RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy7978
(542 letters)
>d1eg7a_ c.37.1.10 (A:) Formyltetrahydrofolate synthetase {Moorella
thermoacetica [TaxId: 1525]}
Length = 549
Score = 232 bits (593), Expect = 5e-70
Identities = 93/255 (36%), Positives = 133/255 (52%), Gaps = 14/255 (5%)
Query: 287 LNIKCRTSGKIPDAVVLVTTVRALKMHGGGPSVVSGQPLKPEY-TENTRAVLRGEDSFLL 345
++KCR +G PDA V+V TVRALKMHGG P K + TEN A+ G +
Sbjct: 308 YDVKCRYAGFKPDATVIVATVRALKMHGGVP--------KSDLATENLEALREGFANLEK 359
Query: 346 YCKLDSQYLEHPPVTMLIYYTYTPAEWEIIRKAAKQAGAHDAVVCENWAKGGAGAADLAD 405
+ + ++ V + + T T AE ++ + +AGA +WAKGG G +LA
Sbjct: 360 HIENIGKFGVPAVVAINAFPTDTEAELNLLYELCAKAGAEV---ALSWAKGGEGGLELAR 416
Query: 406 AVIKATELKDKQFKYLYDIHDPLLTKIQTVAREMYGVHKVDCPQPVLEKLQKLERLGYGR 465
V++ E + F LY++ + KI +A E+YG V+ + +Q+ E LGYG
Sbjct: 417 KVLQTLESRPSNFHVLYNLDLSIKDKIAKIATEIYGADGVNYTAEADKAIQRYESLGYGN 476
Query: 466 LTVCMAKTALSLSGDPTIKGVVPPDYVLPIHDVYVSAGAGFVVVIAGDISKMPGLGTRPS 525
L V MAKT S S D T G P ++ + + +V +SAG +V I G I MPGL RP+
Sbjct: 477 LPVVMAKTQYSFSDDMTKLG-RPRNFTITVREVRLSAGGRLIVPITGAIMTMPGLPKRPA 535
Query: 526 IYDIDIDTRTGEIEG 540
+IDID G I G
Sbjct: 536 ACNIDIDA-DGVITG 549
Score = 163 bits (413), Expect = 2e-44
Identities = 69/148 (46%), Positives = 89/148 (60%), Gaps = 18/148 (12%)
Query: 141 DIDIARAQDPKDINQLAQEIGLHVSEVSSYGRSKAKISTEVLDRLKRVQDGKYII----- 195
DI+IA+A K + +LA+ +G+ EV YG+ KAKIS +V RLK DGK I+
Sbjct: 1 DIEIAQAAKMKPVMELARGLGIQEDEVELYGKYKAKISLDVYRRLKDKPDGKLILVTAIT 60
Query: 196 ------------LFLKLLLLDFGY-TFACVRQPSQGPTFGIKGGAAGGGYSQVIPMEEFN 242
+ L L G C+R+PS GP+FGIKGGAAGGGY+QV+PME+ N
Sbjct: 61 PTPAGEGKTTTSVGLTDALARLGKRVMVCLREPSLGPSFGIKGGAAGGGYAQVVPMEDIN 120
Query: 243 LHLTGDIHAVTAANNLAAAQLDARMFHE 270
LH TGDIHAVT A+NL AA +D +
Sbjct: 121 LHFTGDIHAVTYAHNLLAAMVDNHLQQG 148
>d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate
dehydrogenase/cyclohydrolase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 170
Score = 113 bits (284), Expect = 5e-30
Identities = 67/100 (67%), Positives = 81/100 (81%)
Query: 19 SKTKNIQDVVKSADILVVGIGQPEYVKGDWIKPGAVVIDCGINSVPDASKASGQKLVGDV 78
SKT ++ + V DILVV GQPE VKG+WIKPGA+VIDCGIN VPD K +G+K+VGDV
Sbjct: 71 SKTAHLDEEVNKGDILVVATGQPEMVKGEWIKPGAIVIDCGINYVPDDKKPNGRKVVGDV 130
Query: 79 QYAEAKNVASWITPVPGGVGPMTVAMLMNNTVLSAERYID 118
Y EAK AS+ITPVPGGVGPMTVAMLM +TV SA+R+++
Sbjct: 131 AYDEAKERASFITPVPGGVGPMTVAMLMQSTVESAKRFLE 170
>d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate
dehydrogenase/cyclohydrolase {Escherichia coli [TaxId:
562]}
Length = 166
Score = 108 bits (272), Expect = 2e-28
Identities = 51/116 (43%), Positives = 74/116 (63%), Gaps = 6/116 (5%)
Query: 3 SSLQTFWLWVLANPSMSKTKNIQDVVKSADILVVGIGQPEYVKGDWIKPGAVVIDCGINS 62
S++ + TKN++ V++AD+L+V +G+P ++ GDWIK GA+VID GIN
Sbjct: 53 MSMELLLAGCTTTVTHRFTKNLRHHVENADLLIVAVGKPGFIPGDWIKEGAIVIDVGINR 112
Query: 63 VPDASKASGQKLVGDVQYAEAKNVASWITPVPGGVGPMTVAMLMNNTVLSAERYID 118
+ + K+VGDV + +A AS+ITPVPGGVGPMTVA L+ NT+ + Y D
Sbjct: 113 LENG------KVVGDVVFEDAAKRASYITPVPGGVGPMTVATLIENTLQACVEYHD 162
>d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate
dehydrogenase/cyclohydrolase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 171
