbjct:   862 LISATSGDKLSYFELPQDENAKCVALVQFSKHPNEAMVLVGCGVNEVLNVHDIDPNDTSI 921

Query:  1059 -PKQGRIIIFHYD-DG-KLQQIAEKEIKGACYSMCEFNGKLLASINSTVRLFEWTNEKEL 1115
              P +G +  FH   +G +   +   E      ++ +F G  L      +R+++   +K+L
Sbjct:   922 RPTRGCVYTFHLSANGDRFDFLHRTETPLPVGAIHDFRGMALVGFGRFLRMYD-IGQKKL 980

Query:  1116 RLECSHFNNIIALF-LKVKGDFILVGDLMRSLTLLQYKTMEGSFEEISRDYNPNWMTSIE 1174
               +C + N  +++  ++  G  I+V D   S+  L+Y+  +      + D  P ++T + 
Sbjct:   981 LAKCENKNFPVSIVNIQSTGQRIIVSDSQESVHFLRYRKGDNQLVVFADDTTPRYVTCVC 1040

Query:  1175 ILDDELFLGAENSYNLFICQKDSAATSD 1202
             +LD      A+   NL + +       D
Sbjct:  1041 VLDYHTVAVADKFGNLAVVRLPERVNED 1068

 Score = 96 (38.9 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
 Identities = 21/54 (38%), Positives = 31/54 (57%)

Query:     3 SLRIIRNGIGIEEHACIDLPGI-KGIWALSIGSPKNLDNTLVLSFVGHTRVLTL 55
             SL+++RNG+ I E A  DLPG    +W +        D+ +V+SFV  T  LT+
Sbjct:   434 SLKVLRNGLEISEMAVSDLPGNPNAVWTVKKNIEDQYDSYIVVSFVNATLALTI 487

 Score = 46 (21.3 bits), Expect = 1.4e-27, Sum P(3) = 1.4e-27
 Identities = 10/40 (25%), Positives = 20/40 (50%)

Query:   108 VKEPKVELLGEISIPECLTYLDNGVVFVGSRLGDSQLVKL 147
             V E K++    +     L  L +G +FV +  G+ +L ++
Sbjct:   323 VSEMKLKYFDTVPPANALCILKSGFLFVAAEFGNHELYQI 362


>GENEDB_PFALCIPARUM|PFL1680w [details] [associations]
            symbol:PFL1680w "splicing factor 3b, subunit 3,
            130kD, putative" species:5833 "Plasmodium falciparum" [GO:0005681
            "spliceosomal complex" evidence=ISS] [GO:0008380 "RNA splicing"
            evidence=ISS] InterPro:IPR017986 InterPro:IPR004871
            InterPro:IPR015943 Pfam:PF03178 GO:GO:0008380 Gene3D:2.130.10.10
            SUPFAM:SSF50978 GO:GO:0005681 GO:GO:0003676 EMBL:AE014188 KO:K12830
            HOGENOM:HOG000216677 RefSeq:XP_001350742.1
            ProteinModelPortal:Q8I574 PRIDE:Q8I574
            EnsemblProtists:PFL1680w:mRNA GeneID:811388 KEGG:pfa:PFL1680w
            EuPathDB:PlasmoDB:PF3D7_1234800 OMA:PVTSSMC ProtClustDB:CLSZ2733835
            Uniprot:Q8I574
        Length = 1329

 Score = 254 (94.5 bits), Expect = 1.6e-27, Sum P(4) = 1.6e-27
 Identities = 99/420 (23%), Positives = 188/420 (44%)

Query:   139 LGDSQLVKLNRSPDENGTYVSVMESFTNLAPIIDMVVVDLERQGQGQLVTCSGGFKEGSL 198
             LG + ++    +  +N   + +++   +L+PI+DM ++D +     Q+ T  G     SL
Sbjct:   411 LGKNAIIAFKTNKLKN---LYLVDQIYSLSPILDMKIIDAKNTHTPQIYTLCGRGPRSSL 467

Query:   199 RIIRNGIGIEEHACIDLPGI-KGIWALSIGSPKNLDNTLVLSFVGHTRVLTLSGAEVEET 257
             RI+++G+ IEE A  +LPG  K IW +   +    D  +V+SF G+T +L + G  VEE 
Sbjct:   468 RILQHGLSIEELADNELPGKPKYIWTIKKDNLSEYDGYIVVSFEGNTLILEI-GESVEEV 526

Query:   258 EMGGFTSDQQTFYCGNVDPRTVLQVTPSAAILISTESKARVSSWEPPNGKSISVVSCNKN 317
                   ++  T +   +   + +QV  +    I+   K  V  W  P  K I   S N +
Sbjct:   527 SDTLLLNNVTTLHINILYDNSFIQVYDTGIRHIN--GKV-VQEWVAPKNKQIKAASSNSS 583

Query:   318 QVLCA-TGCDVYYLEVHGSE-IKQLAHRALEYEVACLDISPLSNEETSSEPAKAQLAAVG 375
             Q++ + +G ++ Y E+  S  + ++  + L  EV CL I     ++      +A   AVG
Sbjct:   584 QIVISLSGGELIYFEIDESHTLVEIFRKNLNVEVLCLSI-----QQIPPNRVRANFLAVG 638

Query:   376 LWTDISARLLSLPS---LEEVCKEPLGGEIIPRSILM--------TCFEGHC-YLLVALG 423
                ++  RLLS+      +++    L     P+ I +        T  E +  +L + L 
Sbjct:   639 CLDNV-VRLLSIEKDKYFKQLSTHLLPNNSSPQDICISEMNDNGNTMKERNIIFLNIGLN 697

Query:   424 DGSMFYFSLDPASGRLTDKKKVTLGTQPTVLKTFRSLSTTNVFACSDRPTVIYSSNHKLV 483
              G +    +DP +G L++     LG +   +          +    ++  + Y    K +
Sbjct:   698 TGVLLRSIIDPVAGTLSNHYSKYLGAKSIKICPVNVNKNPALLVLCEKTYLCYMHQGKFL 757

Query:   484 FSNVNLRQVNHMCSLNAESYPDS-LALATDST--FTFGTIDEIQKLHIRTVPLGEAPRRI 540
             +S +N   + +  S  +    D  +A++++S   F F  + E+   +I  + L   PR+I
Sbjct:   758 YSPLNYDMLEYASSFYSPQCSDGYVAISSNSLRIFRFYRLGEVFSQNI--LHLTFTPRKI 815

 Score = 166 (63.5 bits), Expect = 1.6e-27, Sum P(4) = 1.6e-27
 Identities = 53/197 (26%), Positives = 92/197 (46%)

Query:  1009 IIDQNTFEILHAHQLFPGEYALSLISSKFGEDPNTYFVLGTAVVHPEENEPKQGRIIIFH 1068
             II+    +IL    L   E ALS+ + +  E  +   V  T  +  +        + ++ 
Sbjct:   985 IINPVNLQILDKISLDMEEAALSVCACEL-EALHCLIVGTTTNLSLKTKSLTSASLRVYT 1043

Query:  1069 YD-DGKLQQIAEKEIKGACYSMCEFNGKLLASINSTVRLFEWTNEKELRLECSHFNNIIA 1127
             YD   KL  +    I+   Y  C +NGKL+ASI + +R++    +K+L  +C + +   A
Sbjct:  1044 YDIQYKLNLLHITPIEEQPYCFCSYNGKLIASIGNKLRIYA-LGKKKLLKKCEYKDIPEA 1102

Query:  1128 LF-LKVKGDFILVGDLMRSLTLLQYKTMEGSFEEISRDYNPNWMTSIEILDDELFLGAEN 1186
             +  +K+ G+ I   D+  S+ +  Y   + +   IS D  P W+T  EILD    + A+ 
Sbjct:  1103 IVSIKISGNRIFACDIRESVLIFFYDPNQNTLRLISDDIIPRWITCSEILDHHTIMAADK 1162

Query:  1187 SYNLFICQKDSAATSDE 1203
               ++FI +    A  DE
Sbjct:  1163 FDSVFILRVPEEAKQDE 1179

 Score = 94 (38.1 bits), Expect = 6.6e-11, Sum P(3) = 6.6e-11
 Identities = 22/54 (40%), Positives = 34/54 (62%)

Query:     3 SLRIIRNGIGIEEHACIDLPGI-KGIWALSIGSPKNLDNTLVLSFVGHTRVLTL 55
             SLRI+++G+ IEE A  +LPG  K IW +   +    D  +V+SF G+T +L +
Sbjct:   466 SLRILQHGLSIEELADNELPGKPKYIWTIKKDNLSEYDGYIVVSFEGNTLILEI 519

 Score = 46 (21.3 bits), Expect = 1.6e-27, Sum P(4) = 1.6e-27
 Identities = 11/51 (21%), Positives = 24/51 (47%)

Query:   108 VKEPKVELLGEISIPECLTYLDNGVVFVGSRLGDSQLVKLNRSPDENGTYV 158
             VKE   +    + I   ++ L +G +FV +  G+    + +   D+N  ++
Sbjct:   354 VKEIVCKYFDTVPIGNSISVLKSGSLFVAAEFGNHYFYQFSGIGDDNKQFM 404

 Score = 38 (18.4 bits), Expect = 1.6e-27, Sum P(4) = 1.6e-27
 Identities = 6/15 (40%), Positives = 11/15 (73%)

Query:   753 GDIDNLEILTKAHGN 767
             GD+DN+++   A+ N
Sbjct:   889 GDVDNIDVNDSANMN 903


>UNIPROTKB|Q8I574 [details] [associations]
            symbol:PFL1680w "Splicing factor 3b, subunit 3, 130kD,
            putative" species:36329 "Plasmodium falciparum 3D7" [GO:0005681
            "spliceosomal complex" evidence=ISS] [GO:0008380 "RNA splicing"
            evidence=ISS] InterPro:IPR017986 InterPro:IPR004871
            InterPro:IPR015943 Pfam:PF03178 GO:GO:0008380 Gene3D:2.130.10.10
            SUPFAM:SSF50978 GO:GO:0005681 GO:GO:0003676 EMBL:AE014188 KO:K12830
            HOGENOM:HOG000216677 RefSeq:XP_001350742.1
            ProteinModelPortal:Q8I574 PRIDE:Q8I574
            EnsemblProtists:PFL1680w:mRNA GeneID:811388 KEGG:pfa:PFL1680w
            EuPathDB:PlasmoDB:PF3D7_1234800 OMA:PVTSSMC ProtClustDB:CLSZ2733835
            Uniprot:Q8I574
        Length = 1329

 Score = 254 (94.5 bits), Expect = 1.6e-27, Sum P(4) = 1.6e-27
 Identities = 99/420 (23%), Positives = 188/420 (44%)

Query:   139 LGDSQLVKLNRSPDENGTYVSVMESFTNLAPIIDMVVVDLERQGQGQLVTCSGGFKEGSL 198
             LG + ++    +  +N   + +++   +L+PI+DM ++D +     Q+ T  G     SL
Sbjct:   411 LGKNAIIAFKTNKLKN---LYLVDQIYSLSPILDMKIIDAKNTHTPQIYTLCGRGPRSSL 467

Query:   199 RIIRNGIGIEEHACIDLPGI-KGIWALSIGSPKNLDNTLVLSFVGHTRVLTLSGAEVEET 257
             RI+++G+ IEE A  +LPG  K IW +   +    D  +V+SF G+T +L + G  VEE 
Sbjct:   468 RILQHGLSIEELADNELPGKPKYIWTIKKDNLSEYDGYIVVSFEGNTLILEI-GESVEEV 526

Query:   258 EMGGFTSDQQTFYCGNVDPRTVLQVTPSAAILISTESKARVSSWEPPNGKSISVVSCNKN 317
                   ++  T +   +   + +QV  +    I+   K  V  W  P  K I   S N +
Sbjct:   527 SDTLLLNNVTTLHINILYDNSFIQVYDTGIRHIN--GKV-VQEWVAPKNKQIKAASSNSS 583

Query:   318 QVLCA-TGCDVYYLEVHGSE-IKQLAHRALEYEVACLDISPLSNEETSSEPAKAQLAAVG 375
             Q++ + +G ++ Y E+  S  + ++  + L  EV CL I     ++      +A   AVG
Sbjct:   584 QIVISLSGGELIYFEIDESHTLVEIFRKNLNVEVLCLSI-----QQIPPNRVRANFLAVG 638

Query:   376 LWTDISARLLSLPS---LEEVCKEPLGGEIIPRSILM--------TCFEGHC-YLLVALG 423
                ++  RLLS+      +++    L     P+ I +        T  E +  +L + L 
Sbjct:   639 CLDNV-VRLLSIEKDKYFKQLSTHLLPNNSSPQDICISEMNDNGNTMKERNIIFLNIGLN 697

Query:   424 DGSMFYFSLDPASGRLTDKKKVTLGTQPTVLKTFRSLSTTNVFACSDRPTVIYSSNHKLV 483
              G +    +DP +G L++     LG +   +          +    ++  + Y    K +
Sbjct:   698 TGVLLRSIIDPVAGTLSNHYSKYLGAKSIKICPVNVNKNPALLVLCEKTYLCYMHQGKFL 757

Query:   484 FSNVNLRQVNHMCSLNAESYPDS-LALATDST--FTFGTIDEIQKLHIRTVPLGEAPRRI 540
             +S +N   + +  S  +    D  +A++++S   F F  + E+   +I  + L   PR+I
Sbjct:   758 YSPLNYDMLEYASSFYSPQCSDGYVAISSNSLRIFRFYRLGEVFSQNI--LHLTFTPRKI 815

 Score = 166 (63.5 bits), Expect = 1.6e-27, Sum P(4) = 1.6e-27
 Identities = 53/197 (26%), Positives = 92/197 (46%)

Query:  1009 IIDQNTFEILHAHQLFPGEYALSLISSKFGEDPNTYFVLGTAVVHPEENEPKQGRIIIFH 1068
             II+    +IL    L   E ALS+ + +  E  +   V  T  +  +        + ++ 
Sbjct:   985 IINPVNLQILDKISLDMEEAALSVCACEL-EALHCLIVGTTTNLSLKTKSLTSASLRVYT 1043

Query:  1069 YD-DGKLQQIAEKEIKGACYSMCEFNGKLLASINSTVRLFEWTNEKELRLECSHFNNIIA 1127
             YD   KL  +    I+   Y  C +NGKL+ASI + +R++    +K+L  +C + +   A
Sbjct:  1044 YDIQYKLNLLHITPIEEQPYCFCSYNGKLIASIGNKLRIYA-LGKKKLLKKCEYKDIPEA 1102

Query:  1128 LF-LKVKGDFILVGDLMRSLTLLQYKTMEGSFEEISRDYNPNWMTSIEILDDELFLGAEN 1186
             +  +K+ G+ I   D+  S+ +  Y   + +   IS D  P W+T  EILD    + A+ 
Sbjct:  1103 IVSIKISGNRIFACDIRESVLIFFYDPNQNTLRLISDDIIPRWITCSEILDHHTIMAADK 1162

Query:  1187 SYNLFICQKDSAATSDE 1203
               ++FI +    A  DE
Sbjct:  1163 FDSVFILRVPEEAKQDE 1179

 Score = 94 (38.1 bits), Expect = 6.6e-11, Sum P(3) = 6.6e-11
 Identities = 22/54 (40%), Positives = 34/54 (62%)

Query:     3 SLRIIRNGIGIEEHACIDLPGI-KGIWALSIGSPKNLDNTLVLSFVGHTRVLTL 55
             SLRI+++G+ IEE A  +LPG  K IW +   +    D  +V+SF G+T +L +
Sbjct:   466 SLRILQHGLSIEELADNELPGKPKYIWTIKKDNLSEYDGYIVVSFEGNTLILEI 519

 Score = 46 (21.3 bits), Expect = 1.6e-27, Sum P(4) = 1.6e-27
 Identities = 11/51 (21%), Positives = 24/51 (47%)

Query:   108 VKEPKVELLGEISIPECLTYLDNGVVFVGSRLGDSQLVKLNRSPDENGTYV 158
             VKE   +    + I   ++ L +G +FV +  G+    + +   D+N  ++
Sbjct:   354 VKEIVCKYFDTVPIGNSISVLKSGSLFVAAEFGNHYFYQFSGIGDDNKQFM 404

 Score = 38 (18.4 bits), Expect = 1.6e-27, Sum P(4) = 1.6e-27
 Identities = 6/15 (40%), Positives = 11/15 (73%)

Query:   753 GDIDNLEILTKAHGN 767
             GD+DN+++   A+ N
Sbjct:   889 GDVDNIDVNDSANMN 903


>UNIPROTKB|F5GYG8 [details] [associations]
            symbol:DDB1 "DNA damage-binding protein 1" species:9606
            "Homo sapiens" [GO:0016055 "Wnt receptor signaling pathway"
            evidence=IEA] GO:GO:0016055 GO:GO:0003684 EMBL:AP003108
            HGNC:HGNC:2717 ChiTaRS:DDB1 EMBL:AP003037 IPI:IPI01012348
            ProteinModelPortal:F5GYG8 SMR:F5GYG8 Ensembl:ENST00000543627
            ArrayExpress:F5GYG8 Bgee:F5GYG8 Uniprot:F5GYG8
        Length = 109

 Score = 263 (97.6 bits), Expect = 2.5e-21, P = 2.5e-21
 Identities = 50/85 (58%), Positives = 67/85 (78%)

