Query psy7978
Match_columns 542
No_of_seqs 350 out of 2061
Neff 4.6
Searched_HMMs 46136
Date Fri Aug 16 23:41:37 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7978.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7978hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4230|consensus 100.0 7E-191 2E-195 1501.7 39.5 532 1-542 174-935 (935)
2 PRK13507 formate--tetrahydrofo 100.0 3E-168 7E-173 1339.7 37.1 401 133-542 2-587 (587)
3 PLN02759 Formate--tetrahydrofo 100.0 5E-167 1E-171 1337.3 38.4 406 131-542 9-637 (637)
4 PF01268 FTHFS: Formate--tetra 100.0 4E-168 8E-173 1343.2 20.0 388 138-542 1-557 (557)
5 PTZ00386 formyl tetrahydrofola 100.0 3E-165 6E-170 1321.9 36.8 398 130-542 7-625 (625)
6 COG2759 MIS1 Formyltetrahydrof 100.0 2E-164 5E-169 1277.7 32.4 386 140-542 1-554 (554)
7 PRK13506 formate--tetrahydrofo 100.0 8E-160 2E-164 1277.5 36.1 395 138-542 1-578 (578)
8 PRK13505 formate--tetrahydrofo 100.0 8E-154 2E-158 1234.1 35.4 388 137-542 1-557 (557)
9 cd00477 FTHFS Formyltetrahydro 100.0 3E-147 6E-152 1172.5 32.0 355 154-525 1-524 (524)
10 COG0190 FolD 5,10-methylene-te 100.0 2.3E-40 4.9E-45 333.8 10.3 112 1-118 168-281 (283)
11 PLN02616 tetrahydrofolate dehy 100.0 5.5E-40 1.2E-44 340.8 9.7 118 1-118 243-362 (364)
12 PLN02897 tetrahydrofolate dehy 100.0 9.9E-40 2.1E-44 337.5 9.6 117 1-117 226-344 (345)
13 PRK14185 bifunctional 5,10-met 100.0 1.7E-39 3.6E-44 330.5 10.1 116 1-116 169-290 (293)
14 PRK14171 bifunctional 5,10-met 100.0 2.2E-39 4.8E-44 328.9 9.8 111 1-117 171-283 (288)
15 PLN02516 methylenetetrahydrofo 100.0 5.5E-39 1.2E-43 327.5 10.7 118 1-118 179-298 (299)
16 PRK14166 bifunctional 5,10-met 100.0 5.5E-39 1.2E-43 325.4 9.6 110 1-116 169-280 (282)
17 PRK14170 bifunctional 5,10-met 100.0 6.9E-39 1.5E-43 324.8 9.9 112 1-118 169-282 (284)
18 PRK14169 bifunctional 5,10-met 100.0 6.7E-39 1.4E-43 324.8 9.7 111 1-117 168-280 (282)
19 PRK14181 bifunctional 5,10-met 100.0 7.6E-39 1.6E-43 324.9 9.5 115 1-116 165-285 (287)
20 PRK14167 bifunctional 5,10-met 100.0 1.1E-38 2.4E-43 325.1 9.9 117 1-118 169-291 (297)
21 PF02882 THF_DHG_CYH_C: Tetrah 100.0 2.4E-38 5.2E-43 297.7 10.2 111 1-116 48-160 (160)
22 PRK14182 bifunctional 5,10-met 100.0 1.6E-38 3.5E-43 321.9 9.5 111 1-117 169-281 (282)
23 PRK14187 bifunctional 5,10-met 100.0 2.1E-38 4.6E-43 322.6 9.6 114 1-117 172-287 (294)
24 PRK14180 bifunctional 5,10-met 100.0 1.9E-38 4.2E-43 321.4 9.1 109 1-116 170-280 (282)
25 PRK14172 bifunctional 5,10-met 100.0 1.7E-38 3.7E-43 321.2 8.4 107 1-114 170-278 (278)
26 PRK14186 bifunctional 5,10-met 100.0 3.5E-38 7.5E-43 321.5 9.8 115 1-117 170-286 (297)
27 PRK14168 bifunctional 5,10-met 100.0 5.1E-38 1.1E-42 320.3 10.3 117 1-117 173-295 (297)
28 PRK14190 bifunctional 5,10-met 100.0 7.2E-38 1.6E-42 317.6 9.4 111 1-117 170-282 (284)
29 PRK14177 bifunctional 5,10-met 100.0 9.3E-38 2E-42 316.6 8.9 107 1-117 171-279 (284)
30 PRK14183 bifunctional 5,10-met 100.0 1.2E-37 2.6E-42 315.3 9.7 110 1-116 169-280 (281)
31 PRK14193 bifunctional 5,10-met 100.0 3.4E-37 7.4E-42 312.6 9.9 109 1-116 170-282 (284)
32 PRK14173 bifunctional 5,10-met 100.0 4E-37 8.6E-42 312.5 10.0 116 1-119 167-284 (287)
33 PRK14184 bifunctional 5,10-met 100.0 1.3E-36 2.8E-41 308.6 8.7 110 1-117 169-284 (286)
34 PRK14191 bifunctional 5,10-met 100.0 2E-36 4.2E-41 307.2 9.3 113 1-119 169-283 (285)
35 PRK14189 bifunctional 5,10-met 100.0 2.2E-36 4.9E-41 306.9 9.7 111 1-117 170-282 (285)
36 PRK14174 bifunctional 5,10-met 100.0 2.5E-36 5.5E-41 307.8 10.0 117 1-117 171-293 (295)
37 PRK14176 bifunctional 5,10-met 100.0 3.3E-36 7.1E-41 305.7 8.5 109 1-116 176-286 (287)
38 PRK10792 bifunctional 5,10-met 100.0 4.1E-36 8.9E-41 304.8 8.4 112 1-118 171-284 (285)
39 PRK14179 bifunctional 5,10-met 100.0 2.5E-35 5.4E-40 299.1 10.1 111 1-117 170-282 (284)
40 PRK14178 bifunctional 5,10-met 100.0 1.4E-34 3E-39 293.0 7.7 109 1-116 164-274 (279)
41 PRK14175 bifunctional 5,10-met 100.0 2.7E-34 5.8E-39 292.0 8.4 111 1-117 170-282 (286)
42 KOG0089|consensus 100.0 3.5E-34 7.6E-39 285.9 8.8 118 1-118 178-307 (309)
43 PRK14194 bifunctional 5,10-met 100.0 1.2E-33 2.7E-38 288.7 10.5 117 1-120 171-289 (301)
44 PRK14188 bifunctional 5,10-met 100.0 4.1E-33 9E-38 284.5 10.3 117 1-117 170-289 (296)
45 PRK14192 bifunctional 5,10-met 100.0 3.3E-32 7.1E-37 276.4 8.0 110 1-117 171-282 (283)
46 cd05212 NAD_bind_m-THF_DH_Cycl 100.0 1.8E-30 3.9E-35 239.5 8.1 98 1-113 40-139 (140)
47 cd01079 NAD_bind_m-THF_DH NAD 100.0 9.1E-30 2E-34 246.1 8.6 99 1-117 74-196 (197)
48 cd01080 NAD_bind_m-THF_DH_Cycl 99.9 1.6E-24 3.5E-29 205.3 7.5 111 1-114 56-168 (168)
49 PRK08306 dipicolinate synthase 98.7 4.7E-08 1E-12 100.4 7.7 102 1-116 163-288 (296)
50 TIGR02853 spore_dpaA dipicolin 98.1 3E-06 6.6E-11 87.0 6.0 98 1-112 162-283 (287)
51 PTZ00075 Adenosylhomocysteinas 97.5 7.2E-05 1.6E-09 82.0 3.4 89 1-91 265-371 (476)
52 cd05191 NAD_bind_amino_acid_DH 96.2 0.0053 1.1E-07 51.8 3.8 46 1-58 34-85 (86)
53 PF00670 AdoHcyase_NAD: S-aden 96.1 0.0061 1.3E-07 58.6 3.9 61 1-61 34-112 (162)
54 TIGR00518 alaDH alanine dehydr 95.1 0.072 1.6E-06 56.9 8.3 91 23-118 223-324 (370)
55 PRK14982 acyl-ACP reductase; P 93.6 0.13 2.9E-06 54.7 6.2 40 24-63 209-250 (340)
56 PF02423 OCD_Mu_crystall: Orni 93.3 0.087 1.9E-06 54.9 4.2 41 22-62 184-227 (313)
57 PRK05476 S-adenosyl-L-homocyst 92.8 0.094 2E-06 57.4 3.6 62 1-62 223-302 (425)
58 PF01488 Shikimate_DH: Shikima 92.7 0.11 2.3E-06 47.5 3.4 61 2-62 24-112 (135)
59 PLN02928 oxidoreductase family 92.7 0.14 2.9E-06 54.4 4.6 61 1-61 170-264 (347)
60 PRK06823 ornithine cyclodeamin 92.6 0.1 2.2E-06 54.7 3.5 41 22-62 184-225 (315)
61 cd01078 NAD_bind_H4MPT_DH NADP 92.1 0.62 1.4E-05 44.5 8.0 39 25-63 92-133 (194)
62 PRK06407 ornithine cyclodeamin 92.0 0.14 3E-06 53.3 3.6 41 22-62 174-215 (301)
63 PRK07589 ornithine cyclodeamin 91.8 0.15 3.2E-06 54.3 3.7 41 22-62 185-228 (346)
64 TIGR02992 ectoine_eutC ectoine 91.5 0.16 3.6E-06 53.1 3.5 41 22-62 186-227 (326)
65 TIGR00936 ahcY adenosylhomocys 91.1 0.21 4.6E-06 54.4 4.0 62 1-62 206-285 (406)
66 TIGR01327 PGDH D-3-phosphoglyc 90.9 1.1 2.3E-05 50.2 9.4 63 1-63 149-233 (525)
67 TIGR02371 ala_DH_arch alanine 90.9 0.21 4.5E-06 52.4 3.5 41 22-62 184-225 (325)
68 PRK06436 glycerate dehydrogena 90.7 0.33 7.2E-06 50.7 4.8 63 1-63 133-213 (303)
69 COG5322 Predicted dehydrogenas 90.5 0.52 1.1E-05 49.3 5.9 37 26-62 227-264 (351)
70 PF02826 2-Hacid_dh_C: D-isome 89.9 0.42 9.1E-06 45.5 4.4 61 1-61 47-129 (178)
71 PRK13243 glyoxylate reductase; 89.9 0.42 9.1E-06 50.3 4.8 63 1-63 161-244 (333)
72 PRK15469 ghrA bifunctional gly 89.8 0.34 7.4E-06 50.7 4.1 62 1-62 147-229 (312)
73 PRK07574 formate dehydrogenase 89.5 1.4 3E-05 47.7 8.5 120 1-120 203-360 (385)
74 PRK08605 D-lactate dehydrogena 89.4 0.56 1.2E-05 49.3 5.3 63 1-63 157-240 (332)
75 PRK12480 D-lactate dehydrogena 89.3 0.36 7.8E-06 50.9 3.8 62 1-62 157-237 (330)
76 PF03446 NAD_binding_2: NAD bi 88.9 0.48 1.1E-05 44.3 4.0 62 1-62 12-97 (163)
77 PRK08618 ornithine cyclodeamin 88.3 0.44 9.6E-06 49.8 3.6 40 22-62 184-224 (325)
78 PRK13940 glutamyl-tRNA reducta 88.0 0.8 1.7E-05 50.0 5.4 62 2-63 193-277 (414)
79 PRK06932 glycerate dehydrogena 87.7 0.63 1.4E-05 48.7 4.3 62 1-62 158-236 (314)
80 TIGR01692 HIBADH 3-hydroxyisob 86.3 1.3 2.7E-05 45.3 5.6 62 1-62 7-93 (288)
81 PRK13581 D-3-phosphoglycerate 86.3 0.95 2.1E-05 50.6 5.0 63 1-63 151-234 (526)
82 COG2084 MmsB 3-hydroxyisobutyr 86.2 1.2 2.5E-05 46.7 5.3 62 1-62 11-98 (286)
83 PRK08291 ectoine utilization p 86.1 0.65 1.4E-05 48.7 3.4 41 22-62 189-230 (330)
84 PRK06199 ornithine cyclodeamin 86.0 0.56 1.2E-05 50.6 2.9 42 22-63 215-263 (379)
85 PRK08410 2-hydroxyacid dehydro 85.9 1 2.2E-05 47.1 4.7 62 1-62 156-235 (311)
86 PRK07340 ornithine cyclodeamin 85.5 1 2.3E-05 46.8 4.5 41 22-62 180-220 (304)
87 TIGR00561 pntA NAD(P) transhyd 85.5 1.9 4E-05 48.6 6.7 80 24-115 241-336 (511)
88 COG0686 Ald Alanine dehydrogen 85.4 0.44 9.5E-06 50.7 1.7 85 22-110 223-317 (371)
89 COG2423 Predicted ornithine cy 85.3 0.89 1.9E-05 48.4 3.9 42 21-62 186-228 (330)
90 PRK11199 tyrA bifunctional cho 85.3 0.95 2.1E-05 48.4 4.2 60 1-61 110-177 (374)
91 TIGR01035 hemA glutamyl-tRNA r 84.8 0.78 1.7E-05 49.8 3.3 62 1-62 191-280 (417)
92 PLN02494 adenosylhomocysteinas 84.6 1.3 2.7E-05 49.5 4.8 61 1-61 265-343 (477)
93 PRK06487 glycerate dehydrogena 84.4 1.3 2.8E-05 46.4 4.7 62 1-62 159-236 (317)
94 TIGR01724 hmd_rel H2-forming N 84.2 1.4 3E-05 47.1 4.7 61 2-62 32-119 (341)
95 PRK06141 ornithine cyclodeamin 83.3 1.1 2.4E-05 46.7 3.6 40 23-62 182-222 (314)
96 PRK00257 erythronate-4-phospha 83.3 1.6 3.5E-05 47.2 4.9 119 1-119 127-280 (381)
97 PRK00045 hemA glutamyl-tRNA re 83.2 1.3 2.7E-05 48.2 4.1 62 1-62 193-283 (423)
98 PLN00203 glutamyl-tRNA reducta 83.1 1.3 2.8E-05 49.8 4.2 41 23-63 322-373 (519)
99 cd00401 AdoHcyase S-adenosyl-L 82.7 1 2.2E-05 49.2 3.2 61 1-61 213-291 (413)
100 PRK06046 alanine dehydrogenase 82.6 1.2 2.6E-05 46.7 3.5 40 22-62 186-226 (326)
101 PRK11790 D-3-phosphoglycerate 82.5 1.7 3.8E-05 47.2 4.8 60 1-60 162-240 (409)
102 PLN03139 formate dehydrogenase 82.4 1.7 3.6E-05 47.2 4.6 63 1-63 210-295 (386)
103 PRK15438 erythronate-4-phospha 81.6 2 4.4E-05 46.5 4.9 117 1-117 127-278 (378)
104 PRK14619 NAD(P)H-dependent gly 81.3 1.8 3.9E-05 44.7 4.2 59 1-59 15-82 (308)
105 PRK11559 garR tartronate semia 81.3 2.5 5.5E-05 42.9 5.2 62 1-62 13-99 (296)
106 TIGR01505 tartro_sem_red 2-hyd 80.4 2.7 5.9E-05 42.7 5.1 61 1-61 10-95 (291)
107 COG0373 HemA Glutamyl-tRNA red 80.4 1.7 3.7E-05 47.7 3.8 42 22-63 230-278 (414)
108 COG0499 SAM1 S-adenosylhomocys 79.7 2.3 4.9E-05 46.2 4.4 59 1-59 220-296 (420)
109 KOG1494|consensus 78.7 2 4.2E-05 45.4 3.4 42 1-42 40-108 (345)
110 PLN02306 hydroxypyruvate reduc 76.0 3.8 8.2E-05 44.4 4.9 39 22-60 228-273 (386)
111 PRK15461 NADH-dependent gamma- 75.9 3.2 7E-05 42.7 4.2 62 1-62 12-98 (296)
112 PRK15059 tartronate semialdehy 75.8 3.4 7.3E-05 42.7 4.3 62 1-62 11-96 (292)
113 cd05311 NAD_bind_2_malic_enz N 75.5 2.3 4.9E-05 42.5 2.9 39 23-63 90-131 (226)
114 PRK08818 prephenate dehydrogen 75.3 2.4 5.2E-05 45.7 3.2 62 1-62 16-91 (370)
115 cd01065 NAD_bind_Shikimate_DH 75.1 2.5 5.4E-05 38.3 2.8 40 23-62 74-119 (155)
116 COG0370 FeoB Fe2+ transport sy 74.6 6.2 0.00014 45.7 6.3 94 335-436 75-186 (653)
117 PRK15409 bifunctional glyoxyla 74.5 4.5 9.8E-05 42.6 4.9 62 1-62 156-239 (323)
118 PF01262 AlaDh_PNT_C: Alanine 74.3 2.6 5.6E-05 39.8 2.7 41 22-62 94-142 (168)
119 PRK09424 pntA NAD(P) transhydr 73.6 1.9 4E-05 48.5 1.9 34 28-61 246-287 (509)
120 cd05213 NAD_bind_Glutamyl_tRNA 73.4 4.2 9.1E-05 42.3 4.3 39 24-62 232-276 (311)
121 PRK12490 6-phosphogluconate de 72.6 6.1 0.00013 40.7 5.2 62 1-62 11-97 (299)
122 PRK11064 wecC UDP-N-acetyl-D-m 72.0 4.4 9.6E-05 44.0 4.2 62 1-62 14-122 (415)
123 COG3288 PntA NAD/NADP transhyd 71.4 4.5 9.6E-05 43.2 3.9 90 24-119 238-336 (356)
124 TIGR00507 aroE shikimate 5-deh 70.2 4.9 0.00011 40.8 3.8 98 1-118 128-253 (270)
125 COG1052 LdhA Lactate dehydroge 70.1 6.4 0.00014 41.8 4.8 61 1-61 157-238 (324)
126 PRK12557 H(2)-dependent methyl 69.8 5.9 0.00013 42.2 4.5 59 2-60 32-117 (342)
127 COG0287 TyrA Prephenate dehydr 66.2 6.5 0.00014 40.9 3.9 62 1-62 14-101 (279)
128 PRK09599 6-phosphogluconate de 66.0 8.2 0.00018 39.7 4.5 62 1-62 11-97 (301)
129 PLN02350 phosphogluconate dehy 65.5 9 0.00019 43.0 5.0 62 1-62 17-110 (493)
130 COG0111 SerA Phosphoglycerate 63.5 11 0.00024 40.0 5.0 118 1-119 153-308 (324)
131 PRK12549 shikimate 5-dehydroge 63.5 10 0.00022 39.1 4.7 75 24-118 186-266 (284)
132 TIGR03026 NDP-sugDHase nucleot 62.5 9.4 0.0002 41.1 4.4 39 23-61 69-122 (411)
133 TIGR00262 trpA tryptophan synt 62.5 24 0.00051 36.2 7.0 152 306-470 26-203 (256)
134 PRK15452 putative protease; Pr 62.3 35 0.00077 37.8 8.8 139 297-460 3-154 (443)
135 PRK08507 prephenate dehydrogen 61.7 9.4 0.0002 38.7 4.0 60 1-62 11-94 (275)
136 PLN02688 pyrroline-5-carboxyla 59.5 11 0.00023 37.7 3.9 57 1-58 11-94 (266)
137 PRK07502 cyclohexadienyl dehyd 59.5 8 0.00017 39.8 3.1 61 1-61 17-102 (307)
138 PRK08655 prephenate dehydrogen 59.2 7.4 0.00016 42.7 2.9 61 1-61 12-94 (437)
139 PLN02858 fructose-bisphosphate 58.9 11 0.00024 47.3 4.6 114 1-114 15-187 (1378)
140 KOG1370|consensus 58.8 12 0.00026 40.2 4.2 62 1-62 225-304 (434)
141 PRK06545 prephenate dehydrogen 58.1 9.4 0.0002 40.5 3.4 62 1-62 11-98 (359)
142 PRK09287 6-phosphogluconate de 57.8 16 0.00034 40.7 5.1 62 1-62 1-92 (459)
143 PRK07417 arogenate dehydrogena 57.7 6.4 0.00014 40.0 2.0 61 1-62 11-94 (279)
144 TIGR00872 gnd_rel 6-phosphoglu 57.5 9.8 0.00021 39.2 3.3 61 1-62 11-96 (298)
145 PF03720 UDPG_MGDP_dh_C: UDP-g 57.1 10 0.00022 33.3 2.9 56 4-59 21-101 (106)
146 PF03932 CutC: CutC family; I 56.6 51 0.0011 33.0 8.0 121 343-468 24-173 (201)
147 KOG0409|consensus 56.5 9.8 0.00021 40.5 3.1 61 1-61 46-132 (327)
148 COG2085 Predicted dinucleotide 55.8 13 0.00028 37.6 3.7 60 1-61 12-95 (211)
149 PLN02858 fructose-bisphosphate 54.6 12 0.00025 47.1 3.8 62 1-62 335-421 (1378)
150 PRK13111 trpA tryptophan synth 54.2 71 0.0015 32.9 8.9 152 306-470 28-205 (258)
151 PLN02712 arogenate dehydrogena 53.0 14 0.00029 43.0 3.8 61 1-61 380-462 (667)
152 PRK00676 hemA glutamyl-tRNA re 52.3 24 0.00052 37.9 5.3 61 2-62 186-264 (338)
153 PLN02256 arogenate dehydrogena 48.1 22 0.00049 37.2 4.2 61 1-61 47-129 (304)
154 TIGR00873 gnd 6-phosphoglucona 47.4 20 0.00043 40.0 3.9 62 1-62 10-101 (467)
155 COG3414 SgaB Phosphotransferas 46.3 6.3 0.00014 34.8 -0.2 52 427-482 17-68 (93)
156 PRK09554 feoB ferrous iron tra 45.2 45 0.00097 39.6 6.5 82 353-440 110-193 (772)
157 TIGR01915 npdG NADPH-dependent 45.1 18 0.00039 35.4 2.9 58 1-59 12-101 (219)
158 PTZ00142 6-phosphogluconate de 44.6 31 0.00068 38.4 4.9 62 1-62 12-104 (470)
159 PRK03670 competence damage-ind 42.9 1.3E+02 0.0029 30.9 8.8 42 353-400 31-72 (252)
160 cd00762 NAD_bind_malic_enz NAD 42.0 16 0.00035 37.8 2.0 37 22-58 96-140 (254)
161 PRK09260 3-hydroxybutyryl-CoA 41.2 24 0.00053 35.9 3.2 41 21-61 72-120 (288)
162 PF10662 PduV-EutP: Ethanolami 40.8 58 0.0013 30.9 5.4 52 354-407 88-141 (143)
163 PRK14618 NAD(P)H-dependent gly 39.9 27 0.00059 36.2 3.3 39 22-60 66-105 (328)
164 PRK00258 aroE shikimate 5-dehy 39.7 20 0.00044 36.6 2.3 96 2-117 135-259 (278)
165 PRK12491 pyrroline-5-carboxyla 39.6 18 0.0004 37.0 2.0 35 23-58 56-96 (272)
166 KOG0069|consensus 38.9 35 0.00077 36.7 4.0 61 1-61 173-255 (336)
167 PRK15182 Vi polysaccharide bio 38.4 34 0.00073 37.6 3.9 37 26-62 72-123 (425)
168 PLN02591 tryptophan synthase 37.8 2.3E+02 0.0049 29.2 9.5 151 306-470 18-194 (250)
169 TIGR02116 toxin_Txe_YoeB toxin 37.7 19 0.00041 30.1 1.4 53 447-500 1-62 (80)
170 PF00107 ADH_zinc_N: Zinc-bind 37.5 16 0.00035 31.8 1.1 56 7-62 28-92 (130)
171 PF02153 PDH: Prephenate dehyd 37.0 16 0.00035 36.9 1.2 38 25-62 40-82 (258)
172 TIGR02385 RelE_StbE addiction 36.6 43 0.00094 27.1 3.4 50 445-496 2-61 (88)
173 PRK13403 ketol-acid reductoiso 36.5 31 0.00067 37.1 3.1 62 1-62 27-110 (335)
174 PRK00094 gpsA NAD(P)H-dependen 36.2 36 0.00078 34.7 3.5 37 23-59 64-105 (325)
175 COG1959 Predicted transcriptio 35.1 28 0.0006 32.9 2.3 19 150-168 25-43 (150)
176 cd00945 Aldolase_Class_I Class 34.7 3.7E+02 0.008 24.8 9.9 112 355-470 48-177 (201)
177 CHL00200 trpA tryptophan synth 34.4 2.7E+02 0.0059 28.8 9.5 151 306-470 31-207 (263)
178 PF04101 Glyco_tran_28_C: Glyc 34.1 29 0.00064 31.9 2.3 26 16-41 58-83 (167)
179 COG3598 RepA RecA-family ATPas 33.6 94 0.002 34.0 6.1 125 90-230 93-253 (402)
180 COG0012 Predicted GTPase, prob 33.4 1.2E+02 0.0026 33.3 6.9 96 327-445 188-288 (372)
181 TIGR00053 addiction module tox 32.5 25 0.00054 29.7 1.4 55 444-499 3-67 (89)
182 PRK11572 copper homeostasis pr 32.1 3E+02 0.0066 28.6 9.3 91 353-447 49-147 (248)
183 KOG2336|consensus 31.9 24 0.00052 37.5 1.4 28 79-107 76-103 (422)
184 PLN02712 arogenate dehydrogena 31.0 46 0.00099 38.8 3.6 62 1-62 63-146 (667)
185 cd05312 NAD_bind_1_malic_enz N 31.0 28 0.0006 36.6 1.7 38 22-59 95-140 (279)
186 PF10727 Rossmann-like: Rossma 29.4 41 0.00089 31.1 2.4 60 1-60 21-105 (127)
187 PRK08293 3-hydroxybutyryl-CoA 29.3 51 0.0011 33.6 3.2 41 21-61 75-122 (287)
188 PF00290 Trp_syntA: Tryptophan 29.2 98 0.0021 32.1 5.3 150 306-470 26-203 (259)
189 PF03949 Malic_M: Malic enzyme 29.0 26 0.00055 36.4 1.0 29 23-51 97-127 (255)
190 TIGR01809 Shik-DH-AROM shikima 28.9 66 0.0014 33.1 4.0 73 26-118 186-270 (282)
191 PF03721 UDPG_MGDP_dh_N: UDP-g 28.9 53 0.0012 31.9 3.1 15 1-15 11-25 (185)
192 PF11104 PilM_2: Type IV pilus 28.7 16 0.00035 38.3 -0.5 47 152-198 86-132 (340)
193 PRK12548 shikimate 5-dehydroge 28.5 83 0.0018 32.5 4.6 72 27-118 196-275 (289)
194 cd01994 Alpha_ANH_like_IV This 28.1 4.4E+02 0.0096 25.8 9.4 107 371-486 46-157 (194)
195 KOG3007|consensus 27.6 47 0.001 35.3 2.6 40 23-62 200-240 (333)
196 PF10087 DUF2325: Uncharacteri 27.4 80 0.0017 27.2 3.7 36 5-40 15-58 (97)
197 PRK06444 prephenate dehydrogen 26.7 35 0.00076 33.8 1.5 50 1-62 12-62 (197)
198 PF01210 NAD_Gly3P_dh_N: NAD-d 26.7 44 0.00095 31.2 2.1 38 21-58 60-102 (157)
199 PLN02984 oxidoreductase, 2OG-F 26.5 1.5E+02 0.0033 31.7 6.3 64 348-433 30-94 (341)
200 PRK05672 dnaE2 error-prone DNA 26.2 3.4E+02 0.0075 33.6 9.9 149 353-517 190-369 (1046)
201 COG0159 TrpA Tryptophan syntha 25.9 4.5E+02 0.0097 27.6 9.3 151 306-470 33-210 (265)
202 PRK07259 dihydroorotate dehydr 25.7 3.8E+02 0.0082 27.6 8.9 58 353-413 89-154 (301)
203 TIGR00676 fadh2 5,10-methylene 25.3 7.5E+02 0.016 25.4 10.9 115 353-469 56-189 (272)
204 smart00859 Semialdhyde_dh Semi 25.3 41 0.00089 29.6 1.5 35 29-63 64-103 (122)
205 PRK10799 metal-binding protein 24.7 27 0.00059 35.3 0.3 79 154-250 110-196 (247)
206 PF03807 F420_oxidored: NADP o 24.3 34 0.00073 28.6 0.8 36 23-58 54-93 (96)
207 cd02033 BchX Chlorophyllide re 24.0 2.7E+02 0.0058 29.8 7.6 85 354-458 205-291 (329)
208 PLN02912 oxidoreductase, 2OG-F 23.8 1.9E+02 0.0041 31.0 6.4 64 354-433 40-104 (348)
209 PRK13303 L-aspartate dehydroge 23.7 1.6E+02 0.0036 30.0 5.7 132 356-509 86-231 (265)
210 KOG3349|consensus 23.3 76 0.0017 31.0 3.0 29 16-44 66-94 (170)
211 PRK10660 tilS tRNA(Ile)-lysidi 23.2 1.5E+02 0.0032 32.8 5.6 49 355-404 44-96 (436)
212 PRK06476 pyrroline-5-carboxyla 23.0 58 0.0013 32.6 2.3 38 22-60 53-94 (258)
213 PF03599 CdhD: CO dehydrogenas 22.8 2.3E+02 0.005 31.3 6.8 123 327-466 38-173 (386)
214 COG1149 MinD superfamily P-loo 22.6 76 0.0016 33.5 3.0 68 353-440 212-281 (284)
215 PF07287 DUF1446: Protein of u 22.6 1.4E+02 0.0031 32.5 5.2 66 364-434 52-117 (362)
216 PRK09880 L-idonate 5-dehydroge 22.1 74 0.0016 32.8 2.9 50 12-61 213-268 (343)
217 PLN03129 NADP-dependent malic 22.0 70 0.0015 37.0 2.9 38 22-59 391-436 (581)
218 PRK08445 hypothetical protein; 21.4 1.8E+02 0.0039 31.1 5.7 16 452-467 144-159 (348)
219 PLN03139 formate dehydrogenase 21.3 2E+02 0.0042 31.6 6.0 80 6-98 68-155 (386)
220 PRK05096 guanosine 5'-monophos 21.2 4.9E+02 0.011 28.4 8.8 43 346-393 37-79 (346)
221 PRK12550 shikimate 5-dehydroge 20.9 1.3E+02 0.0028 31.1 4.4 97 2-118 134-255 (272)
222 COG3142 CutC Uncharacterized p 20.9 5.3E+02 0.012 26.8 8.5 103 341-448 23-148 (241)
223 TIGR03855 NAD_NadX aspartate d 20.7 2.8E+02 0.006 28.1 6.6 145 297-509 37-195 (229)
224 KOG3361|consensus 20.6 54 0.0012 31.3 1.3 42 479-539 38-80 (157)
225 cd01828 sialate_O-acetylestera 20.4 4.5E+02 0.0098 23.8 7.5 67 296-385 47-126 (169)
226 PF11432 DUF3197: Protein of u 20.4 20 0.00044 32.7 -1.4 35 189-226 14-59 (113)
227 TIGR00436 era GTP-binding prot 20.2 6.2E+02 0.014 25.5 9.1 79 354-438 106-186 (270)
No 1
>KOG4230|consensus
Probab=100.00 E-value=7.3e-191 Score=1501.72 Aligned_cols=532 Identities=53% Similarity=0.865 Sum_probs=521.2
Q ss_pred CchHHHHHHHhCCCe--eecCCCCCHHHHhhhCCEEEEeccCCCceecCcccCCeEEEeccccccCCCccCCCCeeeecc
Q psy7978 1 MWSSLQTFWLWVLAN--PSMSKTKNIQDVVKSADILVVGIGQPEYVKGDWIKPGAVVIDCGINSVPDASKASGQKLVGDV 78 (542)
Q Consensus 1 vgkPLa~LL~~~~AT--icHs~T~nl~~~~k~ADIVIsAvG~p~lI~~d~ik~GavVIDVGin~~~d~~~~~~~kl~GDV 78 (542)
||.|++.||.+.||| +|||+|+||.+++.+|||||+|+|+|+|+++||||||++|||||||+++|.++++|+|++|||
T Consensus 174 VG~Pia~LL~~~NaTVTiCHSKT~~lae~v~~ADIvIvAiG~PefVKgdWiKpGavVIDvGINyvpD~~Kksg~klvGDV 253 (935)
T KOG4230|consen 174 VGSPIAALLLWANATVTICHSKTRNLAEKVSRADIVIVAIGQPEFVKGDWIKPGAVVIDVGINYVPDPSKKSGFKLVGDV 253 (935)
T ss_pred cCChHHHHHHhcCceEEEecCCCccHHHHhccCCEEEEEcCCcceeecccccCCcEEEEccccccCCCCCcccceEeeec
Confidence 799999999999999 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccceEeecCCCCcchhhHHHHHHhHHHHHHHHHhhhcCCCCCCCCCCCCCCCCCCCchHHHhhcCCCCHHHHHH
Q psy7978 79 QYAEAKNVASWITPVPGGVGPMTVAMLMNNTVLSAERYIDRLLKPSWNLHTLPLNLQSPVPSDIDIARAQDPKDINQLAQ 158 (542)
Q Consensus 79 df~~v~~~a~~iTPVPGGVGpmTvamL~~N~v~aa~~~~~~~~~~~W~l~~~~l~~~~~m~sd~eia~~~~~~~I~~ia~ 158 (542)
|||+++++|++||||||||||||+||||+|++++|+|+..+++ ..|.++++.|...+|+||||||+|++++++|.++|+
T Consensus 254 dfe~Akevas~ITPVPGGVGPMTVAMLmqNtveaAKR~r~es~-~~~~i~~~pl~l~tpvpsdidisrsq~pk~i~~la~ 332 (935)
T KOG4230|consen 254 DFESAKEVASFITPVPGGVGPMTVAMLMQNTVEAAKRQREESK-KKRKIDLLPLKLKTPVPSDIDISRSQEPKLIGQLAK 332 (935)
T ss_pred chHhhhhhhhccccCCCCcchHHHHHHHHHHHHHHHHHHHhcc-ccCcCCCCccccCCCCCcccchhhccCcchHHHHHH
Confidence 9999999999999999999999999999999999999987763 589999999999999999999999999999999999
Q ss_pred HcCCCccccccccCceeEechhhhhhhhcCCCCcEEeehH------------------HHHHhhc-ccceeeeecCCCCC
Q psy7978 159 EIGLHVSEVSSYGRSKAKISTEVLDRLKRVQDGKYIILFL------------------KLLLLDF-GYTFACVRQPSQGP 219 (542)
Q Consensus 159 ~lgl~~~~l~~yG~~kAKi~~~~l~~~~~~~~gklilVTa------------------~aL~~~l-~~~~~~lRePSlGP 219 (542)
++||.+.|||.||.|||||++++++|++.|++||||+||+ |||. .| |.+++|+||||+||
T Consensus 333 e~gi~s~ele~yg~~kakv~l~v~erl~hr~dg~yvvvsgitptp~gegkst~t~glvqal~-~l~k~~iacvrqpsqgp 411 (935)
T KOG4230|consen 333 ELGIYSHELELYGHYKAKVNLAVLERLKHRKDGKYVVVSGITPTPLGEGKSTTTAGLVQALG-ALGKLAIACVRQPSQGP 411 (935)
T ss_pred HhchhhHHHHhhcchhhhcCHHHHHHHhccCCCcEEEEeccCCCCCCCCcchhHHHHHHHHH-hhCCcceeeecCCCcCC
Confidence 9999999999999999999999999999999999999999 9997 69 99999999999999
Q ss_pred cccccccCCCCCceeeeeCcccccccccchhhHHHhhHHHHHHHHhhHhccc----------------------------
Q psy7978 220 TFGIKGGAAGGGYSQVIPMEEFNLHLTGDIHAVTAANNLAAAQLDARMFHEA---------------------------- 271 (542)
Q Consensus 220 vFGiKGGAaGGG~sqv~Pme~iNLHfTGD~hAIt~A~NLlaA~iDn~i~~~n---------------------------- 271 (542)
+||+||||||||||||+||||||||+||||||||+|||||||+||.||||+|
T Consensus 412 tfgvkggaagggysq~ipmdefnlhltgdihaitaannllaaaidtrmfhe~tq~daal~krlvp~kng~r~f~~~m~rr 491 (935)
T KOG4230|consen 412 TFGVKGGAAGGGYSQVIPMDEFNLHLTGDIHAITAANNLLAAAIDTRMFHENTQSDAALYKRLVPVKNGKRKFTPSMIRR 491 (935)
T ss_pred ccccccccCCCccceeeehhhcccccccchhhhhhhhHHHHHHHHHHHHhhcccchHHHHHhhccccCCeeecCHHHHHH
Confidence 9999999999999999999999999999999999999999999999999997
Q ss_pred -----------------------CCC---CceEeeeecccc---------------------------------------
Q psy7978 272 -----------------------TQT---DQQLYSRLVPTI--------------------------------------- 286 (542)
Q Consensus 272 -----------------------~l~---d~i~w~R~~d~n--------------------------------------- 286 (542)
+|+ |+|.|+||+|+|
T Consensus 492 lkrl~i~k~dp~~lt~ee~~~farlnidpdtit~~rvldvndrflr~itig~a~tekg~tr~t~fdisvase~mailals 571 (935)
T KOG4230|consen 492 LKRLGIEKTDPEDLTPEEIKKFARLNIDPDTITINRVLDVNDRFLRQITIGQAPTEKGHTRTTGFDISVASECMAILALS 571 (935)
T ss_pred HHHhccccCCcccCCHHHHHHhHcccCCCCeeEEEEEeccchhhhhheecccCccccCcccccccceehHHHHHHHHHHh
Confidence 244 599999999999
Q ss_pred --------------------------------------------------------------------------------
Q psy7978 287 -------------------------------------------------------------------------------- 286 (542)
Q Consensus 287 -------------------------------------------------------------------------------- 286 (542)
T Consensus 572 ~dl~dm~erlgrmvva~dk~g~pvtaedlgv~galtvllkdaikpnlmqtlegtpv~vhagpfanisigassiiadrial 651 (935)
T KOG4230|consen 572 KDLNDMKERLGRMVVAADKYGEPVTAEDLGVSGALTVLLKDAIKPNLMQTLEGTPVFVHAGPFANISIGASSIIADRIAL 651 (935)
T ss_pred ccHHHHHHHhhcEEEeecCCCCcccHHhcCcchhHHHHHHhhcchhHHhhccCCeeEEecccccccccchHHHHHHHHHH
Confidence
Q ss_pred ------------------------------cccccCCCCCCCCEEEEEeeehhhhhcCCCCCCCCCCCCCcccCccCHHH
Q psy7978 287 ------------------------------LNIKCRTSGKIPDAVVLVTTVRALKMHGGGPSVVSGQPLKPEYTENTRAV 336 (542)
Q Consensus 287 ------------------------------~dIKCR~sGl~PdavVlVATvRALK~HGG~~~~~~g~p~~~~l~~en~~a 336 (542)
||||||.|||.||+|||||||||||+|||.|.+.+|+|||++|.+||++.
T Consensus 652 klvgte~~~keagyvvteagf~~dmgmekffnikcr~sgl~p~avvlvatvralk~hgggp~v~pg~plp~~y~~en~dl 731 (935)
T KOG4230|consen 652 KLVGTESRPKEAGYVVTEAGFASDMGMEKFFNIKCRYSGLVPNAVVLVATVRALKLHGGGPKVKPGQPLPEEYTEENLDL 731 (935)
T ss_pred HhcCCCCCcccCceEEEecccccccchhheeeeeeecCCCCCceEEEeehhHHHHhcCCCCCCCCCCCCcHHHHHhhHHH
Confidence 99999999999999999999999999999999999999999999999999
Q ss_pred HhccCCcccccCcccc-----CCCCCcE-EEeCCCCCCHHHHHHHHHHHHHcCCCeEEEccccccCchhHHHHHHHHHHH
Q psy7978 337 LRGEDSFLLYCKLDSQ-----YLEHPPV-TMLIYYTYTPAEWEIIRKAAKQAGAHDAVVCENWAKGGAGAADLADAVIKA 410 (542)
Q Consensus 337 l~~G~~~~~~~NL~~H-----~fGvpvV-AiN~F~tDT~~Ei~~i~~~~~~~G~~~~~v~~~~a~GG~Ga~~LA~~Vv~a 410 (542)
+++| |+||.|| +||+||| |||+|.|||+.||+.|++.+.++|+++++-|+||++||+||++||++|+++
T Consensus 732 v~kg-----~snl~k~i~n~~~fgipvvvain~f~tds~~ei~~ir~~al~aga~dav~snhwaeggkgai~la~av~~a 806 (935)
T KOG4230|consen 732 VEKG-----CSNLVKQIENIKKFGIPVVVAINKFKTDSEKEIEAIREAALEAGAFDAVTSNHWAEGGKGAIELAKAVITA 806 (935)
T ss_pred HHHH-----HHHHHHHHHhHHhcCCCEEEEeccccCCCHHHHHHHHHHHHhcCCcccccccchhhcCccHHHHHHHHHHH
Confidence 9999 9999999 7999999 999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCCcccccCCCCCHHHHHHHHHHHHhcCCceecChHHHHHHHHHHHcCCCCCceeEEccCCCCCCCCCCCCCCCCC
Q psy7978 411 TELKDKQFKYLYDIHDPLLTKIQTVAREMYGVHKVDCPQPVLEKLQKLERLGYGRLTVCMAKTALSLSGDPTIKGVVPPD 490 (542)
Q Consensus 411 ~~~~~~~f~~lY~~~~~l~eKI~~IA~~IYGA~~V~~s~~A~~~l~~~e~~G~~~lPVCmAKTqySlS~dp~~~G~~P~~ 490 (542)
|+.++ +|++|||.+.|+|+||+.||+++|||++|++||+|+++++.|.++||++||||||||||||||||.++|+ |+|
T Consensus 807 ~~~~s-~f~llydv~~~iedk~~~iaqkmyga~~ie~~p~aq~ki~~y~kqgfgnlpiciaktqyslshdp~~kgv-pt~ 884 (935)
T KOG4230|consen 807 CDSPS-KFRLLYDVNSSIEDKLTIIAQKMYGAAGIELSPEAQEKIDTYKKQGFGNLPICIAKTQYSLSHDPELKGV-PTG 884 (935)
T ss_pred hcCCc-ceeEEEecCccHHHHHHHHHHHHcCCccceeCHHHHHHHHHHHhccCCCCceeeeecccccccCccccCC-CCC
Confidence 98776 8999999999999999999999999999999999999999999999999999999999999999999999 999
Q ss_pred ceEEeeEEEeecCCceEEEeecccccCCCCCCCCceeeeeeeCCCCeeeecC
Q psy7978 491 YVLPIHDVYVSAGAGFVVVIAGDISKMPGLGTRPSIYDIDIDTRTGEIEGLF 542 (542)
Q Consensus 491 f~~~vrdv~~~~GAgfiv~~~g~i~tMPGLp~~Paa~~idvd~~~g~i~GL~ 542 (542)
|++||||+|+|+||||+|+|++.|+||||||+.|++++|||| ++|+|.|||
T Consensus 885 ft~pird~r~s~gagflyplaa~iqtipglpt~p~y~~idi~-~~gei~gl~ 935 (935)
T KOG4230|consen 885 FTVPIRDMRLSAGAGFLYPLAAEIQTIPGLPTYPAYMNIDID-ENGEIVGLF 935 (935)
T ss_pred ceeechhhhcccCCcchhhhhHHhhcCCCCCCccceeeeeec-CCCcccccC
Confidence 999999999999999999999999999999999999999999 789999998
No 2
>PRK13507 formate--tetrahydrofolate ligase; Provisional
Probab=100.00 E-value=3.4e-168 Score=1339.66 Aligned_cols=401 Identities=46% Similarity=0.715 Sum_probs=391.6
Q ss_pred CCCCCCCCchHHHhhcC--CCCHHHHHHHcCCCccccccccCceeEechh-hhhhhhcCCCCcEEeehH-----------
Q psy7978 133 NLQSPVPSDIDIARAQD--PKDINQLAQEIGLHVSEVSSYGRSKAKISTE-VLDRLKRVQDGKYIILFL----------- 198 (542)
Q Consensus 133 ~~~~~m~sd~eia~~~~--~~~I~~ia~~lgl~~~~l~~yG~~kAKi~~~-~l~~~~~~~~gklilVTa----------- 198 (542)
++.+|+||||||||+++ |+||++||+++||++|+|||||+|||||+++ ++++++++|+||||||||
T Consensus 2 ~~~~~~~sdieIa~~~~~~~~~I~~ia~~lgl~~~~le~YG~~kAKi~l~~~l~~~~~~~~gklIlVTaitPTP~GEGKt 81 (587)
T PRK13507 2 ALDPTKMKDWEIAEEAEKFMKPVEELAEELGLTKEELLPYGHYIAKVDFRKVLDRLKDRPDGKYIDVTAITPTPLGEGKS 81 (587)
T ss_pred CCCCCCCCHHHHHHhhhccCCCHHHHHHHcCCCHHHHHhcCCcceeecHHHHHHhhccCCCCeEEEEeccCCCCCCCCcc
Confidence 45668899999999999 8999999999999999999999999999998 899998889999999999
Q ss_pred -------HHHHhhc-ccceeeeecCCCCCcccccccCCCCCceeeeeCcccccccccchhhHHHhhHHHHHHHHhhHhcc
Q psy7978 199 -------KLLLLDF-GYTFACVRQPSQGPTFGIKGGAAGGGYSQVIPMEEFNLHLTGDIHAVTAANNLAAAQLDARMFHE 270 (542)
Q Consensus 199 -------~aL~~~l-~~~~~~lRePSlGPvFGiKGGAaGGG~sqv~Pme~iNLHfTGD~hAIt~A~NLlaA~iDn~i~~~ 270 (542)
|||+ |+ |++++|||||||||||||||||||||||||+|||||||||||||||||||||||||+||||||||
T Consensus 82 TttIGL~~aL~-~lgk~~~~~lRePSlGP~FGiKGGAaGGGysQv~Pme~iNLHfTGD~hAitaA~NLlaA~idn~i~~~ 160 (587)
T PRK13507 82 TTTMGLVQGLG-KRGKKVSGAIRQPSGGPTMNIKGSAAGGGLSQCIPLTPFSLGLTGDINAIMNAHNLAMVALTARMQHE 160 (587)
T ss_pred chhhhHHHHHH-hhcCceEEEEecCCcCCcCCcccccCCCccccccchhhccccccChHHHHHHHHHHHHHHHHHHHhcc
Confidence 9997 99 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred c-------------CCC-C--ceEeeeecccc------------------------------------------------
Q psy7978 271 A-------------TQT-D--QQLYSRLVPTI------------------------------------------------ 286 (542)
Q Consensus 271 n-------------~l~-d--~i~w~R~~d~n------------------------------------------------ 286 (542)
| +|+ | +|+|+||||||
T Consensus 161 n~~~~~~l~~~~~~~L~IDp~~I~w~RvlD~NDR~LR~I~vGlG~~~~G~~Re~gFdITvASEiMAIlcLa~~l~Dlk~R 240 (587)
T PRK13507 161 RNYTDEQLARRGLKRLDIDPTRVEMGWIIDFCAQALRNIIIGIGGKTDGYMMQSGFGIAVSSEVMAILSVATDLKDLRER 240 (587)
T ss_pred CccccchhhcccccccCCCcceeeEeecccccchhhhceeeCcCCCCCCccccCCceeeHHHHHHHHHHHcCCHHHHHHH
Confidence 8 888 6 99999999999
Q ss_pred --------------------------------------------------------------------------------
Q psy7978 287 -------------------------------------------------------------------------------- 286 (542)
Q Consensus 287 -------------------------------------------------------------------------------- 286 (542)
T Consensus 241 lg~ivva~~~~g~PVta~DL~~~GAmt~LLkDAikPNLvQTlEgtPa~vHgGPFANIAHG~nSviAt~~ALkladyvVTE 320 (587)
T PRK13507 241 IGKIVVAYDKNGKPVTTADLEVDGAMTAWMVRAINPNLLQTIEGQPVFVHAGPFANIAIGQSSIIADRVGLKLADYHVTE 320 (587)
T ss_pred HhcEEEEEcCCCCeeeHHhccchHhHHHHHHhhcCcceeeecCCCceEEecCCcchhhcccHHHHHHHHHHhcCCeEEec
Confidence
Q ss_pred ------------cccccCCCCCCCCEEEEEeeehhhhhcCCCCCCCCCCCCCcccCccCHHHHhccCCcccccCcccc--
Q psy7978 287 ------------LNIKCRTSGKIPDAVVLVTTVRALKMHGGGPSVVSGQPLKPEYTENTRAVLRGEDSFLLYCKLDSQ-- 352 (542)
Q Consensus 287 ------------~dIKCR~sGl~PdavVlVATvRALK~HGG~~~~~~g~p~~~~l~~en~~al~~G~~~~~~~NL~~H-- 352 (542)
||||||.+|++|||+||||||||||||||++...+|+|||++|.+||+++|++| |+||.||
T Consensus 321 AGFGaDlGaEKF~dIkcr~~gl~P~a~VlVaTvRALK~hgG~~~~~~g~~l~~~l~~enl~al~~G-----~~NL~~Hi~ 395 (587)
T PRK13507 321 SGFGADIGFEKFWNLKCRLSGLKPDCAVIVATIRALKMHGGGPKVVPGKPLPEEYTKENVGLVEKG-----CANLLHHIG 395 (587)
T ss_pred cccCCCCChhheeeeeccccCCCCCEEEEEeEhHHHHHcCCCCccccCCccchhccccCHHHHHHH-----HHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred ---CCCCCcE-EEeCCCCCCHHHHHHHHHHHHHcCCCeEEEccccccCchhHHHHHHHHHHHhccCCCCcccccCCCCCH
Q psy7978 353 ---YLEHPPV-TMLIYYTYTPAEWEIIRKAAKQAGAHDAVVCENWAKGGAGAADLADAVIKATELKDKQFKYLYDIHDPL 428 (542)
Q Consensus 353 ---~fGvpvV-AiN~F~tDT~~Ei~~i~~~~~~~G~~~~~v~~~~a~GG~Ga~~LA~~Vv~a~~~~~~~f~~lY~~~~~l 428 (542)
+||+||| |||+|++||++||++|+++|++.|+. +++|+||++||+|++|||++|+++|++++ +|+|||++++||
T Consensus 396 n~~~fg~pvVVaiN~F~~Dt~~Ei~~l~~~~~~~g~~-~~v~~~wa~GGeGa~eLA~~Vv~a~e~~s-~fk~LYd~~~sI 473 (587)
T PRK13507 396 TVKKSGINPVVCINAFYTDTHAEIAIVRRLAEQAGAR-VAVSRHWEKGGEGALELADAVIDACNEPN-DFKFLYPLEMPL 473 (587)
T ss_pred HHHHcCCCeEEEeCCCCCCCHHHHHHHHHHHHHcCCC-EEEechhhccchhHHHHHHHHHHHhhCcC-CCcccCCCCCCH
Confidence 7999999 99999999999999999999999995 99999999999999999999999998655 899999999999
Q ss_pred HHHHHHHHHHHhcCCceecChHHHHHHHHHHHcC-CCCCceeEEccCCCCCCCCCCCCCCCCCceEEeeEEEeecCCceE
Q psy7978 429 LTKIQTVAREMYGVHKVDCPQPVLEKLQKLERLG-YGRLTVCMAKTALSLSGDPTIKGVVPPDYVLPIHDVYVSAGAGFV 507 (542)
Q Consensus 429 ~eKI~~IA~~IYGA~~V~~s~~A~~~l~~~e~~G-~~~lPVCmAKTqySlS~dp~~~G~~P~~f~~~vrdv~~~~GAgfi 507 (542)
+|||++||++||||++|+||++|++||++||++| |++||||||||||||||||+++|+ |+||+|||||||+|+|||||
T Consensus 474 ~EKIetIAkeIYGAdgVe~S~~A~kqLk~le~~gGfg~LPVCmAKTqyS~S~d~~~~g~-P~gf~~~ir~v~~~~GAGFi 552 (587)
T PRK13507 474 RERIETIAREVYGADGVSYTPEAEAKLKRLESDPETADFGTCMVKTHLSLSHDPALKGV-PKGWTLPIRDILTYGGAGFV 552 (587)
T ss_pred HHHHHHHHHHccCCCceeECHHHHHHHHHHHhcCCCCCCCEEEEecCcCcCCCccccCC-CCCcEEEeeEEEEcCCCCEE
Confidence 9999999999999999999999999999999996 999999999999999999999999 99999999999999999999
Q ss_pred EEeecccccCCCCCCCCceeeeeeeCCCCeeeecC
Q psy7978 508 VVIAGDISKMPGLGTRPSIYDIDIDTRTGEIEGLF 542 (542)
Q Consensus 508 v~~~g~i~tMPGLp~~Paa~~idvd~~~g~i~GL~ 542 (542)
|++||+|||||||||+|+|++||||+++|+|+|||
T Consensus 553 v~l~G~i~tMPGLp~~Paa~~idid~~~G~i~GL~ 587 (587)
T PRK13507 553 VPVAGDISLMPGTGSDPAFRRIDVDTQTGKVKGLF 587 (587)
T ss_pred EEecCCcccCCCCCCCCccccccccCCCCEEeccC
Confidence 99999999999999999999999997799999998
No 3
>PLN02759 Formate--tetrahydrofolate ligase
Probab=100.00 E-value=5.2e-167 Score=1337.25 Aligned_cols=406 Identities=49% Similarity=0.795 Sum_probs=394.3
Q ss_pred CCCCCCCCCCchHHHhhcCCCCHHHHHHHcCCCccccccccCceeEechhhhhhhhcCCCCcEEeehH------------
Q psy7978 131 PLNLQSPVPSDIDIARAQDPKDINQLAQEIGLHVSEVSSYGRSKAKISTEVLDRLKRVQDGKYIILFL------------ 198 (542)
Q Consensus 131 ~l~~~~~m~sd~eia~~~~~~~I~~ia~~lgl~~~~l~~yG~~kAKi~~~~l~~~~~~~~gklilVTa------------ 198 (542)
.+.+..||+|||||||+++|+||++||+++||++|+||+||+|||||++++++|++++|+||||||||
T Consensus 9 ~~~~~~~~~sDieIa~~~~~~~I~~iA~~lgl~~~~le~YG~ykAKi~l~~l~~~~~~~~gklIlVTaitPTP~GEGKTT 88 (637)
T PLN02759 9 KLEVKSPVPADIDIAQSVEPLHISEIAKALGLLPDEYDLYGKYKAKVLLSVRDRLAGAPDGYYVVVAGITPTPLGEGKST 88 (637)
T ss_pred CCCCCCCCCCHHHHHhhCCCcCHHHHHHHcCCChhhhccCCCcceEEcHHHHhhhccCCCCcEEEEEecCCCCCCCCchh
Confidence 35677889999999999999999999999999999999999999999999999998889999999999
Q ss_pred ------HHHHhhc-ccceeeeecCCCCCcccccccCCCCCceeeeeCcccccccccchhhHHHhhHHHHHHHHhhHhccc
Q psy7978 199 ------KLLLLDF-GYTFACVRQPSQGPTFGIKGGAAGGGYSQVIPMEEFNLHLTGDIHAVTAANNLAAAQLDARMFHEA 271 (542)
Q Consensus 199 ------~aL~~~l-~~~~~~lRePSlGPvFGiKGGAaGGG~sqv~Pme~iNLHfTGD~hAIt~A~NLlaA~iDn~i~~~n 271 (542)
|||+.|+ |++++|||||||||||||||||||||||||+|||||||||||||||||||||||||+|||||||||
T Consensus 89 ttIGL~~aL~~~lgk~~~~~lRePSlGP~FGiKGGAaGGGysQv~Pme~iNLHfTGD~hAItaA~NLlaA~idn~i~~~n 168 (637)
T PLN02759 89 TTIGLCQALGAYLDKKVVTCLRQPSQGPTFGIKGGAAGGGYSQVIPMEEFNLHLTGDIHAITAANNLLAAAIDTRVFHEA 168 (637)
T ss_pred HHHHHHHHHHHHhCCeeEEEeecCCcCCcCCcccccCCCcccccccHhhhcccccchHHHHHHHHHHHHHHHHHHHhhcc
Confidence 9997449 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred C----------------------------------------------------CC-C--ceEeeeecccc----------
Q psy7978 272 T----------------------------------------------------QT-D--QQLYSRLVPTI---------- 286 (542)
Q Consensus 272 ~----------------------------------------------------l~-d--~i~w~R~~d~n---------- 286 (542)
+ |+ | +|+|+||||||
T Consensus 169 ~~~~~~l~~~l~p~~~~~~r~~~~~~~~rl~~l~i~~~~p~~lt~~e~~~~~~L~IDp~~I~w~RvlD~NDR~LR~I~vG 248 (637)
T PLN02759 169 TQSDKALFNRLCPANKEGKRSFAAVMFRRLKKLGISKTDPDELTPEERKKFARLDIDPASITWRRVMDVNDRFLRKITVG 248 (637)
T ss_pred ccchhhhhhccccccccccccccHHHHHHHHhhccCcCCccccCHHHhhhhhccCcCcceeEEEeeccccchhhhceeeC
Confidence 7 77 5 99999999999
Q ss_pred --------------------------------------------------------------------------------
Q psy7978 287 -------------------------------------------------------------------------------- 286 (542)
Q Consensus 287 -------------------------------------------------------------------------------- 286 (542)
T Consensus 249 lgg~~~G~~Re~gFdITvASEiMAILcLa~dl~Dlk~Rlg~ivvg~~~~g~pVta~DL~~~GAmt~LLkDAikPNLvQTl 328 (637)
T PLN02759 249 QGPEEKGMTRETGFDITVASEIMAVLALTTSLADMRERLGKMVIGNSKAGEPVTADDLGVGGALTVLMKDAIHPTLMQTL 328 (637)
T ss_pred cCCCCCCCcccCCceeeHHHHHHHHHHHcCCHHHHHHHHhCEEEEEcCCCCceeHHHcCchHhHHHHHHhhhCccceeec
Confidence
Q ss_pred -----------------------------------------------------cccccCCCCCCCCEEEEEeeehhhhhc
Q psy7978 287 -----------------------------------------------------LNIKCRTSGKIPDAVVLVTTVRALKMH 313 (542)
Q Consensus 287 -----------------------------------------------------~dIKCR~sGl~PdavVlVATvRALK~H 313 (542)
||||||.+|++|||+||||||||||||
T Consensus 329 EgtPa~vHgGPFANIAhG~nSviAtk~ALkla~~~dyvVTEAGFGaDlGaEKF~dIkcR~~gl~P~a~VlVaTvRALK~h 408 (637)
T PLN02759 329 EGTPVLVHAGPFANIAHGNSSIVADQIALKLVGPGGFVVTEAGFGADIGTEKFMNIKCRYSGLKPQCAVIVATVRALKMH 408 (637)
T ss_pred CCCceEEecCCcccccccchHHHHHHHHHhhcCCCCeEEEecccCCCCchhheecccccccCCCCCEEEEEeehHHHHhc
Confidence 999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCcccCccCHHHHhccCCcccccCcccc-----CCCCCcE-EEeCCCCCCHHHHHHHHHHHHHcCCCeE
Q psy7978 314 GGGPSVVSGQPLKPEYTENTRAVLRGEDSFLLYCKLDSQ-----YLEHPPV-TMLIYYTYTPAEWEIIRKAAKQAGAHDA 387 (542)
Q Consensus 314 GG~~~~~~g~p~~~~l~~en~~al~~G~~~~~~~NL~~H-----~fGvpvV-AiN~F~tDT~~Ei~~i~~~~~~~G~~~~ 387 (542)
||+++..+|+||+++|.+||+++|++| |+||.|| +||+||| |||+|++||++||++|+++|+++|+.++
T Consensus 409 GG~~~~~pg~~l~~~l~~enl~al~~G-----~~NL~~Hi~n~~~fg~pvVVaiN~F~~Dt~~Ei~~v~~~~~~~ga~~~ 483 (637)
T PLN02759 409 GGGPAVVAGKPLDHAYTTENVELVEAG-----CVNLARHIENTKSYGVNVVVAINMFATDTEAELEAVRQAALAAGAFDA 483 (637)
T ss_pred CCCCcccCCccchhhhcccCHHHHHhh-----hhhHHHHHHHHHHcCCCeEEEecCCCCCCHHHHHHHHHHHHHcCCCcE
Confidence 999999999999999999999999999 9999999 7999999 9999999999999999999999996459
Q ss_pred EEccccccCchhHHHHHHHHHHHhccCCCCcccccCCCCCHHHHHHHHHHHHhcCCceecChHHHHHHHHHHHcCCCCCc
Q psy7978 388 VVCENWAKGGAGAADLADAVIKATELKDKQFKYLYDIHDPLLTKIQTVAREMYGVHKVDCPQPVLEKLQKLERLGYGRLT 467 (542)
Q Consensus 388 ~v~~~~a~GG~Ga~~LA~~Vv~a~~~~~~~f~~lY~~~~~l~eKI~~IA~~IYGA~~V~~s~~A~~~l~~~e~~G~~~lP 467 (542)
++|+||++||+|++|||++|+++|++++++|+|||++++||+|||++||++||||++|+||++|++||++||++||++||
T Consensus 484 ~~~~~wa~GGeGa~eLA~~Vv~a~e~~~s~fk~LYd~~~sI~eKIetIAkeIYGAd~VefS~~AkkqLk~ie~lGfg~LP 563 (637)
T PLN02759 484 VLCTHHAHGGKGAVDLGEAVQKACEGNSQPFKFLYPLDISIKEKIEAIAKESYGADGVEYSEQAEAQIEMYTRQGFSNLP 563 (637)
T ss_pred EEechhhcccHHHHHHHHHHHHHHhcCCCCccccCCCCCCHHHHHHHHHHHccCCCceEECHHHHHHHHHHHHcCCCCCC
Confidence 99999999999999999999999986332799999999999999999999999999999999999999999999999999
Q ss_pred eeEEccCCCCCCCCCCCCCCCCCceEEeeEEEeecCCceEEEeecccccCCCCCCCCceeeeeeeCCCCeeeecC
Q psy7978 468 VCMAKTALSLSGDPTIKGVVPPDYVLPIHDVYVSAGAGFVVVIAGDISKMPGLGTRPSIYDIDIDTRTGEIEGLF 542 (542)
Q Consensus 468 VCmAKTqySlS~dp~~~G~~P~~f~~~vrdv~~~~GAgfiv~~~g~i~tMPGLp~~Paa~~idvd~~~g~i~GL~ 542 (542)
||||||||||||||+++|+ |+||+|||||||+|+||||||++||+|||||||||+|||++||||+++|+|+|||
T Consensus 564 VCmAKTqyS~S~dp~l~G~-P~gf~~~ir~~~~~~GAGFiv~l~G~i~tMPGLp~~Paa~~idid~~~G~i~GL~ 637 (637)
T PLN02759 564 ICMAKTQYSFSHDASLKGA-PSGFTLPIRDVRASVGAGFIYPLVGTMSTMPGLPTRPCFYDIDIDTETGKVLGLS 637 (637)
T ss_pred eeEecCCCCcCCChhhhCC-CCCcEEEeeEEEEcCCCCEEEEecCccccCCCCCCCCcccccccccCCCEEecCC
Confidence 9999999999999999999 9999999999999999999999999999999999999999999997799999998
No 4
>PF01268 FTHFS: Formate--tetrahydrofolate ligase; InterPro: IPR000559 Formate--tetrahydrofolate ligase (6.3.4.3 from EC) (formyltetrahydrofolate synthetase) (FTHFS) is one of the enzymes participating in the transfer of one-carbon units, an essential element of various biosynthetic pathways. In many of these processes the transfers of one-carbon units are mediated by the coenzyme tetrahydrofolate (THF). In eukaryotes the FTHFS activity is expressed by a multifunctional enzyme, C-1-tetrahydrofolate synthase (C1-THF synthase), which also catalyses the dehydrogenase and cyclohydrolase activities. Two forms of C1-THF synthases are known [], one is located in the mitochondrial matrix, while the second one is cytoplasmic. In both forms the FTHFS domain consists of about 600 amino acid residues and is located in the C-terminal section of C1-THF synthase. In prokaryotes FTHFS activity is expressed by a monofunctional homotetrameric enzyme of about 560 amino acid residues []. The crystal structure of N(10)-formyltetrahydrofolate synthetase from Moorella thermoacetica shows that the subunit is composed of three domains organised around three mixed beta-sheets. There are two cavities between adjacent domains. One of them was identified as the nucleotide binding site by homology modelling. The large domain contains a seven-stranded beta-sheet surrounded by helices on both sides. The second domain contains a five-stranded beta-sheet with two alpha-helices packed on one side while the other two are a wall of the active site cavity. The third domain contains a four-stranded beta-sheet forming a half-barrel. The concave side is covered by two helices while the convex side is another wall of the large cavity. Arg 97 is likely involved in formyl phosphate binding. The tetrameric molecule is relatively flat with the shape of the letter X, and the active sites are located at the end of the subunits far from the subunit interface [].; GO: 0004329 formate-tetrahydrofolate ligase activity, 0005524 ATP binding, 0009396 folic acid-containing compound biosynthetic process; PDB: 2EO2_A 3DO6_B 1FPM_A 3RBO_A 3PZX_B 3QB6_A 1FP7_A 3SIN_B 1EG7_A 3QUS_A ....
