Query psy7979
Match_columns 186
No_of_seqs 126 out of 242
Neff 6.2
Searched_HMMs 29240
Date Fri Aug 16 23:43:40 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7979.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7979hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3gs2_A E3 ubiquitin-protein li 99.3 1.2E-11 4.1E-16 91.2 9.8 88 94-182 4-110 (111)
2 2ckl_A Polycomb group ring fin 98.9 2.5E-09 8.5E-14 78.1 5.3 57 11-67 50-106 (108)
3 3h9d_A ATG8, microtubule-assoc 97.5 0.0018 6.2E-08 48.5 11.4 87 92-183 30-116 (119)
4 4gdk_A Ubiquitin-like protein 97.5 0.0014 4.9E-08 46.9 10.0 83 93-183 5-88 (91)
5 3rui_B Autophagy-related prote 97.4 0.0021 7.3E-08 48.1 11.0 87 92-183 29-115 (118)
6 2r2q_A Gamma-aminobutyric acid 97.3 0.0026 8.9E-08 46.9 10.5 84 92-180 26-109 (110)
7 1eo6_A GATE-16, golgi-associat 97.3 0.003 1E-07 47.0 10.7 86 92-182 27-112 (117)
8 3m95_A Autophagy related prote 97.3 0.0029 1E-07 47.8 10.5 86 92-182 35-120 (125)
9 2zjd_A Microtubule-associated 97.2 0.0053 1.8E-07 46.7 11.3 86 92-182 34-121 (130)
10 1wz3_A Autophagy 12B, ATG12B, 96.8 0.011 3.8E-07 42.6 9.1 80 92-182 12-92 (96)
11 3w1s_C Ubiquitin-like protein 96.7 0.014 4.9E-07 41.6 9.2 80 92-182 7-87 (91)
12 2ckl_B Ubiquitin ligase protei 96.3 0.0017 5.9E-08 50.1 2.4 49 11-62 90-138 (165)
13 3n3k_B Ubiquitin; hydrolase, p 95.5 0.02 6.9E-07 38.6 4.7 61 114-181 16-76 (85)
14 3a9j_A Ubiquitin; protein comp 95.4 0.027 9.2E-07 36.9 5.0 46 115-163 14-59 (76)
15 3phx_B Ubiquitin-like protein 95.3 0.03 1E-06 37.5 5.1 46 115-163 18-63 (79)
16 1ndd_A NEDD8, protein (ubiquit 95.3 0.033 1.1E-06 36.5 5.1 59 115-180 14-72 (76)
17 4dwf_A HLA-B-associated transc 95.2 0.089 3.1E-06 36.0 7.4 47 115-164 19-65 (90)
18 3mtn_B UBA80, ubcep1, ubiquiti 95.1 0.029 9.9E-07 37.7 4.7 47 114-163 16-62 (85)
19 2bwf_A Ubiquitin-like protein 95.1 0.036 1.2E-06 36.6 5.1 46 115-163 17-62 (77)
20 1wh3_A 59 kDa 2'-5'-oligoadeny 95.1 0.062 2.1E-06 36.4 6.4 47 115-164 21-67 (87)
21 2dzi_A Ubiquitin-like protein 95.1 0.041 1.4E-06 36.7 5.3 46 115-163 21-66 (81)
22 4eew_A Large proline-rich prot 94.9 0.042 1.4E-06 37.6 5.1 46 115-163 31-76 (88)
23 3dbh_I NEDD8; cell cycle, acti 94.9 0.035 1.2E-06 37.7 4.5 46 115-163 26-71 (88)
24 2kan_A Uncharacterized protein 94.8 0.2 6.7E-06 35.1 8.5 65 88-164 10-75 (94)
25 3k9o_B Ubiquitin, UBB+1; E2-25 94.8 0.044 1.5E-06 38.0 5.0 60 115-181 15-74 (96)
26 3v6c_B Ubiquitin; structural g 94.7 0.047 1.6E-06 37.8 4.9 46 115-163 31-76 (91)
27 2kk8_A Uncharacterized protein 94.7 0.083 2.9E-06 36.3 6.1 47 115-164 24-71 (84)