Query:   684 TQRTDLNLVVAKNNRIEIHTVTPEGLRPVKEIFLYGKIAVMKFFRGPTDKKDLLFIITQR 743
             T   DLNL++AKN R+EI+ VT EGLRPVKE+ +YGKIAVM+ FR   + KDLLFI+T +
Sbjct:    24 TSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGKIAVMELFRPKGESKDLLFILTAK 83

Query:   744 YNAMILECRGDIDNLEILTKAHGNV 768
             YNA ILE +   ++++I+T+AHGNV
Sbjct:    84 YNACILEYKQSGESIDIITRAHGNV 108

 Score = 210 (79.0 bits), Expect = 1.1e-15, P = 1.1e-15
 Identities = 42/81 (51%), Positives = 59/81 (72%)

Query:   625 NFTSSTDLNLVVAKNNRIEIHTVTPEGLRPVKEIFLYGKIAVMKFFRGPTDKKDLLFIIT 684
             +FTS+ DLNL++AKN R+EI+ VT EGLRPVKE+ +YGKIAVM+ FR   + KDLLFI+T
Sbjct:    22 HFTSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGKIAVMELFRPKGESKDLLFILT 81

Query:   685 QRTDLNLVVAKNNRIEIHTVT 705
              + +  ++  K +   I  +T
Sbjct:    82 AKYNACILEYKQSGESIDIIT 102


>TAIR|locus:2081576 [details] [associations]
            symbol:AT3G11960 species:3702 "Arabidopsis thaliana"
            [GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0005634
            "nucleus" evidence=ISM;IEA;ISS] [GO:0008150 "biological_process"
            evidence=ND] [GO:0000956 "nuclear-transcribed mRNA catabolic
            process" evidence=RCA] [GO:0006486 "protein glycosylation"
            evidence=RCA] [GO:0009755 "hormone-mediated signaling pathway"
            evidence=RCA] [GO:0010182 "sugar mediated signaling pathway"
            evidence=RCA] [GO:0048825 "cotyledon development" evidence=RCA]
            InterPro:IPR004871 Pfam:PF03178 GO:GO:0005634 EMBL:CP002686
            GenomeReviews:BA000014_GR GO:GO:0003676 KO:K12830 EMBL:BT006164
            EMBL:AK229623 IPI:IPI00530914 RefSeq:NP_187802.2 UniGene:At.5413
            ProteinModelPortal:Q84R20 IntAct:Q84R20 PaxDb:Q84R20 PRIDE:Q84R20
            EnsemblPlants:AT3G11960.1 GeneID:820369 KEGG:ath:AT3G11960
            TAIR:At3g11960 eggNOG:NOG322382 HOGENOM:HOG000030342
            InParanoid:Q84R20 OMA:GMLLRFE PhylomeDB:Q84R20
            ProtClustDB:CLSN2690873 ArrayExpress:Q84R20 Genevestigator:Q84R20
            Uniprot:Q84R20
        Length = 1379

 Score = 219 (82.2 bits), Expect = 8.1e-18, Sum P(4) = 8.1e-18
 Identities = 71/238 (29%), Positives = 115/238 (48%)

Query:   125 LTYLDNGVVFVGSRLGDSQLVKLNRSPDENGTYVSVMESFTNLAPIIDMVVVDLERQGQG 184
             + +++ G +   + + D  + KL          +  M S  N+API+D  V+D + + + 
Sbjct:   433 ILWIEGGFLATFAEMADGTVFKLGTEK------LHWMSSIQNIAPILDFSVMDDQNEKRD 486

Query:   185 QLVTCSGGFKEGSLRIIRNGIGIEE--HACIDLPGIKGIWALSIGSPKNLDNTLVLSFVG 242
             Q+  C G   EGSLRIIR+GI +E+         GI G W + +       + LVLSFV 
Sbjct:   487 QIFACCGVTPEGSLRIIRSGINVEKLLKTAPVYQGITGTWTVKMKLTDVYHSFLVLSFVE 546

Query:   243 HTRVLTLSGAEVEETEMGGFTSDQQTFYCGNVDPRTVLQVTPSAAILISTESKAR----- 297
              TRVL++  +  + T+  GF SD  TF CG V    ++Q+   A  L      A      
Sbjct:   547 ETRVLSVGLSFKDVTDSVGFQSDVCTFACGLVADGLLVQIHQDAIRLCMPTMDAHSDGIP 606

Query:   298 -----VSSWEPPNGKSISVVSCNKNQVLCATGCDVYYLEVHGSEIKQLAHRALE-YEV 349
                   SSW P N  SIS+ +  +N ++ +T  +  +L + G  +K ++ +  E YE+
Sbjct:   607 VSSPFFSSWFPEN-VSISLGAVGQNLIVVSTS-NPCFLSILG--VKSVSSQCCEIYEI 660

 Score = 135 (52.6 bits), Expect = 7.7e-09, Sum P(5) = 7.7e-09
 Identities = 48/155 (30%), Positives = 72/155 (46%)

Query:   217 GIKGIWALSIGSPKNLDNTLVLSFVGHTRVLTLSGAEVEETEMGGFTSDQQTFYCGNVDP 276
             GI G W + +       + LVLSFV  TRVL++  +  + T+  GF SD  TF CG V  
Sbjct:   521 GITGTWTVKMKLTDVYHSFLVLSFVEETRVLSVGLSFKDVTDSVGFQSDVCTFACGLVAD 580

Query:   277 RTVLQVTPSAAILISTESKAR----------VSSWEPPNGKSISVVSCNKNQVLCATG-- 324
               ++Q+   A  L      A            SSW P N  SIS+ +  +N ++ +T   
Sbjct:   581 GLLVQIHQDAIRLCMPTMDAHSDGIPVSSPFFSSWFPEN-VSISLGAVGQNLIVVSTSNP 639

Query:   325 CDVYYLEVHG-----SEIKQLAHRALEYEVACLDI 354
             C +  L V        EI ++    L+YEV+C+ +
Sbjct:   640 CFLSILGVKSVSSQCCEIYEIQRVTLQYEVSCISV 674

 Score = 96 (38.9 bits), Expect = 3.8e-05, Sum P(4) = 3.8e-05
 Identities = 25/57 (43%), Positives = 33/57 (57%)

Query:     1 EGSLRIIRNGIGIEE--HACIDLPGIKGIWALSIGSPKNLDNTLVLSFVGHTRVLTL 55
             EGSLRIIR+GI +E+         GI G W + +       + LVLSFV  TRVL++
Sbjct:   497 EGSLRIIRSGINVEKLLKTAPVYQGITGTWTVKMKLTDVYHSFLVLSFVEETRVLSV 553

 Score = 94 (38.1 bits), Expect = 8.1e-18, Sum P(4) = 8.1e-18
 Identities = 21/114 (18%), Positives = 52/114 (45%)

Query:   447 LGTQPTVLKTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLRQVNHMCSLNAESYPDS 506
             +G  P  L  F     +++ A SDRP ++ ++   L +++++ +   H   + +   P  
Sbjct:   822 IGITPVFLVPFSDSLDSDIIALSDRPWLLQTARQSLSYTSISFQPSTHATPVCSFECPQG 881

Query:   507 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQE 560
             +   +++      +   ++ + +   LG  PR++ Y   S+   +I  R D+ +
Sbjct:   882 ILFVSENCLHLVEMVHSKRRNAQKFQLGGTPRKVIYHSESKL--LIVMRTDLYD 933

 Score = 56 (24.8 bits), Expect = 8.1e-18, Sum P(4) = 8.1e-18
 Identities = 17/65 (26%), Positives = 32/65 (49%)

Query:  1006 NLLIIDQNTFEILHAHQLFPGEYALSLISSKFGEDP----NTYFVLGTAVVHPEENEPKQ 1061
             ++  +D  +  +L +++L PGE   S+   + G +      T    G A++   E E  +
Sbjct:   938 DICCVDPLSGSVLSSYKLKPGETGKSMELVRVGNEHVLVVGTSLSSGPAILPSGEAESTK 997

Query:  1062 GRIII 1066
             GR+II
Sbjct:   998 GRVII 1002

 Score = 45 (20.9 bits), Expect = 3.9e-17, Sum P(3) = 3.9e-17
 Identities = 23/109 (21%), Positives = 41/109 (37%)

Query:   779 GIIAIIDP-EARVIGLRLYNGLFKIIPLEKDNFELKASSIRMEELE-IQDVQFLHGCQNP 836
             G+   ID  +  +I   L   +F   P+  + +EL         LE +Q    +H    P
Sbjct:  1248 GLSKSIDTADDTIIAGTLLGSIFVFAPISSEEYEL---------LEGVQAKLGIHPLTAP 1298

Query:   837 TIICIHQDVNGRHVKTHEISLKEKEFTKTPWKQDNIEMEASLVIPVPEP 885
              +   H +  GR   +    + + +      +  N + E+ L  P P P
Sbjct:  1299 VLGNDHNEFRGRENPSQARKILDGDMLAQFLELTNRQQESVLSTPQPSP 1347

 Score = 42 (19.8 bits), Expect = 8.1e-18, Sum P(4) = 8.1e-18
 Identities = 14/40 (35%), Positives = 21/40 (52%)

Query:  1112 EKELRLECSHFNNIIALFLKVKGDFIL---VGDLMRSLTL 1148
             E  L L C+++   IA+ +K KG  I      D++RS  L
Sbjct:  1211 ESNLNLNCAYYMGEIAMSIK-KGCNIYKLPADDVLRSYGL 1249

 Score = 40 (19.1 bits), Expect = 7.7e-09, Sum P(5) = 7.7e-09
 Identities = 10/29 (34%), Positives = 15/29 (51%)

Query:   122 PECLTYLDNGVVFVGSRLGDSQLVKLNRS 150
             P  +  LDNG  F+   + +   VK+N S
Sbjct:   393 PRMIICLDNGDFFMFELIYEDDGVKVNLS 421

 Score = 37 (18.1 bits), Expect = 5.0e-11, Sum P(3) = 5.0e-11
 Identities = 11/44 (25%), Positives = 18/44 (40%)

Query:   394 CKEPLGGEIIPRSILMTCFEGHCYLLVALGDGSMFYFSLDPASG 437
             C +PL G ++    L     G    LV +G+  +       +SG
Sbjct:   941 CVDPLSGSVLSSYKLKPGETGKSMELVRVGNEHVLVVGTSLSSG 984


>UNIPROTKB|F5GZ34 [details] [associations]
            symbol:DDB1 "DNA damage-binding protein 1" species:9606
            "Homo sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0016055 "Wnt receptor
            signaling pathway" evidence=IEA] InterPro:IPR004871 Pfam:PF03178
            GO:GO:0005634 GO:GO:0016055 GO:GO:0003684 EMBL:AP003108
            HGNC:HGNC:2717 ChiTaRS:DDB1 EMBL:AP003037 IPI:IPI01010454
            ProteinModelPortal:F5GZ34 SMR:F5GZ34 Ensembl:ENST00000538470
            ArrayExpress:F5GZ34 Bgee:F5GZ34 Uniprot:F5GZ34
        Length = 187

 Score = 190 (71.9 bits), Expect = 1.5e-13, P = 1.5e-13
 Identities = 34/47 (72%), Positives = 43/47 (91%)

Query:  1170 MTSIEILDDELFLGAENSYNLFICQKDSAATSDEDRTHLQEVGTVHL 1216
             M+++EILDD+ FLGAEN++NLF+CQKDSAAT+DE+R HLQEVG  HL
Sbjct:     1 MSAVEILDDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFHL 47


>CGD|CAL0004426 [details] [associations]
            symbol:orf19.5391 species:5476 "Candida albicans" [GO:0071004
            "U2-type prespliceosome" evidence=IEA] [GO:0005686 "U2 snRNP"
            evidence=IEA] [GO:0030620 "U2 snRNA binding" evidence=IEA]
            [GO:0000245 "spliceosomal complex assembly" evidence=IEA]
            InterPro:IPR004871 InterPro:IPR015943 Pfam:PF03178 CGD:CAL0004426
            GO:GO:0008380 Gene3D:2.130.10.10 GO:GO:0006397 GO:GO:0005681
            GO:GO:0003676 GO:GO:0007049 eggNOG:NOG247734 EMBL:AACQ01000051
            EMBL:AACQ01000050 RefSeq:XP_717672.1 RefSeq:XP_717766.1
            STRING:Q5A7S5 GeneID:3640538 GeneID:3640666 KEGG:cal:CaO19.12846
            KEGG:cal:CaO19.5391 KO:K12830 Uniprot:Q5A7S5
        Length = 1219

 Score = 170 (64.9 bits), Expect = 5.4e-13, Sum P(2) = 5.4e-13
 Identities = 94/406 (23%), Positives = 172/406 (42%)

Query:   153 ENGTYVSVMESFTNLAPIIDMVVVDLERQGQGQLVTCSGGFKEGSLRIIRNGIGIEEHAC 212
             +N   + V+E+   L+PI D  ++D       +LVT S       ++ I +G+       
Sbjct:   428 DNLALIDVLET---LSPITDSKIID------SKLVTLSS---HSYVKSITHGVPTTTLVE 475

Query:   213 IDLPGIK-GIWALSIGSPKNLDNTLVLSFVGHTRVLTLS-GAEVEETEMGGFTSDQQTFY 270
               LP     I+   +      D  LV+S    ++ L LS G  VE+ E   F  DQ T  
Sbjct:   476 SPLPITPTDIFTTKLSLESANDEYLVISSSLSSKTLVLSIGEVVEDVEDSEFVLDQPTIA 535

Query:   271 CGNVDPRTVLQVTPSAAILIST-ESKARVSSWEPPNGKSISVVSCNKNQVLCA-TGCDVY 328
                V   +V+Q+  +    + T     + + W PP G +I+  + N  QVL A +   V 
Sbjct:   536 VQQVGIASVVQIYSNGIKHVRTVNGNKKTTDWFPPAGITITHATTNNQQVLIALSNLSVV 595

Query:   329 YLEVHGSEIKQLAHRALEYEVACLDISPLSNEETSSEPAKAQLAAVGLWTDISARLLSLP 388
             Y E+  ++  QL       E+A   I+ ++ +E  SE  K+  A +G  +D + +++SL 
Sbjct:   596 YFEIDATD-DQLIEYQDRLEIATT-ITAMAIQENISE--KSPFAIIGC-SDETIQVVSLQ 650

Query:   389 SLEEVCKEPLGGEIIPR---SILMTCFEG-HCYLLVALGDGSMFYFSLDPASGRLTDKKK 444
               E  C E    + +     S+ M    G   ++ + + +G      +D  +G L++ + 
Sbjct:   651 --EHNCLEIKSLQALSANSSSLKMLKSSGKETHVHIGMENGVYARIKIDTINGNLSNSRV 708

Query:   445 VTLGTQPTVLKTFR-SLSTTNVFACSDRPTV--IYSSNHKLVFSNVNLRQVNHMCSLNAE 501
               +G++P  L   + S     + A S  P +  +Y  + K+    + +   N    ++ +
Sbjct:   709 KYIGSKPVSLSVIKFSNEIEGILAISSAPWISYLYRDSFKIT-PLLEIDITNGSSFISED 767

Query:   502 SYPDSLALATDST---FTFGTIDEI----QKLHIRTVPLGEAPRRI 540
                + +    D+    F+ G  D +    Q L I T  L   PR++
Sbjct:   768 IGGEGIVGIKDNNLIIFSVGKEDSVFDPSQDLTIATTKLRYTPRKM 813

 Score = 98 (39.6 bits), Expect = 5.4e-13, Sum P(2) = 5.4e-13
 Identities = 40/211 (18%), Positives = 89/211 (42%)

Query:  1009 IIDQNTFEILHAHQLFPGEYALSLISSKFGED-----PNTYFVLGTAVVHPE-ENEPKQG 1062
             ++D  + +++ + QL   E  +S+ +  F +      P ++ V+G         N   + 
Sbjct:   868 VVDSKSNQVIQSLQLDGNESIVSMSAVSFNKTSTPSVPASHLVVGVCTNQTILPNSYDKS 927

Query:  1063 RIIIFHYDDGKLQQIAEKEIKGACYSMCEFNGKLLASINSTVRLFEWTNEKELRLECS-- 1120
              +  F      LQ + + E+      +  F  KLL +  + +RL++   ++ L+   +  
Sbjct:   928 YLYTFKIGKKHLQLVHKTELDHIPQVLENFQDKLLVASGNHIRLYDIGQKQLLKKSTTII 987

Query:  1121 HFNNIIALFLKVKGDFILVGDLMRSLTLLQYKTMEGSFEEISRDYNPNWMTSIEILDDEL 1180
              F+  I   +      I+      S+   ++   +  F   + D     +TSI  LD + 
Sbjct:   988 DFSTNINKIIPQTNRIIICDSHKSSIVFAKFDESQNQFVPFADDVMKRQITSIMNLDIDT 1047

Query:  1181 FLGAENSYNLFICQ--KDSAATSDEDRTHLQ 1209
              +G +   N+F+ +  +D +  +D+D T L+
Sbjct:  1048 LIGGDKFGNIFVTRIDEDISKQADDDWTILK 1078

 Score = 38 (18.4 bits), Expect = 8.3e-07, Sum P(2) = 8.3e-07
 Identities = 7/16 (43%), Positives = 12/16 (75%)

Query:   629 STDLNLVVAKNNRIEI 644
             ST++N ++ + NRI I
Sbjct:   990 STNINKIIPQTNRIII 1005

 Score = 37 (18.1 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
 Identities = 8/20 (40%), Positives = 13/20 (65%)

