RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy7978
(542 letters)
>gnl|CDD|216402 pfam01268, FTHFS, Formate--tetrahydrofolate ligase.
Length = 557
Score = 290 bits (744), Expect = 2e-91
Identities = 117/265 (44%), Positives = 158/265 (59%), Gaps = 27/265 (10%)
Query: 287 LNIKCRTSGKIPDAVVLVTTVRALKMHGGGPSVVSGQPLKPEYTENTRAVLRGEDSFLLY 346
+IKCR SG PDAVVLV TVRALKMHGG EN A+ +G +
Sbjct: 311 FDIKCRKSGLKPDAVVLVATVRALKMHGGVA-------KDDLTEENLEALEKG------F 357
Query: 347 CKLD------SQYLEHPPVTMLI--YYTYTPAEWEIIRKAAKQAGAHDAVVCENWAKGGA 398
L+ ++ PV + I + T T AE ++R+ ++AGA +A V E+WAKGG
Sbjct: 358 ANLEKHIENVKKF--GVPVVVAINRFPTDTDAELALVRELCEEAGA-EAAVSEHWAKGGE 414
Query: 399 GAADLADAVIKAT-ELKDKQFKYLYDIHDPLLTKIQTVAREMYGVHKVDCPQPVLEKLQK 457
GA +LA+AV++A E + FK LYD+ L KI+T+A E+YG V+ ++L +
Sbjct: 415 GAIELAEAVVEACIEEQPSNFKPLYDLELSLEEKIETIATEIYGADGVEFSPKAKKQLAR 474
Query: 458 LERLGYGRLTVCMAKTALSLSGDPTIKGVVPPDYVLPIHDVYVSAGAGFVVVIAGDISKM 517
+E+LG+G L VCMAKT SLS DP +KG P + LP+ +V +SAGAGF+V + GDI M
Sbjct: 475 IEKLGFGHLPVCMAKTQYSLSDDPKLKG-APTGFTLPVREVRLSAGAGFIVALTGDIMTM 533
Query: 518 PGLGTRPSIYDIDIDTRTGEIEGLF 542
PGL P+ +IDID GEI GLF
Sbjct: 534 PGLPKVPAAENIDID-EDGEIVGLF 557
Score = 214 bits (549), Expect = 8e-63
Identities = 72/154 (46%), Positives = 95/154 (61%), Gaps = 20/154 (12%)
Query: 138 VPSDIDIARAQDPKDINQLAQEIGLHVSEVSSYGRSKAKISTEVLDRLKRVQDGKYII-- 195
+ SDI+IA+A K I ++A+++GL E+ YG+ KAK+S +VLDRLK DGK I+
Sbjct: 1 MKSDIEIAQAAKLKPITEIAEKLGLPEDELEPYGKYKAKVSLDVLDRLKDRPDGKLILVT 60
Query: 196 -----------------LFLKLLLLDFGYTFACVRQPSQGPTFGIKGGAAGGGYSQVIPM 238
L L L A +R+PS GP FGIKGGAAGGGY+QV+PM
Sbjct: 61 AITPTPAGEGKTTTTIGLGQALNRLGKK-AIAALREPSLGPVFGIKGGAAGGGYAQVVPM 119
Query: 239 EEFNLHLTGDIHAVTAANNLAAAQLDARMFHEAT 272
E+ NLH TGDIHA+TAA+NL AA +D ++H
Sbjct: 120 EDINLHFTGDIHAITAAHNLLAAAIDNHIYHGNE 153
>gnl|CDD|238266 cd00477, FTHFS, Formyltetrahydrofolate synthetase (FTHFS) catalyzes
the ATP-dependent activation of formate ion via its
addition to the N10 position of tetrahydrofolate. FTHFS
is a highly expressed key enzyme in both the
Wood-Ljungdahl pathway of autotrophic CO2 fixation
(acetogenesis) and the glycine synthase/reductase
pathways of purinolysis. The key physiological role of
this enzyme in acetogens is to catalyze the formylation
of tetrahydrofolate, an initial step in the reduction of
carbon dioxide and other one-carbon precursors to
acetate. In purinolytic organisms, the enzymatic
reaction is reversed, liberating formate from
10-formyltetrahydrofolate with concurrent production of
ATP.
Length = 524
Score = 261 bits (669), Expect = 1e-80
Identities = 117/246 (47%), Positives = 153/246 (62%), Gaps = 23/246 (9%)
Query: 287 LNIKCRTSGKIPDAVVLVTTVRALKMHGGGPSVVSGQPLKPEYTENTRAVLRGEDSFLLY 346
NIKCR SG PDAVVLV TVRALKMHGG P V G EN A+ +G +
Sbjct: 295 FNIKCRYSGLKPDAVVLVATVRALKMHGGVPKVTLGL------EENLEALEKG------F 342
Query: 347 CKLDSQYLEH------PPVTML-IYYTYTPAEWEIIRKAAKQAGAHDAVVCENWAKGGAG 399
L +E+ P V + + T T AE ++RK A++AGA AV E+WA+GG G
Sbjct: 343 ANLRKH-IENIKKFGVPVVVAINKFSTDTDAELALVRKLAEEAGAFVAV-SEHWAEGGKG 400
Query: 400 AADLADAVIKATELKDKQFKYLYDIHDPLLTKIQTVAREMYGVHKVDCPQPVLEKLQKLE 459
A +LA+AVI+A E +FK+LYD+ DPL KI+T+A+++YG V+ +KL + E
Sbjct: 401 AVELAEAVIEACEQP-SEFKFLYDLEDPLEDKIETIAKKIYGADGVELSPKAKKKLARYE 459
Query: 460 RLGYGRLTVCMAKTALSLSGDPTIKGVVPPDYVLPIHDVYVSAGAGFVVVIAGDISKMPG 519
+ G+G L VCMAKT SLS DP++KG P + LPI DV +SAGAGF+V + GDI MPG
Sbjct: 460 KQGFGNLPVCMAKTQYSLSDDPSLKG-APTGFTLPIRDVRLSAGAGFIVALTGDIMTMPG 518
Query: 520 LGTRPS 525
L RP+
Sbjct: 519 LPKRPA 524
Score = 186 bits (475), Expect = 1e-52
Identities = 68/134 (50%), Positives = 85/134 (63%), Gaps = 18/134 (13%)
Query: 154 NQLAQEIGLHVSEVSSYGRSKAKISTEVLDRLKRVQDGKYII-----------------L 196
++A+E+GL E+ YG+ KAK+ +VL RL++ DGK I+ +
Sbjct: 1 EEIAKELGLLEDELEPYGKYKAKVDLDVLKRLEKRPDGKLILVTAITPTPAGEGKTTTTI 60
Query: 197 FLKLLLLDFGY-TFACVRQPSQGPTFGIKGGAAGGGYSQVIPMEEFNLHLTGDIHAVTAA 255
L L G AC+R+PS GPTFGIKGGAAGGGYSQVIPMEE NLH TGDIHA+TAA
Sbjct: 61 GLAQALNAHGKKAIACLREPSLGPTFGIKGGAAGGGYSQVIPMEEINLHFTGDIHAITAA 120
Query: 256 NNLAAAQLDARMFH 269
NNL AA +D + H
Sbjct: 121 NNLLAAAIDNHIHH 134
>gnl|CDD|178359 PLN02759, PLN02759, Formate--tetrahydrofolate ligase.
Length = 637
Score = 253 bits (648), Expect = 2e-76
Identities = 117/257 (45%), Positives = 156/257 (60%), Gaps = 2/257 (0%)
Query: 287 LNIKCRTSGKIPDAVVLVTTVRALKMHGGGPSVVSGQPLKPEYT-ENTRAVLRGEDSFLL 345
+NIKCR SG P V+V TVRALKMHGGGP+VV+G+PL YT EN V G +
Sbjct: 382 MNIKCRYSGLKPQCAVIVATVRALKMHGGGPAVVAGKPLDHAYTTENVELVEAGCVNLAR 441
Query: 346 YCKLDSQYLEHPPVTMLIYYTYTPAEWEIIRKAAKQAGAHDAVVCENWAKGGAGAADLAD 405
+ + Y + V + ++ T T AE E +R+AA AGA DAV+C + A GG GA DL +
Sbjct: 442 HIENTKSYGVNVVVAINMFATDTEAELEAVRQAALAAGAFDAVLCTHHAHGGKGAVDLGE 501
Query: 406 AVIKATELKDKQFKYLYDIHDPLLTKIQTVAREMYGVHKVDCPQPVLEKLQKLERLGYGR 465
AV KA E + FK+LY + + KI+ +A+E YG V+ + +++ R G+
Sbjct: 502 AVQKACEGNSQPFKFLYPLDISIKEKIEAIAKESYGADGVEYSEQAEAQIEMYTRQGFSN 561
Query: 466 LTVCMAKTALSLSGDPTIKGVVPPDYVLPIHDVYVSAGAGFVVVIAGDISKMPGLGTRPS 525
L +CMAKT S S D ++KG P + LPI DV S GAGF+ + G +S MPGL TRP
Sbjct: 562 LPICMAKTQYSFSHDASLKG-APSGFTLPIRDVRASVGAGFIYPLVGTMSTMPGLPTRPC 620
Query: 526 IYDIDIDTRTGEIEGLF 542
YDIDIDT TG++ GL
Sbjct: 621 FYDIDIDTETGKVLGLS 637
Score = 216 bits (552), Expect = 9e-63
Identities = 100/216 (46%), Positives = 127/216 (58%), Gaps = 30/216 (13%)
Query: 132 LNLQSPVPSDIDIARAQDPKDINQLAQEIGLHVSEVSSYGRSKAKISTEVLDRLKRVQDG 191
L ++SPVP+DIDIA++ +P I+++A+ +GL E YG+ KAK+ V DRL DG
Sbjct: 10 LEVKSPVPADIDIAQSVEPLHISEIAKALGLLPDEYDLYGKYKAKVLLSVRDRLAGAPDG 69
Query: 192 KYII-------------------LFLKLLLLDFGYTFACVRQPSQGPTFGIKGGAAGGGY 232
Y++ L L C+RQPSQGPTFGIKGGAAGGGY
Sbjct: 70 YYVVVAGITPTPLGEGKSTTTIGLCQALGAYLDKKVVTCLRQPSQGPTFGIKGGAAGGGY 129
Query: 233 SQVIPMEEFNLHLTGDIHAVTAANNLAAAQLDARMFHEATQTDQQLYSRLVPTILNIKCR 292
SQVIPMEEFNLHLTGDIHA+TAANNL AA +D R+FHEATQ+D+ L++RL P
Sbjct: 130 SQVIPMEEFNLHLTGDIHAITAANNLLAAAIDTRVFHEATQSDKALFNRLCPA------N 183
Query: 293 TSGKIPDAVVLVTTVRALKMHGGGPSVVSGQPLKPE 328
GK A V+ ++ L + P L PE
Sbjct: 184 KEGKRSFAAVMFRRLKKLGISKTDP-----DELTPE 214
>gnl|CDD|184098 PRK13507, PRK13507, formate--tetrahydrofolate ligase; Provisional.