Probab=100.00 E-value=3.6e-168 Score=1343.20 Aligned_cols=388 Identities=48% Similarity=0.803 Sum_probs=317.1
Q ss_pred CCCchHHHhhcCCCCHHHHHHHcCCCccccccccCceeEechhhhhhhhcCCCCcEEeehH------------------H
Q psy7978 138 VPSDIDIARAQDPKDINQLAQEIGLHVSEVSSYGRSKAKISTEVLDRLKRVQDGKYIILFL------------------K 199 (542)
Q Consensus 138 m~sd~eia~~~~~~~I~~ia~~lgl~~~~l~~yG~~kAKi~~~~l~~~~~~~~gklilVTa------------------~ 199 (542)
|+|||||||+++|+||++||+++||++|+|||||+|||||++++++|++++++|||||||| |
T Consensus 1 m~sd~~ia~~~~~~~i~~ia~~~gl~~~~~~~yG~~kaKi~~~~~~~~~~~~~gklilVTaitPTp~GEGKtTttiGL~~ 80 (557)
T PF01268_consen 1 MKSDIEIAQSAKLKPIEEIAEKLGLPEDDLEPYGRYKAKIDLSVLERLKDKPDGKLILVTAITPTPAGEGKTTTTIGLAQ 80 (557)
T ss_dssp --GGSTTTCTT----HHHHHHCTT--GGGEEEETTTEEEE-TCHHHHTTTS---EEEEEEESS--TTS-SHHHHHHHHHH
T ss_pred CCCHHHHHhcCCCCCHHHHHHHcCCCHHHHHhcCCCCcEeChHHHhhccccCCCcEEEEEecCCCCCCCCceeHHHHHHH
Confidence 7899999999999999999999999999999999999999999999999899999999999 9
Q ss_pred HHHhhc-ccceeeeecCCCCCcccccccCCCCCceeeeeCcccccccccchhhHHHhhHHHHHHHHhhHhcccCCC-C--
Q psy7978 200 LLLLDF-GYTFACVRQPSQGPTFGIKGGAAGGGYSQVIPMEEFNLHLTGDIHAVTAANNLAAAQLDARMFHEATQT-D-- 275 (542)
Q Consensus 200 aL~~~l-~~~~~~lRePSlGPvFGiKGGAaGGG~sqv~Pme~iNLHfTGD~hAIt~A~NLlaA~iDn~i~~~n~l~-d-- 275 (542)
||+ |+ |++++|||||||||||||||||||||||||+|||||||||||||||||||||||||+|||||||||+|+ |
T Consensus 81 al~-~lg~~~~~~lRePSlGP~fG~KGGAaGGG~sqv~Pme~iNLhfTGD~hAIt~A~NLlaA~idn~i~~gn~l~iDp~ 159 (557)
T PF01268_consen 81 ALN-RLGKKAIAALREPSLGPVFGIKGGAAGGGYSQVVPMEDINLHFTGDFHAITAANNLLAAMIDNHIYHGNELNIDPR 159 (557)
T ss_dssp HHH-HTT--EEEEE----CHHHHCST-STTCETTEEEESHHHHHTTTTSHHHHHHHHHHHHHHHHHHHHHTTSTT-EECC
T ss_pred HHH-hcCCceEEEEecCCCCCccCccccccCCceeEEechHHeeccccCcHHHHHHHHHHHHHHHHHHHhccccCCCCcc
Confidence 995 99 999999999999999999999999999999999999999999999999999999999999999999998 5
Q ss_pred ceEeeeecccc---------------------------------------------------------------------
Q psy7978 276 QQLYSRLVPTI--------------------------------------------------------------------- 286 (542)
Q Consensus 276 ~i~w~R~~d~n--------------------------------------------------------------------- 286 (542)
+|+|+||||||
T Consensus 160 ~I~w~Rv~D~NDR~LR~i~iglg~~~~G~~r~~~FdIT~ASEiMAilcLa~~l~Dlk~Rl~~ivv~~~~~~~pvta~dl~ 239 (557)
T PF01268_consen 160 RITWKRVLDMNDRALRNIVIGLGGKANGVPREDGFDITVASEIMAILCLATDLEDLKERLGRIVVAYTKDGKPVTAEDLG 239 (557)
T ss_dssp CE---EEESS--GGGSSEEESTSSCCC---EEE-EEEGGGSHHHHHHHC-SSHHHHHHHHHC-EEEEETTS-EEECHHHT
T ss_pred eeeeeeeccccchhhhheeeCCCCCCCCCcccCceeeEechhhheehhhhcCHHHHHHHHhCEEEEEcCCCCeEEHHHcC
Confidence 99999999999
Q ss_pred -----------------------------------------------------------------------cccccCCCC
Q psy7978 287 -----------------------------------------------------------------------LNIKCRTSG 295 (542)
Q Consensus 287 -----------------------------------------------------------------------~dIKCR~sG 295 (542)
||||||.+|
T Consensus 240 ~~Gam~~LLkdAikPNLvQTlEgtPa~vHgGPFANIAhG~nSviAt~~al~l~dyvvTEAGFGaDlGaEKF~dIkcr~~g 319 (557)
T PF01268_consen 240 AAGAMTALLKDAIKPNLVQTLEGTPAFVHGGPFANIAHGCNSVIATKMALKLADYVVTEAGFGADLGAEKFFDIKCRKSG 319 (557)
T ss_dssp -HHHHHHHTTTTTS-EEEEETTS-EEEE-----SSSS--B--HHHHHHHHHHSSEEEEEBSSSTTTHHHHHHHTHHHHHT
T ss_pred CcHhHHHHHHhhcCchhhhhcccCceEEeccccccccccCchHHHHHHHHhhcceeecccccccccChhhhcCccchhcc
Confidence 999999999
Q ss_pred CCCCEEEEEeeehhhhhcCCCCCCCCCCCCCcccCccCHHHHhccCCcccccCcccc-----CCCCCcE-EEeCCCCCCH
Q psy7978 296 KIPDAVVLVTTVRALKMHGGGPSVVSGQPLKPEYTENTRAVLRGEDSFLLYCKLDSQ-----YLEHPPV-TMLIYYTYTP 369 (542)
Q Consensus 296 l~PdavVlVATvRALK~HGG~~~~~~g~p~~~~l~~en~~al~~G~~~~~~~NL~~H-----~fGvpvV-AiN~F~tDT~ 369 (542)
|+||||||||||||||||||++. ++|.+||+++|++| |+||+|| +||+||| |||+|++||+
T Consensus 320 l~P~~~VlVaTvRALK~HGG~~~--------~~l~~eNl~al~~G-----~~NL~rHIeNik~fGvpvVVAIN~F~tDT~ 386 (557)
T PF01268_consen 320 LKPDAVVLVATVRALKMHGGVAK--------DDLNEENLEALEKG-----FANLERHIENIKKFGVPVVVAINRFPTDTD 386 (557)
T ss_dssp ---SEEEEEEEHHHHHHHTT--G--------GGTTS--HHHHHHH-----HHHHHHHHHHHHCTT--EEEEEE--TTS-H
T ss_pred cCcceEEEeeechHHHhhcCCCc--------cccCccCHHHHHHH-----HHHHHHHHHHHHhcCCCeEEEecCCCCCCH
Confidence 99999999999999999999975 78999999999999 9999999 7999999 9999999999
Q ss_pred HHHHHHHHHHHHcCCCeEEEccccccCchhHHHHHHHHHHHh-ccCCCCcccccCCCCCHHHHHHHHHHHHhcCCceecC
Q psy7978 370 AEWEIIRKAAKQAGAHDAVVCENWAKGGAGAADLADAVIKAT-ELKDKQFKYLYDIHDPLLTKIQTVAREMYGVHKVDCP 448 (542)
Q Consensus 370 ~Ei~~i~~~~~~~G~~~~~v~~~~a~GG~Ga~~LA~~Vv~a~-~~~~~~f~~lY~~~~~l~eKI~~IA~~IYGA~~V~~s 448 (542)
+||++|+++|+++|++ +++|+||++||+|++|||++|+++| +++.++|+|||++++||+|||++||++||||++|+||
T Consensus 387 aEi~~I~~~~~~~Gv~-~avs~~wa~GGeGa~eLA~~Vv~a~ee~~~~~fk~LY~l~~sI~eKIe~IA~eIYGA~~V~~S 465 (557)
T PF01268_consen 387 AEIELIRELCEELGVR-AAVSEHWAKGGEGAVELAEAVVEACEEEEPSNFKPLYDLEDSIEEKIETIATEIYGADGVEYS 465 (557)
T ss_dssp HHHHHHHHHCCCCCEE-EEEC-HHHHGGGGCHHHHHHHHHH-HHHS------SS-TTS-HHHHHHHHHHHTT--SEEEE-
T ss_pred HHHHHHHHHHHhCCCC-EEEechhhcccccHHHHHHHHHHHhhccCCCCcCcccCCcccHHHHHHHHHhhhcCCCcceeC
Confidence 9999999999999996 9999999999999999999999999 3333389999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHcCCCCCceeEEccCCCCCCCCCCCCCCCCCceEEeeEEEeecCCceEEEeecccccCCCCCCCCceee
Q psy7978 449 QPVLEKLQKLERLGYGRLTVCMAKTALSLSGDPTIKGVVPPDYVLPIHDVYVSAGAGFVVVIAGDISKMPGLGTRPSIYD 528 (542)
Q Consensus 449 ~~A~~~l~~~e~~G~~~lPVCmAKTqySlS~dp~~~G~~P~~f~~~vrdv~~~~GAgfiv~~~g~i~tMPGLp~~Paa~~ 528 (542)
++|++||+++|++||++||||||||||||||||+++|+ |+||+|||||||+|+||||||++||+|||||||||+|||++
T Consensus 466 ~~A~kqLk~~e~~Gf~~LPVCmAKTqySlSdDp~l~G~-P~~f~i~Vrdv~~saGAGFvv~l~G~I~tMPGLpk~Paa~~ 544 (557)
T PF01268_consen 466 PKAKKQLKKIEKLGFGNLPVCMAKTQYSLSDDPKLKGA-PTGFTIPVRDVRISAGAGFVVALTGDIMTMPGLPKRPAAEN 544 (557)
T ss_dssp HHHHHHHHHHHHCTTTTS-EEEES-SSSSSSSTT--SS---S-EEEE-EEEEETTTCEEEECSSTTTSS----SS-GGGC
T ss_pred HHHHHHHHHHHhcCCCcCceEEecCCCCccCCCcccCC-CCCcEEEEeEEEEcCCCcEEEEEeccccccCCCCCCcccee
Confidence 99999999999999999999999999999999999999 99999999999999999999999999999999999999999
Q ss_pred eeeeCCCCeeeecC
Q psy7978 529 IDIDTRTGEIEGLF 542 (542)
Q Consensus 529 idvd~~~g~i~GL~ 542 (542)
|||| ++|+|+|||
T Consensus 545 idid-~~G~I~GLf 557 (557)
T PF01268_consen 545 IDID-EDGNIVGLF 557 (557)
T ss_dssp -EEC-TTTEECS--
T ss_pred CCCC-CCCCEecCC
Confidence 9999 799999998
No 5
>PTZ00386 formyl tetrahydrofolate synthetase; Provisional
Probab=100.00 E-value=2.8e-165 Score=1321.87 Aligned_cols=398 Identities=51% Similarity=0.816 Sum_probs=386.0
Q ss_pred CCCCCCCCCCCchHHHhhcCCCCHHHHHHHcCCCccccccccCceeEechhhhhhhhcCCCCcEEeehH-----------
Q psy7978 130 LPLNLQSPVPSDIDIARAQDPKDINQLAQEIGLHVSEVSSYGRSKAKISTEVLDRLKRVQDGKYIILFL----------- 198 (542)
Q Consensus 130 ~~l~~~~~m~sd~eia~~~~~~~I~~ia~~lgl~~~~l~~yG~~kAKi~~~~l~~~~~~~~gklilVTa----------- 198 (542)
.++.+..||+|||||||+++|+||++||+++||++|||||||+|||||++++++|++++|+||||||||
T Consensus 7 ~~~~~~~~~~sDieIa~~~~~~~I~~iA~~lgl~~~~le~YG~ykAKv~l~~~~~~~~~~~gklIlVTaitPTP~GEGKt 86 (625)
T PTZ00386 7 RKLSCQWPVPSDIDIAQSVKPQPITSVAESAGILLSELDPYGSTRAKVKLSVLKRLENSPNGKYVVVAGMNPTPLGEGKS 86 (625)
T ss_pred CCCCCCCCCCCHHHHHhhCCCcCHHHHHHHcCCCHHHHHhcCCcceecCHHHHHhhccCCCCcEEEEeecCCCCCCCCcc
Confidence 357788899999999999999999999999999999999999999999999999998889999999999
Q ss_pred -------HHHHhhc-ccceeeeecCCCCCcccccccCCCCCceeeeeCcccccccccchhhHHHhhHHHHHHHHhhHhcc
Q psy7978 199 -------KLLLLDF-GYTFACVRQPSQGPTFGIKGGAAGGGYSQVIPMEEFNLHLTGDIHAVTAANNLAAAQLDARMFHE 270 (542)
Q Consensus 199 -------~aL~~~l-~~~~~~lRePSlGPvFGiKGGAaGGG~sqv~Pme~iNLHfTGD~hAIt~A~NLlaA~iDn~i~~~ 270 (542)
|||++|+ |++++|||||||||||||||||||||||||+|||||||||||||||||||||||||+||||||||
T Consensus 87 TttIGL~~aL~~~lgk~~~~~lRePSlGP~FGiKGGAaGGGysQv~Pme~iNLHfTGD~HAItaA~NLlaA~iDn~i~~~ 166 (625)
T PTZ00386 87 TTTIGLAQSLGAHLHRKTFACIRQPSQGPTFGIKGGAAGGGYSQVIPMEDFNLHGTGDIHAITAANNLLAAALDTRIFHE 166 (625)
T ss_pred chhhhhHHHHHHHhCcceEEEEecCCcCCcCCcccccCCCccccccchhhccccccchHHHHHHHHHHHHHHHHHHHhhc
Confidence 9997689 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cC------------------------------------------------CC-C--ceEeeeecccc-------------
Q psy7978 271 AT------------------------------------------------QT-D--QQLYSRLVPTI------------- 286 (542)
Q Consensus 271 n~------------------------------------------------l~-d--~i~w~R~~d~n------------- 286 (542)
|+ |+ | +|+|+||||||
T Consensus 167 n~~~d~~l~~~l~~~~r~~~~~~~~rl~~lgi~~~~p~~lt~ee~~~~~~L~IDp~~I~w~Rv~D~NDR~LR~I~vGlG~ 246 (625)
T PTZ00386 167 RTQSDAALYRRLTDELKKFTPIMLKRLEKLGISKTDPKQLTEEERVRFARLDIDPDTISWRRVTDVNDRMLREITIGQGK 246 (625)
T ss_pred cccchhHHHhhhccccccccHHHHHHHHhhccCcCCccccCHHHhhhhhhcCcCcceeEEEeeccccchhhhceeeCcCC
Confidence 98 76 5 99999999999
Q ss_pred --------------------------------------------------------------------------------
Q psy7978 287 -------------------------------------------------------------------------------- 286 (542)
Q Consensus 287 -------------------------------------------------------------------------------- 286 (542)
T Consensus 247 ~~~G~~Re~gFdITvASEiMAIl~La~dl~Dlr~Rlg~ivva~~~~g~pVta~DL~~~GAmt~LLkDAikPNLvQTlEgt 326 (625)
T PTZ00386 247 EEKGITRKTGFDISVASEVMAILALATDLADMRQRLGAIVVAKSKSGEPVTAEDLGCAGAMTVLMKDTIEPTLMQTLEGT 326 (625)
T ss_pred CCCCCcccCCceeEHHHHHHHHHHHhCCHHHHHHHHhceeeeecCCCCceeHHHcCchHHHHHHHHhhcccceeeecCCC
Confidence
Q ss_pred --------------------------------------------------cccccCCCCCCCCEEEEEeeehhhhhcCCC
Q psy7978 287 --------------------------------------------------LNIKCRTSGKIPDAVVLVTTVRALKMHGGG 316 (542)
Q Consensus 287 --------------------------------------------------~dIKCR~sGl~PdavVlVATvRALK~HGG~ 316 (542)
||||||.+|++|||+||||||||||||||+
T Consensus 327 Pa~VHgGPFANIAhG~nSviAt~~ALkla~~~dyvVTEAGFGaDlGaEKF~dIkcR~sgl~P~a~VlVaTvRALK~hGG~ 406 (625)
T PTZ00386 327 PVLVHAGPFGNIAHGNSSIVADQIALKLAGQDGFVLTEAGFGADIGCEKFFNIKCRTSGLKPDAAVLVATVRALKFHGGV 406 (625)
T ss_pred ceEEecCCcchhhcccHHHHHHHHHHHhCCCCCeEEEeccccCCCCchhhccccccccCCCcCEEEEEeehHHHHHhCCC
Confidence 999999999999999999999999999999
Q ss_pred CCCCCCCCCCcccCccCHHHHhccCCcccccCcccc-----CCCCCcE-EEeCCCCCCHHHHHHHHHHHH-HcCCCeEEE
Q psy7978 317 PSVVSGQPLKPEYTENTRAVLRGEDSFLLYCKLDSQ-----YLEHPPV-TMLIYYTYTPAEWEIIRKAAK-QAGAHDAVV 389 (542)
Q Consensus 317 ~~~~~g~p~~~~l~~en~~al~~G~~~~~~~NL~~H-----~fGvpvV-AiN~F~tDT~~Ei~~i~~~~~-~~G~~~~~v 389 (542)
++ .++.+||+++|++| |+||.|| +||+||| |||+|++||++||++|+++|+ ++|+.++++
T Consensus 407 ~~--------~~l~~enl~al~~G-----~~NL~~Hien~~~fgvpvVVAIN~F~tDT~~Ei~~i~~~~~~~~ga~~~~~ 473 (625)
T PTZ00386 407 EP--------VVAGKENLEAVRKG-----LSNLQRHIQNIRKFGVPVVVALNKFSTDTDAELELVKELALQEGGAADVVV 473 (625)
T ss_pred Cc--------cccCccCHHHHHHH-----HHHHHHHHHHHHHcCCCeEEEecCCCCCCHHHHHHHHHHHHHhcCCccEEE
Confidence 86 66778999999999 9999999 7999999 999999999999999999999 999545999
Q ss_pred ccccccCchhHHHHHHHHHHHhcc-CCCCcccccCCCCCHHHHHHHHHHHHhcCCceecChHHHHHHHHHHHcCCCCCce
Q psy7978 390 CENWAKGGAGAADLADAVIKATEL-KDKQFKYLYDIHDPLLTKIQTVAREMYGVHKVDCPQPVLEKLQKLERLGYGRLTV 468 (542)
Q Consensus 390 ~~~~a~GG~Ga~~LA~~Vv~a~~~-~~~~f~~lY~~~~~l~eKI~~IA~~IYGA~~V~~s~~A~~~l~~~e~~G~~~lPV 468 (542)
|+||++||+|++|||++|+++|++ ++ +|+|||++++||+|||++||++||||++|+||++|++||++||++||++|||
T Consensus 474 s~~~a~GG~Ga~eLA~~Vv~a~~~~~s-~fk~LYd~~~sI~eKIetIAkeIYGA~gVefS~~AkkqLk~ie~~G~~~LPV 552 (625)
T PTZ00386 474 TDHWAKGGAGAVDLAQALIRVTENVPS-NFKLLYPLDASLKEKIETICKEIYGAAGVEYLNDADEKLEDFERMGYGKFPV 552 (625)
T ss_pred echhhccchhHHHHHHHHHHHHhcCCC-CCcccCCCCCCHHHHHHHHHHHccCCCcEEECHHHHHHHHHHHHcCCCCCCe
Confidence 999999999999999999999985 45 8999999999999999999999999999999999999999999999999999
Q ss_pred eEEccCCCCCCCCCCCCCCCCCceEEeeEEEeecCCceEEEeecccccCCCCCCCCceeeeeeeCCCCeeeecC
Q psy7978 469 CMAKTALSLSGDPTIKGVVPPDYVLPIHDVYVSAGAGFVVVIAGDISKMPGLGTRPSIYDIDIDTRTGEIEGLF 542 (542)
Q Consensus 469 CmAKTqySlS~dp~~~G~~P~~f~~~vrdv~~~~GAgfiv~~~g~i~tMPGLp~~Paa~~idvd~~~g~i~GL~ 542 (542)
|||||||||||||+++|+ |+||+|||||||+|+||||||++||+|||||||||+|||++||||+++|+|+|||
T Consensus 553 CmAKTqyS~S~dp~l~G~-P~gf~l~irdv~~~aGAGFiv~l~G~i~tMPGLp~~Paa~~idid~~~G~i~GL~ 625 (625)
T PTZ00386 553 CMAKTQYSFSHDPELRGA-PTGFTVPIRDVRVNCGAGFVFPLLGDISTMPGLPTRPAFYNIDIDCETGKIVGLS 625 (625)
T ss_pred EEeccCCCcCCChhhcCC-CCCCEEEeeEEEEcCCCCEEEEecCCcccCCCCCCCCCceeccccCCCCEEeccC
Confidence 999999999999999999 9999999999999999999999999999999999999999999997799999998
No 6
>COG2759 MIS1 Formyltetrahydrofolate synthetase [Nucleotide transport and metabolism]
Probab=100.00 E-value=2.4e-164 Score=1277.68 Aligned_cols=386 Identities=45% Similarity=0.778 Sum_probs=379.1
Q ss_pred CchHHHhhcCCCCHHHHHHHcCCCccccccccCceeEechhhhhhhhcCCCCcEEeehH------------------HHH
Q psy7978 140 SDIDIARAQDPKDINQLAQEIGLHVSEVSSYGRSKAKISTEVLDRLKRVQDGKYIILFL------------------KLL 201 (542)
Q Consensus 140 sd~eia~~~~~~~I~~ia~~lgl~~~~l~~yG~~kAKi~~~~l~~~~~~~~gklilVTa------------------~aL 201 (542)
|||||||+++|+||+|||+++||+.|+||+||+||||||++.+++++.+++|||||||| |||
T Consensus 1 sDieIa~~~~~k~I~~ia~k~Gl~~d~lelYG~ykAKi~~~~~~~l~~k~~gKlILVTaitPTPaGEGKsTttiGL~~al 80 (554)
T COG2759 1 SDIEIARAATMKPIEEIAEKLGLSADDLELYGHYKAKISLEVIKRLKNKPDGKLILVTAITPTPAGEGKTTTTIGLVDAL 80 (554)
T ss_pred ChhhhhhhcccccHHHHHHHcCCCHHHhhhccchhhhcCHHHHHhhccCCCceEEEEEecCCCCCCCCcceeeehHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999 999
Q ss_pred Hhhc-ccceeeeecCCCCCcccccccCCCCCceeeeeCcccccccccchhhHHHhhHHHHHHHHhhHhcccCCC-C--ce
Q psy7978 202 LLDF-GYTFACVRQPSQGPTFGIKGGAAGGGYSQVIPMEEFNLHLTGDIHAVTAANNLAAAQLDARMFHEATQT-D--QQ 277 (542)
Q Consensus 202 ~~~l-~~~~~~lRePSlGPvFGiKGGAaGGG~sqv~Pme~iNLHfTGD~hAIt~A~NLlaA~iDn~i~~~n~l~-d--~i 277 (542)
+ |+ |++++|||||||||||||||||||||||||+|||||||||||||||||+|||||+|+|||||||||+|+ | ||
T Consensus 81 ~-~lgK~~i~alRePSlGP~fGiKGGAaGGGyaqv~PmediNLHfTGD~HAItaAnNllsA~Idnhi~~gn~l~ID~~rI 159 (554)
T COG2759 81 N-KLGKKAIIALREPSLGPVFGIKGGAAGGGYAQVLPMEDINLHFTGDFHAITAANNLLSAAIDNHIYHGNELGIDPRRI 159 (554)
T ss_pred H-hcCchheEEeccCCcCCccccccccCCCceeeeeehhhccccccCchhHHHHHHHHHHHHHHhhhhcCcccCcCcceE
Confidence 6 99 999999999999999999999999999999999999999999999999999999999999999999998 5 99
Q ss_pred Eeeeecccc-----------------------------------------------------------------------
Q psy7978 278 LYSRLVPTI----------------------------------------------------------------------- 286 (542)
Q Consensus 278 ~w~R~~d~n----------------------------------------------------------------------- 286 (542)
+||||||||
T Consensus 160 ~wkRv~DmNDRaLR~I~vglg~~~~G~~RedgFdITvASEiMAIlcLa~dlkDlk~Rl~~iviay~~~~~PV~~~Dl~~~ 239 (554)
T COG2759 160 TWKRVVDMNDRALRSIVVGLGGPENGVPREDGFDITVASEIMAILCLATDLKDLKERLGRIVIAYDYDGKPVTAGDLKVE 239 (554)
T ss_pred EEEeeeccchhhhhheeeccCCccCCcccCCCceeehHHHHHHHHHHhhhHHHHHHHHhheEEEEecCCCceeeeccccc
Confidence 999999999
Q ss_pred ---------------------------------------------------------------------cccccCCCCCC
Q psy7978 287 ---------------------------------------------------------------------LNIKCRTSGKI 297 (542)
Q Consensus 287 ---------------------------------------------------------------------~dIKCR~sGl~ 297 (542)
||||||.+||+
T Consensus 240 GAma~lLkDAikPNLvQTlEgtPa~VHgGPFANIAhGcnSiiAt~~AlkL~dy~VTEAGFgaDlGaEKF~dIK~r~~gl~ 319 (554)
T COG2759 240 GAMAALLKDAIKPNLVQTLEGTPAFVHGGPFANIAHGCNSIIATKTALKLADYVVTEAGFGADLGAEKFFDIKCRSSGLK 319 (554)
T ss_pred hHHHHHHHhhccccceeecCCCceeEecCccchhhccchhHHHHHHHHhhcCeEEEecccccccchhhhcceeccccCCC
Confidence 99999999999
Q ss_pred CCEEEEEeeehhhhhcCCCCCCCCCCCCCcccCccCHHHHhccCCcccccCcccc-----CCCCCcE-EEeCCCCCCHHH
Q psy7978 298 PDAVVLVTTVRALKMHGGGPSVVSGQPLKPEYTENTRAVLRGEDSFLLYCKLDSQ-----YLEHPPV-TMLIYYTYTPAE 371 (542)
Q Consensus 298 PdavVlVATvRALK~HGG~~~~~~g~p~~~~l~~en~~al~~G~~~~~~~NL~~H-----~fGvpvV-AiN~F~tDT~~E 371 (542)
||||||||||||||||||+++ ++|.+||+++|++| |+||.|| +||+|+| |||+|+|||++|
T Consensus 320 PdavVlVATvRALK~hGG~~~--------~~l~~Env~avk~G-----~aNL~~Hi~Nikkfgvp~VVAIN~F~tDt~~E 386 (554)
T COG2759 320 PDAVVLVATVRALKMHGGVPK--------EDLTEENVDAVKKG-----FANLLKHIENIKKFGVPVVVAINKFPTDTEAE 386 (554)
T ss_pred CCeEEEeeehHHHHHcCCCCh--------HHhcchhHHHHHHH-----HHHHHHHHHHHHHcCCCeEEEeccCCCCCHHH
Confidence 999999999999999999984 89999999999999 9999999 7999999 999999999999
Q ss_pred HHHHHHHHHHcCCCeEEEccccccCchhHHHHHHHHHHHhccCCCCcccccCCCCCHHHHHHHHHHHHhcCCceecChHH
Q psy7978 372 WEIIRKAAKQAGAHDAVVCENWAKGGAGAADLADAVIKATELKDKQFKYLYDIHDPLLTKIQTVAREMYGVHKVDCPQPV 451 (542)
Q Consensus 372 i~~i~~~~~~~G~~~~~v~~~~a~GG~Ga~~LA~~Vv~a~~~~~~~f~~lY~~~~~l~eKI~~IA~~IYGA~~V~~s~~A 451 (542)
|+.|+++|++.|+. +++|+||++||+|++|||++|+++|+++.++|++|||.++||++||++||++||||++|+||++|
T Consensus 387 i~~i~~~~~~~gv~-~~ls~vwakGg~Gg~eLA~kVv~~~~~~~~~f~~lYd~~~~i~~Ki~~I~~~iYga~~v~~s~~A 465 (554)
T COG2759 387 IAAIEKLCEEHGVE-VALSEVWAKGGEGGIELAKKVVEAIEQNDSEFKRLYDVEDPIEEKIEKIAKEIYGADGVEFSPKA 465 (554)
T ss_pred HHHHHHHHHHcCCc-eeehhhhhccCccHHHHHHHHHHHHhCCcccceeecccCCcHHHHHHHHHHHhcCCcceeeCHHH
Confidence 99999999999985 99999999999999999999999999743389999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCceeEEccCCCCCCCCCCCCCCCCCceEEeeEEEeecCCceEEEeecccccCCCCCCCCceeeeee
Q psy7978 452 LEKLQKLERLGYGRLTVCMAKTALSLSGDPTIKGVVPPDYVLPIHDVYVSAGAGFVVVIAGDISKMPGLGTRPSIYDIDI 531 (542)
Q Consensus 452 ~~~l~~~e~~G~~~lPVCmAKTqySlS~dp~~~G~~P~~f~~~vrdv~~~~GAgfiv~~~g~i~tMPGLp~~Paa~~idv 531 (542)
++||++++++||++||||||||||||||||+|+|+ |+||++||||+|+|+||||||++||+|||||||||+|+|++|||
T Consensus 466 ~~ql~~~~~~g~d~lPiCmAKTqYS~Sddp~llg~-P~~F~v~Ir~~~~s~GAGFival~g~ImtMPGLpk~Paa~~idv 544 (554)
T COG2759 466 KEQLKTFEKQGFDNLPICMAKTQYSFSDDPSLLGA-PTGFTVPIRELRLSAGAGFIVALTGEIMTMPGLPKKPAAENIDV 544 (554)
T ss_pred HHHHHHHHHhCCCCCceeEecCcccccCCHhhcCC-CCCcEEEeeEeEecCCCceEeeeccccccCCCCCCCcchhceee
Confidence 99999999999999999999999999999999999 99999999999999999999999999999999999999999999
Q ss_pred eCCCCeeeecC
Q psy7978 532 DTRTGEIEGLF 542 (542)
Q Consensus 532 d~~~g~i~GL~ 542 (542)
| ++|+|+|||
T Consensus 545 ~-e~G~i~GLf 554 (554)
T COG2759 545 D-EDGEIVGLF 554 (554)
T ss_pred c-CCCceeccC
Confidence 9 799999998
No 7
>PRK13506 formate--tetrahydrofolate ligase; Provisional
Probab=100.00 E-value=7.8e-160 Score=1277.55 Aligned_cols=395 Identities=45% Similarity=0.699 Sum_probs=385.1
Q ss_pred CCCchHHHhhcCCCCHHHHHHHcCCCccccccccCceeEechhhhhhhhcCCCCcEEeehH------------------H
Q psy7978 138 VPSDIDIARAQDPKDINQLAQEIGLHVSEVSSYGRSKAKISTEVLDRLKRVQDGKYIILFL------------------K 199 (542)
Q Consensus 138 m~sd~eia~~~~~~~I~~ia~~lgl~~~~l~~yG~~kAKi~~~~l~~~~~~~~gklilVTa------------------~ 199 (542)
|+|||||||+++|+||++||+++||++|+||+||+|||||+++++++++.+|+||+|+||+ |
T Consensus 1 m~sdieia~~~~~~~I~~ia~~lgl~~~~l~~YG~~kAKi~~~~~~~~~~~~~~k~IlVTs~~PTp~GEGKTT~si~La~ 80 (578)
T PRK13506 1 MLSDIEISRQAPLKPIAEIAAKLGLLPDELSPFGHTKAKVSLSVLKRLADKPKGKLVLVTAITPTPLGEGKTVTTIGLTQ 80 (578)
T ss_pred CCchHHHHhhCCCCCHHHHHHHcCCCHHHHhhcCCcceecCHHHHHhhccCCCCeEEEEEecCCCCCCCCHHHHHHHHHH
Confidence 7899999999999999999999999999999999999999999999998888999999999 9
Q ss_pred HHHhhc-ccceeeeecCCCCCcccccccCCCCCceeeeeCcccccccccchhhHHHhhHHHHHHHHhhHhcccCC-----
Q psy7978 200 LLLLDF-GYTFACVRQPSQGPTFGIKGGAAGGGYSQVIPMEEFNLHLTGDIHAVTAANNLAAAQLDARMFHEATQ----- 273 (542)
Q Consensus 200 aL~~~l-~~~~~~lRePSlGPvFGiKGGAaGGG~sqv~Pme~iNLHfTGD~hAIt~A~NLlaA~iDn~i~~~n~l----- 273 (542)
+|+ ++ ++++.|||||||||+||+||||+|||||||+|||||||||||||||||||||||||+|||||||||+|
T Consensus 81 ~la-~~Gk~~i~~LR~Pslg~~fg~kgga~GGGlsqvlpme~iNLHfTGD~hAItaA~NLlaA~iDn~i~~gn~~~~~~~ 159 (578)
T PRK13506 81 GLN-ALGQKVCACIRQPSMGPVFGVKGGAAGGGYAQVVPMEELNLHLTGDIHAVSAAHNLAAAAIDARLFHEQRLGYDAF 159 (578)
T ss_pred HHH-HhCCceEEEeccCCcCCccCCCCCCCCCCeeeeeeHhhccccccChHHHHHHHHHHHHHHHHHHHhccCccCccch
Confidence 996 99 99999999999999999999999999999999999999999999999999999999999999999883
Q ss_pred ---------C-C--ceEeeeecccc-------------------------------------------------------
Q psy7978 274 ---------T-D--QQLYSRLVPTI------------------------------------------------------- 286 (542)
Q Consensus 274 ---------~-d--~i~w~R~~d~n------------------------------------------------------- 286 (542)
+ | +|+|+||||||
T Consensus 160 ~~~~~~~~l~IDp~~I~w~Rv~DmNDR~LR~I~vglg~~~~G~~Re~gFdITvASEiMAIlcLa~dl~Dlk~Rl~~ivv~ 239 (578)
T PRK13506 160 EAQSGLPALDIDPEQILWKRVVDHNDRALRMITVGLGENGNGPEREDGFDITAASELMAILALSRDLKDMRQRIGRLVLA 239 (578)
T ss_pred hhhccccccCcCcCeeEEeecccccchhhhceeeCcCCCCCCCcccCCceeeHHHHHHHHHHHcCCHHHHHHHhhcEEEE
Confidence 3 4 99999999999
Q ss_pred --------------------------------------------------------------------------------
Q psy7978 287 -------------------------------------------------------------------------------- 286 (542)
Q Consensus 287 -------------------------------------------------------------------------------- 286 (542)
T Consensus 240 ~~~~g~pVta~DL~~~GAm~~LLkDAikPNLvQTlEgtPa~vHgGPFANIAhG~nSviAt~~aLklaDyvVTEAGFGaDl 319 (578)
T PRK13506 240 YNLQGQPITAEDLGVAGAMTVIMKDAIEPTLMQTLEGVPCLIHAGPFANIAHGNSSIIADRIALKLADYVVTEGGFGSDM 319 (578)
T ss_pred EcCCCCceeHHHccchHhHHHHHHHhccchhheecCCCeeEEecCCcccccccchHHHHHHHHHhhcCeEEeeccccCCC
Confidence
Q ss_pred -----cccccCCCCCCCCEEEEEeeehhhhhcCCCCCCCCCCCCCcccCccCHHHHhccCCcccccCcccc-----CCCC
Q psy7978 287 -----LNIKCRTSGKIPDAVVLVTTVRALKMHGGGPSVVSGQPLKPEYTENTRAVLRGEDSFLLYCKLDSQ-----YLEH 356 (542)
Q Consensus 287 -----~dIKCR~sGl~PdavVlVATvRALK~HGG~~~~~~g~p~~~~l~~en~~al~~G~~~~~~~NL~~H-----~fGv 356 (542)
||||||.+|++|||+||||||||||||||+.....|+|||++|.+||+++|++| |+||.|| +||+
T Consensus 320 GaEKF~dIkcr~~gl~P~a~VlVaTvRALK~hGG~~~~~~g~pl~~~l~~en~~al~~G-----~~NL~~Hi~n~~~fg~ 394 (578)
T PRK13506 320 GFEKFCNIKARQSGKAPDCAVLVATLRALKANSGLYDLRPGQALPDSINAPDQARLEAG-----FANLKWHINNVAQYGL 394 (578)
T ss_pred CCceeeeeeeccCCCCCceEEEEEEeehHHhcCCCCCcccCcccchhccccCHHHHHHH-----HHHHHHHHHHHHHcCC
Confidence 999999999999999999999999999998888999999999999999999999 9999999 7999
Q ss_pred CcE-EEeCCCCCCHHHHHHHHHHHHH-cCCCeEEEccccccCchhHHHHHHHHHHHhccCCCCcccccCCCCCHHHHHHH
Q psy7978 357 PPV-TMLIYYTYTPAEWEIIRKAAKQ-AGAHDAVVCENWAKGGAGAADLADAVIKATELKDKQFKYLYDIHDPLLTKIQT 434 (542)
Q Consensus 357 pvV-AiN~F~tDT~~Ei~~i~~~~~~-~G~~~~~v~~~~a~GG~Ga~~LA~~Vv~a~~~~~~~f~~lY~~~~~l~eKI~~ 434 (542)
||| |||+|++||++||++|+++|++ .|+ ++++|+||++||+|++|||++|+++|++++ +|+|||++++||+|||++
T Consensus 395 pvVVaiN~F~~Dt~~Ei~~~~~~~~~~~~~-~~~~~~~wa~GGeGa~eLA~~Vv~a~e~~s-~fk~LYd~~~sI~eKIet 472 (578)
T PRK13506 395 PVVVAINRFPTDTDEELEWLKEAVLLTGAF-GCEISEAFAQGGEGATALAQAVVRACEQPS-QFKLLYPDEMSLEAKLMT 472 (578)
T ss_pred CeEEEecCCCCCCHHHHHHHHHHHHHcCCC-cEEEechhhccchhHHHHHHHHHHHhhCcC-CCcccCCCCCCHHHHHHH
Confidence 999 9999999999999999999999 466 599999999999999999999999998655 899999999999999999
Q ss_pred HHHHHhcCCceecChHHHHHHHHHHHcCCCCCceeEEccCCCCCCCCCCCCCCCCCceEEeeEEEeecCCceEEEeeccc
Q psy7978 435 VAREMYGVHKVDCPQPVLEKLQKLERLGYGRLTVCMAKTALSLSGDPTIKGVVPPDYVLPIHDVYVSAGAGFVVVIAGDI 514 (542)
Q Consensus 435 IA~~IYGA~~V~~s~~A~~~l~~~e~~G~~~lPVCmAKTqySlS~dp~~~G~~P~~f~~~vrdv~~~~GAgfiv~~~g~i 514 (542)
||++||||++|+||++|++||++||++||++||||||||||||||||+++|+ |+||+|||||||+|+||||||++||+|
T Consensus 473 IAkeIYGA~gVefS~~A~kqLk~ie~~Gf~~LPVCmAKTq~S~S~d~~l~g~-P~~f~~~ir~~~~~~GAgfiv~~~g~i 551 (578)
T PRK13506 473 LAEVGYGAAGVSLSDKAKQQLAQLTALGYDHLPVCMAKTPLSISHDPALKGA-PTDFEVPIRELRLCAGAGFITALVGNV 551 (578)
T ss_pred HHHHccCCCceEECHHHHHHHHHHHHcCCCCCCEEEEecCCccCCChhhcCC-CCCcEEEeeEEEEcCCCCEEEEecCcc
Confidence 9999999999999999999999999999999999999999999999999999 999999999999999999999999999
Q ss_pred ccCCCCCCCCceeeeeeeCCCCeeeecC
Q psy7978 515 SKMPGLGTRPSIYDIDIDTRTGEIEGLF 542 (542)
Q Consensus 515 ~tMPGLp~~Paa~~idvd~~~g~i~GL~ 542 (542)
||||||||+|||++|||| ++|+|+|||
T Consensus 552 ~tMPGLp~~Paa~~idid-~~g~i~Gl~ 578 (578)
T PRK13506 552 MTMPGLGLKPGYLNIDID-ADGEIVGLS 578 (578)
T ss_pred ccCCCCCCCCccccCccC-CCCcEecCC
Confidence 999999999999999999 799999998
No 8
>PRK13505 formate--tetrahydrofolate ligase; Provisional
Probab=100.00 E-value=7.8e-154 Score=1234.14 Aligned_cols=388 Identities=41% Similarity=0.712 Sum_probs=379.8
Q ss_pred CCCCchHHHhhcCCCCHHHHHHHcCCCccccccccCceeEechhhhhhhhcCCCCcEEeehH------------------
Q psy7978 137 PVPSDIDIARAQDPKDINQLAQEIGLHVSEVSSYGRSKAKISTEVLDRLKRVQDGKYIILFL------------------ 198 (542)
Q Consensus 137 ~m~sd~eia~~~~~~~I~~ia~~lgl~~~~l~~yG~~kAKi~~~~l~~~~~~~~gklilVTa------------------ 198 (542)
+|+|||||||+++|+||++||+++||++|+||+||+|||||+++.+++++.+|++|+|+||+
T Consensus 1 ~~~sd~eia~~~~~~~i~~ia~~~gl~~~~~e~Yg~~kaki~~~~~~~~~~~~~~k~IlVTS~~PTp~GEGKTt~sinLA 80 (557)
T PRK13505 1 TMKSDIEIAQEATLKPITEIAAKLGIPEDDLEPYGKYKAKISLDKIKALKDKKDGKLILVTAINPTPAGEGKSTVTVGLG 80 (557)
T ss_pred CCCChHHHHhhCCCcCHHHHHHHcCCCHHHHHhccCcceeeCHHHHhhhccCCCCeEEEEecCCCCCCCCCHHHHHHHHH
Confidence 48999999999999999999999999999999999999999999999988888999999999
Q ss_pred HHHHhhc-ccceeeeecCCCCCcccccccCCCCCceeeeeCcccccccccchhhHHHhhHHHHHHHHhhHhcccCCC-C-
Q psy7978 199 KLLLLDF-GYTFACVRQPSQGPTFGIKGGAAGGGYSQVIPMEEFNLHLTGDIHAVTAANNLAAAQLDARMFHEATQT-D- 275 (542)
Q Consensus 199 ~aL~~~l-~~~~~~lRePSlGPvFGiKGGAaGGG~sqv~Pme~iNLHfTGD~hAIt~A~NLlaA~iDn~i~~~n~l~-d- 275 (542)
|+|+ ++ ++++++||||||||+||+||||||||||||+|||||||||||||||||||||||||+|||||||||+|+ |
T Consensus 81 ~~la-~~GkkvlliLR~Psl~~~fg~kggaaGGG~~qvlpme~inLhftGD~hAit~A~NLlaA~idn~i~~gn~l~id~ 159 (557)
T PRK13505 81 DALN-KIGKKTVIALREPSLGPVFGIKGGAAGGGYAQVVPMEDINLHFTGDFHAITSANNLLAALIDNHIHQGNELGIDP 159 (557)
T ss_pred HHHH-HcCCeEEEEEecCCcccccCCCCCcCCCCceeeecHhHccccccChHHHHHHHHHHHHHHHHHHHhccCccCCCc
Confidence 9996 89 999999999999999999999999999999999999999999999999999999999999999999998 6
Q ss_pred -ceEeeeecccc--------------------------------------------------------------------
Q psy7978 276 -QQLYSRLVPTI-------------------------------------------------------------------- 286 (542)
Q Consensus 276 -~i~w~R~~d~n-------------------------------------------------------------------- 286 (542)
+|+|+||||||
T Consensus 160 ~~i~w~Rv~D~NDR~LR~i~iglg~~~~G~~re~gFdIT~ASEiMAilcLa~~l~Dl~~Rl~~ivv~~~~~~~pvt~~dl 239 (557)
T PRK13505 160 RRITWKRVLDMNDRALRNIVVGLGGPANGVPREDGFDITVASEIMAILCLATDLKDLKERLGRIVVGYTYDGKPVTVKDL 239 (557)
T ss_pred ceeEEEecccccchhhhceEeccCCCCCCCcccCCceeeHHHHHHHHHHHhCCHHHHHHHHhCEEEEEcCCCCceeHHHc
Confidence 99999999999
Q ss_pred ------------------------------------------------------------------------cccccCCC
Q psy7978 287 ------------------------------------------------------------------------LNIKCRTS 294 (542)
Q Consensus 287 ------------------------------------------------------------------------~dIKCR~s 294 (542)
||||||.+
T Consensus 240 ~~~GAm~~lLkdAi~PnLvQTle~tPa~vHgGPFANIAhG~nSviAt~~al~ladyvvTEaGFGaDlGaEKF~dIkcr~~ 319 (557)
T PRK13505 240 KVEGAMALLLKDAIKPNLVQTLEGTPAFVHGGPFANIAHGCNSVLATKTALKLADYVVTEAGFGADLGAEKFLDIKCRKA 319 (557)
T ss_pred CchHHHHHHHHhhcccceeeecCCCceEEecCCcchhhcccHHHHHHHHHHhhCCEEEecccccCCCCCceeeeeecccC
Confidence 99999999
Q ss_pred CCCCCEEEEEeeehhhhhcCCCCCCCCCCCCCcccCccCHHHHhccCCcccccCcccc-----CCCCCcE-EEeCCCCCC
Q psy7978 295 GKIPDAVVLVTTVRALKMHGGGPSVVSGQPLKPEYTENTRAVLRGEDSFLLYCKLDSQ-----YLEHPPV-TMLIYYTYT 368 (542)
Q Consensus 295 Gl~PdavVlVATvRALK~HGG~~~~~~g~p~~~~l~~en~~al~~G~~~~~~~NL~~H-----~fGvpvV-AiN~F~tDT 368 (542)
||+|||+||||||||||||||+++ ++|.+||+|++++| +.||+|| +||+|+| |||+|++||
T Consensus 320 gl~P~~~VlVaTvraLK~hgg~~~--------~~l~~en~Eal~sG-----l~NL~RHIenvr~FGvPvVVAINKFd~DT 386 (557)
T PRK13505 320 GLKPDAVVIVATVRALKMHGGVAK--------DDLKEENVEALKKG-----FANLERHIENIRKFGVPVVVAINKFVTDT 386 (557)
T ss_pred CCCCCEEEEEeehHHHHHcCCCCh--------hhccccCHHHHHHH-----HHHHHHHHHHHHHcCCCEEEEEeCCCCCC
Confidence 999999999999999999999985 88999999999999 9999999 7999999 999999999
Q ss_pred HHHHHHHHHHHHHcCCCeEEEccccccCchhHHHHHHHHHHHhcc-CCCCcccccCCCCCHHHHHHHHHHHHhcCCceec
Q psy7978 369 PAEWEIIRKAAKQAGAHDAVVCENWAKGGAGAADLADAVIKATEL-KDKQFKYLYDIHDPLLTKIQTVAREMYGVHKVDC 447 (542)
Q Consensus 369 ~~Ei~~i~~~~~~~G~~~~~v~~~~a~GG~Ga~~LA~~Vv~a~~~-~~~~f~~lY~~~~~l~eKI~~IA~~IYGA~~V~~ 447 (542)
++|+++|+++|++.|+. +++|+||++||+|+++||++|++++++ ++ +|+|+|++++|++|||++||++||||++|+|
T Consensus 387 e~Ei~~I~~~c~e~Gv~-va~~~~~~~Gg~Gai~LA~aVveA~~~~~s-~f~~lY~~d~sl~eKIe~IAkkIYGA~~V~~ 464 (557)
T PRK13505 387 DAEIAALKELCEELGVE-VALSEVWAKGGEGGVELAEKVVELIEEGES-NFKPLYDDEDSLEEKIEKIATKIYGAKGVEF 464 (557)
T ss_pred HHHHHHHHHHHHHcCCC-EEEecccccCCcchHHHHHHHHHHHhcCCC-CCceecCCCCcHHHHHHHHHHHccCCCCeeE
Confidence 99999999999999995 999999999999999999999999986 44 7999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHcCCCCCceeEEccCCCCCCCCCCCCCCCCCceEEeeEEEeecCCceEEEeecccccCCCCCCCCcee
Q psy7978 448 PQPVLEKLQKLERLGYGRLTVCMAKTALSLSGDPTIKGVVPPDYVLPIHDVYVSAGAGFVVVIAGDISKMPGLGTRPSIY 527 (542)
Q Consensus 448 s~~A~~~l~~~e~~G~~~lPVCmAKTqySlS~dp~~~G~~P~~f~~~vrdv~~~~GAgfiv~~~g~i~tMPGLp~~Paa~ 527 (542)
|++|++||++||++||++||||||||||||||||+++|+ |+||+|||||||+|+||||||++||+|||||||||+|||+
T Consensus 465 s~~A~kqL~~~e~~Gf~~lPVCmAKTqyS~s~d~~~~g~-p~~f~~~ir~~~~~~GAgfiv~~~g~i~tmPGLp~~Paa~ 543 (557)
T PRK13505 465 SPKAKKQLKQIEKNGWDKLPVCMAKTQYSFSDDPKLLGA-PTGFTITVRELRPSAGAGFIVALTGDIMTMPGLPKVPAAL 543 (557)
T ss_pred CHHHHHHHHHHHHcCCCCCCeEEEccCCCcCCChhhhCC-CCCcEEEeeEEEEcCCCCEEEEecCCcccCCCCCCCCccc
Confidence 999999999999999999999999999999999999999 9999999999999999999999999999999999999999
Q ss_pred eeeeeCCCCeeeecC
Q psy7978 528 DIDIDTRTGEIEGLF 542 (542)
Q Consensus 528 ~idvd~~~g~i~GL~ 542 (542)
+|||| ++|+|+|||
T Consensus 544 ~idid-~~g~i~gl~ 557 (557)
T PRK13505 544 NIDVD-EDGNIVGLF 557 (557)
T ss_pred ccccC-CCCceecCC
Confidence 99999 799999998
No 9
>cd00477 FTHFS Formyltetrahydrofolate synthetase (FTHFS) catalyzes the ATP-dependent activation of formate ion via its addition to the N10 position of tetrahydrofolate. FTHFS is a highly expressed key enzyme in both the Wood-Ljungdahl pathway of autotrophic CO2 fixation (acetogenesis) and the glycine synthase/reductase pathways of purinolysis. The key physiological role of this enzyme in acetogens is to catalyze the formylation of tetrahydrofolate, an initial step in the reduction of carbon dioxide and other one-carbon precursors to acetate. In purinolytic organisms, the enzymatic reaction is reversed, liberating formate from 10-formyltetrahydrofolate with concurrent production of ATP.
Probab=100.00 E-value=2.7e-147 Score=1172.55 Aligned_cols=355 Identities=50% Similarity=0.834 Sum_probs=347.0
Q ss_pred HHHHHHcCCCccccccccCceeEechhhhhhhhcCCCCcEEeehH------------------HHHHhhc-ccceeeeec
Q psy7978 154 NQLAQEIGLHVSEVSSYGRSKAKISTEVLDRLKRVQDGKYIILFL------------------KLLLLDF-GYTFACVRQ 214 (542)
Q Consensus 154 ~~ia~~lgl~~~~l~~yG~~kAKi~~~~l~~~~~~~~gklilVTa------------------~aL~~~l-~~~~~~lRe 214 (542)
++||+++||++|+|||||+|||||+++++++++++|+||||+||| |+|+ ++ ++++++|||
T Consensus 1 ~~ia~~lgl~~~~~~~yG~~kaKi~~~~~~~~~~~~~~k~IlVTs~~PTp~GEGKTT~si~La~~la-~~Gkk~l~~LR~ 79 (524)
T cd00477 1 EEIAKELGLLEDELEPYGKYKAKVDLDVLKRLEKRPDGKLILVTAITPTPAGEGKTTTTIGLAQALN-AHGKKAIACLRE 79 (524)
T ss_pred ChhHHHcCCCHHHHHhccCcceeecHHHHhhhccCCCCeEEEEEeCCCCCCCCCHHHHHHHHHHHHH-HhCCcEEEEEec
Confidence 379999999999999999999999999999998889999999999 9996 99 999999999
Q ss_pred CCCCCcccccccCCCCCceeeeeCcccccccccchhhHHHhhHHHHHHHHhhHhcccCCC-C--ceEeeeecccc-----
Q psy7978 215 PSQGPTFGIKGGAAGGGYSQVIPMEEFNLHLTGDIHAVTAANNLAAAQLDARMFHEATQT-D--QQLYSRLVPTI----- 286 (542)
Q Consensus 215 PSlGPvFGiKGGAaGGG~sqv~Pme~iNLHfTGD~hAIt~A~NLlaA~iDn~i~~~n~l~-d--~i~w~R~~d~n----- 286 (542)
|||||+||+||||||||||||+|||||||||||||||||||||||||+|||||||+|+|+ | +|+|+||||||
T Consensus 80 PSlg~~fg~kggaaGGG~sqvlpme~iNLhfTGD~hAItaA~NLlaA~iDn~i~~gn~l~iDp~~I~w~Rv~D~NDR~LR 159 (524)
T cd00477 80 PSLGPTFGIKGGAAGGGYSQVIPMEEINLHFTGDIHAITAANNLLAAAIDNHIHHGNRLDIDPRRITWKRVLDVNDRALR 159 (524)
T ss_pred CCcCcccCCCCCCCCCChhhcccHhhhcccccchHHHHHHHHHHHHHHHHHHHhcccccCCCcceeEEEecccccchhhh
Confidence 999999999999999999999999999999999999999999999999999999999998 6 99999999999
Q ss_pred --------------------------------------------------------------------------------
Q psy7978 287 -------------------------------------------------------------------------------- 286 (542)
Q Consensus 287 -------------------------------------------------------------------------------- 286 (542)
T Consensus 160 ~iviglGg~~~G~~re~gFdITvASEiMAIlcLa~~l~DLk~Rl~~ivv~~~~~g~PVta~DL~~~GAmt~LLkdAikPN 239 (524)
T cd00477 160 KIVIGLGGKENGVPRETGFDITVASEIMAILCLATDLEDLKERLGRIVVAYSKDGEPVTAEDLGVAGAMAVLLKDAIKPN 239 (524)
T ss_pred ceEeccCCCCCCccccCCceeeHHHHHHHHHHHcCCHHHHHHHHhCEEEEEcCCCCcEeHHHcCchHhHHHHHHhhhCcc
Confidence
Q ss_pred -------------------------------------------------------cccccCCCCCCCCEEEEEeeehhhh
Q psy7978 287 -------------------------------------------------------LNIKCRTSGKIPDAVVLVTTVRALK 311 (542)
Q Consensus 287 -------------------------------------------------------~dIKCR~sGl~PdavVlVATvRALK 311 (542)
||||||.+||+|||+||||||||||
T Consensus 240 LvQTlEgtPa~vHgGPFANIAhGcnSviAtk~al~laDyvVTEAGFGaDlGaEKF~dIkcr~~gl~P~a~VlVaTvRALK 319 (524)
T cd00477 240 LVQTLEGTPAFVHGGPFANIAHGCNSIIADKIALKLADYVVTEAGFGADLGAEKFFNIKCRYSGLKPDAVVLVATVRALK 319 (524)
T ss_pred ceeecCCCceEEecCCcccccccchHHHHHHHHHhhcCeEEeeccccCCCCCceeeeeeeccCCCCCCEEEEEEehHHHH
Confidence 9999999999999999999999999
Q ss_pred hcCCCCCCCCCCCCCcccC-ccCHHHHhccCCcccccCcccc-----CCCCCcE-EEeCCCCCCHHHHHHHHHHHHHcCC
Q psy7978 312 MHGGGPSVVSGQPLKPEYT-ENTRAVLRGEDSFLLYCKLDSQ-----YLEHPPV-TMLIYYTYTPAEWEIIRKAAKQAGA 384 (542)
Q Consensus 312 ~HGG~~~~~~g~p~~~~l~-~en~~al~~G~~~~~~~NL~~H-----~fGvpvV-AiN~F~tDT~~Ei~~i~~~~~~~G~ 384 (542)
||||+++ +++. +||+++|++| ++||.|| +||+||| |||+|++|||+||++|+++|++.|+
T Consensus 320 ~hGG~~~--------~~l~~~en~~al~~G-----~~NL~~Hi~n~~~fg~p~VVaiN~F~~Dt~~Ei~~v~~~~~~~g~ 386 (524)
T cd00477 320 MHGGVPK--------VTLGLEENLEALEKG-----FANLRKHIENIKKFGVPVVVAINKFSTDTDAELALVRKLAEEAGA 386 (524)
T ss_pred HhCCCCc--------ccCCCccCHHHHHhH-----HHHHHHHHHHHHHcCCCeEEEecCCCCCCHHHHHHHHHHHHHcCC
Confidence 9999986 6677 9999999999 9999999 7999999 9999999999999999999999999
Q ss_pred CeEEEccccccCchhHHHHHHHHHHHhccCCCCcccccCCCCCHHHHHHHHHHHHhcCCceecChHHHHHHHHHHHcCCC
Q psy7978 385 HDAVVCENWAKGGAGAADLADAVIKATELKDKQFKYLYDIHDPLLTKIQTVAREMYGVHKVDCPQPVLEKLQKLERLGYG 464 (542)
Q Consensus 385 ~~~~v~~~~a~GG~Ga~~LA~~Vv~a~~~~~~~f~~lY~~~~~l~eKI~~IA~~IYGA~~V~~s~~A~~~l~~~e~~G~~ 464 (542)
+ +++|+||++||+|+++||++|+++|++++ +|+|||++++||+|||++||++||||++|+||++|++||++||++||+
T Consensus 387 ~-~~~~~~~~~GG~Ga~eLA~~Vi~a~e~~s-~fk~LY~~~~si~eKIetIAk~IYGA~~V~~S~~A~kqLk~ie~~Gfg 464 (524)
T cd00477 387 F-VAVSEHWAEGGKGAVELAEAVIEACEQPS-EFKFLYDLEDPLEDKIETIAKKIYGADGVELSPKAKKKLARYEKQGFG 464 (524)
T ss_pred C-EEEehhhhhhhhhHHHHHHHHHHHhcCCC-CCccccCCCCCHHHHHHHHHHHccCCCceeECHHHHHHHHHHHHcCCC
Confidence 6 99999999999999999999999998665 899999999999999999999999999999999999999999999999
Q ss_pred CCceeEEccCCCCCCCCCCCCCCCCCceEEeeEEEeecCCceEEEeecccccCCCCCCCCc
Q psy7978 465 RLTVCMAKTALSLSGDPTIKGVVPPDYVLPIHDVYVSAGAGFVVVIAGDISKMPGLGTRPS 525 (542)
Q Consensus 465 ~lPVCmAKTqySlS~dp~~~G~~P~~f~~~vrdv~~~~GAgfiv~~~g~i~tMPGLp~~Pa 525 (542)
+||||||||||||||||+++|+ |+||+|||||||+|+||||||++||+|||||||||+|+
T Consensus 465 ~LPvCmAKTqyS~S~d~~~~g~-P~~f~~~vr~~~~~~GAgfiv~l~g~i~tMPGLp~~Pa 524 (524)
T cd00477 465 NLPVCMAKTQYSLSDDPSLKGA-PTGFTLPIRDVRLSAGAGFIVALTGDIMTMPGLPKRPA 524 (524)
T ss_pred CCCeEEEcCCCCcCCCccccCC-CCCcEEEeeEEEEcCCCCEEEEecCCcccCCCCCCCCC
Confidence 9999999999999999999999 99999999999999999999999999999999999997
No 10
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=100.00 E-value=2.3e-40 Score=333.85 Aligned_cols=112 Identities=53% Similarity=0.789 Sum_probs=107.8
Q ss_pred CchHHHHHHHhCCCe--eecCCCCCHHHHhhhCCEEEEeccCCCceecCcccCCeEEEeccccccCCCccCCCCeeeecc
Q psy7978 1 MWSSLQTFWLWVLAN--PSMSKTKNIQDVVKSADILVVGIGQPEYVKGDWIKPGAVVIDCGINSVPDASKASGQKLVGDV 78 (542)
Q Consensus 1 vgkPLa~LL~~~~AT--icHs~T~nl~~~~k~ADIVIsAvG~p~lI~~d~ik~GavVIDVGin~~~d~~~~~~~kl~GDV 78 (542)
||||||+||+++||| +|||+|+|+.+++|+|||||+|+|+|+||++||||||++|||||||++++ +|+||||
T Consensus 168 VGkPla~lL~~~naTVtvcHs~T~~l~~~~k~ADIvv~AvG~p~~i~~d~vk~gavVIDVGinrv~~------~kl~GDV 241 (283)
T COG0190 168 VGKPLALLLLNANATVTVCHSRTKDLASITKNADIVVVAVGKPHFIKADMVKPGAVVIDVGINRVND------GKLVGDV 241 (283)
T ss_pred CcHHHHHHHHhCCCEEEEEcCCCCCHHHHhhhCCEEEEecCCccccccccccCCCEEEecCCccccC------CceEeec
Confidence 799999999999999 99999999999999999999999999999999999999999999999864 2899999
Q ss_pred ccccccccceEeecCCCCcchhhHHHHHHhHHHHHHHHHh
Q psy7978 79 QYAEAKNVASWITPVPGGVGPMTVAMLMNNTVLSAERYID 118 (542)
Q Consensus 79 df~~v~~~a~~iTPVPGGVGpmTvamL~~N~v~aa~~~~~ 118 (542)
||++++++|+|||||||||||||+||||+||+++++++..
T Consensus 242 df~~v~~~a~~iTPVPGGVGPmTvamLl~Nt~~a~~~~~~ 281 (283)
T COG0190 242 DFDSVKEKASAITPVPGGVGPMTVAMLLENTLKAAERQRG 281 (283)
T ss_pred cHHHHHHhhcccCCCCCccCHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999998754
No 11
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=100.00 E-value=5.5e-40 Score=340.79 Aligned_cols=118 Identities=52% Similarity=0.782 Sum_probs=110.5
Q ss_pred CchHHHHHHHhCCCe--eecCCCCCHHHHhhhCCEEEEeccCCCceecCcccCCeEEEeccccccCCCccCCCCeeeecc
Q psy7978 1 MWSSLQTFWLWVLAN--PSMSKTKNIQDVVKSADILVVGIGQPEYVKGDWIKPGAVVIDCGINSVPDASKASGQKLVGDV 78 (542)
Q Consensus 1 vgkPLa~LL~~~~AT--icHs~T~nl~~~~k~ADIVIsAvG~p~lI~~d~ik~GavVIDVGin~~~d~~~~~~~kl~GDV 78 (542)
||||||+||+++||| +|||+|+||++++++|||||+|+|+|+||++||||||++|||||||+++++++++|+|+||||
T Consensus 243 VGkPLa~LL~~~~ATVTicHs~T~nl~~~~r~ADIVIsAvGkp~~i~~d~vK~GAvVIDVGIn~~~~~~~~~g~klvGDV 322 (364)
T PLN02616 243 VGMPAALLLQREDATVSIVHSRTKNPEEITREADIIISAVGQPNMVRGSWIKPGAVVIDVGINPVEDASSPRGYRLVGDV 322 (364)
T ss_pred ccHHHHHHHHHCCCeEEEeCCCCCCHHHHHhhCCEEEEcCCCcCcCCHHHcCCCCEEEeccccccccccccCCCeEEecC
Confidence 799999999999999 999999999999999999999999999999999999999999999997554444566899999
Q ss_pred ccccccccceEeecCCCCcchhhHHHHHHhHHHHHHHHHh
Q psy7978 79 QYAEAKNVASWITPVPGGVGPMTVAMLMNNTVLSAERYID 118 (542)
Q Consensus 79 df~~v~~~a~~iTPVPGGVGpmTvamL~~N~v~aa~~~~~ 118 (542)
||++++++|+|||||||||||||++|||+|+++++++...
T Consensus 323 dfe~v~~~as~ITPVPGGVGpmTva~Ll~N~~~aa~~~~~ 362 (364)
T PLN02616 323 CYEEACKVASAVTPVPGGVGPMTIAMLLSNTLTSAKRIHN 362 (364)
T ss_pred cHHHHHhhccccCCCCCchHHHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999977643
No 12
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=100.00 E-value=9.9e-40 Score=337.49 Aligned_cols=117 Identities=45% Similarity=0.690 Sum_probs=110.0
Q ss_pred CchHHHHHHHhCCCe--eecCCCCCHHHHhhhCCEEEEeccCCCceecCcccCCeEEEeccccccCCCccCCCCeeeecc
Q psy7978 1 MWSSLQTFWLWVLAN--PSMSKTKNIQDVVKSADILVVGIGQPEYVKGDWIKPGAVVIDCGINSVPDASKASGQKLVGDV 78 (542)
Q Consensus 1 vgkPLa~LL~~~~AT--icHs~T~nl~~~~k~ADIVIsAvG~p~lI~~d~ik~GavVIDVGin~~~d~~~~~~~kl~GDV 78 (542)
||||||+||+++||| +|||+|+|+++++++|||||+|+|+|+||++||||+|++|||||||+++++++++|+|+||||
T Consensus 226 VGkPla~LL~~~~ATVTicHs~T~nl~~~~~~ADIvIsAvGkp~~v~~d~vk~GavVIDVGin~~~~~~~~~g~klvGDV 305 (345)
T PLN02897 226 VGLPMSLLLQRHDATVSTVHAFTKDPEQITRKADIVIAAAGIPNLVRGSWLKPGAVVIDVGTTPVEDSSCEFGYRLVGDV 305 (345)
T ss_pred ccHHHHHHHHHCCCEEEEEcCCCCCHHHHHhhCCEEEEccCCcCccCHHHcCCCCEEEEccccccccccccCCCeeEecc
Confidence 799999999999999 999999999999999999999999999999999999999999999997554444566999999
Q ss_pred ccccccccceEeecCCCCcchhhHHHHHHhHHHHHHHHH
Q psy7978 79 QYAEAKNVASWITPVPGGVGPMTVAMLMNNTVLSAERYI 117 (542)
Q Consensus 79 df~~v~~~a~~iTPVPGGVGpmTvamL~~N~v~aa~~~~ 117 (542)
||++++++|+|||||||||||||++|||+|+++++++++
T Consensus 306 dfe~v~~~as~iTPVPGGVGpmTvamLm~N~~~a~~~~~ 344 (345)
T PLN02897 306 CYEEALGVASAITPVPGGVGPMTITMLLCNTLDAAKRIF 344 (345)
T ss_pred cHHHHHhhccccCCCCCchhHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999997754
No 13
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=100.00 E-value=1.7e-39 Score=330.53 Aligned_cols=116 Identities=44% Similarity=0.732 Sum_probs=109.1
Q ss_pred CchHHHHHHHhC----CCe--eecCCCCCHHHHhhhCCEEEEeccCCCceecCcccCCeEEEeccccccCCCccCCCCee
Q psy7978 1 MWSSLQTFWLWV----LAN--PSMSKTKNIQDVVKSADILVVGIGQPEYVKGDWIKPGAVVIDCGINSVPDASKASGQKL 74 (542)
Q Consensus 1 vgkPLa~LL~~~----~AT--icHs~T~nl~~~~k~ADIVIsAvG~p~lI~~d~ik~GavVIDVGin~~~d~~~~~~~kl 74 (542)
||||||+||+++ ||| +|||+|+||++++++|||||+|+|+|+||++||||+|++|||||||++.+..+++|+|+
T Consensus 169 VGkPla~lL~~~~~~~~aTVtvchs~T~nl~~~~~~ADIvIsAvGkp~~i~~~~vk~gavVIDvGin~~~~~~~~~g~kl 248 (293)
T PRK14185 169 VGKPMAQLMMQKAYPGDCTVTVCHSRSKNLKKECLEADIIIAALGQPEFVKADMVKEGAVVIDVGTTRVPDATRKSGFKL 248 (293)
T ss_pred chHHHHHHHHcCCCCCCCEEEEecCCCCCHHHHHhhCCEEEEccCCcCccCHHHcCCCCEEEEecCcccccccccCCCee
Confidence 799999999998 799 99999999999999999999999999999999999999999999999755445556689
Q ss_pred eeccccccccccceEeecCCCCcchhhHHHHHHhHHHHHHHH
Q psy7978 75 VGDVQYAEAKNVASWITPVPGGVGPMTVAMLMNNTVLSAERY 116 (542)
Q Consensus 75 ~GDVdf~~v~~~a~~iTPVPGGVGpmTvamL~~N~v~aa~~~ 116 (542)
||||||++++++|+|||||||||||||++|||+|+++++++.