28 2uyz_B Small ubiquitin-related 94.6 0.089 3E-06 35.0 6.0 48 114-164 16-63 (79)
29 4fbj_B NEDD8; effector-HOST ta 94.6 0.043 1.5E-06 37.9 4.4 60 115-181 14-73 (88)
30 1wx7_A Ubiquilin 3; ubiquitin- 94.4 0.12 4E-06 36.9 6.5 61 92-164 16-76 (106)
31 4hcn_B Polyubiquitin, ubiquiti 94.4 0.052 1.8E-06 38.2 4.6 62 91-163 20-81 (98)
32 1wy8_A NP95-like ring finger p 94.3 0.12 4.1E-06 35.2 6.2 60 115-181 22-82 (89)
33 2fnj_B Transcription elongatio 94.3 0.094 3.2E-06 39.0 5.9 63 114-180 14-80 (118)
34 2l7r_A Ubiquitin-like protein 94.2 0.1 3.5E-06 36.4 5.8 47 115-164 31-77 (93)
35 1wx8_A Riken cDNA 4931431F19; 94.2 0.083 2.8E-06 36.7 5.3 60 92-163 16-75 (96)
36 3fl2_A E3 ubiquitin-protein li 94.2 0.033 1.1E-06 40.7 3.3 37 10-49 86-122 (124)
37 2hj8_A Interferon-induced 17 k 94.1 0.087 3E-06 36.2 5.2 60 115-181 18-77 (88)
38 1sif_A Ubiquitin; hydrophobic 94.1 0.065 2.2E-06 37.0 4.5 47 114-163 22-68 (88)
39 1yqb_A Ubiquilin 3; structural 94.1 0.12 4.1E-06 36.7 6.0 62 91-164 20-81 (100)
40 2kd0_A LRR repeats and ubiquit 94.1 0.086 2.9E-06 36.2 5.1 46 115-163 25-70 (85)
41 3plu_A Ubiquitin-like modifier 94.1 0.078 2.7E-06 37.9 4.9 60 113-179 33-92 (93)
42 2faz_A Ubiquitin-like containi 94.0 0.087 3E-06 34.9 4.8 59 115-180 17-76 (78)
43 1uh6_A Ubiquitin-like 5; beta- 93.9 0.12 4.2E-06 37.2 5.9 57 116-179 43-99 (100)
44 1yx5_B Ubiquitin; proteasome, 93.7 0.096 3.3E-06 36.6 4.8 46 115-163 14-59 (98)
45 1wyw_B Ubiquitin-like protein 93.7 0.16 5.5E-06 35.6 6.0 74 92-180 20-93 (97)
46 1wju_A NEDD8 ultimate buster-1 93.6 0.18 6.1E-06 36.4 6.1 48 113-163 31-78 (100)
47 3vdz_A Ubiquitin-40S ribosomal 93.5 0.13 4.5E-06 37.1 5.5 60 114-180 48-107 (111)
48 2klc_A Ubiquilin-1; ubiquitin- 93.5 0.11 3.8E-06 36.8 4.9 46 115-163 38-83 (101)
49 3m63_B Ubiquitin domain-contai 93.3 0.066 2.3E-06 38.2 3.5 63 89-163 24-86 (101)
50 4ayc_A E3 ubiquitin-protein li 93.3 0.077 2.6E-06 39.6 4.0 46 10-61 86-131 (138)
51 1ttn_A DC-UBP, dendritic cell- 93.3 0.16 5.3E-06 36.3 5.4 46 115-163 37-82 (106)
52 2wyq_A HHR23A, UV excision rep 93.2 0.15 5.1E-06 34.2 5.0 48 115-163 19-67 (85)
53 2daf_A FLJ35834 protein; hypot 92.8 0.2 7E-06 37.3 5.6 46 115-163 30-75 (118)
54 2ojr_A Ubiquitin; lanthide-bin 92.8 0.18 6.2E-06 36.2 5.2 60 115-181 49-108 (111)
55 1wgd_A Homocysteine-responsive 92.7 0.29 9.8E-06 33.8 6.0 48 115-163 23-70 (93)
56 1we7_A SF3A1 protein; structur 92.7 0.24 8.3E-06 35.8 5.8 60 115-181 49-108 (115)
57 1j8c_A Ubiquitin-like protein 92.6 0.18 6.2E-06 37.3 5.2 60 92-163 31-90 (125)
58 3m62_B UV excision repair prot 92.6 0.1 3.4E-06 37.4 3.5 46 115-163 15-60 (106)