Length = 587
Score = 251 bits (644), Expect = 2e-76
Identities = 124/257 (48%), Positives = 159/257 (61%), Gaps = 5/257 (1%)
Query: 288 NIKCRTSGKIPDAVVLVTTVRALKMHGGGPSVVSGQPLKPEYT-ENTRAVLRGEDSFLLY 346
N+KCR SG PD V+V T+RALKMHGGGP VV G+PL EYT EN V +G + L +
Sbjct: 334 NLKCRLSGLKPDCAVIVATIRALKMHGGGPKVVPGKPLPEEYTKENVGLVEKGCANLLHH 393
Query: 347 CKLDSQYLEHPPVTMLIYYTYTPAEWEIIRKAAKQAGAHDAVVCENWAKGGAGAADLADA 406
+ +P V + +YT T AE I+R+ A+QAGA A V +W KGG GA +LADA
Sbjct: 394 IGTVKKSGINPVVCINAFYTDTHAEIAIVRRLAEQAGARVA-VSRHWEKGGEGALELADA 452
Query: 407 VIKATELKDKQFKYLYDIHDPLLTKIQTVAREMYGVHKVDCPQPVLEKLQKLERLG-YGR 465
VI A FK+LY + PL +I+T+ARE+YG V KL++LE
Sbjct: 453 VIDACNEP-NDFKFLYPLEMPLRERIETIAREVYGADGVSYTPEAEAKLKRLESDPETAD 511
Query: 466 LTVCMAKTALSLSGDPTIKGVVPPDYVLPIHDVYVSAGAGFVVVIAGDISKMPGLGTRPS 525
CM KT LSLS DP +KG VP + LPI D+ GAGFVV +AGDIS MPG G+ P+
Sbjct: 512 FGTCMVKTHLSLSHDPALKG-VPKGWTLPIRDILTYGGAGFVVPVAGDISLMPGTGSDPA 570
Query: 526 IYDIDIDTRTGEIEGLF 542
ID+DT+TG+++GLF
Sbjct: 571 FRRIDVDTQTGKVKGLF 587
Score = 130 bits (330), Expect = 2e-32
Identities = 69/163 (42%), Positives = 86/163 (52%), Gaps = 23/163 (14%)
Query: 141 DIDIARA--QDPKDINQLAQEIGLHVSEVSSYGRSKAKIS-TEVLDRLKRVQDGKYII-- 195
D +IA + K + +LA+E+GL E+ YG AK+ +VLDRLK DGKYI
Sbjct: 10 DWEIAEEAEKFMKPVEELAEELGLTKEELLPYGHYIAKVDFRKVLDRLKDRPDGKYIDVT 69
Query: 196 -----------------LFLKLLLLDFGYTFACVRQPSQGPTFGIKGGAAGGGYSQVIPM 238
L L + +RQPS GPT IKG AAGGG SQ IP+
Sbjct: 70 AITPTPLGEGKSTTTMGLVQGLGKRGKKVS-GAIRQPSGGPTMNIKGSAAGGGLSQCIPL 128
Query: 239 EEFNLHLTGDIHAVTAANNLAAAQLDARMFHEATQTDQQLYSR 281
F+L LTGDI+A+ A+NLA L ARM HE TD+QL R
Sbjct: 129 TPFSLGLTGDINAIMNAHNLAMVALTARMQHERNYTDEQLARR 171
>gnl|CDD|225354 COG2759, MIS1, Formyltetrahydrofolate synthetase [Nucleotide
transport and metabolism].
Length = 554
Score = 244 bits (625), Expect = 6e-74
Identities = 108/257 (42%), Positives = 153/257 (59%), Gaps = 12/257 (4%)
Query: 287 LNIKCRTSGKIPDAVVLVTTVRALKMHGGGPSVVSGQPLKPEYT-ENTRAVLRGEDSFLL 345
+IKCR+SG PDAVVLV TVRALKMHGG P K + T EN AV +G + L
Sbjct: 309 FDIKCRSSGLKPDAVVLVATVRALKMHGGVP--------KEDLTEENVDAVKKGFANLLK 360
Query: 346 YCKLDSQYLEHPPVTMLIYYTYTPAEWEIIRKAAKQAGAHDAVVCENWAKGGAGAADLAD 405
+ + ++ V + + T T AE I K ++ G + + E WAKGG G +LA
Sbjct: 361 HIENIKKFGVPVVVAINKFPTDTEAEIAAIEKLCEEHGV-EVALSEVWAKGGEGGIELAK 419
Query: 406 AVIKATELKDKQFKYLYDIHDPLLTKIQTVAREMYGVHKVDCPQPVLEKLQKLERLGYGR 465
V++A E D +FK LYD+ DP+ KI+ +A+E+YG V+ E+L+ E+ G+
Sbjct: 420 KVVEAIEQNDSEFKRLYDVEDPIEEKIEKIAKEIYGADGVEFSPKAKEQLKTFEKQGFDN 479
Query: 466 LTVCMAKTALSLSGDPTIKGVVPPDYVLPIHDVYVSAGAGFVVVIAGDISKMPGLGTRPS 525
L +CMAKT S S DP++ G P + +PI ++ +SAGAGF+V + G+I MPGL +P+
Sbjct: 480 LPICMAKTQYSFSDDPSLLG-APTGFTVPIRELRLSAGAGFIVALTGEIMTMPGLPKKPA 538
Query: 526 IYDIDIDTRTGEIEGLF 542
+ID+D GEI GLF
Sbjct: 539 AENIDVD-EDGEIVGLF 554
Score = 189 bits (483), Expect = 1e-53
Identities = 70/152 (46%), Positives = 91/152 (59%), Gaps = 18/152 (11%)
Query: 140 SDIDIARAQDPKDINQLAQEIGLHVSEVSSYGRSKAKISTEVLDRLKRVQDGKYIILF-- 197
SDI+IARA K I ++A+++GL ++ YG KAKIS EV+ RLK DGK I++
Sbjct: 1 SDIEIARAATMKPIEEIAEKLGLSADDLELYGHYKAKISLEVIKRLKNKPDGKLILVTAI 60
Query: 198 ---------------LKLLLLDFGY-TFACVRQPSQGPTFGIKGGAAGGGYSQVIPMEEF 241
L L G +R+PS GP FGIKGGAAGGGY+QV+PME+
Sbjct: 61 TPTPAGEGKTTTTIGLVDALNKLGKKAIIALREPSLGPVFGIKGGAAGGGYAQVLPMEDI 120
Query: 242 NLHLTGDIHAVTAANNLAAAQLDARMFHEATQ 273
NLH TGD HA+TAANNL +A +D ++H
Sbjct: 121 NLHFTGDFHAITAANNLLSAAIDNHIYHGNEL 152
>gnl|CDD|237403 PRK13505, PRK13505, formate--tetrahydrofolate ligase; Provisional.
Length = 557
Score = 243 bits (622), Expect = 2e-73
Identities = 102/267 (38%), Positives = 145/267 (54%), Gaps = 32/267 (11%)
Query: 287 LNIKCRTSGKIPDAVVLVTTVRALKMHGGGPSVVSGQPLKPEYTENTRAVLRGEDSFLLY 346
L+IKCR +G PDAVV+V TVRALKMHGG V+ LK EN A+ +G
Sbjct: 312 LDIKCRKAGLKPDAVVIVATVRALKMHGG----VAKDDLK---EENVEALKKG------- 357
Query: 347 CKLDSQYLE-H---------PPVTML-IYYTYTPAEWEIIRKAAKQAGAHDAVVCENWAK 395
LE H P V + + T T AE +++ ++ G + E WAK
Sbjct: 358 ----FANLERHIENIRKFGVPVVVAINKFVTDTDAEIAALKELCEELGVE-VALSEVWAK 412
Query: 396 GGAGAADLADAVIKATELKDKQFKYLYDIHDPLLTKIQTVAREMYGVHKVDCPQPVLEKL 455
GG G +LA+ V++ E + FK LYD D L KI+ +A ++YG V+ ++L
Sbjct: 413 GGEGGVELAEKVVELIEEGESNFKPLYDDEDSLEEKIEKIATKIYGAKGVEFSPKAKKQL 472
Query: 456 QKLERLGYGRLTVCMAKTALSLSGDPTIKGVVPPDYVLPIHDVYVSAGAGFVVVIAGDIS 515
+++E+ G+ +L VCMAKT S S DP + G P + + + ++ SAGAGF+V + GDI
Sbjct: 473 KQIEKNGWDKLPVCMAKTQYSFSDDPKLLG-APTGFTITVRELRPSAGAGFIVALTGDIM 531
Query: 516 KMPGLGTRPSIYDIDIDTRTGEIEGLF 542
MPGL P+ +ID+D G I GLF
Sbjct: 532 TMPGLPKVPAALNIDVD-EDGNIVGLF 557
Score = 162 bits (412), Expect = 2e-43
Identities = 64/151 (42%), Positives = 89/151 (58%), Gaps = 18/151 (11%)
Query: 137 PVPSDIDIARAQDPKDINQLAQEIGLHVSEVSSYGRSKAKISTEVLDRLKRVQDGKYIIL 196
+ SDI+IA+ K I ++A ++G+ ++ YG+ KAKIS + + LK +DGK I++
Sbjct: 1 TMKSDIEIAQEATLKPITEIAAKLGIPEDDLEPYGKYKAKISLDKIKALKDKKDGKLILV 60
Query: 197 F-----------------LKLLLLDFGY-TFACVRQPSQGPTFGIKGGAAGGGYSQVIPM 238
L L G T +R+PS GP FGIKGGAAGGGY+QV+PM
Sbjct: 61 TAINPTPAGEGKSTVTVGLGDALNKIGKKTVIALREPSLGPVFGIKGGAAGGGYAQVVPM 120
Query: 239 EEFNLHLTGDIHAVTAANNLAAAQLDARMFH 269
E+ NLH TGD HA+T+ANNL AA +D +
Sbjct: 121 EDINLHFTGDFHAITSANNLLAALIDNHIHQ 151
>gnl|CDD|240394 PTZ00386, PTZ00386, formyl tetrahydrofolate synthetase;
Provisional.