Query:   682 IITQRTDLNLVVAKNNRIEI 701
             II   T++N ++ + NRI I
Sbjct:   986 IIDFSTNINKIIPQTNRIII 1005


>ZFIN|ZDB-GENE-040709-2 [details] [associations]
            symbol:cpsf1 "cleavage and polyadenylation specific
            factor 1" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            [GO:0006378 "mRNA polyadenylation" evidence=IMP] [GO:0060216
            "definitive hemopoiesis" evidence=IMP] InterPro:IPR004871
            Pfam:PF03178 ZFIN:ZDB-GENE-040709-2 GO:GO:0005634 GO:GO:0006378
            GO:GO:0003676 GeneTree:ENSGT00550000075040 GO:GO:0060216
            EMBL:CU467825 IPI:IPI00932321 Ensembl:ENSDART00000110017
            ArrayExpress:F1QCJ8 Bgee:F1QCJ8 Uniprot:F1QCJ8
        Length = 1451

 Score = 127 (49.8 bits), Expect = 2.2e-11, Sum P(5) = 2.2e-11
 Identities = 48/165 (29%), Positives = 83/165 (50%)

Query:  1044 YFVLGTAVVHPEENEPKQGRIIIFHY-----DDG------KLQQIAEKEIKGACYSMCEF 1092
             Y  LGT ++  EE   + GRI+I        + G      K + + EKE KG   ++C  
Sbjct:  1128 YVALGTCLMQGEEVTCR-GRILILDVIEVVPEPGQPLTKNKFKVLYEKEQKGPVTALCHC 1186

Query:  1093 NGKLLASINSTVRLFEWT-NEKELR-LECSHFNNIIALFLKVKGDFILVGDLMRSLTLLQ 1150
             +G L+++I    ++F W+  + +L  +        I     +K +FIL  D+M+S++LL+
Sbjct:  1187 SGFLVSAIGQ--KIFLWSLKDNDLTGMAFIDTQLYIHQMYSIK-NFILAADVMKSISLLR 1243

Query:  1151 YKTMEGSFEEISRDYNPNWMTSIEILDD--EL-FLGAENSYNLFI 1192
             Y+    +   +SRD  P  + SIE + D  +L FL ++   NL +
Sbjct:  1244 YQPESKTLSLVSRDAKPLEVYSIEFMVDNNQLGFLVSDRDKNLMV 1288

 Score = 97 (39.2 bits), Expect = 2.8e-08, Sum P(4) = 2.8e-08
 Identities = 26/88 (29%), Positives = 44/88 (50%)

Query:   822 LEIQDVQFLHGCQNPTIICI---HQDVNGRHVKTHE------ISLK-EKEFTKTPWKQDN 871
             L I D++FLHG   PT++ +   +Q   GR     +      ISL   ++     W   N
Sbjct:   201 LNIIDMKFLHGYYEPTLLILFEPNQTWPGRVAVRQDTCSIVAISLNIMQKVHPVIWSLSN 260

Query:   872 IEMEASLVIPVPEPLGGAIIIGQESILY 899
             +  + + V+ VP+P+GG ++    S+LY
Sbjct:   261 LPFDCNQVMAVPKPIGGVVVFAVNSLLY 288

 Score = 82 (33.9 bits), Expect = 2.2e-11, Sum P(5) = 2.2e-11
 Identities = 21/67 (31%), Positives = 34/67 (50%)

Query:   225 SIGSPKNLDNTLVLSFVGHTRVLTLSGAEVEETEMGGFTSDQQTFYCGNV-DPRTVLQVT 283
             +I   K     L+LS    T +L  +G E+ E +  GF +   T Y GN+ D + ++QV+
Sbjct:   567 TIEDDKKKHGFLILSREDSTMILQ-TGQEIMELDTSGFATQGPTVYAGNIGDNKYIIQVS 625

Query:   284 PSAAILI 290
             P    L+
Sbjct:   626 PMGIRLL 632

 Score = 71 (30.1 bits), Expect = 2.2e-11, Sum P(5) = 2.2e-11
 Identities = 19/57 (33%), Positives = 30/57 (52%)

Query:   103 DGTFSVKEPKVELLGEISIPECLTYLDNGVVFVGSRLGDSQLV----KLNRSPDENG 155
             DG  SV+    +      +  C+  ++ G +F+GSRLG+S L+    KL  +P E G
Sbjct:   352 DGMRSVRAFHFDKAAASVLTTCMMTMEPGYLFLGSRLGNSLLLRYTEKLQETPMEEG 408

 Score = 65 (27.9 bits), Expect = 2.2e-11, Sum P(5) = 2.2e-11
 Identities = 12/40 (30%), Positives = 22/40 (55%)

Query:   185 QLVTCSGGFKEGSLRIIRNGIGIEEHACIDLPGIKGIWAL 224
             ++V CSG  K G+L +++  I  +     +LPG   +W +
Sbjct:   501 EVVVCSGYGKNGALSVLQKSIRPQVVTTFELPGCHDMWTV 540

 Score = 50 (22.7 bits), Expect = 2.2e-11, Sum P(5) = 2.2e-11
 Identities = 15/54 (27%), Positives = 25/54 (46%)

Query:   810 FELKASSI--RMEELEIQDVQFLHGCQNPTIICIHQDVNGRHVKTHEISLKEKE 861
             F LK  S   +   L +Q  Q +H       +C ++DV+G     +++S   KE
Sbjct:   671 FVLKNDSYMGKSHRLALQKPQ-IHTQSRVITLCAYRDVSGMFTTENKVSFLAKE 723

 Score = 49 (22.3 bits), Expect = 2.8e-08, Sum P(4) = 2.8e-08
 Identities = 20/73 (27%), Positives = 32/73 (43%)

Query:   659 FLYGKIAVMKFFRGPTDKKDLLFIITQRTDLNLVVAKNNRIEIHTVTPEGLRPVKEIFLY 718
             F   K++V+++  G  D K L     +  +L     +N  I +  V PE    V  + +Y
Sbjct:    98 FKDAKLSVVEYDPGTHDLKTLSLHYFEEPELRDGFVQNVHIPMVRVDPENRCAV--MLVY 155

Query:   719 GKIAVMKFFRGPT 731
             G   V+  FR  T
Sbjct:   156 GTCLVVLPFRKDT 168

 Score = 49 (22.3 bits), Expect = 2.8e-08, Sum P(4) = 2.8e-08
 Identities = 22/104 (21%), Positives = 41/104 (39%)

Query:   707 EGLRPVKEIFLYGKIAVMKFFRGPTDKKDLLFIITQRYNAMILECRGDIDNLEILTKAHG 766
             E L  V    L+G +  M   +     +D L +  +     ++E      +L+ L+  + 
Sbjct:    64 EKLEQVASFSLFGNVMSMASVQLVGTNRDALLLSFKDAKLSVVEYDPGTHDLKTLSLHYF 123

Query:   767 NVSD-RIGKPSENGIIAI-IDPEARVIGLRLYNGLFKIIPLEKD 808
                + R G      I  + +DPE R   + +Y     ++P  KD
Sbjct:   124 EEPELRDGFVQNVHIPMVRVDPENRCAVMLVYGTCLVVLPFRKD 167

 Score = 47 (21.6 bits), Expect = 2.8e-08, Sum P(4) = 2.8e-08
 Identities = 9/23 (39%), Positives = 16/23 (69%)

Query:   625 NFTSSTDLNLVVAKNNRIEIHTV 647
             NF SS + NLVVA  +++ ++ +
Sbjct:    21 NFISSQEKNLVVAGTSQLYVYRI 43

 Score = 40 (19.1 bits), Expect = 3.1e-06, Sum P(4) = 3.1e-06
 Identities = 7/29 (24%), Positives = 15/29 (51%)

Query:     2 GSLRIIRNGIGIEEHACIDLPGIKGIWAL 30
             G+L +++  I  +     +LPG   +W +
Sbjct:   512 GALSVLQKSIRPQVVTTFELPGCHDMWTV 540

 Score = 39 (18.8 bits), Expect = 3.0e-07, Sum P(5) = 3.0e-07
 Identities = 13/37 (35%), Positives = 18/37 (48%)

Query:   671 RGPT---DKKDLLFIITQRTDLNLVVAKNNRI-EIHT 703
             R PT   DKK   F+I  R D  +++     I E+ T
Sbjct:   564 REPTIEDDKKKHGFLILSREDSTMILQTGQEIMELDT 600

 Score = 37 (18.1 bits), Expect = 4.5e-10, Sum P(5) = 4.5e-10
 Identities = 7/27 (25%), Positives = 14/27 (51%)

Query:   528 IRTVPLGEAPRRIAYQESSQTFGVITT 554
             +R +PL      ++Y   S+ + V T+
Sbjct:  1021 VRKIPLRCTVHYVSYHVESKVYAVCTS 1047


>TAIR|locus:2153122 [details] [associations]
            symbol:CPSF160 "cleavage and polyadenylation specificity
            factor 160" species:3702 "Arabidopsis thaliana" [GO:0003676
            "nucleic acid binding" evidence=IEA] [GO:0005634 "nucleus"
            evidence=ISM;IEA;IDA] [GO:0006378 "mRNA polyadenylation"
            evidence=ISS] [GO:0006379 "mRNA cleavage" evidence=ISS] [GO:0005515
            "protein binding" evidence=IPI] [GO:0005829 "cytosol" evidence=IDA]
            [GO:0006397 "mRNA processing" evidence=RCA] [GO:0009909 "regulation
            of flower development" evidence=RCA] [GO:0016570 "histone
            modification" evidence=RCA] [GO:0048449 "floral organ formation"
            evidence=RCA] InterPro:IPR004871 Pfam:PF03178 GO:GO:0005829
            GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0006397
            GO:GO:0003723 eggNOG:COG5161 KO:K14401 EMBL:AY140902 EMBL:AB025607
            EMBL:AB018109 IPI:IPI00533913 RefSeq:NP_199979.2 UniGene:At.43551
            IntAct:Q9FGR0 STRING:Q9FGR0 PaxDb:Q9FGR0 PRIDE:Q9FGR0
            EnsemblPlants:AT5G51660.1 GeneID:835240 KEGG:ath:AT5G51660
            TAIR:At5g51660 HOGENOM:HOG000265012 InParanoid:Q9FGR0 OMA:NIGDNRY
            PhylomeDB:Q9FGR0 ProtClustDB:CLSN2680511 Genevestigator:Q9FGR0
            GermOnline:AT5G51660 Uniprot:Q9FGR0
        Length = 1442

 Score = 127 (49.8 bits), Expect = 3.6e-11, Sum P(3) = 3.6e-11
 Identities = 40/157 (25%), Positives = 79/157 (50%)

Query:  1030 LSLISSKFGEDPNTYFVLGTAVVHPEENEPKQGRIIIFHY----DDGK--LQQIAEKEIK 1083
             ++L+++  GE+  T   +GTA V  E+   + GR+++F +    D+ +  + ++  +E+K
Sbjct:  1117 VTLLNASTGEN-ETLLAVGTAYVQGEDVAAR-GRVLLFSFGKNGDNSQNVVTEVYSRELK 1174

Query:  1084 GACYSMCEFNGKLLASINSTVRLFEWTNEKELRLECSHFNN--IIALFLKVKGDFILVGD 1141
             GA  ++    G LL S    + L +W N  EL    + F+   +  + + V   FIL+GD
Sbjct:  1175 GAISAVASIQGHLLISSGPKIILHKW-NGTELN-GVAFFDAPPLYVVSMNVVKSFILLGD 1232

Query:  1142 LMRSLTLLQYKTMEGSFEEISRDYNPNWMTSIEILDD 1178
             + +S+  L +K        +++D+      + E L D
Sbjct:  1233 VHKSIYFLSWKEQGSQLSLLAKDFESLDCFATEFLID 1269

 Score = 115 (45.5 bits), Expect = 3.6e-11, Sum P(3) = 3.6e-11
 Identities = 47/177 (26%), Positives = 75/177 (42%)

Query:   159 SVMESFTNLAPIIDMV----------VVDLERQGQGQLVTCSGGFKEGSLRIIRNGIGIE 208
             +V +S  N+ P+ D               + +Q   +LV CSG  K G+L ++R  I  E
Sbjct:   506 AVRDSLVNVGPVKDFAYGLRINADANATGVSKQSNYELVCCSGHGKNGALCVLRQSIRPE 565

Query:   209 EHACIDLPGIKGIWALSIGSPK--NLDNT------------LVLSFVGHTRVLTLSGAEV 254
                 ++LPG KGIW +   S +  N D++            L++S    T VL  +    
Sbjct:   566 MITEVELPGCKGIWTVYHKSSRGHNADSSKMAADEDEYHAYLIISLEARTMVLETADLLT 625

Query:   255 EETEMGGFTSDQQTFYCGNV-DPRTVLQVTPSAAILISTESKARVSSWEPPNGKSIS 310
             E TE   +    +T   GN+   R V+QV    A ++      +  S+   N +S S
Sbjct:   626 EVTESVDYYVQGRTIAAGNLFGRRRVIQVFEHGARILDGSFMNQELSFGASNSESNS 682

 Score = 104 (41.7 bits), Expect = 6.6e-09, Sum P(2) = 6.6e-09
 Identities = 31/106 (29%), Positives = 51/106 (48%)

Query:   817 IRMEELE---IQDVQFLHGCQNPTIICIHQDVN---GR-HVKTHEISLKEKEFTKT---- 865
             I + +LE   ++D  FLHG   P I+ + ++ +   GR   K H   L       T    
Sbjct:   239 INLRDLEMKHVKDFVFLHGYIEPVIVILQEEEHTWAGRVSWKHHTCVLSALSINSTLKQH 298

Query:   866 P--WKQDNIEMEASLVIPVPEPLGGAIIIGQESILYHSGKSYVAVA 909
             P  W   N+  +A  ++ VP P+GG +++   +I YHS  +  A+A
Sbjct:   299 PVIWSAINLPHDAYKLLAVPSPIGGVLVLCANTIHYHSQSASCALA 344

 Score = 61 (26.5 bits), Expect = 3.6e-11, Sum P(3) = 3.6e-11
 Identities = 12/24 (50%), Positives = 18/24 (75%)

Query:   125 LTYLDNGVVFVGSRLGDSQLVKLN 148
             +T + N + F+GSRLGDS LV+ +
Sbjct:   418 ITSVGNSLFFLGSRLGDSLLVQFS 441

 Score = 61 (26.5 bits), Expect = 0.00069, Sum P(3) = 0.00069
 Identities = 12/29 (41%), Positives = 18/29 (62%)

Query:     2 GSLRIIRNGIGIEEHACIDLPGIKGIWAL 30
             G+L ++R  I  E    ++LPG KGIW +
Sbjct:   553 GALCVLRQSIRPEMITEVELPGCKGIWTV 581

 Score = 42 (19.8 bits), Expect = 0.00069, Sum P(3) = 0.00069
 Identities = 10/33 (30%), Positives = 16/33 (48%)

Query:    36 KNLDNTLVLSFVGHTRVLTLSGAEWGFHLLRGF 68
             KN ++      + +TRV+ L+   W  H  R F
Sbjct:   829 KNSEDNTSSKEIKNTRVVELAMQRWSGHHTRPF 861


>UNIPROTKB|J9P418 [details] [associations]
            symbol:CPSF1 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] InterPro:IPR004871
            Pfam:PF03178 GO:GO:0005634 GO:GO:0003676
            GeneTree:ENSGT00550000075040 EMBL:AAEX03008966
            Ensembl:ENSCAFT00000043656 Uniprot:J9P418
        Length = 1107

 Score = 129 (50.5 bits), Expect = 1.2e-09, Sum P(5) = 1.2e-09
 Identities = 47/165 (28%), Positives = 80/165 (48%)

Query:  1044 YFVLGTAVVHPEENEPKQGRIIIFHY-----DDG------KLQQIAEKEIKGACYSMCEF 1092
             Y   GT ++  EE   + GRI+I        + G      K + + EKE KG   ++C  
Sbjct:   784 YVAAGTCLMQGEEVTCR-GRILIMDVIEVVPEPGQPLTKNKFKVLYEKEQKGPVTALCHC 842

Query:  1093 NGKLLASINSTVRLFEWT-NEKELR-LECSHFNNIIALFLKVKGDFILVGDLMRSLTLLQ 1150
             NG L+++I    ++F W+    EL  +        I   + VK +FIL  D+M+S++LL+
Sbjct:   843 NGHLVSAIGQ--KIFLWSLRASELTGMAFIDTQLYIHQMISVK-NFILAADVMKSISLLR 899

Query:  1151 YKTMEGSFEEISRDYNPNWMTSIEILDDELFLG---AENSYNLFI 1192
             Y+    +   +SRD  P  + S++ + D   LG   ++   NL +
Sbjct:   900 YQEESKTLSLVSRDAKPLEVYSVDFMVDNAQLGFLVSDRDRNLMV 944

 Score = 77 (32.2 bits), Expect = 1.2e-09, Sum P(5) = 1.2e-09
 Identities = 18/50 (36%), Positives = 29/50 (58%)

Query:   236 LVLSFVGHTRVLTLSGAEVEETEMGGFTSDQQTFYCGNV-DPRTVLQVTP 284
             L+LS    T +L  +G E+ E +  GF +   T + GN+ D R ++QV+P
Sbjct:   239 LILSREDSTMILQ-TGQEIMELDTSGFATQGPTVFAGNIGDNRYIVQVSP 287

 Score = 66 (28.3 bits), Expect = 1.2e-09, Sum P(5) = 1.2e-09
 Identities = 14/51 (27%), Positives = 25/51 (49%)