59 2kdb_A Homocysteine-responsive 92.2 0.21 7.1E-06 35.7 4.9 48 115-163 39-86 (99)
60 1v5o_A 1700011N24RIK protein; 92.2 0.25 8.4E-06 35.0 5.3 45 116-163 26-71 (102)
61 1uel_A HHR23B, UV excision rep 92.0 0.28 9.6E-06 34.1 5.3 48 115-163 14-62 (95)
62 2kdi_A Ubiquitin, vacuolar pro 91.9 0.22 7.6E-06 36.1 4.8 46 115-163 23-68 (114)
63 3l11_A E3 ubiquitin-protein li 91.8 0.061 2.1E-06 38.7 1.6 40 10-49 49-91 (115)
64 1wxv_A BAG-family molecular ch 91.5 0.54 1.8E-05 32.2 6.3 46 115-163 20-71 (92)
65 3l0w_B Monoubiquitinated proli 91.5 0.3 1E-05 37.9 5.4 46 115-163 14-59 (169)
66 1v5t_A 8430435I17RIK protein; 91.4 0.44 1.5E-05 32.8 5.7 45 116-163 21-69 (90)
67 2lxa_A Ubiquitin-like protein 91.2 0.32 1.1E-05 33.9 4.8 44 118-164 20-64 (87)
68 3b1l_X E3 ubiquitin-protein li 90.5 0.039 1.3E-06 36.4 0.0 47 115-164 14-60 (76)
69 3rt3_B Ubiquitin-like protein 91.0 0.33 1.1E-05 36.6 5.1 61 114-181 94-154 (159)
70 3b08_A Polyubiquitin-C, ubiqui 90.4 0.4 1.4E-05 35.4 5.0 46 115-163 14-59 (152)
71 4dbg_A Ranbp-type and C3HC4-ty 90.4 0.41 1.4E-05 34.8 4.9 45 115-162 40-84 (105)
72 3b08_A Polyubiquitin-C, ubiqui 90.3 0.41 1.4E-05 35.3 5.0 61 114-181 89-149 (152)
73 3u30_A Ubiquitin, linear DI-ub 90.1 0.42 1.4E-05 36.6 5.0 46 115-163 34-79 (172)
74 3rt3_B Ubiquitin-like protein 89.9 0.38 1.3E-05 36.2 4.6 48 115-164 16-64 (159)
75 1we6_A Splicing factor, putati 89.9 0.3 1E-05 35.0 3.8 45 116-163 45-90 (111)
76 3q3f_A Ribonuclease/ubiquitin 89.8 0.36 1.2E-05 38.5 4.6 47 114-163 118-164 (189)
77 4a20_A Ubiquitin-like protein 89.8 0.33 1.1E-05 34.5 3.9 45 116-163 36-81 (98)
78 1wgg_A Ubiquitin carboxyl-term 89.7 0.39 1.3E-05 33.7 4.2 43 116-162 22-64 (96)
79 1v86_A DNA segment, CHR 7, way 88.7 0.49 1.7E-05 33.0 4.1 60 91-163 15-74 (95)
80 4ajy_B Transcription elongatio 88.6 0.66 2.2E-05 34.5 4.9 47 114-163 14-60 (118)
81 3u5e_m 60S ribosomal protein L 87.6 0.11 3.6E-06 38.5 0.0 47 115-164 14-60 (128)
82 2kjr_A CG11242; UBL, ubiquitin 87.6 3.4 0.00012 28.9 8.0 68 88-163 10-82 (95)
83 1wgh_A Ubiquitin-like 3, HCG-1 87.0 2.3 7.9E-05 31.1 7.1 65 90-162 13-82 (116)
84 3u30_A Ubiquitin, linear DI-ub 86.7 0.69 2.4E-05 35.4 4.2 49 113-164 108-156 (172)
85 1x1m_A Ubiquitin-like protein 86.0 1.8 6.2E-05 30.6 5.9 44 121-164 44-87 (107)
86 2y43_A E3 ubiquitin-protein li 85.7 0.47 1.6E-05 32.9 2.6 29 11-43 57-85 (99)
87 1t1h_A Gspef-atpub14, armadill 84.6 0.56 1.9E-05 30.9 2.5 30 10-43 42-71 (78)
88 3a4r_A Nfatc2-interacting prot 84.5 3.4 0.00011 27.8 6.4 49 113-164 20-68 (79)
89 3u5c_f 40S ribosomal protein S 84.4 0.19 6.6E-06 38.7 0.0 47 115-164 14-60 (152)