Length = 625
Score = 243 bits (621), Expect = 8e-73
Identities = 122/256 (47%), Positives = 158/256 (61%), Gaps = 9/256 (3%)
Query: 287 LNIKCRTSGKIPDAVVLVTTVRALKMHGGGPSVVSGQPLKPEYTENTRAVLRGEDSFLLY 346
NIKCRTSG PDA VLV TVRALK HGG VV+G+ EN AV +G + +
Sbjct: 377 FNIKCRTSGLKPDAAVLVATVRALKFHGGVEPVVAGK-------ENLEAVRKGLSNLQRH 429
Query: 347 CKLDSQYLEHPPVTMLIYYTYTPAEWEIIRKAAKQ-AGAHDAVVCENWAKGGAGAADLAD 405
+ ++ V + + T T AE E++++ A Q GA D VV ++WAKGGAGA DLA
Sbjct: 430 IQNIRKFGVPVVVALNKFSTDTDAELELVKELALQEGGAADVVVTDHWAKGGAGAVDLAQ 489
Query: 406 AVIKATELKDKQFKYLYDIHDPLLTKIQTVAREMYGVHKVDCPQPVLEKLQKLERLGYGR 465
A+I+ TE FK LY + L KI+T+ +E+YG V+ EKL+ ER+GYG+
Sbjct: 490 ALIRVTENVPSNFKLLYPLDASLKEKIETICKEIYGAAGVEYLNDADEKLEDFERMGYGK 549
Query: 466 LTVCMAKTALSLSGDPTIKGVVPPDYVLPIHDVYVSAGAGFVVVIAGDISKMPGLGTRPS 525
VCMAKT S S DP ++G P + +PI DV V+ GAGFV + GDIS MPGL TRP+
Sbjct: 550 FPVCMAKTQYSFSHDPELRG-APTGFTVPIRDVRVNCGAGFVFPLLGDISTMPGLPTRPA 608
Query: 526 IYDIDIDTRTGEIEGL 541
Y+IDID TG+I GL
Sbjct: 609 FYNIDIDCETGKIVGL 624
Score = 212 bits (542), Expect = 2e-61
Identities = 91/170 (53%), Positives = 114/170 (67%), Gaps = 19/170 (11%)
Query: 132 LNLQSPVPSDIDIARAQDPKDINQLAQEIGLHVSEVSSYGRSKAKISTEVLDRLKRVQDG 191
L+ Q PVPSDIDIA++ P+ I +A+ G+ +SE+ YG ++AK+ VL RL+ +G
Sbjct: 9 LSCQWPVPSDIDIAQSVKPQPITSVAESAGILLSELDPYGSTRAKVKLSVLKRLENSPNG 68
Query: 192 KYIIL------------------FLKLLLLDFGY-TFACVRQPSQGPTFGIKGGAAGGGY 232
KY+++ + L TFAC+RQPSQGPTFGIKGGAAGGGY
Sbjct: 69 KYVVVAGMNPTPLGEGKSTTTIGLAQSLGAHLHRKTFACIRQPSQGPTFGIKGGAAGGGY 128
Query: 233 SQVIPMEEFNLHLTGDIHAVTAANNLAAAQLDARMFHEATQTDQQLYSRL 282
SQVIPME+FNLH TGDIHA+TAANNL AA LD R+FHE TQ+D LY RL
Sbjct: 129 SQVIPMEDFNLHGTGDIHAITAANNLLAAALDTRIFHERTQSDAALYRRL 178
>gnl|CDD|237404 PRK13506, PRK13506, formate--tetrahydrofolate ligase; Provisional.
Length = 578
Score = 204 bits (521), Expect = 1e-58
Identities = 102/257 (39%), Positives = 139/257 (54%), Gaps = 8/257 (3%)
Query: 288 NIKCRTSGKIPDAVVLVTTVRALKMHGGGPSVVSGQPLKPE-YTENTRAVLRGEDSFLLY 346
NIK R SGK PD VLV T+RALK + G + GQ L + + G + +
Sbjct: 326 NIKARQSGKAPDCAVLVATLRALKANSGLYDLRPGQALPDSINAPDQARLEAGFANLKWH 385
Query: 347 CKLDSQYLEHPPVTMLI--YYTYTPAEWEIIRKAAKQAGAHDAVVCENWAKGGAGAADLA 404
+QY PV + I + T T E E +++A GA + E +A+GG GA LA
Sbjct: 386 INNVAQY--GLPVVVAINRFPTDTDEELEWLKEAVLLTGAFGCEISEAFAQGGEGATALA 443
Query: 405 DAVIKATELKDKQFKYLYDIHDPLLTKIQTVAREMYGVHKVDCPQPVLEKLQKLERLGYG 464
AV++A E + QFK LY L K+ T+A YG V ++L +L LGY
Sbjct: 444 QAVVRACE-QPSQFKLLYPDEMSLEAKLMTLAEVGYGAAGVSLSDKAKQQLAQLTALGYD 502
Query: 465 RLTVCMAKTALSLSGDPTIKGVVPPDYVLPIHDVYVSAGAGFVVVIAGDISKMPGLGTRP 524
L VCMAKT LS+S DP +KG P D+ +PI ++ + AGAGF+ + G++ MPGLG +P
Sbjct: 503 HLPVCMAKTPLSISHDPALKGA-PTDFEVPIRELRLCAGAGFITALVGNVMTMPGLGLKP 561
Query: 525 SIYDIDIDTRTGEIEGL 541
+IDID GEI GL
Sbjct: 562 GYLNIDIDAD-GEIVGL 577
Score = 182 bits (465), Expect = 1e-50
Identities = 75/149 (50%), Positives = 96/149 (64%), Gaps = 18/149 (12%)
Query: 140 SDIDIARAQDPKDINQLAQEIGLHVSEVSSYGRSKAKISTEVLDRLKRVQDGKYII---- 195
SDI+I+R K I ++A ++GL E+S +G +KAK+S VL RL GK ++
Sbjct: 3 SDIEISRQAPLKPIAEIAAKLGLLPDELSPFGHTKAKVSLSVLKRLADKPKGKLVLVTAI 62
Query: 196 -------------LFLKLLLLDFGY-TFACVRQPSQGPTFGIKGGAAGGGYSQVIPMEEF 241
+ L L G AC+RQPS GP FG+KGGAAGGGY+QV+PMEE
Sbjct: 63 TPTPLGEGKTVTTIGLTQGLNALGQKVCACIRQPSMGPVFGVKGGAAGGGYAQVVPMEEL 122
Query: 242 NLHLTGDIHAVTAANNLAAAQLDARMFHE 270
NLHLTGDIHAV+AA+NLAAA +DAR+FHE
Sbjct: 123 NLHLTGDIHAVSAAHNLAAAAIDARLFHE 151
>gnl|CDD|217267 pfam02882, THF_DHG_CYH_C, Tetrahydrofolate
dehydrogenase/cyclohydrolase, NAD(P)-binding domain.
Length = 160
Score = 164 bits (419), Expect = 2e-48
Identities = 56/98 (57%), Positives = 70/98 (71%), Gaps = 6/98 (6%)
Query: 19 SKTKNIQDVVKSADILVVGIGQPEYVKGDWIKPGAVVIDCGINSVPDASKASGQKLVGDV 78
SKTK++ ++ + ADI+VV +G+P +K DW+KPGAVVID GIN V KLVGDV
Sbjct: 68 SKTKDLAEITREADIVVVAVGKPGLIKADWVKPGAVVIDVGINRVE------NGKLVGDV 121
Query: 79 QYAEAKNVASWITPVPGGVGPMTVAMLMNNTVLSAERY 116
+ K AS ITPVPGGVGPMTVAML+ NTV +A+R
Sbjct: 122 DFENVKEKASAITPVPGGVGPMTVAMLLQNTVEAAKRQ 159
>gnl|CDD|133448 cd01080, NAD_bind_m-THF_DH_Cyclohyd, NADP binding domain of
methylene-tetrahydrofolate dehydrogenase/cyclohydrolase.
NADP binding domain of the Methylene-Tetrahydrofolate
Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase)
bifunctional enzyme. Tetrahydrofolate is a versatile
carrier of activated one-carbon units. The major
one-carbon folate donors are N-5 methyltetrahydrofolate,
N5,N10-m-THF, and N10-formayltetrahydrofolate. The
oxidation of metabolic intermediate m-THF to m-THF
requires the enzyme m-THF DH. In addition, most DHs also
have an associated cyclohydrolase activity which
catalyzes its hydrolysis to N10-formyltetrahydrofolate.
m-THF DH is typically found as part of a multifunctional
protein in eukaryotes. NADP-dependent m-THF DH in
mammals, birds and yeast are components of a
trifunctional enzyme with DH, cyclohydrolase, and
synthetase activities. Certain eukaryotic cells also
contain homodimeric bifunctional DH/cyclodrolase form.
In bacteria, monofucntional DH, as well as bifunctional
m-THF m-THF DHm-THF DHDH/cyclodrolase are found. In
addition, yeast (S. cerevisiae) also express an
monofunctional DH. This family contains the bifunctional
DH/cyclohydrolase. M-THF DH, like other amino acid
DH-like NAD(P)-binding domains, is a member of the
Rossmann fold superfamily which includes glutamate,
leucine, and phenylalanine DHs, m-THF DH,
methylene-tetrahydromethanopterin DH, m-THF
DH/cyclohydrolase, Shikimate DH-like proteins, malate
oxidoreductases, and glutamyl tRNA reductase. Amino acid
DHs catalyze the deamination of amino acids to keto
acids with NAD(P)+ as a cofactor. The NAD(P)-binding
Rossmann fold superfamily includes a wide variety of
protein families including NAD(P)- binding domains of
alcohol DHs, tyrosine-dependent oxidoreductases,
glyceraldehyde-3-phosphate DH, lactate/malate DHs,
formate/glycerate DHs, siroheme synthases,
6-phosphogluconate DH, amino acid DHs, repressor rex,
NAD-binding potassium channel domain, CoA-binding, and
ornithine cyclodeaminase-like domains.
Length = 168
Score = 161 bits (410), Expect = 4e-47
Identities = 62/96 (64%), Positives = 73/96 (76%), Gaps = 3/96 (3%)
Query: 19 SKTKNIQDVVKSADILVVGIGQPEYVKGDWIKPGAVVIDCGINSVPDASKASGQKLVGDV 78
SKTKN+++ K ADI++V +G+P VKGD +KPGAVVID GIN VPD S KLVGDV
Sbjct: 76 SKTKNLKEHTKQADIVIVAVGKPGLVKGDMVKPGAVVIDVGINRVPDKSG---GKLVGDV 132
Query: 79 QYAEAKNVASWITPVPGGVGPMTVAMLMNNTVLSAE 114
+ AK AS ITPVPGGVGPMTVAMLM NTV +A+
Sbjct: 133 DFESAKEKASAITPVPGGVGPMTVAMLMKNTVEAAK 168
>gnl|CDD|236760 PRK10792, PRK10792, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 285
Score = 155 bits (393), Expect = 3e-43
Identities = 55/101 (54%), Positives = 72/101 (71%), Gaps = 6/101 (5%)
Query: 19 SKTKNIQDVVKSADILVVGIGQPEYVKGDWIKPGAVVIDCGINSVPDASKASGQKLVGDV 78
TKN++ V++AD+LVV +G+P ++ G+WIKPGA+VID GIN + D KLVGDV
Sbjct: 191 RFTKNLRHHVRNADLLVVAVGKPGFIPGEWIKPGAIVIDVGINRLEDG------KLVGDV 244
Query: 79 QYAEAKNVASWITPVPGGVGPMTVAMLMNNTVLSAERYIDR 119
++ A ASWITPVPGGVGPMTVA L+ NT+ + E Y D
Sbjct: 245 EFETAAERASWITPVPGGVGPMTVATLLENTLQACEEYHDP 285
>gnl|CDD|184558 PRK14188, PRK14188, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 296
Score = 153 bits (389), Expect = 2e-42
Identities = 58/98 (59%), Positives = 73/98 (74%), Gaps = 1/98 (1%)
Query: 19 SKTKNIQDVVKSADILVVGIGQPEYVKGDWIKPGAVVIDCGINSVPDASKASGQ-KLVGD 77
S+T+++ V + ADILV +G+PE VKGDWIKPGA VID GIN +P K G+ +LVGD
Sbjct: 190 SRTRDLPAVCRRADILVAAVGRPEMVKGDWIKPGATVIDVGINRIPAPEKGEGKTRLVGD 249
Query: 78 VQYAEAKNVASWITPVPGGVGPMTVAMLMNNTVLSAER 115
V +AEA VA ITPVPGGVGPMT+A L+ NT+ +A R
Sbjct: 250 VAFAEAAEVAGAITPVPGGVGPMTIACLLANTLTAACR 287
>gnl|CDD|223268 COG0190, FolD, 5,10-methylene-tetrahydrofolate
dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase
[Coenzyme metabolism].
