RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy7977
         (1225 letters)



>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain
           {Paracoccus denitrificans [TaxId: 266]}
          Length = 368

 Score = 31.9 bits (71), Expect = 0.54
 Identities = 25/287 (8%), Positives = 67/287 (23%), Gaps = 54/287 (18%)

Query: 270 YCGNVDPRTVLQVTPSAAILISTESKARVSSWEPPNGKSISVVSCNKNQVLCATGCDVYY 329
           +        +     SA +L      +  +    P      +        +       +Y
Sbjct: 120 FSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAAATHY 179

Query: 330 LEVHGSEIKQLAHRALEYEVACLDISPLSNEETSSEPAKAQLAAVGLWTDISARLLSLPS 389
           L    + +      A       +       +  SS+ A+A    + +W            
Sbjct: 180 LGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVA--------- 230

Query: 390 LEEVCKEPLGGEIIPRSILMTCFEGHCYLLVALGDGSMFYFSLDPASGRLTDKKKVTLGT 449
                                              G+    ++D            + G 
Sbjct: 231 ------------------------SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGF 266

Query: 450 QPTVLKTFRSLSTTNVFACSDRP--TVIYSSNHKLVFSNVNLRQVNHMCSLNAESYPDSL 507
           Q          +T  +   +     + + ++ +    +    +       ++     D++
Sbjct: 267 QMVAK----LKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGP---ISNGHDSDAI 319

Query: 508 ALATD-------STFTFGTIDEI----QKLHIRTVPLGEAPRRIAYQ 543
             A D       ++     +D       +    +V L + P  ++ Q
Sbjct: 320 IAAQDGASDNYANSAGTEVLDIYDAASDQD-QSSVELDKGPESLSVQ 365


>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7,
            FBXW7 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 342

 Score = 30.2 bits (66), Expect = 1.5
 Identities = 8/48 (16%), Positives = 19/48 (39%), Gaps = 2/48 (4%)

Query: 1083 KGACYSMCEFNGKLLA--SINSTVRLFEWTNEKELRLECSHFNNIIAL 1128
                 +  +F G  +   S ++T++++     K LR    H   + + 
Sbjct: 16   DDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSS 63


>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli
           [TaxId: 562]}
          Length = 333

 Score = 29.8 bits (65), Expect = 2.1
 Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 1/37 (2%)

Query: 417 YLLVAL-GDGSMFYFSLDPASGRLTDKKKVTLGTQPT 452
           YL+ A      +  + +    G L +K +  +G  P 
Sbjct: 289 YLIAAGQKSHHISVYEIVGEQGLLHEKGRYAVGQGPM 325


>d1qf6a1 c.51.1.1 (A:533-642) Threonyl-tRNA synthetase (ThrRS),
           C-terminal domain {Escherichia coli [TaxId: 562]}
          Length = 110

 Score = 27.3 bits (60), Expect = 4.7
 Identities = 10/43 (23%), Positives = 20/43 (46%)

Query: 86  DLAGRLFMLLLEKEEKMDGTFSVKEPKVELLGEISIPECLTYL 128
            L    +ML+   +E   G  +V+  + + LG + + E +  L
Sbjct: 54  TLRRVPYMLVCGDKEVESGKVAVRTRRGKDLGSMDVNEVIEKL 96


>d1z21a1 a.243.1.2 (A:42-145) Yop proteins translocation protein H,
           YscH (IcrP) {Yersinia pestis [TaxId: 632]}
          Length = 104

 Score = 26.8 bits (59), Expect = 5.7
 Identities = 9/44 (20%), Positives = 14/44 (31%), Gaps = 5/44 (11%)

Query: 64  LLRGFSSLGS-----LWNGWSERYLLGDLAGRLFMLLLEKEEKM 102
           +L+ F S G      L              G  ++  L  +E M
Sbjct: 58  VLQQFDSFGKRWEAILLQVLEGIKPNESQVGLPYLSELINKELM 101


>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G
           protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}
          Length = 340

 Score = 28.2 bits (61), Expect = 6.4
 Identities = 11/88 (12%), Positives = 28/88 (31%)

Query: 234 NTLVLSFVGHTRVLTLSGAEVEETEMGGFTSDQQTFYCGNVDPRTVLQVTPSAAILISTE 293
           N +     G+        A     ++          +   +   T +  + S  +L++  
Sbjct: 230 NAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGY 289

Query: 294 SKARVSSWEPPNGKSISVVSCNKNQVLC 321
                + W+        V++ + N+V C
Sbjct: 290 DDFNCNVWDALKADRAGVLAGHDNRVSC 317


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.136    0.396 

Gapped
Lambda     K      H
   0.267   0.0373    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 4,478,697
Number of extensions: 215875
Number of successful extensions: 445
Number of sequences better than 10.0: 1
Number of HSP's gapped: 445
Number of HSP's successfully gapped: 7
Length of query: 1225
Length of database: 2,407,596
Length adjustment: 96
Effective length of query: 1129
Effective length of database: 1,089,516
Effective search space: 1230063564
Effective search space used: 1230063564
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (27.1 bits)