T Consensus 249 vGDVdf~~v~~~a~~iTPVPGGVGp~T~a~L~~N~~~a~~~~ 290 (293)
T PRK14185 249 TGDVKFDEVAPKCSYITPVPGGVGPMTIVSLMKNTLLAGKKA 290 (293)
T ss_pred EcCCCHHHHHhhccEeCCCCCCchHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998754
No 14
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=100.00 E-value=2.2e-39 Score=328.95 Aligned_cols=111 Identities=37% Similarity=0.668 Sum_probs=105.8
Q ss_pred CchHHHHHHHhCCCe--eecCCCCCHHHHhhhCCEEEEeccCCCceecCcccCCeEEEeccccccCCCccCCCCeeeecc
Q psy7978 1 MWSSLQTFWLWVLAN--PSMSKTKNIQDVVKSADILVVGIGQPEYVKGDWIKPGAVVIDCGINSVPDASKASGQKLVGDV 78 (542)
Q Consensus 1 vgkPLa~LL~~~~AT--icHs~T~nl~~~~k~ADIVIsAvG~p~lI~~d~ik~GavVIDVGin~~~d~~~~~~~kl~GDV 78 (542)
||||||+||+++||| +|||+|+||++++++|||||+|+|+|+||++||||+|++|||||||++.+ +|+||||
T Consensus 171 VGkPla~lL~~~~ATVtichs~T~~L~~~~~~ADIvV~AvGkp~~i~~~~vk~GavVIDvGin~~~~------gkl~GDV 244 (288)
T PRK14171 171 VGKPLSALLLKENCSVTICHSKTHNLSSITSKADIVVAAIGSPLKLTAEYFNPESIVIDVGINRISG------NKIIGDV 244 (288)
T ss_pred chHHHHHHHHHCCCEEEEeCCCCCCHHHHHhhCCEEEEccCCCCccCHHHcCCCCEEEEeeccccCC------CCeECCc
Confidence 799999999999999 89999999999999999999999999999999999999999999999633 2799999
Q ss_pred ccccccccceEeecCCCCcchhhHHHHHHhHHHHHHHHH
Q psy7978 79 QYAEAKNVASWITPVPGGVGPMTVAMLMNNTVLSAERYI 117 (542)
Q Consensus 79 df~~v~~~a~~iTPVPGGVGpmTvamL~~N~v~aa~~~~ 117 (542)
||++++++|+|||||||||||||++|||+|+++++++++
T Consensus 245 d~~~v~~~a~~iTPVPGGVGp~T~a~L~~N~v~a~~~~~ 283 (288)
T PRK14171 245 DFENVKSKVKYITPVPGGIGPMTIAFLLKNTVKAFKDSL 283 (288)
T ss_pred cHHHHHhhceEeCCCCCCcHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999997654
No 15
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=100.00 E-value=5.5e-39 Score=327.50 Aligned_cols=118 Identities=52% Similarity=0.810 Sum_probs=110.3
Q ss_pred CchHHHHHHHhCCCe--eecCCCCCHHHHhhhCCEEEEeccCCCceecCcccCCeEEEeccccccCCCccCCCCeeeecc
Q psy7978 1 MWSSLQTFWLWVLAN--PSMSKTKNIQDVVKSADILVVGIGQPEYVKGDWIKPGAVVIDCGINSVPDASKASGQKLVGDV 78 (542)
Q Consensus 1 vgkPLa~LL~~~~AT--icHs~T~nl~~~~k~ADIVIsAvG~p~lI~~d~ik~GavVIDVGin~~~d~~~~~~~kl~GDV 78 (542)
||||||+||+++||| +|||+|+|+++++++|||||+|+|+|+||++||||+|++|||||||+.+++..++|.|+||||
T Consensus 179 VGkPla~lL~~~~ATVtvchs~T~nl~~~~~~ADIvv~AvGk~~~i~~~~vk~gavVIDvGin~~~~~~~~~g~kl~GDv 258 (299)
T PLN02516 179 VGLPVSLLLLKADATVTVVHSRTPDPESIVREADIVIAAAGQAMMIKGDWIKPGAAVIDVGTNAVSDPSKKSGYRLVGDV 258 (299)
T ss_pred chHHHHHHHHHCCCEEEEeCCCCCCHHHHHhhCCEEEEcCCCcCccCHHHcCCCCEEEEeeccccCcccccCCCceEcCc
Confidence 799999999999999 999999999999999999999999999999999999999999999997553333455899999
Q ss_pred ccccccccceEeecCCCCcchhhHHHHHHhHHHHHHHHHh
Q psy7978 79 QYAEAKNVASWITPVPGGVGPMTVAMLMNNTVLSAERYID 118 (542)
Q Consensus 79 df~~v~~~a~~iTPVPGGVGpmTvamL~~N~v~aa~~~~~ 118 (542)
||++++++|++||||||||||||++|||+|++++++++++
T Consensus 259 d~e~v~~~a~~iTPVPGGVGp~T~a~L~~N~v~a~~~~~~ 298 (299)
T PLN02516 259 DFAEVSKVAGWITPVPGGVGPMTVAMLLKNTVDGAKRVFA 298 (299)
T ss_pred ChHHhhhhceEecCCCCCchHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999988764
No 16
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=100.00 E-value=5.5e-39 Score=325.38 Aligned_cols=110 Identities=41% Similarity=0.656 Sum_probs=105.3
Q ss_pred CchHHHHHHHhCCCe--eecCCCCCHHHHhhhCCEEEEeccCCCceecCcccCCeEEEeccccccCCCccCCCCeeeecc
Q psy7978 1 MWSSLQTFWLWVLAN--PSMSKTKNIQDVVKSADILVVGIGQPEYVKGDWIKPGAVVIDCGINSVPDASKASGQKLVGDV 78 (542)
Q Consensus 1 vgkPLa~LL~~~~AT--icHs~T~nl~~~~k~ADIVIsAvG~p~lI~~d~ik~GavVIDVGin~~~d~~~~~~~kl~GDV 78 (542)
||||||+||+++||| +|||+|+||++++++|||||||+|+|+||+++|||+|++|||||||++.++ |+||||
T Consensus 169 VGkPla~lL~~~~atVt~chs~T~nl~~~~~~ADIvIsAvGkp~~i~~~~vk~GavVIDvGin~~~~g------kl~GDV 242 (282)
T PRK14166 169 VGRPMATMLLNAGATVSVCHIKTKDLSLYTRQADLIIVAAGCVNLLRSDMVKEGVIVVDVGINRLESG------KIVGDV 242 (282)
T ss_pred chHHHHHHHHHCCCEEEEeCCCCCCHHHHHhhCCEEEEcCCCcCccCHHHcCCCCEEEEecccccCCC------CeeCCC
Confidence 799999999999999 999999999999999999999999999999999999999999999996432 799999
Q ss_pred ccccccccceEeecCCCCcchhhHHHHHHhHHHHHHHH
Q psy7978 79 QYAEAKNVASWITPVPGGVGPMTVAMLMNNTVLSAERY 116 (542)
Q Consensus 79 df~~v~~~a~~iTPVPGGVGpmTvamL~~N~v~aa~~~ 116 (542)
||++++++|+|||||||||||||++|||+|++++++++
T Consensus 243 d~~~v~~~a~~iTPVPGGVGp~T~a~L~~N~v~a~~~~ 280 (282)
T PRK14166 243 DFEEVSKKSSYITPVPGGVGPMTIAMLLENTVKSAKNR 280 (282)
T ss_pred CHHHHHhhccEecCCCCCchHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999998764
No 17
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=100.00 E-value=6.9e-39 Score=324.78 Aligned_cols=112 Identities=45% Similarity=0.717 Sum_probs=106.8
Q ss_pred CchHHHHHHHhCCCe--eecCCCCCHHHHhhhCCEEEEeccCCCceecCcccCCeEEEeccccccCCCccCCCCeeeecc
Q psy7978 1 MWSSLQTFWLWVLAN--PSMSKTKNIQDVVKSADILVVGIGQPEYVKGDWIKPGAVVIDCGINSVPDASKASGQKLVGDV 78 (542)
Q Consensus 1 vgkPLa~LL~~~~AT--icHs~T~nl~~~~k~ADIVIsAvG~p~lI~~d~ik~GavVIDVGin~~~d~~~~~~~kl~GDV 78 (542)
||||||+||+++||| +|||+|+||++++++|||||+|+|+|+||++||||+|++|||||+|+..++ |+||||
T Consensus 169 VGkPla~lL~~~~atVtichs~T~~l~~~~~~ADIvI~AvG~~~~i~~~~vk~GavVIDvGin~~~~g------kl~GDv 242 (284)
T PRK14170 169 VGKPVAQLLLNENATVTIAHSRTKDLPQVAKEADILVVATGLAKFVKKDYIKPGAIVIDVGMDRDENN------KLCGDV 242 (284)
T ss_pred chHHHHHHHHHCCCEEEEeCCCCCCHHHHHhhCCEEEEecCCcCccCHHHcCCCCEEEEccCcccCCC------Ceeccc
Confidence 799999999999999 999999999999999999999999999999999999999999999996432 799999
Q ss_pred ccccccccceEeecCCCCcchhhHHHHHHhHHHHHHHHHh
Q psy7978 79 QYAEAKNVASWITPVPGGVGPMTVAMLMNNTVLSAERYID 118 (542)
Q Consensus 79 df~~v~~~a~~iTPVPGGVGpmTvamL~~N~v~aa~~~~~ 118 (542)
||++++++|+|||||||||||||++|||+|+++++++++.
T Consensus 243 dfe~~~~~a~~iTPVPGGVGpvT~a~L~~N~~~a~~~~~~ 282 (284)
T PRK14170 243 DFDDVVEEAGFITPVPGGVGPMTITMLLANTLKAAKRIWK 282 (284)
T ss_pred chHHHHhhccEecCCCCChHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999987764
No 18
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=100.00 E-value=6.7e-39 Score=324.75 Aligned_cols=111 Identities=49% Similarity=0.687 Sum_probs=106.0
Q ss_pred CchHHHHHHHhCCCe--eecCCCCCHHHHhhhCCEEEEeccCCCceecCcccCCeEEEeccccccCCCccCCCCeeeecc
Q psy7978 1 MWSSLQTFWLWVLAN--PSMSKTKNIQDVVKSADILVVGIGQPEYVKGDWIKPGAVVIDCGINSVPDASKASGQKLVGDV 78 (542)
Q Consensus 1 vgkPLa~LL~~~~AT--icHs~T~nl~~~~k~ADIVIsAvG~p~lI~~d~ik~GavVIDVGin~~~d~~~~~~~kl~GDV 78 (542)
||||||+||+++||| +|||+|+||++++++|||||+|+|+|+||++||||+|++|||||||++.++ |++|||
T Consensus 168 VGkPla~lL~~~~atVtichs~T~~l~~~~~~ADIvI~AvG~p~~i~~~~vk~GavVIDvGin~~~~g------kl~GDV 241 (282)
T PRK14169 168 VGRPLAGLMVNHDATVTIAHSKTRNLKQLTKEADILVVAVGVPHFIGADAVKPGAVVIDVGISRGADG------KLLGDV 241 (282)
T ss_pred chHHHHHHHHHCCCEEEEECCCCCCHHHHHhhCCEEEEccCCcCccCHHHcCCCcEEEEeeccccCCC------CeeecC
Confidence 799999999999999 999999999999999999999999999999999999999999999996442 799999
Q ss_pred ccccccccceEeecCCCCcchhhHHHHHHhHHHHHHHHH
Q psy7978 79 QYAEAKNVASWITPVPGGVGPMTVAMLMNNTVLSAERYI 117 (542)
Q Consensus 79 df~~v~~~a~~iTPVPGGVGpmTvamL~~N~v~aa~~~~ 117 (542)
||++++++|+|||||||||||||++|||+|++++++++.
T Consensus 242 d~~~v~~~a~~iTPVPGGVGp~T~a~L~~N~~~a~~~~~ 280 (282)
T PRK14169 242 DEAAVAPIASAITPVPGGVGPMTIASLMAQTVTLAKRRA 280 (282)
T ss_pred cHHHHHhhccEecCCCCCcHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999997754
No 19
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=100.00 E-value=7.6e-39 Score=324.92 Aligned_cols=115 Identities=41% Similarity=0.610 Sum_probs=107.0
Q ss_pred CchHHHHHHHhC----CCe--eecCCCCCHHHHhhhCCEEEEeccCCCceecCcccCCeEEEeccccccCCCccCCCCee
Q psy7978 1 MWSSLQTFWLWV----LAN--PSMSKTKNIQDVVKSADILVVGIGQPEYVKGDWIKPGAVVIDCGINSVPDASKASGQKL 74 (542)
Q Consensus 1 vgkPLa~LL~~~----~AT--icHs~T~nl~~~~k~ADIVIsAvG~p~lI~~d~ik~GavVIDVGin~~~d~~~~~~~kl 74 (542)
||||||+||+++ ||| +|||+|+||++++++|||||+|+|+|+||++||||+|++|||||||++.++++ +|+|+
T Consensus 165 VGkPla~lL~~~~~~~~AtVtvchs~T~~l~~~~~~ADIvV~AvG~p~~i~~~~ik~GavVIDvGin~~~~~~~-~g~kl 243 (287)
T PRK14181 165 VGKPLAALLMQKHPDTNATVTLLHSQSENLTEILKTADIIIAAIGVPLFIKEEMIAEKAVIVDVGTSRVPAANP-KGYIL 243 (287)
T ss_pred chHHHHHHHHhCcCCCCCEEEEeCCCCCCHHHHHhhCCEEEEccCCcCccCHHHcCCCCEEEEecccccccccC-CCCee
Confidence 799999999999 899 99999999999999999999999999999999999999999999999643222 24589
Q ss_pred eeccccccccccceEeecCCCCcchhhHHHHHHhHHHHHHHH
Q psy7978 75 VGDVQYAEAKNVASWITPVPGGVGPMTVAMLMNNTVLSAERY 116 (542)
Q Consensus 75 ~GDVdf~~v~~~a~~iTPVPGGVGpmTvamL~~N~v~aa~~~ 116 (542)
||||||++++++|+|||||||||||||+||||+|++++++++
T Consensus 244 ~GDVd~e~~~~~a~~iTPVPGGVGp~T~a~L~~N~~~a~~~~ 285 (287)
T PRK14181 244 VGDVDFNNVVPKCRAITPVPGGVGPMTVAMLMRNTWESYLRH 285 (287)
T ss_pred EeccchHHHHhhcccccCCCCchHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999998765
No 20
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=100.00 E-value=1.1e-38 Score=325.15 Aligned_cols=117 Identities=42% Similarity=0.604 Sum_probs=108.1
Q ss_pred CchHHHHHHHhC----CCe--eecCCCCCHHHHhhhCCEEEEeccCCCceecCcccCCeEEEeccccccCCCccCCCCee
Q psy7978 1 MWSSLQTFWLWV----LAN--PSMSKTKNIQDVVKSADILVVGIGQPEYVKGDWIKPGAVVIDCGINSVPDASKASGQKL 74 (542)
Q Consensus 1 vgkPLa~LL~~~----~AT--icHs~T~nl~~~~k~ADIVIsAvG~p~lI~~d~ik~GavVIDVGin~~~d~~~~~~~kl 74 (542)
||||||+||+++ ||| +|||+|+||++++++|||||+|+|+|+||++||||+|++|||||||++++. .++|+++
T Consensus 169 VGkPla~lL~~~~~~~~aTVtvchs~T~~l~~~~~~ADIvIsAvGkp~~i~~~~ik~gaiVIDvGin~~~~~-~~~g~kl 247 (297)
T PRK14167 169 VGKPMANLLIQKADGGNATVTVCHSRTDDLAAKTRRADIVVAAAGVPELIDGSMLSEGATVIDVGINRVDAD-TEKGYEL 247 (297)
T ss_pred cHHHHHHHHhcCccCCCCEEEEeCCCCCCHHHHHhhCCEEEEccCCcCccCHHHcCCCCEEEEccccccCcc-cccCCce
Confidence 799999999998 999 999999999999999999999999999999999999999999999996431 1224589
Q ss_pred eeccccccccccceEeecCCCCcchhhHHHHHHhHHHHHHHHHh
Q psy7978 75 VGDVQYAEAKNVASWITPVPGGVGPMTVAMLMNNTVLSAERYID 118 (542)
Q Consensus 75 ~GDVdf~~v~~~a~~iTPVPGGVGpmTvamL~~N~v~aa~~~~~ 118 (542)
||||||++++++|+|||||||||||||++|||+|+++++++++.
T Consensus 248 ~GDVd~e~v~~~a~~iTPVPGGVGpvT~a~L~~N~~~a~~~~~~ 291 (297)
T PRK14167 248 VGDVEFESAKEKASAITPVPGGVGPMTRAMLLYNTVKAASLQEG 291 (297)
T ss_pred eecCcHHHHHhhceEecCCCCCchHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999987654
No 21
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=100.00 E-value=2.4e-38 Score=297.72 Aligned_cols=111 Identities=55% Similarity=0.825 Sum_probs=96.0
Q ss_pred CchHHHHHHHhCCCe--eecCCCCCHHHHhhhCCEEEEeccCCCceecCcccCCeEEEeccccccCCCccCCCCeeeecc
Q psy7978 1 MWSSLQTFWLWVLAN--PSMSKTKNIQDVVKSADILVVGIGQPEYVKGDWIKPGAVVIDCGINSVPDASKASGQKLVGDV 78 (542)
Q Consensus 1 vgkPLa~LL~~~~AT--icHs~T~nl~~~~k~ADIVIsAvG~p~lI~~d~ik~GavVIDVGin~~~d~~~~~~~kl~GDV 78 (542)
||+||++||+++||| +||++|+|+++++++|||||+|+|+|+||+++|||+|++|||||+|+... +++++|||
T Consensus 48 VG~Pla~lL~~~~atVt~~h~~T~~l~~~~~~ADIVVsa~G~~~~i~~~~ik~gavVIDvG~~~~~~-----~~~~~GDv 122 (160)
T PF02882_consen 48 VGKPLAMLLLNKGATVTICHSKTKNLQEITRRADIVVSAVGKPNLIKADWIKPGAVVIDVGINYVPG-----DGKLVGDV 122 (160)
T ss_dssp THHHHHHHHHHTT-EEEEE-TTSSSHHHHHTTSSEEEE-SSSTT-B-GGGS-TTEEEEE--CEEETT-----TTEEEESB
T ss_pred CChHHHHHHHhCCCeEEeccCCCCcccceeeeccEEeeeeccccccccccccCCcEEEecCCccccc-----cceeeecc
Confidence 799999999999999 99999999999999999999999999999999999999999999999721 24899999
Q ss_pred ccccccccceEeecCCCCcchhhHHHHHHhHHHHHHHH
Q psy7978 79 QYAEAKNVASWITPVPGGVGPMTVAMLMNNTVLSAERY 116 (542)
Q Consensus 79 df~~v~~~a~~iTPVPGGVGpmTvamL~~N~v~aa~~~ 116 (542)
||++++++|++||||||||||||++|||+|+++++++|
T Consensus 123 ~~~~~~~~a~~itPvPgGVGplT~a~L~~N~v~a~~~~ 160 (160)
T PF02882_consen 123 DFESVKEKASAITPVPGGVGPLTVAMLMKNLVKAAKRQ 160 (160)
T ss_dssp -HHHHHTTCSEEE-SSSSCHHHHHHHHHHHHHHHHHHC
T ss_pred cHHHhhccceEEeeCCCCccHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999874
No 22
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=100.00 E-value=1.6e-38 Score=321.87 Aligned_cols=111 Identities=51% Similarity=0.718 Sum_probs=105.8
Q ss_pred CchHHHHHHHhCCCe--eecCCCCCHHHHhhhCCEEEEeccCCCceecCcccCCeEEEeccccccCCCccCCCCeeeecc
Q psy7978 1 MWSSLQTFWLWVLAN--PSMSKTKNIQDVVKSADILVVGIGQPEYVKGDWIKPGAVVIDCGINSVPDASKASGQKLVGDV 78 (542)
Q Consensus 1 vgkPLa~LL~~~~AT--icHs~T~nl~~~~k~ADIVIsAvG~p~lI~~d~ik~GavVIDVGin~~~d~~~~~~~kl~GDV 78 (542)
||||||+||+++||| +|||+|+||++++++|||||+|+|+|+||++||||+|++|||||+|+..++ |+||||
T Consensus 169 VGkPla~lL~~~~AtVtichs~T~nl~~~~~~ADIvI~AvGk~~~i~~~~ik~gaiVIDvGin~~~~g------kl~GDV 242 (282)
T PRK14182 169 VGKPMAMMLLERHATVTIAHSRTADLAGEVGRADILVAAIGKAELVKGAWVKEGAVVIDVGMNRLADG------KLVGDV 242 (282)
T ss_pred chHHHHHHHHHCCCEEEEeCCCCCCHHHHHhhCCEEEEecCCcCccCHHHcCCCCEEEEeeceecCCC------CeeCCC
Confidence 799999999999999 999999999999999999999999999999999999999999999996442 799999
Q ss_pred ccccccccceEeecCCCCcchhhHHHHHHhHHHHHHHHH
Q psy7978 79 QYAEAKNVASWITPVPGGVGPMTVAMLMNNTVLSAERYI 117 (542)
Q Consensus 79 df~~v~~~a~~iTPVPGGVGpmTvamL~~N~v~aa~~~~ 117 (542)
||++++++|+|||||||||||||++|||+|++++++++.
T Consensus 243 d~~~v~~~a~~iTPVPGGVGp~T~a~L~~N~~~~~~~~~ 281 (282)
T PRK14182 243 EFAAAAARASAITPVPGGVGPMTRAMLLVNTVELAKRTA 281 (282)
T ss_pred CHHHHHhhccEecCCCCCChHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999987653
No 23
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=100.00 E-value=2.1e-38 Score=322.60 Aligned_cols=114 Identities=47% Similarity=0.716 Sum_probs=106.8
Q ss_pred CchHHHHHHHhCCCe--eecCCCCCHHHHhhhCCEEEEeccCCCceecCcccCCeEEEeccccccCCCccCCCCeeeecc
Q psy7978 1 MWSSLQTFWLWVLAN--PSMSKTKNIQDVVKSADILVVGIGQPEYVKGDWIKPGAVVIDCGINSVPDASKASGQKLVGDV 78 (542)
Q Consensus 1 vgkPLa~LL~~~~AT--icHs~T~nl~~~~k~ADIVIsAvG~p~lI~~d~ik~GavVIDVGin~~~d~~~~~~~kl~GDV 78 (542)
||||||+||+++||| +|||+|+||++++++|||||+|+|+|+||+++|||+|++|||||||+++++. .+|+||||
T Consensus 172 VGkPla~lL~~~~aTVt~chs~T~~l~~~~~~ADIvVsAvGkp~~i~~~~ik~gaiVIDVGin~~~~~~---~~kl~GDv 248 (294)
T PRK14187 172 VGKPMACLLLGENCTVTTVHSATRDLADYCSKADILVAAVGIPNFVKYSWIKKGAIVIDVGINSIEEGG---VKKFVGDV 248 (294)
T ss_pred chHHHHHHHhhCCCEEEEeCCCCCCHHHHHhhCCEEEEccCCcCccCHHHcCCCCEEEEecccccCCCC---ccceeCCc
Confidence 799999999999999 9999999999999999999999999999999999999999999999964321 13799999
Q ss_pred ccccccccceEeecCCCCcchhhHHHHHHhHHHHHHHHH
Q psy7978 79 QYAEAKNVASWITPVPGGVGPMTVAMLMNNTVLSAERYI 117 (542)
Q Consensus 79 df~~v~~~a~~iTPVPGGVGpmTvamL~~N~v~aa~~~~ 117 (542)
||++++++|+|||||||||||||++|||+|++++++++.
T Consensus 249 d~e~v~~~a~~iTPVPGGVGp~T~a~L~~N~~~a~~~~~ 287 (294)
T PRK14187 249 DFAEVKKKASAITPVPGGVGPMTIAFLMVNTVIAACNQK 287 (294)
T ss_pred cHHHHhhhccEecCCCCCChHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999997754
No 24
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=100.00 E-value=1.9e-38 Score=321.42 Aligned_cols=109 Identities=41% Similarity=0.676 Sum_probs=104.8
Q ss_pred CchHHHHHHHhCCCe--eecCCCCCHHHHhhhCCEEEEeccCCCceecCcccCCeEEEeccccccCCCccCCCCeeeecc
Q psy7978 1 MWSSLQTFWLWVLAN--PSMSKTKNIQDVVKSADILVVGIGQPEYVKGDWIKPGAVVIDCGINSVPDASKASGQKLVGDV 78 (542)
Q Consensus 1 vgkPLa~LL~~~~AT--icHs~T~nl~~~~k~ADIVIsAvG~p~lI~~d~ik~GavVIDVGin~~~d~~~~~~~kl~GDV 78 (542)
||||||+||+++||| +|||+|+||++++++|||||+|+|+|+||++||||+|++|||||||+.+ + |+||||
T Consensus 170 VGkPla~lL~~~~ATVt~chs~T~dl~~~~k~ADIvIsAvGkp~~i~~~~vk~gavVIDvGin~~~-g------kl~GDv 242 (282)
T PRK14180 170 VGKPVSQLLLNAKATVTTCHRFTTDLKSHTTKADILIVAVGKPNFITADMVKEGAVVIDVGINHVD-G------KIVGDV 242 (282)
T ss_pred chHHHHHHHHHCCCEEEEEcCCCCCHHHHhhhcCEEEEccCCcCcCCHHHcCCCcEEEEecccccC-C------ceeCCc
Confidence 799999999999999 9999999999999999999999999999999999999999999999963 2 799999
Q ss_pred ccccccccceEeecCCCCcchhhHHHHHHhHHHHHHHH
Q psy7978 79 QYAEAKNVASWITPVPGGVGPMTVAMLMNNTVLSAERY 116 (542)
Q Consensus 79 df~~v~~~a~~iTPVPGGVGpmTvamL~~N~v~aa~~~ 116 (542)
||++++++|+|||||||||||||++|||+|++++++++
T Consensus 243 d~~~v~~~a~~iTPVPGGVGp~T~a~L~~Nl~~a~~~~ 280 (282)
T PRK14180 243 DFAAVKDKVAAITPVPGGVGPMTITELLYNTFQCAQEL 280 (282)
T ss_pred CHHHHHhhccEeccCCCChhHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999998765
No 25
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=100.00 E-value=1.7e-38 Score=321.22 Aligned_cols=107 Identities=42% Similarity=0.703 Sum_probs=102.9
Q ss_pred CchHHHHHHHhCCCe--eecCCCCCHHHHhhhCCEEEEeccCCCceecCcccCCeEEEeccccccCCCccCCCCeeeecc
Q psy7978 1 MWSSLQTFWLWVLAN--PSMSKTKNIQDVVKSADILVVGIGQPEYVKGDWIKPGAVVIDCGINSVPDASKASGQKLVGDV 78 (542)
Q Consensus 1 vgkPLa~LL~~~~AT--icHs~T~nl~~~~k~ADIVIsAvG~p~lI~~d~ik~GavVIDVGin~~~d~~~~~~~kl~GDV 78 (542)
||||||+||+++||| +|||+|+||++++++|||||+|+|+|+||++||||+|++|||||||+.+ + |+||||
T Consensus 170 VGkPla~lL~~~~AtVt~chs~T~~l~~~~~~ADIvIsAvGkp~~i~~~~ik~gavVIDvGin~~~-g------kl~GDv 242 (278)
T PRK14172 170 VGKPVAQLLLNENATVTICHSKTKNLKEVCKKADILVVAIGRPKFIDEEYVKEGAIVIDVGTSSVN-G------KITGDV 242 (278)
T ss_pred chHHHHHHHHHCCCEEEEeCCCCCCHHHHHhhCCEEEEcCCCcCccCHHHcCCCcEEEEeeccccC-C------ceeeec
Confidence 799999999999999 9999999999999999999999999999999999999999999999963 2 799999
Q ss_pred ccccccccceEeecCCCCcchhhHHHHHHhHHHHHH
Q psy7978 79 QYAEAKNVASWITPVPGGVGPMTVAMLMNNTVLSAE 114 (542)
Q Consensus 79 df~~v~~~a~~iTPVPGGVGpmTvamL~~N~v~aa~ 114 (542)
||++++++|++||||||||||||++|||+|++++++
T Consensus 243 d~~~v~~~a~~iTPVPGGVGp~T~a~L~~N~~~a~~ 278 (278)
T PRK14172 243 NFDKVIDKASYITPVPGGVGSLTTTLLIKNVCEALK 278 (278)
T ss_pred cHHHHHhhccEecCCCCCccHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999998863
No 26
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=100.00 E-value=3.5e-38 Score=321.54 Aligned_cols=115 Identities=43% Similarity=0.703 Sum_probs=107.2
Q ss_pred CchHHHHHHHhCCCe--eecCCCCCHHHHhhhCCEEEEeccCCCceecCcccCCeEEEeccccccCCCccCCCCeeeecc
Q psy7978 1 MWSSLQTFWLWVLAN--PSMSKTKNIQDVVKSADILVVGIGQPEYVKGDWIKPGAVVIDCGINSVPDASKASGQKLVGDV 78 (542)
Q Consensus 1 vgkPLa~LL~~~~AT--icHs~T~nl~~~~k~ADIVIsAvG~p~lI~~d~ik~GavVIDVGin~~~d~~~~~~~kl~GDV 78 (542)
||||||+||+++||| +|||+|+||++++++|||||||+|+|+||+++|||+|++|||||+|+..+++ ++ +|+||||
T Consensus 170 VGkPla~lL~~~~atVtv~hs~T~~l~~~~~~ADIvIsAvGkp~~i~~~~ik~gavVIDvGin~~~~~~-~~-gkl~GDv 247 (297)
T PRK14186 170 VGKPLALMLLAANATVTIAHSRTQDLASITREADILVAAAGRPNLIGAEMVKPGAVVVDVGIHRLPSSD-GK-TRLCGDV 247 (297)
T ss_pred chHHHHHHHHHCCCEEEEeCCCCCCHHHHHhhCCEEEEccCCcCccCHHHcCCCCEEEEeccccccccc-cC-CceeCCc
Confidence 799999999999999 9999999999999999999999999999999999999999999999964321 12 2899999
Q ss_pred ccccccccceEeecCCCCcchhhHHHHHHhHHHHHHHHH
Q psy7978 79 QYAEAKNVASWITPVPGGVGPMTVAMLMNNTVLSAERYI 117 (542)
Q Consensus 79 df~~v~~~a~~iTPVPGGVGpmTvamL~~N~v~aa~~~~ 117 (542)
||++++++|++||||||||||||++|||+|++++++++.
T Consensus 248 d~~~v~~~a~~iTPVPGGVGp~T~a~L~~Nl~~a~~~~~ 286 (297)
T PRK14186 248 DFEEVEPVAAAITPVPGGVGPMTVTMLLVNTVLSWQKRH 286 (297)
T ss_pred cHHHHHhhceEecCCCCCchHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999998765
No 27
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=100.00 E-value=5.1e-38 Score=320.28 Aligned_cols=117 Identities=43% Similarity=0.659 Sum_probs=106.9
Q ss_pred CchHHHHHHHhC----CCe--eecCCCCCHHHHhhhCCEEEEeccCCCceecCcccCCeEEEeccccccCCCccCCCCee
Q psy7978 1 MWSSLQTFWLWV----LAN--PSMSKTKNIQDVVKSADILVVGIGQPEYVKGDWIKPGAVVIDCGINSVPDASKASGQKL 74 (542)
Q Consensus 1 vgkPLa~LL~~~----~AT--icHs~T~nl~~~~k~ADIVIsAvG~p~lI~~d~ik~GavVIDVGin~~~d~~~~~~~kl 74 (542)
||||||+||+++ ||| +|||+|+||++++++|||||+|+|+|+||++||||+|++|||||||++.+....+++++
T Consensus 173 VGkPla~lL~~~~~~~~atVtv~hs~T~~l~~~~~~ADIvVsAvGkp~~i~~~~ik~gavVIDvGin~~~~~~~~g~~~~ 252 (297)
T PRK14168 173 VGKPIANMMTQKGPGANATVTIVHTRSKNLARHCQRADILIVAAGVPNLVKPEWIKPGATVIDVGVNRVGTNESTGKAIL 252 (297)
T ss_pred ccHHHHHHHHhcccCCCCEEEEecCCCcCHHHHHhhCCEEEEecCCcCccCHHHcCCCCEEEecCCCccCccccCCCcce
Confidence 799999999998 899 99999999999999999999999999999999999999999999999632111112359
Q ss_pred eeccccccccccceEeecCCCCcchhhHHHHHHhHHHHHHHHH
Q psy7978 75 VGDVQYAEAKNVASWITPVPGGVGPMTVAMLMNNTVLSAERYI 117 (542)
Q Consensus 75 ~GDVdf~~v~~~a~~iTPVPGGVGpmTvamL~~N~v~aa~~~~ 117 (542)
+|||||++++++|++||||||||||||++|||+|+++++++++
T Consensus 253 ~GDVdfe~v~~~a~~iTPVPGGVGp~T~a~L~~N~~~a~~~~~ 295 (297)
T PRK14168 253 SGDVDFDAVKEIAGKITPVPGGVGPMTIAMLMRNTLKSAKFHL 295 (297)
T ss_pred eccccHHHHHhhccEecCCCCCchHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999998775
No 28
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=100.00 E-value=7.2e-38 Score=317.59 Aligned_cols=111 Identities=48% Similarity=0.730 Sum_probs=106.4
Q ss_pred CchHHHHHHHhCCCe--eecCCCCCHHHHhhhCCEEEEeccCCCceecCcccCCeEEEeccccccCCCccCCCCeeeecc
Q psy7978 1 MWSSLQTFWLWVLAN--PSMSKTKNIQDVVKSADILVVGIGQPEYVKGDWIKPGAVVIDCGINSVPDASKASGQKLVGDV 78 (542)
Q Consensus 1 vgkPLa~LL~~~~AT--icHs~T~nl~~~~k~ADIVIsAvG~p~lI~~d~ik~GavVIDVGin~~~d~~~~~~~kl~GDV 78 (542)
||||||+||+++||| +|||+|+||++++++|||||+|+|+|+||+++|||+|++|||||+|++.++ |+||||
T Consensus 170 VG~Pla~lL~~~~atVt~chs~t~~l~~~~~~ADIvI~AvG~p~~i~~~~ik~gavVIDvGi~~~~~g------kl~GDv 243 (284)
T PRK14190 170 VGKPVGQLLLNENATVTYCHSKTKNLAELTKQADILIVAVGKPKLITADMVKEGAVVIDVGVNRLENG------KLCGDV 243 (284)
T ss_pred cHHHHHHHHHHCCCEEEEEeCCchhHHHHHHhCCEEEEecCCCCcCCHHHcCCCCEEEEeeccccCCC------CeeccC
Confidence 799999999999999 999999999999999999999999999999999999999999999997542 799999
Q ss_pred ccccccccceEeecCCCCcchhhHHHHHHhHHHHHHHHH
Q psy7978 79 QYAEAKNVASWITPVPGGVGPMTVAMLMNNTVLSAERYI 117 (542)
Q Consensus 79 df~~v~~~a~~iTPVPGGVGpmTvamL~~N~v~aa~~~~ 117 (542)
||++++++|++||||||||||||++|||+|+++++++++
T Consensus 244 d~e~v~~~a~~iTPVPGGVGpvT~a~L~~N~~~a~~~~~ 282 (284)
T PRK14190 244 DFDNVKEKASYITPVPGGVGPMTITMLMHNTVELAKRAG 282 (284)
T ss_pred cHHHHhhhceEecCCCCCChHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999998754
No 29
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=100.00 E-value=9.3e-38 Score=316.59 Aligned_cols=107 Identities=41% Similarity=0.712 Sum_probs=103.1
Q ss_pred CchHHHHHHHhCCCe--eecCCCCCHHHHhhhCCEEEEeccCCCceecCcccCCeEEEeccccccCCCccCCCCeeeecc
Q psy7978 1 MWSSLQTFWLWVLAN--PSMSKTKNIQDVVKSADILVVGIGQPEYVKGDWIKPGAVVIDCGINSVPDASKASGQKLVGDV 78 (542)
Q Consensus 1 vgkPLa~LL~~~~AT--icHs~T~nl~~~~k~ADIVIsAvG~p~lI~~d~ik~GavVIDVGin~~~d~~~~~~~kl~GDV 78 (542)
||||||+||+++||| +|||+|+||++++|+|||||+|+|+|+||++||||+|++|||||||+ +++|||
T Consensus 171 VGkPla~lL~~~~atVt~chs~T~~l~~~~~~ADIvIsAvGk~~~i~~~~ik~gavVIDvGin~----------~~~GDV 240 (284)
T PRK14177 171 LGKPMAMLLTEMNATVTLCHSKTQNLPSIVRQADIIVGAVGKPEFIKADWISEGAVLLDAGYNP----------GNVGDI 240 (284)
T ss_pred chHHHHHHHHHCCCEEEEeCCCCCCHHHHHhhCCEEEEeCCCcCccCHHHcCCCCEEEEecCcc----------cccCCc
Confidence 799999999999999 99999999999999999999999999999999999999999999997 489999
Q ss_pred ccccccccceEeecCCCCcchhhHHHHHHhHHHHHHHHH
Q psy7978 79 QYAEAKNVASWITPVPGGVGPMTVAMLMNNTVLSAERYI 117 (542)
Q Consensus 79 df~~v~~~a~~iTPVPGGVGpmTvamL~~N~v~aa~~~~ 117 (542)
||++++++|++||||||||||||++|||+|+++++++..
T Consensus 241 d~~~v~~~a~~iTPVPGGVGp~T~a~L~~N~~~a~~~~~ 279 (284)
T PRK14177 241 EISKAKDKSSFYTPVPGGVGPMTIAVLLLQTLYSFKEHF 279 (284)
T ss_pred CHHHHhhhccEecCCCCCChHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999986543
No 30
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=100.00 E-value=1.2e-37 Score=315.32 Aligned_cols=110 Identities=43% Similarity=0.708 Sum_probs=105.2
Q ss_pred CchHHHHHHHhCCCe--eecCCCCCHHHHhhhCCEEEEeccCCCceecCcccCCeEEEeccccccCCCccCCCCeeeecc
Q psy7978 1 MWSSLQTFWLWVLAN--PSMSKTKNIQDVVKSADILVVGIGQPEYVKGDWIKPGAVVIDCGINSVPDASKASGQKLVGDV 78 (542)
Q Consensus 1 vgkPLa~LL~~~~AT--icHs~T~nl~~~~k~ADIVIsAvG~p~lI~~d~ik~GavVIDVGin~~~d~~~~~~~kl~GDV 78 (542)
||||||+||+++||| +|||+|+||++++++|||||+|+|+|+||++||||+|++|||||||++.++ |+||||
T Consensus 169 VG~Pla~lL~~~~AtVti~hs~T~~l~~~~~~ADIvV~AvGkp~~i~~~~vk~gavvIDvGin~~~~g------kl~GDV 242 (281)
T PRK14183 169 VGKPMAALLLNANATVDICHIFTKDLKAHTKKADIVIVGVGKPNLITEDMVKEGAIVIDIGINRTEDG------RLVGDV 242 (281)
T ss_pred chHHHHHHHHHCCCEEEEeCCCCcCHHHHHhhCCEEEEecCcccccCHHHcCCCcEEEEeeccccCCC------CeECCc
Confidence 799999999999999 999999999999999999999999999999999999999999999996442 799999
Q ss_pred ccccccccceEeecCCCCcchhhHHHHHHhHHHHHHHH
Q psy7978 79 QYAEAKNVASWITPVPGGVGPMTVAMLMNNTVLSAERY 116 (542)
Q Consensus 79 df~~v~~~a~~iTPVPGGVGpmTvamL~~N~v~aa~~~ 116 (542)
||++++++|+|||||||||||||++|||+|++++++++
T Consensus 243 d~~~~~~~a~~iTPVPGGVGpvT~a~L~~N~~~a~~~~ 280 (281)
T PRK14183 243 DFENVAKKCSYITPVPGGVGPMTIAMLLSNTLKAAKNR 280 (281)
T ss_pred cHHHHHhhceEecCCCCCChHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999998753
No 31
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=100.00 E-value=3.4e-37 Score=312.59 Aligned_cols=109 Identities=38% Similarity=0.574 Sum_probs=103.7
Q ss_pred CchHHHHHHHh--CCCe--eecCCCCCHHHHhhhCCEEEEeccCCCceecCcccCCeEEEeccccccCCCccCCCCeeee
Q psy7978 1 MWSSLQTFWLW--VLAN--PSMSKTKNIQDVVKSADILVVGIGQPEYVKGDWIKPGAVVIDCGINSVPDASKASGQKLVG 76 (542)
Q Consensus 1 vgkPLa~LL~~--~~AT--icHs~T~nl~~~~k~ADIVIsAvG~p~lI~~d~ik~GavVIDVGin~~~d~~~~~~~kl~G 76 (542)
||||||+||++ +||| +|||+|+||++++|+|||||+|+|+|+||++||||+|++|||||+|+..++ |+||
T Consensus 170 VGkPla~lL~~~~~~atVtvchs~T~~l~~~~k~ADIvV~AvGkp~~i~~~~ik~GavVIDvGin~~~~g------kl~G 243 (284)
T PRK14193 170 VGRPIGLLLTRRSENATVTLCHTGTRDLAAHTRRADIIVAAAGVAHLVTADMVKPGAAVLDVGVSRAGDG------KLVG 243 (284)
T ss_pred chHHHHHHHhhccCCCEEEEeCCCCCCHHHHHHhCCEEEEecCCcCccCHHHcCCCCEEEEccccccCCC------cEEe
Confidence 79999999999 8999 999999999999999999999999999999999999999999999995432 8999
Q ss_pred ccccccccccceEeecCCCCcchhhHHHHHHhHHHHHHHH
Q psy7978 77 DVQYAEAKNVASWITPVPGGVGPMTVAMLMNNTVLSAERY 116 (542)
Q Consensus 77 DVdf~~v~~~a~~iTPVPGGVGpmTvamL~~N~v~aa~~~ 116 (542)
||| ++++++|++||||||||||||++|||+|++++++++
T Consensus 244 Dvd-~~v~~~a~~iTPVPGGVGp~T~a~L~~N~~~a~~~~ 282 (284)
T PRK14193 244 DVH-PDVWEVAGAVSPNPGGVGPMTRAFLLTNVVERAERR 282 (284)
T ss_pred ecC-HhHHhhCCEEeCCCCChhHHHHHHHHHHHHHHHHHh
Confidence 999 999999999999999999999999999999998764
No 32
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=100.00 E-value=4e-37 Score=312.51 Aligned_cols=116 Identities=45% Similarity=0.672 Sum_probs=105.7
Q ss_pred CchHHHHHHHhCCCe--eecCCCCCHHHHhhhCCEEEEeccCCCceecCcccCCeEEEeccccccCCCccCCCCeeeecc
Q psy7978 1 MWSSLQTFWLWVLAN--PSMSKTKNIQDVVKSADILVVGIGQPEYVKGDWIKPGAVVIDCGINSVPDASKASGQKLVGDV 78 (542)
Q Consensus 1 vgkPLa~LL~~~~AT--icHs~T~nl~~~~k~ADIVIsAvG~p~lI~~d~ik~GavVIDVGin~~~d~~~~~~~kl~GDV 78 (542)
||||||+||+++||| +|||+|+||++++++|||||+|+|+|+|+++||||+|++|||||||++.++++ ++++||||
T Consensus 167 VGkPla~lL~~~~aTVtichs~T~~l~~~~~~ADIvIsAvGkp~~i~~~~vk~GavVIDVGin~~~~~~g--k~~l~GDV 244 (287)
T PRK14173 167 VGKPLAALLLREDATVTLAHSKTQDLPAVTRRADVLVVAVGRPHLITPEMVRPGAVVVDVGINRVGGNGG--RDILTGDV 244 (287)
T ss_pred cHHHHHHHHHHCCCEEEEeCCCCCCHHHHHhhCCEEEEecCCcCccCHHHcCCCCEEEEccCccccCCCC--ceeeeccc
Confidence 799999999999999 99999999999999999999999999999999999999999999999632211 12399999
Q ss_pred ccccccccceEeecCCCCcchhhHHHHHHhHHHHHHHHHhh
Q psy7978 79 QYAEAKNVASWITPVPGGVGPMTVAMLMNNTVLSAERYIDR 119 (542)
Q Consensus 79 df~~v~~~a~~iTPVPGGVGpmTvamL~~N~v~aa~~~~~~ 119 (542)
| ++++++|++||||||||||||++|||+|++++++++.+.
T Consensus 245 d-~~v~~~a~~iTPVPGGVGp~T~a~L~~N~~~a~~~~~~~ 284 (287)
T PRK14173 245 H-PEVAEVAGALTPVPGGVGPMTVAMLMANTVIAALRRRGG 284 (287)
T ss_pred c-HhHHhhCcEEecCCCChhHHHHHHHHHHHHHHHHHHccC
Confidence 9 789999999999999999999999999999999876543
No 33
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=100.00 E-value=1.3e-36 Score=308.62 Aligned_cols=110 Identities=45% Similarity=0.668 Sum_probs=104.9
Q ss_pred CchHHHHHHHh----CCCe--eecCCCCCHHHHhhhCCEEEEeccCCCceecCcccCCeEEEeccccccCCCccCCCCee
Q psy7978 1 MWSSLQTFWLW----VLAN--PSMSKTKNIQDVVKSADILVVGIGQPEYVKGDWIKPGAVVIDCGINSVPDASKASGQKL 74 (542)
Q Consensus 1 vgkPLa~LL~~----~~AT--icHs~T~nl~~~~k~ADIVIsAvG~p~lI~~d~ik~GavVIDVGin~~~d~~~~~~~kl 74 (542)
||||||+||++ +||| +|||+|+||++++++|||||+|+|+|+||+++|||+|++|||||+|++++ ++
T Consensus 169 VG~Pla~lL~~~~~~~~AtVt~~hs~t~~l~~~~~~ADIVI~AvG~p~li~~~~vk~GavVIDVGi~~~~~-------~l 241 (286)
T PRK14184 169 VGKPLALMLGAPGKFANATVTVCHSRTPDLAEECREADFLFVAIGRPRFVTADMVKPGAVVVDVGINRTDD-------GL 241 (286)
T ss_pred chHHHHHHHhCCcccCCCEEEEEeCCchhHHHHHHhCCEEEEecCCCCcCCHHHcCCCCEEEEeeeeccCC-------Cc
Confidence 79999999999 8999 99999999999999999999999999999999999999999999999632 59
Q ss_pred eeccccccccccceEeecCCCCcchhhHHHHHHhHHHHHHHHH
Q psy7978 75 VGDVQYAEAKNVASWITPVPGGVGPMTVAMLMNNTVLSAERYI 117 (542)
Q Consensus 75 ~GDVdf~~v~~~a~~iTPVPGGVGpmTvamL~~N~v~aa~~~~ 117 (542)
||||||++++++|+|||||||||||||+||||+|++++++++.
T Consensus 242 ~GDVdf~~v~~~a~~iTPVPGGVGp~Tva~Ll~N~~~a~~~~~ 284 (286)
T PRK14184 242 VGDCDFEGLSDVASAITPVPGGVGPMTIAQLLVNTVQSWKERV 284 (286)
T ss_pred cCCccHHHHHhhceEecCCCCCChHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999987643
No 34
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=100.00 E-value=2e-36 Score=307.21 Aligned_cols=113 Identities=42% Similarity=0.680 Sum_probs=107.3
Q ss_pred CchHHHHHHHhCCCe--eecCCCCCHHHHhhhCCEEEEeccCCCceecCcccCCeEEEeccccccCCCccCCCCeeeecc
Q psy7978 1 MWSSLQTFWLWVLAN--PSMSKTKNIQDVVKSADILVVGIGQPEYVKGDWIKPGAVVIDCGINSVPDASKASGQKLVGDV 78 (542)
Q Consensus 1 vgkPLa~LL~~~~AT--icHs~T~nl~~~~k~ADIVIsAvG~p~lI~~d~ik~GavVIDVGin~~~d~~~~~~~kl~GDV 78 (542)
||+|+|+||+++||| +|||+|+||++++++|||||+|+|+|+|++++|||+|++|||||+|++.++ |+||||
T Consensus 169 VG~Pla~lL~~~gAtVtv~hs~t~~l~~~~~~ADIvV~AvG~p~~i~~~~vk~GavVIDvGi~~~~~g------klvGDv 242 (285)
T PRK14191 169 VGKPLAMLMLNAGASVSVCHILTKDLSFYTQNADIVCVGVGKPDLIKASMVKKGAVVVDIGINRLNDG------RLVGDV 242 (285)
T ss_pred hHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHhCCEEEEecCCCCcCCHHHcCCCcEEEEeecccccCC------ceeccc
Confidence 699999999999999 999999999999999999999999999999999999999999999996442 899999
Q ss_pred ccccccccceEeecCCCCcchhhHHHHHHhHHHHHHHHHhh
Q psy7978 79 QYAEAKNVASWITPVPGGVGPMTVAMLMNNTVLSAERYIDR 119 (542)
Q Consensus 79 df~~v~~~a~~iTPVPGGVGpmTvamL~~N~v~aa~~~~~~ 119 (542)
||++++++|++||||||||||||+||||+|++++++++..+
T Consensus 243 d~e~v~~~a~~iTPVPGGVGpvT~a~L~~N~~~a~~~~~~~ 283 (285)
T PRK14191 243 DFENVAPKASFITPVPGGVGPMTIVSLLENTLIAAEKRQRK 283 (285)
T ss_pred cHHHHhhhccEEecCCCCChHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999876543
No 35
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=100.00 E-value=2.2e-36 Score=306.87 Aligned_cols=111 Identities=43% Similarity=0.678 Sum_probs=105.9
Q ss_pred CchHHHHHHHhCCCe--eecCCCCCHHHHhhhCCEEEEeccCCCceecCcccCCeEEEeccccccCCCccCCCCeeeecc
Q psy7978 1 MWSSLQTFWLWVLAN--PSMSKTKNIQDVVKSADILVVGIGQPEYVKGDWIKPGAVVIDCGINSVPDASKASGQKLVGDV 78 (542)
Q Consensus 1 vgkPLa~LL~~~~AT--icHs~T~nl~~~~k~ADIVIsAvG~p~lI~~d~ik~GavVIDVGin~~~d~~~~~~~kl~GDV 78 (542)
|||||++||+++||| +|||+|+||++++++|||||+|+|+|+||+++|+|+|++|||||+|+..++ |+||||
T Consensus 170 VGkPla~lL~~~~atVt~~hs~t~~l~~~~~~ADIVV~avG~~~~i~~~~ik~gavVIDVGin~~~~g------kl~GDV 243 (285)
T PRK14189 170 VGKPMAMLLLQAGATVTICHSKTRDLAAHTRQADIVVAAVGKRNVLTADMVKPGATVIDVGMNRDDAG------KLCGDV 243 (285)
T ss_pred cHHHHHHHHHHCCCEEEEecCCCCCHHHHhhhCCEEEEcCCCcCccCHHHcCCCCEEEEccccccCCC------CeeCCc
Confidence 699999999999999 899999999999999999999999999999999999999999999996442 799999
Q ss_pred ccccccccceEeecCCCCcchhhHHHHHHhHHHHHHHHH
Q psy7978 79 QYAEAKNVASWITPVPGGVGPMTVAMLMNNTVLSAERYI 117 (542)
Q Consensus 79 df~~v~~~a~~iTPVPGGVGpmTvamL~~N~v~aa~~~~ 117 (542)
||++++++|+|||||||||||||++|||+|++++++++.
T Consensus 244 d~~~v~~~a~~iTPVPGGVGp~T~a~Ll~N~~~a~~~~~ 282 (285)
T PRK14189 244 DFAGVKEVAGYITPVPGGVGPMTITMLLVNTIEAAERAA 282 (285)
T ss_pred cHHHHHhhceEecCCCCCchHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999997754
No 36
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=100.00 E-value=2.5e-36 Score=307.85 Aligned_cols=117 Identities=47% Similarity=0.708 Sum_probs=108.7
Q ss_pred CchHHHHHHHh----CCCe--eecCCCCCHHHHhhhCCEEEEeccCCCceecCcccCCeEEEeccccccCCCccCCCCee
Q psy7978 1 MWSSLQTFWLW----VLAN--PSMSKTKNIQDVVKSADILVVGIGQPEYVKGDWIKPGAVVIDCGINSVPDASKASGQKL 74 (542)
Q Consensus 1 vgkPLa~LL~~----~~AT--icHs~T~nl~~~~k~ADIVIsAvG~p~lI~~d~ik~GavVIDVGin~~~d~~~~~~~kl 74 (542)
||||||+||++ +||| +|||+|+||++++++|||||+|+|+|+||+++|||+|++|||||+|++.++.+++|+|+
T Consensus 171 VG~Pla~lL~~~~~~~~atVt~~hs~t~~l~~~~~~ADIvI~Avg~~~li~~~~vk~GavVIDVgi~~~~~~~~~~g~kl 250 (295)
T PRK14174 171 VGKPMANLMLQKLKESNCTVTICHSATKDIPSYTRQADILIAAIGKARFITADMVKPGAVVIDVGINRIEDPSTKSGYRL 250 (295)
T ss_pred chHHHHHHHHhccccCCCEEEEEeCCchhHHHHHHhCCEEEEecCccCccCHHHcCCCCEEEEeeccccccccccCCCce
Confidence 79999999998 7999 99999999999999999999999999999999999999999999999754334456689
Q ss_pred eeccccccccccceEeecCCCCcchhhHHHHHHhHHHHHHHHH
Q psy7978 75 VGDVQYAEAKNVASWITPVPGGVGPMTVAMLMNNTVLSAERYI 117 (542)
Q Consensus 75 ~GDVdf~~v~~~a~~iTPVPGGVGpmTvamL~~N~v~aa~~~~ 117 (542)
||||||++++++|+|||||||||||||++|||+|++++++++.
T Consensus 251 ~GDVd~~~v~~~a~~iTPVPGGVGp~T~a~L~~Nl~~a~~~~~ 293 (295)
T PRK14174 251 VGDVDYEGVSAKASAITPVPGGVGPMTIAMLLKNTLQSFERVN 293 (295)
T ss_pred ECCcCHHHHHhhccEecCCCCCchHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999987653
No 37
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=100.00 E-value=3.3e-36 Score=305.70 Aligned_cols=109 Identities=39% Similarity=0.599 Sum_probs=104.2
Q ss_pred CchHHHHHHHhCCCe--eecCCCCCHHHHhhhCCEEEEeccCCCceecCcccCCeEEEeccccccCCCccCCCCeeeecc
Q psy7978 1 MWSSLQTFWLWVLAN--PSMSKTKNIQDVVKSADILVVGIGQPEYVKGDWIKPGAVVIDCGINSVPDASKASGQKLVGDV 78 (542)
Q Consensus 1 vgkPLa~LL~~~~AT--icHs~T~nl~~~~k~ADIVIsAvG~p~lI~~d~ik~GavVIDVGin~~~d~~~~~~~kl~GDV 78 (542)
||||||+||+++||| +|||+|+||++++++|||||+|+|+|+||+++|||+|++|||||+|+. ++ |++|||
T Consensus 176 VGkPla~lL~~~~atVtv~hs~T~~l~~~~~~ADIvv~AvG~p~~i~~~~vk~gavVIDvGin~~-~g------kl~GDv 248 (287)
T PRK14176 176 VGKPMAAMLLNRNATVSVCHVFTDDLKKYTLDADILVVATGVKHLIKADMVKEGAVIFDVGITKE-ED------KVYGDV 248 (287)
T ss_pred cHHHHHHHHHHCCCEEEEEeccCCCHHHHHhhCCEEEEccCCccccCHHHcCCCcEEEEeccccc-CC------CccCCc
Confidence 799999999999999 999999999999999999999999999999999999999999999985 21 799999
Q ss_pred ccccccccceEeecCCCCcchhhHHHHHHhHHHHHHHH
Q psy7978 79 QYAEAKNVASWITPVPGGVGPMTVAMLMNNTVLSAERY 116 (542)
Q Consensus 79 df~~v~~~a~~iTPVPGGVGpmTvamL~~N~v~aa~~~ 116 (542)
||++++++|++||||||||||||++|||+|+++++++.
T Consensus 249 d~~~~~~~a~~iTPVPGGVGp~T~a~L~~n~~~a~~~~ 286 (287)
T PRK14176 249 DFENVIKKASLITPVPGGVGPLTIAMLMKHVLMCAEKS 286 (287)
T ss_pred CHHHHHhhceEcCCCCCCChHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999998653
No 38
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=100.00 E-value=4.1e-36 Score=304.85 Aligned_cols=112 Identities=50% Similarity=0.855 Sum_probs=106.9
Q ss_pred CchHHHHHHHhCCCe--eecCCCCCHHHHhhhCCEEEEeccCCCceecCcccCCeEEEeccccccCCCccCCCCeeeecc
Q psy7978 1 MWSSLQTFWLWVLAN--PSMSKTKNIQDVVKSADILVVGIGQPEYVKGDWIKPGAVVIDCGINSVPDASKASGQKLVGDV 78 (542)
Q Consensus 1 vgkPLa~LL~~~~AT--icHs~T~nl~~~~k~ADIVIsAvG~p~lI~~d~ik~GavVIDVGin~~~d~~~~~~~kl~GDV 78 (542)
||||||+||+++||| +|||+|+||++++++|||||+|+|+|+||+++|||+|++|||||||+++++ +++|||
T Consensus 171 VG~Pla~lL~~~~atVtv~hs~T~~l~~~~~~ADIvi~avG~p~~v~~~~vk~gavVIDvGin~~~~g------k~~GDv 244 (285)
T PRK10792 171 VGRPMSLELLLAGCTVTVCHRFTKNLRHHVRNADLLVVAVGKPGFIPGEWIKPGAIVIDVGINRLEDG------KLVGDV 244 (285)
T ss_pred cHHHHHHHHHHCCCeEEEEECCCCCHHHHHhhCCEEEEcCCCcccccHHHcCCCcEEEEcccccccCC------CcCCCc
Confidence 799999999999999 999999999999999999999999999999999999999999999997542 799999
Q ss_pred ccccccccceEeecCCCCcchhhHHHHHHhHHHHHHHHHh
Q psy7978 79 QYAEAKNVASWITPVPGGVGPMTVAMLMNNTVLSAERYID 118 (542)
Q Consensus 79 df~~v~~~a~~iTPVPGGVGpmTvamL~~N~v~aa~~~~~ 118 (542)
||++++++|++||||||||||||++|||+|++++++++++
T Consensus 245 d~~~~~~~a~~itPvPGGVGp~T~a~L~~N~~~a~~~~~~ 284 (285)
T PRK10792 245 EFETAAERASWITPVPGGVGPMTVATLLENTLQACEEYHD 284 (285)
T ss_pred CHHHHHhhccCcCCCCCCChHHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999987654
No 39
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=100.00 E-value=2.5e-35 Score=299.14 Aligned_cols=111 Identities=46% Similarity=0.737 Sum_probs=106.1
Q ss_pred CchHHHHHHHhCCCe--eecCCCCCHHHHhhhCCEEEEeccCCCceecCcccCCeEEEeccccccCCCccCCCCeeeecc
Q psy7978 1 MWSSLQTFWLWVLAN--PSMSKTKNIQDVVKSADILVVGIGQPEYVKGDWIKPGAVVIDCGINSVPDASKASGQKLVGDV 78 (542)
Q Consensus 1 vgkPLa~LL~~~~AT--icHs~T~nl~~~~k~ADIVIsAvG~p~lI~~d~ik~GavVIDVGin~~~d~~~~~~~kl~GDV 78 (542)
||+|||+||+++||| +|||+|+|+++++++|||||+|+|+|++|+++|+|+|++|||||||+..++ |+||||
T Consensus 170 vG~Pla~lL~~~gatVtv~~s~t~~l~~~~~~ADIVI~avg~~~~v~~~~ik~GavVIDvgin~~~~g------kl~GDV 243 (284)
T PRK14179 170 VGKPMAQLLLDKNATVTLTHSRTRNLAEVARKADILVVAIGRGHFVTKEFVKEGAVVIDVGMNRDENG------KLIGDV 243 (284)
T ss_pred CcHHHHHHHHHCCCEEEEECCCCCCHHHHHhhCCEEEEecCccccCCHHHccCCcEEEEecceecCCC------CeecCc
Confidence 799999999999999 999999999999999999999999999999999999999999999996442 799999
Q ss_pred ccccccccceEeecCCCCcchhhHHHHHHhHHHHHHHHH
Q psy7978 79 QYAEAKNVASWITPVPGGVGPMTVAMLMNNTVLSAERYI 117 (542)
Q Consensus 79 df~~v~~~a~~iTPVPGGVGpmTvamL~~N~v~aa~~~~ 117 (542)
||++++++|+|||||||||||||+||||+|+++++++++
T Consensus 244 df~~v~~~a~~iTPVPGGVGp~T~a~L~~N~~~a~~~~~ 282 (284)
T PRK14179 244 DFDEVAEVASYITPVPGGVGPMTITMLMEQTYQAALRSL 282 (284)
T ss_pred cHHHHHhhccEecCCCCCchHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999997764
No 40
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=100.00 E-value=1.4e-34 Score=292.97 Aligned_cols=109 Identities=45% Similarity=0.682 Sum_probs=104.3
Q ss_pred CchHHHHHHHhCCCe--eecCCCCCHHHHhhhCCEEEEeccCCCceecCcccCCeEEEeccccccCCCccCCCCeeeecc
Q psy7978 1 MWSSLQTFWLWVLAN--PSMSKTKNIQDVVKSADILVVGIGQPEYVKGDWIKPGAVVIDCGINSVPDASKASGQKLVGDV 78 (542)
Q Consensus 1 vgkPLa~LL~~~~AT--icHs~T~nl~~~~k~ADIVIsAvG~p~lI~~d~ik~GavVIDVGin~~~d~~~~~~~kl~GDV 78 (542)
+|||||+||.++||| +|||+|+||++++++|||||+|+|+|+||+++|||+|++|||||+|++ ++ |++|||
T Consensus 164 vGrpla~lL~~~~atVtv~hs~t~~L~~~~~~ADIvI~Avgk~~lv~~~~vk~GavVIDVgi~~~-~g------kl~GDv 236 (279)
T PRK14178 164 VGRPMAALLLNADATVTICHSKTENLKAELRQADILVSAAGKAGFITPDMVKPGATVIDVGINQV-NG------KLCGDV 236 (279)
T ss_pred ccHHHHHHHHhCCCeeEEEecChhHHHHHHhhCCEEEECCCcccccCHHHcCCCcEEEEeecccc-CC------CCcCCc
Confidence 699999999999999 999999999999999999999999999999999999999999999985 22 799999
Q ss_pred ccccccccceEeecCCCCcchhhHHHHHHhHHHHHHHH
Q psy7978 79 QYAEAKNVASWITPVPGGVGPMTVAMLMNNTVLSAERY 116 (542)
Q Consensus 79 df~~v~~~a~~iTPVPGGVGpmTvamL~~N~v~aa~~~ 116 (542)
||++++++|++||||||||||||++|||+|++++++++
T Consensus 237 df~~~~~~a~~iTPVPGGVGp~T~a~L~~N~~~a~~~~ 274 (279)
T PRK14178 237 DFDAVKEIAGAITPVPGGVGPMTIATLMENTFDAAKMR 274 (279)
T ss_pred cHHHHHhhccCcCCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999998763
No 41
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=100.00 E-value=2.7e-34 Score=291.95 Aligned_cols=111 Identities=39% Similarity=0.625 Sum_probs=105.0
Q ss_pred CchHHHHHHHhCCCe--eecCCCCCHHHHhhhCCEEEEeccCCCceecCcccCCeEEEeccccccCCCccCCCCeeeecc
Q psy7978 1 MWSSLQTFWLWVLAN--PSMSKTKNIQDVVKSADILVVGIGQPEYVKGDWIKPGAVVIDCGINSVPDASKASGQKLVGDV 78 (542)
Q Consensus 1 vgkPLa~LL~~~~AT--icHs~T~nl~~~~k~ADIVIsAvG~p~lI~~d~ik~GavVIDVGin~~~d~~~~~~~kl~GDV 78 (542)
||+|+|+||+++||| +|||+|+||++++++|||||+|+|+|++|+++|||+|++|||||+|+..++ |+||||
T Consensus 170 VG~pla~lL~~~gatVtv~~s~t~~l~~~~~~ADIVIsAvg~p~~i~~~~vk~gavVIDvGi~~~~~g------kl~GDv 243 (286)
T PRK14175 170 VGQPVSKLLLQKNASVTILHSRSKDMASYLKDADVIVSAVGKPGLVTKDVVKEGAVIIDVGNTPDENG------KLKGDV 243 (286)
T ss_pred hHHHHHHHHHHCCCeEEEEeCCchhHHHHHhhCCEEEECCCCCcccCHHHcCCCcEEEEcCCCcCCCC------CeecCc
Confidence 699999999999999 999999999999999999999999999999999999999999999984331 799999
Q ss_pred ccccccccceEeecCCCCcchhhHHHHHHhHHHHHHHHH
Q psy7978 79 QYAEAKNVASWITPVPGGVGPMTVAMLMNNTVLSAERYI 117 (542)
Q Consensus 79 df~~v~~~a~~iTPVPGGVGpmTvamL~~N~v~aa~~~~ 117 (542)
||++++++|++||||||||||||++|||+|++++++++.