Score = 84.8 bits (209), Expect = 8e-20
Identities = 20/102 (19%), Positives = 36/102 (35%), Gaps = 19/102 (18%)
Query: 15 NPSMSKTKNIQDVVKSADILVVGIGQPEY-VKGDWIKPGAVVIDCGINSVPDASKASGQK 73
+ ++ +D+++ G+ Y ++IK GAV I+
Sbjct: 82 DLGEYSEDLLKKCSLDSDVVITGVPSENYKFPTEYIKEGAVCINFACT------------ 129
Query: 74 LVGDVQYAEAKNVASWITPVPGGVGPMTVAMLMNNTVLSAER 115
+ K AS P+ G V T+AML+ N +
Sbjct: 130 ---KNFSDDVKEKASLYVPMTGKV---TIAMLLRNMLRLVRN 165
>d1wb1a2 b.43.3.1 (A:390-468) Elongation factor SelB, domains 2 and
4 {Methanococcus maripaludis [TaxId: 39152]}
Length = 79
Score = 28.3 bits (63), Expect = 0.50
Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Query: 49 IKPGAVVIDCGINSVPD--ASKASGQKLVGDVQYAEAKNVASWITPVPGGVGPMTV 102
++ G V ID G + SK + +KL+G+ E K++ I G G +T
Sbjct: 3 LREGKVKIDKGRTVIDGLAQSKVAAEKLIGEEISIEGKDIVGKIKGTFGTKGLLTA 58
>d1pv9a2 d.127.1.1 (A:125-345) Aminopeptidase P, C-terminal domain
{Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 221
Score = 28.4 bits (62), Expect = 1.9
Identities = 14/59 (23%), Positives = 21/59 (35%), Gaps = 3/59 (5%)
Query: 368 TPAEWEIIRKAAKQAG-AHDAVVCENWAKGGAGAADLADAVIKATELKDKQFKYLYDIH 425
T E EII KA + A A A + G ++A V ++ + I
Sbjct: 2 TKEEIEIIEKACEIADKAVMAAI--EEITEGKREREVAAKVEYLMKMNGAEKPAFDTII 58
>d1chma2 d.127.1.1 (A:157-402) Creatinase, catalytic (C-terminal)
domain {Pseudomonas putida [TaxId: 303]}
Length = 246
Score = 27.7 bits (60), Expect = 3.2
Identities = 10/44 (22%), Positives = 16/44 (36%), Gaps = 3/44 (6%)
Query: 368 TPAEWEIIRKAAKQAG-AHDAVVCENWAKGGAGAADLADAVIKA 410
+ E +IR A+ A AVV ++A +A
Sbjct: 4 SAEEHVMIRHGARIADIGGAAVV--EALGDQVPEYEVALHATQA 45
>d2v3za2 d.127.1.1 (A:177-440) Aminopeptidase P, C-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 264
Score = 27.3 bits (59), Expect = 5.1
Identities = 8/43 (18%), Positives = 14/43 (32%), Gaps = 3/43 (6%)
Query: 369 PAEWEIIRKAAKQAG-AHDAVVCENWAKGGAGAADLADAVIKA 410
P E ++R+A + AH + G L +
Sbjct: 2 PEEIAVLRRAGEITAMAHTRA--MEKCRPGMFEYHLEGEIHHE 42
>d1o0xa_ d.127.1.1 (A:) Methionine aminopeptidase {Thermotoga
maritima [TaxId: 2336]}
Length = 249
Score = 26.9 bits (58), Expect = 5.9
Identities = 19/107 (17%), Positives = 35/107 (32%), Gaps = 3/107 (2%)
Query: 368 TPAEWEIIRKAAKQAG-AHDAVVCENWAKGGAGAADLADAVIKATELKDKQFKYLYDIHD 426
TP+E E ++KA K A V G A D+ V++ + + +
Sbjct: 6 TPSEIEKMKKAGKAVAVALREV--RKVIVPGKTAWDVETLVLEIFKKLRVKPAFKGYGGY 63
Query: 427 PLLTKIQTVAREMYGVHKVDCPQPVLEKLQKLERLGYGRLTVCMAKT 473
T + ++G+ + + + Y L A T
Sbjct: 64 KYATCVSVNEEVVHGLPLKEKVFKEGDIVSVDVGAVYQGLYGDAAVT 110
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.136 0.406
Gapped
Lambda K H
0.267 0.0411 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,040,956
Number of extensions: 96496
Number of successful extensions: 280
Number of sequences better than 10.0: 1
Number of HSP's gapped: 274
Number of HSP's successfully gapped: 15
Length of query: 542
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 452
Effective length of database: 1,171,896
Effective search space: 529696992
Effective search space used: 529696992
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)