BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7978
(542 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1DIA|A Chain A, Human Methylenetetrahydrofolate Dehydrogenase
Cyclohydrolase Complexed With Nadp And Inhibitor
Ly249543
pdb|1DIA|B Chain B, Human Methylenetetrahydrofolate Dehydrogenase
Cyclohydrolase Complexed With Nadp And Inhibitor
Ly249543
pdb|1DIB|A Chain A, Human Methylenetetrahydrofolate Dehydrogenase
Cyclohydrolase Complexed With Nadp And Inhibitor
Ly345899
pdb|1DIB|B Chain B, Human Methylenetetrahydrofolate Dehydrogenase
Cyclohydrolase Complexed With Nadp And Inhibitor
Ly345899
pdb|1DIG|A Chain A, Human Methylenetetrahydrofolate Dehydrogenase
Cyclohydrolase Complexed With Nadp And Inhibitor
Ly374571
pdb|1DIG|B Chain B, Human Methylenetetrahydrofolate Dehydrogenase
Cyclohydrolase Complexed With Nadp And Inhibitor
Ly374571
Length = 306
Score = 143 bits (361), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 69/118 (58%), Positives = 84/118 (71%)
Query: 8 FWLWVLANPSMSKTKNIQDVVKSADILVVGIGQPEYVKGDWIKPGAVVIDCGINSVPDAS 67
W SKT ++ + V DILVV GQPE VKG+WIKPGA+VIDCGIN VPD
Sbjct: 186 LWNNATVTTCHSKTAHLDEEVNKGDILVVATGQPEMVKGEWIKPGAIVIDCGINYVPDDK 245
Query: 68 KASGQKLVGDVQYAEAKNVASWITPVPGGVGPMTVAMLMNNTVLSAERYIDRLLKPSW 125
K +G+K+VGDV Y EAK AS+ITPVPGGVGPMTVAMLM +TV SA+R++++ W
Sbjct: 246 KPNGRKVVGDVAYDEAKERASFITPVPGGVGPMTVAMLMQSTVESAKRFLEKFKPGKW 303
>pdb|1A4I|A Chain A, Human Tetrahydrofolate Dehydrogenase CYCLOHYDROLASE
pdb|1A4I|B Chain B, Human Tetrahydrofolate Dehydrogenase CYCLOHYDROLASE
Length = 301
Score = 142 bits (358), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 68/113 (60%), Positives = 83/113 (73%)
Query: 8 FWLWVLANPSMSKTKNIQDVVKSADILVVGIGQPEYVKGDWIKPGAVVIDCGINSVPDAS 67
W SKT ++ + V DILVV GQPE VKG+WIKPGA+VIDCGIN VPD
Sbjct: 186 LWNNATVTTCHSKTAHLDEEVNKGDILVVATGQPEMVKGEWIKPGAIVIDCGINYVPDDK 245
Query: 68 KASGQKLVGDVQYAEAKNVASWITPVPGGVGPMTVAMLMNNTVLSAERYIDRL 120
K +G+K+VGDV Y EAK AS+ITPVPGGVGPMTVAMLM +TV SA+R++++
Sbjct: 246 KPNGRKVVGDVAYDEAKERASFITPVPGGVGPMTVAMLMQSTVESAKRFLEKF 298
>pdb|1FPM|A Chain A, Monovalent Cation Binding Sites In
N10-formyltetrahydrofolate Synthetase From Moorella
Thermoacetica
pdb|1FPM|B Chain B, Monovalent Cation Binding Sites In
N10-formyltetrahydrofolate Synthetase From Moorella
Thermoacetica
pdb|1FP7|A Chain A, Monovalent Cation Binding Sites In
N10-Formyltetrahydrofolate Synthetase From Moorella
Thermoacetica
pdb|1FP7|B Chain B, Monovalent Cation Binding Sites In