Query:   185 QLVTCSGGFKEGSLRIIRNGIGIEEHACIDLPGIKGIWALSIGSPKNLDNT 235
             ++V CSG  K G+L +++  I  +     +LPG   +W +     K  + T
Sbjct:   164 EIVVCSGYGKNGALSVLQKSIRPQVVTTFELPGCYDMWTVIAPVRKEQEET 214

 Score = 58 (25.5 bits), Expect = 1.2e-09, Sum P(5) = 1.2e-09
 Identities = 15/51 (29%), Positives = 25/51 (49%)

Query:   103 DGTFSVKEPKVELLGEISIPECLTYLDNGVVFVGSRLGDSQLVKLNRSPDE 153
             DG  SV+    +      +   +  ++ G +F+GSRLG+S L+K      E
Sbjct:    18 DGMRSVRAFHFDKAAASVLTTSMVTMEPGYLFLGSRLGNSLLLKYTEKLQE 68

 Score = 41 (19.5 bits), Expect = 1.2e-09, Sum P(5) = 1.2e-09
 Identities = 8/27 (29%), Positives = 14/27 (51%)

Query:   528 IRTVPLGEAPRRIAYQESSQTFGVITT 554
             +R +PL      +AY   S+ + V T+
Sbjct:   677 VRKIPLRCTAHYVAYHVESKVYAVATS 703

 Score = 40 (19.1 bits), Expect = 1.4e-05, Sum P(4) = 1.4e-05
 Identities = 9/40 (22%), Positives = 18/40 (45%)

Query:     2 GSLRIIRNGIGIEEHACIDLPGIKGIWALSIGSPKNLDNT 41
             G+L +++  I  +     +LPG   +W +     K  + T
Sbjct:   175 GALSVLQKSIRPQVVTTFELPGCYDMWTVIAPVRKEQEET 214

 Score = 37 (18.1 bits), Expect = 2.6e-09, Sum P(5) = 2.6e-09
 Identities = 6/18 (33%), Positives = 11/18 (61%)

Query:   830 LHGCQNPTIICIHQDVNG 847
             LH       +C+++DV+G
Sbjct:   353 LHHQSKVITLCVYRDVSG 370


>UNIPROTKB|Q10569 [details] [associations]
            symbol:CPSF1 "Cleavage and polyadenylation specificity
            factor subunit 1" species:9913 "Bos taurus" [GO:0005847 "mRNA
            cleavage and polyadenylation specificity factor complex"
            evidence=ISS] [GO:0006379 "mRNA cleavage" evidence=IEA] [GO:0006378
            "mRNA polyadenylation" evidence=IEA] [GO:0003730 "mRNA 3'-UTR
            binding" evidence=IEA] InterPro:IPR004871 Pfam:PF03178
            GO:GO:0006378 GO:GO:0003730 eggNOG:COG5161 KO:K14401 GO:GO:0005847
            GO:GO:0006379 GeneTree:ENSGT00550000075040 OMA:NIGDNRY EMBL:X83097
            IPI:IPI00713487 PIR:S57335 RefSeq:NP_777145.1 UniGene:Bt.4911
            STRING:Q10569 PRIDE:Q10569 Ensembl:ENSBTAT00000011004 GeneID:282703
            KEGG:bta:282703 CTD:29894 HOGENOM:HOG000007904 HOVERGEN:HBG051105
            InParanoid:Q10569 OrthoDB:EOG4BCDM3 NextBio:20806363
            ArrayExpress:Q10569 Uniprot:Q10569
        Length = 1444

 Score = 129 (50.5 bits), Expect = 1.9e-09, Sum P(5) = 1.9e-09
 Identities = 47/165 (28%), Positives = 80/165 (48%)

Query:  1044 YFVLGTAVVHPEENEPKQGRIIIFHY-----DDG------KLQQIAEKEIKGACYSMCEF 1092
             Y   GT ++  EE   + GRI+I        + G      K + + EKE KG   ++C  
Sbjct:  1121 YVAAGTCLMQGEEVTCR-GRILIMDVIEVVPEPGQPLTKNKFKVLYEKEQKGPVTALCHC 1179

Query:  1093 NGKLLASINSTVRLFEWT-NEKELR-LECSHFNNIIALFLKVKGDFILVGDLMRSLTLLQ 1150
             NG L+++I    ++F W+    EL  +        I   + VK +FIL  D+M+S++LL+
Sbjct:  1180 NGHLVSAIGQ--KIFLWSLRASELTGMAFIDTQLYIHQMISVK-NFILAADVMKSISLLR 1236

Query:  1151 YKTMEGSFEEISRDYNPNWMTSIEILDDELFLG---AENSYNLFI 1192
             Y+    +   +SRD  P  + S++ + D   LG   ++   NL +
Sbjct:  1237 YQEESKTLSLVSRDAKPLEVYSVDFMVDNAQLGFLVSDRDRNLMV 1281

 Score = 95 (38.5 bits), Expect = 1.1e-07, Sum P(4) = 1.1e-07
 Identities = 26/88 (29%), Positives = 43/88 (48%)

Query:   822 LEIQDVQFLHGCQNPTIICI---HQDVNGRHVKTHE------ISLK-EKEFTKTPWKQDN 871
             L I D+QFLHG   PT++ +   +Q   GR     +      ISL   ++     W   +
Sbjct:   204 LNIVDLQFLHGYYEPTLLILFEPNQTWPGRVAVRQDTCSIVAISLNITQKVHPVIWSLTS 263

Query:   872 IEMEASLVIPVPEPLGGAIIIGQESILY 899
             +  + +  + VP+P+GG +I    S+LY
Sbjct:   264 LPFDCTQALAVPKPIGGVVIFAVNSLLY 291

 Score = 77 (32.2 bits), Expect = 1.9e-09, Sum P(5) = 1.9e-09
 Identities = 18/50 (36%), Positives = 29/50 (58%)

Query:   236 LVLSFVGHTRVLTLSGAEVEETEMGGFTSDQQTFYCGNV-DPRTVLQVTP 284
             L+LS    T +L  +G E+ E +  GF +   T + GN+ D R ++QV+P
Sbjct:   576 LILSREDSTMILQ-TGQEIMELDASGFATQGPTVFAGNIGDNRYIVQVSP 624

 Score = 70 (29.7 bits), Expect = 1.9e-09, Sum P(5) = 1.9e-09
 Identities = 15/52 (28%), Positives = 26/52 (50%)

Query:   185 QLVTCSGGFKEGSLRIIRNGIGIEEHACIDLPGIKGIWALSIGSPKNLDNTL 236
             ++V CSG  K G+L +++  I  +     +LPG   +W +     K  + TL
Sbjct:   501 EIVVCSGYGKNGALSVLQKSIRPQVVTTFELPGCYDMWTVIAPVRKEQEETL 552

 Score = 58 (25.5 bits), Expect = 1.9e-09, Sum P(5) = 1.9e-09
 Identities = 15/51 (29%), Positives = 25/51 (49%)

Query:   103 DGTFSVKEPKVELLGEISIPECLTYLDNGVVFVGSRLGDSQLVKLNRSPDE 153
             DG  SV+    +      +   +  ++ G +F+GSRLG+S L+K      E
Sbjct:   355 DGMRSVRAFHFDKAAASVLTTSMVTMEPGYLFLGSRLGNSLLLKYTEKLQE 405

 Score = 48 (22.0 bits), Expect = 1.1e-07, Sum P(4) = 1.1e-07
 Identities = 9/32 (28%), Positives = 20/32 (62%)

Query:   625 NFTSSTDLNLVVAKNNRIEIHTVTPEGLRPVK 656
             NF ++++ NLVVA  +++ ++ +  +   P K
Sbjct:    21 NFFNNSERNLVVAGTSQLYVYRLNRDSEAPTK 52

 Score = 44 (20.5 bits), Expect = 1.8e-05, Sum P(4) = 1.8e-05
 Identities = 10/41 (24%), Positives = 19/41 (46%)

Query:     2 GSLRIIRNGIGIEEHACIDLPGIKGIWALSIGSPKNLDNTL 42
             G+L +++  I  +     +LPG   +W +     K  + TL
Sbjct:   512 GALSVLQKSIRPQVVTTFELPGCYDMWTVIAPVRKEQEETL 552

 Score = 42 (19.8 bits), Expect = 1.1e-07, Sum P(4) = 1.1e-07
 Identities = 22/120 (18%), Positives = 47/120 (39%)

Query:   695 KNNRI---EIHTVTPEGLRPVKEIFLYGKIAVMKFFRGPTDKKDLLFIITQRYNAMILEC 751
             KN+R    + H    E L  V     +G +  M   +    K+D L +  +     ++E 
Sbjct:    52 KNDRSTDGKAHREHREKLELVASFSFFGNVMSMASVQLAGAKRDALLLSFKDAKLSVVEY 111

Query:   752 RGDIDNLEILTKAHGNVSD-RIGKPSENGIIAI-IDPEARVIGLRLYNGLFKIIPLEKDN 809
                  +L+ L+  +    + R G         + +DP+ R   + +Y     ++P  +++
Sbjct:   112 DPGTHDLKTLSLHYFEEPELRDGFVQNVHTPRVRVDPDGRCAAMLIYGTRLVVLPFRRES 171

 Score = 41 (19.5 bits), Expect = 1.9e-09, Sum P(5) = 1.9e-09
 Identities = 8/27 (29%), Positives = 14/27 (51%)

Query:   528 IRTVPLGEAPRRIAYQESSQTFGVITT 554
             +R +PL      +AY   S+ + V T+
Sbjct:  1014 VRKIPLRCTAHYVAYHVESKVYAVATS 1040

 Score = 39 (18.8 bits), Expect = 3.7e-07, Sum P(3) = 3.7e-07
 Identities = 12/50 (24%), Positives = 24/50 (48%)

Query:   665 AVMKFFRGPTDKKDLLFI-ITQRTDLNLVVAKNNRIEIHTVTPEGLRPVK 713
             AV K    PT  +  ++      ++ NLVVA  +++ ++ +  +   P K
Sbjct:     3 AVYKQAHPPTGLEFSMYCNFFNNSERNLVVAGTSQLYVYRLNRDSEAPTK 52

 Score = 37 (18.1 bits), Expect = 4.3e-09, Sum P(5) = 4.3e-09
 Identities = 6/18 (33%), Positives = 11/18 (61%)

Query:   830 LHGCQNPTIICIHQDVNG 847
             LH       +C+++DV+G
Sbjct:   690 LHHQSKVITLCVYRDVSG 707


>UNIPROTKB|Q10570 [details] [associations]
            symbol:CPSF1 "Cleavage and polyadenylation specificity
            factor subunit 1" species:9606 "Homo sapiens" [GO:0003730 "mRNA
            3'-UTR binding" evidence=IDA] [GO:0006379 "mRNA cleavage"
            evidence=IDA] [GO:0006378 "mRNA polyadenylation" evidence=IDA]
            [GO:0005847 "mRNA cleavage and polyadenylation specificity factor
            complex" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0000398 "mRNA splicing, via spliceosome" evidence=TAS]
            [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006366 "transcription
            from RNA polymerase II promoter" evidence=TAS] [GO:0006369
            "termination of RNA polymerase II transcription" evidence=TAS]
            [GO:0006397 "mRNA processing" evidence=TAS] [GO:0006406 "mRNA
            export from nucleus" evidence=TAS] [GO:0008380 "RNA splicing"
            evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
            [GO:0031124 "mRNA 3'-end processing" evidence=TAS]
            Reactome:REACT_71 InterPro:IPR004871 Pfam:PF03178
            Reactome:REACT_1675 GO:GO:0006378 GO:GO:0003730 GO:GO:0006406
            GO:GO:0000398 Reactome:REACT_1788 eggNOG:COG5161 KO:K14401
            GO:GO:0005847 GO:GO:0006379 GO:GO:0006369 Reactome:REACT_78
            OMA:NIGDNRY CTD:29894 HOGENOM:HOG000007904 HOVERGEN:HBG051105
            OrthoDB:EOG4BCDM3 EMBL:U37012 EMBL:BC017232 IPI:IPI00026219
            RefSeq:NP_037423.2 UniGene:Hs.493202 ProteinModelPortal:Q10570
            DIP:DIP-32694N IntAct:Q10570 MINT:MINT-1601544 STRING:Q10570
            PhosphoSite:Q10570 DMDM:23503048 PaxDb:Q10570 PeptideAtlas:Q10570
            PRIDE:Q10570 DNASU:29894 Ensembl:ENST00000349769
            Ensembl:ENST00000568627 GeneID:29894 KEGG:hsa:29894 UCSC:uc003zcj.3
            GeneCards:GC08M145618 HGNC:HGNC:2324 MIM:606027 neXtProt:NX_Q10570
            PharmGKB:PA26841 InParanoid:Q10570 PhylomeDB:Q10570 ChiTaRS:CPSF1
            GenomeRNAi:29894 NextBio:52452 ArrayExpress:Q10570 Bgee:Q10570
            CleanEx:HS_CPSF1 Genevestigator:Q10570 GermOnline:ENSG00000071894
            Uniprot:Q10570
        Length = 1443

 Score = 129 (50.5 bits), Expect = 2.3e-09, Sum P(5) = 2.3e-09
 Identities = 47/165 (28%), Positives = 80/165 (48%)

Query:  1044 YFVLGTAVVHPEENEPKQGRIIIFHY-----DDG------KLQQIAEKEIKGACYSMCEF 1092
             Y   GT ++  EE   + GRI+I        + G      K + + EKE KG   ++C  
Sbjct:  1120 YVAAGTCLMQGEEVTCR-GRILIMDVIEVVPEPGQPLTKNKFKVLYEKEQKGPVTALCHC 1178

Query:  1093 NGKLLASINSTVRLFEWT-NEKELR-LECSHFNNIIALFLKVKGDFILVGDLMRSLTLLQ 1150
             NG L+++I    ++F W+    EL  +        I   + VK +FIL  D+M+S++LL+
Sbjct:  1179 NGHLVSAIGQ--KIFLWSLRASELTGMAFIDTQLYIHQMISVK-NFILAADVMKSISLLR 1235

Query:  1151 YKTMEGSFEEISRDYNPNWMTSIEILDDELFLG---AENSYNLFI 1192
             Y+    +   +SRD  P  + S++ + D   LG   ++   NL +
Sbjct:  1236 YQEESKTLSLVSRDAKPLEVYSVDFMVDNAQLGFLVSDRDRNLMV 1280

 Score = 93 (37.8 bits), Expect = 3.1e-06, Sum P(5) = 3.1e-06
 Identities = 25/88 (28%), Positives = 43/88 (48%)

Query:   822 LEIQDVQFLHGCQNPTIICI---HQDVNGRHVKTHE------ISLK-EKEFTKTPWKQDN 871
             L I D+QFLHG   PT++ +   +Q   GR     +      ISL   ++     W   +
Sbjct:   201 LNIIDLQFLHGYYEPTLLILFEPNQTWPGRVAVRQDTCSIVAISLNITQKVHPVIWSLTS 260

Query:   872 IEMEASLVIPVPEPLGGAIIIGQESILY 899
             +  + +  + VP+P+GG ++    S+LY
Sbjct:   261 LPFDCTQALAVPKPIGGVVVFAVNSLLY 288

 Score = 77 (32.2 bits), Expect = 2.3e-09, Sum P(5) = 2.3e-09
 Identities = 18/50 (36%), Positives = 29/50 (58%)

Query:   236 LVLSFVGHTRVLTLSGAEVEETEMGGFTSDQQTFYCGNV-DPRTVLQVTP 284
             L+LS    T +L  +G E+ E +  GF +   T + GN+ D R ++QV+P
Sbjct:   575 LILSREDSTMILQ-TGQEIMELDTSGFATQGPTVFAGNIGDNRYIVQVSP 623

 Score = 69 (29.3 bits), Expect = 2.3e-09, Sum P(5) = 2.3e-09
 Identities = 22/86 (25%), Positives = 39/86 (45%)

Query:   149 RSPDENGTY-VSVMESFTNLAPIIDMVVVD---LERQGQG------QLVTCSGGFKEGSL 198
             +S  +  TY   V +S  N+ P  +  V +   L  + Q       ++V CSG  K G+L
Sbjct:   453 QSGTQLATYSFEVCDSILNIGPCANAAVGEPAFLSEEFQNSPEPDLEIVVCSGHGKNGAL 512

Query:   199 RIIRNGIGIEEHACIDLPGIKGIWAL 224
              +++  I  +     +LPG   +W +
Sbjct:   513 SVLQKSIRPQVVTTFELPGCYDMWTV 538

 Score = 58 (25.5 bits), Expect = 2.3e-09, Sum P(5) = 2.3e-09
 Identities = 15/51 (29%), Positives = 25/51 (49%)

Query:   103 DGTFSVKEPKVELLGEISIPECLTYLDNGVVFVGSRLGDSQLVKLNRSPDE 153
             DG  SV+    +      +   +  ++ G +F+GSRLG+S L+K      E
Sbjct:   352 DGMRSVRAFHFDKAAASVLTTSMVTMEPGYLFLGSRLGNSLLLKYTEKLQE 402

 Score = 41 (19.5 bits), Expect = 2.3e-09, Sum P(5) = 2.3e-09
 Identities = 8/27 (29%), Positives = 14/27 (51%)

Query:   528 IRTVPLGEAPRRIAYQESSQTFGVITT 554
             +R +PL      +AY   S+ + V T+
Sbjct:  1013 VRKIPLRCTAHYVAYHVESKVYAVATS 1039

 Score = 40 (19.1 bits), Expect = 3.1e-06, Sum P(5) = 3.1e-06
 Identities = 7/21 (33%), Positives = 16/21 (76%)