T Consensus 244 d~~~~~~~a~~iTPVPGGVGp~T~a~L~~n~~~a~~~~~ 282 (286)
T PRK14175 244 DYDAVKEIAGAITPVPGGVGPLTITMVLNNTLLAEKMRR 282 (286)
T ss_pred cHHHHHhhccCcCCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999997643
No 42
>KOG0089|consensus
Probab=100.00 E-value=3.5e-34 Score=285.89 Aligned_cols=118 Identities=45% Similarity=0.630 Sum_probs=111.9
Q ss_pred CchHHHHHHHhC--------CCe--eecCCCCC--HHHHhhhCCEEEEeccCCCceecCcccCCeEEEeccccccCCCcc
Q psy7978 1 MWSSLQTFWLWV--------LAN--PSMSKTKN--IQDVVKSADILVVGIGQPEYVKGDWIKPGAVVIDCGINSVPDASK 68 (542)
Q Consensus 1 vgkPLa~LL~~~--------~AT--icHs~T~n--l~~~~k~ADIVIsAvG~p~lI~~d~ik~GavVIDVGin~~~d~~~ 68 (542)
||+|+|+||.+. +|| ++|++|++ ++++++.|||+|+|+|+|++|++||||+||.|||||||++.|+.+
T Consensus 178 Vg~P~A~LL~~dG~~~~~~~datVti~hr~t~~~~lk~ht~~adivi~a~g~p~li~~d~Ik~Ga~vidvgin~v~dp~~ 257 (309)
T KOG0089|consen 178 VGMPLALLLHNDGAHVYSVDDATVTIFHRYTSKPQLKHHTRDADIVISAVGIPNLITSDMIKPGAAVIDVGINRVHDPST 257 (309)
T ss_pred ccchHHHHHhhcCCcccccCcceEEEEEcCCCchhHHHHHHhcceeehhcCCCcccccceeecCceeEecCCCccccccc
Confidence 799999999999 666 99999985 699999999999999999999999999999999999999999887
Q ss_pred CCCCeeeeccccccccccceEeecCCCCcchhhHHHHHHhHHHHHHHHHh
Q psy7978 69 ASGQKLVGDVQYAEAKNVASWITPVPGGVGPMTVAMLMNNTVLSAERYID 118 (542)
Q Consensus 69 ~~~~kl~GDVdf~~v~~~a~~iTPVPGGVGpmTvamL~~N~v~aa~~~~~ 118 (542)
..++||+||||||++..+|++||||||||||||+||||+||++++++.+.
T Consensus 258 a~~~klvgdvdFe~~~~kag~itpVPggvGpmTiAMLl~Ntl~~ak~v~~ 307 (309)
T KOG0089|consen 258 AVGIKLVGDVDFEEASKKAGAITPVPGGVGPMTIAMLLRNTLRAAKRVFL 307 (309)
T ss_pred ceeeEEeeeccHHHhhhhcCccccCCCCCCchhHHHHHHHHHHHHHHHhc
Confidence 77899999999999999999999999999999999999999999998654
No 43
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=100.00 E-value=1.2e-33 Score=288.68 Aligned_cols=117 Identities=42% Similarity=0.702 Sum_probs=109.3
Q ss_pred CchHHHHHHHhCCCe--eecCCCCCHHHHhhhCCEEEEeccCCCceecCcccCCeEEEeccccccCCCccCCCCeeeecc
Q psy7978 1 MWSSLQTFWLWVLAN--PSMSKTKNIQDVVKSADILVVGIGQPEYVKGDWIKPGAVVIDCGINSVPDASKASGQKLVGDV 78 (542)
Q Consensus 1 vgkPLa~LL~~~~AT--icHs~T~nl~~~~k~ADIVIsAvG~p~lI~~d~ik~GavVIDVGin~~~d~~~~~~~kl~GDV 78 (542)
||+|||++|+++||| +||++|+++++++++|||||+|+|+|++|+++|+|+|++|||||||++.+. + .+|+||||
T Consensus 171 vG~PmA~~L~~~gatVtv~~~~t~~l~e~~~~ADIVIsavg~~~~v~~~~ik~GaiVIDvgin~~~~~-g--~~kl~GDv 247 (301)
T PRK14194 171 VGKPMAALLLQAHCSVTVVHSRSTDAKALCRQADIVVAAVGRPRLIDADWLKPGAVVIDVGINRIDDD-G--RSRLVGDV 247 (301)
T ss_pred cHHHHHHHHHHCCCEEEEECCCCCCHHHHHhcCCEEEEecCChhcccHhhccCCcEEEEecccccCCC-C--Ccceeccc
Confidence 799999999999999 999999999999999999999999999999999999999999999996431 1 13799999
Q ss_pred ccccccccceEeecCCCCcchhhHHHHHHhHHHHHHHHHhhh
Q psy7978 79 QYAEAKNVASWITPVPGGVGPMTVAMLMNNTVLSAERYIDRL 120 (542)
Q Consensus 79 df~~v~~~a~~iTPVPGGVGpmTvamL~~N~v~aa~~~~~~~ 120 (542)
||+++.++|++||||||||||||+||||+|+++++++++..+
T Consensus 248 df~~~~~~a~~iTPVPGGVGp~Tva~L~~N~~~a~~~~~~~~ 289 (301)
T PRK14194 248 DFDSALPVVSAITPVPGGVGPMTIAFLMKNTVTAARLQAHAQ 289 (301)
T ss_pred chHHHHhhcceecCCCCchhHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999888764
No 44
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=99.98 E-value=4.1e-33 Score=284.55 Aligned_cols=117 Identities=51% Similarity=0.827 Sum_probs=107.1
Q ss_pred CchHHHHHHHhCCCe--eecCCCCCHHHHhhhCCEEEEeccCCCceecCcccCCeEEEeccccccCCCccCCCC-eeeec
Q psy7978 1 MWSSLQTFWLWVLAN--PSMSKTKNIQDVVKSADILVVGIGQPEYVKGDWIKPGAVVIDCGINSVPDASKASGQ-KLVGD 77 (542)
Q Consensus 1 vgkPLa~LL~~~~AT--icHs~T~nl~~~~k~ADIVIsAvG~p~lI~~d~ik~GavVIDVGin~~~d~~~~~~~-kl~GD 77 (542)
||+|||.+|+++|+| +||++|+++++++++|||||+|+|+|++|+++|+|+|++|||+|+|++.+.++++|+ |+|||
T Consensus 170 mG~PmA~~L~~~g~tVtv~~~rT~~l~e~~~~ADIVIsavg~~~~v~~~~lk~GavVIDvGin~~~~~~~~~g~~~l~GD 249 (296)
T PRK14188 170 VGKPMAQLLLAANATVTIAHSRTRDLPAVCRRADILVAAVGRPEMVKGDWIKPGATVIDVGINRIPAPEKGEGKTRLVGD 249 (296)
T ss_pred hHHHHHHHHHhCCCEEEEECCCCCCHHHHHhcCCEEEEecCChhhcchheecCCCEEEEcCCcccCCccccCCCceeeCC
Confidence 699999999999999 999999999999999999999999999999999999999999999996422212233 79999
Q ss_pred cccccccccceEeecCCCCcchhhHHHHHHhHHHHHHHHH
Q psy7978 78 VQYAEAKNVASWITPVPGGVGPMTVAMLMNNTVLSAERYI 117 (542)
Q Consensus 78 Vdf~~v~~~a~~iTPVPGGVGpmTvamL~~N~v~aa~~~~ 117 (542)
|||++++++|+|||||||||||||++|||+|++++++++.
T Consensus 250 vd~~~v~~~a~~iTPVPGGVGp~T~a~L~~N~~~a~~~~~ 289 (296)
T PRK14188 250 VAFAEAAEVAGAITPVPGGVGPMTIACLLANTLTAACRAA 289 (296)
T ss_pred CCHHHHHhhccEecCCCCChhHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999997753
No 45
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=99.97 E-value=3.3e-32 Score=276.42 Aligned_cols=110 Identities=42% Similarity=0.678 Sum_probs=104.6
Q ss_pred CchHHHHHHHhCCCe--eecCCCCCHHHHhhhCCEEEEeccCCCceecCcccCCeEEEeccccccCCCccCCCCeeeecc
Q psy7978 1 MWSSLQTFWLWVLAN--PSMSKTKNIQDVVKSADILVVGIGQPEYVKGDWIKPGAVVIDCGINSVPDASKASGQKLVGDV 78 (542)
Q Consensus 1 vgkPLa~LL~~~~AT--icHs~T~nl~~~~k~ADIVIsAvG~p~lI~~d~ik~GavVIDVGin~~~d~~~~~~~kl~GDV 78 (542)
+|||+++||+++||| +||++|++|.+.+++|||||+|+|+|++|+.+|||+|++|||||+|++++ ++||||
T Consensus 171 vGkpia~~L~~~gatVtv~~~~t~~L~~~~~~aDIvI~AtG~~~~v~~~~lk~gavViDvg~n~~~~-------~~~GDv 243 (283)
T PRK14192 171 LGKPMAMMLLNANATVTICHSRTQNLPELVKQADIIVGAVGKPELIKKDWIKQGAVVVDAGFHPRDG-------GGVGDI 243 (283)
T ss_pred HHHHHHHHHHhCCCEEEEEeCCchhHHHHhccCCEEEEccCCCCcCCHHHcCCCCEEEEEEEeecCC-------CCcccc
Confidence 699999999999999 99999999999999999999999999999999999999999999998532 589999
Q ss_pred ccccccccceEeecCCCCcchhhHHHHHHhHHHHHHHHH
Q psy7978 79 QYAEAKNVASWITPVPGGVGPMTVAMLMNNTVLSAERYI 117 (542)
Q Consensus 79 df~~v~~~a~~iTPVPGGVGpmTvamL~~N~v~aa~~~~ 117 (542)
||+++++++++||||||||||||++|||+|+++++++++
T Consensus 244 d~~~~~~~a~~itPvPGGVGp~T~a~L~~n~~~~~~~~~ 282 (283)
T PRK14192 244 ELQGIEEIASAYTPVPGGVGPMTINTLIRQTVEAAEKAL 282 (283)
T ss_pred cHHHhhccceEeCCCCCcChHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999997754
No 46
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=99.96 E-value=1.8e-30 Score=239.53 Aligned_cols=98 Identities=41% Similarity=0.560 Sum_probs=93.0
Q ss_pred CchHHHHHHHhCCCe--eecCCCCCHHHHhhhCCEEEEeccCCCceecCcccCCeEEEeccccccCCCccCCCCeeeecc
Q psy7978 1 MWSSLQTFWLWVLAN--PSMSKTKNIQDVVKSADILVVGIGQPEYVKGDWIKPGAVVIDCGINSVPDASKASGQKLVGDV 78 (542)
Q Consensus 1 vgkPLa~LL~~~~AT--icHs~T~nl~~~~k~ADIVIsAvG~p~lI~~d~ik~GavVIDVGin~~~d~~~~~~~kl~GDV 78 (542)
+|+||++||+++||| +||++|+|+++++++|||||+|+|+|++|+++|||||++|||||+|+.
T Consensus 40 vG~pla~lL~~~gatV~~~~~~t~~l~~~v~~ADIVvsAtg~~~~i~~~~ikpGa~Vidvg~~~~--------------- 104 (140)
T cd05212 40 VGAPLQCLLQRDGATVYSCDWKTIQLQSKVHDADVVVVGSPKPEKVPTEWIKPGATVINCSPTKL--------------- 104 (140)
T ss_pred HHHHHHHHHHHCCCEEEEeCCCCcCHHHHHhhCCEEEEecCCCCccCHHHcCCCCEEEEcCCCcc---------------
Confidence 589999999999999 999999999999999999999999999999999999999999999972
Q ss_pred ccccccccceEeecCCCCcchhhHHHHHHhHHHHH
Q psy7978 79 QYAEAKNVASWITPVPGGVGPMTVAMLMNNTVLSA 113 (542)
Q Consensus 79 df~~v~~~a~~iTPVPGGVGpmTvamL~~N~v~aa 113 (542)
+|+++.++|++||||||||||||++|||+|+++++
T Consensus 105 ~~~~~~~~a~~~tPvpgGVGp~T~a~L~~n~~~~~ 139 (140)
T cd05212 105 SGDDVKESASLYVPMTGGVGKLTVAMRMQNMVRSV 139 (140)
T ss_pred cchhhHhhceEEcCCCCCchHHHHHHHHHHHHHhc
Confidence 25788999999999999999999999999999875
No 47
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=99.96 E-value=9.1e-30 Score=246.08 Aligned_cols=99 Identities=23% Similarity=0.350 Sum_probs=92.5
Q ss_pred CchHHHHHHHhCCCe--ee---------------cCCC--CC----HHHHhhhCCEEEEeccCCCc-eecCcccCCeEEE
Q psy7978 1 MWSSLQTFWLWVLAN--PS---------------MSKT--KN----IQDVVKSADILVVGIGQPEY-VKGDWIKPGAVVI 56 (542)
Q Consensus 1 vgkPLa~LL~~~~AT--ic---------------Hs~T--~n----l~~~~k~ADIVIsAvG~p~l-I~~d~ik~GavVI 56 (542)
||||||+||+++||| +| ||+| +| +++++++|||||+|+|+|+| |++||||||++||
T Consensus 74 VGkPla~lL~~~~AtVti~~~~~~~~~~~~~~~~hs~t~~~~~~~~l~~~~~~ADIVIsAvG~~~~~i~~d~ik~GavVI 153 (197)
T cd01079 74 VGRPLAALLANDGARVYSVDINGIQVFTRGESIRHEKHHVTDEEAMTLDCLSQSDVVITGVPSPNYKVPTELLKDGAICI 153 (197)
T ss_pred chHHHHHHHHHCCCEEEEEecCcccccccccccccccccccchhhHHHHHhhhCCEEEEccCCCCCccCHHHcCCCcEEE
Confidence 799999999999999 99 7888 57 89999999999999999999 9999999999999
Q ss_pred eccccccCCCccCCCCeeeeccccccccccceEeecCCCCcchhhHHHHHHhHHHHHHHHH
Q psy7978 57 DCGINSVPDASKASGQKLVGDVQYAEAKNVASWITPVPGGVGPMTVAMLMNNTVLSAERYI 117 (542)
Q Consensus 57 DVGin~~~d~~~~~~~kl~GDVdf~~v~~~a~~iTPVPGGVGpmTvamL~~N~v~aa~~~~ 117 (542)
|||+|+ |+| ++++++|++|||| |||||+||||+|+++++++++
T Consensus 154 DVGi~~--------------dvd-~~v~~~as~iTPv---VGpvTva~L~~Nlv~~~~~~~ 196 (197)
T cd01079 154 NFASIK--------------NFE-PSVKEKASIYVPS---IGKVTIAMLLRNLLRLYHNQH 196 (197)
T ss_pred EcCCCc--------------Ccc-HhHHhhcCEeCCC---cCHHHHHHHHHHHHHHHHHhc
Confidence 999985 455 7899999999998 999999999999999987764
No 48
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=99.90 E-value=1.6e-24 Score=205.31 Aligned_cols=111 Identities=59% Similarity=0.852 Sum_probs=103.1
Q ss_pred CchHHHHHHHhCCCe--eecCCCCCHHHHhhhCCEEEEeccCCCceecCcccCCeEEEeccccccCCCccCCCCeeeecc
Q psy7978 1 MWSSLQTFWLWVLAN--PSMSKTKNIQDVVKSADILVVGIGQPEYVKGDWIKPGAVVIDCGINSVPDASKASGQKLVGDV 78 (542)
Q Consensus 1 vgkPLa~LL~~~~AT--icHs~T~nl~~~~k~ADIVIsAvG~p~lI~~d~ik~GavVIDVGin~~~d~~~~~~~kl~GDV 78 (542)
+|+|++.+|.++||+ +||+++.++.+++++|||||+|+|.|++|+.+|++++.+|||+++.+.-| ++++|+|||+
T Consensus 56 ~G~~~a~~L~~~g~~V~v~~r~~~~l~~~l~~aDiVIsat~~~~ii~~~~~~~~~viIDla~prdvd---~~~~~~~G~~ 132 (168)
T cd01080 56 VGKPLAALLLNRNATVTVCHSKTKNLKEHTKQADIVIVAVGKPGLVKGDMVKPGAVVIDVGINRVPD---KSGGKLVGDV 132 (168)
T ss_pred HHHHHHHHHhhCCCEEEEEECCchhHHHHHhhCCEEEEcCCCCceecHHHccCCeEEEEccCCCccc---ccCCCeeCCc
Confidence 388999999999998 99999999999999999999999999999999999999999999998654 2345899999
Q ss_pred ccccccccceEeecCCCCcchhhHHHHHHhHHHHHH
Q psy7978 79 QYAEAKNVASWITPVPGGVGPMTVAMLMNNTVLSAE 114 (542)
Q Consensus 79 df~~v~~~a~~iTPVPGGVGpmTvamL~~N~v~aa~ 114 (542)
||+.+++++.++||+||||||+|+++||+|++++++
T Consensus 133 d~~~~~~~~~~~~~~pggvgp~t~a~l~~n~~~~~~ 168 (168)
T cd01080 133 DFESAKEKASAITPVPGGVGPMTVAMLMKNTVEAAK 168 (168)
T ss_pred CHHHHHhhccCcCCCCCcChHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999998763
No 49
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=98.66 E-value=4.7e-08 Score=100.38 Aligned_cols=102 Identities=21% Similarity=0.236 Sum_probs=80.3
Q ss_pred CchHHHHHHHhCCCe--eecCCC----------------CCHHHHhhhCCEEEEeccCCCceecCc---ccCCeEEEecc
Q psy7978 1 MWSSLQTFWLWVLAN--PSMSKT----------------KNIQDVVKSADILVVGIGQPEYVKGDW---IKPGAVVIDCG 59 (542)
Q Consensus 1 vgkPLa~LL~~~~AT--icHs~T----------------~nl~~~~k~ADIVIsAvG~p~lI~~d~---ik~GavVIDVG 59 (542)
+|++++.+|.+.||+ +++.++ .++.+.++++||||.+++. .+++.++ +++|++|||++
T Consensus 163 iG~~~a~~L~~~Ga~V~v~~r~~~~~~~~~~~G~~~~~~~~l~~~l~~aDiVI~t~p~-~~i~~~~l~~~~~g~vIIDla 241 (296)
T PRK08306 163 TGMTLARTLKALGANVTVGARKSAHLARITEMGLSPFHLSELAEEVGKIDIIFNTIPA-LVLTKEVLSKMPPEALIIDLA 241 (296)
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCeeecHHHHHHHhCCCCEEEECCCh-hhhhHHHHHcCCCCcEEEEEc
Confidence 488999999999998 554432 1466788999999999864 4567664 69999999999
Q ss_pred ccccCCCccCCCCeeeecccccccccc---ceEeecCCCCcchhhHHHHHHhHHHHHHHH
Q psy7978 60 INSVPDASKASGQKLVGDVQYAEAKNV---ASWITPVPGGVGPMTVAMLMNNTVLSAERY 116 (542)
Q Consensus 60 in~~~d~~~~~~~kl~GDVdf~~v~~~---a~~iTPVPGGVGpmTvamL~~N~v~aa~~~ 116 (542)
.+. |++||+.+++. +.+.++.||+|+|+|.+.++.|.+...-..
T Consensus 242 ~~p-------------ggtd~~~a~~~Gv~~~~~~~lpg~vap~ta~~~~~~~i~~~l~~ 288 (296)
T PRK08306 242 SKP-------------GGTDFEYAEKRGIKALLAPGLPGKVAPKTAGQILANVLSQLLAE 288 (296)
T ss_pred cCC-------------CCcCeeehhhCCeEEEEECCCCccCCHHHHHHHHHHHHHHHHHH
Confidence 874 35778766554 666799999999999999999988766543
No 50
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=98.14 E-value=3e-06 Score=86.95 Aligned_cols=98 Identities=20% Similarity=0.297 Sum_probs=73.5
Q ss_pred CchHHHHHHHhCCCe-eecCCCC-----------------CHHHHhhhCCEEEEeccCCCceecC---cccCCeEEEecc
Q psy7978 1 MWSSLQTFWLWVLAN-PSMSKTK-----------------NIQDVVKSADILVVGIGQPEYVKGD---WIKPGAVVIDCG 59 (542)
Q Consensus 1 vgkPLa~LL~~~~AT-icHs~T~-----------------nl~~~~k~ADIVIsAvG~p~lI~~d---~ik~GavVIDVG 59 (542)
+|+.++..|...|++ .++.++. ++.+.++++|+||.+++.. +++.+ .+++++++||++
T Consensus 162 iG~avA~~L~~~G~~V~v~~R~~~~~~~~~~~g~~~~~~~~l~~~l~~aDiVint~P~~-ii~~~~l~~~k~~aliIDla 240 (287)
T TIGR02853 162 TGMTIARTFSALGARVFVGARSSADLARITEMGLIPFPLNKLEEKVAEIDIVINTIPAL-VLTADVLSKLPKHAVIIDLA 240 (287)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeeecHHHHHHHhccCCEEEECCChH-HhCHHHHhcCCCCeEEEEeC
Confidence 588999999999988 3333332 3567789999999998654 45544 478999999999
Q ss_pred ccccCCCccCCCCeeeeccccccccccc--eEeec-CCCCcchhhHHHHHHhHHHH
Q psy7978 60 INSVPDASKASGQKLVGDVQYAEAKNVA--SWITP-VPGGVGPMTVAMLMNNTVLS 112 (542)
Q Consensus 60 in~~~d~~~~~~~kl~GDVdf~~v~~~a--~~iTP-VPGGVGpmTvamL~~N~v~a 112 (542)
.+. |.+||+.+++.- ..+.| .||.|+|.|.+.++.|++..
T Consensus 241 s~P-------------g~tdf~~Ak~~G~~a~~~~glPg~~ap~ta~~i~~~~~~~ 283 (287)
T TIGR02853 241 SKP-------------GGTDFEYAKKRGIKALLAPGLPGIVAPKTAGKILANVLSE 283 (287)
T ss_pred cCC-------------CCCCHHHHHHCCCEEEEeCCCCcccCchhHHHHHHHHHHH
Confidence 864 356776554432 33456 89999999999999999864
No 51
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=97.47 E-value=7.2e-05 Score=82.04 Aligned_cols=89 Identities=18% Similarity=0.132 Sum_probs=68.8
Q ss_pred CchHHHHHHHhCCCe--eecCC-------------CCCHHHHhhhCCEEEEeccCCCceecCcc---cCCeEEEeccccc
Q psy7978 1 MWSSLQTFWLWVLAN--PSMSK-------------TKNIQDVVKSADILVVGIGQPEYVKGDWI---KPGAVVIDCGINS 62 (542)
Q Consensus 1 vgkPLa~LL~~~~AT--icHs~-------------T~nl~~~~k~ADIVIsAvG~p~lI~~d~i---k~GavVIDVGin~ 62 (542)
||++++..|...||+ +|++. +.++.+.++.|||||+++|.+++|+.+++ |+|+++|++|...
T Consensus 265 IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~~~G~~~~~leell~~ADIVI~atGt~~iI~~e~~~~MKpGAiLINvGr~d 344 (476)
T PTZ00075 265 VGKGCAQALRGFGARVVVTEIDPICALQAAMEGYQVVTLEDVVETADIFVTATGNKDIITLEHMRRMKNNAIVGNIGHFD 344 (476)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCchhHHHHHhcCceeccHHHHHhcCCEEEECCCcccccCHHHHhccCCCcEEEEcCCCc
Confidence 699999999999999 55433 23688899999999999999999999888 9999999999874
Q ss_pred cCCCccCCCCeeeeccccccccccceEee
Q psy7978 63 VPDASKASGQKLVGDVQYAEAKNVASWIT 91 (542)
Q Consensus 63 ~~d~~~~~~~kl~GDVdf~~v~~~a~~iT 91 (542)
.+... ..-+..+|+|..++++.+..+|
T Consensus 345 ~Ei~i--~aL~~~~~vdv~evep~v~~~~ 371 (476)
T PTZ00075 345 NEIQV--AELEAYPGIEIVEIKPQVDRYT 371 (476)
T ss_pred hHHhH--HHHHhcCCceeecccCCCCeEE
Confidence 22110 0113456888777777776666
No 52
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=96.20 E-value=0.0053 Score=51.81 Aligned_cols=46 Identities=26% Similarity=0.118 Sum_probs=39.4
Q ss_pred CchHHHHHHHhCC-Ce--eecCCCCCHHHHhhhCCEEEEeccCCCceec---CcccCCeEEEec
Q psy7978 1 MWSSLQTFWLWVL-AN--PSMSKTKNIQDVVKSADILVVGIGQPEYVKG---DWIKPGAVVIDC 58 (542)
Q Consensus 1 vgkPLa~LL~~~~-AT--icHs~T~nl~~~~k~ADIVIsAvG~p~lI~~---d~ik~GavVIDV 58 (542)
+|++++.+|.+.+ .+ ++++ ||+|+++|.++++++ .+++++.+|||+
T Consensus 34 ~g~~~a~~l~~~~~~~v~v~~r------------di~i~~~~~~~~~~~~~~~~~~~~~~v~~~ 85 (86)
T cd05191 34 VGKGIAKLLADEGGKKVVLCDR------------DILVTATPAGVPVLEEATAKINEGAVVIDL 85 (86)
T ss_pred HHHHHHHHHHHcCCCEEEEEcC------------CEEEEcCCCCCCchHHHHHhcCCCCEEEec
Confidence 4789999999984 44 5544 999999999999988 899999999996
No 53
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=96.06 E-value=0.0061 Score=58.56 Aligned_cols=61 Identities=18% Similarity=0.309 Sum_probs=45.0
Q ss_pred CchHHHHHHHhCCCe--eecCC-------------CCCHHHHhhhCCEEEEeccCCCceecCcc---cCCeEEEecccc
Q psy7978 1 MWSSLQTFWLWVLAN--PSMSK-------------TKNIQDVVKSADILVVGIGQPEYVKGDWI---KPGAVVIDCGIN 61 (542)
Q Consensus 1 vgkPLa~LL~~~~AT--icHs~-------------T~nl~~~~k~ADIVIsAvG~p~lI~~d~i---k~GavVIDVGin 61 (542)
+||-+|..|...||. ++-.. +..+.+.+++|||+|+|+|..+.|+.+++ |+|++|.++|-.
T Consensus 34 vG~g~A~~lr~~Ga~V~V~e~DPi~alqA~~dGf~v~~~~~a~~~adi~vtaTG~~~vi~~e~~~~mkdgail~n~Gh~ 112 (162)
T PF00670_consen 34 VGKGIARALRGLGARVTVTEIDPIRALQAAMDGFEVMTLEEALRDADIFVTATGNKDVITGEHFRQMKDGAILANAGHF 112 (162)
T ss_dssp HHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTT-EEE-HHHHTTT-SEEEE-SSSSSSB-HHHHHHS-TTEEEEESSSS
T ss_pred ccHHHHHHHhhCCCEEEEEECChHHHHHhhhcCcEecCHHHHHhhCCEEEECCCCccccCHHHHHHhcCCeEEeccCcC
Confidence 488999999999998 32111 24688999999999999999999997765 999999999965
No 54
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=95.13 E-value=0.072 Score=56.86 Aligned_cols=91 Identities=25% Similarity=0.408 Sum_probs=60.0
Q ss_pred CHHHHhhhCCEEEEecc---C--CCceecCcc---cCCeEEEeccccccCCCccCCCCeeeeccccccccc--c-ceEee
Q psy7978 23 NIQDVVKSADILVVGIG---Q--PEYVKGDWI---KPGAVVIDCGINSVPDASKASGQKLVGDVQYAEAKN--V-ASWIT 91 (542)
Q Consensus 23 nl~~~~k~ADIVIsAvG---~--p~lI~~d~i---k~GavVIDVGin~~~d~~~~~~~kl~GDVdf~~v~~--~-a~~iT 91 (542)
++.+++++|||||.+++ . |.+|+.+++ |+|++|||+++.. .++-. ..+ .+..|++.+.. + ...+.
T Consensus 223 ~l~~~l~~aDvVI~a~~~~g~~~p~lit~~~l~~mk~g~vIvDva~d~--GG~~e-~~~-~t~~d~p~~~~~Gv~~~~v~ 298 (370)
T TIGR00518 223 EIEDAVKRADLLIGAVLIPGAKAPKLVSNSLVAQMKPGAVIVDVAIDQ--GGCVE-TSR-PTTHDQPTYAVHDVVHYCVA 298 (370)
T ss_pred HHHHHHccCCEEEEccccCCCCCCcCcCHHHHhcCCCCCEEEEEecCC--CCCcc-CCc-CCCCCCCEEEECCeEEEEeC
Confidence 46777889999999984 3 667887776 7999999999764 21100 111 33334333221 1 23345
Q ss_pred cCCCCcchhhHHHHHHhHHHHHHHHHh
Q psy7978 92 PVPGGVGPMTVAMLMNNTVLSAERYID 118 (542)
Q Consensus 92 PVPGGVGpmTvamL~~N~v~aa~~~~~ 118 (542)
=.||-+ |.|.+.++.|.+..+-..+.
T Consensus 299 nlP~~~-p~~aS~~~~~~l~~~l~~~~ 324 (370)
T TIGR00518 299 NMPGAV-PKTSTYALTNATMPYVLELA 324 (370)
T ss_pred Cccccc-HHHHHHHHHHHHHHHHHHHH
Confidence 679999 99999999988876655544
No 55
>PRK14982 acyl-ACP reductase; Provisional
Probab=93.58 E-value=0.13 Score=54.66 Aligned_cols=40 Identities=23% Similarity=0.343 Sum_probs=34.6
Q ss_pred HHHHhhhCCEEEEeccCCCc--eecCcccCCeEEEecccccc
Q psy7978 24 IQDVVKSADILVVGIGQPEY--VKGDWIKPGAVVIDCGINSV 63 (542)
Q Consensus 24 l~~~~k~ADIVIsAvG~p~l--I~~d~ik~GavVIDVGin~~ 63 (542)
+.+.+.++|+||++++.|.. +++++++++.++||++.-+.
T Consensus 209 l~~~l~~aDiVv~~ts~~~~~~I~~~~l~~~~~viDiAvPRD 250 (340)
T PRK14982 209 LEEALPEADIVVWVASMPKGVEIDPETLKKPCLMIDGGYPKN 250 (340)
T ss_pred HHHHHccCCEEEECCcCCcCCcCCHHHhCCCeEEEEecCCCC
Confidence 44677789999999999776 88999999999999998763
No 56
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=93.33 E-value=0.087 Score=54.93 Aligned_cols=41 Identities=24% Similarity=0.545 Sum_probs=29.4
Q ss_pred CCHHHHhhhCCEEEEeccCCC---ceecCcccCCeEEEeccccc
Q psy7978 22 KNIQDVVKSADILVVGIGQPE---YVKGDWIKPGAVVIDCGINS 62 (542)
Q Consensus 22 ~nl~~~~k~ADIVIsAvG~p~---lI~~d~ik~GavVIDVGin~ 62 (542)
.+.++.++.|||||+|+.... +++.+|+++|+.|+-||.+.
T Consensus 184 ~~~~~av~~aDii~taT~s~~~~P~~~~~~l~~g~hi~~iGs~~ 227 (313)
T PF02423_consen 184 DSAEEAVRGADIIVTATPSTTPAPVFDAEWLKPGTHINAIGSYT 227 (313)
T ss_dssp SSHHHHHTTSSEEEE----SSEEESB-GGGS-TT-EEEE-S-SS
T ss_pred cchhhhcccCCEEEEccCCCCCCccccHHHcCCCcEEEEecCCC
Confidence 468999999999999999998 89999999999999999875
No 57
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=92.77 E-value=0.094 Score=57.38 Aligned_cols=62 Identities=15% Similarity=0.208 Sum_probs=49.7
Q ss_pred CchHHHHHHHhCCCe--eecCC-------------CCCHHHHhhhCCEEEEeccCCCceecCc---ccCCeEEEeccccc
Q psy7978 1 MWSSLQTFWLWVLAN--PSMSK-------------TKNIQDVVKSADILVVGIGQPEYVKGDW---IKPGAVVIDCGINS 62 (542)
Q Consensus 1 vgkPLa~LL~~~~AT--icHs~-------------T~nl~~~~k~ADIVIsAvG~p~lI~~d~---ik~GavVIDVGin~ 62 (542)
||+-++..|...|++ +|... ..++.+.++.|||||.++|.+++|+.++ .|+|++++++|...
T Consensus 223 IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~~G~~v~~l~eal~~aDVVI~aTG~~~vI~~~~~~~mK~GailiNvG~~d 302 (425)
T PRK05476 223 VGKGCAQRLRGLGARVIVTEVDPICALQAAMDGFRVMTMEEAAELGDIFVTATGNKDVITAEHMEAMKDGAILANIGHFD 302 (425)
T ss_pred HHHHHHHHHHhCCCEEEEEcCCchhhHHHHhcCCEecCHHHHHhCCCEEEECCCCHHHHHHHHHhcCCCCCEEEEcCCCC
Confidence 578889999999998 33221 1257788899999999999999998655 59999999999754
No 58
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=92.72 E-value=0.11 Score=47.55 Aligned_cols=61 Identities=13% Similarity=0.175 Sum_probs=43.2
Q ss_pred chHHHHHHHhCCCe---eecCC--------------------CCCHHHHhhhCCEEEEeccCCC-ceecCcccCC----e
Q psy7978 2 WSSLQTFWLWVLAN---PSMSK--------------------TKNIQDVVKSADILVVGIGQPE-YVKGDWIKPG----A 53 (542)
Q Consensus 2 gkPLa~LL~~~~AT---icHs~--------------------T~nl~~~~k~ADIVIsAvG~p~-lI~~d~ik~G----a 53 (542)
||..+..|..+|++ ++... ..++.+...++||||+|++.+. .++.+++++. .
T Consensus 24 ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~~~~~~~~~~~~~~~~~~~~DivI~aT~~~~~~i~~~~~~~~~~~~~ 103 (135)
T PF01488_consen 24 ARAVAAALAALGAKEITIVNRTPERAEALAEEFGGVNIEAIPLEDLEEALQEADIVINATPSGMPIITEEMLKKASKKLR 103 (135)
T ss_dssp HHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHTGCSEEEEEGGGHCHHHHTESEEEE-SSTTSTSSTHHHHTTTCHHCS
T ss_pred HHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcCccccceeeHHHHHHHHhhCCeEEEecCCCCcccCHHHHHHHHhhhh
Confidence 56677777777776 33211 1246667889999999999997 5899999999 5
Q ss_pred EEEeccccc
Q psy7978 54 VVIDCGINS 62 (542)
Q Consensus 54 vVIDVGin~ 62 (542)
+|+|++.-+
T Consensus 104 ~v~Dla~Pr 112 (135)
T PF01488_consen 104 LVIDLAVPR 112 (135)
T ss_dssp EEEES-SS-
T ss_pred ceeccccCC
Confidence 999999644
No 59
>PLN02928 oxidoreductase family protein
Probab=92.65 E-value=0.14 Score=54.39 Aligned_cols=61 Identities=16% Similarity=0.213 Sum_probs=48.2
Q ss_pred CchHHHHHHHhCCCe-eecCCC--------------------------CCHHHHhhhCCEEEEeccC----CCceecCcc
Q psy7978 1 MWSSLQTFWLWVLAN-PSMSKT--------------------------KNIQDVVKSADILVVGIGQ----PEYVKGDWI 49 (542)
Q Consensus 1 vgkPLa~LL~~~~AT-icHs~T--------------------------~nl~~~~k~ADIVIsAvG~----p~lI~~d~i 49 (542)
||+.+|.+|..-|+. +++.++ .+|.+.+++||||+.++.. .++|+.+.+
T Consensus 170 IG~~vA~~l~afG~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ell~~aDiVvl~lPlt~~T~~li~~~~l 249 (347)
T PLN02928 170 IGIELAKRLRPFGVKLLATRRSWTSEPEDGLLIPNGDVDDLVDEKGGHEDIYEFAGEADIVVLCCTLTKETAGIVNDEFL 249 (347)
T ss_pred HHHHHHHHHhhCCCEEEEECCCCChhhhhhhccccccccccccccCcccCHHHHHhhCCEEEECCCCChHhhcccCHHHH
Confidence 589999999988988 444322 2678999999999999874 568887655
Q ss_pred ---cCCeEEEecccc
Q psy7978 50 ---KPGAVVIDCGIN 61 (542)
Q Consensus 50 ---k~GavVIDVGin 61 (542)
|+|+++|++|=-
T Consensus 250 ~~Mk~ga~lINvaRG 264 (347)
T PLN02928 250 SSMKKGALLVNIARG 264 (347)
T ss_pred hcCCCCeEEEECCCc
Confidence 899999999843
No 60
>PRK06823 ornithine cyclodeaminase; Validated
Probab=92.63 E-value=0.1 Score=54.73 Aligned_cols=41 Identities=22% Similarity=0.426 Sum_probs=36.9
Q ss_pred CCHHHHhhhCCEEEEeccCCC-ceecCcccCCeEEEeccccc
Q psy7978 22 KNIQDVVKSADILVVGIGQPE-YVKGDWIKPGAVVIDCGINS 62 (542)
Q Consensus 22 ~nl~~~~k~ADIVIsAvG~p~-lI~~d~ik~GavVIDVGin~ 62 (542)
.+.++.++.||||++|++... +|+.+|+|+|+.|+-||.+.
T Consensus 184 ~~~~~av~~ADIV~taT~s~~P~~~~~~l~~G~hi~~iGs~~ 225 (315)
T PRK06823 184 LDAAEVAHAANLIVTTTPSREPLLQAEDIQPGTHITAVGADS 225 (315)
T ss_pred CCHHHHhcCCCEEEEecCCCCceeCHHHcCCCcEEEecCCCC
Confidence 468899999999999998877 68999999999999999765
No 61
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=92.15 E-value=0.62 Score=44.53 Aligned_cols=39 Identities=23% Similarity=0.121 Sum_probs=29.2
Q ss_pred HHHhhhCCEEEEeccCCC--ceecC-cccCCeEEEecccccc
Q psy7978 25 QDVVKSADILVVGIGQPE--YVKGD-WIKPGAVVIDCGINSV 63 (542)
Q Consensus 25 ~~~~k~ADIVIsAvG~p~--lI~~d-~ik~GavVIDVGin~~ 63 (542)
.+.++++|+||+|+..+. .+..+ ..+++.+|+|+..++.
T Consensus 92 ~~~~~~~diVi~at~~g~~~~~~~~~~~~~~~vv~D~~~~~~ 133 (194)
T cd01078 92 AAAIKGADVVFAAGAAGVELLEKLAWAPKPLAVAADVNAVPP 133 (194)
T ss_pred HHHHhcCCEEEECCCCCceechhhhcccCceeEEEEccCCCC
Confidence 466788999999998887 33333 3456899999987763
No 62
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=92.04 E-value=0.14 Score=53.30 Aligned_cols=41 Identities=15% Similarity=0.137 Sum_probs=37.1
Q ss_pred CCHHHHhhhCCEEEEeccCCC-ceecCcccCCeEEEeccccc
Q psy7978 22 KNIQDVVKSADILVVGIGQPE-YVKGDWIKPGAVVIDCGINS 62 (542)
Q Consensus 22 ~nl~~~~k~ADIVIsAvG~p~-lI~~d~ik~GavVIDVGin~ 62 (542)
.+.++.++.|||||+|++... +|+.+|+|||+-|+-||.+.
T Consensus 174 ~~~~eav~~aDIV~taT~s~~P~~~~~~l~pg~hV~aiGs~~ 215 (301)
T PRK06407 174 DNAEAALRDADTITSITNSDTPIFNRKYLGDEYHVNLAGSNY 215 (301)
T ss_pred CCHHHHHhcCCEEEEecCCCCcEecHHHcCCCceEEecCCCC
Confidence 468899999999999999887 58999999999999999875
No 63
>PRK07589 ornithine cyclodeaminase; Validated
Probab=91.84 E-value=0.15 Score=54.33 Aligned_cols=41 Identities=20% Similarity=0.409 Sum_probs=36.4
Q ss_pred CCHHHHhhhCCEEEEeccCC---CceecCcccCCeEEEeccccc
Q psy7978 22 KNIQDVVKSADILVVGIGQP---EYVKGDWIKPGAVVIDCGINS 62 (542)
Q Consensus 22 ~nl~~~~k~ADIVIsAvG~p---~lI~~d~ik~GavVIDVGin~ 62 (542)
.++++.+++|||||+|+..+ -+++.+|+|+|+-|+-||.+.
T Consensus 185 ~~~~~av~~ADIIvtaT~S~~~~Pvl~~~~lkpG~hV~aIGs~~ 228 (346)
T PRK07589 185 RSVAEAVEGADIITTVTADKTNATILTDDMVEPGMHINAVGGDC 228 (346)
T ss_pred CCHHHHHhcCCEEEEecCCCCCCceecHHHcCCCcEEEecCCCC
Confidence 46889999999999999865 469999999999999999765
No 64
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=91.50 E-value=0.16 Score=53.06 Aligned_cols=41 Identities=22% Similarity=0.501 Sum_probs=36.2
Q ss_pred CCHHHHhhhCCEEEEeccCCC-ceecCcccCCeEEEeccccc
Q psy7978 22 KNIQDVVKSADILVVGIGQPE-YVKGDWIKPGAVVIDCGINS 62 (542)
Q Consensus 22 ~nl~~~~k~ADIVIsAvG~p~-lI~~d~ik~GavVIDVGin~ 62 (542)
.++++.+++|||||+|++.+. +|+.+|+|+|+.|..||...
T Consensus 186 ~~~~~av~~aDiVvtaT~s~~p~i~~~~l~~g~~i~~vg~~~ 227 (326)
T TIGR02992 186 TDPRAAMSGADIIVTTTPSETPILHAEWLEPGQHVTAMGSDA 227 (326)
T ss_pred CCHHHHhccCCEEEEecCCCCcEecHHHcCCCcEEEeeCCCC
Confidence 467888999999999999877 47899999999999999764
No 65
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=91.10 E-value=0.21 Score=54.39 Aligned_cols=62 Identities=18% Similarity=0.249 Sum_probs=49.4
Q ss_pred CchHHHHHHHhCCCe--eecCC-------------CCCHHHHhhhCCEEEEeccCCCceec---CcccCCeEEEeccccc
Q psy7978 1 MWSSLQTFWLWVLAN--PSMSK-------------TKNIQDVVKSADILVVGIGQPEYVKG---DWIKPGAVVIDCGINS 62 (542)
Q Consensus 1 vgkPLa~LL~~~~AT--icHs~-------------T~nl~~~~k~ADIVIsAvG~p~lI~~---d~ik~GavVIDVGin~ 62 (542)
+|+-+++.|...||. ++... ..++.+.++.+|+||+++|.+++|+. ...|+|++++.+|-..
T Consensus 206 IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~~G~~v~~leeal~~aDVVItaTG~~~vI~~~~~~~mK~GailiN~G~~~ 285 (406)
T TIGR00936 206 CGKGIAMRARGMGARVIVTEVDPIRALEAAMDGFRVMTMEEAAKIGDIFITATGNKDVIRGEHFENMKDGAIVANIGHFD 285 (406)
T ss_pred HHHHHHHHHhhCcCEEEEEeCChhhHHHHHhcCCEeCCHHHHHhcCCEEEECCCCHHHHHHHHHhcCCCCcEEEEECCCC
Confidence 578889999888988 33211 12467788999999999999999988 5569999999999753
No 66
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=90.92 E-value=1.1 Score=50.24 Aligned_cols=63 Identities=11% Similarity=0.221 Sum_probs=48.3
Q ss_pred CchHHHHHHHhCCCe-eecCC--------------CCCHHHHhhhCCEEEEeccCC----CceecC---cccCCeEEEec
Q psy7978 1 MWSSLQTFWLWVLAN-PSMSK--------------TKNIQDVVKSADILVVGIGQP----EYVKGD---WIKPGAVVIDC 58 (542)
Q Consensus 1 vgkPLa~LL~~~~AT-icHs~--------------T~nl~~~~k~ADIVIsAvG~p----~lI~~d---~ik~GavVIDV 58 (542)
||+.+|.+|..-|+. +++.. ..++.+.+++||+|+.++... ++|+.+ ..|+|+++||+
T Consensus 149 IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~ 228 (525)
T TIGR01327 149 IGSIVAKRAKAFGMKVLAYDPYISPERAEQLGVELVDDLDELLARADFITVHTPLTPETRGLIGAEELAKMKKGVIIVNC 228 (525)
T ss_pred HHHHHHHHHHhCCCEEEEECCCCChhHHHhcCCEEcCCHHHHHhhCCEEEEccCCChhhccCcCHHHHhcCCCCeEEEEc
Confidence 589999999988888 44332 136899999999999999854 466544 34899999999
Q ss_pred ccccc
Q psy7978 59 GINSV 63 (542)
Q Consensus 59 Gin~~ 63 (542)
|--.+
T Consensus 229 aRG~~ 233 (525)
T TIGR01327 229 ARGGI 233 (525)
T ss_pred CCCce
Confidence 96544
No 67
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=90.87 E-value=0.21 Score=52.41 Aligned_cols=41 Identities=27% Similarity=0.518 Sum_probs=36.2
Q ss_pred CCHHHHhhhCCEEEEeccCCC-ceecCcccCCeEEEeccccc
Q psy7978 22 KNIQDVVKSADILVVGIGQPE-YVKGDWIKPGAVVIDCGINS 62 (542)
Q Consensus 22 ~nl~~~~k~ADIVIsAvG~p~-lI~~d~ik~GavVIDVGin~ 62 (542)
.+.++.+++|||||+|+.... +++.+|+|+|+.|.-||.+.
T Consensus 184 ~~~~eav~~aDiVitaT~s~~P~~~~~~l~~g~~v~~vGs~~ 225 (325)
T TIGR02371 184 TDPREAVEGCDILVTTTPSRKPVVKADWVSEGTHINAIGADA 225 (325)
T ss_pred CCHHHHhccCCEEEEecCCCCcEecHHHcCCCCEEEecCCCC
Confidence 467889999999999997766 68999999999999999764
No 68
>PRK06436 glycerate dehydrogenase; Provisional
Probab=90.70 E-value=0.33 Score=50.70 Aligned_cols=63 Identities=11% Similarity=0.213 Sum_probs=49.3
Q ss_pred CchHHHHHHHhCCCe-eecCCC----------CCHHHHhhhCCEEEEeccC----CCceecC---cccCCeEEEeccccc
Q psy7978 1 MWSSLQTFWLWVLAN-PSMSKT----------KNIQDVVKSADILVVGIGQ----PEYVKGD---WIKPGAVVIDCGINS 62 (542)
Q Consensus 1 vgkPLa~LL~~~~AT-icHs~T----------~nl~~~~k~ADIVIsAvG~----p~lI~~d---~ik~GavVIDVGin~ 62 (542)
||+++|.+|..-|++ +++.++ .++++.+++||+|+..+.. -++|..+ ..|+|+++|++|--.
T Consensus 133 IG~~vA~~l~afG~~V~~~~r~~~~~~~~~~~~~l~ell~~aDiv~~~lp~t~~T~~li~~~~l~~mk~ga~lIN~sRG~ 212 (303)
T PRK06436 133 IGRRVALLAKAFGMNIYAYTRSYVNDGISSIYMEPEDIMKKSDFVLISLPLTDETRGMINSKMLSLFRKGLAIINVARAD 212 (303)
T ss_pred HHHHHHHHHHHCCCEEEEECCCCcccCcccccCCHHHHHhhCCEEEECCCCCchhhcCcCHHHHhcCCCCeEEEECCCcc
Confidence 689999999888988 444432 3689999999999999985 4477754 458999999999765
Q ss_pred c
Q psy7978 63 V 63 (542)
Q Consensus 63 ~ 63 (542)
+
T Consensus 213 ~ 213 (303)
T PRK06436 213 V 213 (303)
T ss_pred c
Confidence 4
No 69
>COG5322 Predicted dehydrogenase [General function prediction only]
Probab=90.54 E-value=0.52 Score=49.32 Aligned_cols=37 Identities=16% Similarity=0.258 Sum_probs=30.3
Q ss_pred HHhhhCCEEEEeccCCC-ceecCcccCCeEEEeccccc
Q psy7978 26 DVVKSADILVVGIGQPE-YVKGDWIKPGAVVIDCGINS 62 (542)
Q Consensus 26 ~~~k~ADIVIsAvG~p~-lI~~d~ik~GavVIDVGin~ 62 (542)
+++..+++|.+|+-.++ .|.+.++|||++|||-|--.
T Consensus 227 ~~~~e~i~v~vAs~~~g~~I~pq~lkpg~~ivD~g~P~ 264 (351)
T COG5322 227 ALPQEDILVWVASMPKGVEIFPQHLKPGCLIVDGGYPK 264 (351)
T ss_pred cccccceEEEEeecCCCceechhhccCCeEEEcCCcCc
Confidence 45667777778887777 59999999999999998654
No 70
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=89.89 E-value=0.42 Score=45.54 Aligned_cols=61 Identities=13% Similarity=0.276 Sum_probs=45.7
Q ss_pred CchHHHHHHHhCCCe-eecCCC--------------CCHHHHhhhCCEEEEeccC----CCceecCcc---cCCeEEEec
Q psy7978 1 MWSSLQTFWLWVLAN-PSMSKT--------------KNIQDVVKSADILVVGIGQ----PEYVKGDWI---KPGAVVIDC 58 (542)
Q Consensus 1 vgkPLa~LL~~~~AT-icHs~T--------------~nl~~~~k~ADIVIsAvG~----p~lI~~d~i---k~GavVIDV 58 (542)
||+-+|.+|..-|++ +.+..+ .++.+.+++||||+..+.- -++|+.+.+ |+|+++|++
T Consensus 47 IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~~~~~~~~l~ell~~aDiv~~~~plt~~T~~li~~~~l~~mk~ga~lvN~ 126 (178)
T PF02826_consen 47 IGRAVARRLKAFGMRVIGYDRSPKPEEGADEFGVEYVSLDELLAQADIVSLHLPLTPETRGLINAEFLAKMKPGAVLVNV 126 (178)
T ss_dssp HHHHHHHHHHHTT-EEEEEESSCHHHHHHHHTTEEESSHHHHHHH-SEEEE-SSSSTTTTTSBSHHHHHTSTTTEEEEES
T ss_pred CcCeEeeeeecCCceeEEecccCChhhhcccccceeeehhhhcchhhhhhhhhccccccceeeeeeeeeccccceEEEec
Confidence 578889999988988 433332 3688999999999999984 478888766 899999998
Q ss_pred ccc
Q psy7978 59 GIN 61 (542)
Q Consensus 59 Gin 61 (542)
|=-
T Consensus 127 aRG 129 (178)
T PF02826_consen 127 ARG 129 (178)
T ss_dssp SSG
T ss_pred cch
Confidence 843
No 71
>PRK13243 glyoxylate reductase; Reviewed
Probab=89.88 E-value=0.42 Score=50.35 Aligned_cols=63 Identities=11% Similarity=0.211 Sum_probs=49.1
Q ss_pred CchHHHHHHHhCCCe-eecCCC-------------CCHHHHhhhCCEEEEeccCC----Cceec---CcccCCeEEEecc
Q psy7978 1 MWSSLQTFWLWVLAN-PSMSKT-------------KNIQDVVKSADILVVGIGQP----EYVKG---DWIKPGAVVIDCG 59 (542)
Q Consensus 1 vgkPLa~LL~~~~AT-icHs~T-------------~nl~~~~k~ADIVIsAvG~p----~lI~~---d~ik~GavVIDVG 59 (542)
||+.+|.+|...|++ +.+..+ .++.+.+++||+|+.++... ++|.. +..|+|+++||+|
T Consensus 161 IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lP~t~~T~~~i~~~~~~~mk~ga~lIN~a 240 (333)
T PRK13243 161 IGQAVARRAKGFGMRILYYSRTRKPEAEKELGAEYRPLEELLRESDFVSLHVPLTKETYHMINEERLKLMKPTAILVNTA 240 (333)
T ss_pred HHHHHHHHHHHCCCEEEEECCCCChhhHHHcCCEecCHHHHHhhCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEECc
Confidence 589999999999988 433322 25788999999999999863 47765 4558999999999
Q ss_pred cccc
Q psy7978 60 INSV 63 (542)
Q Consensus 60 in~~ 63 (542)
--.+
T Consensus 241 Rg~~ 244 (333)
T PRK13243 241 RGKV 244 (333)
T ss_pred Cchh
Confidence 7654
No 72
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=89.83 E-value=0.34 Score=50.70 Aligned_cols=62 Identities=8% Similarity=0.073 Sum_probs=47.4
Q ss_pred CchHHHHHHHhCCCe-eecCCC-------------CCHHHHhhhCCEEEEeccCC----CceecC---cccCCeEEEecc
Q psy7978 1 MWSSLQTFWLWVLAN-PSMSKT-------------KNIQDVVKSADILVVGIGQP----EYVKGD---WIKPGAVVIDCG 59 (542)
Q Consensus 1 vgkPLa~LL~~~~AT-icHs~T-------------~nl~~~~k~ADIVIsAvG~p----~lI~~d---~ik~GavVIDVG 59 (542)
||++++.+|..-|+. +++.++ .++.+.+++||+|+.++... ++|+.+ ..|+|+++|++|
T Consensus 147 IG~~vA~~l~afG~~V~~~~~~~~~~~~~~~~~~~~~l~e~l~~aDvvv~~lPlt~~T~~li~~~~l~~mk~ga~lIN~a 226 (312)
T PRK15469 147 LGSKVAQSLQTWGFPLRCWSRSRKSWPGVQSFAGREELSAFLSQTRVLINLLPNTPETVGIINQQLLEQLPDGAYLLNLA 226 (312)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCCCCCCceeecccccHHHHHhcCCEEEECCCCCHHHHHHhHHHHHhcCCCCcEEEECC
Confidence 689999999988887 443322 25888999999999998854 356543 458999999999
Q ss_pred ccc
Q psy7978 60 INS 62 (542)
Q Consensus 60 in~ 62 (542)
=-.
T Consensus 227 RG~ 229 (312)
T PRK15469 227 RGV 229 (312)
T ss_pred Ccc
Confidence 543
No 73
>PRK07574 formate dehydrogenase; Provisional
Probab=89.52 E-value=1.4 Score=47.74 Aligned_cols=120 Identities=15% Similarity=0.165 Sum_probs=73.4
Q ss_pred CchHHHHHHHhCCCe-eecCCC---------------CCHHHHhhhCCEEEEeccCC----CceecCc---ccCCeEEEe
Q psy7978 1 MWSSLQTFWLWVLAN-PSMSKT---------------KNIQDVVKSADILVVGIGQP----EYVKGDW---IKPGAVVID 57 (542)
Q Consensus 1 vgkPLa~LL~~~~AT-icHs~T---------------~nl~~~~k~ADIVIsAvG~p----~lI~~d~---ik~GavVID 57 (542)
||+.++.+|..-|++ +++.++ .++++.+++||+|+..+.-. ++|+.+. .|+|+++|+
T Consensus 203 IG~~vA~~l~~fG~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN 282 (385)
T PRK07574 203 IGLAVLRRLKPFDVKLHYTDRHRLPEEVEQELGLTYHVSFDSLVSVCDVVTIHCPLHPETEHLFDADVLSRMKRGSYLVN 282 (385)
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCchhhHhhcCceecCCHHHHhhcCCEEEEcCCCCHHHHHHhCHHHHhcCCCCcEEEE
Confidence 689999999988888 443322 36889999999999999843 4666543 599999999
Q ss_pred ccccccCCCcc-----CCCC--eeeecccccc-c-cc------cceEeecCCCCcchhhHHHHHHhHHHHHHHHHhhh
Q psy7978 58 CGINSVPDASK-----ASGQ--KLVGDVQYAE-A-KN------VASWITPVPGGVGPMTVAMLMNNTVLSAERYIDRL 120 (542)
Q Consensus 58 VGin~~~d~~~-----~~~~--kl~GDVdf~~-v-~~------~a~~iTPVPGGVGpmTvamL~~N~v~aa~~~~~~~ 120 (542)
+|--.+-|... ++|. ....||=+.+ . .+ --..+||=-+|.-.=+..-+.+.+++..++.+..+
T Consensus 283 ~aRG~iVDe~AL~~AL~sG~i~GAaLDV~~~EPlp~d~pL~~~pNvilTPHiag~T~e~~~~~~~~~~~ni~~~~~G~ 360 (385)
T PRK07574 283 TARGKIVDRDAVVRALESGHLAGYAGDVWFPQPAPADHPWRTMPRNGMTPHISGTTLSAQARYAAGTREILECFFEGR 360 (385)
T ss_pred CCCCchhhHHHHHHHHHhCCccEEEEecCCCCCCCCCChHHhCCCeEECCccccCcHHHHHHHHHHHHHHHHHHHcCC
Confidence 98654322110 1110 2457883321 1 01 13468998777554444444444444444444443
No 74
>PRK08605 D-lactate dehydrogenase; Validated
Probab=89.42 E-value=0.56 Score=49.34 Aligned_cols=63 Identities=17% Similarity=0.308 Sum_probs=47.2
Q ss_pred CchHHHHHHH-hCCCe-eecCC------------CCCHHHHhhhCCEEEEeccCC----Cceec---CcccCCeEEEecc
Q psy7978 1 MWSSLQTFWL-WVLAN-PSMSK------------TKNIQDVVKSADILVVGIGQP----EYVKG---DWIKPGAVVIDCG 59 (542)
Q Consensus 1 vgkPLa~LL~-~~~AT-icHs~------------T~nl~~~~k~ADIVIsAvG~p----~lI~~---d~ik~GavVIDVG 59 (542)
||+.+|.+|. ..|++ +.+.. +.++.+.+++||+||.++... ++++. +++|+|+++||++
T Consensus 157 IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~l~ell~~aDvIvl~lP~t~~t~~li~~~~l~~mk~gailIN~s 236 (332)
T PRK08605 157 IGLAVAKIFAKGYGSDVVAYDPFPNAKAATYVDYKDTIEEAVEGADIVTLHMPATKYNHYLFNADLFKHFKKGAVFVNCA 236 (332)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCccHhHHhhccccCCHHHHHHhCCEEEEeCCCCcchhhhcCHHHHhcCCCCcEEEECC
Confidence 5889999984 45777 44432 247899999999999998864 45653 5679999999999
Q ss_pred cccc
Q psy7978 60 INSV 63 (542)
Q Consensus 60 in~~ 63 (542)
--..
T Consensus 237 RG~~ 240 (332)
T PRK08605 237 RGSL 240 (332)
T ss_pred CCcc
Confidence 7544
No 75
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=89.27 E-value=0.36 Score=50.89 Aligned_cols=62 Identities=13% Similarity=0.282 Sum_probs=47.6
Q ss_pred CchHHHHHHHhCCCe-eecCC-----------CCCHHHHhhhCCEEEEeccCC----CceecC---cccCCeEEEecccc
Q psy7978 1 MWSSLQTFWLWVLAN-PSMSK-----------TKNIQDVVKSADILVVGIGQP----EYVKGD---WIKPGAVVIDCGIN 61 (542)
Q Consensus 1 vgkPLa~LL~~~~AT-icHs~-----------T~nl~~~~k~ADIVIsAvG~p----~lI~~d---~ik~GavVIDVGin 61 (542)
||+++|.+|...|.+ +++.. +.++.+.+++||+|+.++... +++..+ .+|+|+++|++|=-
T Consensus 157 IG~~vA~~L~~~G~~V~~~d~~~~~~~~~~~~~~~l~ell~~aDiVil~lP~t~~t~~li~~~~l~~mk~gavlIN~aRG 236 (330)
T PRK12480 157 IGAATAKIYAGFGATITAYDAYPNKDLDFLTYKDSVKEAIKDADIISLHVPANKESYHLFDKAMFDHVKKGAILVNAARG 236 (330)
T ss_pred HHHHHHHHHHhCCCEEEEEeCChhHhhhhhhccCCHHHHHhcCCEEEEeCCCcHHHHHHHhHHHHhcCCCCcEEEEcCCc
Confidence 589999999998888 33322 237889999999999999876 355543 35899999999854
Q ss_pred c
Q psy7978 62 S 62 (542)
Q Consensus 62 ~ 62 (542)
.
T Consensus 237 ~ 237 (330)
T PRK12480 237 A 237 (330)
T ss_pred c
Confidence 3
No 76
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=88.94 E-value=0.48 Score=44.34 Aligned_cols=62 Identities=15% Similarity=0.208 Sum_probs=44.1
Q ss_pred CchHHHHHHHhCCCe-eecCCC---------------CCHHHHhhhCCEEEEeccCCCc-----ee---cCcccCCeEEE
Q psy7978 1 MWSSLQTFWLWVLAN-PSMSKT---------------KNIQDVVKSADILVVGIGQPEY-----VK---GDWIKPGAVVI 56 (542)
Q Consensus 1 vgkPLa~LL~~~~AT-icHs~T---------------~nl~~~~k~ADIVIsAvG~p~l-----I~---~d~ik~GavVI 56 (542)
||.|++.-|.+.|.+ ..+-++ .++++.++++|+||+++..+.- .. ...+++|.++|
T Consensus 12 mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~g~~~~~s~~e~~~~~dvvi~~v~~~~~v~~v~~~~~i~~~l~~g~iii 91 (163)
T PF03446_consen 12 MGSAMARNLAKAGYEVTVYDRSPEKAEALAEAGAEVADSPAEAAEQADVVILCVPDDDAVEAVLFGENILAGLRPGKIII 91 (163)
T ss_dssp HHHHHHHHHHHTTTEEEEEESSHHHHHHHHHTTEEEESSHHHHHHHBSEEEE-SSSHHHHHHHHHCTTHGGGS-TTEEEE
T ss_pred HHHHHHHHHHhcCCeEEeeccchhhhhhhHHhhhhhhhhhhhHhhcccceEeecccchhhhhhhhhhHHhhccccceEEE
Confidence 589999999999888 333333 3688999999999999988552 22 35668999999
Q ss_pred eccccc
Q psy7978 57 DCGINS 62 (542)
Q Consensus 57 DVGin~ 62 (542)
|.++..
T Consensus 92 d~sT~~ 97 (163)
T PF03446_consen 92 DMSTIS 97 (163)
T ss_dssp E-SS--
T ss_pred ecCCcc
Confidence 999875
No 77
>PRK08618 ornithine cyclodeaminase; Validated
Probab=88.25 E-value=0.44 Score=49.80 Aligned_cols=40 Identities=18% Similarity=0.241 Sum_probs=35.7
Q ss_pred CCHHHHhhhCCEEEEeccCCCc-eecCcccCCeEEEeccccc
Q psy7978 22 KNIQDVVKSADILVVGIGQPEY-VKGDWIKPGAVVIDCGINS 62 (542)
Q Consensus 22 ~nl~~~~k~ADIVIsAvG~p~l-I~~d~ik~GavVIDVGin~ 62 (542)
.++++.+++|||||+|++.++- ++ +|+|+|+.|+-||.+.
T Consensus 184 ~~~~~~~~~aDiVi~aT~s~~p~i~-~~l~~G~hV~~iGs~~ 224 (325)
T PRK08618 184 NSADEAIEEADIIVTVTNAKTPVFS-EKLKKGVHINAVGSFM 224 (325)
T ss_pred CCHHHHHhcCCEEEEccCCCCcchH-HhcCCCcEEEecCCCC
Confidence 3678889999999999999885 78 9999999999999864
No 78
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=87.96 E-value=0.8 Score=49.97 Aligned_cols=62 Identities=21% Similarity=0.280 Sum_probs=43.9
Q ss_pred chHHHHHHHhCCCe--eecCCC-------------------CCHHHHhhhCCEEEEeccCCCc-eecCcccC-CeEEEec
Q psy7978 2 WSSLQTFWLWVLAN--PSMSKT-------------------KNIQDVVKSADILVVGIGQPEY-VKGDWIKP-GAVVIDC 58 (542)
Q Consensus 2 gkPLa~LL~~~~AT--icHs~T-------------------~nl~~~~k~ADIVIsAvG~p~l-I~~d~ik~-GavVIDV 58 (542)
|+-++.-|..+|+. .+.++| .++.+.+.+|||||+|+|.|++ |+.++++. ..++||.
T Consensus 193 a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~~~~~~~~~~~~l~~~l~~aDiVI~aT~a~~~vi~~~~~~~~~~~~iDL 272 (414)
T PRK13940 193 GELLFRHVTALAPKQIMLANRTIEKAQKITSAFRNASAHYLSELPQLIKKADIIIAAVNVLEYIVTCKYVGDKPRVFIDI 272 (414)
T ss_pred HHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHhcCCeEecHHHHHHHhccCCEEEECcCCCCeeECHHHhCCCCeEEEEe
Confidence 45566677777765 222232 1346678899999999999997 67777752 3589999
Q ss_pred ccccc
Q psy7978 59 GINSV 63 (542)
Q Consensus 59 Gin~~ 63 (542)
+.-+.