N10-Formyltetrahydrofolate Synthetase From Moorella
Thermoacetica
pdb|3PZX|A Chain A, Native Crystal Structure Of N10-Formyltetrahydrofolate
Synthetase
pdb|3PZX|B Chain B, Native Crystal Structure Of N10-Formyltetrahydrofolate
Synthetase
pdb|3QB6|A Chain A, Crystal Strucutre Of N10-Formyltetrahydrofolate Synthetase
With Folate
pdb|3QB6|B Chain B, Crystal Strucutre Of N10-Formyltetrahydrofolate Synthetase
With Folate
pdb|3RBO|A Chain A, Crystal Structure Of N10-Formyltetrahydrofolate Synthetase
With Adp And Formylphosphate
pdb|3RBO|B Chain B, Crystal Structure Of N10-Formyltetrahydrofolate Synthetase
With Adp And Formylphosphate
pdb|3SIN|A Chain A, Crystal Strucutre Of N10-Formyltetrahydrofolate Synthetase
With Zd9331 And Formylphosphate
pdb|3SIN|B Chain B, Crystal Strucutre Of N10-Formyltetrahydrofolate Synthetase
With Zd9331 And Formylphosphate
pdb|3QUS|A Chain A, Crystal Strucutre Of N10-Formyltetrahydrofolate Synthetase
With Atpgs
pdb|3QUS|B Chain B, Crystal Strucutre Of N10-Formyltetrahydrofolate Synthetase
With Atpgs
Length = 557
Score = 122 bits (306), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 87/255 (34%), Positives = 124/255 (48%), Gaps = 12/255 (4%)
Query: 288 NIKCRTSGKIPDAVVLVTTVRALKMHGGGPSVVSGQPLKPEYTENTRAVLRGEDSFLLYC 347
++KCR +G PDA V+V TVRALKMHGG P TEN A+ G + +
Sbjct: 315 DVKCRYAGFKPDATVIVATVRALKMHGGVPK-------SDLATENLEALREGFANLEKHI 367
Query: 348 KLDSQYLEHPPVTMLIYYTYTPAEWEIIRKAAKQAGAHDAVVCENWXXXXXXXXXXXXXX 407
+ ++ V + + T T AE ++ + +AGA A+ +W
Sbjct: 368 ENIGKFGVPAVVAINAFPTDTEAELNLLYELCAKAGAEVAL---SWAKGGEGGLELARKV 424
Query: 408 XXXTELKDKQFKYLYDIHDPLLTKIQTVAREMYGVHKVDCPQPVLEKLQKLERLGYGRLT 467
E + F LY++ + KI +A E+YG V+ + +Q+ E LGYG L
Sbjct: 425 LQTLESRPSNFHVLYNLDLSIKDKIAKIATEIYGADGVNYTAEADKAIQRYESLGYGNLP 484
Query: 468 VCMAKTALSLSGDPTIKGVVPPDYVLPIHDVYVSAGAGFVVVIAGDISKMPGLGTRPSIY 527
V MAKT S S D T G P ++ + + +V +SAG +V I G I MPGL RP+
Sbjct: 485 VVMAKTQYSFSDDMTKLG-RPRNFTITVREVRLSAGGRLIVPITGAIMTMPGLPKRPAAC 543
Query: 528 DIDIDTRTGEIEGLF 542
+IDID G I GLF
Sbjct: 544 NIDIDA-DGVITGLF 557
Score = 89.7 bits (221), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 51/133 (38%), Positives = 66/133 (49%), Gaps = 18/133 (13%)
Query: 136 SPVPSDIDIARAQDPKDINQLAQEIGLHVSEVSSYGRSKAKISTEVLDRLKRVQD----- 190
S VPSDI+IA+A K + +LA+ +G+ EV YG+ KAKIS +V RLK D
Sbjct: 2 SKVPSDIEIAQAAKMKPVMELARGLGIQEDEVELYGKYKAKISLDVYRRLKDKPDGKLIL 61
Query: 191 -------------XXXXXXXXXXXXXXXXXTFACVRQPSQGPTFGIKXXXXXXXYSQVIP 237