Query:   625 NFTSSTDLNLVVAKNNRIEIH 645
             NF ++++ NLVVA  +++ ++
Sbjct:    21 NFFNNSERNLVVAGTSQLYVY 41

 Score = 40 (19.1 bits), Expect = 3.1e-06, Sum P(5) = 3.1e-06
 Identities = 5/26 (19%), Positives = 14/26 (53%)

Query:   784 IDPEARVIGLRLYNGLFKIIPLEKDN 809
             +DP+ R   + +Y     ++P  +++
Sbjct:   143 VDPDGRCAAMLVYGTRLVVLPFRRES 168

 Score = 39 (18.8 bits), Expect = 3.5e-09, Sum P(5) = 3.5e-09
 Identities = 19/67 (28%), Positives = 28/67 (41%)

Query:   952 DGTFSVKEPKVELLGEHCKGPVVEMSSLSYIKPGSTKQSTANQ-PADFNMEVEVHNLLII 1010
             +G  S   P V+   E   G    + S S  +   + Q  A++ PA F  E     LL+ 
Sbjct:   730 EGLGSETSPTVDDEEEMLYGDSGSLFSPSKEEARRSSQPPADRDPAPFRAEPTHWCLLVR 789

Query:  1011 DQNTFEI 1017
             +  T EI
Sbjct:   790 ENGTMEI 796

 Score = 39 (18.8 bits), Expect = 5.4e-05, Sum P(4) = 5.4e-05
 Identities = 7/29 (24%), Positives = 15/29 (51%)

Query:     2 GSLRIIRNGIGIEEHACIDLPGIKGIWAL 30
             G+L +++  I  +     +LPG   +W +
Sbjct:   510 GALSVLQKSIRPQVVTTFELPGCYDMWTV 538


>MGI|MGI:2679722 [details] [associations]
            symbol:Cpsf1 "cleavage and polyadenylation specific factor
            1" species:10090 "Mus musculus" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003730
            "mRNA 3'-UTR binding" evidence=ISO] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0005847 "mRNA cleavage and polyadenylation
            specificity factor complex" evidence=ISO] [GO:0006378 "mRNA
            polyadenylation" evidence=ISO] [GO:0006379 "mRNA cleavage"
            evidence=ISO] [GO:0006397 "mRNA processing" evidence=IEA]
            InterPro:IPR004871 Pfam:PF03178 MGI:MGI:2679722 GO:GO:0006378
            GO:GO:0003730 eggNOG:COG5161 KO:K14401 GO:GO:0005847 GO:GO:0006379
            GeneTree:ENSGT00550000075040 OMA:NIGDNRY CTD:29894
            HOGENOM:HOG000007904 HOVERGEN:HBG051105 OrthoDB:EOG4BCDM3
            EMBL:AF322193 EMBL:BC056388 IPI:IPI00110363 RefSeq:NP_001157645.1
            RefSeq:NP_444423.1 UniGene:Mm.45141 ProteinModelPortal:Q9EPU4
            STRING:Q9EPU4 PhosphoSite:Q9EPU4 PaxDb:Q9EPU4 PRIDE:Q9EPU4
            Ensembl:ENSMUST00000071898 GeneID:94230 KEGG:mmu:94230
            UCSC:uc007wky.2 InParanoid:Q9EPU4 NextBio:352239 Bgee:Q9EPU4
            CleanEx:MM_CPSF1 Genevestigator:Q9EPU4
            GermOnline:ENSMUSG00000034022 Uniprot:Q9EPU4
        Length = 1441

 Score = 129 (50.5 bits), Expect = 2.8e-09, Sum P(5) = 2.8e-09
 Identities = 47/165 (28%), Positives = 80/165 (48%)

Query:  1044 YFVLGTAVVHPEENEPKQGRIIIFHY-----DDG------KLQQIAEKEIKGACYSMCEF 1092
             Y   GT ++  EE   + GRI+I        + G      K + + EKE KG   ++C  
Sbjct:  1118 YVAAGTCLMQGEEVTCR-GRILIMDVIEVVPEPGQPLTKNKFKVLYEKEQKGPVTALCHC 1176

Query:  1093 NGKLLASINSTVRLFEWT-NEKELR-LECSHFNNIIALFLKVKGDFILVGDLMRSLTLLQ 1150
             NG L+++I    ++F W+    EL  +        I   + VK +FIL  D+M+S++LL+
Sbjct:  1177 NGHLVSAIGQ--KIFLWSLRASELTGMAFIDTQLYIHQMISVK-NFILAADVMKSISLLR 1233

Query:  1151 YKTMEGSFEEISRDYNPNWMTSIEILDDELFLG---AENSYNLFI 1192
             Y+    +   +SRD  P  + S++ + D   LG   ++   NL +
Sbjct:  1234 YQEESKTLSLVSRDAKPLEVYSVDFMVDNAQLGFLVSDRDRNLMV 1278

 Score = 94 (38.1 bits), Expect = 9.9e-07, Sum P(4) = 9.9e-07
 Identities = 26/88 (29%), Positives = 43/88 (48%)

Query:   822 LEIQDVQFLHGCQNPTIICI---HQDVNGRHVKTHE------ISLK-EKEFTKTPWKQDN 871
             L I D+QFLHG   PT++ +   +Q   GR     +      ISL   ++     W   +
Sbjct:   201 LNIIDLQFLHGYYEPTLLILFEPNQTWPGRVAVRQDTCSIVAISLNITQKVHPVIWSLTS 260

Query:   872 IEMEASLVIPVPEPLGGAIIIGQESILY 899
             +  + +  + VP+P+GG +I    S+LY
Sbjct:   261 LPFDCTQALAVPKPIGGVVIFAVNSLLY 288

 Score = 77 (32.2 bits), Expect = 2.8e-09, Sum P(5) = 2.8e-09
 Identities = 18/50 (36%), Positives = 29/50 (58%)

Query:   236 LVLSFVGHTRVLTLSGAEVEETEMGGFTSDQQTFYCGNV-DPRTVLQVTP 284
             L+LS    T +L  +G E+ E +  GF +   T + GN+ D R ++QV+P
Sbjct:   573 LILSREDSTMILQ-TGQEIMELDTSGFATQGPTVFAGNIGDNRYIVQVSP 621

 Score = 68 (29.0 bits), Expect = 2.8e-09, Sum P(5) = 2.8e-09
 Identities = 22/86 (25%), Positives = 39/86 (45%)

Query:   149 RSPDENGTY-VSVMESFTNLAPIIDMVVVD---LERQGQG------QLVTCSGGFKEGSL 198
             +S  +  TY   V +S  N+ P  +  V +   L  + Q       ++V CSG  K G+L
Sbjct:   452 QSGTQLATYSFEVCDSMLNIGPCANAAVGEPAFLSEEFQNSPEPDLEIVVCSGYGKNGAL 511

Query:   199 RIIRNGIGIEEHACIDLPGIKGIWAL 224
              +++  I  +     +LPG   +W +
Sbjct:   512 SVLQKSIRPQVVTTFELPGCYDMWTV 537

 Score = 58 (25.5 bits), Expect = 2.8e-09, Sum P(5) = 2.8e-09
 Identities = 15/51 (29%), Positives = 25/51 (49%)

Query:   103 DGTFSVKEPKVELLGEISIPECLTYLDNGVVFVGSRLGDSQLVKLNRSPDE 153
             DG  SV+    +      +   +  ++ G +F+GSRLG+S L+K      E
Sbjct:   352 DGMRSVRAFHFDKAAASVLTTSMVTMEPGYLFLGSRLGNSLLLKYTEKLQE 402

 Score = 41 (19.5 bits), Expect = 2.8e-09, Sum P(5) = 2.8e-09
 Identities = 8/27 (29%), Positives = 14/27 (51%)

Query:   528 IRTVPLGEAPRRIAYQESSQTFGVITT 554
             +R +PL      +AY   S+ + V T+
Sbjct:  1011 VRKIPLRCTAHYVAYHVESKVYAVATS 1037

 Score = 41 (19.5 bits), Expect = 9.9e-07, Sum P(4) = 9.9e-07
 Identities = 5/26 (19%), Positives = 14/26 (53%)

Query:   784 IDPEARVIGLRLYNGLFKIIPLEKDN 809
             +DP+ R   + +Y     ++P  +++
Sbjct:   143 VDPDGRCAAMLIYGTRLVVLPFRRES 168

 Score = 40 (19.1 bits), Expect = 9.9e-07, Sum P(4) = 9.9e-07
 Identities = 7/21 (33%), Positives = 16/21 (76%)

Query:   625 NFTSSTDLNLVVAKNNRIEIH 645
             NF ++++ NLVVA  +++ ++
Sbjct:    21 NFFNNSERNLVVAGTSQLYVY 41

 Score = 39 (18.8 bits), Expect = 5.3e-05, Sum P(4) = 5.3e-05
 Identities = 7/29 (24%), Positives = 15/29 (51%)

Query:     2 GSLRIIRNGIGIEEHACIDLPGIKGIWAL 30
             G+L +++  I  +     +LPG   +W +
Sbjct:   509 GALSVLQKSIRPQVVTTFELPGCYDMWTV 537


>UNIPROTKB|F1PC28 [details] [associations]
            symbol:CPSF1 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0006379 "mRNA cleavage" evidence=IEA]
            [GO:0006378 "mRNA polyadenylation" evidence=IEA] [GO:0005847 "mRNA
            cleavage and polyadenylation specificity factor complex"
            evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding" evidence=IEA]
            InterPro:IPR004871 Pfam:PF03178 GO:GO:0006378 GO:GO:0003730
            GO:GO:0005847 GO:GO:0006379 GeneTree:ENSGT00550000075040
            OMA:NIGDNRY EMBL:AAEX03008966 ProteinModelPortal:F1PC28
            Ensembl:ENSCAFT00000002514 Uniprot:F1PC28
        Length = 1398

 Score = 129 (50.5 bits), Expect = 3.7e-09, Sum P(5) = 3.7e-09
 Identities = 47/165 (28%), Positives = 80/165 (48%)

Query:  1044 YFVLGTAVVHPEENEPKQGRIIIFHY-----DDG------KLQQIAEKEIKGACYSMCEF 1092
             Y   GT ++  EE   + GRI+I        + G      K + + EKE KG   ++C  
Sbjct:  1075 YVAAGTCLMQGEEVTCR-GRILIMDVIEVVPEPGQPLTKNKFKVLYEKEQKGPVTALCHC 1133

Query:  1093 NGKLLASINSTVRLFEWT-NEKELR-LECSHFNNIIALFLKVKGDFILVGDLMRSLTLLQ 1150
             NG L+++I    ++F W+    EL  +        I   + VK +FIL  D+M+S++LL+
Sbjct:  1134 NGHLVSAIGQ--KIFLWSLRASELTGMAFIDTQLYIHQMISVK-NFILAADVMKSISLLR 1190

Query:  1151 YKTMEGSFEEISRDYNPNWMTSIEILDDELFLG---AENSYNLFI 1192
             Y+    +   +SRD  P  + S++ + D   LG   ++   NL +
Sbjct:  1191 YQEESKTLSLVSRDAKPLEVYSVDFMVDNAQLGFLVSDRDRNLMV 1235

 Score = 94 (38.1 bits), Expect = 2.1e-07, Sum P(3) = 2.1e-07
 Identities = 25/88 (28%), Positives = 43/88 (48%)

Query:   822 LEIQDVQFLHGCQNPTIICI---HQDVNGRHVKTHE------ISLK-EKEFTKTPWKQDN 871
             L I D+QFLHG   PT++ +   +Q   GR     +      ISL   ++     W   +
Sbjct:   158 LNIVDLQFLHGYYEPTLLILFEPNQTWPGRVAVRQDTCSIVAISLNITQKVHPVIWSLTS 217

Query:   872 IEMEASLVIPVPEPLGGAIIIGQESILY 899
             +  + +  + VP+P+GG ++    S+LY
Sbjct:   218 LPFDCTQALAVPKPIGGVVVFAVNSLLY 245

 Score = 77 (32.2 bits), Expect = 3.7e-09, Sum P(5) = 3.7e-09
 Identities = 18/50 (36%), Positives = 29/50 (58%)

Query:   236 LVLSFVGHTRVLTLSGAEVEETEMGGFTSDQQTFYCGNV-DPRTVLQVTP 284
             L+LS    T +L  +G E+ E +  GF +   T + GN+ D R ++QV+P
Sbjct:   530 LILSREDSTMILQ-TGQEIMELDTSGFATQGPTVFAGNIGDNRYIVQVSP 578

 Score = 66 (28.3 bits), Expect = 3.7e-09, Sum P(5) = 3.7e-09
 Identities = 14/51 (27%), Positives = 25/51 (49%)

Query:   185 QLVTCSGGFKEGSLRIIRNGIGIEEHACIDLPGIKGIWALSIGSPKNLDNT 235
             ++V CSG  K G+L +++  I  +     +LPG   +W +     K  + T
Sbjct:   455 EIVVCSGYGKNGALSVLQKSIRPQVVTTFELPGCYDMWTVIAPVRKEQEET 505

 Score = 58 (25.5 bits), Expect = 3.7e-09, Sum P(5) = 3.7e-09
 Identities = 15/51 (29%), Positives = 25/51 (49%)

Query:   103 DGTFSVKEPKVELLGEISIPECLTYLDNGVVFVGSRLGDSQLVKLNRSPDE 153
             DG  SV+    +      +   +  ++ G +F+GSRLG+S L+K      E
Sbjct:   309 DGMRSVRAFHFDKAAASVLTTSMVTMEPGYLFLGSRLGNSLLLKYTEKLQE 359

 Score = 42 (19.8 bits), Expect = 2.1e-07, Sum P(3) = 2.1e-07
 Identities = 22/120 (18%), Positives = 47/120 (39%)

Query:   695 KNNRI---EIHTVTPEGLRPVKEIFLYGKIAVMKFFRGPTDKKDLLFIITQRYNAMILEC 751
             KN+R    + H    E L  V     +G +  M   +    K+D L +  +     ++E 
Sbjct:     6 KNDRSTEGKAHREHREKLELVASFSFFGNVMSMASVQLAGAKRDALLLSFKDAKLSVVEY 65

Query:   752 RGDIDNLEILTKAHGNVSD-RIGKPSENGIIAI-IDPEARVIGLRLYNGLFKIIPLEKDN 809
                  +L+ L+  +    + R G         + +DP+ R   + +Y     ++P  +++
Sbjct:    66 DPGTHDLKTLSLHYFEEPELRDGFVQNVHTPRVRVDPDGRCAAMLIYGTRLVVLPFRRES 125

 Score = 41 (19.5 bits), Expect = 3.7e-09, Sum P(5) = 3.7e-09
 Identities = 8/27 (29%), Positives = 14/27 (51%)

Query:   528 IRTVPLGEAPRRIAYQESSQTFGVITT 554
             +R +PL      +AY   S+ + V T+
Sbjct:   968 VRKIPLRCTAHYVAYHVESKVYAVATS 994

 Score = 40 (19.1 bits), Expect = 3.8e-05, Sum P(4) = 3.8e-05
 Identities = 9/40 (22%), Positives = 18/40 (45%)

Query:     2 GSLRIIRNGIGIEEHACIDLPGIKGIWALSIGSPKNLDNT 41
             G+L +++  I  +     +LPG   +W +     K  + T
Sbjct:   466 GALSVLQKSIRPQVVTTFELPGCYDMWTVIAPVRKEQEET 505

 Score = 37 (18.1 bits), Expect = 8.8e-09, Sum P(5) = 8.8e-09
 Identities = 6/18 (33%), Positives = 11/18 (61%)

Query:   830 LHGCQNPTIICIHQDVNG 847
             LH       +C+++DV+G
Sbjct:   644 LHHQSKVITLCVYRDVSG 661


>POMBASE|SPCC11E10.08 [details] [associations]
            symbol:rik1 "silencing protein Rik1" species:4896
            "Schizosaccharomyces pombe" [GO:0000790 "nuclear chromatin"
            evidence=TAS] [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
            "nucleus" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IEA]
            [GO:0006348 "chromatin silencing at telomere" evidence=TAS]
            [GO:0007535 "donor selection" evidence=IMP] [GO:0030466 "chromatin
            silencing at silent mating-type cassette" evidence=IMP] [GO:0030702
            "chromatin silencing at centromere" evidence=IMP] [GO:0030989
            "dynein-driven meiotic oscillatory nuclear movement" evidence=IGI]
            [GO:0034613 "cellular protein localization" evidence=IMP]
            [GO:0035391 "maintenance of chromatin silencing at silent
            mating-type cassette" evidence=NAS] [GO:0043234 "protein complex"
            evidence=EXP] [GO:0043494 "CLRC ubiquitin ligase complex"
            evidence=IDA] [GO:0044732 "mitotic spindle pole body" evidence=IDA]
            [GO:0045141 "meiotic telomere clustering" evidence=IMP] [GO:0051572
            "negative regulation of histone H3-K4 methylation" evidence=IMP]
            [GO:0051574 "positive regulation of histone H3-K9 methylation"
            evidence=IMP] [GO:0000723 "telomere maintenance" evidence=IMP]
            InterPro:IPR004871 Pfam:PF03178 PomBase:SPCC11E10.08 GO:GO:0005737
            GO:GO:0034613 EMBL:CU329672 GenomeReviews:CU329672_GR GO:GO:0044732
            GO:GO:0003677 GO:GO:0006351 GO:GO:0016568 GO:GO:0000790
            GO:GO:0030702 GO:GO:0006348 GO:GO:0030989 GO:GO:0051572
            GO:GO:0045141 GO:GO:0051574 GO:GO:0007535 GO:GO:0035391
            GO:GO:0043494 EMBL:AF136156 PIR:T40859 RefSeq:NP_588204.1
            DIP:DIP-35634N IntAct:Q10426 STRING:Q10426
            EnsemblFungi:SPCC11E10.08.1 GeneID:2539050 KEGG:spo:SPCC11E10.08
            eggNOG:NOG255855 OrthoDB:EOG4Q887H NextBio:20800224 Uniprot:Q10426
        Length = 1040