Length = 283
Score = 151 bits (383), Expect = 8e-42
Identities = 56/101 (55%), Positives = 71/101 (70%), Gaps = 6/101 (5%)
Query: 19 SKTKNIQDVVKSADILVVGIGQPEYVKGDWIKPGAVVIDCGINSVPDASKASGQKLVGDV 78
S+TK++ + K+ADI+VV +G+P ++K D +KPGAVVID GIN V D KLVGDV
Sbjct: 188 SRTKDLASITKNADIVVVAVGKPHFIKADMVKPGAVVIDVGINRVND------GKLVGDV 241
Query: 79 QYAEAKNVASWITPVPGGVGPMTVAMLMNNTVLSAERYIDR 119
+ K AS ITPVPGGVGPMTVAML+ NT+ +AER
Sbjct: 242 DFDSVKEKASAITPVPGGVGPMTVAMLLENTLKAAERQRGE 282
>gnl|CDD|178131 PLN02516, PLN02516, methylenetetrahydrofolate dehydrogenase
(NADP+).
Length = 299
Score = 141 bits (356), Expect = 6e-38
Identities = 59/99 (59%), Positives = 72/99 (72%)
Query: 19 SKTKNIQDVVKSADILVVGIGQPEYVKGDWIKPGAVVIDCGINSVPDASKASGQKLVGDV 78
S+T + + +V+ ADI++ GQ +KGDWIKPGA VID G N+V D SK SG +LVGDV
Sbjct: 199 SRTPDPESIVREADIVIAAAGQAMMIKGDWIKPGAAVIDVGTNAVSDPSKKSGYRLVGDV 258
Query: 79 QYAEAKNVASWITPVPGGVGPMTVAMLMNNTVLSAERYI 117
+AE VA WITPVPGGVGPMTVAML+ NTV A+R
Sbjct: 259 DFAEVSKVAGWITPVPGGVGPMTVAMLLKNTVDGAKRVF 297
>gnl|CDD|184560 PRK14190, PRK14190, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 284
Score = 137 bits (346), Expect = 1e-36
Identities = 52/101 (51%), Positives = 69/101 (68%), Gaps = 6/101 (5%)
Query: 19 SKTKNIQDVVKSADILVVGIGQPEYVKGDWIKPGAVVIDCGINSVPDASKASGQKLVGDV 78
SKTKN+ ++ K ADIL+V +G+P+ + D +K GAVVID G+N + + KL GDV
Sbjct: 190 SKTKNLAELTKQADILIVAVGKPKLITADMVKEGAVVIDVGVNRLENG------KLCGDV 243
Query: 79 QYAEAKNVASWITPVPGGVGPMTVAMLMNNTVLSAERYIDR 119
+ K AS+ITPVPGGVGPMT+ MLM+NTV A+R R
Sbjct: 244 DFDNVKEKASYITPVPGGVGPMTITMLMHNTVELAKRAGGR 284
>gnl|CDD|215332 PLN02616, PLN02616, tetrahydrofolate dehydrogenase/cyclohydrolase,
putative.
Length = 364
Score = 138 bits (350), Expect = 2e-36
Identities = 60/97 (61%), Positives = 76/97 (78%)
Query: 19 SKTKNIQDVVKSADILVVGIGQPEYVKGDWIKPGAVVIDCGINSVPDASKASGQKLVGDV 78
S+TKN +++ + ADI++ +GQP V+G WIKPGAVVID GIN V DAS G +LVGDV
Sbjct: 263 SRTKNPEEITREADIIISAVGQPNMVRGSWIKPGAVVIDVGINPVEDASSPRGYRLVGDV 322
Query: 79 QYAEAKNVASWITPVPGGVGPMTVAMLMNNTVLSAER 115
Y EA VAS +TPVPGGVGPMT+AML++NT+ SA+R
Sbjct: 323 CYEEACKVASAVTPVPGGVGPMTIAMLLSNTLTSAKR 359
>gnl|CDD|237636 PRK14186, PRK14186, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 297
Score = 131 bits (331), Expect = 2e-34
Identities = 46/97 (47%), Positives = 68/97 (70%), Gaps = 2/97 (2%)
Query: 19 SKTKNIQDVVKSADILVVGIGQPEYVKGDWIKPGAVVIDCGINSVPDASKASGQKLVGDV 78
S+T+++ + + ADILV G+P + + +KPGAVV+D GI+ +P + + +L GDV
Sbjct: 190 SRTQDLASITREADILVAAAGRPNLIGAEMVKPGAVVVDVGIHRLPSSDGKT--RLCGDV 247
Query: 79 QYAEAKNVASWITPVPGGVGPMTVAMLMNNTVLSAER 115
+ E + VA+ ITPVPGGVGPMTV ML+ NTVLS ++
Sbjct: 248 DFEEVEPVAAAITPVPGGVGPMTVTMLLVNTVLSWQK 284
>gnl|CDD|172662 PRK14174, PRK14174, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 295
Score = 129 bits (325), Expect = 1e-33
Identities = 54/97 (55%), Positives = 66/97 (68%)
Query: 19 SKTKNIQDVVKSADILVVGIGQPEYVKGDWIKPGAVVIDCGINSVPDASKASGQKLVGDV 78
S TK+I + ADIL+ IG+ ++ D +KPGAVVID GIN + D S SG +LVGDV
Sbjct: 195 SATKDIPSYTRQADILIAAIGKARFITADMVKPGAVVIDVGINRIEDPSTKSGYRLVGDV 254
Query: 79 QYAEAKNVASWITPVPGGVGPMTVAMLMNNTVLSAER 115
Y AS ITPVPGGVGPMT+AML+ NT+ S ER
Sbjct: 255 DYEGVSAKASAITPVPGGVGPMTIAMLLKNTLQSFER 291
>gnl|CDD|172675 PRK14187, PRK14187, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 294
Score = 126 bits (317), Expect = 1e-32
Identities = 53/95 (55%), Positives = 66/95 (69%), Gaps = 3/95 (3%)
Query: 19 SKTKNIQDVVKSADILVVGIGQPEYVKGDWIKPGAVVIDCGINSVPDASKASGQKLVGDV 78
S T+++ D ADILV +G P +VK WIK GA+VID GINS+ + +K VGDV
Sbjct: 192 SATRDLADYCSKADILVAAVGIPNFVKYSWIKKGAIVIDVGINSIEEGGV---KKFVGDV 248
Query: 79 QYAEAKNVASWITPVPGGVGPMTVAMLMNNTVLSA 113
+AE K AS ITPVPGGVGPMT+A LM NTV++A
Sbjct: 249 DFAEVKKKASAITPVPGGVGPMTIAFLMVNTVIAA 283
>gnl|CDD|184559 PRK14189, PRK14189, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 285
Score = 124 bits (314), Expect = 3e-32
Identities = 46/97 (47%), Positives = 62/97 (63%), Gaps = 6/97 (6%)
Query: 19 SKTKNIQDVVKSADILVVGIGQPEYVKGDWIKPGAVVIDCGINSVPDASKASGQKLVGDV 78
SKT+++ + ADI+V +G+ + D +KPGA VID G+N KL GDV
Sbjct: 190 SKTRDLAAHTRQADIVVAAVGKRNVLTADMVKPGATVIDVGMNRDDAG------KLCGDV 243
Query: 79 QYAEAKNVASWITPVPGGVGPMTVAMLMNNTVLSAER 115
+A K VA +ITPVPGGVGPMT+ ML+ NT+ +AER
Sbjct: 244 DFAGVKEVAGYITPVPGGVGPMTITMLLVNTIEAAER 280
>gnl|CDD|184556 PRK14185, PRK14185, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 293
Score = 123 bits (309), Expect = 2e-31
Identities = 52/99 (52%), Positives = 71/99 (71%)
Query: 19 SKTKNIQDVVKSADILVVGIGQPEYVKGDWIKPGAVVIDCGINSVPDASKASGQKLVGDV 78
S++KN++ ADI++ +GQPE+VK D +K GAVVID G VPDA++ SG KL GDV
Sbjct: 193 SRSKNLKKECLEADIIIAALGQPEFVKADMVKEGAVVIDVGTTRVPDATRKSGFKLTGDV 252
Query: 79 QYAEAKNVASWITPVPGGVGPMTVAMLMNNTVLSAERYI 117
++ E S+ITPVPGGVGPMT+ LM NT+L+ ++ I
Sbjct: 253 KFDEVAPKCSYITPVPGGVGPMTIVSLMKNTLLAGKKAI 291
>gnl|CDD|172679 PRK14191, PRK14191, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 285
Score = 121 bits (304), Expect = 8e-31
Identities = 44/102 (43%), Positives = 66/102 (64%), Gaps = 6/102 (5%)
Query: 19 SKTKNIQDVVKSADILVVGIGQPEYVKGDWIKPGAVVIDCGINSVPDASKASGQKLVGDV 78
TK++ ++ADI+ VG+G+P+ +K +K GAVV+D GIN + D +LVGDV
Sbjct: 189 ILTKDLSFYTQNADIVCVGVGKPDLIKASMVKKGAVVVDIGINRLNDG------RLVGDV 242
Query: 79 QYAEAKNVASWITPVPGGVGPMTVAMLMNNTVLSAERYIDRL 120
+ AS+ITPVPGGVGPMT+ L+ NT+++AE+ +
Sbjct: 243 DFENVAPKASFITPVPGGVGPMTIVSLLENTLIAAEKRQRKG 284
>gnl|CDD|237634 PRK14179, PRK14179, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 284
Score = 118 bits (297), Expect = 7e-30
Identities = 49/101 (48%), Positives = 68/101 (67%), Gaps = 6/101 (5%)
Query: 19 SKTKNIQDVVKSADILVVGIGQPEYVKGDWIKPGAVVIDCGINSVPDASKASGQKLVGDV 78
S+T+N+ +V + ADILVV IG+ +V +++K GAVVID G+N + KL+GDV
Sbjct: 190 SRTRNLAEVARKADILVVAIGRGHFVTKEFVKEGAVVIDVGMNRDENG------KLIGDV 243
Query: 79 QYAEAKNVASWITPVPGGVGPMTVAMLMNNTVLSAERYIDR 119
+ E VAS+ITPVPGGVGPMT+ MLM T +A R + +
Sbjct: 244 DFDEVAEVASYITPVPGGVGPMTITMLMEQTYQAALRSLHK 284
>gnl|CDD|178485 PLN02897, PLN02897, tetrahydrofolate dehydrogenase/cyclohydrolase,
putative.