C+R+PS GP+FGIK Y+QV+P
Sbjct: 62 VTAITPTPAGEGKTTTSVGLTDALARLGKRVMVCLREPSLGPSFGIKGGAAGGGYAQVVP 121
Query: 238 MEEFNLHLTGDIH 250
ME+ NLH TGDIH
Sbjct: 122 MEDINLHFTGDIH 134
>pdb|1EG7|A Chain A, The Crystal Structure Of Formyltetrahydrofolate Synthetase
From Moorella Thermoacetica
pdb|1EG7|B Chain B, The Crystal Structure Of Formyltetrahydrofolate Synthetase
From Moorella Thermoacetica
Length = 557
Score = 122 bits (306), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 87/255 (34%), Positives = 124/255 (48%), Gaps = 12/255 (4%)
Query: 288 NIKCRTSGKIPDAVVLVTTVRALKMHGGGPSVVSGQPLKPEYTENTRAVLRGEDSFLLYC 347
++KCR +G PDA V+V TVRALKMHGG P TEN A+ G + +
Sbjct: 315 DVKCRYAGFKPDATVIVATVRALKMHGGVPK-------SDLATENLEALREGFANLEKHI 367
Query: 348 KLDSQYLEHPPVTMLIYYTYTPAEWEIIRKAAKQAGAHDAVVCENWXXXXXXXXXXXXXX 407
+ ++ V + + T T AE ++ + +AGA A+ +W
Sbjct: 368 ENIGKFGVPAVVAINAFPTDTEAELNLLYELCAKAGAEVAL---SWAKGGEGGLELARKV 424
Query: 408 XXXTELKDKQFKYLYDIHDPLLTKIQTVAREMYGVHKVDCPQPVLEKLQKLERLGYGRLT 467
E + F LY++ + KI +A E+YG V+ + +Q+ E LGYG L
Sbjct: 425 LQTLESRPSNFHVLYNLDLSIKDKIAKIATEIYGADGVNYTAEADKAIQRYESLGYGNLP 484
Query: 468 VCMAKTALSLSGDPTIKGVVPPDYVLPIHDVYVSAGAGFVVVIAGDISKMPGLGTRPSIY 527
V MAKT S S D T G P ++ + + +V +SAG +V I G I MPGL RP+
Sbjct: 485 VVMAKTQYSFSDDMTKLG-RPRNFTITVREVRLSAGGRLIVPITGAIMTMPGLPKRPAAC 543
Query: 528 DIDIDTRTGEIEGLF 542
+IDID G I GLF
Sbjct: 544 NIDIDA-DGVITGLF 557
Score = 89.7 bits (221), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 51/133 (38%), Positives = 66/133 (49%), Gaps = 18/133 (13%)
Query: 136 SPVPSDIDIARAQDPKDINQLAQEIGLHVSEVSSYGRSKAKISTEVLDRLKRVQD----- 190
S VPSDI+IA+A K + +LA+ +G+ EV YG+ KAKIS +V RLK D
Sbjct: 2 SKVPSDIEIAQAAKMKPVMELARGLGIQEDEVELYGKYKAKISLDVYRRLKDKPDGKLIL 61
Query: 191 -------------XXXXXXXXXXXXXXXXXTFACVRQPSQGPTFGIKXXXXXXXYSQVIP 237
C+R+PS GP+FGIK Y+QV+P
Sbjct: 62 VTAITPTPAGEGKTTTSVGLTDALARLGKRVMVCLREPSLGPSFGIKGGAAGGGYAQVVP 121
Query: 238 MEEFNLHLTGDIH 250
ME+ NLH TGDIH
Sbjct: 122 MEDINLHFTGDIH 134
>pdb|3DO6|A Chain A, Crystal Structure Of Putative Formyltetrahydrofolate
Synthetase (Tm1766) From Thermotoga Maritima At 1.85 A
Resolution
pdb|3DO6|B Chain B, Crystal Structure Of Putative Formyltetrahydrofolate
Synthetase (Tm1766) From Thermotoga Maritima At 1.85 A
Resolution
Length = 543
Score = 115 bits (287), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 81/258 (31%), Positives = 131/258 (50%), Gaps = 16/258 (6%)