T Consensus 273 avPRd 277 (414)
T PRK13940 273 SIPQA 277 (414)
T ss_pred CCCCC
Confidence 98763
No 79
>PRK06932 glycerate dehydrogenase; Provisional
Probab=87.71 E-value=0.63 Score=48.69 Aligned_cols=62 Identities=16% Similarity=0.220 Sum_probs=48.9
Q ss_pred CchHHHHHHHhCCCe-eecCCCC---------CHHHHhhhCCEEEEeccC----CCceecCcc---cCCeEEEeccccc
Q psy7978 1 MWSSLQTFWLWVLAN-PSMSKTK---------NIQDVVKSADILVVGIGQ----PEYVKGDWI---KPGAVVIDCGINS 62 (542)
Q Consensus 1 vgkPLa~LL~~~~AT-icHs~T~---------nl~~~~k~ADIVIsAvG~----p~lI~~d~i---k~GavVIDVGin~ 62 (542)
||+=+|.+|..-|++ ++++++. +|.+.+++||||+.++.. -++|+.+.+ |+|+++|++|=-.
T Consensus 158 IG~~va~~l~~fg~~V~~~~~~~~~~~~~~~~~l~ell~~sDiv~l~~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~ 236 (314)
T PRK06932 158 LGTEVGRLAQALGMKVLYAEHKGASVCREGYTPFEEVLKQADIVTLHCPLTETTQNLINAETLALMKPTAFLINTGRGP 236 (314)
T ss_pred HHHHHHHHHhcCCCEEEEECCCcccccccccCCHHHHHHhCCEEEEcCCCChHHhcccCHHHHHhCCCCeEEEECCCcc
Confidence 577888888888998 5655432 588999999999999873 458887655 8999999998543
No 80
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=86.34 E-value=1.3 Score=45.28 Aligned_cols=62 Identities=15% Similarity=0.091 Sum_probs=45.6
Q ss_pred CchHHHHHHHhCCCe--eecC--------------CCCCHHHHhhhCCEEEEeccCCCcee---------cCcccCCeEE
Q psy7978 1 MWSSLQTFWLWVLAN--PSMS--------------KTKNIQDVVKSADILVVGIGQPEYVK---------GDWIKPGAVV 55 (542)
Q Consensus 1 vgkPLa~LL~~~~AT--icHs--------------~T~nl~~~~k~ADIVIsAvG~p~lI~---------~d~ik~GavV 55 (542)
||.||+.-|.+.|.. ++.. .+.++.+.++++|+||+++..+.-+. ...+++|.+|
T Consensus 7 mG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~~~~~~advVil~vp~~~~~~~v~~g~~~l~~~~~~g~~v 86 (288)
T TIGR01692 7 MGGPMAANLLKAGHPVRVFDLFPDAVEEAVAAGAQAAASPAEAAEGADRVITMLPAGQHVISVYSGDEGILPKVAKGSLL 86 (288)
T ss_pred hHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCcchHhhcCCCCCEE
Confidence 689999999988766 3322 13467888999999999999855322 1346789999
Q ss_pred Eeccccc
Q psy7978 56 IDCGINS 62 (542)
Q Consensus 56 IDVGin~ 62 (542)
||.++..
T Consensus 87 id~st~~ 93 (288)
T TIGR01692 87 IDCSTID 93 (288)
T ss_pred EECCCCC
Confidence 9998654
No 81
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=86.29 E-value=0.95 Score=50.64 Aligned_cols=63 Identities=13% Similarity=0.212 Sum_probs=49.4
Q ss_pred CchHHHHHHHhCCCe-eecCCCC-------------CHHHHhhhCCEEEEeccCC----CceecC---cccCCeEEEecc
Q psy7978 1 MWSSLQTFWLWVLAN-PSMSKTK-------------NIQDVVKSADILVVGIGQP----EYVKGD---WIKPGAVVIDCG 59 (542)
Q Consensus 1 vgkPLa~LL~~~~AT-icHs~T~-------------nl~~~~k~ADIVIsAvG~p----~lI~~d---~ik~GavVIDVG 59 (542)
||+.+|.+|..-|++ +++..+. ++.+.+++||+|+.++... ++|+.+ ..|+|+++||+|
T Consensus 151 IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~g~~~~~l~ell~~aDiV~l~lP~t~~t~~li~~~~l~~mk~ga~lIN~a 230 (526)
T PRK13581 151 IGSEVAKRAKAFGMKVIAYDPYISPERAAQLGVELVSLDELLARADFITLHTPLTPETRGLIGAEELAKMKPGVRIINCA 230 (526)
T ss_pred HHHHHHHHHHhCCCEEEEECCCCChhHHHhcCCEEEcHHHHHhhCCEEEEccCCChHhhcCcCHHHHhcCCCCeEEEECC
Confidence 589999999998998 4443211 5788999999999999975 577654 458999999998
Q ss_pred cccc
Q psy7978 60 INSV 63 (542)
Q Consensus 60 in~~ 63 (542)
--.+
T Consensus 231 RG~~ 234 (526)
T PRK13581 231 RGGI 234 (526)
T ss_pred CCce
Confidence 6543
No 82
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=86.24 E-value=1.2 Score=46.68 Aligned_cols=62 Identities=23% Similarity=0.259 Sum_probs=46.6
Q ss_pred CchHHHHHHHhCCCe-eecCCC----------------CCHHHHhhhCCEEEEeccCCCc-----eec----CcccCCeE
Q psy7978 1 MWSSLQTFWLWVLAN-PSMSKT----------------KNIQDVVKSADILVVGIGQPEY-----VKG----DWIKPGAV 54 (542)
Q Consensus 1 vgkPLa~LL~~~~AT-icHs~T----------------~nl~~~~k~ADIVIsAvG~p~l-----I~~----d~ik~Gav 54 (542)
||.|+|.-|.++|-. ...-+| .+..+.++.|||||+.++-+.- ..+ +..|+|.+
T Consensus 11 MG~pmA~~L~~aG~~v~v~~r~~~ka~~~~~~~Ga~~a~s~~eaa~~aDvVitmv~~~~~V~~V~~g~~g~~~~~~~G~i 90 (286)
T COG2084 11 MGSPMAANLLKAGHEVTVYNRTPEKAAELLAAAGATVAASPAEAAAEADVVITMLPDDAAVRAVLFGENGLLEGLKPGAI 90 (286)
T ss_pred hhHHHHHHHHHCCCEEEEEeCChhhhhHHHHHcCCcccCCHHHHHHhCCEEEEecCCHHHHHHHHhCccchhhcCCCCCE
Confidence 699999999999877 322222 3456889999999999998773 222 33568999
Q ss_pred EEeccccc
Q psy7978 55 VIDCGINS 62 (542)
Q Consensus 55 VIDVGin~ 62 (542)
+||..+..
T Consensus 91 ~IDmSTis 98 (286)
T COG2084 91 VIDMSTIS 98 (286)
T ss_pred EEECCCCC
Confidence 99999874
No 83
>PRK08291 ectoine utilization protein EutC; Validated
Probab=86.12 E-value=0.65 Score=48.70 Aligned_cols=41 Identities=29% Similarity=0.639 Sum_probs=36.0
Q ss_pred CCHHHHhhhCCEEEEeccCCC-ceecCcccCCeEEEeccccc
Q psy7978 22 KNIQDVVKSADILVVGIGQPE-YVKGDWIKPGAVVIDCGINS 62 (542)
Q Consensus 22 ~nl~~~~k~ADIVIsAvG~p~-lI~~d~ik~GavVIDVGin~ 62 (542)
.++++.+++|||||+|+.... +|+.+|+++|+.|+.+|.+.
T Consensus 189 ~d~~~al~~aDiVi~aT~s~~p~i~~~~l~~g~~v~~vg~d~ 230 (330)
T PRK08291 189 RDVHEAVAGADIIVTTTPSEEPILKAEWLHPGLHVTAMGSDA 230 (330)
T ss_pred CCHHHHHccCCEEEEeeCCCCcEecHHHcCCCceEEeeCCCC
Confidence 467888999999999998876 58899999999999999764
No 84
>PRK06199 ornithine cyclodeaminase; Validated
Probab=86.03 E-value=0.56 Score=50.55 Aligned_cols=42 Identities=31% Similarity=0.607 Sum_probs=35.6
Q ss_pred CCHHHHhhhCCEEEEeccCC-------CceecCcccCCeEEEecccccc
Q psy7978 22 KNIQDVVKSADILVVGIGQP-------EYVKGDWIKPGAVVIDCGINSV 63 (542)
Q Consensus 22 ~nl~~~~k~ADIVIsAvG~p-------~lI~~d~ik~GavVIDVGin~~ 63 (542)
.+.++.++.|||||+|+... -+|+.+|+|+|+.|+=+|.+..
T Consensus 215 ~s~~eav~~ADIVvtaT~s~~~~~s~~Pv~~~~~lkpG~hv~~ig~~el 263 (379)
T PRK06199 215 DSIEEVVRGSDIVTYCNSGETGDPSTYPYVKREWVKPGAFLLMPAACRI 263 (379)
T ss_pred CCHHHHHcCCCEEEEccCCCCCCCCcCcEecHHHcCCCcEEecCCcccC
Confidence 56889999999999999642 5789999999999988887654
No 85
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=85.93 E-value=1 Score=47.12 Aligned_cols=62 Identities=16% Similarity=0.219 Sum_probs=48.8
Q ss_pred CchHHHHHHHhCCCe-eecCCC----------CCHHHHhhhCCEEEEeccCC----CceecCcc---cCCeEEEeccccc
Q psy7978 1 MWSSLQTFWLWVLAN-PSMSKT----------KNIQDVVKSADILVVGIGQP----EYVKGDWI---KPGAVVIDCGINS 62 (542)
Q Consensus 1 vgkPLa~LL~~~~AT-icHs~T----------~nl~~~~k~ADIVIsAvG~p----~lI~~d~i---k~GavVIDVGin~ 62 (542)
||+=+|.+|..-|++ +++..+ .+|.+.+++||+|+..+..- ++|+.+.+ |+|+++|++|=-.
T Consensus 156 IG~~vA~~~~~fgm~V~~~d~~~~~~~~~~~~~~l~ell~~sDvv~lh~Plt~~T~~li~~~~~~~Mk~~a~lIN~aRG~ 235 (311)
T PRK08410 156 IGKRVAKIAQAFGAKVVYYSTSGKNKNEEYERVSLEELLKTSDIISIHAPLNEKTKNLIAYKELKLLKDGAILINVGRGG 235 (311)
T ss_pred HHHHHHHHHhhcCCEEEEECCCccccccCceeecHHHHhhcCCEEEEeCCCCchhhcccCHHHHHhCCCCeEEEECCCcc
Confidence 577888888888888 555432 16899999999999999743 68887655 8999999998544
No 86
>PRK07340 ornithine cyclodeaminase; Validated
Probab=85.47 E-value=1 Score=46.79 Aligned_cols=41 Identities=15% Similarity=0.225 Sum_probs=35.2
Q ss_pred CCHHHHhhhCCEEEEeccCCCceecCcccCCeEEEeccccc
Q psy7978 22 KNIQDVVKSADILVVGIGQPEYVKGDWIKPGAVVIDCGINS 62 (542)
Q Consensus 22 ~nl~~~~k~ADIVIsAvG~p~lI~~d~ik~GavVIDVGin~ 62 (542)
.++++.+++|||||+|+..+.-+=..|+|||+.|+-||.+.
T Consensus 180 ~~~~~av~~aDiVitaT~s~~Pl~~~~~~~g~hi~~iGs~~ 220 (304)
T PRK07340 180 LDGEAIPEAVDLVVTATTSRTPVYPEAARAGRLVVAVGAFT 220 (304)
T ss_pred CCHHHHhhcCCEEEEccCCCCceeCccCCCCCEEEecCCCC
Confidence 46888999999999999999864334899999999999875
No 87
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=85.46 E-value=1.9 Score=48.57 Aligned_cols=80 Identities=20% Similarity=0.349 Sum_probs=51.7
Q ss_pred HHHHhhhCCEEEEec---cC--CCceecCcc---cCCeEEEeccccccCCCccCCCCeeeeccccc----ccc--c--cc
Q psy7978 24 IQDVVKSADILVVGI---GQ--PEYVKGDWI---KPGAVVIDCGINSVPDASKASGQKLVGDVQYA----EAK--N--VA 87 (542)
Q Consensus 24 l~~~~k~ADIVIsAv---G~--p~lI~~d~i---k~GavVIDVGin~~~d~~~~~~~kl~GDVdf~----~v~--~--~a 87 (542)
+.+.++.+||||.++ |+ |.+++.+|+ |+|++|||+++.. . |++.+. .+. . ..
T Consensus 241 ~~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIVDlA~d~--G----------Gn~E~t~p~~~~~~~~GV~~ 308 (511)
T TIGR00561 241 FAAQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIVDLAAEQ--G----------GNCEYTKPGEVYTTENQVKV 308 (511)
T ss_pred HHHHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEEEeeeCC--C----------CCEEEecCceEEEecCCEEE
Confidence 566788999999999 65 558998887 7999999999853 1 233221 111 0 12
Q ss_pred eEeecCCCCcchhhHHHHHHhHHHHHHH
Q psy7978 88 SWITPVPGGVGPMTVAMLMNNTVLSAER 115 (542)
Q Consensus 88 ~~iTPVPGGVGpmTvamL~~N~v~aa~~ 115 (542)
-.++=.|+-+-+-+.-++-+|++...+.
T Consensus 309 ~gv~nlPs~~p~~AS~l~s~nl~~~l~~ 336 (511)
T TIGR00561 309 IGYTDLPSRLPTQSSQLYGTNLVNLLKL 336 (511)
T ss_pred EeeCCccccCHHHHHHHHHHHHHHHHHH
Confidence 2355667877776665555555544433
No 88
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=85.40 E-value=0.44 Score=50.68 Aligned_cols=85 Identities=26% Similarity=0.406 Sum_probs=52.1
Q ss_pred CCHHHHhhhCCEEEEeccCC-----CceecCcc---cCCeEEEeccccccCCCccCCCCeeee--ccccccccccceEee
Q psy7978 22 KNIQDVVKSADILVVGIGQP-----EYVKGDWI---KPGAVVIDCGINSVPDASKASGQKLVG--DVQYAEAKNVASWIT 91 (542)
Q Consensus 22 ~nl~~~~k~ADIVIsAvG~p-----~lI~~d~i---k~GavVIDVGin~~~d~~~~~~~kl~G--DVdf~~v~~~a~~iT 91 (542)
.|+++.+++||+||.|+=.| .+++.+|+ |||+++|||.|-.- +-=+ ..+..- |=-| ....+.-|-.
T Consensus 223 ~~iee~v~~aDlvIgaVLIpgakaPkLvt~e~vk~MkpGsVivDVAiDqG--Gc~E-t~~~TTh~~PtY-~~~gvvhY~V 298 (371)
T COG0686 223 SNIEEAVKKADLVIGAVLIPGAKAPKLVTREMVKQMKPGSVIVDVAIDQG--GCFE-TSHPTTHDDPTY-EVDGVVHYGV 298 (371)
T ss_pred HHHHHHhhhccEEEEEEEecCCCCceehhHHHHHhcCCCcEEEEEEEcCC--Ccee-ccccccCCCCce-eecCEEEEec
Confidence 37999999999999998554 58998876 79999999988531 0000 000000 0011 1233444545
Q ss_pred cCCCCcchhhHHHHHHhHH
Q psy7978 92 PVPGGVGPMTVAMLMNNTV 110 (542)
Q Consensus 92 PVPGGVGpmTvamL~~N~v 110 (542)
|.-=|-=|-|.++-+.|.-
T Consensus 299 aNmPgaVprTst~AL~nat 317 (371)
T COG0686 299 ANMPGAVPRTSTQALTNAT 317 (371)
T ss_pred CCCCccccchhHHHhhhcc
Confidence 5433455888888777743
No 89
>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]
Probab=85.28 E-value=0.89 Score=48.38 Aligned_cols=42 Identities=29% Similarity=0.614 Sum_probs=37.4
Q ss_pred CCCHHHHhhhCCEEEEeccCCC-ceecCcccCCeEEEeccccc
Q psy7978 21 TKNIQDVVKSADILVVGIGQPE-YVKGDWIKPGAVVIDCGINS 62 (542)
Q Consensus 21 T~nl~~~~k~ADIVIsAvG~p~-lI~~d~ik~GavVIDVGin~ 62 (542)
..+.++.++.|||||+++-... +|+.+|+++|+-|.-+|.+.
T Consensus 186 ~~s~~~av~~aDiIvt~T~s~~Pil~~~~l~~G~hI~aiGad~ 228 (330)
T COG2423 186 ADSAEEAVEGADIVVTATPSTEPVLKAEWLKPGTHINAIGADA 228 (330)
T ss_pred ccCHHHHhhcCCEEEEecCCCCCeecHhhcCCCcEEEecCCCC
Confidence 3578999999999999998766 79999999999999999764
No 90
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=85.27 E-value=0.95 Score=48.43 Aligned_cols=60 Identities=7% Similarity=0.075 Sum_probs=45.3
Q ss_pred CchHHHHHHHhCCCe-eecCC--CCCHHHHhhhCCEEEEeccCCCcee-----cCcccCCeEEEecccc
Q psy7978 1 MWSSLQTFWLWVLAN-PSMSK--TKNIQDVVKSADILVVGIGQPEYVK-----GDWIKPGAVVIDCGIN 61 (542)
Q Consensus 1 vgkPLa~LL~~~~AT-icHs~--T~nl~~~~k~ADIVIsAvG~p~lI~-----~d~ik~GavVIDVGin 61 (542)
||.+++..|.++|-+ .++.. ..+..+.+++||+||.|+....... .. +++|++|+|+|..
T Consensus 110 mG~slA~~l~~~G~~V~~~d~~~~~~~~~~~~~aDlVilavP~~~~~~~~~~l~~-l~~~~iv~Dv~Sv 177 (374)
T PRK11199 110 LGRLFAKMLTLSGYQVRILEQDDWDRAEDILADAGMVIVSVPIHLTEEVIARLPP-LPEDCILVDLTSV 177 (374)
T ss_pred hhHHHHHHHHHCCCeEEEeCCCcchhHHHHHhcCCEEEEeCcHHHHHHHHHHHhC-CCCCcEEEECCCc
Confidence 589999999998876 33322 2367788999999999998776322 12 6899999999875
No 91
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=84.80 E-value=0.78 Score=49.78 Aligned_cols=62 Identities=18% Similarity=0.262 Sum_probs=43.8
Q ss_pred CchHHHHHHHhCCCe--eecCCC------------------CCHHHHhhhCCEEEEeccCCCc-eecCcccC-------C
Q psy7978 1 MWSSLQTFWLWVLAN--PSMSKT------------------KNIQDVVKSADILVVGIGQPEY-VKGDWIKP-------G 52 (542)
Q Consensus 1 vgkPLa~LL~~~~AT--icHs~T------------------~nl~~~~k~ADIVIsAvG~p~l-I~~d~ik~-------G 52 (542)
+|+.++..|...|+. ++..+| .++.+.+..+|+||+|+|.|.. ++.+|+++ .
T Consensus 191 iG~~~a~~L~~~G~~~V~v~~rs~~ra~~la~~~g~~~i~~~~l~~~l~~aDvVi~aT~s~~~ii~~e~l~~~~~~~~~~ 270 (417)
T TIGR01035 191 MGELVAKHLLRKGVGKILIANRTYERAEDLAKELGGEAVKFEDLEEYLAEADIVISSTGAPHPIVSKEDVERALRERTRP 270 (417)
T ss_pred HHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCeEeeHHHHHHHHhhCCEEEECCCCCCceEcHHHHHHHHhcCCCC
Confidence 466777778777744 222222 1355667899999999999884 88898864 3
Q ss_pred eEEEeccccc
Q psy7978 53 AVVIDCGINS 62 (542)
Q Consensus 53 avVIDVGin~ 62 (542)
.++||++.-+
T Consensus 271 ~~viDla~Pr 280 (417)
T TIGR01035 271 LFIIDIAVPR 280 (417)
T ss_pred eEEEEeCCCC
Confidence 5999999544
No 92
>PLN02494 adenosylhomocysteinase
Probab=84.61 E-value=1.3 Score=49.49 Aligned_cols=61 Identities=21% Similarity=0.158 Sum_probs=47.6
Q ss_pred CchHHHHHHHhCCCe-eecCCC--------------CCHHHHhhhCCEEEEeccCCCceec---CcccCCeEEEecccc
Q psy7978 1 MWSSLQTFWLWVLAN-PSMSKT--------------KNIQDVVKSADILVVGIGQPEYVKG---DWIKPGAVVIDCGIN 61 (542)
Q Consensus 1 vgkPLa~LL~~~~AT-icHs~T--------------~nl~~~~k~ADIVIsAvG~p~lI~~---d~ik~GavVIDVGin 61 (542)
||+-++..+...||. +..... -++.+.++.|||||.++|.+++|.. +++|+|+++|.+|..
T Consensus 265 IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~~~G~~vv~leEal~~ADVVI~tTGt~~vI~~e~L~~MK~GAiLiNvGr~ 343 (477)
T PLN02494 265 VGKGCAAAMKAAGARVIVTEIDPICALQALMEGYQVLTLEDVVSEADIFVTTTGNKDIIMVDHMRKMKNNAIVCNIGHF 343 (477)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCchhhHHHHhcCCeeccHHHHHhhCCEEEECCCCccchHHHHHhcCCCCCEEEEcCCC
Confidence 577888888888988 322111 1467888999999999999999854 567999999999983
No 93
>PRK06487 glycerate dehydrogenase; Provisional
Probab=84.42 E-value=1.3 Score=46.40 Aligned_cols=62 Identities=11% Similarity=0.102 Sum_probs=49.1
Q ss_pred CchHHHHHHHhCCCe-eecCCC--------CCHHHHhhhCCEEEEeccC----CCceecCcc---cCCeEEEeccccc
Q psy7978 1 MWSSLQTFWLWVLAN-PSMSKT--------KNIQDVVKSADILVVGIGQ----PEYVKGDWI---KPGAVVIDCGINS 62 (542)
Q Consensus 1 vgkPLa~LL~~~~AT-icHs~T--------~nl~~~~k~ADIVIsAvG~----p~lI~~d~i---k~GavVIDVGin~ 62 (542)
||+=+|.+|..-|+. +++..+ .+|.+.+++||||+..+.- .++|+.+.| |+|+++|++|=-.
T Consensus 159 IG~~vA~~l~~fgm~V~~~~~~~~~~~~~~~~l~ell~~sDiv~l~lPlt~~T~~li~~~~~~~mk~ga~lIN~aRG~ 236 (317)
T PRK06487 159 LGGAVARLAEAFGMRVLIGQLPGRPARPDRLPLDELLPQVDALTLHCPLTEHTRHLIGARELALMKPGALLINTARGG 236 (317)
T ss_pred HHHHHHHHHhhCCCEEEEECCCCCcccccccCHHHHHHhCCEEEECCCCChHHhcCcCHHHHhcCCCCeEEEECCCcc
Confidence 577888888888888 655533 2589999999999999885 468887655 8999999998543
No 94
>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein. This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.
Probab=84.19 E-value=1.4 Score=47.12 Aligned_cols=61 Identities=11% Similarity=-0.019 Sum_probs=47.4
Q ss_pred chHHHHHHHhCCCe--eec-C------------------CCCCHHHHhhhCCEEEEeccCCCcee------cCcccCCeE
Q psy7978 2 WSSLQTFWLWVLAN--PSM-S------------------KTKNIQDVVKSADILVVGIGQPEYVK------GDWIKPGAV 54 (542)
Q Consensus 2 gkPLa~LL~~~~AT--icH-s------------------~T~nl~~~~k~ADIVIsAvG~p~lI~------~d~ik~Gav 54 (542)
|+|||.-|++.|-+ ++. + .+.+..+.++++||||+++..+.-+. .+.+++|++
T Consensus 32 GspMArnLlkAGheV~V~Drnrsa~e~e~~e~LaeaGA~~AaS~aEAAa~ADVVIL~LPd~aaV~eVl~GLaa~L~~GaI 111 (341)
T TIGR01724 32 GSRMAIEFAMAGHDVVLAEPNREFMSDDLWKKVEDAGVKVVSDDKEAAKHGEIHVLFTPFGKGTFSIARTIIEHVPENAV 111 (341)
T ss_pred HHHHHHHHHHCCCEEEEEeCChhhhhhhhhHHHHHCCCeecCCHHHHHhCCCEEEEecCCHHHHHHHHHHHHhcCCCCCE
Confidence 78999999988877 331 1 12368899999999999999887542 345789999
Q ss_pred EEeccccc
Q psy7978 55 VIDCGINS 62 (542)
Q Consensus 55 VIDVGin~ 62 (542)
|||.++..
T Consensus 112 VID~STIs 119 (341)
T TIGR01724 112 ICNTCTVS 119 (341)
T ss_pred EEECCCCC
Confidence 99998864
No 95
>PRK06141 ornithine cyclodeaminase; Validated
Probab=83.35 E-value=1.1 Score=46.67 Aligned_cols=40 Identities=30% Similarity=0.556 Sum_probs=33.1
Q ss_pred CHHHHhhhCCEEEEeccCCCc-eecCcccCCeEEEeccccc
Q psy7978 23 NIQDVVKSADILVVGIGQPEY-VKGDWIKPGAVVIDCGINS 62 (542)
Q Consensus 23 nl~~~~k~ADIVIsAvG~p~l-I~~d~ik~GavVIDVGin~ 62 (542)
++.+.+++|||||+|++.+.- ++.+|+++|+.|.=+|.+.
T Consensus 182 ~~~~av~~aDIVi~aT~s~~pvl~~~~l~~g~~i~~ig~~~ 222 (314)
T PRK06141 182 DLEAAVRQADIISCATLSTEPLVRGEWLKPGTHLDLVGNFT 222 (314)
T ss_pred CHHHHHhcCCEEEEeeCCCCCEecHHHcCCCCEEEeeCCCC
Confidence 467788999999999998875 8899999999666677653
No 96
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=83.26 E-value=1.6 Score=47.24 Aligned_cols=119 Identities=16% Similarity=0.142 Sum_probs=73.5
Q ss_pred CchHHHHHHHhCCCe-eecCC----------CCCHHHHhhhCCEEEEeccC--------CCceecCc---ccCCeEEEec
Q psy7978 1 MWSSLQTFWLWVLAN-PSMSK----------TKNIQDVVKSADILVVGIGQ--------PEYVKGDW---IKPGAVVIDC 58 (542)
Q Consensus 1 vgkPLa~LL~~~~AT-icHs~----------T~nl~~~~k~ADIVIsAvG~--------p~lI~~d~---ik~GavVIDV 58 (542)
||+.++.+|..-|.+ +++.. -.++.+.+++||||+..+.- -++|+.+. +|+|+++|++
T Consensus 127 IG~~va~~l~a~G~~V~~~Dp~~~~~~~~~~~~~l~ell~~aDiV~lh~Plt~~g~~~T~~li~~~~l~~mk~gailIN~ 206 (381)
T PRK00257 127 VGGRLVRVLRGLGWKVLVCDPPRQEAEGDGDFVSLERILEECDVISLHTPLTKEGEHPTRHLLDEAFLASLRPGAWLINA 206 (381)
T ss_pred HHHHHHHHHHHCCCEEEEECCcccccccCccccCHHHHHhhCCEEEEeCcCCCCccccccccCCHHHHhcCCCCeEEEEC
Confidence 689999999999988 33221 12689999999999999884 36887654 5899999999
Q ss_pred cccccCCCcc-----CCC--Ceeeecccc-c-----cccccceEeecCCCCcchhhHHHHHHhHHHHHHHHHhh
Q psy7978 59 GINSVPDASK-----ASG--QKLVGDVQY-A-----EAKNVASWITPVPGGVGPMTVAMLMNNTVLSAERYIDR 119 (542)
Q Consensus 59 Gin~~~d~~~-----~~~--~kl~GDVdf-~-----~v~~~a~~iTPVPGGVGpmTvamL~~N~v~aa~~~~~~ 119 (542)
|--.+-|+.. ++| ...+=||=. | ........+||=-+|--.-+..-..+.+++...+.+..
T Consensus 207 aRG~vVde~AL~~aL~~g~i~~a~LDV~e~EP~~~~~L~~~nvi~TPHiAg~s~e~~~r~~~~~~~nl~~~~~~ 280 (381)
T PRK00257 207 SRGAVVDNQALREALLSGEDLDAVLDVWEGEPQIDLELADLCTIATPHIAGYSLDGKARGTAQIYQALCRFFGI 280 (381)
T ss_pred CCCcccCHHHHHHHHHhCCCcEEEEeCCCCCCCCChhhhhCCEEEcCccccCCHHHHHHHHHHHHHHHHHHHcC
Confidence 8654322110 111 124557621 1 12233567899878766544444444444444444443
No 97
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=83.20 E-value=1.3 Score=48.19 Aligned_cols=62 Identities=13% Similarity=0.216 Sum_probs=43.4
Q ss_pred CchHHHHHHHhCCCe--eecCCCC------------------CHHHHhhhCCEEEEeccCCC-ceecCcccC--------
Q psy7978 1 MWSSLQTFWLWVLAN--PSMSKTK------------------NIQDVVKSADILVVGIGQPE-YVKGDWIKP-------- 51 (542)
Q Consensus 1 vgkPLa~LL~~~~AT--icHs~T~------------------nl~~~~k~ADIVIsAvG~p~-lI~~d~ik~-------- 51 (542)
+|+-++..|...|++ ++..++. ++.+.++.+|+||+|+|.|. +++.+|+++
T Consensus 193 iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aDvVI~aT~s~~~~i~~~~l~~~~~~~~~~ 272 (423)
T PRK00045 193 MGELVAKHLAEKGVRKITVANRTLERAEELAEEFGGEAIPLDELPEALAEADIVISSTGAPHPIIGKGMVERALKARRHR 272 (423)
T ss_pred HHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCCcEeeHHHHHHHhccCCEEEECCCCCCcEEcHHHHHHHHhhccCC
Confidence 355566677777874 2222221 23456788999999999987 588999954
Q ss_pred CeEEEeccccc
Q psy7978 52 GAVVIDCGINS 62 (542)
Q Consensus 52 GavVIDVGin~ 62 (542)
+.++||++.-+
T Consensus 273 ~~vviDla~Pr 283 (423)
T PRK00045 273 PLLLVDLAVPR 283 (423)
T ss_pred CeEEEEeCCCC
Confidence 47999999654
No 98
>PLN00203 glutamyl-tRNA reductase
Probab=83.12 E-value=1.3 Score=49.85 Aligned_cols=41 Identities=7% Similarity=0.195 Sum_probs=33.1
Q ss_pred CHHHHhhhCCEEEEeccCCC-ceecCcccC----------CeEEEecccccc
Q psy7978 23 NIQDVVKSADILVVGIGQPE-YVKGDWIKP----------GAVVIDCGINSV 63 (542)
Q Consensus 23 nl~~~~k~ADIVIsAvG~p~-lI~~d~ik~----------GavVIDVGin~~ 63 (542)
++.+.+.+|||||+|++.+. +|+.+|+++ -.++||+++-+.
T Consensus 322 dl~~al~~aDVVIsAT~s~~pvI~~e~l~~~~~~~~~~~~~~~~IDLAvPRd 373 (519)
T PLN00203 322 EMLACAAEADVVFTSTSSETPLFLKEHVEALPPASDTVGGKRLFVDISVPRN 373 (519)
T ss_pred hHHHHHhcCCEEEEccCCCCCeeCHHHHHHhhhcccccCCCeEEEEeCCCCC
Confidence 45567889999999999988 488888854 149999998773
No 99
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=82.72 E-value=1 Score=49.22 Aligned_cols=61 Identities=21% Similarity=0.257 Sum_probs=47.0
Q ss_pred CchHHHHHHHhCCCe--eecCC-------------CCCHHHHhhhCCEEEEeccCCCceecC---cccCCeEEEecccc
Q psy7978 1 MWSSLQTFWLWVLAN--PSMSK-------------TKNIQDVVKSADILVVGIGQPEYVKGD---WIKPGAVVIDCGIN 61 (542)
Q Consensus 1 vgkPLa~LL~~~~AT--icHs~-------------T~nl~~~~k~ADIVIsAvG~p~lI~~d---~ik~GavVIDVGin 61 (542)
||+-++..+...||+ ++... ..++.+.++.+|+||.|+|.++.++.+ ++|+|++++.+|..
T Consensus 213 IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~~G~~~~~~~e~v~~aDVVI~atG~~~~i~~~~l~~mk~GgilvnvG~~ 291 (413)
T cd00401 213 VGKGCAQSLRGQGARVIVTEVDPICALQAAMEGYEVMTMEEAVKEGDIFVTTTGNKDIITGEHFEQMKDGAIVCNIGHF 291 (413)
T ss_pred HHHHHHHHHHHCCCEEEEEECChhhHHHHHhcCCEEccHHHHHcCCCEEEECCCCHHHHHHHHHhcCCCCcEEEEeCCC
Confidence 467778888888988 33211 124677888999999999999988754 66999999999954
No 100
>PRK06046 alanine dehydrogenase; Validated
Probab=82.62 E-value=1.2 Score=46.70 Aligned_cols=40 Identities=30% Similarity=0.576 Sum_probs=34.6
Q ss_pred CCHHHHhhhCCEEEEeccCCC-ceecCcccCCeEEEeccccc
Q psy7978 22 KNIQDVVKSADILVVGIGQPE-YVKGDWIKPGAVVIDCGINS 62 (542)
Q Consensus 22 ~nl~~~~k~ADIVIsAvG~p~-lI~~d~ik~GavVIDVGin~ 62 (542)
.++++.++ +||||+|++... +++.+|+|+|+.|.-||.+.
T Consensus 186 ~~~~~~l~-aDiVv~aTps~~P~~~~~~l~~g~hV~~iGs~~ 226 (326)
T PRK06046 186 EDIEEACD-CDILVTTTPSRKPVVKAEWIKEGTHINAIGADA 226 (326)
T ss_pred CCHHHHhh-CCEEEEecCCCCcEecHHHcCCCCEEEecCCCC
Confidence 36777776 999999998766 68999999999999999764
No 101
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=82.50 E-value=1.7 Score=47.18 Aligned_cols=60 Identities=12% Similarity=0.242 Sum_probs=47.5
Q ss_pred CchHHHHHHHhCCCe-eecCCC-----------CCHHHHhhhCCEEEEeccCC----CceecCc---ccCCeEEEeccc
Q psy7978 1 MWSSLQTFWLWVLAN-PSMSKT-----------KNIQDVVKSADILVVGIGQP----EYVKGDW---IKPGAVVIDCGI 60 (542)
Q Consensus 1 vgkPLa~LL~~~~AT-icHs~T-----------~nl~~~~k~ADIVIsAvG~p----~lI~~d~---ik~GavVIDVGi 60 (542)
||+-+|.+|..-|+. +++..+ .++.+.+++||+|+..+..- ++|+.+. .|+|+++|+++-
T Consensus 162 IG~~vA~~~~~fGm~V~~~d~~~~~~~~~~~~~~~l~ell~~sDiVslh~Plt~~T~~li~~~~l~~mk~ga~lIN~aR 240 (409)
T PRK11790 162 IGTQLSVLAESLGMRVYFYDIEDKLPLGNARQVGSLEELLAQSDVVSLHVPETPSTKNMIGAEELALMKPGAILINASR 240 (409)
T ss_pred HHHHHHHHHHHCCCEEEEECCCcccccCCceecCCHHHHHhhCCEEEEcCCCChHHhhccCHHHHhcCCCCeEEEECCC
Confidence 588999999988988 444321 27899999999999998753 3787654 489999999993
No 102
>PLN03139 formate dehydrogenase; Provisional
Probab=82.38 E-value=1.7 Score=47.20 Aligned_cols=63 Identities=10% Similarity=0.167 Sum_probs=47.7
Q ss_pred CchHHHHHHHhCCCe-eecCCC---------------CCHHHHhhhCCEEEEeccCC----CceecCc---ccCCeEEEe
Q psy7978 1 MWSSLQTFWLWVLAN-PSMSKT---------------KNIQDVVKSADILVVGIGQP----EYVKGDW---IKPGAVVID 57 (542)
Q Consensus 1 vgkPLa~LL~~~~AT-icHs~T---------------~nl~~~~k~ADIVIsAvG~p----~lI~~d~---ik~GavVID 57 (542)
||+.++..|..-|+. +.+..+ .++++.++++|+|+..+.-. ++|+.+. .|+|+++|+
T Consensus 210 IG~~vA~~L~afG~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN 289 (386)
T PLN03139 210 IGRLLLQRLKPFNCNLLYHDRLKMDPELEKETGAKFEEDLDAMLPKCDVVVINTPLTEKTRGMFNKERIAKMKKGVLIVN 289 (386)
T ss_pred HHHHHHHHHHHCCCEEEEECCCCcchhhHhhcCceecCCHHHHHhhCCEEEEeCCCCHHHHHHhCHHHHhhCCCCeEEEE
Confidence 588999999888888 333321 27899999999999998743 3666554 489999999
Q ss_pred cccccc
Q psy7978 58 CGINSV 63 (542)
Q Consensus 58 VGin~~ 63 (542)
+|--.+
T Consensus 290 ~aRG~i 295 (386)
T PLN03139 290 NARGAI 295 (386)
T ss_pred CCCCch
Confidence 986543
No 103
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=81.56 E-value=2 Score=46.49 Aligned_cols=117 Identities=21% Similarity=0.174 Sum_probs=70.4
Q ss_pred CchHHHHHHHhCCCe-eecCC----------CCCHHHHhhhCCEEEEecc--------CCCceecCcc---cCCeEEEec
Q psy7978 1 MWSSLQTFWLWVLAN-PSMSK----------TKNIQDVVKSADILVVGIG--------QPEYVKGDWI---KPGAVVIDC 58 (542)
Q Consensus 1 vgkPLa~LL~~~~AT-icHs~----------T~nl~~~~k~ADIVIsAvG--------~p~lI~~d~i---k~GavVIDV 58 (542)
||+.++.+|..-|.. +.+.. -.+|.+.+++||||+..+. .-++++.+.+ |+|+++|++
T Consensus 127 IG~~vA~~l~a~G~~V~~~dp~~~~~~~~~~~~~L~ell~~sDiI~lh~PLt~~g~~~T~~li~~~~l~~mk~gailIN~ 206 (378)
T PRK15438 127 VGRRLQARLEALGIKTLLCDPPRADRGDEGDFRSLDELVQEADILTFHTPLFKDGPYKTLHLADEKLIRSLKPGAILINA 206 (378)
T ss_pred HHHHHHHHHHHCCCEEEEECCcccccccccccCCHHHHHhhCCEEEEeCCCCCCcccccccccCHHHHhcCCCCcEEEEC
Confidence 689999999998998 33221 1269999999999998887 3457776544 899999999
Q ss_pred cccccCCCcc-----CCC--Ceeeecccc-c-----cccccceEeecCCCCcchhhHHHHHHhHHHHHHHHH
Q psy7978 59 GINSVPDASK-----ASG--QKLVGDVQY-A-----EAKNVASWITPVPGGVGPMTVAMLMNNTVLSAERYI 117 (542)
Q Consensus 59 Gin~~~d~~~-----~~~--~kl~GDVdf-~-----~v~~~a~~iTPVPGGVGpmTvamL~~N~v~aa~~~~ 117 (542)
|=-.+=|+.. ++| ...+=||=. | ...+....+||=-+|.-.-+..-....+++...+.+
T Consensus 207 aRG~vVDe~AL~~aL~~g~~~ga~LDV~e~EP~~~~~Ll~~~~i~TPHiAg~s~e~~~~~~~~~~~~l~~~~ 278 (378)
T PRK15438 207 CRGAVVDNTALLTCLNEGQKLSVVLDVWEGEPELNVELLKKVDIGTPHIAGYTLEGKARGTTQVFEAYSKFI 278 (378)
T ss_pred CCchhcCHHHHHHHHHhCCCcEEEEecCCCCCCCchhhhhcCCEECCccCcCcHHHHHHHHHHHHHHHHHHH
Confidence 8643322110 111 124557721 1 122333478998787655444333333333333333
No 104
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=81.29 E-value=1.8 Score=44.66 Aligned_cols=59 Identities=12% Similarity=0.080 Sum_probs=43.4
Q ss_pred CchHHHHHHHhCCCe--ee-cCCCCCHHHHhhhCCEEEEeccCCCc---ee---cCcccCCeEEEecc
Q psy7978 1 MWSSLQTFWLWVLAN--PS-MSKTKNIQDVVKSADILVVGIGQPEY---VK---GDWIKPGAVVIDCG 59 (542)
Q Consensus 1 vgkPLa~LL~~~~AT--ic-Hs~T~nl~~~~k~ADIVIsAvG~p~l---I~---~d~ik~GavVIDVG 59 (542)
+|.++|..|.+.|.+ +. .+.+.++.+.+++||+||.++....+ ++ +..++++++|||..
T Consensus 15 ~G~~lA~~l~~~G~~V~~~~r~~~~~~~~~~~~advvi~~vp~~~~~~v~~~l~~~~~~~~~ivi~~s 82 (308)
T PRK14619 15 WGSTLAGLASANGHRVRVWSRRSGLSLAAVLADADVIVSAVSMKGVRPVAEQVQALNLPPETIIVTAT 82 (308)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCCCCHHHHHhcCCEEEEECChHHHHHHHHHHHHhcCCCCcEEEEeC
Confidence 589999999999887 22 33446899999999999999987632 11 11256788888753
No 105
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=81.25 E-value=2.5 Score=42.93 Aligned_cols=62 Identities=21% Similarity=0.225 Sum_probs=44.2
Q ss_pred CchHHHHHHHhCCCe-eecCC---------------CCCHHHHhhhCCEEEEeccCCCcee---------cCcccCCeEE
Q psy7978 1 MWSSLQTFWLWVLAN-PSMSK---------------TKNIQDVVKSADILVVGIGQPEYVK---------GDWIKPGAVV 55 (542)
Q Consensus 1 vgkPLa~LL~~~~AT-icHs~---------------T~nl~~~~k~ADIVIsAvG~p~lI~---------~d~ik~GavV 55 (542)
||.+++..|.+.|.. ++..+ +.++.+.++++|+||+++..+.-++ ...+++|.+|
T Consensus 13 mG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~~g~~~~~~~~e~~~~~d~vi~~vp~~~~~~~v~~~~~~~~~~~~~g~ii 92 (296)
T PRK11559 13 MGKPMSKNLLKAGYSLVVYDRNPEAVAEVIAAGAETASTAKAVAEQCDVIITMLPNSPHVKEVALGENGIIEGAKPGTVV 92 (296)
T ss_pred HHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeecCCHHHHHhcCCEEEEeCCCHHHHHHHHcCcchHhhcCCCCcEE
Confidence 588999999988766 22221 2367788899999999998544211 1346889999
Q ss_pred Eeccccc
Q psy7978 56 IDCGINS 62 (542)
Q Consensus 56 IDVGin~ 62 (542)
||+++..
T Consensus 93 id~st~~ 99 (296)
T PRK11559 93 IDMSSIA 99 (296)
T ss_pred EECCCCC
Confidence 9998764
No 106
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=80.38 E-value=2.7 Score=42.71 Aligned_cols=61 Identities=16% Similarity=0.145 Sum_probs=42.0
Q ss_pred CchHHHHHHHhCCCe-eecCC---------------CCCHHHHhhhCCEEEEeccCCCcee---------cCcccCCeEE
Q psy7978 1 MWSSLQTFWLWVLAN-PSMSK---------------TKNIQDVVKSADILVVGIGQPEYVK---------GDWIKPGAVV 55 (542)
Q Consensus 1 vgkPLa~LL~~~~AT-icHs~---------------T~nl~~~~k~ADIVIsAvG~p~lI~---------~d~ik~GavV 55 (542)
||.+++..|.+.|-. ++..+ +.++.+.++++|+||.++.-..-++ ...+++|++|
T Consensus 10 mG~~iA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~v~~~~~~~~~~~~~g~ii 89 (291)
T TIGR01505 10 MGSPMSINLAKAGYQLHVTTIGPEVADELLAAGAVTAETARQVTEQADVIFTMVPDSPQVEEVAFGENGIIEGAKPGKTL 89 (291)
T ss_pred HHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCcccCCHHHHHhcCCEEEEecCCHHHHHHHHcCcchHhhcCCCCCEE
Confidence 589999999988766 22222 2367788999999999998653221 1235778888
Q ss_pred Eecccc
Q psy7978 56 IDCGIN 61 (542)
Q Consensus 56 IDVGin 61 (542)
||.++.
T Consensus 90 vd~st~ 95 (291)
T TIGR01505 90 VDMSSI 95 (291)
T ss_pred EECCCC
Confidence 886643
No 107
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=80.37 E-value=1.7 Score=47.71 Aligned_cols=42 Identities=10% Similarity=0.355 Sum_probs=35.8
Q ss_pred CCHHHHhhhCCEEEEeccCCCc-eecCcccCC------eEEEecccccc
Q psy7978 22 KNIQDVVKSADILVVGIGQPEY-VKGDWIKPG------AVVIDCGINSV 63 (542)
Q Consensus 22 ~nl~~~~k~ADIVIsAvG~p~l-I~~d~ik~G------avVIDVGin~~ 63 (542)
.++.+++.++||||||+|.|+. |+.+++... .++||.+.-+.
T Consensus 230 ~el~~~l~~~DvVissTsa~~~ii~~~~ve~a~~~r~~~livDiavPRd 278 (414)
T COG0373 230 EELLEALAEADVVISSTSAPHPIITREMVERALKIRKRLLIVDIAVPRD 278 (414)
T ss_pred HHHHHhhhhCCEEEEecCCCccccCHHHHHHHHhcccCeEEEEecCCCC
Confidence 3678899999999999999997 888888765 58999998764
No 108
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=79.66 E-value=2.3 Score=46.20 Aligned_cols=59 Identities=17% Similarity=0.285 Sum_probs=49.0
Q ss_pred CchHHHHHHHhCCCe-eecCCC--------------CCHHHHhhhCCEEEEeccCCCceecCcc---cCCeEEEecc
Q psy7978 1 MWSSLQTFWLWVLAN-PSMSKT--------------KNIQDVVKSADILVVGIGQPEYVKGDWI---KPGAVVIDCG 59 (542)
Q Consensus 1 vgkPLa~LL~~~~AT-icHs~T--------------~nl~~~~k~ADIVIsAvG~p~lI~~d~i---k~GavVIDVG 59 (542)
+||=.|+.|...||. ++-.-. ..+.+..+.+||+|+|+|..+.|+.+++ |+|+||-+.|
T Consensus 220 vGrG~A~~~rg~GA~ViVtEvDPI~AleA~MdGf~V~~m~~Aa~~gDifiT~TGnkdVi~~eh~~~MkDgaIl~N~G 296 (420)
T COG0499 220 VGRGIAMRLRGMGARVIVTEVDPIRALEAAMDGFRVMTMEEAAKTGDIFVTATGNKDVIRKEHFEKMKDGAILANAG 296 (420)
T ss_pred cchHHHHHhhcCCCeEEEEecCchHHHHHhhcCcEEEEhHHhhhcCCEEEEccCCcCccCHHHHHhccCCeEEeccc
Confidence 588899999999998 332211 2477889999999999999999999887 8999999888
No 109
>KOG1494|consensus
Probab=78.68 E-value=2 Score=45.38 Aligned_cols=42 Identities=21% Similarity=0.301 Sum_probs=33.1
Q ss_pred CchHHHHHHHhC------------CCe-----eecCCCC----------CHHHHhhhCCEEEEeccCCC
Q psy7978 1 MWSSLQTFWLWV------------LAN-----PSMSKTK----------NIQDVVKSADILVVGIGQPE 42 (542)
Q Consensus 1 vgkPLa~LL~~~------------~AT-----icHs~T~----------nl~~~~k~ADIVIsAvG~p~ 42 (542)
||.||++||... |+. +.|..|+ .|+..++.||+||..+|.|.
T Consensus 40 IGQPLSLLlK~np~Vs~LaLYDi~~~~GVaaDlSHI~T~s~V~g~~g~~~L~~al~~advVvIPAGVPR 108 (345)
T KOG1494|consen 40 IGQPLSLLLKLNPLVSELALYDIANTPGVAADLSHINTNSSVVGFTGADGLENALKGADVVVIPAGVPR 108 (345)
T ss_pred cCccHHHHHhcCcccceeeeeecccCCcccccccccCCCCceeccCChhHHHHHhcCCCEEEecCCCCC
Confidence 699999999643 222 6676552 59999999999999999885
No 110
>PLN02306 hydroxypyruvate reductase
Probab=76.03 E-value=3.8 Score=44.42 Aligned_cols=39 Identities=15% Similarity=0.327 Sum_probs=31.9
Q ss_pred CCHHHHhhhCCEEEEeccC----CCceecCcc---cCCeEEEeccc
Q psy7978 22 KNIQDVVKSADILVVGIGQ----PEYVKGDWI---KPGAVVIDCGI 60 (542)
Q Consensus 22 ~nl~~~~k~ADIVIsAvG~----p~lI~~d~i---k~GavVIDVGi 60 (542)
.+|.+.+++||||+.++.- .++|+.+.| |+|+++|++|=
T Consensus 228 ~~L~ell~~sDiV~lh~Plt~~T~~lin~~~l~~MK~ga~lIN~aR 273 (386)
T PLN02306 228 SSMEEVLREADVISLHPVLDKTTYHLINKERLALMKKEAVLVNASR 273 (386)
T ss_pred CCHHHHHhhCCEEEEeCCCChhhhhhcCHHHHHhCCCCeEEEECCC
Confidence 3789999999999998764 347777654 89999999984
No 111
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=75.86 E-value=3.2 Score=42.69 Aligned_cols=62 Identities=16% Similarity=0.132 Sum_probs=42.6
Q ss_pred CchHHHHHHHhCCCe--eecC--------------CCCCHHHHhhhCCEEEEeccCCCcee----c-----CcccCCeEE
Q psy7978 1 MWSSLQTFWLWVLAN--PSMS--------------KTKNIQDVVKSADILVVGIGQPEYVK----G-----DWIKPGAVV 55 (542)
Q Consensus 1 vgkPLa~LL~~~~AT--icHs--------------~T~nl~~~~k~ADIVIsAvG~p~lI~----~-----d~ik~GavV 55 (542)
||.|++..|++.|.. +++. .+.+..+.++++|+||.++.....++ . ..+++|.++
T Consensus 12 mG~~mA~~l~~~G~~V~v~d~~~~~~~~~~~~g~~~~~s~~~~~~~aDvVi~~vp~~~~~~~vl~~~~~i~~~l~~g~lv 91 (296)
T PRK15461 12 MGSPMASNLLKQGHQLQVFDVNPQAVDALVDKGATPAASPAQAAAGAEFVITMLPNGDLVRSVLFGENGVCEGLSRDALV 91 (296)
T ss_pred HHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCcccCCHHHHHhcCCEEEEecCCHHHHHHHHcCcccHhhcCCCCCEE
Confidence 588999999988766 3321 23467778899999999998875222 1 124677777
Q ss_pred Eeccccc
Q psy7978 56 IDCGINS 62 (542)
Q Consensus 56 IDVGin~ 62 (542)
||.++..
T Consensus 92 id~sT~~ 98 (296)
T PRK15461 92 IDMSTIH 98 (296)
T ss_pred EECCCCC
Confidence 7776553
No 112
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=75.83 E-value=3.4 Score=42.71 Aligned_cols=62 Identities=13% Similarity=0.124 Sum_probs=42.6
Q ss_pred CchHHHHHHHhCCCe--eecC-------------CCCCHHHHhhhCCEEEEeccCCCcee-----c----CcccCCeEEE
Q psy7978 1 MWSSLQTFWLWVLAN--PSMS-------------KTKNIQDVVKSADILVVGIGQPEYVK-----G----DWIKPGAVVI 56 (542)
Q Consensus 1 vgkPLa~LL~~~~AT--icHs-------------~T~nl~~~~k~ADIVIsAvG~p~lI~-----~----d~ik~GavVI 56 (542)
||.||+.-|.+.|-. +++. ...+..+.++++|+||+++.-+.-+. . ..+++|.+||
T Consensus 11 MG~~ma~~L~~~G~~v~v~~~~~~~~~~~~~g~~~~~s~~~~~~~advVi~~v~~~~~v~~v~~~~~g~~~~~~~g~ivv 90 (292)
T PRK15059 11 MGTPMAINLARAGHQLHVTTIGPVADELLSLGAVSVETARQVTEASDIIFIMVPDTPQVEEVLFGENGCTKASLKGKTIV 90 (292)
T ss_pred HHHHHHHHHHHCCCeEEEEeCCHhHHHHHHcCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCCcchhccCCCCCEEE
Confidence 688999999988765 3321 12356677899999999998663211 1 1257888999
Q ss_pred eccccc
Q psy7978 57 DCGINS 62 (542)
Q Consensus 57 DVGin~ 62 (542)
|+++..
T Consensus 91 d~sT~~ 96 (292)
T PRK15059 91 DMSSIS 96 (292)
T ss_pred ECCCCC
Confidence 888653
No 113
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=75.54 E-value=2.3 Score=42.54 Aligned_cols=39 Identities=28% Similarity=0.451 Sum_probs=34.4
Q ss_pred CHHHHhhhCCEEEEeccCCCceecCccc---CCeEEEecccccc
Q psy7978 23 NIQDVVKSADILVVGIGQPEYVKGDWIK---PGAVVIDCGINSV 63 (542)
Q Consensus 23 nl~~~~k~ADIVIsAvG~p~lI~~d~ik---~GavVIDVGin~~ 63 (542)
++.+.++++|+||.+++ ++++++++++ ++.+|+|+- |..
T Consensus 90 ~l~~~l~~~dvlIgaT~-~G~~~~~~l~~m~~~~ivf~ls-nP~ 131 (226)
T cd05311 90 TLKEALKGADVFIGVSR-PGVVKKEMIKKMAKDPIVFALA-NPV 131 (226)
T ss_pred CHHHHHhcCCEEEeCCC-CCCCCHHHHHhhCCCCEEEEeC-CCC
Confidence 57678888999999999 9999999998 999999987 764
No 114
>PRK08818 prephenate dehydrogenase; Provisional
Probab=75.28 E-value=2.4 Score=45.74 Aligned_cols=62 Identities=11% Similarity=0.005 Sum_probs=45.4
Q ss_pred CchHHHHHHHhC-CCee--e---cCCCCCHHHHhhhCCEEEEeccCCCce---e--cC---cccCCeEEEeccccc
Q psy7978 1 MWSSLQTFWLWV-LANP--S---MSKTKNIQDVVKSADILVVGIGQPEYV---K--GD---WIKPGAVVIDCGINS 62 (542)
Q Consensus 1 vgkPLa~LL~~~-~ATi--c---Hs~T~nl~~~~k~ADIVIsAvG~p~lI---~--~d---~ik~GavVIDVGin~ 62 (542)
||.=++..|.++ +.+| + +..+.++.+.+++||+||.|+...... . .. ++++|++|.|||...
T Consensus 16 iGgslA~alk~~~~~~V~g~D~~d~~~~~~~~~v~~aDlVilavPv~~~~~~l~~l~~~~~~l~~~~iVtDVgSvK 91 (370)
T PRK08818 16 YGRWLARFLRTRMQLEVIGHDPADPGSLDPATLLQRADVLIFSAPIRHTAALIEEYVALAGGRAAGQLWLDVTSIK 91 (370)
T ss_pred HHHHHHHHHHhcCCCEEEEEcCCccccCCHHHHhcCCCEEEEeCCHHHHHHHHHHHhhhhcCCCCCeEEEECCCCc
Confidence 577788888865 4441 2 223456888899999999999988752 2 12 379999999999764
No 115
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=75.11 E-value=2.5 Score=38.29 Aligned_cols=40 Identities=23% Similarity=0.393 Sum_probs=30.0
Q ss_pred CHHHHhhhCCEEEEeccCCCc------eecCcccCCeEEEeccccc
Q psy7978 23 NIQDVVKSADILVVGIGQPEY------VKGDWIKPGAVVIDCGINS 62 (542)
Q Consensus 23 nl~~~~k~ADIVIsAvG~p~l------I~~d~ik~GavVIDVGin~ 62 (542)
++.+.++++|+||++++.... +....+++|.+|+|++++.
T Consensus 74 ~~~~~~~~~Dvvi~~~~~~~~~~~~~~~~~~~~~~~~~v~D~~~~~ 119 (155)
T cd01065 74 DLEELLAEADLIINTTPVGMKPGDELPLPPSLLKPGGVVYDVVYNP 119 (155)
T ss_pred chhhccccCCEEEeCcCCCCCCCCCCCCCHHHcCCCCEEEEcCcCC
Confidence 344557889999999988653 3334578999999998764
No 116
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=74.60 E-value=6.2 Score=45.65 Aligned_cols=94 Identities=21% Similarity=0.251 Sum_probs=65.5
Q ss_pred HHHhccCC-----cccccCcccc--------CCCCCcE-EEeCCCCCCHHH----HHHHHHHHHHcCCCeEEEccccccC
Q psy7978 335 AVLRGEDS-----FLLYCKLDSQ--------YLEHPPV-TMLIYYTYTPAE----WEIIRKAAKQAGAHDAVVCENWAKG 396 (542)
Q Consensus 335 ~al~~G~~-----~~~~~NL~~H--------~fGvpvV-AiN~F~tDT~~E----i~~i~~~~~~~G~~~~~v~~~~a~G 396 (542)
+.+.+|.| |.-..||+|+ .+|+|+| |+|.. |-.+. |+ +.+.-+.+|++ + +.+ =++=
T Consensus 75 ~~ll~~~~D~ivnVvDAtnLeRnLyltlQLlE~g~p~ilaLNm~--D~A~~~Gi~ID-~~~L~~~LGvP-V-v~t-vA~~ 148 (653)
T COG0370 75 DFLLEGKPDLIVNVVDATNLERNLYLTLQLLELGIPMILALNMI--DEAKKRGIRID-IEKLSKLLGVP-V-VPT-VAKR 148 (653)
T ss_pred HHHhcCCCCEEEEEcccchHHHHHHHHHHHHHcCCCeEEEeccH--hhHHhcCCccc-HHHHHHHhCCC-E-EEE-Eeec
Confidence 56777766 4567899999 6999999 99976 32222 22 33455678997 3 333 3677
Q ss_pred chhHHHHHHHHHHHhccCCCCcccccCCCCCHHHHHHHHH
Q psy7978 397 GAGAADLADAVIKATELKDKQFKYLYDIHDPLLTKIQTVA 436 (542)
Q Consensus 397 G~Ga~~LA~~Vv~a~~~~~~~f~~lY~~~~~l~eKI~~IA 436 (542)
|+|-.+|-+++++..+++..++.+-| .+.+|+.|+.++
T Consensus 149 g~G~~~l~~~i~~~~~~~~~~~~~~y--~~~ie~~i~~l~ 186 (653)
T COG0370 149 GEGLEELKRAIIELAESKTTPREVDY--GEEIEEEIKELE 186 (653)
T ss_pred CCCHHHHHHHHHHhcccccccccccc--chHHHHHHHHHH
Confidence 88999999999998876431344555 457888888776
No 117
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=74.46 E-value=4.5 Score=42.64 Aligned_cols=62 Identities=10% Similarity=0.107 Sum_probs=46.4
Q ss_pred CchHHHHHHH-hCCCe-eecCCC-------------CCHHHHhhhCCEEEEeccCC----CceecCcc---cCCeEEEec
Q psy7978 1 MWSSLQTFWL-WVLAN-PSMSKT-------------KNIQDVVKSADILVVGIGQP----EYVKGDWI---KPGAVVIDC 58 (542)
Q Consensus 1 vgkPLa~LL~-~~~AT-icHs~T-------------~nl~~~~k~ADIVIsAvG~p----~lI~~d~i---k~GavVIDV 58 (542)
||+-++.+|. .-|+. +.|... .++.+.+++||||+..+..- ++|+.+.+ |+|+++|++
T Consensus 156 IG~~va~~l~~~fgm~V~~~~~~~~~~~~~~~~~~~~~l~ell~~sDvv~lh~plt~~T~~li~~~~l~~mk~ga~lIN~ 235 (323)
T PRK15409 156 IGMALAQRAHFGFNMPILYNARRHHKEAEERFNARYCDLDTLLQESDFVCIILPLTDETHHLFGAEQFAKMKSSAIFINA 235 (323)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCCchhhHHhcCcEecCHHHHHHhCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEEC
Confidence 5788888886 66777 443321 26889999999999988754 47877655 899999999
Q ss_pred cccc
Q psy7978 59 GINS 62 (542)
Q Consensus 59 Gin~ 62 (542)
|=-.
T Consensus 236 aRG~ 239 (323)
T PRK15409 236 GRGP 239 (323)
T ss_pred CCcc
Confidence 8543
No 118
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=74.27 E-value=2.6 Score=39.82 Aligned_cols=41 Identities=27% Similarity=0.545 Sum_probs=30.8
Q ss_pred CCHHHHhhhCCEEEEec-----cCCCceecCcc---cCCeEEEeccccc
Q psy7978 22 KNIQDVVKSADILVVGI-----GQPEYVKGDWI---KPGAVVIDCGINS 62 (542)
Q Consensus 22 ~nl~~~~k~ADIVIsAv-----G~p~lI~~d~i---k~GavVIDVGin~ 62 (542)
.++.+.++.+|+||.++ ..|.||+.+++ |+|++|+|+.+..
T Consensus 94 ~~f~~~i~~~d~vI~~~~~~~~~~P~lvt~~~~~~m~~gsvIvDis~D~ 142 (168)
T PF01262_consen 94 SNFAEFIAPADIVIGNGLYWGKRAPRLVTEEMVKSMKPGSVIVDISCDQ 142 (168)
T ss_dssp HHHHHHHHH-SEEEEHHHBTTSS---SBEHHHHHTSSTTEEEEETTGGG
T ss_pred HHHHHHHhhCcEEeeecccCCCCCCEEEEhHHhhccCCCceEEEEEecC
Confidence 36889999999999743 56679998887 7999999998753
No 119
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=73.62 E-value=1.9 Score=48.52 Aligned_cols=34 Identities=26% Similarity=0.561 Sum_probs=28.0
Q ss_pred hhhCCEEEEeccCCC-----ceecCcc---cCCeEEEecccc
Q psy7978 28 VKSADILVVGIGQPE-----YVKGDWI---KPGAVVIDCGIN 61 (542)
Q Consensus 28 ~k~ADIVIsAvG~p~-----lI~~d~i---k~GavVIDVGin 61 (542)
++.+||||.++|.|+ +|..+++ |+|.+|+|+|+.
T Consensus 246 ~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~~ 287 (509)
T PRK09424 246 AKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAAE 287 (509)
T ss_pred cCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEccC
Confidence 467999999999865 7755554 899999999985
No 120
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=73.35 E-value=4.2 Score=42.32 Aligned_cols=39 Identities=18% Similarity=0.473 Sum_probs=28.9
Q ss_pred HHHHhhhCCEEEEeccCCCc---eec---CcccCCeEEEeccccc
Q psy7978 24 IQDVVKSADILVVGIGQPEY---VKG---DWIKPGAVVIDCGINS 62 (542)
Q Consensus 24 l~~~~k~ADIVIsAvG~p~l---I~~---d~ik~GavVIDVGin~ 62 (542)
+.+.++++||||+|+|.|.. +.. .+-+.+.++||++.-+
T Consensus 232 ~~~~l~~aDvVi~at~~~~~~~~~~~~~~~~~~~~~~viDlavPr 276 (311)
T cd05213 232 LLELLNEADVVISATGAPHYAKIVERAMKKRSGKPRLIVDLAVPR 276 (311)
T ss_pred HHHHHhcCCEEEECCCCCchHHHHHHHHhhCCCCCeEEEEeCCCC
Confidence 45667889999999999987 221 2223678999999655
No 121
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=72.63 E-value=6.1 Score=40.70 Aligned_cols=62 Identities=16% Similarity=0.184 Sum_probs=44.0
Q ss_pred CchHHHHHHHhCCCe-eecCC---------------CCCHHHHhhh---CCEEEEeccCCCc----ee--cCcccCCeEE
Q psy7978 1 MWSSLQTFWLWVLAN-PSMSK---------------TKNIQDVVKS---ADILVVGIGQPEY----VK--GDWIKPGAVV 55 (542)
Q Consensus 1 vgkPLa~LL~~~~AT-icHs~---------------T~nl~~~~k~---ADIVIsAvG~p~l----I~--~d~ik~GavV 55 (542)
||.|++.-|++.+.+ ++..+ +.++++.+++ +|+||+++..+.. +. ...+++|.+|
T Consensus 11 mG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~~~s~~~~~~~~~~advVi~~vp~~~~~~~v~~~i~~~l~~g~iv 90 (299)
T PRK12490 11 MGGNMAERLREDGHEVVGYDVNQEAVDVAGKLGITARHSLEELVSKLEAPRTIWVMVPAGEVTESVIKDLYPLLSPGDIV 90 (299)
T ss_pred HHHHHHHHHHhCCCEEEEEECCHHHHHHHHHCCCeecCCHHHHHHhCCCCCEEEEEecCchHHHHHHHHHhccCCCCCEE
Confidence 588999999988876 22222 2356777766 6999999998732 21 1346899999
Q ss_pred Eeccccc
Q psy7978 56 IDCGINS 62 (542)
Q Consensus 56 IDVGin~ 62 (542)
||+++..