Length = 345
Score = 118 bits (296), Expect = 3e-29
Identities = 52/98 (53%), Positives = 67/98 (68%)
Query: 21 TKNIQDVVKSADILVVGIGQPEYVKGDWIKPGAVVIDCGINSVPDASKASGQKLVGDVQY 80
TK+ + + + ADI++ G P V+G W+KPGAVVID G V D+S G +LVGDV Y
Sbjct: 248 TKDPEQITRKADIVIAAAGIPNLVRGSWLKPGAVVIDVGTTPVEDSSCEFGYRLVGDVCY 307
Query: 81 AEAKNVASWITPVPGGVGPMTVAMLMNNTVLSAERYID 118
EA VAS ITPVPGGVGPMT+ ML+ NT+ +A+R
Sbjct: 308 EEALGVASAITPVPGGVGPMTITMLLCNTLDAAKRIFL 345
>gnl|CDD|184551 PRK14173, PRK14173, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 287
Score = 112 bits (281), Expect = 1e-27
Identities = 49/101 (48%), Positives = 65/101 (64%), Gaps = 3/101 (2%)
Query: 19 SKTKNIQDVVKSADILVVGIGQPEYVKGDWIKPGAVVIDCGINSVPDASKASGQKLVGDV 78
SKT+++ V + AD+LVV +G+P + + ++PGAVV+D GIN V L GDV
Sbjct: 187 SKTQDLPAVTRRADVLVVAVGRPHLITPEMVRPGAVVVDVGINRVG--GNGGRDILTGDV 244
Query: 79 QYAEAKNVASWITPVPGGVGPMTVAMLMNNTVLSAERYIDR 119
+ E VA +TPVPGGVGPMTVAMLM NTV++A R
Sbjct: 245 -HPEVAEVAGALTPVPGGVGPMTVAMLMANTVIAALRRRGG 284
>gnl|CDD|172682 PRK14194, PRK14194, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 301
Score = 111 bits (280), Expect = 2e-27
Identities = 48/96 (50%), Positives = 66/96 (68%), Gaps = 3/96 (3%)
Query: 19 SKTKNIQDVVKSADILVVGIGQPEYVKGDWIKPGAVVIDCGINSVPDASKASGQKLVGDV 78
S++ + + + + ADI+V +G+P + DW+KPGAVVID GIN + D ++ +LVGDV
Sbjct: 191 SRSTDAKALCRQADIVVAAVGRPRLIDADWLKPGAVVIDVGINRIDDDGRS---RLVGDV 247
Query: 79 QYAEAKNVASWITPVPGGVGPMTVAMLMNNTVLSAE 114
+ A V S ITPVPGGVGPMT+A LM NTV +A
Sbjct: 248 DFDSALPVVSAITPVPGGVGPMTIAFLMKNTVTAAR 283
>gnl|CDD|184549 PRK14167, PRK14167, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 297
Score = 111 bits (278), Expect = 3e-27
Identities = 50/95 (52%), Positives = 62/95 (65%), Gaps = 1/95 (1%)
Query: 19 SKTKNIQDVVKSADILVVGIGQPEYVKGDWIKPGAVVIDCGINSVPDASKASGQKLVGDV 78
S+T ++ + ADI+V G PE + G + GA VID GIN V DA G +LVGDV
Sbjct: 193 SRTDDLAAKTRRADIVVAAAGVPELIDGSMLSEGATVIDVGINRV-DADTEKGYELVGDV 251
Query: 79 QYAEAKNVASWITPVPGGVGPMTVAMLMNNTVLSA 113
++ AK AS ITPVPGGVGPMT AML+ NTV +A
Sbjct: 252 EFESAKEKASAITPVPGGVGPMTRAMLLYNTVKAA 286
>gnl|CDD|237633 PRK14168, PRK14168, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 297
Score = 110 bits (276), Expect = 5e-27
Identities = 49/95 (51%), Positives = 61/95 (64%)
Query: 19 SKTKNIQDVVKSADILVVGIGQPEYVKGDWIKPGAVVIDCGINSVPDASKASGQKLVGDV 78
+++KN+ + ADIL+V G P VK +WIKPGA VID G+N V L GDV
Sbjct: 197 TRSKNLARHCQRADILIVAAGVPNLVKPEWIKPGATVIDVGVNRVGTNESTGKAILSGDV 256
Query: 79 QYAEAKNVASWITPVPGGVGPMTVAMLMNNTVLSA 113
+ K +A ITPVPGGVGPMT+AMLM NT+ SA
Sbjct: 257 DFDAVKEIAGKITPVPGGVGPMTIAMLMRNTLKSA 291
>gnl|CDD|237635 PRK14184, PRK14184, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 286
Score = 109 bits (274), Expect = 1e-26
Identities = 47/94 (50%), Positives = 60/94 (63%), Gaps = 7/94 (7%)
Query: 19 SKTKNIQDVVKSADILVVGIGQPEYVKGDWIKPGAVVIDCGINSVPDASKASGQKLVGDV 78
S+T ++ + + AD L V IG+P +V D +KPGAVV+D GIN D LVGD
Sbjct: 193 SRTPDLAEECREADFLFVAIGRPRFVTADMVKPGAVVVDVGINRTDDG-------LVGDC 245
Query: 79 QYAEAKNVASWITPVPGGVGPMTVAMLMNNTVLS 112
+ +VAS ITPVPGGVGPMT+A L+ NTV S
Sbjct: 246 DFEGLSDVASAITPVPGGVGPMTIAQLLVNTVQS 279
>gnl|CDD|172666 PRK14178, PRK14178, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 279
Score = 105 bits (264), Expect = 2e-25
Identities = 47/95 (49%), Positives = 60/95 (63%), Gaps = 7/95 (7%)
Query: 19 SKTKNIQDVVKSADILVVGIGQPEYVKGDWIKPGAVVIDCGINSVPDASKASGQKLVGDV 78
SKT+N++ ++ ADILV G+ ++ D +KPGA VID GIN V KL GDV
Sbjct: 184 SKTENLKAELRQADILVSAAGKAGFITPDMVKPGATVIDVGINQV-------NGKLCGDV 236
Query: 79 QYAEAKNVASWITPVPGGVGPMTVAMLMNNTVLSA 113
+ K +A ITPVPGGVGPMT+A LM NT +A
Sbjct: 237 DFDAVKEIAGAITPVPGGVGPMTIATLMENTFDAA 271
>gnl|CDD|184561 PRK14192, PRK14192, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 283
Score = 104 bits (260), Expect = 7e-25
Identities = 44/99 (44%), Positives = 64/99 (64%), Gaps = 7/99 (7%)
Query: 19 SKTKNIQDVVKSADILVVGIGQPEYVKGDWIKPGAVVIDCGINSVPDASKASGQKLVGDV 78
S+T+N+ ++VK ADI+V +G+PE +K DWIK GAVV+D G + VGD+
Sbjct: 191 SRTQNLPELVKQADIIVGAVGKPELIKKDWIKQGAVVVDAGFHPRDGGG-------VGDI 243
Query: 79 QYAEAKNVASWITPVPGGVGPMTVAMLMNNTVLSAERYI 117
+ + +AS TPVPGGVGPMT+ L+ TV +AE+ +
Sbjct: 244 ELQGIEEIASAYTPVPGGVGPMTINTLIRQTVEAAEKAL 282
>gnl|CDD|184550 PRK14169, PRK14169, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 282
Score = 101 bits (254), Expect = 4e-24
Identities = 52/97 (53%), Positives = 65/97 (67%), Gaps = 6/97 (6%)
Query: 19 SKTKNIQDVVKSADILVVGIGQPEYVKGDWIKPGAVVIDCGINSVPDASKASGQKLVGDV 78
SKT+N++ + K ADILVV +G P ++ D +KPGAVVID GI+ D KL+GDV
Sbjct: 188 SKTRNLKQLTKEADILVVAVGVPHFIGADAVKPGAVVIDVGISRGADG------KLLGDV 241
Query: 79 QYAEAKNVASWITPVPGGVGPMTVAMLMNNTVLSAER 115
A +AS ITPVPGGVGPMT+A LM TV A+R
Sbjct: 242 DEAAVAPIASAITPVPGGVGPMTIASLMAQTVTLAKR 278
>gnl|CDD|184555 PRK14183, PRK14183, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 281
Score = 101 bits (254), Expect = 5e-24
Identities = 45/94 (47%), Positives = 64/94 (68%), Gaps = 6/94 (6%)
Query: 21 TKNIQDVVKSADILVVGIGQPEYVKGDWIKPGAVVIDCGINSVPDASKASGQKLVGDVQY 80
TK+++ K ADI++VG+G+P + D +K GA+VID GIN D +LVGDV +
Sbjct: 191 TKDLKAHTKKADIVIVGVGKPNLITEDMVKEGAIVIDIGINRTEDG------RLVGDVDF 244
Query: 81 AEAKNVASWITPVPGGVGPMTVAMLMNNTVLSAE 114
S+ITPVPGGVGPMT+AML++NT+ +A+
Sbjct: 245 ENVAKKCSYITPVPGGVGPMTIAMLLSNTLKAAK 278
>gnl|CDD|172670 PRK14182, PRK14182, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 282
Score = 100 bits (250), Expect = 1e-23
Identities = 55/97 (56%), Positives = 66/97 (68%), Gaps = 6/97 (6%)
Query: 19 SKTKNIQDVVKSADILVVGIGQPEYVKGDWIKPGAVVIDCGINSVPDASKASGQKLVGDV 78
S+T ++ V ADILV IG+ E VKG W+K GAVVID G+N + D KLVGDV
Sbjct: 189 SRTADLAGEVGRADILVAAIGKAELVKGAWVKEGAVVIDVGMNRLADG------KLVGDV 242
Query: 79 QYAEAKNVASWITPVPGGVGPMTVAMLMNNTVLSAER 115
++A A AS ITPVPGGVGPMT AML+ NTV A+R
Sbjct: 243 EFAAAAARASAITPVPGGVGPMTRAMLLVNTVELAKR 279
>gnl|CDD|237637 PRK14193, PRK14193, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 284
Score = 100 bits (251), Expect = 1e-23
Identities = 40/95 (42%), Positives = 53/95 (55%), Gaps = 7/95 (7%)
Query: 21 TKNIQDVVKSADILVVGIGQPEYVKGDWIKPGAVVIDCGINSVPDASKASGQKLVGDVQY 80
T+++ + ADI+V G V D +KPGA V+D G++ D KLVGDV
Sbjct: 194 TRDLAAHTRRADIIVAAAGVAHLVTADMVKPGAAVLDVGVSRAGDG------KLVGDVH- 246
Query: 81 AEAKNVASWITPVPGGVGPMTVAMLMNNTVLSAER 115
+ VA ++P PGGVGPMT A L+ N V AER
Sbjct: 247 PDVWEVAGAVSPNPGGVGPMTRAFLLTNVVERAER 281
>gnl|CDD|172660 PRK14172, PRK14172, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 278
Score = 100 bits (250), Expect = 2e-23
Identities = 43/90 (47%), Positives = 63/90 (70%), Gaps = 7/90 (7%)
Query: 19 SKTKNIQDVVKSADILVVGIGQPEYVKGDWIKPGAVVIDCGINSVPDASKASGQKLVGDV 78
SKTKN+++V K ADILVV IG+P+++ +++K GA+VID G +SV K+ GDV
Sbjct: 190 SKTKNLKEVCKKADILVVAIGRPKFIDEEYVKEGAIVIDVGTSSVNG-------KITGDV 242
Query: 79 QYAEAKNVASWITPVPGGVGPMTVAMLMNN 108
+ + + AS+ITPVPGGVG +T +L+ N
Sbjct: 243 NFDKVIDKASYITPVPGGVGSLTTTLLIKN 272
>gnl|CDD|172658 PRK14170, PRK14170, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 284
Score = 97.5 bits (242), Expect = 2e-22
Identities = 48/97 (49%), Positives = 66/97 (68%), Gaps = 6/97 (6%)
Query: 19 SKTKNIQDVVKSADILVVGIGQPEYVKGDWIKPGAVVIDCGINSVPDASKASGQKLVGDV 78
S+TK++ V K ADILVV G ++VK D+IKPGA+VID G++ + KL GDV
Sbjct: 189 SRTKDLPQVAKEADILVVATGLAKFVKKDYIKPGAIVIDVGMD------RDENNKLCGDV 242
Query: 79 QYAEAKNVASWITPVPGGVGPMTVAMLMNNTVLSAER 115
+ + A +ITPVPGGVGPMT+ ML+ NT+ +A+R
Sbjct: 243 DFDDVVEEAGFITPVPGGVGPMTITMLLANTLKAAKR 279
>gnl|CDD|172654 PRK14166, PRK14166, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 282
Score = 97.0 bits (241), Expect = 2e-22
Identities = 44/109 (40%), Positives = 67/109 (61%), Gaps = 10/109 (9%)
Query: 14 ANPSMS----KTKNIQDVVKSADILVVGIGQPEYVKGDWIKPGAVVIDCGINSVPDASKA 69
A ++S KTK++ + AD+++V G ++ D +K G +V+D GIN +
Sbjct: 180 AGATVSVCHIKTKDLSLYTRQADLIIVAAGCVNLLRSDMVKEGVIVVDVGINRLESG--- 236
Query: 70 SGQKLVGDVQYAEAKNVASWITPVPGGVGPMTVAMLMNNTVLSAERYID 118
K+VGDV + E +S+ITPVPGGVGPMT+AML+ NTV SA+ ++