90 1wia_A Hypothetical ubiquitin- 81.9 0.73 2.5E-05 31.8 2.2 43 115-163 21-64 (95)
91 3ai5_A Yeast enhanced green fl 81.8 1.6 5.6E-05 37.2 4.8 46 115-163 247-292 (307)
92 4b6w_A Tubulin-specific chaper 81.4 0.85 2.9E-05 31.5 2.4 45 116-162 19-69 (86)
93 2djb_A Polycomb group ring fin 79.5 0.91 3.1E-05 29.5 1.9 22 11-32 50-71 (72)
94 1v2y_A 3300001G02RIK protein; 79.4 0.97 3.3E-05 32.6 2.2 48 115-164 21-83 (105)
95 2gow_A HCG-1 protein, ubiquiti 78.6 0.99 3.4E-05 33.6 2.1 51 113-163 29-84 (125)
96 3goe_A DNA repair protein RAD6 78.3 4.5 0.00015 28.1 5.2 61 92-162 8-68 (82)
97 1wm3_A Ubiquitin-like protein 77.7 3.3 0.00011 27.1 4.4 48 113-163 13-60 (72)
98 3ztg_A E3 ubiquitin-protein li 77.4 1.4 4.9E-05 29.8 2.5 31 11-44 50-80 (92)
99 2egp_A Tripartite motif-contai 76.6 0.78 2.7E-05 30.1 0.9 27 10-40 52-78 (79)
100 2kj6_A Tubulin folding cofacto 76.1 5.2 0.00018 28.1 5.3 65 90-162 11-81 (97)
101 1v6e_A Cytoskeleton-associated 75.6 4.1 0.00014 28.0 4.6 46 115-162 22-73 (95)
102 2ecw_A Tripartite motif-contai 74.5 0.79 2.7E-05 30.2 0.5 27 10-40 58-84 (85)
103 2io1_B Small ubiquitin-related 74.0 4.9 0.00017 28.0 4.7 48 113-163 19-66 (94)
104 1chc_A Equine herpes virus-1 r 73.4 0.78 2.7E-05 29.3 0.3 27 11-39 40-66 (68)
105 2ecv_A Tripartite motif-contai 72.7 0.99 3.4E-05 29.7 0.7 27 10-40 58-84 (85)
106 2io0_B Small ubiquitin-related 71.7 5.8 0.0002 27.5 4.5 48 113-163 17-64 (91)
107 2k8h_A Small ubiquitin protein 70.1 7.6 0.00026 28.0 5.0 63 91-164 24-86 (110)
108 1se9_A Ubiquitin family; ubiqu 70.0 4.4 0.00015 30.2 3.8 66 91-163 14-83 (126)
109 2xzm_9 RPS31E; ribosome, trans 69.9 0.93 3.2E-05 36.2 0.0 44 115-161 14-57 (189)
110 1t0y_A Tubulin folding cofacto 68.1 9 0.00031 27.7 5.1 61 93-162 6-72 (122)
111 2d07_B Ubiquitin-like protein 67.8 9.5 0.00032 26.3 5.0 62 91-163 15-76 (93)
112 2dzm_A FAS-associated factor 1 66.7 9.3 0.00032 27.0 4.8 46 116-163 23-68 (100)
113 1oqy_A HHR23A, UV excision rep 63.8 4.1 0.00014 35.5 2.9 48 115-163 21-69 (368)
114 1l8d_A DNA double-strand break 62.3 2.1 7.1E-05 30.5 0.6 13 11-23 47-59 (112)
115 2dzj_A Synaptic glycoprotein S 61.4 4.9 0.00017 27.5 2.4 46 116-162 27-74 (88)
116 1jm7_A BRCA1, breast cancer ty 60.7 6.8 0.00023 27.1 3.1 30 11-44 58-87 (112)
117 1jm7_B BARD1, BRCA1-associated 60.4 5.6 0.00019 28.2 2.7 28 12-43 56-83 (117)
118 1wz0_A Ubiquitin-like protein 57.8 7.2 0.00025 27.8 2.9 62 91-163 22-83 (104)
119 1x3a_A Synapse associated prot 56.4 7.2 0.00025 27.8 2.6 35 29-63 52-86 (100)
120 3lrq_A E3 ubiquitin-protein li 55.7 6.5 0.00022 27.1 2.3 27 12-42 59-85 (100)