 Score = 99 (39.9 bits), Expect = 1.3e-08, Sum P(3) = 1.3e-08
 Identities = 47/208 (22%), Positives = 82/208 (39%)

Query:   339 QLAHRALEYEVACLDISPLSNEETSSEPAKAQLAAVGLWTDISARLLSLPSLEEV-CKEP 397
             ++A +  E E++CLD S           A+ Q+  VG W+     +L+      + C   
Sbjct:   498 EVARKVFESEISCLDFS-----------AQFQIG-VGFWSK-QVMILTFSDNSSISCAFQ 544

Query:   398 LGGEIIPRSILMTCFE-GHCYLLVALGDGSMFYFSLDPASGRLTDKKKVTLGTQPTVLKT 456
                  +PR+I++         LLV+ G G    + L      L   +    GT P   + 
Sbjct:   545 TNVPSLPRNIILEGVGVDRNLLLVSSGSGEFKSYVL--FKNNLVFSETKHFGTTPVSFRR 602

Query:   457 FRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLRQVNHMCSLNAESYPDSLALATDSTFT 516
             F     T +   +D P ++Y  N  L +  +++ Q   +C     S  D L   +     
Sbjct:   603 FTMNIGTYIICNNDCPHMVYGFNGALCYMPLSMPQSYDVCQFRDNSGKDFLISVSLGGLK 662

Query:   517 FGTIDEIQKLHIRTVPLGEAP-RRIAYQ 543
             F  ++ + +L  R V L   P + I +Q
Sbjct:   663 FLQLNPLPELTPRKVLLEHVPLQAIIFQ 690

 Score = 92 (37.4 bits), Expect = 1.3e-08, Sum P(3) = 1.3e-08
 Identities = 32/172 (18%), Positives = 79/172 (45%)

Query:  1046 VLGTAVVHPEENEPKQGRIIIFHYDDG--KLQQIAEKEIKGACYSMCEFNGKLLASINST 1103
             ++GT+++  ++  P  GR+I+  ++     L+ ++   +  A   +  +N + + +    
Sbjct:   748 LVGTSIIEQDKLVPVNGRLILLEFEKELQSLKVVSSMVLSAAVIDLGVYNDRYIVAFGQQ 807

Query:  1104 VRLFEWTNEKELRLECSHFNNIIALFLKVKGDFILVGDLMRSLTLLQYKTMEGSFEEISR 1163
             V + + T E+ L ++       I L L V+G+ I + D +   T++ +   +  F  ++R
Sbjct:   808 VAIVKLTEER-LMIDSRISLGSIVLQLIVEGNEIAIADSIGRFTIMYFDGQK--FIVVAR 864

Query:  1164 DYNPNWMTSIEILDDELFLGAENSYNLFICQKDSAATSDEDRTHLQEVGTVH 1215
                   +    + +  +++ A NS  L + + +  A +  DR   + V  +H
Sbjct:   865 YLFGENIVKAALYEGTVYIIATNSGLLKLLRYNKDAKNFNDRFICESVYHLH 916

 Score = 83 (34.3 bits), Expect = 1.3e-08, Sum P(3) = 1.3e-08
 Identities = 38/177 (21%), Positives = 79/177 (44%)

Query:   125 LTYLDNGVVFVGSRLGDSQLVKLNRSPDENGTYVSVMESFTNLAPIIDMVVV--DLERQG 182
             L  +  G++F+GS+  +S+L+ L+   D        ++S  NL PI D++V+  D+E+  
Sbjct:   308 LNSIHEGLLFIGSKNSESKLINLSTLKD--------VDSIPNLGPIHDLLVLKNDIEKS- 358

Query:   183 QGQLVTCSGGFKEGSLRIIRNGIGIEEHACIDLPGIKGIWALSIGSPKNLDNTLVLSFVG 242
                 + C+G  +  SL   ++ + ++      + GI     L    P   ++ L L F  
Sbjct:   359 ---FLVCAGTPRNASLIYFQHALKLDILGQTKISGILRAMVL----PSYPEHKLFLGFPS 411

Query:   243 HTRVLTLSGAEVEETEMG-GFTSDQQTFYCGNVDPRTVLQVTPSAAILISTESKARV 298
              T    +   E  + E+    ++ ++T      +   V QVT +   +  +  ++R+
Sbjct:   412 ETVAFNIK--EDFQLELDPSLSTKERTIALSGTNGEFV-QVTSTFLCIYDSAKRSRL 465

 Score = 45 (20.9 bits), Expect = 0.00059, Sum P(3) = 0.00059
 Identities = 14/49 (28%), Positives = 25/49 (51%)

Query:   892 IGQESILYHSGKSYVAVAPQIIKSSTIVCYAKVDANGERYLLGDLAGRL 940
             IG+ +I+Y  G+ ++ VA  +     IV  A  +  G  Y++   +G L
Sbjct:   846 IGRFTIMYFDGQKFIVVARYLF-GENIVKAALYE--GTVYIIATNSGLL 891

 Score = 37 (18.1 bits), Expect = 0.00047, Sum P(3) = 0.00047
 Identities = 6/20 (30%), Positives = 10/20 (50%)

Query:   301 WEPPNGKSISVVSCNKNQVL 320
             W P  G+ +  + C+ N  L
Sbjct:   258 WTPLKGQKMHYIVCDTNGYL 277


>DICTYBASE|DDB_G0281585 [details] [associations]
            symbol:cpsf1 "cleavage and polyadenylation
            specificity factor 160 kDa subunit" species:44689 "Dictyostelium
            discoideum" [GO:0005634 "nucleus" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] [GO:0006379 "mRNA cleavage"
            evidence=ISS] [GO:0006378 "mRNA polyadenylation" evidence=ISS]
            [GO:0005847 "mRNA cleavage and polyadenylation specificity factor
            complex" evidence=ISS] [GO:0003730 "mRNA 3'-UTR binding"
            evidence=ISS] InterPro:IPR004871 Pfam:PF03178
            dictyBase:DDB_G0281585 GenomeReviews:CM000152_GR GO:GO:0006378
            EMBL:AAFI02000042 GO:GO:0003730 eggNOG:COG5161 KO:K14401
            GO:GO:0005847 GO:GO:0006379 RefSeq:XP_640515.1
            EnsemblProtists:DDB0233702 GeneID:8623125 KEGG:ddi:DDB_G0281585
            InParanoid:Q54TS6 OMA:TSATIQD Uniprot:Q54TS6
        Length = 1628

 Score = 109 (43.4 bits), Expect = 1.4e-08, Sum P(6) = 1.4e-08
 Identities = 43/165 (26%), Positives = 81/165 (49%)

Query:  1029 ALSLISSKFGE-DPNT----YFVLGTAVVHPEENEPKQGRIIIF----H---YD-----D 1071
             A+ ++S KF E D  T    + V+GTA    E+ + K GR+++F    H   ++     +
Sbjct:  1299 AMKIVSLKFTEPDGITRARPFLVIGTAFTFGEDTQCK-GRVLVFEIVSHKTQFESEELGE 1357

Query:  1072 GKLQQIAEKEIKGACYSMCEFNGKLLASINSTVRLFEWTNEKELRLECSHFNNIIALFLK 1131
              +L  + EKE KG   ++   NG LL +I   + + ++     + L        I     
Sbjct:  1358 KRLNLLYEKEQKGPVTALSSVNGLLLMTIGPKLTVNQFYTGSLVTLSFYDAQIYICSICT 1417

Query:  1132 VKGDFILVGDLMRSLTLLQYKTMEGSFEEISRDYNPNWMTSIEIL 1176
             +K ++I++GD+ +S+  LQ+K  + +   +S+DY    + S E +
Sbjct:  1418 IK-NYIVIGDMYKSVYFLQWKDNK-TLNLLSKDYQALNIFSTEFI 1460

 Score = 105 (42.0 bits), Expect = 8.8e-08, Sum P(5) = 8.8e-08
 Identities = 36/125 (28%), Positives = 61/125 (48%)

Query:   808 DNFELKASSIRMEELEIQDVQFLHGCQNPTIICIHQDVN---GR-HVK--THEIS-LKEK 860
             +N + +  +I +E   ++D  FLHG   PTI+ +H+ +     R  VK  T +++ +   
Sbjct:   274 NNQDKEKKNIEIEN--VKDFCFLHGYYEPTILFLHEPIQTWTSRIAVKKFTCQMTAISLN 331

Query:   861 EFTKTP---WKQDNIEMEASLVIPVPEPLGGAIIIGQESILYHSGKSYVAVAPQ---IIK 914
               TK     W   N      +++ VPEPLGGA++I    + Y +  S   +A      I 
Sbjct:   332 LLTKAGSFIWNVSNFPYNCEMLVSVPEPLGGALVITANIMFYVNQTSRYGLAVNEYASID 391

Query:   915 SSTIV 919
             +STI+
Sbjct:   392 TSTII 396

 Score = 89 (36.4 bits), Expect = 1.4e-08, Sum P(6) = 1.4e-08
 Identities = 17/40 (42%), Positives = 25/40 (62%)

Query:   185 QLVTCSGGFKEGSLRIIRNGIGIEEHACIDLPGIKGIWAL 224
             +LVTCSG  K GS+ +++N I  E     +LPGI  +W +
Sbjct:   618 ELVTCSGYGKNGSISVLQNNIKPELVMAFELPGILNVWTV 657

 Score = 78 (32.5 bits), Expect = 1.4e-08, Sum P(6) = 1.4e-08
 Identities = 18/44 (40%), Positives = 26/44 (59%)

Query:   103 DGTFSVKEPKVELLGEISIPECLTYLDNGVVFVGSRLGDSQLVK 146
             DG  SV+   V   G   +  C+  L N ++F+GSRLGDS L++
Sbjct:   445 DGR-SVQRIHVSKAGGSVLTSCICVLSNNLIFLGSRLGDSLLLQ 487

 Score = 58 (25.5 bits), Expect = 8.8e-08, Sum P(5) = 8.8e-08
 Identities = 25/107 (23%), Positives = 45/107 (42%)

Query:   709 LRPVKEIF----LYGKIAVMKFFRGPTDKKDLLFIITQRYNAMILECRGDIDNLEILTKA 764
             L+P  E+     L+G I  M   R P  ++D L +  +     +L+   D+ + EI +  
Sbjct:    83 LKPSLELIIEKKLFGNIESMASVRYPNSERDSLILTFRDAKISVLDYDSDLLDFEIRS-L 141

Query:   765 HGNVSDRIGKPSENGI----IAIIDPEARVIGLRLYNGLFKIIPLEK 807
             H    D   K   N      +  +D + R   + LY+    ++P +K
Sbjct:   142 HYFEKDEF-KGGRNHFKHPPLLKVDTQQRCAVMLLYDRNLAVLPFKK 187

 Score = 51 (23.0 bits), Expect = 1.4e-08, Sum P(6) = 1.4e-08
 Identities = 24/69 (34%), Positives = 32/69 (46%)

Query:   415 HCYLLVALGDGSMFYFSLDPASGRLTDKKKVTLGTQPTVLKTFRSLSTTNVFACSDRPTV 474
             H YL ++L DG+   F     +GR  D K+V  G        F+SL   N+F    R  V
Sbjct:   716 HDYLYLSLKDGTTLIFE----TGR--DLKEV--GKF-----NFKSLDIGNLFG-RKRIVV 761

Query:   475 IYSSNHKLV 483
             IY    KL+
Sbjct:   762 IYQGGIKLI 770

 Score = 50 (22.7 bits), Expect = 8.8e-08, Sum P(5) = 8.8e-08
 Identities = 9/40 (22%), Positives = 21/40 (52%)

Query:   619 QNTFERNFTSSTDLNLVVAKNNRIEIHTVTPEGLRPVKEI 658
             +   + N  +   +NLV+AK N ++I+ +  E +   + +
Sbjct:    18 EQCIKANLINDDSINLVLAKTNVLQIYKIRYEKIEKYENV 57

 Score = 44 (20.5 bits), Expect = 1.4e-08, Sum P(6) = 1.4e-08
 Identities = 14/57 (24%), Positives = 29/57 (50%)

Query:   516 TFGTIDEIQK-LHIRTVPLGEAPRRIAYQESSQTFGVITT--RI--DIQEADGSTPV 567
             T  T+   +  + IR +P   +  +IAY   ++ + VI +  ++  ++QE D   P+
Sbjct:  1209 TLSTLMNFENDIAIRRIPTKNSCHKIAYHSEAKCYVVIVSFPQVTQELQE-DSKKPI 1264

 Score = 44 (20.5 bits), Expect = 3.3e-07, Sum P(5) = 3.3e-07
 Identities = 8/27 (29%), Positives = 17/27 (62%)

Query:   689 LNLVVAKNNRIEIHTVTPEGLRPVKEI 715
             +NLV+AK N ++I+ +  E +   + +
Sbjct:    31 INLVLAKTNVLQIYKIRYEKIEKYENV 57

 Score = 40 (19.1 bits), Expect = 1.4e-08, Sum P(6) = 1.4e-08
 Identities = 14/39 (35%), Positives = 19/39 (48%)

Query:     8 RNGIGIEEHACIDLPGIKGIWALSIGSPKNLDNTLVLSF 46
             R G+ + E+A ID   I G        P  +D+TL L F
Sbjct:   379 RYGLAVNEYASIDTSTIIGSQPFDF--P--IDDTLNLVF 413

 Score = 40 (19.1 bits), Expect = 2.2e-05, Sum P(4) = 2.2e-05
 Identities = 14/39 (35%), Positives = 20/39 (51%)

Query:   652 LRPVKEIF----LYGKIAVMKFFRGPTDKKDLLFIITQR 686
             L+P  E+     L+G I  M   R P  ++D L I+T R
Sbjct:    83 LKPSLELIIEKKLFGNIESMASVRYPNSERDSL-ILTFR 120

 Score = 39 (18.8 bits), Expect = 8.8e-08, Sum P(5) = 8.8e-08
 Identities = 8/34 (23%), Positives = 18/34 (52%)

Query:   987 TKQSTANQPADFNMEVEVHNLLIIDQNTFEILHA 1020
             T     +QP DF ++  ++ +  +D++ F  L +
Sbjct:   392 TSTIIGSQPFDFPIDDTLNLVFTLDRSNFVFLES 425

 Score = 38 (18.4 bits), Expect = 5.0e-08, Sum P(6) = 5.0e-08
 Identities = 9/26 (34%), Positives = 16/26 (61%)

Query:   792 GLRLYNGLFKIIPLEKDNFELKASSI 817
             G++L NG  ++I   + N  +K+S I
Sbjct:   766 GIKLINGFDRVIQEIQINEPIKSSYI 791


>UNIPROTKB|F1RSN8 [details] [associations]
            symbol:CPSF1 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0006379 "mRNA cleavage" evidence=IEA] [GO:0006378 "mRNA
            polyadenylation" evidence=IEA] [GO:0005847 "mRNA cleavage and
            polyadenylation specificity factor complex" evidence=IEA]
            [GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] InterPro:IPR004871
            Pfam:PF03178 GO:GO:0006378 GO:GO:0003730 GO:GO:0005847
            GO:GO:0006379 GeneTree:ENSGT00550000075040 OMA:NIGDNRY
            EMBL:CU468594 Ensembl:ENSSSCT00000006486 Uniprot:F1RSN8
        Length = 1108

 Score = 129 (50.5 bits), Expect = 7.1e-08, Sum P(5) = 7.1e-08
 Identities = 47/165 (28%), Positives = 80/165 (48%)

Query:  1044 YFVLGTAVVHPEENEPKQGRIIIFHY-----DDG------KLQQIAEKEIKGACYSMCEF 1092
             Y   GT ++  EE   + GRI+I        + G      K + + EKE KG   ++C  
Sbjct:   785 YVAAGTCLMQGEEVTCR-GRILIMDVIEVVPEPGQPLTKNKFKVLYEKEQKGPVTALCHC 843

Query:  1093 NGKLLASINSTVRLFEWT-NEKELR-LECSHFNNIIALFLKVKGDFILVGDLMRSLTLLQ 1150
             NG L+++I    ++F W+    EL  +        I   + VK +FIL  D+M+S++LL+
Sbjct:   844 NGHLVSAIGQ--KIFLWSLRASELTGMAFIDTQLYIHQMISVK-NFILAADVMKSISLLR 900

Query:  1151 YKTMEGSFEEISRDYNPNWMTSIEILDDELFLG---AENSYNLFI 1192
             Y+    +   +SRD  P  + S++ + D   LG   ++   NL +
Sbjct:   901 YQEESKTLSLVSRDAKPLEVYSVDFMVDNAQLGFLVSDRDRNLMV 945

 Score = 95 (38.5 bits), Expect = 7.1e-08, Sum P(5) = 7.1e-08
 Identities = 26/88 (29%), Positives = 43/88 (48%)

Query:   822 LEIQDVQFLHGCQNPTIICI---HQDVNGRHVKTHE------ISLK-EKEFTKTPWKQDN 871
             L I D+QFLHG   PT++ +   +Q   GR     +      ISL   ++     W   +
Sbjct:   203 LNIVDLQFLHGYYEPTLLILFEPNQTWPGRVAVRQDTCSIVAISLNITQKVHPVIWSLTS 262