Sbjct: 237 ---KIVGDVDFEEVSKKSSYITPVPGGVGPMTIAMLLENTVKSAKNRLN 282
>gnl|CDD|184553 PRK14176, PRK14176, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 287
Score = 96.8 bits (241), Expect = 2e-22
Identities = 41/95 (43%), Positives = 55/95 (57%), Gaps = 7/95 (7%)
Query: 21 TKNIQDVVKSADILVVGIGQPEYVKGDWIKPGAVVIDCGINSVPDASKASGQKLVGDVQY 80
T +++ ADILVV G +K D +K GAV+ D GI D K+ GDV +
Sbjct: 198 TDDLKKYTLDADILVVATGVKHLIKADMVKEGAVIFDVGITKEED-------KVYGDVDF 250
Query: 81 AEAKNVASWITPVPGGVGPMTVAMLMNNTVLSAER 115
AS ITPVPGGVGP+T+AMLM + ++ AE+
Sbjct: 251 ENVIKKASLITPVPGGVGPLTIAMLMKHVLMCAEK 285
>gnl|CDD|184552 PRK14175, PRK14175, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 286
Score = 96.5 bits (240), Expect = 3e-22
Identities = 43/97 (44%), Positives = 64/97 (65%), Gaps = 6/97 (6%)
Query: 19 SKTKNIQDVVKSADILVVGIGQPEYVKGDWIKPGAVVIDCGINSVPDASKASGQKLVGDV 78
S++K++ +K AD++V +G+P V D +K GAV+ID G + PD + KL GDV
Sbjct: 190 SRSKDMASYLKDADVIVSAVGKPGLVTKDVVKEGAVIIDVG--NTPDENG----KLKGDV 243
Query: 79 QYAEAKNVASWITPVPGGVGPMTVAMLMNNTVLSAER 115
Y K +A ITPVPGGVGP+T+ M++NNT+L+ +
Sbjct: 244 DYDAVKEIAGAITPVPGGVGPLTITMVLNNTLLAEKM 280
>gnl|CDD|172665 PRK14177, PRK14177, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 284
Score = 96.2 bits (239), Expect = 3e-22
Identities = 44/95 (46%), Positives = 66/95 (69%), Gaps = 10/95 (10%)
Query: 19 SKTKNIQDVVKSADILVVGIGQPEYVKGDWIKPGAVVIDCGINSVPDASKASGQKLVGDV 78
SKT+N+ +V+ ADI+V +G+PE++K DWI GAV++D G N G VGD+
Sbjct: 191 SKTQNLPSIVRQADIIVGAVGKPEFIKADWISEGAVLLDAGYN--------PGN--VGDI 240
Query: 79 QYAEAKNVASWITPVPGGVGPMTVAMLMNNTVLSA 113
+ ++AK+ +S+ TPVPGGVGPMT+A+L+ T+ S
Sbjct: 241 EISKAKDKSSFYTPVPGGVGPMTIAVLLLQTLYSF 275
>gnl|CDD|172669 PRK14181, PRK14181, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 287
Score = 96.1 bits (239), Expect = 4e-22
Identities = 45/98 (45%), Positives = 64/98 (65%), Gaps = 1/98 (1%)
Query: 19 SKTKNIQDVVKSADILVVGIGQPEYVKGDWIKPGAVVIDCGINSVPDASKASGQKLVGDV 78
S+++N+ +++K+ADI++ IG P ++K + I AV++D G + VP A+ G LVGDV
Sbjct: 189 SQSENLTEILKTADIIIAAIGVPLFIKEEMIAEKAVIVDVGTSRVP-AANPKGYILVGDV 247
Query: 79 QYAEAKNVASWITPVPGGVGPMTVAMLMNNTVLSAERY 116
+ ITPVPGGVGPMTVAMLM NT S R+
Sbjct: 248 DFNNVVPKCRAITPVPGGVGPMTVAMLMRNTWESYLRH 285
>gnl|CDD|133451 cd05212, NAD_bind_m-THF_DH_Cyclohyd_like, NAD(P) binding domain of
methylene-tetrahydrofolate dehydrogenase and
methylene-tetrahydrofolate dehydrogenase/cyclohydrolase.
NAD(P) binding domains of methylene-tetrahydrofolate
dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase
bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is
a versatile carrier of activated one-carbon units. The
major one-carbon folate donors are N-5
methyltetrahydrofolate, N5,N10-m-THF, and
N10-formayltetrahydrofolate. The oxidation of metabolic
intermediate m-THF to m-THF requires the enzyme m-THF
DH. In addition, most DHs also have an associated
cyclohydrolase activity which catalyzes its hydrolysis
to N10-formyltetrahydrofolate. m-THF DH is typically
found as part of a multifunctional protein in
eukaryotes. NADP-dependent m-THF DH in mammals, birds
and yeast are components of a trifunctional enzyme with
DH, cyclohydrolase, and synthetase activities. Certain
eukaryotic cells also contain homodimeric bifunctional
DH/cyclodrolase form. In bacteria, mono-functional DH,
as well as bifunctional DH/cyclodrolase are found. In
addition, yeast (S. cerevisiae) also express a
monofunctional DH. M-THF DH, like other amino acid
DH-like NAD(P)-binding domains, is a member of the
Rossmann fold superfamily which includes glutamate,
leucine, and phenylalanine DHs, m-THF DH,
methylene-tetrahydromethanopterin DH, m-THF
DH/cyclohydrolase, Shikimate DH-like proteins, malate
oxidoreductases, and glutamyl tRNA reductase. Amino acid
DHs catalyze the deamination of amino acids to keto
acids with NAD(P)+ as a cofactor. The NAD(P)-binding
Rossmann fold superfamily includes a wide variety of
protein families including NAD(P)- binding domains of
alcohol DHs, tyrosine-dependent oxidoreductases,
glyceraldehyde-3-phosphate DH, lactate/malate DHs,
formate/glycerate DHs, siroheme synthases,
6-phosphogluconate DH, amino acid DHs, repressor rex,
NAD-binding potassium channel domain, CoA-binding, and
ornithine cyclodeaminase-like domains. These domains
have an alpha-beta-alpha configuration. NAD binding
involves numerous hydrogen and van der Waals contacts.
Length = 140
Score = 90.6 bits (225), Expect = 1e-21
Identities = 37/96 (38%), Positives = 47/96 (48%), Gaps = 15/96 (15%)
Query: 19 SKTKNIQDVVKSADILVVGIGQPEYVKGDWIKPGAVVIDCGINSVPDASKASGQKLVGDV 78
KT +Q V AD++VVG +PE V +WIKPGA VI+C +
Sbjct: 60 WKTIQLQSKVHDADVVVVGSPKPEKVPTEWIKPGATVINCSPTK---------------L 104
Query: 79 QYAEAKNVASWITPVPGGVGPMTVAMLMNNTVLSAE 114
+ K AS P+ GGVG +TVAM M N V S
Sbjct: 105 SGDDVKESASLYVPMTGGVGKLTVAMRMQNMVRSVR 140
>gnl|CDD|172659 PRK14171, PRK14171, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 288
Score = 94.3 bits (234), Expect = 2e-21
Identities = 41/92 (44%), Positives = 58/92 (63%), Gaps = 6/92 (6%)
Query: 19 SKTKNIQDVVKSADILVVGIGQPEYVKGDWIKPGAVVIDCGINSVPDASKASGQKLVGDV 78
SKT N+ + ADI+V IG P + ++ P ++VID GIN + SG K++GDV
Sbjct: 191 SKTHNLSSITSKADIVVAAIGSPLKLTAEYFNPESIVIDVGINRI------SGNKIIGDV 244
Query: 79 QYAEAKNVASWITPVPGGVGPMTVAMLMNNTV 110
+ K+ +ITPVPGG+GPMT+A L+ NTV
Sbjct: 245 DFENVKSKVKYITPVPGGIGPMTIAFLLKNTV 276
>gnl|CDD|172668 PRK14180, PRK14180, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 282
Score = 86.6 bits (214), Expect = 7e-19
Identities = 43/94 (45%), Positives = 59/94 (62%), Gaps = 7/94 (7%)
Query: 21 TKNIQDVVKSADILVVGIGQPEYVKGDWIKPGAVVIDCGINSVPDASKASGQKLVGDVQY 80
T +++ ADIL+V +G+P ++ D +K GAVVID GIN V K+VGDV +
Sbjct: 192 TTDLKSHTTKADILIVAVGKPNFITADMVKEGAVVIDVGINHVDG-------KIVGDVDF 244
Query: 81 AEAKNVASWITPVPGGVGPMTVAMLMNNTVLSAE 114
A K+ + ITPVPGGVGPMT+ L+ NT A+
Sbjct: 245 AAVKDKVAAITPVPGGVGPMTITELLYNTFQCAQ 278
>gnl|CDD|133447 cd01079, NAD_bind_m-THF_DH, NAD binding domain of
methylene-tetrahydrofolate dehydrogenase. The
NAD-binding domain of methylene-tetrahydrofolate
dehydrogenase (m-THF DH). M-THF is a versatile carrier
of activated one-carbon units. The major one-carbon
folate donors are N-5 methyltetrahydrofolate,
N5,N10-m-THF, and N10-formayltetrahydrofolate. The
oxidation of metabolic intermediate m-THF to m-THF
requires the enzyme m-THF DH. M-THF DH is a component of
an unusual monofunctional enzyme; in eukaryotes, m-THF
DH is typically found as part of a multifunctional
protein. NADP-dependent m-THF DHs in mammals, birds and
yeast are components of a trifunctional enzyme with DH,
cyclohydrolase, and synthetase activities. Certain
eukaryotic cells also contain homodimeric bifunctional
DH/cyclodrolase form. In bacteria, monofunctional DH, as
well as bifunctional DH/cyclodrolase are found. In
addition, yeast (S. cerevisiae) also express an
monofunctional DH. This family contains only the
monofunctional DHs from S. cerevisiae and certain
bacteria. M-THF DH, like other amino acid DH-like
NAD(P)-binding domains, is a member of the Rossmann fold
superfamily which includes glutamate, leucine, and
phenylalanine DHs, m-THF DH,
methylene-tetrahydromethanopterin DH, m-THF
DH/cyclohydrolase, Shikimate DH-like proteins, malate
oxidoreductases, and glutamyl tRNA reductase. Amino acid
DHs catalyze the deamination of amino acids to keto
acids with NAD(P)+ as a cofactor. The NAD(P)-binding
Rossmann fold superfamily includes a wide variety of
protein families including NAD(P)- binding domains of
alcohol DHs, tyrosine-dependent oxidoreductases,
glyceraldehyde-3-phosphate DH, lactate/malate DHs,
formate/glycerate DHs, siroheme synthases,
6-phosphogluconate DH, amino acid DHs, repressor rex,
NAD-binding potassium channel domain, CoA-binding, and
ornithine cyclodeaminase-like domains. These domains
have an alpha-beta-alpha configuration. NAD binding
involves numerous hydrogen and van der Waals contacts.