121 1g25_A CDK-activating kinase a 55.3 5.7 0.0002 24.9 1.8 17 10-26 42-58 (65)
122 2eke_C Ubiquitin-like protein 55.2 16 0.00056 26.1 4.4 61 91-163 29-89 (106)
123 3kyd_D Small ubiquitin-related 54.3 17 0.00059 26.5 4.5 61 92-163 39-99 (115)
124 2kre_A Ubiquitin conjugation f 53.5 8 0.00027 27.1 2.5 29 11-43 63-91 (100)
125 2kr4_A Ubiquitin conjugation f 53.3 8.1 0.00028 26.0 2.4 29 11-43 48-76 (85)
126 1oey_A P67-PHOX, neutrophil cy 53.0 25 0.00084 24.2 4.8 60 114-180 16-81 (83)
127 2k4x_A 30S ribosomal protein S 53.0 7.3 0.00025 24.8 2.0 20 2-21 9-28 (55)
128 1rmd_A RAG1; V(D)J recombinati 52.8 8.7 0.0003 27.0 2.6 30 11-43 58-87 (116)
129 1ip9_A BEM1 protein; ubiquitin 52.2 27 0.00093 24.3 4.9 39 115-157 25-63 (85)
130 1wgm_A Ubiquitin conjugation f 51.0 9 0.00031 26.7 2.4 29 11-43 57-85 (98)
131 3vhs_A ATPase wrnip1; zinc fin 50.9 2 6.9E-05 23.6 -0.8 13 12-24 7-19 (29)
132 2jxx_A Nfatc2-interacting prot 50.4 46 0.0016 23.3 6.1 62 92-163 24-85 (97)
133 3j20_Y 30S ribosomal protein S 47.4 5 0.00017 25.1 0.5 18 3-20 11-28 (50)
134 2e72_A POGO transposable eleme 45.2 3.8 0.00013 25.7 -0.3 17 10-26 11-27 (49)
135 1wf9_A NPL4 family protein; be 44.6 8.8 0.0003 27.0 1.5 46 115-163 20-81 (107)
136 2csy_A Zinc finger protein 183 44.1 11 0.00036 24.7 1.8 12 11-22 49-60 (81)
137 3hct_A TNF receptor-associated 43.1 11 0.00038 26.6 1.9 29 12-44 54-82 (118)
138 3shq_A UBLCP1; phosphatase, hy 43.1 17 0.0006 30.8 3.4 61 91-163 3-66 (320)
139 2kiz_A E3 ubiquitin-protein li 42.0 12 0.00041 23.5 1.7 14 12-25 52-65 (69)
140 1wd2_A Ariadne-1 protein homol 41.5 12 0.0004 24.1 1.6 18 8-25 3-20 (60)
141 2i5o_A DNA polymerase ETA; zin 41.2 5.9 0.0002 23.6 0.1 13 10-22 8-20 (39)
142 2apo_B Ribosome biogenesis pro 41.0 12 0.00042 24.3 1.6 24 11-35 18-41 (60)
143 3pge_A SUMO-modified prolifera 40.1 39 0.0013 26.9 4.8 61 91-163 27-87 (200)
144 1wjn_A Tubulin-folding protein 38.8 36 0.0012 23.1 3.9 27 116-144 27-53 (97)
145 2ct2_A Tripartite motif protei 36.4 14 0.00049 24.1 1.5 13 11-23 56-68 (88)
146 1e4u_A Transcriptional repress 36.1 21 0.00071 23.7 2.3 20 10-30 49-68 (78)
147 2yu4_A E3 SUMO-protein ligase 35.4 22 0.00077 24.1 2.4 29 11-43 48-79 (94)
148 2aus_D NOP10, ribosome biogene 35.4 15 0.0005 24.0 1.3 24 11-35 17-40 (60)
149 3knv_A TNF receptor-associated 34.8 8.6 0.0003 28.5 0.1 33 11-43 66-103 (141)
150 2ect_A Ring finger protein 126 34.4 20 0.00068 23.0 1.9 16 11-26 52-67 (78)
151 2kzr_A Ubiquitin thioesterase 33.8 31 0.0011 22.9 2.9 45 116-163 14-64 (86)
152 1iym_A EL5; ring-H2 finger, ub 32.2 17 0.0006 21.5 1.2 12 10-21 42-53 (55)