Query: 286 ILNIKCRTSGKIPDAVVLVTTVRALKMHGGGPSVVSGQPLKPEYTENTRAVLRGEDSFLL 345
++ R G P+A VLV TVRALK HGG LK + EN A+ G + +
Sbjct: 299 FIDFVSRVGGFYPNAAVLVATVRALKYHGGAN-------LKNIHEENLEALKEGFKNLRV 351
Query: 346 YCKLDSQYLEHPPVTMLIYYTYTPAEWEI--IRKAAKQAGAHDAVVCENWXXXXXXXXXX 403
+ + ++ + PV + + T E EI + K ++ G AV +
Sbjct: 352 HVENLRKF--NLPVVVALNRFSTDTEKEIAYVVKECEKLGVRVAV---SEVFKKGSEGGV 406
Query: 404 XXXXXXXTELKDKQFKYLYDIHDPLLTKIQTVAREMYGVHKVDCPQPVLEKLQKLERLGY 463
KD + YLY+ +DP+ KI+ +A+E+Y +V+ L+ +++ G+
Sbjct: 407 ELAKAVAEAAKDVEPAYLYEXNDPVEKKIEILAKEIYRAGRVEFSDTAKNALKFIKKHGF 466
Query: 464 GRLTVCMAKTALSLSGDPTIKGVVPPDYVLPIHDVYVSAGAGFVVVIAGDISKMPGLGTR 523
L V +AKT S+S DP+++G P Y + D++VSAGAGFVV ++GDI+ PGL +
Sbjct: 467 DELPVIVAKTPKSISHDPSLRG-APEGYTFVVSDLFVSAGAGFVVALSGDINLXPGLPKK 525
Query: 524 PSIYDIDIDTRTGEIEGL 541
P+ + D+D +G I G+
Sbjct: 526 PNALNXDVDD-SGNIVGV 542
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 26/43 (60%)
Query: 208 TFACVRQPSQGPTFGIKXXXXXXXYSQVIPMEEFNLHLTGDIH 250
+ +R+PS GPT G+K S+V+P +E NLH TGD H
Sbjct: 78 SIVTLREPSLGPTLGLKGGATGGGRSRVLPSDEINLHFTGDXH 120
>pdb|4A26|A Chain A, The Crystal Structure Of Leishmania Major N5,N10-
Methylenetetrahydrofolate DehydrogenaseCYCLOHYDROLASE
pdb|4A26|B Chain B, The Crystal Structure Of Leishmania Major N5,N10-
Methylenetetrahydrofolate DehydrogenaseCYCLOHYDROLASE
Length = 300
Score = 113 bits (283), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 51/94 (54%), Positives = 71/94 (75%)
Query: 17 SMSKTKNIQDVVKSADILVVGIGQPEYVKGDWIKPGAVVIDCGINSVPDASKASGQKLVG 76
S + T+++ D +++ADI++ +GQP YVKG+WIK GA V+D G VPD S+ G +LVG
Sbjct: 197 SGTSTEDMIDYLRTADIVIAAMGQPGYVKGEWIKEGAAVVDVGTTPVPDPSRKDGYRLVG 256
Query: 77 DVQYAEAKNVASWITPVPGGVGPMTVAMLMNNTV 110
DV + EA A+WI+PVPGGVGPMT+AML+ NT+
Sbjct: 257 DVCFEEAAARAAWISPVPGGVGPMTIAMLLENTL 290
>pdb|4A5O|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa N5, N10-
Methylenetetrahydrofolate Dehydrogenase-Cyclohydrolase
(Fold)
pdb|4A5O|B Chain B, Crystal Structure Of Pseudomonas Aeruginosa N5, N10-
Methylenetetrahydrofolate Dehydrogenase-Cyclohydrolase
(Fold)
pdb|4A5O|C Chain C, Crystal Structure Of Pseudomonas Aeruginosa N5, N10-
Methylenetetrahydrofolate Dehydrogenase-Cyclohydrolase
(Fold)
pdb|4A5O|D Chain D, Crystal Structure Of Pseudomonas Aeruginosa N5, N10-
Methylenetetrahydrofolate Dehydrogenase-Cyclohydrolase
(Fold)
Length = 286
Score = 103 bits (256), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 53/98 (54%), Positives = 66/98 (67%), Gaps = 6/98 (6%)