T Consensus 91 id~st~~ 97 (299)
T PRK12490 91 VDGGNSR 97 (299)
T ss_pred EECCCCC
Confidence 9998764
No 122
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=71.99 E-value=4.4 Score=44.00 Aligned_cols=62 Identities=18% Similarity=0.247 Sum_probs=42.6
Q ss_pred CchHHHHHHHhCCCe-eecCCC----------------CCHHHHh---------------hhCCEEEEeccCC-------
Q psy7978 1 MWSSLQTFWLWVLAN-PSMSKT----------------KNIQDVV---------------KSADILVVGIGQP------- 41 (542)
Q Consensus 1 vgkPLa~LL~~~~AT-icHs~T----------------~nl~~~~---------------k~ADIVIsAvG~p------- 41 (542)
||.|+|..|.++|-+ ++.-.+ +++.+.+ +.||+||.+++.|
T Consensus 14 ~G~~~A~~La~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~l~~~~~~g~l~~~~~~~~aDvvii~vptp~~~~~~~ 93 (415)
T PRK11064 14 IGLPTAAAFASRQKQVIGVDINQHAVDTINRGEIHIVEPDLDMVVKTAVEGGYLRATTTPEPADAFLIAVPTPFKGDHEP 93 (415)
T ss_pred hhHHHHHHHHhCCCEEEEEeCCHHHHHHHHCCCCCcCCCCHHHHHHHHhhcCceeeecccccCCEEEEEcCCCCCCCCCc
Confidence 689999999998876 322222 2333332 2799999999998
Q ss_pred --Ccee------cCcccCCeEEEeccccc
Q psy7978 42 --EYVK------GDWIKPGAVVIDCGINS 62 (542)
Q Consensus 42 --~lI~------~d~ik~GavVIDVGin~ 62 (542)
..+. ...+++|++||+-.+..
T Consensus 94 dl~~v~~~~~~i~~~l~~g~iVI~~STv~ 122 (415)
T PRK11064 94 DLTYVEAAAKSIAPVLKKGDLVILESTSP 122 (415)
T ss_pred ChHHHHHHHHHHHHhCCCCCEEEEeCCCC
Confidence 2222 34578999999877654
No 123
>COG3288 PntA NAD/NADP transhydrogenase alpha subunit [Energy production and conversion]
Probab=71.42 E-value=4.5 Score=43.23 Aligned_cols=90 Identities=21% Similarity=0.332 Sum_probs=56.1
Q ss_pred HHHHhhhCCEEEEeccCCC-----ceecCcc---cCCeEEEeccccccCCCc-cCCCCeeeeccccccccccceEeecCC
Q psy7978 24 IQDVVKSADILVVGIGQPE-----YVKGDWI---KPGAVVIDCGINSVPDAS-KASGQKLVGDVQYAEAKNVASWITPVP 94 (542)
Q Consensus 24 l~~~~k~ADIVIsAvG~p~-----lI~~d~i---k~GavVIDVGin~~~d~~-~~~~~kl~GDVdf~~v~~~a~~iTPVP 94 (542)
+.+++++.||||+-+=.|| ||+.+|+ |||.||||.-...-.+.. .+.+ +++ ....|. -.-+|-+|
T Consensus 238 ~a~~~~~~DivITTAlIPGrpAP~Lvt~~mv~sMkpGSViVDlAa~~GGNce~t~pg-~~v---~~~gV~--iig~~nlp 311 (356)
T COG3288 238 VAEQAKEVDIVITTALIPGRPAPKLVTAEMVASMKPGSVIVDLAAETGGNCELTEPG-KVV---TKNGVK--IIGYTNLP 311 (356)
T ss_pred HHHHhcCCCEEEEecccCCCCCchhhHHHHHHhcCCCcEEEEehhhcCCCcccccCC-eEE---EeCCeE--EEeecCcc
Confidence 5688999999999885554 8999998 899999998765411100 0001 111 101111 22356677
Q ss_pred CCcchhhHHHHHHhHHHHHHHHHhh
Q psy7978 95 GGVGPMTVAMLMNNTVLSAERYIDR 119 (542)
Q Consensus 95 GGVGpmTvamL~~N~v~aa~~~~~~ 119 (542)
|-+-.-....--+|++..-+.....
T Consensus 312 ~r~a~~aS~LYa~Nl~~~l~ll~~~ 336 (356)
T COG3288 312 GRLAAQASQLYATNLVNLLKLLCKK 336 (356)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHhcc
Confidence 7776666667778887766554444
No 124
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=70.18 E-value=4.9 Score=40.77 Aligned_cols=98 Identities=16% Similarity=0.198 Sum_probs=58.4
Q ss_pred CchHHHHHHHhCCCe-eecCCCC----C---------------HHH-HhhhCCEEEEeccCC---C----ceecCcccCC
Q psy7978 1 MWSSLQTFWLWVLAN-PSMSKTK----N---------------IQD-VVKSADILVVGIGQP---E----YVKGDWIKPG 52 (542)
Q Consensus 1 vgkPLa~LL~~~~AT-icHs~T~----n---------------l~~-~~k~ADIVIsAvG~p---~----lI~~d~ik~G 52 (542)
+|++++..|...++. .+..++. . +.+ ...++|+||.+++.. . .+..++++++
T Consensus 128 ~g~aia~~L~~~g~~v~v~~R~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~DivInatp~gm~~~~~~~~~~~~~l~~~ 207 (270)
T TIGR00507 128 AARAVALPLLKADCNVIIANRTVSKAEELAERFQRYGEIQAFSMDELPLHRVDLIINATSAGMSGNIDEPPVPAEKLKEG 207 (270)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhhcCceEEechhhhcccCccEEEECCCCCCCCCCCCCCCCHHHcCCC
Confidence 478888888888877 2223331 1 111 124789999999873 2 2456779999
Q ss_pred eEEEeccccccCCCccCCCCeeeeccccccccccceEeecCCCCcchhhHHHHHHhHHHHHHHHHh
Q psy7978 53 AVVIDCGINSVPDASKASGQKLVGDVQYAEAKNVASWITPVPGGVGPMTVAMLMNNTVLSAERYID 118 (542)
Q Consensus 53 avVIDVGin~~~d~~~~~~~kl~GDVdf~~v~~~a~~iTPVPGGVGpmTvamL~~N~v~aa~~~~~ 118 (542)
.+|+|+-.+..+. .|-...+..++ .-+ .| .-||+.+...+.+.+.+
T Consensus 208 ~~v~D~~y~p~~T-------------~ll~~A~~~G~-~~v-dG-----~~Ml~~Qa~~~f~~w~g 253 (270)
T TIGR00507 208 MVVYDMVYNPGET-------------PFLAEAKSLGT-KTI-DG-----LGMLVAQAALAFELWTG 253 (270)
T ss_pred CEEEEeccCCCCC-------------HHHHHHHHCCC-eee-CC-----HHHHHHHHHHHHHHHcC
Confidence 9999997664211 12222222222 222 33 56888888877766543
No 125
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=70.09 E-value=6.4 Score=41.79 Aligned_cols=61 Identities=10% Similarity=0.223 Sum_probs=47.9
Q ss_pred CchHHHHHHHhCCCe-eecCCCC-------------CHHHHhhhCCEEEEeccCC----CceecCcc---cCCeEEEecc
Q psy7978 1 MWSSLQTFWLWVLAN-PSMSKTK-------------NIQDVVKSADILVVGIGQP----EYVKGDWI---KPGAVVIDCG 59 (542)
Q Consensus 1 vgkPLa~LL~~~~AT-icHs~T~-------------nl~~~~k~ADIVIsAvG~p----~lI~~d~i---k~GavVIDVG 59 (542)
||+=+|..+..-|+. +.|++.+ ++.+.+++||||+..++-- ++|+.+.+ |+|+++|++|
T Consensus 157 IG~avA~r~~~Fgm~v~y~~~~~~~~~~~~~~~~y~~l~ell~~sDii~l~~Plt~~T~hLin~~~l~~mk~ga~lVNta 236 (324)
T COG1052 157 IGQAVARRLKGFGMKVLYYDRSPNPEAEKELGARYVDLDELLAESDIISLHCPLTPETRHLINAEELAKMKPGAILVNTA 236 (324)
T ss_pred HHHHHHHHHhcCCCEEEEECCCCChHHHhhcCceeccHHHHHHhCCEEEEeCCCChHHhhhcCHHHHHhCCCCeEEEECC
Confidence 577788888866888 6776554 3889999999999998753 47887655 8999999988
Q ss_pred cc
Q psy7978 60 IN 61 (542)
Q Consensus 60 in 61 (542)
=-
T Consensus 237 RG 238 (324)
T COG1052 237 RG 238 (324)
T ss_pred Cc
Confidence 44
No 126
>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional
Probab=69.80 E-value=5.9 Score=42.22 Aligned_cols=59 Identities=8% Similarity=-0.053 Sum_probs=42.3
Q ss_pred chHHHHHHHhCCCe--eecC-------------------CCCCHHHHhhhCCEEEEeccCCCcee------cCcccCCeE
Q psy7978 2 WSSLQTFWLWVLAN--PSMS-------------------KTKNIQDVVKSADILVVGIGQPEYVK------GDWIKPGAV 54 (542)
Q Consensus 2 gkPLa~LL~~~~AT--icHs-------------------~T~nl~~~~k~ADIVIsAvG~p~lI~------~d~ik~Gav 54 (542)
|.|+|..|.+.|-. ++.. .+.+..+..++||+||.++..+..+. .+.+++|++
T Consensus 32 G~~MA~~La~aG~~V~v~Dr~~~~l~~~~~~~l~~~Gi~~asd~~eaa~~ADvVIlaVP~~~~v~~Vl~~L~~~L~~g~I 111 (342)
T PRK12557 32 GSRMAIEFAEAGHDVVLAEPNRSILSEELWKKVEDAGVKVVSDDAEAAKHGEIHILFTPFGKKTVEIAKNILPHLPENAV 111 (342)
T ss_pred HHHHHHHHHhCCCeEEEEECCHHHhhHHHHHHHHHCCCEEeCCHHHHHhCCCEEEEECCCcHHHHHHHHHHHhhCCCCCE
Confidence 78999999888755 2221 12366777899999999999776111 244688999
Q ss_pred EEeccc
Q psy7978 55 VIDCGI 60 (542)
Q Consensus 55 VIDVGi 60 (542)
|||+++
T Consensus 112 VId~ST 117 (342)
T PRK12557 112 ICNTCT 117 (342)
T ss_pred EEEecC
Confidence 999876
No 127
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=66.23 E-value=6.5 Score=40.85 Aligned_cols=62 Identities=23% Similarity=0.143 Sum_probs=43.3
Q ss_pred CchHHHHHHHhCCCe--e------------------ecCCCCCH-HHHhhhCCEEEEeccCCCc---ee--cCcccCCeE
Q psy7978 1 MWSSLQTFWLWVLAN--P------------------SMSKTKNI-QDVVKSADILVVGIGQPEY---VK--GDWIKPGAV 54 (542)
Q Consensus 1 vgkPLa~LL~~~~AT--i------------------cHs~T~nl-~~~~k~ADIVIsAvG~p~l---I~--~d~ik~Gav 54 (542)
||+-++..|..+|-- + ..+.+.|. .+..+.||+||.|+..... ++ ...+|+|++
T Consensus 14 iG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lgv~d~~~~~~~~~~~~~aD~VivavPi~~~~~~l~~l~~~l~~g~i 93 (279)
T COG0287 14 MGGSLARALKEAGLVVRIIGRDRSAATLKAALELGVIDELTVAGLAEAAAEADLVIVAVPIEATEEVLKELAPHLKKGAI 93 (279)
T ss_pred HHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhcCcccccccchhhhhcccCCEEEEeccHHHHHHHHHHhcccCCCCCE
Confidence 466777777776543 2 23333444 5667789999999998764 22 126899999
Q ss_pred EEeccccc
Q psy7978 55 VIDCGINS 62 (542)
Q Consensus 55 VIDVGin~ 62 (542)
|.|||...
T Consensus 94 v~Dv~S~K 101 (279)
T COG0287 94 VTDVGSVK 101 (279)
T ss_pred EEeccccc
Confidence 99999874
No 128
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=65.95 E-value=8.2 Score=39.74 Aligned_cols=62 Identities=16% Similarity=0.210 Sum_probs=43.4
Q ss_pred CchHHHHHHHhCCCe--eecCC--------------CCCHHHHhhh---CCEEEEeccCCCcee------cCcccCCeEE
Q psy7978 1 MWSSLQTFWLWVLAN--PSMSK--------------TKNIQDVVKS---ADILVVGIGQPEYVK------GDWIKPGAVV 55 (542)
Q Consensus 1 vgkPLa~LL~~~~AT--icHs~--------------T~nl~~~~k~---ADIVIsAvG~p~lI~------~d~ik~GavV 55 (542)
||.|++.-|++.|.. ++... +.++.+.++. +|+||+++.....+. .+.+++|.+|
T Consensus 11 MG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~~~~~~e~~~~~~~~dvvi~~v~~~~~~~~v~~~l~~~l~~g~iv 90 (301)
T PRK09599 11 MGGNMARRLLRGGHEVVGYDRNPEAVEALAEEGATGADSLEELVAKLPAPRVVWLMVPAGEITDATIDELAPLLSPGDIV 90 (301)
T ss_pred HHHHHHHHHHHCCCeEEEEECCHHHHHHHHHCCCeecCCHHHHHhhcCCCCEEEEEecCCcHHHHHHHHHHhhCCCCCEE
Confidence 589999999988877 33221 1256666665 699999998763221 2457889999
Q ss_pred Eeccccc
Q psy7978 56 IDCGINS 62 (542)
Q Consensus 56 IDVGin~ 62 (542)
||.++..
T Consensus 91 id~st~~ 97 (301)
T PRK09599 91 IDGGNSY 97 (301)
T ss_pred EeCCCCC
Confidence 9998764
No 129
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=65.49 E-value=9 Score=43.01 Aligned_cols=62 Identities=21% Similarity=0.215 Sum_probs=45.4
Q ss_pred CchHHHHHHHhCCCe-eecCCC----------------------CCHHHHhhh---CCEEEEeccCCCceec------Cc
Q psy7978 1 MWSSLQTFWLWVLAN-PSMSKT----------------------KNIQDVVKS---ADILVVGIGQPEYVKG------DW 48 (542)
Q Consensus 1 vgkPLa~LL~~~~AT-icHs~T----------------------~nl~~~~k~---ADIVIsAvG~p~lI~~------d~ 48 (542)
||+|||.-|+++|-+ .++-+| .++++.++. +|+||+.+.-+.-++. ..
T Consensus 17 MG~~mA~nL~~~G~~V~V~NRt~~k~~~l~~~~~~~Ga~~~~~a~s~~e~v~~l~~~dvIi~~v~~~~aV~~Vi~gl~~~ 96 (493)
T PLN02350 17 MGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGNLPLYGFKDPEDFVLSIQKPRSVIILVKAGAPVDQTIKALSEY 96 (493)
T ss_pred HHHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhhhcCCcccccCCCHHHHHhcCCCCCEEEEECCCcHHHHHHHHHHHhh
Confidence 699999999998877 222222 245566665 9999999987764332 34
Q ss_pred ccCCeEEEeccccc
Q psy7978 49 IKPGAVVIDCGINS 62 (542)
Q Consensus 49 ik~GavVIDVGin~ 62 (542)
+++|.+|||.|+..
T Consensus 97 l~~G~iiID~sT~~ 110 (493)
T PLN02350 97 MEPGDCIIDGGNEW 110 (493)
T ss_pred cCCCCEEEECCCCC
Confidence 78999999999874
No 130
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=63.52 E-value=11 Score=40.04 Aligned_cols=118 Identities=20% Similarity=0.276 Sum_probs=71.8
Q ss_pred CchHHHHHHHhCCCe-eecCC-C-------------CCHHHHhhhCCEEEEeccCC----CceecCcc---cCCeEEEec
Q psy7978 1 MWSSLQTFWLWVLAN-PSMSK-T-------------KNIQDVVKSADILVVGIGQP----EYVKGDWI---KPGAVVIDC 58 (542)
Q Consensus 1 vgkPLa~LL~~~~AT-icHs~-T-------------~nl~~~~k~ADIVIsAvG~p----~lI~~d~i---k~GavVIDV 58 (542)
||+=++.+|..-|.. ++++. + .+|.+.+++||||+.-+..- ++|+.+-| |+|+++|++
T Consensus 153 IG~~va~~l~afgm~v~~~d~~~~~~~~~~~~~~~~~~Ld~lL~~sDiv~lh~PlT~eT~g~i~~~~~a~MK~gailIN~ 232 (324)
T COG0111 153 IGRAVAKRLKAFGMKVIGYDPYSPRERAGVDGVVGVDSLDELLAEADILTLHLPLTPETRGLINAEELAKMKPGAILINA 232 (324)
T ss_pred HHHHHHHHHHhCCCeEEEECCCCchhhhccccceecccHHHHHhhCCEEEEcCCCCcchhcccCHHHHhhCCCCeEEEEC
Confidence 467788888888888 55544 1 35999999999999998864 57887665 899999999
Q ss_pred cccccCCCcc-----CCCCeeee---cccccc-------ccc-cceEeecCCCCcchhhHHHHHHhHHHHHHHHHhh
Q psy7978 59 GINSVPDASK-----ASGQKLVG---DVQYAE-------AKN-VASWITPVPGGVGPMTVAMLMNNTVLSAERYIDR 119 (542)
Q Consensus 59 Gin~~~d~~~-----~~~~kl~G---DVdf~~-------v~~-~a~~iTPVPGGVGpmTvamL~~N~v~aa~~~~~~ 119 (542)
+=-.+-|+.. ++| ++.| ||-.++ +.+ --..+||=-||.---+...+..-+.+...+.+..
T Consensus 233 aRG~vVde~aL~~AL~~G-~i~gA~lDVf~~EPl~~~~pL~~~pnV~~TPHia~~T~ea~~~~~~~~~~~i~~~l~g 308 (324)
T COG0111 233 ARGGVVDEDALLAALDSG-KIAGAALDVFEEEPLPADSPLWDLPNVILTPHIGGSTDEAQERVAEIVAENIVRYLAG 308 (324)
T ss_pred CCcceecHHHHHHHHHcC-CcceEEecCCCCCCCCCCChhhcCCCeEECCcccccCHHHHHHHHHHHHHHHHHHHcC
Confidence 8443211110 112 3433 552111 111 1235688877776654455555555554444444
No 131
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=63.48 E-value=10 Score=39.14 Aligned_cols=75 Identities=20% Similarity=0.248 Sum_probs=45.8
Q ss_pred HHHHhhhCCEEEEe--ccC---CC-ceecCcccCCeEEEeccccccCCCccCCCCeeeeccccccccccceEeecCCCCc
Q psy7978 24 IQDVVKSADILVVG--IGQ---PE-YVKGDWIKPGAVVIDCGINSVPDASKASGQKLVGDVQYAEAKNVASWITPVPGGV 97 (542)
Q Consensus 24 l~~~~k~ADIVIsA--vG~---p~-lI~~d~ik~GavVIDVGin~~~d~~~~~~~kl~GDVdf~~v~~~a~~iTPVPGGV 97 (542)
+.+.++++||||.| +|- +. -+..++++++.+|+|+=.+..+. . |=...+..++ .-+. |
T Consensus 186 ~~~~~~~aDiVInaTp~Gm~~~~~~~~~~~~l~~~~~v~DivY~P~~T-------~------ll~~A~~~G~-~~~~-G- 249 (284)
T PRK12549 186 LAAALAAADGLVHATPTGMAKHPGLPLPAELLRPGLWVADIVYFPLET-------E------LLRAARALGC-RTLD-G- 249 (284)
T ss_pred hHhhhCCCCEEEECCcCCCCCCCCCCCCHHHcCCCcEEEEeeeCCCCC-------H------HHHHHHHCCC-eEec-C-
Confidence 34456789999999 452 22 26778899999999988775321 1 2111222232 2233 3
Q ss_pred chhhHHHHHHhHHHHHHHHHh
Q psy7978 98 GPMTVAMLMNNTVLSAERYID 118 (542)
Q Consensus 98 GpmTvamL~~N~v~aa~~~~~ 118 (542)
.-||+.+-+.+.+.+.+
T Consensus 250 ----~~ML~~Qa~~~f~~wtg 266 (284)
T PRK12549 250 ----GGMAVFQAVDAFELFTG 266 (284)
T ss_pred ----HHHHHHHHHHHHHHhcC
Confidence 56888888877766543
No 132
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=62.54 E-value=9.4 Score=41.11 Aligned_cols=39 Identities=21% Similarity=0.441 Sum_probs=28.9
Q ss_pred CHHHHhhhCCEEEEeccCCCc---------ee------cCcccCCeEEEecccc
Q psy7978 23 NIQDVVKSADILVVGIGQPEY---------VK------GDWIKPGAVVIDCGIN 61 (542)
Q Consensus 23 nl~~~~k~ADIVIsAvG~p~l---------I~------~d~ik~GavVIDVGin 61 (542)
++.+.++++|+||.+++.|.- +. ...+++|.+|||.++.
T Consensus 69 ~~~~~~~~advvii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~~STv 122 (411)
T TIGR03026 69 DYEDAIRDADVIIICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVLESTV 122 (411)
T ss_pred CHHHHHhhCCEEEEEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEEeCcC
Confidence 556678899999999998841 11 2346889999998754
No 133
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=62.49 E-value=24 Score=36.16 Aligned_cols=152 Identities=14% Similarity=0.169 Sum_probs=87.8
Q ss_pred eehhhhh--cCCCCCCCCCCCCCccc------CccCHHHHhccCCcc----cccCccccCCCCCcE---EEeCCCCCCHH
Q psy7978 306 TVRALKM--HGGGPSVVSGQPLKPEY------TENTRAVLRGEDSFL----LYCKLDSQYLEHPPV---TMLIYYTYTPA 370 (542)
Q Consensus 306 TvRALK~--HGG~~~~~~g~p~~~~l------~~en~~al~~G~~~~----~~~NL~~H~fGvpvV---AiN~F~tDT~~ 370 (542)
|++.++. -+|+.-...|-|..+-+ .+.+..||+.|..+. ....+.++...+|++ ..|-+..--
T Consensus 26 ~~~~~~~l~~~Gad~iElGiPfsDP~aDGpvIq~a~~~al~~G~~~~~~~~~v~~ir~~~~~~plv~m~Y~Npi~~~G-- 103 (256)
T TIGR00262 26 SLEIIKTLIEAGADALELGVPFSDPLADGPTIQAADLRALRAGMTPEKCFELLKKVRQKHPNIPIGLLTYYNLIFRKG-- 103 (256)
T ss_pred HHHHHHHHHHcCCCEEEECCCCCCCCCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEEeccHHhhhh--
Confidence 4555553 37777666676664433 445677889995432 222233223578877 556322211
Q ss_pred HHHHHHHHHHHcCCCeEEEccccccCchhHHHHHHHHHHHhccCCCCcccccCCCCCHHHHHHHHHHHH---------hc
Q psy7978 371 EWEIIRKAAKQAGAHDAVVCENWAKGGAGAADLADAVIKATELKDKQFKYLYDIHDPLLTKIQTVAREM---------YG 441 (542)
Q Consensus 371 Ei~~i~~~~~~~G~~~~~v~~~~a~GG~Ga~~LA~~Vv~a~~~~~~~f~~lY~~~~~l~eKI~~IA~~I---------YG 441 (542)
++...+.|+++|+..+.+-+- ..+-....++.|.+..-.+-++...+.|.+ .|+.|+... +|
T Consensus 104 -~e~f~~~~~~aGvdgviipDl-------p~ee~~~~~~~~~~~gl~~i~lv~P~T~~e-ri~~i~~~~~gfiy~vs~~G 174 (256)
T TIGR00262 104 -VEEFYAKCKEVGVDGVLVADL-------PLEESGDLVEAAKKHGVKPIFLVAPNADDE-RLKQIAEKSQGFVYLVSRAG 174 (256)
T ss_pred -HHHHHHHHHHcCCCEEEECCC-------ChHHHHHHHHHHHHCCCcEEEEECCCCCHH-HHHHHHHhCCCCEEEEECCC
Confidence 123345677899964444332 223455677777553313445667777754 444444432 45
Q ss_pred CCcee--cChHHHHHHHHHHHcCCCCCceeE
Q psy7978 442 VHKVD--CPQPVLEKLQKLERLGYGRLTVCM 470 (542)
Q Consensus 442 A~~V~--~s~~A~~~l~~~e~~G~~~lPVCm 470 (542)
..+.. |.+...+.++++.+. .+.|||+
T Consensus 175 ~TG~~~~~~~~~~~~i~~lr~~--~~~pi~v 203 (256)
T TIGR00262 175 VTGARNRAASALNELVKRLKAY--SAKPVLV 203 (256)
T ss_pred CCCCcccCChhHHHHHHHHHhh--cCCCEEE
Confidence 55664 889999999999996 3568886
No 134
>PRK15452 putative protease; Provisional
Probab=62.33 E-value=35 Score=37.84 Aligned_cols=139 Identities=12% Similarity=0.171 Sum_probs=77.7
Q ss_pred CCCEEEEEeeehhhh--hcCCCCCCCCCCCCC------cccCccCHHHHhccCCcccccCccccCCCCCcE-EEeCCCCC
Q psy7978 297 IPDAVVLVTTVRALK--MHGGGPSVVSGQPLK------PEYTENTRAVLRGEDSFLLYCKLDSQYLEHPPV-TMLIYYTY 367 (542)
Q Consensus 297 ~PdavVlVATvRALK--~HGG~~~~~~g~p~~------~~l~~en~~al~~G~~~~~~~NL~~H~fGvpvV-AiN~F~tD 367 (542)
+|...|-|-|.-+|| .+.|+..+-.|-+-- ..++. +.+++. . ++ -|..|+.+. ++|.++.
T Consensus 3 ~peLlapag~~e~l~aAi~~GADaVY~G~~~~~~R~~~~~f~~---edl~ea-----v-~~-ah~~g~kvyvt~n~i~~- 71 (443)
T PRK15452 3 KPELLSPAGTLKNMRYAFAYGADAVYAGQPRYSLRVRNNEFNH---ENLALG-----I-NE-AHALGKKFYVVVNIAPH- 71 (443)
T ss_pred ccEEEEECCCHHHHHHHHHCCCCEEEECCCccchhhhccCCCH---HHHHHH-----H-HH-HHHcCCEEEEEecCcCC-
Confidence 477777888888887 445554444432110 12222 223333 1 11 157899999 9999987
Q ss_pred CHHHHHHHHHHHH---HcCCCeEEEccccccCchhHHHHHHHHHHHhccCCCCcccccCCCCCHHHHHHHHHHHHhcCCc
Q psy7978 368 TPAEWEIIRKAAK---QAGAHDAVVCENWAKGGAGAADLADAVIKATELKDKQFKYLYDIHDPLLTKIQTVAREMYGVHK 444 (542)
Q Consensus 368 T~~Ei~~i~~~~~---~~G~~~~~v~~~~a~GG~Ga~~LA~~Vv~a~~~~~~~f~~lY~~~~~l~eKI~~IA~~IYGA~~ 444 (542)
++|++.+.++.+ +.|+..+++++ -|...+++.. . +..+++.-|..+-.=.+-++.... +|++.
T Consensus 72 -e~el~~~~~~l~~l~~~gvDgvIV~d------~G~l~~~ke~---~--p~l~ih~stqlni~N~~a~~f~~~--lG~~r 137 (443)
T PRK15452 72 -NAKLKTFIRDLEPVIAMKPDALIMSD------PGLIMMVREH---F--PEMPIHLSVQANAVNWATVKFWQQ--MGLTR 137 (443)
T ss_pred -HHHHHHHHHHHHHHHhCCCCEEEEcC------HHHHHHHHHh---C--CCCeEEEEecccCCCHHHHHHHHH--CCCcE
Confidence 566666665444 67886444443 3556555542 1 111222222222222334444444 69999
Q ss_pred eecChHH-HHHHHHHHH
Q psy7978 445 VDCPQPV-LEKLQKLER 460 (542)
Q Consensus 445 V~~s~~A-~~~l~~~e~ 460 (542)
|++|.+- .++|+.+.+
T Consensus 138 vvLSrELsl~EI~~i~~ 154 (443)
T PRK15452 138 VILSRELSLEEIEEIRQ 154 (443)
T ss_pred EEECCcCCHHHHHHHHh
Confidence 9999887 578888763
No 135
>PRK08507 prephenate dehydrogenase; Validated
Probab=61.66 E-value=9.4 Score=38.66 Aligned_cols=60 Identities=18% Similarity=0.160 Sum_probs=40.2
Q ss_pred CchHHHHHHHhCCC--e--eecC---------------CCCCHHHHhhhCCEEEEeccCCCcee-----cCcccCCeEEE
Q psy7978 1 MWSSLQTFWLWVLA--N--PSMS---------------KTKNIQDVVKSADILVVGIGQPEYVK-----GDWIKPGAVVI 56 (542)
Q Consensus 1 vgkPLa~LL~~~~A--T--icHs---------------~T~nl~~~~k~ADIVIsAvG~p~lI~-----~d~ik~GavVI 56 (542)
||.+++..|.+.+. + .+.. .+.+..+.. ++|+||.|+....+.. .. ++++++|+
T Consensus 11 mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~~g~~~~~~~~~~~~-~aD~Vilavp~~~~~~~~~~l~~-l~~~~iv~ 88 (275)
T PRK08507 11 MGGSLGLALKEKGLISKVYGYDHNELHLKKALELGLVDEIVSFEELK-KCDVIFLAIPVDAIIEILPKLLD-IKENTTII 88 (275)
T ss_pred HHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHCCCCcccCCHHHHh-cCCEEEEeCcHHHHHHHHHHHhc-cCCCCEEE
Confidence 57889888887764 2 2211 122455544 5999999998765422 12 68899999
Q ss_pred eccccc
Q psy7978 57 DCGINS 62 (542)
Q Consensus 57 DVGin~ 62 (542)
|+|+..
T Consensus 89 d~gs~k 94 (275)
T PRK08507 89 DLGSTK 94 (275)
T ss_pred ECccch
Confidence 999864
No 136
>PLN02688 pyrroline-5-carboxylate reductase
Probab=59.54 E-value=11 Score=37.74 Aligned_cols=57 Identities=16% Similarity=0.283 Sum_probs=39.2
Q ss_pred CchHHHHHHHhCCC----e--eecCC---------------CCCHHHHhhhCCEEEEeccCCCceec------CcccCCe
Q psy7978 1 MWSSLQTFWLWVLA----N--PSMSK---------------TKNIQDVVKSADILVVGIGQPEYVKG------DWIKPGA 53 (542)
Q Consensus 1 vgkPLa~LL~~~~A----T--icHs~---------------T~nl~~~~k~ADIVIsAvG~p~lI~~------d~ik~Ga 53 (542)
||.+++.-|++.+. + ++..+ +.+..+.++++|+||.++ +|..+.. ..+++|.
T Consensus 11 mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~~~~~~g~~~~~~~~e~~~~aDvVil~v-~~~~~~~vl~~l~~~~~~~~ 89 (266)
T PLN02688 11 MAEAIARGLVASGVVPPSRISTADDSNPARRDVFQSLGVKTAASNTEVVKSSDVIILAV-KPQVVKDVLTELRPLLSKDK 89 (266)
T ss_pred HHHHHHHHHHHCCCCCcceEEEEeCCCHHHHHHHHHcCCEEeCChHHHHhcCCEEEEEE-CcHHHHHHHHHHHhhcCCCC
Confidence 57888888888765 3 33122 235667788999999999 6764332 3467888
Q ss_pred EEEec
Q psy7978 54 VVIDC 58 (542)
Q Consensus 54 vVIDV 58 (542)
+||++
T Consensus 90 ~iIs~ 94 (266)
T PLN02688 90 LLVSV 94 (266)
T ss_pred EEEEe
Confidence 88865
No 137
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=59.48 E-value=8 Score=39.80 Aligned_cols=61 Identities=25% Similarity=0.277 Sum_probs=41.6
Q ss_pred CchHHHHHHHhCCC--e-eecC-----------------CCCCHHHHhhhCCEEEEeccCCCc---ee--cCcccCCeEE
Q psy7978 1 MWSSLQTFWLWVLA--N-PSMS-----------------KTKNIQDVVKSADILVVGIGQPEY---VK--GDWIKPGAVV 55 (542)
Q Consensus 1 vgkPLa~LL~~~~A--T-icHs-----------------~T~nl~~~~k~ADIVIsAvG~p~l---I~--~d~ik~GavV 55 (542)
||..++..|.+.+. . +... .+.++.+.++++|+||.|+..... +. ..++++|.+|
T Consensus 17 mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvViiavp~~~~~~v~~~l~~~l~~~~iv 96 (307)
T PRK07502 17 IGSSLARAIRRLGLAGEIVGADRSAETRARARELGLGDRVTTSAAEAVKGADLVILCVPVGASGAVAAEIAPHLKPGAIV 96 (307)
T ss_pred HHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCCCceecCCHHHHhcCCCEEEECCCHHHHHHHHHHHHhhCCCCCEE
Confidence 46778888877663 2 1111 123566778999999999987542 21 2567899999
Q ss_pred Eecccc
Q psy7978 56 IDCGIN 61 (542)
Q Consensus 56 IDVGin 61 (542)
+|+|..
T Consensus 97 ~dvgs~ 102 (307)
T PRK07502 97 TDVGSV 102 (307)
T ss_pred EeCccc
Confidence 999864
No 138
>PRK08655 prephenate dehydrogenase; Provisional
Probab=59.20 E-value=7.4 Score=42.67 Aligned_cols=61 Identities=16% Similarity=0.193 Sum_probs=43.1
Q ss_pred CchHHHHHHHhCCCe-eecCC----------------CCCHHHHhhhCCEEEEeccCCCc---ee--cCcccCCeEEEec
Q psy7978 1 MWSSLQTFWLWVLAN-PSMSK----------------TKNIQDVVKSADILVVGIGQPEY---VK--GDWIKPGAVVIDC 58 (542)
Q Consensus 1 vgkPLa~LL~~~~AT-icHs~----------------T~nl~~~~k~ADIVIsAvG~p~l---I~--~d~ik~GavVIDV 58 (542)
||..++..|.+.|.. ++..+ +.+..+.+.+||+||.|+..... +. ..++++|++|+|+
T Consensus 12 mG~slA~~L~~~G~~V~v~~r~~~~~~~~a~~~gv~~~~~~~e~~~~aDvVIlavp~~~~~~vl~~l~~~l~~~~iViDv 91 (437)
T PRK08655 12 LGKWFARFLKEKGFEVIVTGRDPKKGKEVAKELGVEYANDNIDAAKDADIVIISVPINVTEDVIKEVAPHVKEGSLLMDV 91 (437)
T ss_pred HHHHHHHHHHHCCCEEEEEECChHHHHHHHHHcCCeeccCHHHHhccCCEEEEecCHHHHHHHHHHHHhhCCCCCEEEEc
Confidence 478888999887765 22111 23566778899999999986542 22 2457899999999
Q ss_pred ccc
Q psy7978 59 GIN 61 (542)
Q Consensus 59 Gin 61 (542)
+..
T Consensus 92 sSv 94 (437)
T PRK08655 92 TSV 94 (437)
T ss_pred ccc
Confidence 964
No 139
>PLN02858 fructose-bisphosphate aldolase
Probab=58.87 E-value=11 Score=47.26 Aligned_cols=114 Identities=18% Similarity=0.177 Sum_probs=71.5
Q ss_pred CchHHHHHHHhCCCe-eecCC---------------CCCHHHHhhhCCEEEEeccCCCceec---------CcccCCeEE
Q psy7978 1 MWSSLQTFWLWVLAN-PSMSK---------------TKNIQDVVKSADILVVGIGQPEYVKG---------DWIKPGAVV 55 (542)
Q Consensus 1 vgkPLa~LL~~~~AT-icHs~---------------T~nl~~~~k~ADIVIsAvG~p~lI~~---------d~ik~GavV 55 (542)
||.|||.-|++.|.+ .+.-+ ..+..+..+++|+||+.+.-+.-+.. .-+++|.++
T Consensus 15 MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~~~Ga~~~~s~~e~a~~advVi~~l~~~~~v~~V~~g~~g~~~~l~~g~ii 94 (1378)
T PLN02858 15 LSFELASSLLRSGFKVQAFEISTPLMEKFCELGGHRCDSPAEAAKDAAALVVVLSHPDQVDDVFFGDEGAAKGLQKGAVI 94 (1378)
T ss_pred HHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEEcCChHHHHHHHhchhhHHhcCCCcCEE
Confidence 689999999998877 22222 23678889999999999988774332 235789999
Q ss_pred EeccccccCC---------Ccc----------------CCCCee---e-ecc-cccccccc----ceEeecCCCCcchhh
Q psy7978 56 IDCGINSVPD---------ASK----------------ASGQKL---V-GDV-QYAEAKNV----ASWITPVPGGVGPMT 101 (542)
Q Consensus 56 IDVGin~~~d---------~~~----------------~~~~kl---~-GDV-df~~v~~~----a~~iTPVPGGVGpmT 101 (542)
||.++..... ..+ ...++| + ||- .|+.+.+. +..+.-+-|.+|.-+
T Consensus 95 vd~STi~p~~~~~la~~l~~~g~~~~~lDaPVsGg~~~A~~G~L~imvGG~~~~~~~~~p~l~~~g~~i~~~~G~~G~g~ 174 (1378)
T PLN02858 95 LIRSTILPLQLQKLEKKLTERKEQIFLVDAYVSKGMSDLLNGKLMIIASGRSDAITRAQPFLSAMCQKLYTFEGEIGAGS 174 (1378)
T ss_pred EECCCCCHHHHHHHHHHHHhcCCceEEEEccCcCCHHHHhcCCeEEEEcCCHHHHHHHHHHHHHhcCceEEecCCCCHhH
Confidence 9999864210 001 001132 2 443 24444433 222333336789989
Q ss_pred HHHHHHhHHHHHH
Q psy7978 102 VAMLMNNTVLSAE 114 (542)
Q Consensus 102 vamL~~N~v~aa~ 114 (542)
.+-|+.|++.+..
T Consensus 175 ~~KL~nN~l~~~~ 187 (1378)
T PLN02858 175 KVKMVNELLEGIH 187 (1378)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999876543
No 140
>KOG1370|consensus
Probab=58.84 E-value=12 Score=40.17 Aligned_cols=62 Identities=16% Similarity=0.203 Sum_probs=48.3
Q ss_pred CchHHHHHHHhCCCe-eecCCC--------------CCHHHHhhhCCEEEEeccCCCceecCcc---cCCeEEEeccccc
Q psy7978 1 MWSSLQTFWLWVLAN-PSMSKT--------------KNIQDVVKSADILVVGIGQPEYVKGDWI---KPGAVVIDCGINS 62 (542)
Q Consensus 1 vgkPLa~LL~~~~AT-icHs~T--------------~nl~~~~k~ADIVIsAvG~p~lI~~d~i---k~GavVIDVGin~ 62 (542)
|||--|.-|...+|. ++-.-. ..+.|.++++||+|+++|..+.|..+++ |.+++|-++|-.-
T Consensus 225 VGKgCaqaLkg~g~~VivTEiDPI~ALQAaMeG~~V~tm~ea~~e~difVTtTGc~dii~~~H~~~mk~d~IvCN~Ghfd 304 (434)
T KOG1370|consen 225 VGKGCAQALKGFGARVIVTEIDPICALQAAMEGYEVTTLEEAIREVDIFVTTTGCKDIITGEHFDQMKNDAIVCNIGHFD 304 (434)
T ss_pred cchhHHHHHhhcCcEEEEeccCchHHHHHHhhccEeeeHHHhhhcCCEEEEccCCcchhhHHHHHhCcCCcEEecccccc
Confidence 567777778777777 221111 2588999999999999999999999887 7899999998653
No 141
>PRK06545 prephenate dehydrogenase; Validated
Probab=58.11 E-value=9.4 Score=40.52 Aligned_cols=62 Identities=21% Similarity=0.228 Sum_probs=43.1
Q ss_pred CchHHHHHHHhCCCe--e------------------ecCCCCCHHHHhhhCCEEEEeccCCCc---ee--cC-cccCCeE
Q psy7978 1 MWSSLQTFWLWVLAN--P------------------SMSKTKNIQDVVKSADILVVGIGQPEY---VK--GD-WIKPGAV 54 (542)
Q Consensus 1 vgkPLa~LL~~~~AT--i------------------cHs~T~nl~~~~k~ADIVIsAvG~p~l---I~--~d-~ik~Gav 54 (542)
||..++..|.+.|-. + +...+.++.+.+++||+||.|+....+ +. .. .++++++
T Consensus 11 iG~siA~~L~~~G~~v~i~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~aDlVilavP~~~~~~vl~~l~~~~l~~~~i 90 (359)
T PRK06545 11 IGGSLALAIKAAGPDVFIIGYDPSAAQLARALGFGVIDELAADLQRAAAEADLIVLAVPVDATAALLAELADLELKPGVI 90 (359)
T ss_pred HHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHhcCCCCcccccCHHHHhcCCCEEEEeCCHHHHHHHHHHHhhcCCCCCcE
Confidence 577888888877633 1 111234567778999999999987653 22 12 4789999
Q ss_pred EEeccccc
Q psy7978 55 VIDCGINS 62 (542)
Q Consensus 55 VIDVGin~ 62 (542)
|.|+|...
T Consensus 91 vtDv~SvK 98 (359)
T PRK06545 91 VTDVGSVK 98 (359)
T ss_pred EEeCcccc
Confidence 99999764
No 142
>PRK09287 6-phosphogluconate dehydrogenase; Validated
Probab=57.79 E-value=16 Score=40.71 Aligned_cols=62 Identities=16% Similarity=0.145 Sum_probs=44.9
Q ss_pred CchHHHHHHHhCCCe-eecCCC--------------------CCHHHHhhh---CCEEEEeccCCCcee------cCccc
Q psy7978 1 MWSSLQTFWLWVLAN-PSMSKT--------------------KNIQDVVKS---ADILVVGIGQPEYVK------GDWIK 50 (542)
Q Consensus 1 vgkPLa~LL~~~~AT-icHs~T--------------------~nl~~~~k~---ADIVIsAvG~p~lI~------~d~ik 50 (542)
||+|||.-|+++|-+ .++-+| .++++.+++ +|+||+.+....-++ ...+.
T Consensus 1 MG~~mA~nL~~~G~~V~v~nrt~~~~~~l~~~~g~~~g~~~~~s~~e~v~~l~~~~~Ii~mv~~g~~v~~Vi~~l~~~l~ 80 (459)
T PRK09287 1 MGKNLALNIASHGYTVAVYNRTPEKTDEFLAEEGKGKKIVPAYTLEEFVASLEKPRKILLMVKAGAPVDAVIEQLLPLLE 80 (459)
T ss_pred CcHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhCCCCCeEeeCCHHHHHhhCCCCCEEEEECCCchHHHHHHHHHHhcCC
Confidence 799999999999877 333332 245555654 799999988776433 23468
Q ss_pred CCeEEEeccccc
Q psy7978 51 PGAVVIDCGINS 62 (542)
Q Consensus 51 ~GavVIDVGin~ 62 (542)
+|.+|||.|++.
T Consensus 81 ~GdiiID~gn~~ 92 (459)
T PRK09287 81 KGDIIIDGGNSN 92 (459)
T ss_pred CCCEEEECCCCC
Confidence 999999999754
No 143
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=57.65 E-value=6.4 Score=40.04 Aligned_cols=61 Identities=15% Similarity=0.172 Sum_probs=41.4
Q ss_pred CchHHHHHHHhCCCe--eecCC----------------CCCHHHHhhhCCEEEEeccCCCce---e--cCcccCCeEEEe
Q psy7978 1 MWSSLQTFWLWVLAN--PSMSK----------------TKNIQDVVKSADILVVGIGQPEYV---K--GDWIKPGAVVID 57 (542)
Q Consensus 1 vgkPLa~LL~~~~AT--icHs~----------------T~nl~~~~k~ADIVIsAvG~p~lI---~--~d~ik~GavVID 57 (542)
||..++..|.+.|.. .+... +.+. +.+++||+||.|+...... + ...++++.+|+|
T Consensus 11 mG~sla~~L~~~g~~V~~~d~~~~~~~~a~~~g~~~~~~~~~-~~~~~aDlVilavp~~~~~~~~~~l~~~l~~~~ii~d 89 (279)
T PRK07417 11 IGGSLGLDLRSLGHTVYGVSRRESTCERAIERGLVDEASTDL-SLLKDCDLVILALPIGLLLPPSEQLIPALPPEAIVTD 89 (279)
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCcccccCCH-hHhcCCCEEEEcCCHHHHHHHHHHHHHhCCCCcEEEe
Confidence 578889999887765 22211 1123 4578999999999865432 1 245688999999
Q ss_pred ccccc
Q psy7978 58 CGINS 62 (542)
Q Consensus 58 VGin~ 62 (542)
+|...
T Consensus 90 ~~Svk 94 (279)
T PRK07417 90 VGSVK 94 (279)
T ss_pred CcchH
Confidence 99753
No 144
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=57.55 E-value=9.8 Score=39.22 Aligned_cols=61 Identities=15% Similarity=0.162 Sum_probs=41.4
Q ss_pred CchHHHHHHHhCCCe-eecCCC---------------CCHHH---HhhhCCEEEEeccCCCcee------cCcccCCeEE
Q psy7978 1 MWSSLQTFWLWVLAN-PSMSKT---------------KNIQD---VVKSADILVVGIGQPEYVK------GDWIKPGAVV 55 (542)
Q Consensus 1 vgkPLa~LL~~~~AT-icHs~T---------------~nl~~---~~k~ADIVIsAvG~p~lI~------~d~ik~GavV 55 (542)
||.+|+..|.+.|-+ +...++ .++.+ .+.++|+||+++... .++ ...+++|.+|
T Consensus 11 mG~~la~~L~~~g~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~~~~~dvIi~~vp~~-~~~~v~~~l~~~l~~g~iv 89 (298)
T TIGR00872 11 MGANIVRRLAKRGHDCVGYDHDQDAVKAMKEDRTTGVANLRELSQRLSAPRVVWVMVPHG-IVDAVLEELAPTLEKGDIV 89 (298)
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCcccCCHHHHHhhcCCCCEEEEEcCch-HHHHHHHHHHhhCCCCCEE
Confidence 588999999888766 333222 13333 335689999999876 322 2357899999
Q ss_pred Eeccccc
Q psy7978 56 IDCGINS 62 (542)
Q Consensus 56 IDVGin~ 62 (542)
||.+...
T Consensus 90 id~st~~ 96 (298)
T TIGR00872 90 IDGGNSY 96 (298)
T ss_pred EECCCCC
Confidence 9998764
No 145
>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....
Probab=57.12 E-value=10 Score=33.34 Aligned_cols=56 Identities=21% Similarity=0.300 Sum_probs=38.6
Q ss_pred HHHHHHHhCCCe-eec-----------C-------CCCCHHHHhhhCCEEEEeccCCCceecCc------ccCCeEEEec
Q psy7978 4 SLQTFWLWVLAN-PSM-----------S-------KTKNIQDVVKSADILVVGIGQPEYVKGDW------IKPGAVVIDC 58 (542)
Q Consensus 4 PLa~LL~~~~AT-icH-----------s-------~T~nl~~~~k~ADIVIsAvG~p~lI~~d~------ik~GavVIDV 58 (542)
.+...|.++|++ .+| . .+.++.+.++.||.||.++..+.|-.-+| ++++.+|||+
T Consensus 21 ~l~~~L~~~g~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vvl~t~h~~f~~l~~~~~~~~~~~~~~iiD~ 100 (106)
T PF03720_consen 21 ELIEELKERGAEVSVYDPYVDEEEIKELGKLEGVEVCDDLEEALKGADAVVLATDHDEFRELDWEEIAKLMRKPPVIIDG 100 (106)
T ss_dssp HHHHHHHHTT-EEEEE-TTSHHHHHHHHCHHHCEEEESSHHHHHTTESEEEESS--GGGGCCGHHHHHHHSCSSEEEEES
T ss_pred HHHHHHHHCCCEEEEECCccChHHHHhhCCccceEEecCHHHHhcCCCEEEEEecCHHHhccCHHHHHHhcCCCCEEEEC
Confidence 466778888887 221 0 13478899999999999999999966332 3689999996
Q ss_pred c
Q psy7978 59 G 59 (542)
Q Consensus 59 G 59 (542)
=
T Consensus 101 ~ 101 (106)
T PF03720_consen 101 R 101 (106)
T ss_dssp S
T ss_pred c
Confidence 3
No 146
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=56.60 E-value=51 Score=32.98 Aligned_cols=121 Identities=18% Similarity=0.278 Sum_probs=73.3
Q ss_pred cccccCcccc--------------CCCCCcE-EEeC----CCCCCHHHHHHHHH---HHHHcCCCeEEEccccccCchhH
Q psy7978 343 FLLYCKLDSQ--------------YLEHPPV-TMLI----YYTYTPAEWEIIRK---AAKQAGAHDAVVCENWAKGGAGA 400 (542)
Q Consensus 343 ~~~~~NL~~H--------------~fGvpvV-AiN~----F~tDT~~Ei~~i~~---~~~~~G~~~~~v~~~~a~GG~Ga 400 (542)
+|||+||... ...+|+. -|.- | .-|++|++..++ .++++|+. -.|-..-.+.|.=-
T Consensus 24 iELc~~l~~GGlTPS~g~i~~~~~~~~ipv~vMIRpr~gdF-~Ys~~E~~~M~~dI~~~~~~Gad-G~VfG~L~~dg~iD 101 (201)
T PF03932_consen 24 IELCSNLEVGGLTPSLGLIRQAREAVDIPVHVMIRPRGGDF-VYSDEEIEIMKEDIRMLRELGAD-GFVFGALTEDGEID 101 (201)
T ss_dssp EEEEBTGGGT-B---HHHHHHHHHHTTSEEEEE--SSSS-S----HHHHHHHHHHHHHHHHTT-S-EEEE--BETTSSB-
T ss_pred EEECCCccCCCcCcCHHHHHHHHhhcCCceEEEECCCCCCc-cCCHHHHHHHHHHHHHHHHcCCC-eeEEEeECCCCCcC
Confidence 6667777665 4788888 7763 3 358999888876 67789996 45555555666656
Q ss_pred HHHHHHHHHHhcc-CCCCcccccCCCCCHHHHHHHHHHHHhcCCceecC------hHHHHHHHHHHHcCCCCCce
Q psy7978 401 ADLADAVIKATEL-KDKQFKYLYDIHDPLLTKIQTVAREMYGVHKVDCP------QPVLEKLQKLERLGYGRLTV 468 (542)
Q Consensus 401 ~~LA~~Vv~a~~~-~~~~f~~lY~~~~~l~eKI~~IA~~IYGA~~V~~s------~~A~~~l~~~e~~G~~~lPV 468 (542)
.+.-+.+++++.. +- .||-.+|......+-++.+.. ||-+.|==| .+-.+.|+++-+.--+++-|
T Consensus 102 ~~~~~~Li~~a~~~~~-tFHRAfD~~~d~~~al~~L~~--lG~~rVLTSGg~~~a~~g~~~L~~lv~~a~~~i~I 173 (201)
T PF03932_consen 102 EEALEELIEAAGGMPV-TFHRAFDEVPDPEEALEQLIE--LGFDRVLTSGGAPTALEGIENLKELVEQAKGRIEI 173 (201)
T ss_dssp HHHHHHHHHHHTTSEE-EE-GGGGGSSTHHHHHHHHHH--HT-SEEEESTTSSSTTTCHHHHHHHHHHHTTSSEE
T ss_pred HHHHHHHHHhcCCCeE-EEeCcHHHhCCHHHHHHHHHh--cCCCEEECCCCCCCHHHHHHHHHHHHHHcCCCcEE
Confidence 6677888888853 22 488899988888999999887 487766221 22345666654432234433
No 147
>KOG0409|consensus
Probab=56.50 E-value=9.8 Score=40.55 Aligned_cols=61 Identities=21% Similarity=0.299 Sum_probs=43.3
Q ss_pred CchHHHHHHHhCCCe-eecCCCC---------------CHHHHhhhCCEEEEeccCCCceecCc---------ccCCeEE
Q psy7978 1 MWSSLQTFWLWVLAN-PSMSKTK---------------NIQDVVKSADILVVGIGQPEYVKGDW---------IKPGAVV 55 (542)
Q Consensus 1 vgkPLa~LL~~~~AT-icHs~T~---------------nl~~~~k~ADIVIsAvG~p~lI~~d~---------ik~GavV 55 (542)
||.+++.-|++.|-+ +++-+|+ ...|.++.+|+||+.++.|.-++.-+ +++|...
T Consensus 46 MG~~M~~nLik~G~kVtV~dr~~~k~~~f~~~Ga~v~~sPaeVae~sDvvitmv~~~~~v~~v~~g~~Gvl~g~~~g~~~ 125 (327)
T KOG0409|consen 46 MGSAMVSNLIKAGYKVTVYDRTKDKCKEFQEAGARVANSPAEVAEDSDVVITMVPNPKDVKDVLLGKSGVLSGIRPGKKA 125 (327)
T ss_pred chHHHHHHHHHcCCEEEEEeCcHHHHHHHHHhchhhhCCHHHHHhhcCEEEEEcCChHhhHHHhcCCCcceeeccCCCce
Confidence 688999999988888 5554442 36788999999999999998544322 2355555
Q ss_pred -Eecccc
Q psy7978 56 -IDCGIN 61 (542)
Q Consensus 56 -IDVGin 61 (542)
||..+.
T Consensus 126 ~vDmSTi 132 (327)
T KOG0409|consen 126 TVDMSTI 132 (327)
T ss_pred EEecccc
Confidence 676553
No 148
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=55.82 E-value=13 Score=37.56 Aligned_cols=60 Identities=20% Similarity=0.162 Sum_probs=43.0
Q ss_pred CchHHHHHHHhCCCeeec--CCCC-----------------CHHHHhhhCCEEEEeccCCCcee-----cCcccCCeEEE
Q psy7978 1 MWSSLQTFWLWVLANPSM--SKTK-----------------NIQDVVKSADILVVGIGQPEYVK-----GDWIKPGAVVI 56 (542)
Q Consensus 1 vgkPLa~LL~~~~ATicH--s~T~-----------------nl~~~~k~ADIVIsAvG~p~lI~-----~d~ik~GavVI 56 (542)
||.-|+..|.+.|.++.+ |+.+ ..++.++.|||||.|+.-..... .+++. |.+||
T Consensus 12 iG~alA~~~a~ag~eV~igs~r~~~~~~a~a~~l~~~i~~~~~~dA~~~aDVVvLAVP~~a~~~v~~~l~~~~~-~KIvI 90 (211)
T COG2085 12 IGSALALRLAKAGHEVIIGSSRGPKALAAAAAALGPLITGGSNEDAAALADVVVLAVPFEAIPDVLAELRDALG-GKIVI 90 (211)
T ss_pred HHHHHHHHHHhCCCeEEEecCCChhHHHHHHHhhccccccCChHHHHhcCCEEEEeccHHHHHhHHHHHHHHhC-CeEEE
Confidence 577889999998888333 3322 34578899999999999877633 23444 89999
Q ss_pred ecccc
Q psy7978 57 DCGIN 61 (542)
Q Consensus 57 DVGin 61 (542)
|+..-
T Consensus 91 D~tnp 95 (211)
T COG2085 91 DATNP 95 (211)
T ss_pred ecCCC
Confidence 98743
No 149
>PLN02858 fructose-bisphosphate aldolase
Probab=54.59 E-value=12 Score=47.08 Aligned_cols=62 Identities=16% Similarity=0.123 Sum_probs=45.6
Q ss_pred CchHHHHHHHhCCCe-eecCC---------------CCCHHHHhhhCCEEEEeccCCCcee---------cCcccCCeEE
Q psy7978 1 MWSSLQTFWLWVLAN-PSMSK---------------TKNIQDVVKSADILVVGIGQPEYVK---------GDWIKPGAVV 55 (542)
Q Consensus 1 vgkPLa~LL~~~~AT-icHs~---------------T~nl~~~~k~ADIVIsAvG~p~lI~---------~d~ik~GavV 55 (542)
||.||+.-|++.|.+ .++.+ ..+..+.++++|+||+++.-|.-++ .+.+++|.+|
T Consensus 335 MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~Ga~~~~s~~e~~~~aDvVi~~V~~~~~v~~Vl~g~~g~~~~l~~g~iv 414 (1378)
T PLN02858 335 MGFGMASHLLKSNFSVCGYDVYKPTLVRFENAGGLAGNSPAEVAKDVDVLVIMVANEVQAENVLFGDLGAVSALPAGASI 414 (1378)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEecCChHHHHHHHhchhhHHhcCCCCCEE
Confidence 689999999998876 22222 2367788999999999999766321 1235899999
Q ss_pred Eeccccc
Q psy7978 56 IDCGINS 62 (542)
Q Consensus 56 IDVGin~ 62 (542)
||.++..
T Consensus 415 Vd~STvs 421 (1378)
T PLN02858 415 VLSSTVS 421 (1378)
T ss_pred EECCCCC
Confidence 9998853
No 150
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=54.18 E-value=71 Score=32.89 Aligned_cols=152 Identities=16% Similarity=0.218 Sum_probs=91.9
Q ss_pred eehhhhhc--CCCCCCCCCCCCCcc------cCccCHHHHhccCCcc----cccCccccCCCCCcE---EEeCCCCCCHH
Q psy7978 306 TVRALKMH--GGGPSVVSGQPLKPE------YTENTRAVLRGEDSFL----LYCKLDSQYLEHPPV---TMLIYYTYTPA 370 (542)
Q Consensus 306 TvRALK~H--GG~~~~~~g~p~~~~------l~~en~~al~~G~~~~----~~~NL~~H~fGvpvV---AiN~F~tDT~~ 370 (542)
|++.++.- +|+.-...|-|..+- +.+.+..||+.|..+. ....+.+..+.+|+| -.|-+..--
T Consensus 28 ~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~~AL~~G~~~~~~~~~~~~~r~~~~~~p~vlm~Y~N~i~~~G-- 105 (258)
T PRK13111 28 SLEIIKALVEAGADIIELGIPFSDPVADGPVIQAASLRALAAGVTLADVFELVREIREKDPTIPIVLMTYYNPIFQYG-- 105 (258)
T ss_pred HHHHHHHHHHCCCCEEEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEecccHHhhcC--
Confidence 55656533 777766667666433 3456788999994431 222222124678966 567654322
Q ss_pred HHHHHHHHHHHcCCCeEEEccccccCchhHHHHHHHHHHHhccCCCCcccccCCCCCHHHHHHHHHHH----Hh-----c
Q psy7978 371 EWEIIRKAAKQAGAHDAVVCENWAKGGAGAADLADAVIKATELKDKQFKYLYDIHDPLLTKIQTVARE----MY-----G 441 (542)
Q Consensus 371 Ei~~i~~~~~~~G~~~~~v~~~~a~GG~Ga~~LA~~Vv~a~~~~~~~f~~lY~~~~~l~eKI~~IA~~----IY-----G 441 (542)
++.+.+.|+++|+..+.+-+. -.+-++.+++.|.+..-++=++...+.| ++.|+.|++. || |
T Consensus 106 -~e~f~~~~~~aGvdGviipDL-------p~ee~~~~~~~~~~~gl~~I~lvap~t~-~eri~~i~~~s~gfIY~vs~~G 176 (258)
T PRK13111 106 -VERFAADAAEAGVDGLIIPDL-------PPEEAEELRAAAKKHGLDLIFLVAPTTT-DERLKKIASHASGFVYYVSRAG 176 (258)
T ss_pred -HHHHHHHHHHcCCcEEEECCC-------CHHHHHHHHHHHHHcCCcEEEEeCCCCC-HHHHHHHHHhCCCcEEEEeCCC
Confidence 344567788999975555443 1355667777776532123344455554 5677777764 33 4
Q ss_pred CCce--ecChHHHHHHHHHHHcCCCCCceeE
Q psy7978 442 VHKV--DCPQPVLEKLQKLERLGYGRLTVCM 470 (542)
Q Consensus 442 A~~V--~~s~~A~~~l~~~e~~G~~~lPVCm 470 (542)
..+. .+++...+.++++.+. .+.|||+
T Consensus 177 vTG~~~~~~~~~~~~i~~vk~~--~~~pv~v 205 (258)
T PRK13111 177 VTGARSADAADLAELVARLKAH--TDLPVAV 205 (258)
T ss_pred CCCcccCCCccHHHHHHHHHhc--CCCcEEE
Confidence 4555 5667788888999884 4789987
No 151
>PLN02712 arogenate dehydrogenase
Probab=53.02 E-value=14 Score=43.03 Aligned_cols=61 Identities=10% Similarity=0.077 Sum_probs=41.5
Q ss_pred CchHHHHHHHhCCCe-eecCCC--------------CCHHHHhh-hCCEEEEeccCCCc---ee---cCcccCCeEEEec
Q psy7978 1 MWSSLQTFWLWVLAN-PSMSKT--------------KNIQDVVK-SADILVVGIGQPEY---VK---GDWIKPGAVVIDC 58 (542)
Q Consensus 1 vgkPLa~LL~~~~AT-icHs~T--------------~nl~~~~k-~ADIVIsAvG~p~l---I~---~d~ik~GavVIDV 58 (542)
||..++..|.+.|.+ +...++ .++.+.++ .+|+||.|+..... +. ...+|+|++|+||
T Consensus 380 mG~slA~~L~~~G~~V~~~dr~~~~~~a~~~Gv~~~~~~~el~~~~aDvVILavP~~~~~~vi~~l~~~~lk~g~ivvDv 459 (667)
T PLN02712 380 FGQFLAKTMVKQGHTVLAYSRSDYSDEAQKLGVSYFSDADDLCEEHPEVILLCTSILSTEKVLKSLPFQRLKRSTLFVDV 459 (667)
T ss_pred HHHHHHHHHHHCcCEEEEEECChHHHHHHHcCCeEeCCHHHHHhcCCCEEEECCChHHHHHHHHHHHHhcCCCCcEEEEC
Confidence 578899989888766 222222 24555565 58999999885432 22 2247899999999
Q ss_pred ccc
Q psy7978 59 GIN 61 (542)
Q Consensus 59 Gin 61 (542)
|..
T Consensus 460 ~Sv 462 (667)
T PLN02712 460 LSV 462 (667)
T ss_pred CCc
Confidence 876
No 152
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=52.28 E-value=24 Score=37.90 Aligned_cols=61 Identities=8% Similarity=0.047 Sum_probs=40.0
Q ss_pred chHHHHHHHhCCCe--eecCCCC------CHH----HHhhhCCEEEEe---ccCCCc-eecCcccCC--eEEEeccccc
Q psy7978 2 WSSLQTFWLWVLAN--PSMSKTK------NIQ----DVVKSADILVVG---IGQPEY-VKGDWIKPG--AVVIDCGINS 62 (542)
Q Consensus 2 gkPLa~LL~~~~AT--icHs~T~------nl~----~~~k~ADIVIsA---vG~p~l-I~~d~ik~G--avVIDVGin~ 62 (542)
|+=.+..|.++|+. ++-.+|. ++. ++..++||||+| ++.|.. ++.+++++- .++||...-+
T Consensus 186 ~~l~a~~L~~~g~~~i~v~nRt~~~~~~~~~~~~~~~~~~~~DvVIs~t~~Tas~~p~i~~~~~~~~~~r~~iDLAvPR 264 (338)
T PRK00676 186 NRKVAYYLQRQGYSRITFCSRQQLTLPYRTVVREELSFQDPYDVIFFGSSESAYAFPHLSWESLADIPDRIVFDFNVPR 264 (338)
T ss_pred HHHHHHHHHHcCCCEEEEEcCCccccchhhhhhhhhhcccCCCEEEEcCCcCCCCCceeeHHHHhhccCcEEEEecCCC
Confidence 44456677788866 3333442 222 445699999997 778876 666666532 3899999876
No 153
>PLN02256 arogenate dehydrogenase
Probab=48.07 E-value=22 Score=37.17 Aligned_cols=61 Identities=10% Similarity=0.082 Sum_probs=39.7
Q ss_pred CchHHHHHHHhCCCe--eec-CC------------CCCHHHHh-hhCCEEEEeccCCCc---ee---cCcccCCeEEEec
Q psy7978 1 MWSSLQTFWLWVLAN--PSM-SK------------TKNIQDVV-KSADILVVGIGQPEY---VK---GDWIKPGAVVIDC 58 (542)
Q Consensus 1 vgkPLa~LL~~~~AT--icH-s~------------T~nl~~~~-k~ADIVIsAvG~p~l---I~---~d~ik~GavVIDV 58 (542)
||.-++..|.+.|.+ ++. +. ..++.+.+ ..+|+||.|+....+ ++ ...++++++|+||
T Consensus 47 mG~slA~~L~~~G~~V~~~d~~~~~~~a~~~gv~~~~~~~e~~~~~aDvVilavp~~~~~~vl~~l~~~~l~~~~iviDv 126 (304)
T PLN02256 47 FGQFLAKTFVKQGHTVLATSRSDYSDIAAELGVSFFRDPDDFCEEHPDVVLLCTSILSTEAVLRSLPLQRLKRSTLFVDV 126 (304)
T ss_pred HHHHHHHHHHhCCCEEEEEECccHHHHHHHcCCeeeCCHHHHhhCCCCEEEEecCHHHHHHHHHhhhhhccCCCCEEEec
Confidence 467788888877755 221 11 12455555 469999999985543 32 2236889999999
Q ss_pred ccc
Q psy7978 59 GIN 61 (542)
Q Consensus 59 Gin 61 (542)
+..
T Consensus 127 ~Sv 129 (304)
T PLN02256 127 LSV 129 (304)
T ss_pred CCc
Confidence 973
No 154
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=47.41 E-value=20 Score=39.96 Aligned_cols=62 Identities=16% Similarity=0.148 Sum_probs=41.9
Q ss_pred CchHHHHHHHhCCCe-eecCCC--------------------CCHHHHh---hhCCEEEEeccCCCc----ee--cCccc
Q psy7978 1 MWSSLQTFWLWVLAN-PSMSKT--------------------KNIQDVV---KSADILVVGIGQPEY----VK--GDWIK 50 (542)
Q Consensus 1 vgkPLa~LL~~~~AT-icHs~T--------------------~nl~~~~---k~ADIVIsAvG~p~l----I~--~d~ik 50 (542)
||.+||.-|+++|-+ +++.+| .++++.+ +++|+||..+.-..- +. ...++
T Consensus 10 MG~~mA~nL~~~G~~V~v~drt~~~~~~l~~~~~~g~~~~~~~s~~e~v~~l~~~dvIil~v~~~~~v~~Vi~~l~~~L~ 89 (467)
T TIGR00873 10 MGSNLALNMADHGFTVSVYNRTPEKTDEFLAEHAKGKKIVGAYSIEEFVQSLERPRKIMLMVKAGAPVDAVINQLLPLLE 89 (467)
T ss_pred HHHHHHHHHHhcCCeEEEEeCCHHHHHHHHhhccCCCCceecCCHHHHHhhcCCCCEEEEECCCcHHHHHHHHHHHhhCC
Confidence 689999999998877 333332 1344444 357999998766432 21 24578
Q ss_pred CCeEEEeccccc
Q psy7978 51 PGAVVIDCGINS 62 (542)
Q Consensus 51 ~GavVIDVGin~ 62 (542)
+|.+|||.|...