Length = 197
Score = 44.0 bits (104), Expect = 5e-05
Identities = 21/86 (24%), Positives = 37/86 (43%), Gaps = 19/86 (22%)
Query: 26 DVVKSADILVVGIGQPEY-VKGDWIKPGAVVIDCGINSVPDASKASGQKLVGDVQYAEAK 84
D + +D+++ G+ P Y V + +K GA+ I+ + K K
Sbjct: 122 DCLSQSDVVITGVPSPNYKVPTELLKDGAICIN-----------FASIKNFE----PSVK 166
Query: 85 NVASWITPVPGGVGPMTVAMLMNNTV 110
AS P +G +T+AML+ N +
Sbjct: 167 EKASIYVPS---IGKVTIAMLLRNLL 189
>gnl|CDD|235738 PRK06199, PRK06199, ornithine cyclodeaminase; Validated.
Length = 379
Score = 35.8 bits (83), Expect = 0.049
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 11/61 (18%)
Query: 4 SLQTFWLWVLAN-PSMSKTK---NIQDVVKSADILVVG----IGQPE---YVKGDWIKPG 52
SL +F WV P ++ + +I++VV+ +DI+ G P YVK +W+KPG
Sbjct: 193 SLDSFATWVAETYPQITNVEVVDSIEEVVRGSDIVTYCNSGETGDPSTYPYVKREWVKPG 252
Query: 53 A 53
A
Sbjct: 253 A 253
>gnl|CDD|197775 smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins.
Length = 56
Score = 31.7 bits (73), Expect = 0.068
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 153 INQLAQEIGLHVSEVSSYGRSKAKISTEVLDRL 185
+LA+++G+ S +S K K S E L +L
Sbjct: 13 QEELAEKLGVSRSTLSRIENGKRKPSLETLKKL 45
>gnl|CDD|217563 pfam03446, NAD_binding_2, NAD binding domain of 6-phosphogluconate
dehydrogenase. The NAD binding domain of
6-phosphogluconate dehydrogenase adopts a Rossmann fold.
Length = 163
Score = 32.8 bits (76), Expect = 0.19
Identities = 23/94 (24%), Positives = 39/94 (41%), Gaps = 22/94 (23%)
Query: 23 NIQDVVKSAD--ILVVGIGQP--EYVKGDW-----IKPGAVVIDCGINSVPDASKASGQK 73
+ + V SAD I +V G + G+ +KPG ++ID S PD ++ ++
Sbjct: 49 SPAEFVASADVVITMVPAGAAVDAVILGEDGLLPGLKPGDIIIDGS-TSDPDDTRRRAKE 107
Query: 74 LVGDVQYAEAKNVASWITPVPGGV-----GPMTV 102
L K + PV GG G +++
Sbjct: 108 L-------AEKGIHFLDAPVSGGEEGAEAGTLSI 134
>gnl|CDD|238045 cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins.
Prokaryotic DNA binding proteins belonging to the
xenobiotic response element family of transcriptional
regulators.
Length = 58
Score = 29.8 bits (68), Expect = 0.36
Identities = 10/36 (27%), Positives = 19/36 (52%)
Query: 153 INQLAQEIGLHVSEVSSYGRSKAKISTEVLDRLKRV 188
+LA+++G+ S +S K S E L++L +
Sbjct: 15 QEELAEKLGVSRSTISRIENGKRNPSLETLEKLAKA 50
>gnl|CDD|201759 pfam01381, HTH_3, Helix-turn-helix. This large family of DNA
binding helix-turn helix proteins includes Cro and CI.
Within the Neisseria gonorrhoeae phage associated
protein NGO0477, the full protein fold incorporates a
helix-turn-helix motif, but the function of this member
is unlikely to be that of a DNA-binding regulator, the
function of most other members, so is not necessarily
characteristic of the whole family.
Length = 55
Score = 29.0 bits (66), Expect = 0.70
Identities = 10/31 (32%), Positives = 18/31 (58%)
Query: 155 QLAQEIGLHVSEVSSYGRSKAKISTEVLDRL 185
+LA+++G+ S +S K + S E L +L
Sbjct: 14 ELAEKLGVSRSTISKIENGKREPSLETLKKL 44
>gnl|CDD|239513 cd03421, SirA_like_N, SirA_like_N, a protein of unknown function
with an N-terminal SirA-like domain. The SirA, YedF,
YeeD protein family is present in bacteria as well as
archaea. SirA (also known as UvrY, and YhhP) belongs
to a family of a two-component response regulators that
controls secondary metabolism and virulence. The other
member of this two-component system is a sensor kinase
called BarA which phosphorylates SirA. A variety of
microorganisms have similar proteins, all of which
contain a common CPxP sequence motif in the N-terminal
region. YhhP is suggested to be important for normal
cell division and growth in rich nutrient medium.
Moreover, despite a low primary sequence similarity,
the YccP structure closely resembles the non-homologous
C-terminal RNA-binding domain of E. coli translation
initiation factor IF3. The signature CPxP motif serves
to stabilize the N-terminal helix as part of the
N-capping box and might be important in mRNA-binding.
Length = 67
Score = 28.3 bits (64), Expect = 1.7
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 447 CPQPVLEKLQKLERLGYGRLTV 468
CPQPV++ + LE G + V
Sbjct: 9 CPQPVIKTKKALELEAGGEIEV 30
>gnl|CDD|240630 cd05305, L-AlaDH, Alanine dehydrogenase NAD-binding and catalytic
domains. Alanine dehydrogenase (L-AlaDH) catalyzes the
NAD-dependent conversion of pyruvate to L-alanine via
reductive amination. Like formate dehydrogenase and
related enzymes, L-AlaDH is comprised of 2 domains
connected by a long alpha helical stretch, each
resembling a Rossmann fold NAD-binding domain. The
NAD-binding domain is inserted within the linear
sequence of the more divergent catalytic domain. Ligand
binding and active site residues are found in the cleft
between the subdomains. L-AlaDH is typically hexameric
and is critical in carbon and nitrogen metabolism in
micro-organisms.
Length = 359
Score = 30.8 bits (71), Expect = 1.7
Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 12/51 (23%)
Query: 17 SMSKTKNIQDVVKSADILVVGIGQP----------EYVKGDWIKPGAVVID 57
S N+++ +K AD+++ + P E VK +KPG+V++D
Sbjct: 218 LYSNPANLEEALKEADLVIGAVLIPGAKAPKLVTEEMVK--TMKPGSVIVD 266
>gnl|CDD|224995 COG2084, MmsB, 3-hydroxyisobutyrate dehydrogenase and related
beta-hydroxyacid dehydrogenases [Lipid metabolism].
Length = 286
Score = 30.2 bits (69), Expect = 2.3
Identities = 19/86 (22%), Positives = 32/86 (37%), Gaps = 17/86 (19%)
Query: 23 NIQDVVKSADILVVGIGQPEYVKG---------DWIKPGAVVIDCGINSVPDASKASGQK 73
+ + AD+++ + V+ + +KPGA+VID S A + +
Sbjct: 50 SPAEAAAEADVVITMLPDDAAVRAVLFGENGLLEGLKPGAIVIDMSTISPETARELA--- 106
Query: 74 LVGDVQYAEAKNVASWITPVPGGVGP 99
AK + PV GGV
Sbjct: 107 -----AALAAKGLEFLDAPVSGGVPG 127
>gnl|CDD|214966 smart01002, AlaDh_PNT_C, Alanine dehydrogenase/PNT, C-terminal
domain. Alanine dehydrogenase catalyzes the
NAD-dependent reversible reductive amination of pyruvate
into alanine.
Length = 149
Score = 29.4 bits (67), Expect = 2.4
Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 12/50 (24%)
Query: 18 MSKTKNIQDVVKSADILVVGIGQP----------EYVKGDWIKPGAVVID 57
S+ + +++ VK AD+++ + P E VK +KPG+V++D
Sbjct: 71 YSQAELLEEAVKEADLVIGAVLIPGAKAPKLVTREMVKS--MKPGSVIVD 118
>gnl|CDD|225635 COG3093, VapI, Plasmid maintenance system antidote protein [General
function prediction only].
Length = 104
Score = 28.9 bits (65), Expect = 2.5
Identities = 8/38 (21%), Positives = 19/38 (50%)
Query: 151 KDINQLAQEIGLHVSEVSSYGRSKAKISTEVLDRLKRV 188
+LA+ +G+ + +S + I+ ++ RL +V
Sbjct: 24 LTQTELAEALGVTRNTISELINGRRAITADMALRLAKV 61
>gnl|CDD|107321 cd06326, PBP1_STKc_like, Type I periplasmic binding domain of
uncharacterized extracellular ligand-binding proteins.
The type I periplasmic binding domain of uncharacterized
extracellular ligand-binding proteins, some of which
contain a conserved catalytic serine/threonine protein
kinase (STKc) domain in the N-terminal region. Members
of this group are sequence-similar to the branched-chain
amino acid ABC transporter
leucine-isoleucine-valine-binding protein (LIVBP); their
ligand specificity has not been determined
experimentally, however.