Query:   872 IEMEASLVIPVPEPLGGAIIIGQESILY 899
             +  + +  + VP+P+GG +I    S+LY
Sbjct:   263 LPFDCTQALAVPKPIGGVVIFAVNSLLY 290

 Score = 48 (22.0 bits), Expect = 7.1e-08, Sum P(5) = 7.1e-08
 Identities = 9/32 (28%), Positives = 20/32 (62%)

Query:   625 NFTSSTDLNLVVAKNNRIEIHTVTPEGLRPVK 656
             NF ++++ NLVVA  +++ ++ +  +   P K
Sbjct:    21 NFFNNSERNLVVAGTSQLYVYRLNRDAEAPTK 52

 Score = 41 (19.5 bits), Expect = 7.1e-08, Sum P(5) = 7.1e-08
 Identities = 5/26 (19%), Positives = 14/26 (53%)

Query:   784 IDPEARVIGLRLYNGLFKIIPLEKDN 809
             +DP+ R   + +Y     ++P  +++
Sbjct:   145 VDPDGRCAAMLIYGTRLVVLPFRRES 170

 Score = 39 (18.8 bits), Expect = 7.1e-08, Sum P(5) = 7.1e-08
 Identities = 19/67 (28%), Positives = 28/67 (41%)

Query:   952 DGTFSVKEPKVELLGEHCKGPVVEMSSLSYIKPGSTKQSTANQ-PADFNMEVEVHNLLII 1010
             +G  S   P V+   E   G    + S S  +   + Q  A++ PA F  E     LL+ 
Sbjct:   395 EGQGSETSPTVDDEEEMLYGDSGSLFSPSKEEARRSSQPPADRDPAPFRAEPTHWCLLVR 454

Query:  1011 DQNTFEI 1017
             +  T EI
Sbjct:   455 ENGTMEI 461

 Score = 39 (18.8 bits), Expect = 5.1e-07, Sum P(5) = 5.1e-07
 Identities = 12/50 (24%), Positives = 24/50 (48%)

Query:   665 AVMKFFRGPTDKKDLLFI-ITQRTDLNLVVAKNNRIEIHTVTPEGLRPVK 713
             AV K    PT  +  ++      ++ NLVVA  +++ ++ +  +   P K
Sbjct:     3 AVYKQAHPPTGLEFSMYCNFFNNSERNLVVAGTSQLYVYRLNRDAEAPTK 52


>FB|FBgn0024698 [details] [associations]
            symbol:Cpsf160 "Cleavage and polyadenylation specificity
            factor 160" species:7227 "Drosophila melanogaster" [GO:0005847
            "mRNA cleavage and polyadenylation specificity factor complex"
            evidence=ISS;NAS] [GO:0006378 "mRNA polyadenylation"
            evidence=ISS;NAS] [GO:0006379 "mRNA cleavage" evidence=ISS;NAS]
            [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS] [GO:0003729 "mRNA
            binding" evidence=NAS] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0022008 "neurogenesis" evidence=IMP] InterPro:IPR004871
            Pfam:PF03178 EMBL:AE013599 GO:GO:0022008 GO:GO:0006378
            GO:GO:0003723 eggNOG:COG5161 KO:K14401 GO:GO:0005847 GO:GO:0006379
            GeneTree:ENSGT00550000075040 OMA:NIGDNRY EMBL:AF241364
            EMBL:AF241365 EMBL:AF241366 EMBL:AY051896 RefSeq:NP_725397.1
            RefSeq:NP_995833.1 UniGene:Dm.3414 ProteinModelPortal:Q9V726
            STRING:Q9V726 PaxDb:Q9V726 PRIDE:Q9V726 EnsemblMetazoa:FBtr0089258
            GeneID:44250 KEGG:dme:Dmel_CG10110 CTD:44250 FlyBase:FBgn0024698
            InParanoid:Q9V726 OrthoDB:EOG4ZCRK8 PhylomeDB:Q9V726
            GenomeRNAi:44250 NextBio:837008 Bgee:Q9V726 GermOnline:CG10110
            Uniprot:Q9V726
        Length = 1455

 Score = 105 (42.0 bits), Expect = 3.3e-07, Sum P(4) = 3.3e-07
 Identities = 33/105 (31%), Positives = 51/105 (48%)

Query:   185 QLVTCSGGFKEGSLRIIRNGIGIEEHACIDLPGIKGIW-----ALSIGSPKNLDNTLVLS 239
             +LV  +G  K G+L +  N I  +     +L G   +W     A    S  +  + ++LS
Sbjct:   527 ELVAATGHSKNGALSVFVNCINPQIITSFELDGCLDVWTVFDDATKKSSRNDQHDFMLLS 586

Query:   240 FVGHTRVLTLSGAEVEETEMGGFTSDQQTFYCGNV-DPRTVLQVT 283
                 T VL  +G E+ E E  GFT +Q T + GN+   R ++QVT
Sbjct:   587 QRNSTLVLQ-TGQEINEIENTGFTVNQPTIFVGNLGQQRFIVQVT 630

 Score = 96 (38.9 bits), Expect = 3.3e-07, Sum P(4) = 3.3e-07
 Identities = 26/111 (23%), Positives = 56/111 (50%)

Query:  1073 KLQQIAEKEIKGACYSMCEFNGKLLASINSTVRLFEWTNEKELRLECSHFNNIIALFLKV 1132
             K+++I +KE KG   ++ +  G L+  +   + +++  +   + +     N  +   + V
Sbjct:  1172 KIKEIFKKEQKGPVSAISDVLGFLVTGLGQKIYIWQLRDGDLIGVAFIDTNIYVHQIITV 1231

Query:  1133 KGDFILVGDLMRSLTLLQYKTMEGSFEEISRDYNPNWMTSIEILDDELFLG 1183
             K   I + D+ +S++LL+++    +    SRD+NP  +  IE + D   LG
Sbjct:  1232 KS-LIFIADVYKSISLLRFQEEYRTLSLASRDFNPLEVYGIEFMVDNSNLG 1281

 Score = 93 (37.8 bits), Expect = 3.3e-06, Sum P(4) = 3.3e-06
 Identities = 23/92 (25%), Positives = 49/92 (53%)

Query:   820 EELE-IQDVQFLHGCQNPTIICIHQDVN---GRHVKTHE-------ISLK-EKEFTKTPW 867
             E+++ + D+QFLHG   PT++ +++ V    GR +K          ISL  ++      W
Sbjct:   209 EKIDNVLDIQFLHGYYEPTLLILYEPVRTCPGR-IKVRSDTCVLVAISLNIQQRVHPIIW 267

Query:   868 KQDNIEMEASLVIPVPEPLGGAIIIGQESILY 899
               +++  +   V P+ +P+GG +++   +++Y
Sbjct:   268 TVNSLPFDCLQVYPIQKPIGGCLVMTVNAVIY 299

 Score = 59 (25.8 bits), Expect = 3.3e-07, Sum P(4) = 3.3e-07
 Identities = 13/42 (30%), Positives = 26/42 (61%)

Query:   121 IPECLTYLDNGVVFVGSRLGDSQLVKLNRSPDENGTYVSVME 162
             +  C+  L +  +F+GSRLG+S L  L+ + ++  T +++ E
Sbjct:   381 LTSCICVLHSEYIFLGSRLGNSLL--LHFTEEDQSTVITLDE 420

 Score = 59 (25.8 bits), Expect = 3.3e-06, Sum P(4) = 3.3e-06
 Identities = 25/114 (21%), Positives = 49/114 (42%)

Query:   717 LYGKIAVMKFFRGPTDKKDLLFIITQRYNAMILECRGDIDNLEILTKAHGNVSD-RIGKP 775
             LYG +  ++        +D L I  +     +L+   D   L+ L+  +    D R G  
Sbjct:    76 LYGNVMSLQCVSLAGAMRDALLISFKDAKLSVLQHDPDTFALKTLSLHYFEEDDIRGGWT 135

Query:   776 SENGIIAI-IDPEARVIGLRLYNGLFKIIPLEKDNFELKASSIRMEELEIQDVQ 828
                 +  + +DP++R   + +Y     ++P  KDN         ++E+E+ DV+
Sbjct:   136 GRYFVPTVRVDPDSRCAVMLVYGKRLVVLPFRKDN--------SLDEIELADVK 181

 Score = 52 (23.4 bits), Expect = 3.3e-06, Sum P(4) = 3.3e-06
 Identities = 13/45 (28%), Positives = 26/45 (57%)

Query:   605 FNMEVEVHNLLIIDQNTFERNFTSSTDLNLVVAKNNRIEIHTVTP 649
             F+M  + H+   ++ +   R F ++ D NLVVA  N ++++ + P
Sbjct:     2 FSMCKQTHSATAVEFSIACR-FFNNLDENLVVAGANVLKVYRIAP 45

 Score = 50 (22.7 bits), Expect = 3.3e-07, Sum P(4) = 3.3e-07
 Identities = 9/26 (34%), Positives = 16/26 (61%)

Query:   528 IRTVPLGEAPRRIAYQESSQTFGVIT 553
             +R VPL   PR++ Y   ++ + +IT
Sbjct:  1026 VRKVPLRCTPRQLVYHRENRVYCLIT 1051

 Score = 42 (19.8 bits), Expect = 0.00069, Sum P(3) = 0.00069
 Identities = 16/64 (25%), Positives = 28/64 (43%)

Query:   688 DLNLVVAKNNRIEIHTVTPEGLRPVKEIFLYGKIAVMKFFRGPTDKKDLLFIITQRYNAM 747
             D NLVVA  N ++++ + P      ++     K+   +    P  + + L   T   N M
Sbjct:    27 DENLVVAGANVLKVYRIAPNVEASQRQ-----KLNPSEMRLAPKMRLECLATYTLYGNVM 81

Query:   748 ILEC 751
              L+C
Sbjct:    82 SLQC 85


>UNIPROTKB|F1S419 [details] [associations]
            symbol:LOC100512659 "Uncharacterized protein" species:9823
            "Sus scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] InterPro:IPR004871
            Pfam:PF03178 GO:GO:0005634 GO:GO:0003676
            GeneTree:ENSGT00530000063396 EMBL:CU915803 EMBL:AEMK01191757
            Ensembl:ENSSSCT00000003019 OMA:SHEVIYS Uniprot:F1S419
        Length = 319

 Score = 137 (53.3 bits), Expect = 8.9e-06, P = 8.9e-06
 Identities = 49/206 (23%), Positives = 96/206 (46%)

Query:  1010 IDQNTFEILHAHQLFPGEYALSLISSKFGEDPNTYFVL-GTA---VVHPEENEPKQGRII 1065
             I  NT +++   QL   E A S+   +F    + ++VL G A   +++P       G + 
Sbjct:    50 IQGNTLDLV---QLEQNEAAFSVAVCRFSNTGDDWYVLVGVAKDLILNPRS--VAGGFVY 104

Query:  1066 IFHY-DDG-KLQQIAEKEIKGACYSMCEFNGKLLASINSTVRLFEWTNEKELR-LECSHF 1122
              +   ++G KL+ + +  ++    ++  F G++L  +   +R+++   +K LR  E  H 
Sbjct:   105 TYKLVNNGEKLEFLHKTPVEEVPAAIAPFQGRVLIGVGKLLRVYDLGKKKLLRKCENKHI 164

Query:  1123 NNIIALFLKVKGDFILVGDLMRSLTLLQYKTMEGSFEEISRDYNPNWMTSIEILDDELFL 1182
              N I+  ++  G  ++V D+  S   ++YK  E      + D  P W+T+  +LD +   
Sbjct:   165 ANYIS-GIQTIGHRVIVSDVQESFIWVRYKRNENQLIIFADDTYPRWVTTASLLDYDTVA 223

Query:  1183 GAENSYNLFICQKDSAATS--DEDRT 1206
             GA+   N+ + +         DED T
Sbjct:   224 GADKFGNICVVRLPPNTNDEVDEDPT 249


>WB|WBGene00022301 [details] [associations]
            symbol:cpsf-1 species:6239 "Caenorhabditis elegans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0009792 "embryo development ending in
            birth or egg hatching" evidence=IMP] [GO:0000003 "reproduction"
            evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
            "nematode larval development" evidence=IMP] [GO:0040018 "positive
            regulation of multicellular organism growth" evidence=IMP]
            [GO:0010171 "body morphogenesis" evidence=IMP] [GO:0040027
            "negative regulation of vulval development" evidence=IMP]
            InterPro:IPR004871 Pfam:PF03178 GO:GO:0009792 GO:GO:0040007
            GO:GO:0002119 GO:GO:0006378 GO:GO:0010171 GO:GO:0040018
            GO:GO:0000003 GO:GO:0003723 GO:GO:0040027 eggNOG:COG5161 KO:K14401
            GO:GO:0005847 GO:GO:0006379 GeneTree:ENSGT00550000075040
            OMA:NIGDNRY HOGENOM:HOG000007904 EMBL:FO081666 RefSeq:NP_500157.2
            ProteinModelPortal:Q9N4C2 MINT:MINT-3384281 STRING:Q9N4C2
            PaxDb:Q9N4C2 EnsemblMetazoa:Y76B12C.7.1 EnsemblMetazoa:Y76B12C.7.2
            GeneID:177003 KEGG:cel:CELE_Y76B12C.7 CTD:177003 WormBase:Y76B12C.7
            InParanoid:Q9N4C2 NextBio:894932 Uniprot:Q9N4C2
        Length = 1454

 Score = 136 (52.9 bits), Expect = 9.8e-06, Sum P(2) = 9.8e-06
 Identities = 31/131 (23%), Positives = 69/131 (52%)

Query:   785 DPEARVIGLRLYNGLFKIIPLEKDNFELKASSIRMEELE-----IQDVQFLHGCQNPTII 839
             DP  R     +Y     I+P  +++  + +  I +++++     I D+ FL G   PTI+
Sbjct:   145 DPSNRCAACLVYGKHIAILPFHENSKRIHSYVIPLKQIDPRLDNIADMVFLDGYYEPTIL 204

Query:   840 CIHQDVN---GRHVKTHE--------ISLKEKEFTKTPWKQDNIEMEASLVIPVPEPLGG 888
              +++ +    GR    ++        +++ +++F    W+  N+ M+ S ++P+P+PLGG
Sbjct:   205 FLYEPIQTTPGRACVRYDTMCIMGVSVNIVDRQFAVV-WQTANLPMDCSQLLPIPKPLGG 263

Query:   889 AIIIGQESILY 899
             A++ G  +++Y
Sbjct:   264 ALVFGSNTVVY 274

 Score = 64 (27.6 bits), Expect = 9.8e-06, Sum P(2) = 9.8e-06
 Identities = 22/113 (19%), Positives = 49/113 (43%)

Query:  1052 VHPEENEPKQGRIIIFHYDDGKLQQIAEKEIKGACYSMCEFNGKLLASINSTVRLFEWTN 1111
             V PE ++P   R         K++ + +KE KG    +C  NG LL  +   V ++++ +
Sbjct:  1153 VVPEPDQPTSNR---------KIKVLFDKEQKGPVTGLCAINGLLLCGMGQKVFIWQFKD 1203

Query:  1112 EKELRLECSHFNNIIALFLKVKGDFILVGDLMRSLTLLQYKTMEGSFEEISRD 1164
                + +     +  +     ++    +  D   S++L++++    +    SRD
Sbjct:  1204 NDLMGISFLDMHYYVYQLHSLR-TIAIACDARESMSLIRFQEDNKAMSIASRD 1255


>UNIPROTKB|Q9N4C2 [details] [associations]
            symbol:cpsf-1 "Probable cleavage and polyadenylation
            specificity factor subunit 1" species:6239 "Caenorhabditis elegans"
            [GO:0006378 "mRNA polyadenylation" evidence=NAS] [GO:0006379 "mRNA
            cleavage" evidence=NAS] [GO:0005847 "mRNA cleavage and
            polyadenylation specificity factor complex" evidence=NAS]
            InterPro:IPR004871 Pfam:PF03178 GO:GO:0009792 GO:GO:0040007
            GO:GO:0002119 GO:GO:0006378 GO:GO:0010171 GO:GO:0040018
            GO:GO:0000003 GO:GO:0003723 GO:GO:0040027 eggNOG:COG5161 KO:K14401
            GO:GO:0005847 GO:GO:0006379 GeneTree:ENSGT00550000075040
            OMA:NIGDNRY HOGENOM:HOG000007904 EMBL:FO081666 RefSeq:NP_500157.2
            ProteinModelPortal:Q9N4C2 MINT:MINT-3384281 STRING:Q9N4C2
            PaxDb:Q9N4C2 EnsemblMetazoa:Y76B12C.7.1 EnsemblMetazoa:Y76B12C.7.2
            GeneID:177003 KEGG:cel:CELE_Y76B12C.7 CTD:177003 WormBase:Y76B12C.7
            InParanoid:Q9N4C2 NextBio:894932 Uniprot:Q9N4C2
        Length = 1454

 Score = 136 (52.9 bits), Expect = 9.8e-06, Sum P(2) = 9.8e-06
 Identities = 31/131 (23%), Positives = 69/131 (52%)

Query:   785 DPEARVIGLRLYNGLFKIIPLEKDNFELKASSIRMEELE-----IQDVQFLHGCQNPTII 839
             DP  R     +Y     I+P  +++  + +  I +++++     I D+ FL G   PTI+
Sbjct:   145 DPSNRCAACLVYGKHIAILPFHENSKRIHSYVIPLKQIDPRLDNIADMVFLDGYYEPTIL 204