T Consensus 90 ~g~iIID~gns~ 101 (467)
T TIGR00873 90 KGDIIIDGGNSH 101 (467)
T ss_pred CCCEEEECCCcC
Confidence 999999999754
No 155
>COG3414 SgaB Phosphotransferase system, galactitol-specific IIB component [Carbohydrate transport and metabolism]
Probab=46.26 E-value=6.3 Score=34.78 Aligned_cols=52 Identities=25% Similarity=0.402 Sum_probs=41.3
Q ss_pred CHHHHHHHHHHHHhcCCceecChHHHHHHHHHHHcCCCCCceeEEccCCCCCCCCC
Q psy7978 427 PLLTKIQTVAREMYGVHKVDCPQPVLEKLQKLERLGYGRLTVCMAKTALSLSGDPT 482 (542)
Q Consensus 427 ~l~eKI~~IA~~IYGA~~V~~s~~A~~~l~~~e~~G~~~lPVCmAKTqySlS~dp~ 482 (542)
=++.|||+++++ +|-+ ++.+..+..+.+.+.+ | .++=||.+|+.++|+++|.
T Consensus 17 ~ik~kve~~l~~-~gi~-~~~~~~~v~~~~~~~~-~-aDiiv~s~~l~~~~~~~~~ 68 (93)
T COG3414 17 MIKMKVEEVLKE-LGID-VDVEQCAVDEIKALTD-G-ADIIVTSTKLADEFEDIPK 68 (93)
T ss_pred HHHHHHHHHHHH-cCCC-ceeeeEEecccccCCC-c-ccEEEEehHhhhhcCcCCC
Confidence 378899999997 7766 6777777766666555 3 4899999999999999987
No 156
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=45.21 E-value=45 Score=39.59 Aligned_cols=82 Identities=17% Similarity=0.168 Sum_probs=51.0
Q ss_pred CCCCCcE-EEeCCCCCCHHHHH-HHHHHHHHcCCCeEEEccccccCchhHHHHHHHHHHHhccCCCCcccccCCCCCHHH
Q psy7978 353 YLEHPPV-TMLIYYTYTPAEWE-IIRKAAKQAGAHDAVVCENWAKGGAGAADLADAVIKATELKDKQFKYLYDIHDPLLT 430 (542)
Q Consensus 353 ~fGvpvV-AiN~F~tDT~~Ei~-~i~~~~~~~G~~~~~v~~~~a~GG~Ga~~LA~~Vv~a~~~~~~~f~~lY~~~~~l~e 430 (542)
+.|+|+| ++|+-......+++ .++++.++.|+. ++. .-+.-|+|-.+|.+++.+..+.+. .-+.-|+ ..+++
T Consensus 110 e~giPvIvVlNK~Dl~~~~~i~id~~~L~~~LG~p-Vvp--iSA~~g~GIdeL~~~I~~~~~~~~-~~~~~yp--~~le~ 183 (772)
T PRK09554 110 ELGIPCIVALNMLDIAEKQNIRIDIDALSARLGCP-VIP--LVSTRGRGIEALKLAIDRHQANEN-VELVHYP--QPLLN 183 (772)
T ss_pred HcCCCEEEEEEchhhhhccCcHHHHHHHHHHhCCC-EEE--EEeecCCCHHHHHHHHHHhhhccC-CcccCCC--HHHHH
Confidence 4689999 99986543222221 234566678985 433 334567888888888887654322 1233455 35888
Q ss_pred HHHHHHHHHh
Q psy7978 431 KIQTVAREMY 440 (542)
Q Consensus 431 KI~~IA~~IY 440 (542)
.|+.+...+-
T Consensus 184 ~I~~l~~~L~ 193 (772)
T PRK09554 184 EADSLAKVMP 193 (772)
T ss_pred HHHHHHHHhh
Confidence 8888876653
No 157
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=45.12 E-value=18 Score=35.45 Aligned_cols=58 Identities=17% Similarity=0.111 Sum_probs=37.8
Q ss_pred CchHHHHHHHhCCCe-eecCCC--------------------------CCHHHHhhhCCEEEEeccCCCcee-----cCc
Q psy7978 1 MWSSLQTFWLWVLAN-PSMSKT--------------------------KNIQDVVKSADILVVGIGQPEYVK-----GDW 48 (542)
Q Consensus 1 vgkPLa~LL~~~~AT-icHs~T--------------------------~nl~~~~k~ADIVIsAvG~p~lI~-----~d~ 48 (542)
||..++..|.+.|.. ++.+++ .+..+.++++|+||.|+....+-. ...
T Consensus 12 mG~ala~~L~~~G~~V~v~~r~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~ea~~~aDvVilavp~~~~~~~l~~l~~~ 91 (219)
T TIGR01915 12 QGKGLALRLAKAGNKIIIGSRDLEKAEEAAAKALEELGHGGSDIKVTGADNAEAAKRADVVILAVPWDHVLKTLESLRDE 91 (219)
T ss_pred HHHHHHHHHHhCCCEEEEEEcCHHHHHHHHHHHHhhccccCCCceEEEeChHHHHhcCCEEEEECCHHHHHHHHHHHHHh
Confidence 467888888877755 222221 244567889999999998776522 122
Q ss_pred ccCCeEEEecc
Q psy7978 49 IKPGAVVIDCG 59 (542)
Q Consensus 49 ik~GavVIDVG 59 (542)
++ +.+|||+-
T Consensus 92 l~-~~vvI~~~ 101 (219)
T TIGR01915 92 LS-GKLVISPV 101 (219)
T ss_pred cc-CCEEEEec
Confidence 33 58999983
No 158
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=44.62 E-value=31 Score=38.45 Aligned_cols=62 Identities=16% Similarity=0.146 Sum_probs=42.6
Q ss_pred CchHHHHHHHhCCCe-eecCC---------------------CCCHHHHhh---hCCEEEEeccCCCcee------cCcc
Q psy7978 1 MWSSLQTFWLWVLAN-PSMSK---------------------TKNIQDVVK---SADILVVGIGQPEYVK------GDWI 49 (542)
Q Consensus 1 vgkPLa~LL~~~~AT-icHs~---------------------T~nl~~~~k---~ADIVIsAvG~p~lI~------~d~i 49 (542)
||.+||.-|+++|-+ .++-+ +.++++.++ ++|+||..+--+..++ ...+
T Consensus 12 MG~~lA~nL~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~i~~~~s~~e~v~~l~~~d~Iil~v~~~~~v~~vi~~l~~~L 91 (470)
T PTZ00142 12 MGQNLALNIASRGFKISVYNRTYEKTEEFVKKAKEGNTRVKGYHTLEELVNSLKKPRKVILLIKAGEAVDETIDNLLPLL 91 (470)
T ss_pred HHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhhhhcCCcceecCCHHHHHhcCCCCCEEEEEeCChHHHHHHHHHHHhhC
Confidence 689999999988766 22111 345667776 4898887765554322 2457
Q ss_pred cCCeEEEeccccc
Q psy7978 50 KPGAVVIDCGINS 62 (542)
Q Consensus 50 k~GavVIDVGin~ 62 (542)
++|.+|||.|...
T Consensus 92 ~~g~iIID~gn~~ 104 (470)
T PTZ00142 92 EKGDIIIDGGNEW 104 (470)
T ss_pred CCCCEEEECCCCC
Confidence 8999999999764
No 159
>PRK03670 competence damage-inducible protein A; Provisional
Probab=42.92 E-value=1.3e+02 Score=30.86 Aligned_cols=42 Identities=12% Similarity=-0.005 Sum_probs=22.2
Q ss_pred CCCCCcEEEeCCCCCCHHHHHHHHHHHHHcCCCeEEEccccccCchhH
Q psy7978 353 YLEHPPVTMLIYYTYTPAEWEIIRKAAKQAGAHDAVVCENWAKGGAGA 400 (542)
Q Consensus 353 ~fGvpvVAiN~F~tDT~~Ei~~i~~~~~~~G~~~~~v~~~~a~GG~Ga 400 (542)
.+|+.+..+=. ..|..++|....+.+.+... ++++++ ||.|.
T Consensus 31 ~~G~~v~~~~i-V~Dd~~~I~~~l~~a~~~~~-DlVItt----GGlGp 72 (252)
T PRK03670 31 EKGYWVRRITT-VGDDVEEIKSVVLEILSRKP-EVLVIS----GGLGP 72 (252)
T ss_pred HCCCEEEEEEE-cCCCHHHHHHHHHHHhhCCC-CEEEEC----CCccC
Confidence 46666542111 36667776654444433344 466665 77763
No 160
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=41.99 E-value=16 Score=37.80 Aligned_cols=37 Identities=16% Similarity=0.213 Sum_probs=31.5
Q ss_pred CCHHHHhh--hCCEEEEeccCCCceecCcccC------CeEEEec
Q psy7978 22 KNIQDVVK--SADILVVGIGQPEYVKGDWIKP------GAVVIDC 58 (542)
Q Consensus 22 ~nl~~~~k--~ADIVIsAvG~p~lI~~d~ik~------GavVIDV 58 (542)
.+|.+.++ ++|++|-..|+|+.+++|+|+. ..+|+=.
T Consensus 96 ~~L~eav~~~kptvlIG~S~~~g~ft~evv~~Ma~~~~~PIIFaL 140 (254)
T cd00762 96 GDLEDAVEAAKPDFLIGVSRVGGAFTPEVIRAXAEINERPVIFAL 140 (254)
T ss_pred CCHHHHHHhhCCCEEEEeCCCCCCCCHHHHHHHhhcCCCCEEEEC
Confidence 48999999 9999999999999999999974 4566543
No 161
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=41.21 E-value=24 Score=35.92 Aligned_cols=41 Identities=10% Similarity=0.189 Sum_probs=28.7
Q ss_pred CCCHHHHhhhCCEEEEeccCCCcee-------cCcccCCeEE-Eecccc
Q psy7978 21 TKNIQDVVKSADILVVGIGQPEYVK-------GDWIKPGAVV-IDCGIN 61 (542)
Q Consensus 21 T~nl~~~~k~ADIVIsAvG~p~lI~-------~d~ik~GavV-IDVGin 61 (542)
|.++.+.+++||+||.|+...--++ .+.+++++++ +|..+-
T Consensus 72 ~~~~~~~~~~aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~~~tSt~ 120 (288)
T PRK09260 72 SLDLKAAVADADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTSTM 120 (288)
T ss_pred eCcHHHhhcCCCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEEEcCCCC
Confidence 4567788999999999998774222 2456888866 565543
No 162
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=40.78 E-value=58 Score=30.93 Aligned_cols=52 Identities=25% Similarity=0.266 Sum_probs=41.4
Q ss_pred CCCCcE-EEeCCCCC-CHHHHHHHHHHHHHcCCCeEEEccccccCchhHHHHHHHH
Q psy7978 354 LEHPPV-TMLIYYTY-TPAEWEIIRKAAKQAGAHDAVVCENWAKGGAGAADLADAV 407 (542)
Q Consensus 354 fGvpvV-AiN~F~tD-T~~Ei~~i~~~~~~~G~~~~~v~~~~a~GG~Ga~~LA~~V 407 (542)
|..||+ .|++-.-+ +++.++..+++.+.+|+... -..=+.=|+|-.+|.+.+
T Consensus 88 f~~pvIGVITK~Dl~~~~~~i~~a~~~L~~aG~~~i--f~vS~~~~eGi~eL~~~L 141 (143)
T PF10662_consen 88 FNKPVIGVITKIDLPSDDANIERAKKWLKNAGVKEI--FEVSAVTGEGIEELKDYL 141 (143)
T ss_pred cCCCEEEEEECccCccchhhHHHHHHHHHHcCCCCe--EEEECCCCcCHHHHHHHH
Confidence 889999 99987666 68889999999999999743 444456788888887643
No 163
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=39.93 E-value=27 Score=36.19 Aligned_cols=39 Identities=13% Similarity=0.210 Sum_probs=29.4
Q ss_pred CCHHHHhhhCCEEEEeccCCCceec-CcccCCeEEEeccc
Q psy7978 22 KNIQDVVKSADILVVGIGQPEYVKG-DWIKPGAVVIDCGI 60 (542)
Q Consensus 22 ~nl~~~~k~ADIVIsAvG~p~lI~~-d~ik~GavVIDVGi 60 (542)
.++.+.++.+|+||.++....+-.- +.++++.++|++..
T Consensus 66 ~~~~e~~~~aD~Vi~~v~~~~~~~v~~~l~~~~~vi~~~~ 105 (328)
T PRK14618 66 ADPEEALAGADFAVVAVPSKALRETLAGLPRALGYVSCAK 105 (328)
T ss_pred CCHHHHHcCCCEEEEECchHHHHHHHHhcCcCCEEEEEee
Confidence 3677778899999999988865221 44688899998854
No 164
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=39.70 E-value=20 Score=36.60 Aligned_cols=96 Identities=13% Similarity=0.153 Sum_probs=57.1
Q ss_pred chHHHHHHHhCCCe--eecCCCC--------------------CHHHHhhhCCEEEEeccCCC-------ceecCcccCC
Q psy7978 2 WSSLQTFWLWVLAN--PSMSKTK--------------------NIQDVVKSADILVVGIGQPE-------YVKGDWIKPG 52 (542)
Q Consensus 2 gkPLa~LL~~~~AT--icHs~T~--------------------nl~~~~k~ADIVIsAvG~p~-------lI~~d~ik~G 52 (542)
|+-++..|...|+. .+.++|. ++.+.+..+||||.|+...- -+..++++++
T Consensus 135 a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~DivInaTp~g~~~~~~~~~~~~~~l~~~ 214 (278)
T PRK00258 135 ARAVILPLLDLGVAEITIVNRTVERAEELAKLFGALGKAELDLELQEELADFDLIINATSAGMSGELPLPPLPLSLLRPG 214 (278)
T ss_pred HHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhccceeecccchhccccCCEEEECCcCCCCCCCCCCCCCHHHcCCC
Confidence 56677778888843 3333332 11234467999999987542 2456789999
Q ss_pred eEEEeccccccCCCccCCCCeeeeccccccccccceEeecCCCCcchhhHHHHHHhHHHHHHHHH
Q psy7978 53 AVVIDCGINSVPDASKASGQKLVGDVQYAEAKNVASWITPVPGGVGPMTVAMLMNNTVLSAERYI 117 (542)
Q Consensus 53 avVIDVGin~~~d~~~~~~~kl~GDVdf~~v~~~a~~iTPVPGGVGpmTvamL~~N~v~aa~~~~ 117 (542)
++|+|+=.+.. + -.|-...++.++ ++-.| .-||+.+...+.+.+.
T Consensus 215 ~~v~DivY~P~--~-----------T~ll~~A~~~G~--~~~~G-----~~Ml~~Qa~~~f~~wt 259 (278)
T PRK00258 215 TIVYDMIYGPL--P-----------TPFLAWAKAQGA--RTIDG-----LGMLVHQAAEAFELWT 259 (278)
T ss_pred CEEEEeecCCC--C-----------CHHHHHHHHCcC--eecCC-----HHHHHHHHHHHHHHHc
Confidence 99999955432 1 123222233333 33344 5688888777765544
No 165
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=39.60 E-value=18 Score=37.04 Aligned_cols=35 Identities=37% Similarity=0.581 Sum_probs=26.8
Q ss_pred CHHHHhhhCCEEEEeccCCCceec------CcccCCeEEEec
Q psy7978 23 NIQDVVKSADILVVGIGQPEYVKG------DWIKPGAVVIDC 58 (542)
Q Consensus 23 nl~~~~k~ADIVIsAvG~p~lI~~------d~ik~GavVIDV 58 (542)
+..+.+++|||||.|+- |.-+.. +.++++.+|||+
T Consensus 56 ~~~e~~~~aDiIiLavk-P~~~~~vl~~l~~~~~~~~lvISi 96 (272)
T PRK12491 56 NNNEVANSADILILSIK-PDLYSSVINQIKDQIKNDVIVVTI 96 (272)
T ss_pred CcHHHHhhCCEEEEEeC-hHHHHHHHHHHHHhhcCCcEEEEe
Confidence 55667889999999999 554332 447789999997
No 166
>KOG0069|consensus
Probab=38.94 E-value=35 Score=36.71 Aligned_cols=61 Identities=16% Similarity=0.225 Sum_probs=45.1
Q ss_pred CchHHHHHHHhCCCe-eecCCCC--------------CHHHHhhhCCEEEEeccCC----CceecC---cccCCeEEEec
Q psy7978 1 MWSSLQTFWLWVLAN-PSMSKTK--------------NIQDVVKSADILVVGIGQP----EYVKGD---WIKPGAVVIDC 58 (542)
Q Consensus 1 vgkPLa~LL~~~~AT-icHs~T~--------------nl~~~~k~ADIVIsAvG~p----~lI~~d---~ik~GavVIDV 58 (542)
||+=+|..|..-|+. ..|++++ ++.+..+++|+||++..-- ++|+++ +.|+|+++|++
T Consensus 173 IG~~ia~rL~~Fg~~i~y~~r~~~~~~~~~~~~~~~~d~~~~~~~sD~ivv~~pLt~~T~~liNk~~~~~mk~g~vlVN~ 252 (336)
T KOG0069|consen 173 IGKAIAKRLKPFGCVILYHSRTQLPPEEAYEYYAEFVDIEELLANSDVIVVNCPLTKETRHLINKKFIEKMKDGAVLVNT 252 (336)
T ss_pred HHHHHHHhhhhccceeeeecccCCchhhHHHhcccccCHHHHHhhCCEEEEecCCCHHHHHHhhHHHHHhcCCCeEEEec
Confidence 466677777766754 6666642 6788899999999998754 366654 45999999998
Q ss_pred ccc
Q psy7978 59 GIN 61 (542)
Q Consensus 59 Gin 61 (542)
+=-
T Consensus 253 aRG 255 (336)
T KOG0069|consen 253 ARG 255 (336)
T ss_pred ccc
Confidence 743
No 167
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=38.40 E-value=34 Score=37.57 Aligned_cols=37 Identities=14% Similarity=0.288 Sum_probs=28.2
Q ss_pred HHhhhCCEEEEeccCCC---------cee------cCcccCCeEEEeccccc
Q psy7978 26 DVVKSADILVVGIGQPE---------YVK------GDWIKPGAVVIDCGINS 62 (542)
Q Consensus 26 ~~~k~ADIVIsAvG~p~---------lI~------~d~ik~GavVIDVGin~ 62 (542)
+.+++||++|++++.|- .+- ...+++|++|||-.+..
T Consensus 72 ~~~~~advvii~Vptp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~~STv~ 123 (425)
T PRK15182 72 EKIKECNFYIITVPTPINTYKQPDLTPLIKASETVGTVLNRGDIVVYESTVY 123 (425)
T ss_pred HHHcCCCEEEEEcCCCCCCCCCcchHHHHHHHHHHHHhcCCCCEEEEecCCC
Confidence 35789999999999982 221 24568999999977765
No 168
>PLN02591 tryptophan synthase
Probab=37.81 E-value=2.3e+02 Score=29.22 Aligned_cols=151 Identities=18% Similarity=0.210 Sum_probs=91.0
Q ss_pred eehhhhh--cCCCCCCCCCCCCCccc------CccCHHHHhccCC----cccccCccccCCCCCcE---EEeCCCCCCHH
Q psy7978 306 TVRALKM--HGGGPSVVSGQPLKPEY------TENTRAVLRGEDS----FLLYCKLDSQYLEHPPV---TMLIYYTYTPA 370 (542)
Q Consensus 306 TvRALK~--HGG~~~~~~g~p~~~~l------~~en~~al~~G~~----~~~~~NL~~H~fGvpvV---AiN~F~tDT~~ 370 (542)
|++.++. -+|+.-...|-|-.+-+ .+.+..||+.|.. |++..++.+ ++.+|+| ..|-+..-
T Consensus 18 ~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~G~~~~~~~~~~~~~r~-~~~~p~ilm~Y~N~i~~~--- 93 (250)
T PLN02591 18 TAEALRLLDACGADVIELGVPYSDPLADGPVIQAAATRALEKGTTLDSVISMLKEVAP-QLSCPIVLFTYYNPILKR--- 93 (250)
T ss_pred HHHHHHHHHHCCCCEEEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhc-CCCCCEEEEecccHHHHh---
Confidence 4454542 36666655665554433 4557789999954 333444442 3678866 66754331
Q ss_pred HHHHHHHHHHHcCCCeEEEccccccCchhHHHHHHHHHHHhccCCCCcccccCCCCCHHHHHHHHHHHH---------hc
Q psy7978 371 EWEIIRKAAKQAGAHDAVVCENWAKGGAGAADLADAVIKATELKDKQFKYLYDIHDPLLTKIQTVAREM---------YG 441 (542)
Q Consensus 371 Ei~~i~~~~~~~G~~~~~v~~~~a~GG~Ga~~LA~~Vv~a~~~~~~~f~~lY~~~~~l~eKI~~IA~~I---------YG 441 (542)
=++...+.|+++|+..+.+-+. . .|-++.+.+.|++..-++=++...+.+ ++.|+.||+.- +|
T Consensus 94 G~~~F~~~~~~aGv~GviipDL-P------~ee~~~~~~~~~~~gl~~I~lv~Ptt~-~~ri~~ia~~~~gFIY~Vs~~G 165 (250)
T PLN02591 94 GIDKFMATIKEAGVHGLVVPDL-P------LEETEALRAEAAKNGIELVLLTTPTTP-TERMKAIAEASEGFVYLVSSTG 165 (250)
T ss_pred HHHHHHHHHHHcCCCEEEeCCC-C------HHHHHHHHHHHHHcCCeEEEEeCCCCC-HHHHHHHHHhCCCcEEEeeCCC
Confidence 2345567788999975555543 1 344556677775432134456655555 67888888862 34
Q ss_pred CCce--ecChHHHHHHHHHHHcCCCCCceeE
Q psy7978 442 VHKV--DCPQPVLEKLQKLERLGYGRLTVCM 470 (542)
Q Consensus 442 A~~V--~~s~~A~~~l~~~e~~G~~~lPVCm 470 (542)
..+. .+++...+.++++++. .++|||+
T Consensus 166 vTG~~~~~~~~~~~~i~~vk~~--~~~Pv~v 194 (250)
T PLN02591 166 VTGARASVSGRVESLLQELKEV--TDKPVAV 194 (250)
T ss_pred CcCCCcCCchhHHHHHHHHHhc--CCCceEE
Confidence 4444 4456667778888884 7999997
No 169
>TIGR02116 toxin_Txe_YoeB toxin-antitoxin system, toxin component, Txe/YoeB family. The Axe-Txe pair in Enterococcus faecium and the homologous YefM-YoeB pair in Escherichia coli have been shown to act as an antitoxin-toxin pair. This model describes the toxin component. Nearly every example found is next to an identifiable antitoxin, as indicated by matches to TIGR01552 and/or pfam02604.
Probab=37.67 E-value=19 Score=30.12 Aligned_cols=53 Identities=13% Similarity=0.169 Sum_probs=29.6
Q ss_pred cChHHHHHHHHHHHcC------CCCCceeEEccCCCCCCC-CCCCCCCCCC-ceEEee-EEEe
Q psy7978 447 CPQPVLEKLQKLERLG------YGRLTVCMAKTALSLSGD-PTIKGVVPPD-YVLPIH-DVYV 500 (542)
Q Consensus 447 ~s~~A~~~l~~~e~~G------~~~lPVCmAKTqySlS~d-p~~~G~~P~~-f~~~vr-dv~~ 500 (542)
|++.|+++|+++.+.. +.+.--.++..|++-+.+ .+|+|. ..| |.+.|. |-|+
T Consensus 1 ~~~~a~kdlkkl~k~~~~~~~~i~~~i~~l~~~P~~~~~~~~~L~G~-~~g~~r~rig~dyRI 62 (80)
T TIGR02116 1 FTPEAWEDYKKWQEADKKLKKKINELIKDVRRDPFKGKGKPEPLKGD-LSGYWSRRITDEHRL 62 (80)
T ss_pred CCHHHHHHHHHHHHcCHHHHHHHHHHHHHHHcCCCCCCCCcccCCCC-CCCcEEEEcCCCeEE
Confidence 4566666666654321 111111234557764433 458999 899 488887 6665
No 170
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=37.52 E-value=16 Score=31.79 Aligned_cols=56 Identities=13% Similarity=0.259 Sum_probs=42.1
Q ss_pred HHHHhCCCe-eecCCCCC----HHHHhhh--CCEEEEeccCCCcee--cCcccCCeEEEeccccc
Q psy7978 7 TFWLWVLAN-PSMSKTKN----IQDVVKS--ADILVVGIGQPEYVK--GDWIKPGAVVIDCGINS 62 (542)
Q Consensus 7 ~LL~~~~AT-icHs~T~n----l~~~~k~--ADIVIsAvG~p~lI~--~d~ik~GavVIDVGin~ 62 (542)
.++.+.||+ +++....+ +++++.. .|+||-++|.+..+. -+.++++..++.+|...
T Consensus 28 ~~~~~~Ga~~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~vg~~~ 92 (130)
T PF00107_consen 28 ELAKELGADHVIDYSDDDFVEQIRELTGGRGVDVVIDCVGSGDTLQEAIKLLRPGGRIVVVGVYG 92 (130)
T ss_dssp HHHHHTTESEEEETTTSSHHHHHHHHTTTSSEEEEEESSSSHHHHHHHHHHEEEEEEEEEESSTS
T ss_pred HHHHhhcccccccccccccccccccccccccceEEEEecCcHHHHHHHHHHhccCCEEEEEEccC
Confidence 455667888 77776664 4455543 999999999777654 56789999999999874
No 171
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=37.04 E-value=16 Score=36.91 Aligned_cols=38 Identities=29% Similarity=0.540 Sum_probs=25.1
Q ss_pred HHHhhhCCEEEEeccCCCcee-----cCcccCCeEEEeccccc
Q psy7978 25 QDVVKSADILVVGIGQPEYVK-----GDWIKPGAVVIDCGINS 62 (542)
Q Consensus 25 ~~~~k~ADIVIsAvG~p~lI~-----~d~ik~GavVIDVGin~ 62 (542)
.+.++++|+||.|+....+.+ ...+++|++|+|||...
T Consensus 40 ~~~~~~~DlvvlavP~~~~~~~l~~~~~~~~~~~iv~Dv~SvK 82 (258)
T PF02153_consen 40 IEAVEDADLVVLAVPVSAIEDVLEEIAPYLKPGAIVTDVGSVK 82 (258)
T ss_dssp HHHGGCCSEEEE-S-HHHHHHHHHHHHCGS-TTSEEEE--S-C
T ss_pred HhHhcCCCEEEEcCCHHHHHHHHHHhhhhcCCCcEEEEeCCCC
Confidence 467899999999998776422 34788999999999763
No 172
>TIGR02385 RelE_StbE addiction module toxin, RelE/StbE family. Plasmids may be maintained stably in bacterial populations through the action of addiction modules, in which a toxin and antidote are encoded in a cassette on the plasmid. In any daughter cell that lacks the plasmid, the toxin persists and is lethal after the antidote protein is depleted. Toxin/antitoxin pairs are also found on main chromosomes, and likely represent selfish DNA. Sequences in the seed for this alignment all are found adjacent to RelB/DinJ family antitoxin genes (TIGR02384), as are most genes found by the resulting model. StbE from Morganella morganii plasmid R485 shows typical behaviour for an addiction module toxin. It cannot be cloned without its partner (the antitoxin), whereas its partner cannot confer plasmid stability without StbE.
Probab=36.58 E-value=43 Score=27.13 Aligned_cols=50 Identities=12% Similarity=0.119 Sum_probs=25.7
Q ss_pred eecChHHHHHHHHHHHcCCCCCce------eEEccC---CCCCCCCCCCCCCCCC-ceEEee
Q psy7978 445 VDCPQPVLEKLQKLERLGYGRLTV------CMAKTA---LSLSGDPTIKGVVPPD-YVLPIH 496 (542)
Q Consensus 445 V~~s~~A~~~l~~~e~~G~~~lPV------CmAKTq---ySlS~dp~~~G~~P~~-f~~~vr 496 (542)
|.||+.|+++|+++.+.=....|- ++.++. .++.+.| ++|. .+| |.+.|.
T Consensus 2 i~~t~~A~~dl~~i~~~i~~~~~~~~~~i~~i~~~~~~~~~l~~~p-l~G~-~~g~r~~~v~ 61 (88)
T TIGR02385 2 IVYTEQFKKDLKKIKKYIRKDLPKLLEVIELLINGKPLERRYRDHP-LTGS-WKGTRECHIE 61 (88)
T ss_pred ceECHHHHHHHHHHHhhcCccHHHHHHHHHHHhcCCcCCccccCcc-ccCC-cCCeEEEEEC
Confidence 567777777777665431122222 122222 2455444 6787 677 345555
No 173
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=36.50 E-value=31 Score=37.15 Aligned_cols=62 Identities=10% Similarity=0.097 Sum_probs=43.4
Q ss_pred CchHHHHHHHhCCCe-eec-CC--C-----------CCHHHHhhhCCEEEEeccCC---Ccee---cCcccCCeEEE-ec
Q psy7978 1 MWSSLQTFWLWVLAN-PSM-SK--T-----------KNIQDVVKSADILVVGIGQP---EYVK---GDWIKPGAVVI-DC 58 (542)
Q Consensus 1 vgkPLa~LL~~~~AT-icH-s~--T-----------~nl~~~~k~ADIVIsAvG~p---~lI~---~d~ik~GavVI-DV 58 (542)
+|+++|..|...|.. +++ .. + .++.+.+++||||+..+.-+ +++. ...+|+|++++ -=
T Consensus 27 IG~amA~nL~d~G~~ViV~~r~~~s~~~A~~~G~~v~sl~Eaak~ADVV~llLPd~~t~~V~~~eil~~MK~GaiL~f~h 106 (335)
T PRK13403 27 QGHAQAQNLRDSGVEVVVGVRPGKSFEVAKADGFEVMSVSEAVRTAQVVQMLLPDEQQAHVYKAEVEENLREGQMLLFSH 106 (335)
T ss_pred HHHHHHHHHHHCcCEEEEEECcchhhHHHHHcCCEECCHHHHHhcCCEEEEeCCChHHHHHHHHHHHhcCCCCCEEEECC
Confidence 589999999998888 333 21 1 16889999999999999753 4554 34468888654 33
Q ss_pred cccc
Q psy7978 59 GINS 62 (542)
Q Consensus 59 Gin~ 62 (542)
|.|-
T Consensus 107 gfni 110 (335)
T PRK13403 107 GFNI 110 (335)
T ss_pred Ccce
Confidence 5553
No 174
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=36.17 E-value=36 Score=34.67 Aligned_cols=37 Identities=16% Similarity=0.387 Sum_probs=26.4
Q ss_pred CHHHHhhhCCEEEEeccCCCc---ee--cCcccCCeEEEecc
Q psy7978 23 NIQDVVKSADILVVGIGQPEY---VK--GDWIKPGAVVIDCG 59 (542)
Q Consensus 23 nl~~~~k~ADIVIsAvG~p~l---I~--~d~ik~GavVIDVG 59 (542)
++.+.++.+|+||.++....+ +. ..+++++.+||++.
T Consensus 64 ~~~~~~~~~D~vi~~v~~~~~~~v~~~l~~~~~~~~~vi~~~ 105 (325)
T PRK00094 64 DLAEALADADLILVAVPSQALREVLKQLKPLLPPDAPIVWAT 105 (325)
T ss_pred CHHHHHhCCCEEEEeCCHHHHHHHHHHHHhhcCCCCEEEEEe
Confidence 566677899999999987532 11 23567888888883
No 175
>COG1959 Predicted transcriptional regulator [Transcription]
Probab=35.11 E-value=28 Score=32.91 Aligned_cols=19 Identities=21% Similarity=0.358 Sum_probs=15.8
Q ss_pred CCCHHHHHHHcCCCccccc
Q psy7978 150 PKDINQLAQEIGLHVSEVS 168 (542)
Q Consensus 150 ~~~I~~ia~~lgl~~~~l~ 168 (542)
+-++++||++.||++..|+
T Consensus 25 ~~s~~~IA~~~~is~~~L~ 43 (150)
T COG1959 25 PVSSAEIAERQGISPSYLE 43 (150)
T ss_pred cccHHHHHHHhCcCHHHHH
Confidence 6778999999999986554
No 176
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=34.66 E-value=3.7e+02 Score=24.77 Aligned_cols=112 Identities=15% Similarity=0.075 Sum_probs=57.6
Q ss_pred CCCcE-EEeCCCCC--CHHHHHHHHHHHHHcCCCeEEEcc-cc-ccC---chhHHHHHHHHHHHhccCCCC-cccccCCC
Q psy7978 355 EHPPV-TMLIYYTY--TPAEWEIIRKAAKQAGAHDAVVCE-NW-AKG---GAGAADLADAVIKATELKDKQ-FKYLYDIH 425 (542)
Q Consensus 355 GvpvV-AiN~F~tD--T~~Ei~~i~~~~~~~G~~~~~v~~-~~-a~G---G~Ga~~LA~~Vv~a~~~~~~~-f~~lY~~~ 425 (542)
.+|++ .++....+ |++-++.+ +.+++.|+. ++... .| ..- -++..+.-++|.+++ +..-+ +=+.|+..
T Consensus 48 ~~~v~~~v~~~~~~~~~~~~~~~a-~~a~~~Gad-~i~v~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~pv~iy~~p~~ 124 (201)
T cd00945 48 DVPVIVVVGFPTGLTTTEVKVAEV-EEAIDLGAD-EIDVVINIGSLKEGDWEEVLEEIAAVVEAA-DGGLPLKVILETRG 124 (201)
T ss_pred CCeEEEEecCCCCCCcHHHHHHHH-HHHHHcCCC-EEEEeccHHHHhCCCHHHHHHHHHHHHHHh-cCCceEEEEEECCC
Confidence 48888 88876533 45445444 456778996 55442 33 222 145555556666665 21201 11223322
Q ss_pred C-CH--HHHHHHHHHHHhcCCceecChH------HHHHHHHHHHcCCCCCceeE
Q psy7978 426 D-PL--LTKIQTVAREMYGVHKVDCPQP------VLEKLQKLERLGYGRLTVCM 470 (542)
Q Consensus 426 ~-~l--~eKI~~IA~~IYGA~~V~~s~~------A~~~l~~~e~~G~~~lPVCm 470 (542)
. +. -.++-.++ +..|++.|..+.. -..+++++.+.--.++||.+
T Consensus 125 ~~~~~~~~~~~~~~-~~~g~~~iK~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~ 177 (201)
T cd00945 125 LKTADEIAKAARIA-AEAGADFIKTSTGFGGGGATVEDVKLMKEAVGGRVGVKA 177 (201)
T ss_pred CCCHHHHHHHHHHH-HHhCCCEEEeCCCCCCCCCCHHHHHHHHHhcccCCcEEE
Confidence 2 32 22333334 3479999988875 45666666553112455543
No 177
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=34.44 E-value=2.7e+02 Score=28.82 Aligned_cols=151 Identities=17% Similarity=0.258 Sum_probs=91.4
Q ss_pred eehhhhh--cCCCCCCCCCCCCCccc------CccCHHHHhccCC----cccccCccccCCCCCcE---EEeCCCCCCHH
Q psy7978 306 TVRALKM--HGGGPSVVSGQPLKPEY------TENTRAVLRGEDS----FLLYCKLDSQYLEHPPV---TMLIYYTYTPA 370 (542)
Q Consensus 306 TvRALK~--HGG~~~~~~g~p~~~~l------~~en~~al~~G~~----~~~~~NL~~H~fGvpvV---AiN~F~tDT~~ 370 (542)
|.+.++. -+|+.-...|-|-.+-+ .+.+..||+.|.. |.....+.+ ++.+|+| -.|-+..--
T Consensus 31 ~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~g~~~~~~~~~~~~~r~-~~~~p~vlm~Y~N~i~~~G-- 107 (263)
T CHL00200 31 TKKALKILDKKGADIIELGIPYSDPLADGPIIQEASNRALKQGINLNKILSILSEVNG-EIKAPIVIFTYYNPVLHYG-- 107 (263)
T ss_pred HHHHHHHHHHCCCCEEEECCCCCCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhc-CCCCCEEEEecccHHHHhC--
Confidence 4454542 26666666666554433 4557788999943 222233322 3778966 677543322
Q ss_pred HHHHHHHHHHHcCCCeEEEccccccCchhHHHHHHHHHHHhccCCCCcccccCCCCCHHHHHHHHHHHH---------hc
Q psy7978 371 EWEIIRKAAKQAGAHDAVVCENWAKGGAGAADLADAVIKATELKDKQFKYLYDIHDPLLTKIQTVAREM---------YG 441 (542)
Q Consensus 371 Ei~~i~~~~~~~G~~~~~v~~~~a~GG~Ga~~LA~~Vv~a~~~~~~~f~~lY~~~~~l~eKI~~IA~~I---------YG 441 (542)
++...+.|+++|+..+.+-+- . .+-++.+.+.|.+..-++=++...+.| .+.|+.|++.- +|
T Consensus 108 -~e~F~~~~~~aGvdgviipDL-P------~ee~~~~~~~~~~~gi~~I~lv~PtT~-~eri~~i~~~a~gFIY~vS~~G 178 (263)
T CHL00200 108 -INKFIKKISQAGVKGLIIPDL-P------YEESDYLISVCNLYNIELILLIAPTSS-KSRIQKIARAAPGCIYLVSTTG 178 (263)
T ss_pred -HHHHHHHHHHcCCeEEEecCC-C------HHHHHHHHHHHHHcCCCEEEEECCCCC-HHHHHHHHHhCCCcEEEEcCCC
Confidence 233456688899975554443 1 234667777776533245567777765 56777777653 35
Q ss_pred CCce--ecChHHHHHHHHHHHcCCCCCceeE
Q psy7978 442 VHKV--DCPQPVLEKLQKLERLGYGRLTVCM 470 (542)
Q Consensus 442 A~~V--~~s~~A~~~l~~~e~~G~~~lPVCm 470 (542)
..+. .+.+..++-++++++ +.++|||+
T Consensus 179 vTG~~~~~~~~~~~~i~~ir~--~t~~Pi~v 207 (263)
T CHL00200 179 VTGLKTELDKKLKKLIETIKK--MTNKPIIL 207 (263)
T ss_pred CCCCCccccHHHHHHHHHHHH--hcCCCEEE
Confidence 5555 566778888888888 46899997
No 178
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=34.15 E-value=29 Score=31.92 Aligned_cols=26 Identities=15% Similarity=0.346 Sum_probs=20.7
Q ss_pred eecCCCCCHHHHhhhCCEEEEeccCC
Q psy7978 16 PSMSKTKNIQDVVKSADILVVGIGQP 41 (542)
Q Consensus 16 icHs~T~nl~~~~k~ADIVIsAvG~p 41 (542)
....++.|+.++++.||+||+-.|.-
T Consensus 58 ~~~~~~~~m~~~m~~aDlvIs~aG~~ 83 (167)
T PF04101_consen 58 KVFGFVDNMAELMAAADLVISHAGAG 83 (167)
T ss_dssp EEECSSSSHHHHHHHHSEEEECS-CH
T ss_pred EEEechhhHHHHHHHcCEEEeCCCcc
Confidence 34567889999999999999987753
No 179
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=33.61 E-value=94 Score=33.97 Aligned_cols=125 Identities=13% Similarity=0.208 Sum_probs=66.6
Q ss_pred eecCCCCcchhhHHHHHHhHHHHH--HHHHhhhcCCCCCCCCCCCCCCCCCCCchHHHhhcCCCCHHHHHHHcCCCcccc
Q psy7978 90 ITPVPGGVGPMTVAMLMNNTVLSA--ERYIDRLLKPSWNLHTLPLNLQSPVPSDIDIARAQDPKDINQLAQEIGLHVSEV 167 (542)
Q Consensus 90 iTPVPGGVGpmTvamL~~N~v~aa--~~~~~~~~~~~W~l~~~~l~~~~~m~sd~eia~~~~~~~I~~ia~~lgl~~~~l 167 (542)
|.--+||+|.-|.+.-+ .+.++ ++++.. |...| .+-.--..|-.++.-+.-.+.|-+.+||++.|+
T Consensus 93 ~~~gdsg~GKttllL~l--~IalaaG~~lfG~-----~v~ep-----GkvlyvslEl~re~~L~Rl~~v~a~mgLsPadv 160 (402)
T COG3598 93 ILYGDSGVGKTTLLLYL--CIALAAGKNLFGN-----KVKEP-----GKVLYVSLELYREDILERLEPVRARMGLSPADV 160 (402)
T ss_pred EEecCCcccHhHHHHHH--HHHHHhhHHHhcc-----cccCC-----CeEEEEEeccChHHHHHHHHHHHHHcCCChHhh
Confidence 34457999997765544 33333 233331 33332 111001123334444556778889999998876
Q ss_pred ccc------c--CceeEechhhhhhhh---cCCCCcEEeehH-------------------HHHHhhc----ccceeeee
Q psy7978 168 SSY------G--RSKAKISTEVLDRLK---RVQDGKYIILFL-------------------KLLLLDF----GYTFACVR 213 (542)
Q Consensus 168 ~~y------G--~~kAKi~~~~l~~~~---~~~~gklilVTa-------------------~aL~~~l----~~~~~~lR 213 (542)
..- | .-++++.+.++.|.. .+.+-++|++-. ..+. |+ .-++.-+-
T Consensus 161 rn~dltd~~Gaa~~~d~l~pkl~rRfek~~~Q~rp~~vViDp~v~f~~G~s~s~vqv~~fi~~~r-kla~~l~caIiy~h 239 (402)
T COG3598 161 RNMDLTDVSGAADESDVLSPKLYRRFEKILEQKRPDFVVIDPFVAFYEGKSISDVQVKEFIKKTR-KLARNLECAIIYIH 239 (402)
T ss_pred hheeccccccCCCccccccHHHHHHHHHHHHHhCCCeEEEcchhhhcCCccchhHHHHHHHHHHH-HHHHhcCCeEEEEe
Confidence 533 2 234566664444421 123456777755 3332 33 56777888
Q ss_pred cCCCCCcccccccCCCC
Q psy7978 214 QPSQGPTFGIKGGAAGG 230 (542)
Q Consensus 214 ePSlGPvFGiKGGAaGG 230 (542)
-||-+ ++|+++.++
T Consensus 240 Htsks---s~~~ksgrs 253 (402)
T COG3598 240 HTSKS---SGKNKSGRS 253 (402)
T ss_pred ccccc---cCCCCCCCC
Confidence 88866 555553333
No 180
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=33.36 E-value=1.2e+02 Score=33.27 Aligned_cols=96 Identities=14% Similarity=0.162 Sum_probs=60.5
Q ss_pred cccCccCHHHHhccCCcccccCccccCCCCCcE-EEeCCCCCCHHH---HHHHHHHHHHcCCCeEEEccccccCchhHHH
Q psy7978 327 PEYTENTRAVLRGEDSFLLYCKLDSQYLEHPPV-TMLIYYTYTPAE---WEIIRKAAKQAGAHDAVVCENWAKGGAGAAD 402 (542)
Q Consensus 327 ~~l~~en~~al~~G~~~~~~~NL~~H~fGvpvV-AiN~F~tDT~~E---i~~i~~~~~~~G~~~~~v~~~~a~GG~Ga~~ 402 (542)
..+++|++..++.- ||. -..|++ +.|+-..|-.+. ++.|+++.++.+.. +++..+ + .|
T Consensus 188 ~~~~~e~~~~l~~l-------~ll---t~KP~lyvaN~~e~~~~~~n~~~~~i~~~~~~~~~~-vV~~sA-----~--~E 249 (372)
T COG0012 188 SKWSEEDLEALASL-------NLL---TAKPMLYVANVSEDDLANLNEYVKRLKELAAKENAE-VVPVSA-----A--IE 249 (372)
T ss_pred ccCCHHHHHHHHHh-------hhh---hcCCeEEEEECCcccccchhHHHHHHHHHhhhcCCc-EEEeeH-----H--HH
Confidence 45666666555544 333 457999 999988777654 89999999988886 555433 1 11
Q ss_pred HHHHHHHHhc-cCCCCcccccCCCCCHHHHHHHHHHHHhcCCce
Q psy7978 403 LADAVIKATE-LKDKQFKYLYDIHDPLLTKIQTVAREMYGVHKV 445 (542)
Q Consensus 403 LA~~Vv~a~~-~~~~~f~~lY~~~~~l~eKI~~IA~~IYGA~~V 445 (542)
+ ++.++.+ .+..+|--.+. +. ++.|+.+.++-||.-++
T Consensus 250 ~--eL~~l~~~~e~~~F~~~~g--~~-~~~l~~~i~~~y~~lgl 288 (372)
T COG0012 250 L--ELRELADAEEKGEFLIELG--QK-ESGLNELIRAGYGLLGL 288 (372)
T ss_pred H--HHHhCccccchhhHHHhcC--cc-hhHHHHHHHHHhcccch
Confidence 1 2222332 21113444444 33 78999999999998876
No 181
>TIGR00053 addiction module toxin component, YafQ family. This model represents a cluster of eubacterial proteins and a cluster of archaeal proteins, all of which are uncharacterized, from 85 to 102 residues in length, and similar in sequence. These include YafQ, a ribosome-associated endoribonuclease that serves as part of a toxin-antitoxin system, for which DinJ is the antidote component.
Probab=32.52 E-value=25 Score=29.67 Aligned_cols=55 Identities=24% Similarity=0.305 Sum_probs=32.3
Q ss_pred ceecChHHHHHHHHHHH-cCC--CCC---ceeEEcc-CCCCC-CCCCCCCCCCCCc-eEEe-eEEE
Q psy7978 444 KVDCPQPVLEKLQKLER-LGY--GRL---TVCMAKT-ALSLS-GDPTIKGVVPPDY-VLPI-HDVY 499 (542)
Q Consensus 444 ~V~~s~~A~~~l~~~e~-~G~--~~l---PVCmAKT-qySlS-~dp~~~G~~P~~f-~~~v-rdv~ 499 (542)
.|.|++.|+++++++.+ .+. ..+ --+++.+ +..-+ .+-.|+|. .+|| .++| .|.|
T Consensus 3 ~i~~~~~a~k~lkkl~~~~~~~~~~i~~~i~~l~~~~~~p~~~~~~~L~G~-~~g~~r~rv~~~~R 67 (89)
T TIGR00053 3 KIEYSKQFDKDLKKLSKRNGKDLKKLLKKMEELINTLPLPEHYKDHPLRGP-WKGFRRCHIKPDVV 67 (89)
T ss_pred ceEECHHHHHHHHHHHHhCCccHHHHHHHHHHHHcCCCCCcccCCccCcCC-cCCCEEEeeCCCEE
Confidence 47899999999988876 211 111 1134443 22222 23369999 8885 7777 4543
No 182
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=32.05 E-value=3e+02 Score=28.57 Aligned_cols=91 Identities=14% Similarity=0.222 Sum_probs=61.1
Q ss_pred CCCCCcE-EEe-C---CCCCCHHHHHHHHH---HHHHcCCCeEEEccccccCchhHHHHHHHHHHHhccCCCCcccccCC
Q psy7978 353 YLEHPPV-TML-I---YYTYTPAEWEIIRK---AAKQAGAHDAVVCENWAKGGAGAADLADAVIKATELKDKQFKYLYDI 424 (542)
Q Consensus 353 ~fGvpvV-AiN-~---F~tDT~~Ei~~i~~---~~~~~G~~~~~v~~~~a~GG~Ga~~LA~~Vv~a~~~~~~~f~~lY~~ 424 (542)
...+|+. -|- | | .-|++|++..++ .|+++|+. -+|-..-.+-|.=-.+.-+.+++++..-.-.||-.+|.
T Consensus 49 ~~~ipv~vMIRPR~gdF-~Ys~~E~~~M~~di~~~~~~Gad-GvV~G~L~~dg~vD~~~~~~Li~~a~~~~vTFHRAfD~ 126 (248)
T PRK11572 49 RVTIPVHPIIRPRGGDF-CYSDGEFAAMLEDIATVRELGFP-GLVTGVLDVDGHVDMPRMRKIMAAAGPLAVTFHRAFDM 126 (248)
T ss_pred hcCCCeEEEEecCCCCC-CCCHHHHHHHHHHHHHHHHcCCC-EEEEeeECCCCCcCHHHHHHHHHHhcCCceEEechhhc
Confidence 3578988 554 2 4 357888888776 67789996 44444444444444555577788875311148889998
Q ss_pred CCCHHHHHHHHHHHHhcCCceec
Q psy7978 425 HDPLLTKIQTVAREMYGVHKVDC 447 (542)
Q Consensus 425 ~~~l~eKI~~IA~~IYGA~~V~~ 447 (542)
-....+-++.+.. +|-+.|==
T Consensus 127 ~~d~~~al~~l~~--lG~~rILT 147 (248)
T PRK11572 127 CANPLNALKQLAD--LGVARILT 147 (248)
T ss_pred cCCHHHHHHHHHH--cCCCEEEC
Confidence 8777888888887 58777643
No 183
>KOG2336|consensus
Probab=31.91 E-value=24 Score=37.54 Aligned_cols=28 Identities=39% Similarity=0.612 Sum_probs=25.1
Q ss_pred ccccccccceEeecCCCCcchhhHHHHHH
Q psy7978 79 QYAEAKNVASWITPVPGGVGPMTVAMLMN 107 (542)
Q Consensus 79 df~~v~~~a~~iTPVPGGVGpmTvamL~~ 107 (542)
|||.+..++.+|.-| ||||.+|.-||-|
T Consensus 76 dYErIR~~aVAiVGv-GGVGSV~AeMLTR 103 (422)
T KOG2336|consen 76 DYERIREFAVAIVGV-GGVGSVTAEMLTR 103 (422)
T ss_pred hHHHHhhheeEEEec-CchhHHHHHHHHh
Confidence 578999999999987 9999999999965
No 184
>PLN02712 arogenate dehydrogenase
Probab=31.00 E-value=46 Score=38.81 Aligned_cols=62 Identities=11% Similarity=0.096 Sum_probs=40.8
Q ss_pred CchHHHHHHHhCCCe-eecCCC--------------CCHHHHh-hhCCEEEEeccCCCc---eec---CcccCCeEEEec
Q psy7978 1 MWSSLQTFWLWVLAN-PSMSKT--------------KNIQDVV-KSADILVVGIGQPEY---VKG---DWIKPGAVVIDC 58 (542)
Q Consensus 1 vgkPLa~LL~~~~AT-icHs~T--------------~nl~~~~-k~ADIVIsAvG~p~l---I~~---d~ik~GavVIDV 58 (542)
||.-++..|.+.|.. ++..++ .++.+.+ ++||+||.|+....+ +.. ..+++|++|+||
T Consensus 63 mG~slA~~L~~~G~~V~~~dr~~~~~~A~~~Gv~~~~d~~e~~~~~aDvViLavP~~~~~~vl~~l~~~~l~~g~iVvDv 142 (667)
T PLN02712 63 YGQFLAKTLISQGHTVLAHSRSDHSLAARSLGVSFFLDPHDLCERHPDVILLCTSIISTENVLKSLPLQRLKRNTLFVDV 142 (667)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHcCCEEeCCHHHHhhcCCCEEEEcCCHHHHHHHHHhhhhhcCCCCeEEEEC
Confidence 477788888887766 222221 2445544 469999999985442 321 347899999999
Q ss_pred cccc
Q psy7978 59 GINS 62 (542)
Q Consensus 59 Gin~ 62 (542)
+...
T Consensus 143 ~SvK 146 (667)
T PLN02712 143 LSVK 146 (667)
T ss_pred CCCc
Confidence 8553
No 185
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=30.97 E-value=28 Score=36.56 Aligned_cols=38 Identities=16% Similarity=0.267 Sum_probs=32.1
Q ss_pred CCHHHHhh--hCCEEEEeccCCCceecCcccC------CeEEEecc
Q psy7978 22 KNIQDVVK--SADILVVGIGQPEYVKGDWIKP------GAVVIDCG 59 (542)
Q Consensus 22 ~nl~~~~k--~ADIVIsAvG~p~lI~~d~ik~------GavVIDVG 59 (542)
.+|.+.++ ++|++|-..|+|+.+++|+|+. ..+|+=..
T Consensus 95 ~~L~e~i~~v~ptvlIG~S~~~g~ft~evv~~Ma~~~~~PIIFaLS 140 (279)
T cd05312 95 KSLLEVVKAVKPTVLIGLSGVGGAFTEEVVRAMAKSNERPIIFALS 140 (279)
T ss_pred CCHHHHHHhcCCCEEEEeCCCCCCCCHHHHHHHHhcCCCCEEEECC
Confidence 47999999 8999999999999999999974 56665444
No 186
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=29.44 E-value=41 Score=31.08 Aligned_cols=60 Identities=12% Similarity=0.244 Sum_probs=36.0
Q ss_pred CchHHHHHHHhCCCe--eecCCC----------------CCHHHHhhhCCEEEEeccCCCc-------eecCcccCCeEE
Q psy7978 1 MWSSLQTFWLWVLAN--PSMSKT----------------KNIQDVVKSADILVVGIGQPEY-------VKGDWIKPGAVV 55 (542)
Q Consensus 1 vgkPLa~LL~~~~AT--icHs~T----------------~nl~~~~k~ADIVIsAvG~p~l-------I~~d~ik~GavV 55 (542)
||.=|+..|.+.|.. -+++++ .++.+.+++||++|.|+.--.+ -....+++|.+|
T Consensus 21 VG~~La~aL~~ag~~v~~v~srs~~sa~~a~~~~~~~~~~~~~~~~~~aDlv~iavpDdaI~~va~~La~~~~~~~g~iV 100 (127)
T PF10727_consen 21 VGTALARALARAGHEVVGVYSRSPASAERAAAFIGAGAILDLEEILRDADLVFIAVPDDAIAEVAEQLAQYGAWRPGQIV 100 (127)
T ss_dssp CCCHHHHHHHHTTSEEEEESSCHH-HHHHHHC--TT-----TTGGGCC-SEEEE-S-CCHHHHHHHHHHCC--S-TT-EE
T ss_pred HHHHHHHHHHHCCCeEEEEEeCCcccccccccccccccccccccccccCCEEEEEechHHHHHHHHHHHHhccCCCCcEE
Confidence 577899999988877 445554 2456778999999999986642 222346788888
Q ss_pred Eeccc
Q psy7978 56 IDCGI 60 (542)
Q Consensus 56 IDVGi 60 (542)
+=+.-
T Consensus 101 vHtSG 105 (127)
T PF10727_consen 101 VHTSG 105 (127)
T ss_dssp EES-S
T ss_pred EECCC
Confidence 75543
No 187
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=29.27 E-value=51 Score=33.65 Aligned_cols=41 Identities=12% Similarity=0.301 Sum_probs=29.2
Q ss_pred CCCHHHHhhhCCEEEEeccCC-----Ccee--cCcccCCeEEEecccc
Q psy7978 21 TKNIQDVVKSADILVVGIGQP-----EYVK--GDWIKPGAVVIDCGIN 61 (542)
Q Consensus 21 T~nl~~~~k~ADIVIsAvG~p-----~lI~--~d~ik~GavVIDVGin 61 (542)
|.++++.++.||+||.|+... .++. ...+++++++.+.+.+
T Consensus 75 ~~d~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~sntSt 122 (287)
T PRK08293 75 TTDLAEAVKDADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFATNSST 122 (287)
T ss_pred eCCHHHHhcCCCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEECccc
Confidence 557888889999999999844 2222 2356888888776654
No 188
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=29.15 E-value=98 Score=32.11 Aligned_cols=150 Identities=17% Similarity=0.242 Sum_probs=84.9
Q ss_pred eehhhhh--cCCCCCCCCCCCCCcc------cCccCHHHHhccCCcc----cccCccccCCCCCcE---EEeCCCCCCHH
Q psy7978 306 TVRALKM--HGGGPSVVSGQPLKPE------YTENTRAVLRGEDSFL----LYCKLDSQYLEHPPV---TMLIYYTYTPA 370 (542)
Q Consensus 306 TvRALK~--HGG~~~~~~g~p~~~~------l~~en~~al~~G~~~~----~~~NL~~H~fGvpvV---AiN~F~tDT~~ 370 (542)
|++.++. .+|+.-...|-|-.+- +.+.+..||+.|..+. +...+.+-...+|+| -.|-+-. -
T Consensus 26 ~~~~~~~l~~~GaD~iEiGiPfSDP~ADGpvIq~A~~rAL~~G~~~~~~~~~~~~ir~~~~~~pivlm~Y~N~i~~---~ 102 (259)
T PF00290_consen 26 TLEILKALEEAGADIIEIGIPFSDPVADGPVIQKASQRALKNGFTLEKIFELVKEIRKKEPDIPIVLMTYYNPIFQ---Y 102 (259)
T ss_dssp HHHHHHHHHHTTBSSEEEE--SSSCTTSSHHHHHHHHHHHHTT--HHHHHHHHHHHHHHCTSSEEEEEE-HHHHHH---H
T ss_pred HHHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHhccCCCCCEEEEeeccHHhc---c
Confidence 4555553 5666555555554433 2455677889994422 112222114778888 4453211 1
Q ss_pred HHHHHHHHHHHcCCCeEEEccccccCchhHHHHHHHHHHHhccCCCCccc--ccCCCCCHHHHHHHHHHH---------H
Q psy7978 371 EWEIIRKAAKQAGAHDAVVCENWAKGGAGAADLADAVIKATELKDKQFKY--LYDIHDPLLTKIQTVARE---------M 439 (542)
Q Consensus 371 Ei~~i~~~~~~~G~~~~~v~~~~a~GG~Ga~~LA~~Vv~a~~~~~~~f~~--lY~~~~~l~eKI~~IA~~---------I 439 (542)
-++...+.|+++|+..+.+-+.= .|-++.+.++|++.. +.+ +-..+ +-.+.|++|++. .
T Consensus 103 G~e~F~~~~~~aGvdGlIipDLP-------~ee~~~~~~~~~~~g--l~~I~lv~p~-t~~~Ri~~i~~~a~gFiY~vs~ 172 (259)
T PF00290_consen 103 GIERFFKEAKEAGVDGLIIPDLP-------PEESEELREAAKKHG--LDLIPLVAPT-TPEERIKKIAKQASGFIYLVSR 172 (259)
T ss_dssp -HHHHHHHHHHHTEEEEEETTSB-------GGGHHHHHHHHHHTT---EEEEEEETT-S-HHHHHHHHHH-SSEEEEESS
T ss_pred chHHHHHHHHHcCCCEEEEcCCC-------hHHHHHHHHHHHHcC--CeEEEEECCC-CCHHHHHHHHHhCCcEEEeecc
Confidence 24556677889999766665542 134456667776532 343 33333 457899999986 3
Q ss_pred hcCCce--ecChHHHHHHHHHHHcCCCCCceeE
Q psy7978 440 YGVHKV--DCPQPVLEKLQKLERLGYGRLTVCM 470 (542)
Q Consensus 440 YGA~~V--~~s~~A~~~l~~~e~~G~~~lPVCm 470 (542)
+|..+. .++....+.++++++.- ++|||+
T Consensus 173 ~GvTG~~~~~~~~l~~~i~~ik~~~--~~Pv~v 203 (259)
T PF00290_consen 173 MGVTGSRTELPDELKEFIKRIKKHT--DLPVAV 203 (259)
T ss_dssp SSSSSTTSSCHHHHHHHHHHHHHTT--SS-EEE
T ss_pred CCCCCCcccchHHHHHHHHHHHhhc--CcceEE
Confidence 454444 46678899999999974 999997
No 189
>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....
Probab=28.98 E-value=26 Score=36.36 Aligned_cols=29 Identities=21% Similarity=0.292 Sum_probs=26.6
Q ss_pred CHHHHhhhC--CEEEEeccCCCceecCcccC
Q psy7978 23 NIQDVVKSA--DILVVGIGQPEYVKGDWIKP 51 (542)
Q Consensus 23 nl~~~~k~A--DIVIsAvG~p~lI~~d~ik~ 51 (542)
+|.+.++.+ |++|-..|+|+.+++|+|+.
T Consensus 97 ~L~eav~~~kPtvLIG~S~~~g~ft~evv~~ 127 (255)
T PF03949_consen 97 SLLEAVKGAKPTVLIGLSGQGGAFTEEVVRA 127 (255)
T ss_dssp SHHHHHHCH--SEEEECSSSTTSS-HHHHHH
T ss_pred CHHHHHHhcCCCEEEEecCCCCcCCHHHHHH
Confidence 899999999 99999999999999999974
No 190
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=28.89 E-value=66 Score=33.14 Aligned_cols=73 Identities=16% Similarity=0.307 Sum_probs=42.3
Q ss_pred HHhhhCCEEEEeccCCCceecCcc------------cCCeEEEeccccccCCCccCCCCeeeeccccccccccceEeecC
Q psy7978 26 DVVKSADILVVGIGQPEYVKGDWI------------KPGAVVIDCGINSVPDASKASGQKLVGDVQYAEAKNVASWITPV 93 (542)
Q Consensus 26 ~~~k~ADIVIsAvG~p~lI~~d~i------------k~GavVIDVGin~~~d~~~~~~~kl~GDVdf~~v~~~a~~iTPV 93 (542)
+.+.++|+||.|++....++.+.+ +++.+|+|+=.+..+. .|-...+..++ .-+
T Consensus 186 ~~~~~~DiVInaTp~g~~~~~~~l~~~~~~~~~~~~~~~~~v~D~vY~P~~T-------------~ll~~A~~~G~-~~~ 251 (282)
T TIGR01809 186 AIEKAAEVLVSTVPADVPADYVDLFATVPFLLLKRKSSEGIFLDAAYDPWPT-------------PLVAIVSAAGW-RVI 251 (282)
T ss_pred hcccCCCEEEECCCCCCCCCHHHhhhhhhhhccccCCCCcEEEEEeeCCCCC-------------HHHHHHHHCCC-EEE
Confidence 344678999999987655554332 3567788876654221 12222222332 223
Q ss_pred CCCcchhhHHHHHHhHHHHHHHHHh
Q psy7978 94 PGGVGPMTVAMLMNNTVLSAERYID 118 (542)
Q Consensus 94 PGGVGpmTvamL~~N~v~aa~~~~~ 118 (542)
. | .-||+.+-+.+.+.+.+
T Consensus 252 ~-G-----l~MLv~Qa~~~f~lwtg 270 (282)
T TIGR01809 252 S-G-----LQMLLHQGFAQFEQWTG 270 (282)
T ss_pred C-c-----HHHHHHHHHHHHHHHHC
Confidence 3 3 56888888887766554
No 191
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=28.88 E-value=53 Score=31.86 Aligned_cols=15 Identities=7% Similarity=-0.316 Sum_probs=12.6
Q ss_pred CchHHHHHHHhCCCe
Q psy7978 1 MWSSLQTFWLWVLAN 15 (542)
Q Consensus 1 vgkPLa~LL~~~~AT 15 (542)
||.|+|..|++.|-.
T Consensus 11 vGl~~A~~lA~~G~~ 25 (185)
T PF03721_consen 11 VGLPLAAALAEKGHQ 25 (185)
T ss_dssp THHHHHHHHHHTTSE
T ss_pred chHHHHHHHHhCCCE
Confidence 688999999998755
No 192
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A.
Probab=28.65 E-value=16 Score=38.27 Aligned_cols=47 Identities=11% Similarity=0.150 Sum_probs=28.4
Q ss_pred CHHHHHHHcCCCccccccccCceeEechhhhhhhhcCCCCcEEeehH
Q psy7978 152 DINQLAQEIGLHVSEVSSYGRSKAKISTEVLDRLKRVQDGKYIILFL 198 (542)
Q Consensus 152 ~I~~ia~~lgl~~~~l~~yG~~kAKi~~~~l~~~~~~~~gklilVTa 198 (542)
|=+|+.+.+-...+++.||....+.+|+.+|++..+.++-.-|||.|
T Consensus 86 ~~~el~~~I~~Ea~~~iP~~~~e~~~D~~vl~~~~~~~~~~~Vll~A 132 (340)
T PF11104_consen 86 PEKELEEAIRWEAEQYIPFPLEEVVFDYQVLGESEDGEEKMEVLLVA 132 (340)
T ss_dssp -HHHHHHHHHHHHGGG-SS----EEEEEEESS-GS-TTSEEEEEEEE
T ss_pred CHHHHHHHHHHHHHhhCCCChhHeEEEEEEeccCCCCCCceEEEEEE
Confidence 55777777777789999999999999999887653222223566666
No 193
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=28.47 E-value=83 Score=32.51 Aligned_cols=72 Identities=25% Similarity=0.279 Sum_probs=42.6
Q ss_pred HhhhCCEEEEeccC---CC----ce-ecCcccCCeEEEeccccccCCCccCCCCeeeeccccccccccceEeecCCCCcc
Q psy7978 27 VVKSADILVVGIGQ---PE----YV-KGDWIKPGAVVIDCGINSVPDASKASGQKLVGDVQYAEAKNVASWITPVPGGVG 98 (542)
Q Consensus 27 ~~k~ADIVIsAvG~---p~----lI-~~d~ik~GavVIDVGin~~~d~~~~~~~kl~GDVdf~~v~~~a~~iTPVPGGVG 98 (542)
.+..+||||.++.. |+ .+ +.++++++.+|+|+=.+..+. . |=...+..++ ++-.|
T Consensus 196 ~~~~~DilINaTp~Gm~~~~~~~~~~~~~~l~~~~~v~D~vY~P~~T-------~------ll~~A~~~G~--~~~~G-- 258 (289)
T PRK12548 196 EIASSDILVNATLVGMKPNDGETNIKDTSVFRKDLVVADTVYNPKKT-------K------LLEDAEAAGC--KTVGG-- 258 (289)
T ss_pred hhccCCEEEEeCCCCCCCCCCCCCCCcHHhcCCCCEEEEecCCCCCC-------H------HHHHHHHCCC--eeeCc--
Confidence 44568999998842 21 23 457888899999987665321 1 1112222232 23334
Q ss_pred hhhHHHHHHhHHHHHHHHHh
Q psy7978 99 PMTVAMLMNNTVLSAERYID 118 (542)
Q Consensus 99 pmTvamL~~N~v~aa~~~~~ 118 (542)
.-||+.+-+.+.+.+.+
T Consensus 259 ---~~ML~~Qa~~~f~lwtg 275 (289)
T PRK12548 259 ---LGMLLWQGAEAYKLYTG 275 (289)
T ss_pred ---HHHHHHHHHHHHHHhcC
Confidence 46888888887766553
No 194
>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=28.06 E-value=4.4e+02 Score=25.80 Aligned_cols=107 Identities=17% Similarity=0.252 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHcCCCeEEEccccccCchhHHHHHHHHHHHhccCCCCcccc-cC--CCCCHHHHHHHHHHHHhcCCcee-
Q psy7978 371 EWEIIRKAAKQAGAHDAVVCENWAKGGAGAADLADAVIKATELKDKQFKYL-YD--IHDPLLTKIQTVAREMYGVHKVD- 446 (542)
Q Consensus 371 Ei~~i~~~~~~~G~~~~~v~~~~a~GG~Ga~~LA~~Vv~a~~~~~~~f~~l-Y~--~~~~l~eKI~~IA~~IYGA~~V~- 446 (542)
+++.++..|++.|+. ..+.+.-..-..=..+|.+.+.+..++ .+..+ +- ..+-.++.++.+|.+. |-.-+.