Query: 21 TKNIQDVVKSADILVVGIGQPEYVKGDWIKPGAVVIDCGINSVPDASKASGQKLVGDVQY 80
T+++ D V AD++VV G+P VKG+WIK GA+VID GIN D +LVGDV+Y
Sbjct: 195 TRDLADHVSRADLVVVAAGKPGLVKGEWIKEGAIVIDVGINRQADG------RLVGDVEY 248
Query: 81 AEAKNVASWITPVPGGVGPMTVAMLMNNTVLSAERYID 118
A ASWITPVPGGVGPMT A L+ NT+ +AE D
Sbjct: 249 EVAAQRASWITPVPGGVGPMTRACLLENTLHAAEHLHD 286
>pdb|1B0A|A Chain A, 5,10, Methylene-Tetrahydropholate
DehydrogenaseCYCLOHYDROLASE FROM E COLI
Length = 288
Score = 102 bits (253), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 50/98 (51%), Positives = 70/98 (71%), Gaps = 6/98 (6%)
Query: 21 TKNIQDVVKSADILVVGIGQPEYVKGDWIKPGAVVIDCGINSVPDASKASGQKLVGDVQY 80
TKN++ V++AD+L+V +G+P ++ GDWIK GA+VID GIN + + K+VGDV +
Sbjct: 193 TKNLRHHVENADLLIVAVGKPGFIPGDWIKEGAIVIDVGINRLENG------KVVGDVVF 246
Query: 81 AEAKNVASWITPVPGGVGPMTVAMLMNNTVLSAERYID 118
+A AS+ITPVPGGVGPMTVA L+ NT+ + Y D
Sbjct: 247 EDAAKRASYITPVPGGVGPMTVATLIENTLQACVEYHD 284
>pdb|3L07|A Chain A, Methylenetetrahydrofolate
DehydrogenaseMETHENYLTETRAHYDROFOLATE Cyclohydrolase,
Putative Bifunctional Protein Fold From Francisella
Tularensis.
pdb|3L07|B Chain B, Methylenetetrahydrofolate
DehydrogenaseMETHENYLTETRAHYDROFOLATE Cyclohydrolase,
Putative Bifunctional Protein Fold From Francisella
Tularensis
Length = 285
Score = 85.5 bits (210), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 43/95 (45%), Positives = 59/95 (62%), Gaps = 7/95 (7%)
Query: 21 TKNIQDVVKSADILVVGIGQPEYVKGDWIKPGAVVIDCGINSVPDASKASGQKLVGDVQY 80
T +++ ADIL+V +G+P ++ D +K GAVVID GIN V K+VGDV +
Sbjct: 195 TTDLKSHTTKADILIVAVGKPNFITADMVKEGAVVIDVGINHVDG-------KIVGDVDF 247
Query: 81 AEAKNVASWITPVPGGVGPMTVAMLMNNTVLSAER 115
A K+ + ITPVPGGVGPMT+ L+ NT A+
Sbjct: 248 AAVKDKVAAITPVPGGVGPMTITELLYNTFQCAQE 282
>pdb|4B4U|A Chain A, Crystal Structure Of Acinetobacter Baumannii N5,
N10-Methylenetetrahydrofolate
Dehydrogenase-Cyclohydrolase (Fold) Complexed With Nadp
Cofactor
pdb|4B4U|B Chain B, Crystal Structure Of Acinetobacter Baumannii N5,
N10-Methylenetetrahydrofolate
Dehydrogenase-Cyclohydrolase (Fold) Complexed With Nadp
Cofactor
pdb|4B4V|A Chain A, Crystal Structure Of Acinetobacter Baumannii N5, N10-
Methylenetetrahydrofolate Dehydrogenase-Cyclohydrolase
(Fold) Complexed With Nadp Cofactor And Inhibitor
Ly354899
pdb|4B4V|B Chain B, Crystal Structure Of Acinetobacter Baumannii N5, N10-
Methylenetetrahydrofolate Dehydrogenase-Cyclohydrolase
(Fold) Complexed With Nadp Cofactor And Inhibitor
Ly354899