Query:   840 CIHQDVN---GRHVKTHE--------ISLKEKEFTKTPWKQDNIEMEASLVIPVPEPLGG 888
              +++ +    GR    ++        +++ +++F    W+  N+ M+ S ++P+P+PLGG
Sbjct:   205 FLYEPIQTTPGRACVRYDTMCIMGVSVNIVDRQFAVV-WQTANLPMDCSQLLPIPKPLGG 263

Query:   889 AIIIGQESILY 899
             A++ G  +++Y
Sbjct:   264 ALVFGSNTVVY 274

 Score = 64 (27.6 bits), Expect = 9.8e-06, Sum P(2) = 9.8e-06
 Identities = 22/113 (19%), Positives = 49/113 (43%)

Query:  1052 VHPEENEPKQGRIIIFHYDDGKLQQIAEKEIKGACYSMCEFNGKLLASINSTVRLFEWTN 1111
             V PE ++P   R         K++ + +KE KG    +C  NG LL  +   V ++++ +
Sbjct:  1153 VVPEPDQPTSNR---------KIKVLFDKEQKGPVTGLCAINGLLLCGMGQKVFIWQFKD 1203

Query:  1112 EKELRLECSHFNNIIALFLKVKGDFILVGDLMRSLTLLQYKTMEGSFEEISRD 1164
                + +     +  +     ++    +  D   S++L++++    +    SRD
Sbjct:  1204 NDLMGISFLDMHYYVYQLHSLR-TIAIACDARESMSLIRFQEDNKAMSIASRD 1255


>UNIPROTKB|F1NZF7 [details] [associations]
            symbol:SF3B3 "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] InterPro:IPR004871 Pfam:PF03178
            GO:GO:0005634 GO:GO:0003676 GeneTree:ENSGT00530000063396
            EMBL:AADN02051593 EMBL:AADN02051594 IPI:IPI00819465
            Ensembl:ENSGALT00000040057 ArrayExpress:F1NZF7 Uniprot:F1NZF7
        Length = 504

 Score = 132 (51.5 bits), Expect = 7.5e-05, P = 7.5e-05
 Identities = 60/260 (23%), Positives = 115/260 (44%)

Query:   959 EPKVELLGEHCKGPVVEMSSLSYIKPGSTKQSTANQPADFNME-VEVHNLLI-IDQNTFE 1016
             E  VE  GE  +    EM++ +++   +  +S    P   N +   V  ++  I  NT +
Sbjct:   107 EEMVEAAGEDERELAAEMAA-AFLNE-NLPESIFGAPKAGNGQWASVIRVMNPIQGNTLD 164

Query:  1017 ILHAHQLFPGEYALSLISSKFGEDPNTYFVL-GTA---VVHPEENEPKQGRIIIFHY--D 1070
             ++   QL   E A S+   +F      ++VL G A   +++P       G +  +    +
Sbjct:   165 LV---QLEQNEAAFSVAVCRFSNTGEEWYVLVGVAKDLILNPRS--VAGGFVYTYKLLVN 219

Query:  1071 DG-KLQQIAEKEIKGACYSMCEFNGKLLASINSTVRLFEWTNEKELR-LECSHFNNIIAL 1128
              G KL+ + +  ++    ++  F G++L  +   +R+++   +K LR  E  H  N I  
Sbjct:   220 GGEKLEFLHKTPVEEVPAAIAPFQGRVLIGVGKLLRVYDLGKKKLLRKCENKHIANYIC- 278

Query:  1129 FLKVKGDFILVGDLMRSLTLLQYKTMEGSFEEISRDYNPNWMTSIEILDDELFLGAENSY 1188
              ++  G  ++V D+  S   ++YK  E      + D  P W+T+  +LD +   GA+   
Sbjct:   279 GIQTIGHRVIVSDVQESFIWVRYKRNENQLIIFADDTYPRWVTTATLLDYDTVAGADKFG 338

Query:  1189 NLFICQKDSAATS--DEDRT 1206
             N+ + +         DED T
Sbjct:   339 NICVVRLPPNTNDEVDEDPT 358


>CGD|CAL0004251 [details] [associations]
            symbol:orf19.2760 species:5476 "Candida albicans" [GO:0042493
            "response to drug" evidence=IMP] [GO:0005847 "mRNA cleavage and
            polyadenylation specificity factor complex" evidence=IEA]
            [GO:0005829 "cytosol" evidence=IEA] [GO:0005739 "mitochondrion"
            evidence=IEA] [GO:0006369 "termination of RNA polymerase II
            transcription" evidence=IEA] [GO:0006379 "mRNA cleavage"
            evidence=IEA] [GO:0006378 "mRNA polyadenylation" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004871
            Pfam:PF03178 CGD:CAL0004251 GO:GO:0005634 GO:GO:0042493
            GO:GO:0006397 GO:GO:0003723 EMBL:AACQ01000023 EMBL:AACQ01000025
            RefSeq:XP_720278.1 RefSeq:XP_720279.1 RefSeq:XP_720280.1
            RefSeq:XP_720510.1 STRING:Q5AFT3 GeneID:3637848 GeneID:3638158
            GeneID:3638159 GeneID:3638160 KEGG:cal:CaO19.10274
            KEGG:cal:CaO19.10275 KEGG:cal:CaO19.10276 KEGG:cal:CaO19.2760
            eggNOG:COG5161 KO:K14401 Uniprot:Q5AFT3
        Length = 1420

 Score = 98 (39.6 bits), Expect = 0.00021, Sum P(3) = 0.00021
 Identities = 28/102 (27%), Positives = 53/102 (51%)

Query:   809 NFELKASSIRMEELEIQDVQFLHGCQNPTIICIH--QDV-NGRHVKTHE--------ISL 857
             +F + A+++      + D+QFLH  + PTI  +   Q+V  G  +K+ +        + L
Sbjct:   219 SFIIDATTLDSSIDTVVDMQFLHNYREPTIAVLSSKQEVWAGNLIKSKDNIQFQVLTLDL 278

Query:   858 KEKEFTKTPWKQDNIEMEASLVIPVPEPLGGAIIIGQESILY 899
               K  T + +K DN+  E   +IP+P PL G +++G   +++
Sbjct:   279 NLKS-TISVFKIDNLPYEIDRIIPLPSPLNGTLLVGCNELIH 319

 Score = 79 (32.9 bits), Expect = 0.00021, Sum P(3) = 0.00021
 Identities = 28/127 (22%), Positives = 60/127 (47%)

Query:  1073 KLQQIAEKEIKGACYSMCEFNGKLLASINSTVRLFEWTNEKELRLECSHFNNIIALFLKV 1132
             K ++I ++E +GA  S+CE +G+ L S    V + +  ++  + +       +     K 
Sbjct:  1122 KFKEIFKEETRGAITSICELSGRFLVSQGQKVIVRDLQDDGTVPVAFLD-TPVYVSESKS 1180

Query:  1133 KGDFILVGDLMRSLTLLQYKTMEGSFEEISRDYNPNWMTSIEIL--DDELF-LGAENSYN 1189
              G+ +++GDL++   L+ +         + +D     +   + +  DDE+F L A+N+  
Sbjct:  1181 FGNLLILGDLLKGCWLVGFDAEPFRMIMLGKDTQHISVECADFIINDDEIFVLVADNNNV 1240

Query:  1190 LFICQKD 1196
             L +   D
Sbjct:  1241 LHLLNYD 1247

 Score = 59 (25.8 bits), Expect = 0.00021, Sum P(3) = 0.00021
 Identities = 29/118 (24%), Positives = 52/118 (44%)

Query:   625 NFTSSTDLNLVVAKNNRIEIH--------TVT-PE-GLRPVKEIFLYGKIAVMKFFRGPT 674
             NF SST  NL+V K + ++I         T+  P+  L+ + +  L G I  +K  R   
Sbjct:    20 NFISSTKKNLIVGKGSLLQIFETIQLKQSTINKPQYRLKLIDQFKLQGTITDLKSIRTIE 79

Query:   675 DKK-DLLFIITQRTDLNLVVAKNNRIEIHTVTPEGLRPVKEIFLYGKIAVMKFFRGPT 731
             +   D L + T+    +++   ++   I TV+        +   + K+AV +    PT
Sbjct:    80 NPNLDYLMVSTKYAKFSIIKWDHHLNTIATVSLHYYEHCIQNSTFEKLAVSELILEPT 137


>UNIPROTKB|Q5AFT3 [details] [associations]
            symbol:CFT1 "Protein CFT1" species:237561 "Candida albicans
            SC5314" [GO:0042493 "response to drug" evidence=IMP]
            InterPro:IPR004871 Pfam:PF03178 CGD:CAL0004251 GO:GO:0005634
            GO:GO:0042493 GO:GO:0006397 GO:GO:0003723 EMBL:AACQ01000023
            EMBL:AACQ01000025 RefSeq:XP_720278.1 RefSeq:XP_720279.1
            RefSeq:XP_720280.1 RefSeq:XP_720510.1 STRING:Q5AFT3 GeneID:3637848
            GeneID:3638158 GeneID:3638159 GeneID:3638160 KEGG:cal:CaO19.10274
            KEGG:cal:CaO19.10275 KEGG:cal:CaO19.10276 KEGG:cal:CaO19.2760
            eggNOG:COG5161 KO:K14401 Uniprot:Q5AFT3
        Length = 1420

 Score = 98 (39.6 bits), Expect = 0.00021, Sum P(3) = 0.00021
 Identities = 28/102 (27%), Positives = 53/102 (51%)

Query:   809 NFELKASSIRMEELEIQDVQFLHGCQNPTIICIH--QDV-NGRHVKTHE--------ISL 857
             +F + A+++      + D+QFLH  + PTI  +   Q+V  G  +K+ +        + L
Sbjct:   219 SFIIDATTLDSSIDTVVDMQFLHNYREPTIAVLSSKQEVWAGNLIKSKDNIQFQVLTLDL 278

Query:   858 KEKEFTKTPWKQDNIEMEASLVIPVPEPLGGAIIIGQESILY 899
               K  T + +K DN+  E   +IP+P PL G +++G   +++
Sbjct:   279 NLKS-TISVFKIDNLPYEIDRIIPLPSPLNGTLLVGCNELIH 319

 Score = 79 (32.9 bits), Expect = 0.00021, Sum P(3) = 0.00021
 Identities = 28/127 (22%), Positives = 60/127 (47%)

Query:  1073 KLQQIAEKEIKGACYSMCEFNGKLLASINSTVRLFEWTNEKELRLECSHFNNIIALFLKV 1132
             K ++I ++E +GA  S+CE +G+ L S    V + +  ++  + +       +     K 
Sbjct:  1122 KFKEIFKEETRGAITSICELSGRFLVSQGQKVIVRDLQDDGTVPVAFLD-TPVYVSESKS 1180

Query:  1133 KGDFILVGDLMRSLTLLQYKTMEGSFEEISRDYNPNWMTSIEIL--DDELF-LGAENSYN 1189
              G+ +++GDL++   L+ +         + +D     +   + +  DDE+F L A+N+  
Sbjct:  1181 FGNLLILGDLLKGCWLVGFDAEPFRMIMLGKDTQHISVECADFIINDDEIFVLVADNNNV 1240

Query:  1190 LFICQKD 1196
             L +   D
Sbjct:  1241 LHLLNYD 1247

 Score = 59 (25.8 bits), Expect = 0.00021, Sum P(3) = 0.00021
 Identities = 29/118 (24%), Positives = 52/118 (44%)

Query:   625 NFTSSTDLNLVVAKNNRIEIH--------TVT-PE-GLRPVKEIFLYGKIAVMKFFRGPT 674
             NF SST  NL+V K + ++I         T+  P+  L+ + +  L G I  +K  R   
Sbjct:    20 NFISSTKKNLIVGKGSLLQIFETIQLKQSTINKPQYRLKLIDQFKLQGTITDLKSIRTIE 79

Query:   675 DKK-DLLFIITQRTDLNLVVAKNNRIEIHTVTPEGLRPVKEIFLYGKIAVMKFFRGPT 731
             +   D L + T+    +++   ++   I TV+        +   + K+AV +    PT
Sbjct:    80 NPNLDYLMVSTKYAKFSIIKWDHHLNTIATVSLHYYEHCIQNSTFEKLAVSELILEPT 137


>SGD|S000004513 [details] [associations]
            symbol:RSE1 "Protein involved in pre-mRNA splicing"
            species:4932 "Saccharomyces cerevisiae" [GO:0005686 "U2 snRNP"
            evidence=IDA;IPI] [GO:0000245 "spliceosomal complex assembly"
            evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
            evidence=IGI;IMP;IPI] [GO:0007049 "cell cycle" evidence=IEA]
            [GO:0008380 "RNA splicing" evidence=IEA] [GO:0005681 "spliceosomal
            complex" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0030620 "U2 snRNA binding" evidence=IPI]
            [GO:0071004 "U2-type prespliceosome" evidence=IDA]
            InterPro:IPR004871 Pfam:PF03178 SGD:S000004513 EMBL:BK006946
            GO:GO:0007049 EMBL:Z47816 GO:GO:0000245 GO:GO:0005686 GO:GO:0071004
            GeneTree:ENSGT00530000063396 GO:GO:0030620 KO:K12830
            OrthoDB:EOG4FR40R PIR:S50943 RefSeq:NP_013663.1
            ProteinModelPortal:Q04693 DIP:DIP-856N IntAct:Q04693
            MINT:MINT-368995 STRING:Q04693 PaxDb:Q04693 PeptideAtlas:Q04693
            EnsemblFungi:YML049C GeneID:854956 KEGG:sce:YML049C CYGD:YML049c
            eggNOG:KOG1898 HOGENOM:HOG000066036 OMA:DIHESVT NextBio:978033
            Genevestigator:Q04693 GermOnline:YML049C Uniprot:Q04693
        Length = 1361

 Score = 112 (44.5 bits), Expect = 0.00040, Sum P(2) = 0.00040
 Identities = 71/323 (21%), Positives = 122/323 (37%)

Query:   158 VSVMESFTNLAPIIDMVVVDLERQGQGQLVTCSGGFKEGSLRIIRNGIGIEEHACIDLP- 216
             +S++    NL P I   +V         L   +  F    +  + N +         LP 
Sbjct:   475 LSILSQQLNLNPSIKSQIVS-----DSPLSIATKHFTNNKIITLTNAVNYSNLISTSLPP 529

Query:   217 GIKGIWALSIGSPKNLDNTLV-LSFVGHTRVLTLSGAEVEE------TEMGGFTSDQQTF 269
                 +W +   +    +NTL+ ++F   T +L +    +EE      T      S   T 
Sbjct:   530 NATKLWLIPDPATTGDNNTLLFITFPKKTMILQIDNESMEELTPDEATRSAFKLSQDTTI 589

Query:   270 YCGNVDPRTVLQVTPSAAILISTESKARVSS---WEPPNGKSISVVSCNKNQVLCA-TGC 325
             +   +   +++QV  +    I    K+R S+   W PP G  I   + +K Q++ + +  
Sbjct:   590 HTCLMGSHSIIQVCTAELRHIVPTGKSRYSNKLTWVPPAGIRIVCATSSKTQLIISLSNY 649

Query:   326 DVYYLEVHGSEIKQLAHRALEYEVACLDISPLSNEETSSEPAKAQLAAVGLWTDISARLL 385
             ++ Y ++  S    L       E   LD  P S      +   A L A+    +   +++
Sbjct:   650 ELVYFKIDVSS-DSLIELTTHPE---LDTMP-SKVAIVQDTQHADLLAIAD-NEGMIKIM 703

Query:   386 SLPSLEE----VCKEPLGGEIIPRSILMTCFE-GHCYLLVALGDGSMFYFSLDPASGRLT 440
             SL   +E    V    L  E I   I++     G   L V L +G    F +    G  T
Sbjct:   704 SLKDQKEDFLTVISLQLVSEKISDMIMVRDSSIGQLNLHVGLENGVYMKFHIGDVDGSFT 763

Query:   441 DKKKVTLGTQPTVLKTFRSLSTT 463
             D K+  LG +P  L   R +S +
Sbjct:   764 DIKRRFLGLKPVSLSYLREISVS 786

 Score = 72 (30.4 bits), Expect = 0.00040, Sum P(2) = 0.00040
 Identities = 26/120 (21%), Positives = 55/120 (45%)

Query:  1074 LQQIAEKEIKGACYSMCEFNGKLLASINSTVRLFEWTNEKELRLECSH----FNNIIALF 1129
             ++ + + EI    ++M +F   LL ++ ST+ L+    ++ LR   +        I+++ 
Sbjct:  1019 IELLHQTEIISPIHAMLKFKNFLLTAMGSTIVLYGLGKKQLLRRSVTQTPVSITKIVSMH 1078

Query:  1130 LKVKGDFILVGDLMRSLTLLQYKTMEGSFEEISRDYNPNWMTSIEILDDELFLGAENSYN 1189
              +   + + VGD+  S+TL  +      F     D     +T ++ LD+   +GA+   N
Sbjct:  1079 -QWNYERLAVGDIHESVTLFIWDPAGNVFIPYVDDSVKRHVTVLKFLDEATVIGADRYGN 1137


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.137   0.401    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0     1225      1187   0.00096  123 3  11 22  0.40    34
                                                     39  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  73
  No. of states in DFA:  624 (66 KB)
  Total size of DFA:  516 KB (2237 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  98.37u 0.24s 98.61t   Elapsed:  00:00:06
  Total cpu time:  98.40u 0.24s 98.64t   Elapsed:  00:00:06
  Start:  Thu Aug 15 14:13:28 2013   End:  Thu Aug 15 14:13:34 2013

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