T Consensus 46 ~~e~~~~~A~~lgip-l~~i~~~~~~e~~~~~l~~~l~~~~~~---g~~~vv~G~i~sd~~~~~~e~~~~~~-gl~~~~P 120 (194)
T cd01994 46 NHELLELQAEAMGIP-LIRIEISGEEEDEVEDLKELLRKLKEE---GVDAVVFGAILSEYQRTRVERVCERL-GLEPLAP 120 (194)
T ss_pred CHHHHHHHHHHcCCc-EEEEeCCCCchHHHHHHHHHHHHHHHc---CCCEEEECccccHHHHHHHHHHHHHc-CCEEEec
Confidence 788999999999996 444433112222335666666665432 23322 21 1245788999999984 433332
Q ss_pred -cChHHHHHHHHHHHcCCCCCceeEEccCCCCCCCCCCCCC
Q psy7978 447 -CPQPVLEKLQKLERLGYGRLTVCMAKTALSLSGDPTIKGV 486 (542)
Q Consensus 447 -~s~~A~~~l~~~e~~G~~~lPVCmAKTqySlS~dp~~~G~ 486 (542)
|-..-++=++++-+.||.-.=||++...+ |++.+|+
T Consensus 121 LW~~~~~~ll~e~~~~g~~~~iv~v~~~~L----~~~~lG~ 157 (194)
T cd01994 121 LWGRDQEELLREMIEAGFKAIIIKVAAEGL----DESWLGR 157 (194)
T ss_pred ccCCCHHHHHHHHHHcCCeEEEEEeccCCC----CHHHCCC
Confidence 22344556778888999988888887653 4678898
No 195
>KOG3007|consensus
Probab=27.59 E-value=47 Score=35.29 Aligned_cols=40 Identities=25% Similarity=0.450 Sum_probs=33.4
Q ss_pred CHHHHhhhCCEEEEeccCCC-ceecCcccCCeEEEeccccc
Q psy7978 23 NIQDVVKSADILVVGIGQPE-YVKGDWIKPGAVVIDCGINS 62 (542)
Q Consensus 23 nl~~~~k~ADIVIsAvG~p~-lI~~d~ik~GavVIDVGin~ 62 (542)
++.+.+..+|||+.|+-.-. ++.++|+|||+-+==||..+
T Consensus 200 sl~~aV~~sDIIs~atlstePilfgewlkpgthIdlVGsf~ 240 (333)
T KOG3007|consen 200 SLNGAVSNSDIISGATLSTEPILFGEWLKPGTHIDLVGSFK 240 (333)
T ss_pred hhhcccccCceEEeccccCCceeeeeeecCCceEeeeccCC
Confidence 48889999999999998765 58899999998776677654
No 196
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=27.38 E-value=80 Score=27.21 Aligned_cols=36 Identities=14% Similarity=0.090 Sum_probs=26.4
Q ss_pred HHHHHHhCCCe-eec------CCC-CCHHHHhhhCCEEEEeccC
Q psy7978 5 LQTFWLWVLAN-PSM------SKT-KNIQDVVKSADILVVGIGQ 40 (542)
Q Consensus 5 La~LL~~~~AT-icH------s~T-~nl~~~~k~ADIVIsAvG~ 40 (542)
+..++.+.|++ +.| +.. ..++..+++||+||.-++.
T Consensus 15 ~~~~~~~~G~~~~~hg~~~~~~~~~~~l~~~i~~aD~VIv~t~~ 58 (97)
T PF10087_consen 15 YKRILEKYGGKLIHHGRDGGDEKKASRLPSKIKKADLVIVFTDY 58 (97)
T ss_pred HHHHHHHcCCEEEEEecCCCCccchhHHHHhcCCCCEEEEEeCC
Confidence 45667778999 788 221 1389999999999987653
No 197
>PRK06444 prephenate dehydrogenase; Provisional
Probab=26.75 E-value=35 Score=33.77 Aligned_cols=50 Identities=10% Similarity=0.019 Sum_probs=35.2
Q ss_pred CchHHHHHHHhCCCeeecCCCCCHHHHhhhCCEEEEeccCCCceecCcccC-CeEEEeccccc
Q psy7978 1 MWSSLQTFWLWVLANPSMSKTKNIQDVVKSADILVVGIGQPEYVKGDWIKP-GAVVIDCGINS 62 (542)
Q Consensus 1 vgkPLa~LL~~~~ATicHs~T~nl~~~~k~ADIVIsAvG~p~lI~~d~ik~-GavVIDVGin~ 62 (542)
+|+=++..|.+.|..+. +++||+||.|+.....+ +++++ ..+|+|||...
T Consensus 12 mG~~~~~~~~~~g~~v~----------~~~~DlVilavPv~~~~--~~i~~~~~~v~Dv~SvK 62 (197)
T PRK06444 12 LGRVLCSILDDNGLGVY----------IKKADHAFLSVPIDAAL--NYIESYDNNFVEISSVK 62 (197)
T ss_pred HHHHHHHHHHhCCCEEE----------ECCCCEEEEeCCHHHHH--HHHHHhCCeEEeccccC
Confidence 46777888877776643 57999999999887643 23322 24788999754
No 198
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=26.69 E-value=44 Score=31.16 Aligned_cols=38 Identities=18% Similarity=0.574 Sum_probs=25.9
Q ss_pred CCCHHHHhhhCCEEEEeccCCCc---ee--cCcccCCeEEEec
Q psy7978 21 TKNIQDVVKSADILVVGIGQPEY---VK--GDWIKPGAVVIDC 58 (542)
Q Consensus 21 T~nl~~~~k~ADIVIsAvG~p~l---I~--~d~ik~GavVIDV 58 (542)
|.|+++.++.||+||.|+..-.+ ++ ..+++++.++|-+
T Consensus 60 t~dl~~a~~~ad~IiiavPs~~~~~~~~~l~~~l~~~~~ii~~ 102 (157)
T PF01210_consen 60 TTDLEEALEDADIIIIAVPSQAHREVLEQLAPYLKKGQIIISA 102 (157)
T ss_dssp ESSHHHHHTT-SEEEE-S-GGGHHHHHHHHTTTSHTT-EEEET
T ss_pred ccCHHHHhCcccEEEecccHHHHHHHHHHHhhccCCCCEEEEe
Confidence 57899999999999999988764 22 4556788887754
No 199
>PLN02984 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=26.52 E-value=1.5e+02 Score=31.70 Aligned_cols=64 Identities=23% Similarity=0.312 Sum_probs=40.3
Q ss_pred Ccccc-CCCCCcEEEeCCCCCCHHHHHHHHHHHHHcCCCeEEEccccccCchhHHHHHHHHHHHhccCCCCcccccCCCC
Q psy7978 348 KLDSQ-YLEHPPVTMLIYYTYTPAEWEIIRKAAKQAGAHDAVVCENWAKGGAGAADLADAVIKATELKDKQFKYLYDIHD 426 (542)
Q Consensus 348 NL~~H-~fGvpvVAiN~F~tDT~~Ei~~i~~~~~~~G~~~~~v~~~~a~GG~Ga~~LA~~Vv~a~~~~~~~f~~lY~~~~ 426 (542)
-|.+- ...+|+|=+..| +.+.|+++|++-|.+ .+.+| | . -.+|.+++.+.+++ .|+ .
T Consensus 30 ~~~~~~~~~IPvIDls~~------~~~~l~~A~~~~GFF--~v~nH---G-I-~~~li~~~~~~s~~-------FF~--L 87 (341)
T PLN02984 30 VLDRSKDIDIPVIDMECL------DMEKLREACKDWGIF--RLENH---G-I-PLTLMSQLKEISES-------LLS--L 87 (341)
T ss_pred cccCCccCCCCeEeCcHH------HHHHHHHHHHhCcEE--EEECC---C-C-CHHHHHHHHHHHHH-------HHc--C
Confidence 33443 456999955555 357889999999985 66666 2 2 25666666666532 232 4
Q ss_pred CHHHHHH
Q psy7978 427 PLLTKIQ 433 (542)
Q Consensus 427 ~l~eKI~ 433 (542)
|.++|.+
T Consensus 88 P~eeK~k 94 (341)
T PLN02984 88 PFESKRE 94 (341)
T ss_pred CHHHHhh
Confidence 6777766
No 200
>PRK05672 dnaE2 error-prone DNA polymerase; Validated
Probab=26.18 E-value=3.4e+02 Score=33.63 Aligned_cols=149 Identities=13% Similarity=0.047 Sum_probs=81.4
Q ss_pred CCCCCcEEEe--CCCCCCHHHHHHHHHHHHHcCCCeEE--------EccccccCch----------hHHHHHHHHHHHhc
Q psy7978 353 YLEHPPVTML--IYYTYTPAEWEIIRKAAKQAGAHDAV--------VCENWAKGGA----------GAADLADAVIKATE 412 (542)
Q Consensus 353 ~fGvpvVAiN--~F~tDT~~Ei~~i~~~~~~~G~~~~~--------v~~~~a~GG~----------Ga~~LA~~Vv~a~~ 412 (542)
++|+|+||.| +|..-.|.+..-+.... ..|.. .. -.+.|-+--+ -+++=...+.+.|+
T Consensus 190 ~~~ip~Vat~dv~Y~~~~d~~~~~vl~~i-~~~~~-l~~~~~~~~~~~~~ylks~~Em~~~f~~~~~al~Nt~~Ia~~c~ 267 (1046)
T PRK05672 190 RAGVPLVATGDVHMHHRSRRRLQDAMTAI-RARRS-LAEAGGWLAPNGERHLRSGAEMARLFPDYPEALAETVELAERCA 267 (1046)
T ss_pred HhCCCEEEecCccccCHhhHHHHHHHHHH-hCCCc-cccccccccCCCcCccCCHHHHHHHhhccHHHHHHHHHHHHhhc
Confidence 4899999777 46555555554444432 33421 10 1122222111 22333345666664
Q ss_pred cC---CCC--cccccCCCCCHHHHHHHHH----HHHhcCC-ceecChHHHHHHHHHHHcCCCCCceeEEc-cCCCCCCCC
Q psy7978 413 LK---DKQ--FKYLYDIHDPLLTKIQTVA----REMYGVH-KVDCPQPVLEKLQKLERLGYGRLTVCMAK-TALSLSGDP 481 (542)
Q Consensus 413 ~~---~~~--f~~lY~~~~~l~eKI~~IA----~~IYGA~-~V~~s~~A~~~l~~~e~~G~~~lPVCmAK-TqySlS~dp 481 (542)
-. ... -+|.++...+-.+.++.+| ++-||.. .-+|.+..+.+|+-|.++||..+-..++. .+|+=+++
T Consensus 268 ~~l~~~~~~lP~f~~p~~~~~~~~L~~l~~~gl~~ry~~~~~~~~~~RL~~EL~vI~~~gf~~YFLIV~D~i~~Ak~~g- 346 (1046)
T PRK05672 268 FDLDLLAYEYPDEPVPAGHTPASWLRQLTEAGAARRYGPGIPPKARAQIEHELALIAELGYEGYFLTVHDIVRFARSQG- 346 (1046)
T ss_pred cccccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHHCC-
Confidence 21 101 1234555666677777776 6679763 12466667778889999999999877654 33333322
Q ss_pred CCCCCCCCCceEEeeEEEeecCCceEEEeecccccC
Q psy7978 482 TIKGVVPPDYVLPIHDVYVSAGAGFVVVIAGDISKM 517 (542)
Q Consensus 482 ~~~G~~P~~f~~~vrdv~~~~GAgfiv~~~g~i~tM 517 (542)
..+. -+| ++||-+|++|=.|...
T Consensus 347 -i~vp-GRG-----------SaAGSLVaY~LgIT~V 369 (1046)
T PRK05672 347 -ILCQ-GRG-----------SAANSAVCYALGITEV 369 (1046)
T ss_pred -ceeC-CCC-----------hHHHHHHHHHhCCCcc
Confidence 1111 122 5688888877666543
No 201
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=25.88 E-value=4.5e+02 Score=27.64 Aligned_cols=151 Identities=18% Similarity=0.219 Sum_probs=92.4
Q ss_pred eehhhh--hcCCCCCCCCCCCCCcc------cCccCHHHHhccCCcccccCcccc----CCCCCcE---EEeC-CCCCCH
Q psy7978 306 TVRALK--MHGGGPSVVSGQPLKPE------YTENTRAVLRGEDSFLLYCKLDSQ----YLEHPPV---TMLI-YYTYTP 369 (542)
Q Consensus 306 TvRALK--~HGG~~~~~~g~p~~~~------l~~en~~al~~G~~~~~~~NL~~H----~fGvpvV---AiN~-F~tDT~ 369 (542)
|+..+| --+|+.-...|-|-.+- ....+..||+.|......-+|.+- .-.+|.| ..|- |.-.
T Consensus 33 s~e~i~~L~~~GaD~iELGvPfSDPvADGP~Iq~A~~rAL~~g~t~~~~lel~~~~r~~~~~~Pivlm~Y~Npi~~~G-- 110 (265)
T COG0159 33 SLEIIKTLVEAGADILELGVPFSDPVADGPTIQAAHLRALAAGVTLEDTLELVEEIRAKGVKVPIVLMTYYNPIFNYG-- 110 (265)
T ss_pred HHHHHHHHHhCCCCEEEecCCCCCcCccCHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCCCCEEEEEeccHHHHhh--
Confidence 344444 33555544455544433 345677899999664422233222 2578888 6674 4332
Q ss_pred HHHHHHHHHHHHcCCCeEEEccccccCchhHHHHHHHHHHHhccCCCCcccccCCCCCHHHHHHHHHHHH---------h
Q psy7978 370 AEWEIIRKAAKQAGAHDAVVCENWAKGGAGAADLADAVIKATELKDKQFKYLYDIHDPLLTKIQTVAREM---------Y 440 (542)
Q Consensus 370 ~Ei~~i~~~~~~~G~~~~~v~~~~a~GG~Ga~~LA~~Vv~a~~~~~~~f~~lY~~~~~l~eKI~~IA~~I---------Y 440 (542)
++...+.|++.|+..+.+-+. -.|.++.+.+.|++..-++-||-..+.| .+.+++|++.- +
T Consensus 111 --ie~F~~~~~~~GvdGlivpDL-------P~ee~~~~~~~~~~~gi~~I~lvaPtt~-~~rl~~i~~~a~GFiY~vs~~ 180 (265)
T COG0159 111 --IEKFLRRAKEAGVDGLLVPDL-------PPEESDELLKAAEKHGIDPIFLVAPTTP-DERLKKIAEAASGFIYYVSRM 180 (265)
T ss_pred --HHHHHHHHHHcCCCEEEeCCC-------ChHHHHHHHHHHHHcCCcEEEEeCCCCC-HHHHHHHHHhCCCcEEEEecc
Confidence 334556788999987777765 3677888888887532134556555554 45666666642 5
Q ss_pred cCCceecC--hHHHHHHHHHHHcCCCCCceeE
Q psy7978 441 GVHKVDCP--QPVLEKLQKLERLGYGRLTVCM 470 (542)
Q Consensus 441 GA~~V~~s--~~A~~~l~~~e~~G~~~lPVCm 470 (542)
|..+++-. ....+.++++++. .++|||.
T Consensus 181 GvTG~~~~~~~~~~~~v~~vr~~--~~~Pv~v 210 (265)
T COG0159 181 GVTGARNPVSADVKELVKRVRKY--TDVPVLV 210 (265)
T ss_pred cccCCCcccchhHHHHHHHHHHh--cCCCeEE
Confidence 77666654 3378888888884 5899996
No 202
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=25.67 E-value=3.8e+02 Score=27.60 Aligned_cols=58 Identities=22% Similarity=0.331 Sum_probs=34.3
Q ss_pred CCCCCcE-EEeCCCCCCHHHHHHHHHHHHHcC-CCeEEE---ccccccCchh---HHHHHHHHHHHhcc
Q psy7978 353 YLEHPPV-TMLIYYTYTPAEWEIIRKAAKQAG-AHDAVV---CENWAKGGAG---AADLADAVIKATEL 413 (542)
Q Consensus 353 ~fGvpvV-AiN~F~tDT~~Ei~~i~~~~~~~G-~~~~~v---~~~~a~GG~G---a~~LA~~Vv~a~~~ 413 (542)
+++.|++ -|+-+ +.+++....+.++++| +.-+.+ |-+...||.. -.++...+++++.+
T Consensus 89 ~~~~p~i~si~g~---~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~ 154 (301)
T PRK07259 89 EFDTPIIANVAGS---TEEEYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKE 154 (301)
T ss_pred ccCCcEEEEeccC---CHHHHHHHHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHH
Confidence 4788887 66543 5788888888888888 753334 3343333321 13455666666543
No 203
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=25.34 E-value=7.5e+02 Score=25.37 Aligned_cols=115 Identities=15% Similarity=0.171 Sum_probs=67.2
Q ss_pred CCCCCcE-EEeCCCCCCHHHHHHHHHHHHHcCCCeEE-EccccccCc----hhHHHHHHHHHHHhccCCCCcc---cccC
Q psy7978 353 YLEHPPV-TMLIYYTYTPAEWEIIRKAAKQAGAHDAV-VCENWAKGG----AGAADLADAVIKATELKDKQFK---YLYD 423 (542)
Q Consensus 353 ~fGvpvV-AiN~F~tDT~~Ei~~i~~~~~~~G~~~~~-v~~~~a~GG----~Ga~~LA~~Vv~a~~~~~~~f~---~lY~ 423 (542)
.+|+|+| -+--... +..+++.....+.++|++.+. +..-...+| +|.-+-|-..++.+.+...+|. -.|+
T Consensus 56 ~~g~~~i~Hlt~r~~-n~~~l~~~L~~~~~~Gi~nvL~l~GD~~~~~~~~~~~~f~~a~~Li~~i~~~~~~f~ig~a~~P 134 (272)
T TIGR00676 56 ETGIPTVPHLTCIGA-TREEIREILREYRELGIRHILALRGDPPKGEGTPTPGGFNYASELVEFIRNEFGDFDIGVAAYP 134 (272)
T ss_pred hcCCCeeEEeeecCC-CHHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCCCCCCCCCCHHHHHHHHHHhcCCeeEEEEeCC
Confidence 4788888 4443333 577787777778899997544 455455444 1222334444444433211454 2666
Q ss_pred C----CCCHHHHHHHHHHHH-hcCCc----eecChHHHHHH-HHHHHcCCCCCcee
Q psy7978 424 I----HDPLLTKIQTVAREM-YGVHK----VDCPQPVLEKL-QKLERLGYGRLTVC 469 (542)
Q Consensus 424 ~----~~~l~eKI~~IA~~I-YGA~~----V~~s~~A~~~l-~~~e~~G~~~lPVC 469 (542)
. ..+.++=++.+.+|+ +||+- ..|+.++-.++ +++++.|.+ +||-
T Consensus 135 eghp~~~~~~~~~~~L~~K~~aGA~f~iTQ~~fd~~~~~~~~~~~~~~gi~-~PIi 189 (272)
T TIGR00676 135 EKHPEAPNLEEDIENLKRKVDAGADYAITQLFFDNDDYYRFVDRCRAAGID-VPII 189 (272)
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCCeEeeccccCHHHHHHHHHHHHHcCCC-CCEe
Confidence 5 455666677788888 68853 34666665544 456667753 5663
No 204
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=25.25 E-value=41 Score=29.62 Aligned_cols=35 Identities=17% Similarity=0.132 Sum_probs=26.4
Q ss_pred hhCCEEEEeccCCCcee-----cCcccCCeEEEecccccc
Q psy7978 29 KSADILVVGIGQPEYVK-----GDWIKPGAVVIDCGINSV 63 (542)
Q Consensus 29 k~ADIVIsAvG~p~lI~-----~d~ik~GavVIDVGin~~ 63 (542)
.++|+||.+++-.-... ....++|.+|||++....
T Consensus 64 ~~~DvV~~~~~~~~~~~~~~~~~~~~~~g~~viD~s~~~~ 103 (122)
T smart00859 64 LAVDIVFLALPHGVSKEIAPLLPKAAEAGVKVIDLSSAFR 103 (122)
T ss_pred cCCCEEEEcCCcHHHHHHHHHHHhhhcCCCEEEECCcccc
Confidence 48999999998765433 123589999999998764
No 205
>PRK10799 metal-binding protein; Provisional
Probab=24.75 E-value=27 Score=35.34 Aligned_cols=79 Identities=19% Similarity=0.211 Sum_probs=41.0
Q ss_pred HHHHHHcCCCc----cccccccCceeEechh-hhhhhhcCCCCcEEeehHHHHHhhcccceeeeecCCCCCcccccccCC
Q psy7978 154 NQLAQEIGLHV----SEVSSYGRSKAKISTE-VLDRLKRVQDGKYIILFLKLLLLDFGYTFACVRQPSQGPTFGIKGGAA 228 (542)
Q Consensus 154 ~~ia~~lgl~~----~~l~~yG~~kAKi~~~-~l~~~~~~~~gklilVTa~aL~~~l~~~~~~lRePSlGPvFGiKGGAa 228 (542)
..+|+.||+.. +.+.+||.....++++ +.++++.+-+-+.+ +.++.-+.+++|+.+| |
T Consensus 110 ~~la~~Lgl~~~~~~~~~~~~g~l~~~~s~~~l~~~vk~~l~~~~~-~~~~~~~~~i~rVAi~-------------~--- 172 (247)
T PRK10799 110 AQLAALLGITVMGEIEPLVPWGELTMPVPGLELASWIEARLGRKPL-WCGDTGPEVVQRVAWC-------------T--- 172 (247)
T ss_pred HHHHHHcCCCcccCcCCceeeEECCCCcCHHHHHHHHHHHhCCCeE-EECCCCCCcccEEEEE-------------C---
Confidence 34889999874 2344555554455553 44555543233332 3333222133665555 2
Q ss_pred CCCceeeeeC---cccccccccchh
Q psy7978 229 GGGYSQVIPM---EEFNLHLTGDIH 250 (542)
Q Consensus 229 GGG~sqv~Pm---e~iNLHfTGD~h 250 (542)
|+|.+ .++. ....+=.|||+.
T Consensus 173 GsG~~-~i~~a~~~gaD~~ITGd~k 196 (247)
T PRK10799 173 GGGQS-FIDSAARFGVDAFITGEVS 196 (247)
T ss_pred CchHH-HHHHHHHcCCCEEEECCcc
Confidence 34443 2333 356888999995
No 206
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=24.26 E-value=34 Score=28.56 Aligned_cols=36 Identities=17% Similarity=0.417 Sum_probs=25.6
Q ss_pred CHHHHhhhCCEEEEeccCCCc--eecC--cccCCeEEEec
Q psy7978 23 NIQDVVKSADILVVGIGQPEY--VKGD--WIKPGAVVIDC 58 (542)
Q Consensus 23 nl~~~~k~ADIVIsAvG~p~l--I~~d--~ik~GavVIDV 58 (542)
+..+.+++||+||.|+--..+ +-.+ ...++.+|||+
T Consensus 54 ~~~~~~~~advvilav~p~~~~~v~~~i~~~~~~~~vis~ 93 (96)
T PF03807_consen 54 DNEEAAQEADVVILAVKPQQLPEVLSEIPHLLKGKLVISI 93 (96)
T ss_dssp EHHHHHHHTSEEEE-S-GGGHHHHHHHHHHHHTTSEEEEE
T ss_pred ChHHhhccCCEEEEEECHHHHHHHHHHHhhccCCCEEEEe
Confidence 577888999999999987765 2222 46788888886
No 207
>cd02033 BchX Chlorophyllide reductase converts chlorophylls into bacteriochlorophylls by reducing the chlorin B-ring. This family contains the X subunit of this three-subunit enzyme. Sequence and structure similarity between bchX, protochlorophyllide reductase L subunit (bchL and chlL) and nitrogenase Fe protein (nifH gene) suggest their functional similarity. Members of the BchX family serve as the unique electron donors to their respective catalytic subunits (bchN-bchB, bchY-bchZ and nitrogenase component 1). Mechanistically, they hydrolyze ATP and transfer electrons through a Fe4-S4 cluster.
Probab=24.04 E-value=2.7e+02 Score=29.82 Aligned_cols=85 Identities=9% Similarity=-0.003 Sum_probs=53.4
Q ss_pred CCCCcE--EEeCCCCCCHHHHHHHHHHHHHcCCCeEEEccccccCchhHHHHHHHHHHHhccCCCCcccccCCCCCHHHH
Q psy7978 354 LEHPPV--TMLIYYTYTPAEWEIIRKAAKQAGAHDAVVCENWAKGGAGAADLADAVIKATELKDKQFKYLYDIHDPLLTK 431 (542)
Q Consensus 354 fGvpvV--AiN~F~tDT~~Ei~~i~~~~~~~G~~~~~v~~~~a~GG~Ga~~LA~~Vv~a~~~~~~~f~~lY~~~~~l~eK 431 (542)
+++++. .+|++.. +.+ +.++|++.|.. + +. .+-.-+.|.++..+ .++++..+.++.+.
T Consensus 205 ~~~~i~GlViNr~d~--~~~---ie~~ae~lgi~-v-Lg---------~IP~D~~V~~a~~~----g~~~~~p~s~~a~~ 264 (329)
T cd02033 205 GNVGVAGMVINKDDG--TGE---AQAFAAHAGIP-I-LA---------AIPADEELRRKSAA----YQIVGRPGTTWGPL 264 (329)
T ss_pred CCCCceEEEEeCcCC--cch---HHHHHHHhCCC-E-EE---------ECCCCHHHHHHHHc----CCeecCCCCHHHHH
Confidence 456666 8899754 333 55778888885 4 22 24444566666543 23445455678999
Q ss_pred HHHHHHHHhcCCceecChHHHHHHHHH
Q psy7978 432 IQTVAREMYGVHKVDCPQPVLEKLQKL 458 (542)
Q Consensus 432 I~~IA~~IYGA~~V~~s~~A~~~l~~~ 458 (542)
++.||++|.....+.-.+.-.++|.++
T Consensus 265 f~~LA~~I~~~~~~~~~~~~~~~~~~~ 291 (329)
T cd02033 265 FEQLATNVAEAPPMRPKPLSQDELLGL 291 (329)
T ss_pred HHHHHHHHHHhcCCCCCCCCHHHHHHH
Confidence 999999998766665555555554433
No 208
>PLN02912 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=23.77 E-value=1.9e+02 Score=30.97 Aligned_cols=64 Identities=9% Similarity=0.127 Sum_probs=41.1
Q ss_pred CCCCcEEEeCCCCCCHH-HHHHHHHHHHHcCCCeEEEccccccCchhHHHHHHHHHHHhccCCCCcccccCCCCCHHHHH
Q psy7978 354 LEHPPVTMLIYYTYTPA-EWEIIRKAAKQAGAHDAVVCENWAKGGAGAADLADAVIKATELKDKQFKYLYDIHDPLLTKI 432 (542)
Q Consensus 354 fGvpvVAiN~F~tDT~~-Ei~~i~~~~~~~G~~~~~v~~~~a~GG~Ga~~LA~~Vv~a~~~~~~~f~~lY~~~~~l~eKI 432 (542)
..+|+|-+..|.++..+ ..+.|++.|++.|.+ .+.+| |. ..+|.+++.+++.+ .| +.|+++|.
T Consensus 40 ~~iPvIDls~~~~~~~~~~~~~l~~A~~~~GFf--~v~nH----GI-~~~l~~~~~~~~~~-------FF--~LP~eeK~ 103 (348)
T PLN02912 40 DSIPLIDLRDLHGPNRADIINQFAHACSSYGFF--QIKNH----GV-PEETIKKMMNVARE-------FF--HQSESERV 103 (348)
T ss_pred CCCCeEECcccCCcCHHHHHHHHHHHHHHCCEE--EEEeC----CC-CHHHHHHHHHHHHH-------Hh--cCCHHHHH
Confidence 56999955566443344 468999999999995 56666 22 24677777666532 23 24666666
Q ss_pred H
Q psy7978 433 Q 433 (542)
Q Consensus 433 ~ 433 (542)
+
T Consensus 104 k 104 (348)
T PLN02912 104 K 104 (348)
T ss_pred h
Confidence 6
No 209
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=23.69 E-value=1.6e+02 Score=29.98 Aligned_cols=132 Identities=16% Similarity=0.112 Sum_probs=69.1
Q ss_pred CCcEEEeCCCCCCHHHHHHHHHHHHHcCCCeEEEccccccCchhHHHHHHHHHHH-hcc-CCCCcccccCCCCCHHHHHH
Q psy7978 356 HPPVTMLIYYTYTPAEWEIIRKAAKQAGAHDAVVCENWAKGGAGAADLADAVIKA-TEL-KDKQFKYLYDIHDPLLTKIQ 433 (542)
Q Consensus 356 vpvVAiN~F~tDT~~Ei~~i~~~~~~~G~~~~~v~~~~a~GG~Ga~~LA~~Vv~a-~~~-~~~~f~~lY~~~~~l~eKI~ 433 (542)
+++|..+.-....++.-+.+.+.|++.|.. +.+...|. || .|+-+..-.- .+. .-...++=..+..+..++.-
T Consensus 86 k~Vvi~s~~Al~d~~~~~~L~~~A~~~g~~-l~v~sga~-gg---~d~l~~~~~g~~~~v~~~~~k~p~~~~~~~~~~~~ 160 (265)
T PRK13303 86 IDCAVISVGALADEALRERLEQAAEAGGAR-LHLLSGAI-GG---IDALAAAKEGGLDEVTYTGRKPPKSWRGTPAEQLC 160 (265)
T ss_pred CCEEEeChHHhcCHHHHHHHHHHHHHCCCE-EEEeChHh-hC---HHHHHHHHhCCceEEEEEEecChhHhCcChhHhcc
Confidence 677766654322233347788999999985 66644444 44 4433322111 000 00012222233333333310
Q ss_pred HHHHHHhcCCceecChHHHHHHHHH------------HHcCCCCCceeEEccCCCCCCCCCCCCCCCCCceEEeeEEEee
Q psy7978 434 TVAREMYGVHKVDCPQPVLEKLQKL------------ERLGYGRLTVCMAKTALSLSGDPTIKGVVPPDYVLPIHDVYVS 501 (542)
Q Consensus 434 ~IA~~IYGA~~V~~s~~A~~~l~~~------------e~~G~~~lPVCmAKTqySlS~dp~~~G~~P~~f~~~vrdv~~~ 501 (542)
. -..+ -...+.|+-.|++....| ...||+ +|+-.+-.||...+ ++.+|++.
T Consensus 161 d-l~~~-~~~~~~f~G~a~ea~~~~p~n~nvaaa~~la~~g~d-------~~~v~~~adp~~~~--------n~h~i~~~ 223 (265)
T PRK13303 161 D-LDAL-TEPTVIFEGSAREAARLFPKNANVAATVALAGLGLD-------RTRVELIADPAVTR--------NVHEIEAR 223 (265)
T ss_pred c-cccc-ccCeEEEEeCHHHHHHHCCchhhHHHHHHHhccCcc-------ceEEEEEECCCCCC--------ceEEEEEE
Confidence 0 0001 124577888888777753 234554 57777778998644 57788888
Q ss_pred cCCceEEE
Q psy7978 502 AGAGFVVV 509 (542)
Q Consensus 502 ~GAgfiv~ 509 (542)
...|-...
T Consensus 224 g~~g~~~~ 231 (265)
T PRK13303 224 GAFGEFEF 231 (265)
T ss_pred eccEEEEE
Confidence 87776544
No 210
>KOG3349|consensus
Probab=23.31 E-value=76 Score=31.04 Aligned_cols=29 Identities=14% Similarity=0.312 Sum_probs=23.1
Q ss_pred eecCCCCCHHHHhhhCCEEEEeccCCCce
Q psy7978 16 PSMSKTKNIQDVVKSADILVVGIGQPEYV 44 (542)
Q Consensus 16 icHs~T~nl~~~~k~ADIVIsAvG~p~lI 44 (542)
.-..+.+++++.++.||+||+=+|.-..+
T Consensus 66 d~y~f~psl~e~I~~AdlVIsHAGaGS~l 94 (170)
T KOG3349|consen 66 DGYDFSPSLTEDIRSADLVISHAGAGSCL 94 (170)
T ss_pred EEEecCccHHHHHhhccEEEecCCcchHH
Confidence 34456789999999999999998876543
No 211
>PRK10660 tilS tRNA(Ile)-lysidine synthetase; Provisional
Probab=23.19 E-value=1.5e+02 Score=32.80 Aligned_cols=49 Identities=12% Similarity=-0.029 Sum_probs=30.9
Q ss_pred CCCcE--EEeC-CCCCCHHHHHHHHHHHHHcCCCeEEEcc-ccccCchhHHHHH
Q psy7978 355 EHPPV--TMLI-YYTYTPAEWEIIRKAAKQAGAHDAVVCE-NWAKGGAGAADLA 404 (542)
Q Consensus 355 GvpvV--AiN~-F~tDT~~Ei~~i~~~~~~~G~~~~~v~~-~~a~GG~Ga~~LA 404 (542)
|.+++ -||+ +..+++++.+.++++|++.|+. +.+-+ .+...|.+-++.|
T Consensus 44 ~~~l~a~hvnhglr~~s~~~~~~~~~~~~~l~i~-~~~~~~~~~~~~~~~e~~A 96 (436)
T PRK10660 44 GVTLRAIHVHHGLSPNADSWVKHCEQVCQQWQVP-LVVERVQLDQRGLGIEAAA 96 (436)
T ss_pred CCeEEEEEEeCCCCcchHHHHHHHHHHHHHcCCc-EEEEEEeccCCCCCHHHHH
Confidence 44444 8886 5567777789999999999996 55432 1213344444444
No 212
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=23.04 E-value=58 Score=32.56 Aligned_cols=38 Identities=26% Similarity=0.485 Sum_probs=27.9
Q ss_pred CCHHHHhhhCCEEEEeccCCC----ceecCcccCCeEEEeccc
Q psy7978 22 KNIQDVVKSADILVVGIGQPE----YVKGDWIKPGAVVIDCGI 60 (542)
Q Consensus 22 ~nl~~~~k~ADIVIsAvG~p~----lI~~d~ik~GavVIDVGi 60 (542)
.+..+.++++|+||.|+. |. ++..-++++|.+||++.-
T Consensus 53 ~~~~~~~~~aDvVilav~-p~~~~~vl~~l~~~~~~~vis~~a 94 (258)
T PRK06476 53 KDNQAVVDRSDVVFLAVR-PQIAEEVLRALRFRPGQTVISVIA 94 (258)
T ss_pred CCHHHHHHhCCEEEEEeC-HHHHHHHHHHhccCCCCEEEEECC
Confidence 467777899999999999 53 233334678999988653
No 213
>PF03599 CdhD: CO dehydrogenase/acetyl-CoA synthase delta subunit; InterPro: IPR016041 This entry represents a conserved region predicted to form a TIM alpha/beta barrel, and is found in the delta subunit of a number of CO dehydrogenase/acetyl-CoA synthase enzymes.; PDB: 2H9A_B 2YCL_B 4DJF_E 4DJD_C 4DJE_C.
Probab=22.81 E-value=2.3e+02 Score=31.31 Aligned_cols=123 Identities=16% Similarity=0.225 Sum_probs=75.2
Q ss_pred cccCccCHHHHhccCCcccccCccc-----c---CCCCCcEEEeCCCCCC-HHHHHHHHHHHHHcCCCeEEEccccccCc
Q psy7978 327 PEYTENTRAVLRGEDSFLLYCKLDS-----Q---YLEHPPVTMLIYYTYT-PAEWEIIRKAAKQAGAHDAVVCENWAKGG 397 (542)
Q Consensus 327 ~~l~~en~~al~~G~~~~~~~NL~~-----H---~fGvpvVAiN~F~tDT-~~Ei~~i~~~~~~~G~~~~~v~~~~a~GG 397 (542)
+.+.++.++++.+- +..+.. - .|++-.||+..=.+|- ++=.+.+++.+++.++. .+++..
T Consensus 38 D~~~e~~~~~~~~~-----~~~v~~dwak~rVge~~~~D~Ialr~~S~DPae~fa~~vk~V~~a~~~P-LIL~~~----- 106 (386)
T PF03599_consen 38 DTMPEEEIEAKVER-----IKDVQFDWAKKRVGEFLGADMIALRLESGDPAEEFAKAVKKVAEAVDVP-LILCGC----- 106 (386)
T ss_dssp SSS-HCHHHHHHHH-----HTTTCCEHHHHCCCEEEE-SEEEEE-GGGSTHHHHHHHHHHHHHC-SSE-EEEESS-----
T ss_pred CCCChhhHHHHHHH-----HhhhhhhhhhhhhhhhccccEEEEEecCCChHHHHHHHHHHHHHhcCCC-EEEEeC-----
Confidence 44455566677666 444433 1 3888888887766665 44455666666666775 777644
Q ss_pred hhHHHHHHHHHHHhccCCCCcccccCCCCCHHHHHHHHHHHHhcCCceecChHHH---HHHH-HHHHcCCCCC
Q psy7978 398 AGAADLADAVIKATELKDKQFKYLYDIHDPLLTKIQTVAREMYGVHKVDCPQPVL---EKLQ-KLERLGYGRL 466 (542)
Q Consensus 398 ~Ga~~LA~~Vv~a~~~~~~~f~~lY~~~~~l~eKI~~IA~~IYGA~~V~~s~~A~---~~l~-~~e~~G~~~l 466 (542)
-.+..+++.++|..+. -.||.-+..=.+.+-.+|++ ||-.=+.+++.=. +||. +++++|++++
T Consensus 107 --D~evl~aale~~~~~k---pLL~aAt~eNyk~m~~lA~~-y~~pl~v~sp~Dln~lk~Ln~~l~~~Gv~dI 173 (386)
T PF03599_consen 107 --DPEVLKAALEACAGKK---PLLYAATEENYKAMAALAKE-YGHPLIVSSPIDLNLLKQLNIKLTELGVKDI 173 (386)
T ss_dssp --HHHHHHHHHHHTTTS-----EEEEEBTTTHHHHHHHHHH-CT-EEEEE-SSCHHHHHHHHHHHHTTT-GGE
T ss_pred --CHHHHHHHHHHhCcCC---cEEeEcCHHHHHHHHHHHHH-cCCeEEEEecccHHHHHHHHHHHHhcCcccE
Confidence 4677888899986432 24887777778889999976 9987777774333 3333 5667888665
No 214
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=22.60 E-value=76 Score=33.55 Aligned_cols=68 Identities=10% Similarity=0.004 Sum_probs=40.9
Q ss_pred CCCCCcE-EEeCC-CCCCHHHHHHHHHHHHHcCCCeEEEccccccCchhHHHHHHHHHHHhccCCCCcccccCCCCCHHH
Q psy7978 353 YLEHPPV-TMLIY-YTYTPAEWEIIRKAAKQAGAHDAVVCENWAKGGAGAADLADAVIKATELKDKQFKYLYDIHDPLLT 430 (542)
Q Consensus 353 ~fGvpvV-AiN~F-~tDT~~Ei~~i~~~~~~~G~~~~~v~~~~a~GG~Ga~~LA~~Vv~a~~~~~~~f~~lY~~~~~l~e 430 (542)
.||+|++ .|||+ +.|+ || +++|++.|+. ....=-|. +.+.++... -.++-..+..-.+
T Consensus 212 ~f~ip~~iViNr~~~g~s--~i---e~~~~e~gi~-il~~IPyd----------~~i~~~~~~----g~~~~~~~~k~~~ 271 (284)
T COG1149 212 HFGIPTGIVINRYNLGDS--EI---EEYCEEEGIP-ILGEIPYD----------KDIPEAYVN----GEPFVEPDSKEAE 271 (284)
T ss_pred HhCCceEEEEecCCCCch--HH---HHHHHHcCCC-eeEECCcc----------hhHHHHHhC----CCccccccchHHH
Confidence 5999999 99999 2333 54 6999999995 54332332 344444432 1222224455566
Q ss_pred HHHHHHHHHh
Q psy7978 431 KIQTVAREMY 440 (542)
Q Consensus 431 KI~~IA~~IY 440 (542)
++..++.++|
T Consensus 272 ~~~~~~~~~~ 281 (284)
T COG1149 272 AILEEAEKLK 281 (284)
T ss_pred HHHHHHHHHH
Confidence 6666666665
No 215
>PF07287 DUF1446: Protein of unknown function (DUF1446); InterPro: IPR010839 This family consists of several bacterial and plant proteins of around 400 residues in length. The function of this family is unknown.
Probab=22.57 E-value=1.4e+02 Score=32.46 Aligned_cols=66 Identities=20% Similarity=0.192 Sum_probs=39.1
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCeEEEccccccCchhHHHHHHHHHHHhccCCCCcccccCCCCCHHHHHHH
Q psy7978 364 YYTYTPAEWEIIRKAAKQAGAHDAVVCENWAKGGAGAADLADAVIKATELKDKQFKYLYDIHDPLLTKIQT 434 (542)
Q Consensus 364 F~tDT~~Ei~~i~~~~~~~G~~~~~v~~~~a~GG~Ga~~LA~~Vv~a~~~~~~~f~~lY~~~~~l~eKI~~ 434 (542)
|..|=.+.++.+...|++.|++ + +++. ||.-...+|++|.+.+++..-+||.-|=..+.+.+.|+.
T Consensus 52 Y~~~~~~~L~~~L~~~~~~gIk-v-I~Na---Gg~np~~~a~~v~eia~e~Gl~lkvA~V~gDd~~~~v~~ 117 (362)
T PF07287_consen 52 YAPDFVRDLRPLLPAAAEKGIK-V-ITNA---GGLNPAGCADIVREIARELGLSLKVAVVYGDDLKDEVKE 117 (362)
T ss_pred chHHHHHHHHHHHHHHHhCCCC-E-EEeC---CCCCHHHHHHHHHHHHHhcCCCeeEEEEECccchHhHHH
Confidence 5555566777777888888885 4 4443 555555577777777765322466544434444444443
No 216
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=22.09 E-value=74 Score=32.79 Aligned_cols=50 Identities=12% Similarity=0.219 Sum_probs=33.0
Q ss_pred CCCe-eecCCCCCHHHHhhh---CCEEEEeccCCCcee--cCcccCCeEEEecccc
Q psy7978 12 VLAN-PSMSKTKNIQDVVKS---ADILVVGIGQPEYVK--GDWIKPGAVVIDCGIN 61 (542)
Q Consensus 12 ~~AT-icHs~T~nl~~~~k~---ADIVIsAvG~p~lI~--~d~ik~GavVIDVGin 61 (542)
.||+ +....+.++.+.++. .|+||-++|.+..+. -+.+++|..++.+|..
T Consensus 213 lGa~~vi~~~~~~~~~~~~~~g~~D~vid~~G~~~~~~~~~~~l~~~G~iv~~G~~ 268 (343)
T PRK09880 213 MGADKLVNPQNDDLDHYKAEKGYFDVSFEVSGHPSSINTCLEVTRAKGVMVQVGMG 268 (343)
T ss_pred cCCcEEecCCcccHHHHhccCCCCCEEEECCCCHHHHHHHHHHhhcCCEEEEEccC
Confidence 3555 444444455554432 799999999875432 4678899999998864
No 217
>PLN03129 NADP-dependent malic enzyme; Provisional
Probab=21.98 E-value=70 Score=36.96 Aligned_cols=38 Identities=11% Similarity=0.193 Sum_probs=33.4
Q ss_pred CCHHHHhhh--CCEEEEeccCCCceecCccc------CCeEEEecc
Q psy7978 22 KNIQDVVKS--ADILVVGIGQPEYVKGDWIK------PGAVVIDCG 59 (542)
Q Consensus 22 ~nl~~~~k~--ADIVIsAvG~p~lI~~d~ik------~GavVIDVG 59 (542)
.+|.+.++. +||+|-+.|+|+.++++||| +..+|+=..
T Consensus 391 ~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~~rPIIFaLS 436 (581)
T PLN03129 391 ASLLEAVKAIKPTVLIGLSGVGGTFTKEVLEAMASLNERPIIFALS 436 (581)
T ss_pred CCHHHHHhccCCCEEEEecCCCCCCCHHHHHHHHhcCCCCEEEECC
Confidence 479999999 99999999999999999998 677776554
No 218
>PRK08445 hypothetical protein; Provisional
Probab=21.40 E-value=1.8e+02 Score=31.12 Aligned_cols=16 Identities=25% Similarity=0.436 Sum_probs=13.0
Q ss_pred HHHHHHHHHcCCCCCc
Q psy7978 452 LEKLQKLERLGYGRLT 467 (542)
Q Consensus 452 ~~~l~~~e~~G~~~lP 467 (542)
+++|+++.+.|.+.+|
T Consensus 144 ~e~L~~LkeAGl~~~~ 159 (348)
T PRK08445 144 KEVLERLQAKGLSSIP 159 (348)
T ss_pred HHHHHHHHHcCCCCCC
Confidence 5688888888888777
No 219
>PLN03139 formate dehydrogenase; Provisional
Probab=21.34 E-value=2e+02 Score=31.57 Aligned_cols=80 Identities=16% Similarity=0.246 Sum_probs=47.3
Q ss_pred HHHHHhCCCe-eecCCC-C---CHHHHhhhCCEEEEeccCCCceecCcccCC---eEEEeccccccCCCccCCCCeeeec
Q psy7978 6 QTFWLWVLAN-PSMSKT-K---NIQDVVKSADILVVGIGQPEYVKGDWIKPG---AVVIDCGINSVPDASKASGQKLVGD 77 (542)
Q Consensus 6 a~LL~~~~AT-icHs~T-~---nl~~~~k~ADIVIsAvG~p~lI~~d~ik~G---avVIDVGin~~~d~~~~~~~kl~GD 77 (542)
...|.+.+.+ +..+.. . .+.+.++.|||+|+....|..++++.+... .+|.=.|+-. | .
T Consensus 68 ~~~l~~~g~~~v~~~~~~~~~~~~~~~l~dadili~~~~~~~~~~~e~l~~ap~LK~I~~~g~G~--D-----------~ 134 (386)
T PLN03139 68 RDWLESQGHQYIVTDDKEGPDCELEKHIPDLHVLITTPFHPAYVTAERIKKAKNLELLLTAGIGS--D-----------H 134 (386)
T ss_pred HHHHHhcCCeEEEeCCCCCCHHHHHHHhCCCeEEEEcCccCCCCCHHHHhhCCCccEEEECCccc--c-----------c
Confidence 3456666777 332221 1 457788999999985444555777766432 2444344332 1 2
Q ss_pred cccccccccceEeecCCCCcc
Q psy7978 78 VQYAEAKNVASWITPVPGGVG 98 (542)
Q Consensus 78 Vdf~~v~~~a~~iTPVPGGVG 98 (542)
+|.+.+.++-..+|-+||.-.
T Consensus 135 iDl~aa~~~gI~V~n~~g~na 155 (386)
T PLN03139 135 IDLPAAAAAGLTVAEVTGSNV 155 (386)
T ss_pred cCHHHHHHCCeEEEECCCcCc
Confidence 566677777778888887433
No 220
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=21.24 E-value=4.9e+02 Score=28.43 Aligned_cols=43 Identities=14% Similarity=0.115 Sum_probs=24.3
Q ss_pred ccCccccCCCCCcEEEeCCCCCCHHHHHHHHHHHHHcCCCeEEEcccc
Q psy7978 346 YCKLDSQYLEHPPVTMLIYYTYTPAEWEIIRKAAKQAGAHDAVVCENW 393 (542)
Q Consensus 346 ~~NL~~H~fGvpvVAiN~F~tDT~~Ei~~i~~~~~~~G~~~~~v~~~~ 393 (542)
|.|=.++.||+|+|+-|- .|=|++|++ .+..+.|.+ .++..++
T Consensus 37 ~~~~~~~~~giPii~AnM-dTV~~~~mA---~~la~~g~~-~~iHk~~ 79 (346)
T PRK05096 37 FKHSGQSWSGVPIIAANM-DTVGTFEMA---KALASFDIL-TAVHKHY 79 (346)
T ss_pred eecccccccCCceEecCC-CccccHHHH---HHHHHCCCe-EEEecCC
Confidence 334445579999996662 233455544 233346665 5666664
No 221
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=20.90 E-value=1.3e+02 Score=31.13 Aligned_cols=97 Identities=18% Similarity=0.100 Sum_probs=55.2
Q ss_pred chHHHHHHHhCCCe--eecCCCCC----HHH--------H--hhhCCEEEEeccC-----CC----ceecCcccCCeEEE
Q psy7978 2 WSSLQTFWLWVLAN--PSMSKTKN----IQD--------V--VKSADILVVGIGQ-----PE----YVKGDWIKPGAVVI 56 (542)
Q Consensus 2 gkPLa~LL~~~~AT--icHs~T~n----l~~--------~--~k~ADIVIsAvG~-----p~----lI~~d~ik~GavVI 56 (542)
+|-++.-|.+.|+. .+-.+|.+ |.+ . ...+|+||.|+.. ++ -+..++++++.+|+
T Consensus 134 arAi~~aL~~~g~~~i~i~nR~~~~a~~la~~~~~~~~~~~~~~~~dlvINaTp~Gm~~~~~~~~~pi~~~~l~~~~~v~ 213 (272)
T PRK12550 134 AKAVAAALRDAGFTDGTIVARNEKTGKALAELYGYEWRPDLGGIEADILVNVTPIGMAGGPEADKLAFPEAEIDAASVVF 213 (272)
T ss_pred HHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhCCcchhhcccccCCEEEECCccccCCCCccccCCCCHHHcCCCCEEE
Confidence 45667777788876 33334421 211 1 1358999999742 11 26778899999999
Q ss_pred eccccccCCCccCCCCeeeeccccccccccceEeecCCCCcchhhHHHHHHhHHHHHHHHHh
Q psy7978 57 DCGINSVPDASKASGQKLVGDVQYAEAKNVASWITPVPGGVGPMTVAMLMNNTVLSAERYID 118 (542)
Q Consensus 57 DVGin~~~d~~~~~~~kl~GDVdf~~v~~~a~~iTPVPGGVGpmTvamL~~N~v~aa~~~~~ 118 (542)
|+=.+..+. .+. ..++ ..++ .-+ .| .-||+.+-+.+.+.+.+
T Consensus 214 D~vY~P~~T-------~ll-----~~A~-~~G~-~~i-~G-----l~MLi~Qa~~~f~lwtg 255 (272)
T PRK12550 214 DVVALPAET-------PLI-----RYAR-ARGK-TVI-TG-----AEVIALQAVEQFVLYTG 255 (272)
T ss_pred EeecCCccC-------HHH-----HHHH-HCcC-eEe-CC-----HHHHHHHHHHHHHHHhC
Confidence 987665321 111 1222 2222 222 23 56888888877766554
No 222
>COG3142 CutC Uncharacterized protein involved in copper resistance [Inorganic ion transport and metabolism]
Probab=20.87 E-value=5.3e+02 Score=26.82 Aligned_cols=103 Identities=19% Similarity=0.234 Sum_probs=71.1
Q ss_pred CCcccccCcccc--------------CCCCCcE-EEe----CCCCCCHHHHHHHHH---HHHHcCCCeEEEccccccCch
Q psy7978 341 DSFLLYCKLDSQ--------------YLEHPPV-TML----IYYTYTPAEWEIIRK---AAKQAGAHDAVVCENWAKGGA 398 (542)
Q Consensus 341 ~~~~~~~NL~~H--------------~fGvpvV-AiN----~F~tDT~~Ei~~i~~---~~~~~G~~~~~v~~~~a~GG~ 398 (542)
|-+|||+||.-- .+.+|+- -|- -|- -++.|++..++ .++++|+. -+|-..-...|.
T Consensus 23 dRiELC~~La~GG~TPSyG~~k~a~~~~~ipv~~MIRPRgGdFv-Y~~~E~~iM~~DI~~~~~lG~~-GVV~G~lt~dg~ 100 (241)
T COG3142 23 DRIELCDALAEGGLTPSYGVIKEAVELSKIPVYVMIRPRGGDFV-YSDDELEIMLEDIRLARELGVQ-GVVLGALTADGN 100 (241)
T ss_pred ceeehhhccccCCCCCCHHHHHHHHhhcCCceEEEEecCCCCcc-cChHHHHHHHHHHHHHHHcCCC-cEEEeeecCCCc
Confidence 347788888765 3778877 443 142 25677766665 68899996 667667777777
Q ss_pred hHHHHHHHHHHHhcc-CCCCcccccCCCCCHHHHHHHHHHHHhcCCceecC
Q psy7978 399 GAADLADAVIKATEL-KDKQFKYLYDIHDPLLTKIQTVAREMYGVHKVDCP 448 (542)
Q Consensus 399 Ga~~LA~~Vv~a~~~-~~~~f~~lY~~~~~l~eKI~~IA~~IYGA~~V~~s 448 (542)
=-.++-+++++++.. +- .||..+|.-..-.+-|+.++. +|-..|==|
T Consensus 101 iD~~~le~Li~aA~gL~v-TFHrAFD~~~d~~~ale~li~--~Gv~RILTs 148 (241)
T COG3142 101 IDMPRLEKLIEAAGGLGV-TFHRAFDECPDPLEALEQLIE--LGVERILTS 148 (241)
T ss_pred cCHHHHHHHHHHccCCce-eeehhhhhcCCHHHHHHHHHH--CCCcEEecC
Confidence 777888999999864 32 588888877667777777766 665555443
No 223
>TIGR03855 NAD_NadX aspartate dehydrogenase. Members of this protein family are L-aspartate dehydrogenase, as shown for the NADP-dependent enzyme TM_1643 of Thermotoga maritima. Members lack homology to NadB, the aspartate oxidase (EC 1.4.3.16) of most mesophilic bacteria (described by TIGR00551), which this enzyme replaces in the generation of oxaloacetate from aspartate for the NAD biosynthetic pathway. All members of the seed alignment are found adjacent to other genes of NAD biosynthesis, although other uses of L-aspartate dehydrogenase may occur.
Probab=20.66 E-value=2.8e+02 Score=28.12 Aligned_cols=145 Identities=19% Similarity=0.203 Sum_probs=86.0
Q ss_pred CCCEEEEEeeehhhhhcCCCCCCCCCCCCCcccCccCHHHHhccCCcccccCccccCCCCCcEEEeCCCCCCHHHHHHHH
Q psy7978 297 IPDAVVLVTTVRALKMHGGGPSVVSGQPLKPEYTENTRAVLRGEDSFLLYCKLDSQYLEHPPVTMLIYYTYTPAEWEIIR 376 (542)
Q Consensus 297 ~PdavVlVATvRALK~HGG~~~~~~g~p~~~~l~~en~~al~~G~~~~~~~NL~~H~fGvpvVAiN~F~tDT~~Ei~~i~ 376 (542)
.||+||+.+...+..-|+ ..+|+.| ++++++=-..-++.++.+.+.
T Consensus 37 ~vDaVviatp~~~H~e~a-------------------~~aL~aG---------------khVl~~s~gAlad~e~~~~l~ 82 (229)
T TIGR03855 37 DVDIVVEAASQEAVKEYA-------------------EKILKNG---------------KDLLIMSVGALADRELRERLR 82 (229)
T ss_pred CCCEEEECCChHHHHHHH-------------------HHHHHCC---------------CCEEEECCcccCCHHHHHHHH
Confidence 489888888765554443 3677888 444443223334678889999
Q ss_pred HHHHHcCCCeEEEccccccCchhHHHHHHHHHHHhccCCCCcccccCCC---CCHHHHHHHHHHHHhcCCceecChHHHH
Q psy7978 377 KAAKQAGAHDAVVCENWAKGGAGAADLADAVIKATELKDKQFKYLYDIH---DPLLTKIQTVAREMYGVHKVDCPQPVLE 453 (542)
Q Consensus 377 ~~~~~~G~~~~~v~~~~a~GG~Ga~~LA~~Vv~a~~~~~~~f~~lY~~~---~~l~eKI~~IA~~IYGA~~V~~s~~A~~ 453 (542)
+.|++.|.. +-+.. |++..-+.+ ++.+-.. --+..|... .+++. --....+.|+-.|++
T Consensus 83 ~aA~~~g~~-l~i~s-------Gai~g~d~l-~a~~ig~-~~~V~i~~~k~p~~~~~--------~~~~~~~~f~G~a~e 144 (229)
T TIGR03855 83 EVARSSGRK-VYIPS-------GAIGGLDAL-KAASLGR-IERVVLTTTKPPASLGR--------DIKEPTTIFEGSASE 144 (229)
T ss_pred HHHHhcCCE-EEECh-------HHHHHHHHH-HhcccCC-ceEEEEEEecChHHhcC--------CCCCCEEEEEecHHH
Confidence 999999996 55552 444444444 3332111 111222222 22221 112356889999998
Q ss_pred HHHHHHHc-----------CCCCCceeEEccCCCCCCCCCCCCCCCCCceEEeeEEEeecCCceEEE
Q psy7978 454 KLQKLERL-----------GYGRLTVCMAKTALSLSGDPTIKGVVPPDYVLPIHDVYVSAGAGFVVV 509 (542)
Q Consensus 454 ~l~~~e~~-----------G~~~lPVCmAKTqySlS~dp~~~G~~P~~f~~~vrdv~~~~GAgfiv~ 509 (542)
-+++|=+. ||+ |+-.+--||.+.+ ++.+|.+..-.|-...
T Consensus 145 a~~~fP~n~Nva~a~alA~g~d--------~~v~i~adp~~~~--------n~h~i~~~g~~g~~~~ 195 (229)
T TIGR03855 145 AIKLFPANINVAATLSLAAGFD--------AKVEIVADPEADR--------NIHEIFVESDFGEMEI 195 (229)
T ss_pred HHHHCCchHHHHHHHHHhcCCC--------cEEEEEEcCCCCC--------cEEEEEEEeccEEEEE
Confidence 88864321 554 7788888998644 5777888777776543
No 224
>KOG3361|consensus
Probab=20.57 E-value=54 Score=31.29 Aligned_cols=42 Identities=31% Similarity=0.537 Sum_probs=30.7
Q ss_pred CCCCCCCCCCCCceEEeeEEEeecCCceEEE-eecccccCCCCCCCCceeeeeeeCCCCeee
Q psy7978 479 GDPTIKGVVPPDYVLPIHDVYVSAGAGFVVV-IAGDISKMPGLGTRPSIYDIDIDTRTGEIE 539 (542)
Q Consensus 479 ~dp~~~G~~P~~f~~~vrdv~~~~GAgfiv~-~~g~i~tMPGLp~~Paa~~idvd~~~g~i~ 539 (542)
++|.-.|.++++ -.+.|-|+|-+ -|||+|. ..|-|| ++|.|+
T Consensus 38 ~nPRNVGSldK~--------dpnVGtGlVGAPACGDVMk----------LqIkvd-~~g~I~ 80 (157)
T KOG3361|consen 38 ENPRNVGSLDKN--------DPNVGTGLVGAPACGDVMK----------LQIKVD-DSGVIE 80 (157)
T ss_pred cCccccCccCCC--------CCCcccccccCccccceee----------EEEEEC-CCCcEE
Confidence 366666664333 24678888876 9999996 479999 699986
No 225
>cd01828 sialate_O-acetylesterase_like2 sialate_O-acetylesterase_like subfamily of the SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=20.38 E-value=4.5e+02 Score=23.83 Aligned_cols=67 Identities=13% Similarity=0.135 Sum_probs=39.5
Q ss_pred CCCCEEEEEeeehhhhhcCCCCCCCCCCCCCcccCccCHHHHhccCCcccccCcccc----CCCCCcEEEeCCCC-----
Q psy7978 296 KIPDAVVLVTTVRALKMHGGGPSVVSGQPLKPEYTENTRAVLRGEDSFLLYCKLDSQ----YLEHPPVTMLIYYT----- 366 (542)
Q Consensus 296 l~PdavVlVATvRALK~HGG~~~~~~g~p~~~~l~~en~~al~~G~~~~~~~NL~~H----~fGvpvVAiN~F~t----- 366 (542)
.+||.|||-. |... -....+.+..+++ +.+|.+. .-+.+++.+.-.+.
T Consensus 47 ~~pd~vvl~~---------G~ND---------~~~~~~~~~~~~~-----l~~li~~~~~~~~~~~vi~~~~~p~~~~~~ 103 (169)
T cd01828 47 LQPKAIFIMI---------GIND---------LAQGTSDEDIVAN-----YRTILEKLRKHFPNIKIVVQSILPVGELKS 103 (169)
T ss_pred cCCCEEEEEe---------eccC---------CCCCCCHHHHHHH-----HHHHHHHHHHHCCCCeEEEEecCCcCccCc
Confidence 5799888855 4331 1112355666777 6666665 25667665554444
Q ss_pred CCHHH----HHHHHHHHHHcCCC
Q psy7978 367 YTPAE----WEIIRKAAKQAGAH 385 (542)
Q Consensus 367 DT~~E----i~~i~~~~~~~G~~ 385 (542)
...++ -+.+++.|++.|+.
T Consensus 104 ~~~~~~~~~n~~l~~~a~~~~~~ 126 (169)
T cd01828 104 IPNEQIEELNRQLAQLAQQEGVT 126 (169)
T ss_pred CCHHHHHHHHHHHHHHHHHCCCE
Confidence 23443 44577888888884
No 226
>PF11432 DUF3197: Protein of unknown function (DUF3197); InterPro: IPR024443 This domain, whose function is unknown, is found in bacterial proteins.; PDB: 1WN9_A 1WNA_A.
Probab=20.36 E-value=20 Score=32.74 Aligned_cols=35 Identities=26% Similarity=0.402 Sum_probs=22.4
Q ss_pred CCCcEEeehH-H---------HHHhhc-ccceeeeecCCCCCccccccc
Q psy7978 189 QDGKYIILFL-K---------LLLLDF-GYTFACVRQPSQGPTFGIKGG 226 (542)
Q Consensus 189 ~~gklilVTa-~---------aL~~~l-~~~~~~lRePSlGPvFGiKGG 226 (542)
|.+|++|||- | .|- |. |+.+ |-+|-.||-||--|-
T Consensus 14 p~~~v~liTDwQd~R~~ARYa~ll-~~gk~~l--lt~dAFGPafG~~G~ 59 (113)
T PF11432_consen 14 PEAKVYLITDWQDQRPQARYALLL-RGGKEPL--LTPDAFGPAFGPEGE 59 (113)
T ss_dssp TT-EEEEEEE--SSCCC--EEEEE-E-SS-EE--EEEEEESTTS-TTHH
T ss_pred CCceEEEEeccccchhhhhhhhhe-ecCCccc--ccccccCcccCccHH
Confidence 7799999998 2 232 44 5555 668899999997664
No 227
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=20.24 E-value=6.2e+02 Score=25.50 Aligned_cols=79 Identities=18% Similarity=0.012 Sum_probs=44.5
Q ss_pred CCCCcE-EEeCCCCCCHHH-HHHHHHHHHHcCCCeEEEccccccCchhHHHHHHHHHHHhccCCCCcccccCCCCCHHHH
Q psy7978 354 LEHPPV-TMLIYYTYTPAE-WEIIRKAAKQAGAHDAVVCENWAKGGAGAADLADAVIKATELKDKQFKYLYDIHDPLLTK 431 (542)
Q Consensus 354 fGvpvV-AiN~F~tDT~~E-i~~i~~~~~~~G~~~~~v~~~~a~GG~Ga~~LA~~Vv~a~~~~~~~f~~lY~~~~~l~eK 431 (542)
++.|++ .+|+-..-..++ .+.+.+++...+... +-..=++-|.|-.+|.+.+.+.+.. . .++|+.++--...
T Consensus 106 ~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~--v~~iSA~~g~gi~~L~~~l~~~l~~-~---~~~~~~~~~t~~~ 179 (270)
T TIGR00436 106 LKRPVVLTRNKLDNKFKDKLLPLIDKYAILEDFKD--IVPISALTGDNTSFLAAFIEVHLPE-G---PFRYPEDYVTDQP 179 (270)
T ss_pred cCCCEEEEEECeeCCCHHHHHHHHHHHHhhcCCCc--eEEEecCCCCCHHHHHHHHHHhCCC-C---CCCCCCcccCCCC
Confidence 578999 999854322333 445555655444321 2223356789999999998887732 2 2356655433333
Q ss_pred HHHHHHH
Q psy7978 432 IQTVARE 438 (542)
Q Consensus 432 I~~IA~~ 438 (542)
-+.++.|
T Consensus 180 ~~~~~~e 186 (270)
T TIGR00436 180 DRFKISE 186 (270)
T ss_pred HHHHHHH
Confidence 3333333
Done!