Length = 336
Score = 30.2 bits (69), Expect = 2.9
Identities = 16/52 (30%), Positives = 21/52 (40%), Gaps = 12/52 (23%)
Query: 298 PDAVVLVTT-------VRALKMHGGGP-----SVVSGQPLKPEYTENTRAVL 337
P AV++V +RAL+ GGG S V L E R V+
Sbjct: 192 PQAVIMVGAYKAAAAFIRALRKAGGGAQFYNLSFVGADALARLLGEYARGVI 243
>gnl|CDD|180421 PRK06141, PRK06141, ornithine cyclodeaminase; Validated.
Length = 314
Score = 29.5 bits (67), Expect = 4.5
Identities = 11/32 (34%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 23 NIQDVVKSADILVVGIGQPE-YVKGDWIKPGA 53
+++ V+ ADI+ E V+G+W+KPG
Sbjct: 182 DLEAAVRQADIISCATLSTEPLVRGEWLKPGT 213
>gnl|CDD|217026 pfam02423, OCD_Mu_crystall, Ornithine cyclodeaminase/mu-crystallin
family. This family contains the bacterial Ornithine
cyclodeaminase enzyme EC:4.3.1.12, which catalyzes the
deamination of ornithine to proline. This family also
contains mu-Crystallin the major component of the eye
lens in several Australian marsupials, mRNA for this
protein has also been found in human retina.
Length = 313
Score = 29.3 bits (66), Expect = 4.8
Identities = 11/33 (33%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 25 QDVVKSADILVVGIGQPE--YVKGDWIKPGAVV 55
++ V+ ADI+V E +K +W+KPG +
Sbjct: 188 EEAVEGADIVVTVTPDKEFPILKAEWVKPGVHI 220
>gnl|CDD|148617 pfam07111, HCR, Alpha helical coiled-coil rod protein (HCR). This
family consists of several mammalian alpha helical
coiled-coil rod HCR proteins. The function of HCR is
unknown but it has been implicated in psoriasis in
humans and is thought to affect keratinocyte
proliferation.
Length = 739
Score = 29.3 bits (65), Expect = 6.0
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Query: 324 PLKPEYTENTRAVLRG--EDSFLLYCKLDSQYLEH 356
L+PE+ R++L E F L +L +Q L H
Sbjct: 295 ILEPEFARKCRSLLSRWREKVFALMVQLKAQELSH 329
>gnl|CDD|225280 COG2423, COG2423, Predicted ornithine cyclodeaminase, mu-crystallin
homolog [Amino acid transport and metabolism].
Length = 330
Score = 28.8 bits (65), Expect = 8.0
Identities = 15/61 (24%), Positives = 27/61 (44%), Gaps = 6/61 (9%)
Query: 23 NIQDVVKSADILV-VGIGQPEYVKGDWIKPGAVVI----DC-GINSVPDASKASGQKLVG 76
+ ++ V+ ADI+V +K +W+KPG + D G + A ++V
Sbjct: 188 SAEEAVEGADIVVTATPSTEPVLKAEWLKPGTHINAIGADAPGKRELDPEVLARADRVVV 247
Query: 77 D 77
D
Sbjct: 248 D 248
>gnl|CDD|153374 cd07362, HPCD_like, Class III extradiol dioxygenases with
similarity to homoprotocatechuate 2,3-dioxygenase, which
catalyzes the key ring cleavage step in the metabolism
of homoprotocatechuate. This subfamily of class III
extradiol dioxygenases consists of two types of
proteins with known enzymatic activities;
3,4-dihydroxyphenylacetate (homoprotocatechuate)
2,3-dioxygenase (HPCD) and 2-amino-5-chlorophenol
1,6-dioxygenase. HPCD catalyzes the key ring cleavage
step in the metabolism of homoprotocatechuate (hpca), a
central intermediate in the bacterial degradation of
aromatic compounds. The enzyme incorporates both atoms
of molecular oxygen into hpca, resulting in aromatic
ring-opening to yield the product
alpha-hydroxy-delta-carboxymethyl cis-muconic
semialdehyde. 2-amino-5-chlorophenol 1,6-dioxygenase
catalyzes the oxidization and subsequent ring-opening of
2-amino-5-chlorophenol, which is an intermediate during
p-chloronitrobenzene degradation. The enzyme is probably
a heterotetramer composed of two alpha and two beta
subunits. Alpha and beta subunits share significant
sequence similarity and both belong to this family. Like
all Class III extradiol dioxygenases, these enzymes use
a non-heme Fe(II) to cleave aromatic rings between a
hydroxylated carbon and an adjacent non-hydroxylated
carbon.
Length = 272
Score = 28.6 bits (64), Expect = 8.4
Identities = 17/71 (23%), Positives = 27/71 (38%), Gaps = 3/71 (4%)
Query: 257 NLAAAQLDARMFHEATQTDQQLYSRLVPTILNIKCRTSGKIPDAV---VLVTTVRALKMH 313
+LA Q+D R + Q ++P SG V V+ + ++H
Sbjct: 198 SLAEQQMDRRFIQLLREGQFQEACNMLPQYARAAGVESGGRHLTVMLGVMQGWGKVAELH 257
Query: 314 GGGPSVVSGQP 324
G GPS +G
Sbjct: 258 GYGPSSGTGNA 268
>gnl|CDD|133449 cd05191, NAD_bind_amino_acid_DH, NAD(P) binding domain of amino
acid dehydrogenase-like proteins. Amino acid
dehydrogenase(DH)-like NAD(P)-binding domains are
members of the Rossmann fold superfamily and are found
in glutamate, leucine, and phenylalanine DHs (DHs),
methylene tetrahydrofolate DH,
methylene-tetrahydromethanopterin DH,
methylene-tetrahydropholate DH/cyclohydrolase,
Shikimate DH-like proteins, malate oxidoreductases, and
glutamyl tRNA reductase. Amino acid DHs catalyze the
deamination of amino acids to keto acids with NAD(P)+
as a cofactor. The NAD(P)-binding Rossmann fold
superfamily includes a wide variety of protein families
including NAD(P)- binding domains of alcohol DHs,
tyrosine-dependent oxidoreductases,
glyceraldehyde-3-phosphate DH, lactate/malate DHs,
formate/glycerate DHs, siroheme synthases,
6-phosphogluconate DH, amino acid DHs, repressor rex,
NAD-binding potassium channel domain, CoA-binding, and
ornithine cyclodeaminase-like domains. These domains
have an alpha-beta-alpha configuration. NAD binding
involves numerous hydrogen and van der Waals contacts.
Length = 86
Score = 27.0 bits (60), Expect = 8.4
Identities = 12/31 (38%), Positives = 13/31 (41%), Gaps = 3/31 (9%)
Query: 32 DILVVGIGQPEYVKGD---WIKPGAVVIDCG 59
DILV V + I GAVVID
Sbjct: 56 DILVTATPAGVPVLEEATAKINEGAVVIDLA 86
>gnl|CDD|129609 TIGR00518, alaDH, alanine dehydrogenase. The family of known
L-alanine dehydrogenases includes representatives from
the Proteobacteria, Firmicutes, and Cyanobacteria, all
with about 50 % identity or better. An outlier to this
group in both sequence and gap pattern is the homolog
from Helicobacter pylori, an epsilon division
Proteobacteria, which must be considered a putative
alanine dehydrogenase. Related proteins include
saccharopine dehydrogenase and the N-terminal half of
the NAD(P) transhydrogenase alpha subunit. All of these
related proteins bind NAD and/or NADP [Energy
metabolism, Amino acids and amines].
Length = 370
Score = 28.7 bits (64), Expect = 8.4
Identities = 31/117 (26%), Positives = 45/117 (38%), Gaps = 17/117 (14%)
Query: 19 SKTKNIQDVVKSAD-----ILVVGIGQPEYVKGDWI---KPGAVVIDCGINSVPDASKAS 70
S I+D VK AD +L+ G P+ V + KPGAV++D I+
Sbjct: 219 SNAYEIEDAVKRADLLIGAVLIPGAKAPKLVSNSLVAQMKPGAVIVDVAIDQ---GGCVE 275
Query: 71 GQKLVGDVQ--YAEAKNVASWITPVPGGVGPMTVAMLMNNTVLSAERYIDRLLKPSW 125
+ Q YA V + +PG V P T + N + Y+ L W
Sbjct: 276 TSRPTTHDQPTYAVHDVVHYCVANMPGAV-PKTSTYALTNATM---PYVLELANHGW 328
>gnl|CDD|200460 cd11321, AmyAc_bac_euk_BE, Alpha amylase catalytic domain found in
bacterial and eukaryotic branching enzymes. Branching
enzymes (BEs) catalyze the formation of alpha-1,6 branch
points in either glycogen or starch by cleavage of the
alpha-1,4 glucosidic linkage yielding a non-reducing end
oligosaccharide chain, and subsequent attachment to the
alpha-1,6 position. By increasing the number of
non-reducing ends, glycogen is more reactive to
synthesis and digestion as well as being more soluble.
This group includes bacterial and eukaryotic proteins.
The Alpha-amylase family comprises the largest family of
glycoside hydrolases (GH), with the majority of enzymes
acting on starch, glycogen, and related oligo- and
polysaccharides. These proteins catalyze the
transformation of alpha-1,4 and alpha-1,6 glucosidic
linkages with retention of the anomeric center. The
protein is described as having 3 domains: A, B, C. A is
a (beta/alpha) 8-barrel; B is a loop between the beta 3
strand and alpha 3 helix of A; C is the C-terminal
extension characterized by a Greek key. The majority of
the enzymes have an active site cleft found between
domains A and B where a triad of catalytic residues
(Asp, Glu and Asp) performs catalysis. Other members of
this family have lost the catalytic activity as in the
case of the human 4F2hc, or only have 2 residues that
serve as the catalytic nucleophile and the acid/base,
such as Thermus A4 beta-galactosidase with 2 Glu
residues (GH42) and human alpha-galactosidase with 2 Asp
residues (GH31). The family members are quite extensive
and include: alpha amylase, maltosyltransferase,
cyclodextrin glycotransferase, maltogenic amylase,
neopullulanase, isoamylase, 1,4-alpha-D-glucan
maltotetrahydrolase, 4-alpha-glucotransferase,
oligo-1,6-glucosidase, amylosucrase, sucrose
phosphorylase, and amylomaltase.
Length = 406
Score = 28.7 bits (65), Expect = 9.4
Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 6/30 (20%)
Query: 495 IHDVYVSAGAGFVVVIAGDISKMPGLGTRP 524
+H++Y + IA D+S MPGL RP
Sbjct: 221 LHELY-----PNAITIAEDVSGMPGL-CRP 244
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.136 0.406
Gapped
Lambda K H
0.267 0.0831 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 28,179,908
Number of extensions: 2798240
Number of successful extensions: 3058
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2993
Number of HSP's successfully gapped: 96
Length of query: 542
Length of database: 10,937,602
Length adjustment: 102
Effective length of query: 440
Effective length of database: 6,413,494
Effective search space: 2821937360
Effective search space used: 2821937360
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (27.1 bits)