153 1vd2_A Protein kinase C, IOTA 32.2 1.2E+02 0.0042 20.8 6.1 62 113-178 17-85 (89)
154 2pnv_A Small conductance calci 31.9 17 0.00059 22.1 1.1 16 35-50 2-17 (43)
155 1zfo_A LAsp-1; LIM domain, zin 31.8 24 0.00081 19.4 1.7 12 11-22 3-14 (31)
156 3hcs_A TNF receptor-associated 31.7 22 0.00076 26.5 2.0 29 12-44 54-82 (170)
157 2ep4_A Ring finger protein 24; 29.7 27 0.00092 22.1 1.9 15 11-25 52-66 (74)
158 3po0_A Small archaeal modifier 29.2 30 0.001 23.0 2.2 45 115-160 21-74 (89)
159 3i2d_A E3 SUMO-protein ligase 28.7 22 0.00077 31.1 1.7 30 10-43 287-316 (371)
160 6rxn_A Rubredoxin; electron tr 28.4 24 0.0008 21.6 1.3 13 8-20 27-39 (46)
161 3ng2_A RNF4, snurf, ring finge 28.3 23 0.00079 22.0 1.4 13 11-23 51-63 (71)
162 2ecy_A TNF receptor-associated 27.9 28 0.00097 21.5 1.7 14 10-23 49-62 (66)
163 2xeu_A Ring finger protein 4; 27.4 24 0.00083 21.3 1.3 13 11-23 44-56 (64)
164 1v87_A Deltex protein 2; ring- 26.9 25 0.00086 24.3 1.5 15 9-23 80-94 (114)
165 3tix_A Ubiquitin-like protein 26.9 42 0.0015 27.0 2.9 61 91-163 55-115 (207)
166 4a3p_A Ubiquitin carboxyl-term 26.8 1.1E+02 0.0038 24.0 5.5 50 115-166 143-198 (217)
167 2yho_A E3 ubiquitin-protein li 26.7 18 0.0006 24.0 0.6 27 12-39 50-76 (79)
168 2ysl_A Tripartite motif-contai 26.6 32 0.0011 21.5 1.9 13 10-22 56-68 (73)
169 2ecn_A Ring finger protein 141 26.1 17 0.00057 22.9 0.3 15 10-24 47-61 (70)
170 2ea6_A Ring finger protein 4; 25.0 26 0.00089 21.5 1.2 12 11-22 56-67 (69)
171 4fo9_A E3 SUMO-protein ligase 24.4 30 0.001 30.1 1.8 30 10-43 253-282 (360)
172 2ecl_A Ring-box protein 2; RNF 23.8 28 0.00096 22.9 1.2 13 10-22 63-75 (81)
173 2q5w_D Molybdopterin convertin 23.7 37 0.0013 21.8 1.8 42 117-160 21-62 (77)
174 2vje_A E3 ubiquitin-protein li 23.6 28 0.00095 21.9 1.1 14 10-23 44-57 (64)
175 2jvx_A NF-kappa-B essential mo 22.7 24 0.00081 19.4 0.5 11 11-21 3-13 (28)
176 4ap4_A E3 ubiquitin ligase RNF 22.5 47 0.0016 23.0 2.3 21 10-31 47-67 (133)
177 2vje_B MDM4 protein; proto-onc 22.5 31 0.001 21.6 1.1 13 11-23 44-56 (63)
178 2bps_A YUKD protein; ubiquitin 22.4 51 0.0017 22.4 2.3 48 115-162 20-69 (81)
179 2juo_A GA-binding protein alph 22.0 68 0.0023 22.3 2.9 39 121-162 12-50 (89)
180 2daj_A KIAA0977 protein, COBL- 22.0 1.3E+02 0.0044 21.0 4.3 70 90-170 7-82 (91)
181 2d8t_A Dactylidin, ring finger 21.9 36 0.0012 21.4 1.4 13 11-23 49-61 (71)
182 1vjk_A Molybdopterin convertin 21.6 67 0.0023 21.8 2.9 45 115-160 30-83 (98)
183 1x4j_A Ring finger protein 38; 21.0 36 0.0012 21.6 1.3 11 11-21 60-70 (75)
No 1