pdb|4B4W|A Chain A, Crystal Structure Of Acinetobacter Baumannii N5,
N10-Methylenetetrahydrofolate
Dehydrogenase-Cyclohydrolase (Fold) Complexed With Nadp
Cofactor And An Inhibitor
pdb|4B4W|B Chain B, Crystal Structure Of Acinetobacter Baumannii N5,
N10-Methylenetetrahydrofolate
Dehydrogenase-Cyclohydrolase (Fold) Complexed With Nadp
Cofactor And An Inhibitor
Length = 303
Score = 85.1 bits (209), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 43/99 (43%), Positives = 63/99 (63%), Gaps = 7/99 (7%)
Query: 19 SKTKNIQDVVKSADILVVGIGQPEYVKGDWIKPGAVVIDCGINSVPDASKASGQKLVGDV 78
S+T+N+ ++VK ADI+V +G+ E ++ DWIK GAVV+D G + VGD+
Sbjct: 211 SRTQNLPELVKQADIIVGAVGKAELIQKDWIKQGAVVVDAGFHPRDGGG-------VGDI 263
Query: 79 QYAEAKNVASWITPVPGGVGPMTVAMLMNNTVLSAERYI 117
Q + +AS TPVPGGVGPMT+ L+ TV +AE+ +
Sbjct: 264 QLQGIEEIASAYTPVPGGVGPMTITTLIRQTVEAAEKAL 302
>pdb|3P2O|A Chain A, Crystal Structure Of Fold Bifunctional Protein From
Campylobacter Jejuni
pdb|3P2O|B Chain B, Crystal Structure Of Fold Bifunctional Protein From
Campylobacter Jejuni
Length = 285
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 40/99 (40%), Positives = 61/99 (61%), Gaps = 6/99 (6%)
Query: 20 KTKNIQDVVKSADILVVGIGQPEYVKGDWIKPGAVVIDCGINSVPDASKASGQKLVGDVQ 79
KTK++ + AD+++V G ++ D +K G +V+D GIN + K+VGDV
Sbjct: 193 KTKDLSLYTRQADLIIVAAGCVNLLRSDXVKEGVIVVDVGINRLESG------KIVGDVD 246
Query: 80 YAEAKNVASWITPVPGGVGPMTVAMLMNNTVLSAERYID 118
+ E +S+ITPVPGGVGP T+A L+ NTV SA+ ++
Sbjct: 247 FEEVSKKSSYITPVPGGVGPXTIAXLLENTVKSAKNRLN 285
>pdb|3NGL|A Chain A, Crystal Structure Of Bifunctional
5,10-Methylenetetrahydrofolate Dehydrogenase
CYCLOHYDROLASE FROM THERMOPLASMA ACIDOPHILUM
pdb|3NGL|C Chain C, Crystal Structure Of Bifunctional
5,10-Methylenetetrahydrofolate Dehydrogenase
CYCLOHYDROLASE FROM THERMOPLASMA ACIDOPHILUM
pdb|3NGX|A Chain A, Crystal Structure Of Bifunctional
5,10-Methylenetetrahydrofolate Dehydrogenase
CYCLOHYDROLASE FROM THERMOPLASMA ACIDOPHILUM
pdb|3NGX|B Chain B, Crystal Structure Of Bifunctional
5,10-Methylenetetrahydrofolate Dehydrogenase
CYCLOHYDROLASE FROM THERMOPLASMA ACIDOPHILUM
Length = 276
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 41/96 (42%), Positives = 60/96 (62%), Gaps = 7/96 (7%)
Query: 19 SKTKNIQDVVKSADILVVGIGQPEYVKGDWIKPGAVVIDCGINSVPDASKASGQKLVGDV 78
SKTK+I + +S+ I+VV +G+P ++ + + PG+VVID GIN V D K+VGD
Sbjct: 182 SKTKDIGSMTRSSKIVVVAVGRPGFLNREMVTPGSVVIDVGINYVND-------KVVGDA 234
Query: 79 QYAEAKNVASWITPVPGGVGPMTVAMLMNNTVLSAE 114
+ + ITPVPGGVGP+T ++ N V +AE
Sbjct: 235 NFEDLSEYVEAITPVPGGVGPITATNILENVVKAAE 270
>pdb|2C2X|A Chain A, Three Dimensional Structure Of Bifunctional
Methylenetetrahydrofolate Dehydrogenase-Cyclohydrolase
From Mycobacterium Tuberculosis
pdb|2C2X|B Chain B, Three Dimensional Structure Of Bifunctional
Methylenetetrahydrofolate Dehydrogenase-Cyclohydrolase
From Mycobacterium Tuberculosis
pdb|2C2Y|A Chain A, Three Dimensional Structure Of Bifunctional
Methylenetetrahydrofolate Dehydrogenase-Cyclohydrolase
From Mycobacterium Tuberculosis
Length = 281
Score = 65.9 bits (159), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 56/97 (57%), Gaps = 8/97 (8%)
Query: 19 SKTKNIQDVVKSADILVVGIGQPEYVKGDWIKPGAVVIDCGINSVPDASKASGQKLVGDV 78
+ T+++ + + ADI+V +G + D ++PGA VID G++ D LVGDV
Sbjct: 192 TGTRDLPALTRQADIVVAAVGVAHLLTADMVRPGAAVIDVGVSRTDDG-------LVGDV 244
Query: 79 QYAEAKNVASWITPVPGGVGPMTVAMLMNNTVLSAER 115
+ + +A ++P PGGVGP+T A L+ N V AER
Sbjct: 245 -HPDVWELAGHVSPNPGGVGPLTRAFLLTNVVELAER 280
>pdb|2EBY|A Chain A, Crystal Structure Of A Hypothetical Protein From E. Coli
pdb|2EBY|B Chain B, Crystal Structure Of A Hypothetical Protein From E. Coli
Length = 113
Score = 32.3 bits (72), Expect = 0.77, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query: 139 PSDIDIARAQDPKD--INQLAQEIGLHVSEVSSYGRSKAKISTEVLDRLKRVQD 190
P DI + +P D IN+LA+ + +H + VS+ + K++TE+ RL +V D
Sbjct: 11 PGDILLYEYLEPLDLKINELAELLHVHRNSVSALINNNRKLTTEMAFRLAKVFD 64
>pdb|2I99|A Chain A, Crystal Structure Of Human Mu_crystallin At 2.6 Angstrom
pdb|2I99|B Chain B, Crystal Structure Of Human Mu_crystallin At 2.6 Angstrom
Length = 312
Score = 29.3 bits (64), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Query: 23 NIQDVVKSADILV-VGIGQPEYVKGDWIKPGAVVIDCGINSVPDASKASGQKLVGDVQYA 81
++Q+ V AD+++ V + + G+W+KPGA + G S PD + + + V Y
Sbjct: 189 SVQEAVAGADVIITVTLATEPILFGEWVKPGAHINAVG-ASRPDWRELDDELMKEAVLYV 247
Query: 82 EAKNVA 87
+++ A
Sbjct: 248 DSQEAA 253
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,939,780
Number of Sequences: 62578
Number of extensions: 584619
Number of successful extensions: 1372
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1339
Number of HSP's gapped (non-prelim): 28
length of query: 542
length of database: 14,973,337
effective HSP length: 104
effective length of query: 438
effective length of database: 8,465,225
effective search space: 3707768550
effective search space used: 3707768550
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)