>3gs2_A E3 ubiquitin-protein ligase RING2; RING1B, CBOX, CBX7, polycomb, E3-ligase, chromosomal protein transcription regulation, chromatin regulator; 1.70A {Homo sapiens} PDB: 3ixs_A* 3h8h_A*
Probab=99.31 E-value=1.2e-11 Score=91.18 Aligned_cols=88 Identities=24% Similarity=0.444 Sum_probs=65.5
Q ss_pred eeEEEEeccCCCCccccccccEEEecccccHHHHHHHHHHHhhcCC-C-------------CCceEEEEeC---C--Eec
Q psy7979 94 VNVYLECSVATTSSLKTLKKRFIRLSSQATITHLKKFVALKLLDEK-S-------------KYKEIDILCN---D--ELL 154 (186)
Q Consensus 94 vsl~LE~~~~~~~~l~~l~~~ylrcs~~~tV~hLkKfL~~Kl~~~l-~-------------~~~~veIlc~---~--~~L 154 (186)
|.|.+.+++..-..=.....|||+++++|||.||.||||+|++++. . +..+..|++. | ..|
T Consensus 4 iELVFrPHPt~~~~d~~~~~RYIKTt~nATVDHLsKYLA~Rl~Le~~~~~~e~~~~~~~~~~~~~~~IYia~~~gq~~~L 83 (111)
T 3gs2_A 4 IELVFRPHPTLMEKDDSAQTRYIKTSGNATVDHLSKYLAVRLALEELRSKGESNQMNLDTASEKQYTIYIATASGQFTVL 83 (111)
T ss_dssp EEEEEEECTTTSCCCTTCCCEEEEEETTCBHHHHHHHHHHHHHHHHHHHHHHSSCCSCCC--CCCEEEEEECTTSCEEEC
T ss_pred eEEEecCCcccccccchhceEEEEcCCCccHHHHHHHHHHHHhHHHhhccccccccCccccceeeeEEEEccCCCeEEEc
Confidence 5566666543211101236699999999999999999999996652 1 2336667764 3 489
Q ss_pred CCCCcHHHHHHHhccCCCCCeeEEEeec
Q psy7979 155 GKDHTLKFVYITRWRFRTPPLKLQYRPR 182 (186)
Q Consensus 155 ~~~~TL~~I~~~~W~~~~~Pm~L~Yr~~ 182 (186)
..++||+.|...+|+. +.||.|+|.++
T Consensus 84 ~gs~tLe~VneKywkv-nkplelYYa~~ 110 (111)
T 3gs2_A 84 DGSFSLELVSEKYWKV-NKPMELYYAPT 110 (111)
T ss_dssp CTTSBHHHHHHHHTCS-SSCEEEEEEEC
T ss_pred cCcccHHHHhhhhccC-CCCeeEEeccc
Confidence 9999999999999997 89999999864
No 2
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=98.86 E-value=2.5e-09 Score=78.09 Aligned_cols=57 Identities=46% Similarity=0.832 Sum_probs=51.7
Q ss_pred CCCCCcccccccccCCccccccchhHHhhhHhhcccchhhHHHHHHHHHHHhCCCCC
Q psy7979 11 KNTCPSCNIIIHQSHPLQYISFDRTMQDLVYKLVPNLQANEMKREREFYRIRGLPCP 67 (186)
Q Consensus 11 ~~~CP~C~~~ih~s~Pl~~i~~D~tLQdIVyKLVPgL~~~E~~rr~eFy~~~~~~~p 67 (186)
+..||.|...+....|+..++.|.+|++||.+++|++++.|..+|++||+++|...|
T Consensus 50 ~~~CP~Cr~~~~~~~~~~~l~~n~~l~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~p 106 (108)
T 2ckl_A 50 SKYCPICDVQVHKTRPLLNIRSDKTLQDIVYKLVPGLFKNEMKRRRDFYAAHPSADA 106 (108)
T ss_dssp CSBCTTTCCBSCSSCGGGGEEECHHHHHHHHHHSTTHHHHHHHHHHHHHHHSCC---
T ss_pred CCcCcCCCccccccCcccccCcCHHHHHHHHHHhhhHHHHHHHhHHHHHHhCccccC
Confidence 478999999999889999999999999999999999999999999999999987543
No 3
>3h9d_A ATG8, microtubule-associated protein 1A/1B, light chain putative; autophagy, lipidation, ubiquitin-like, S protein; 2.30A {Trypanosoma brucei} SCOP: d.15.1.0
Probab=97.49 E-value=0.0018 Score=48.54 Aligned_cols=87 Identities=13% Similarity=0.148 Sum_probs=72.0
Q ss_pred CceeEEEEeccCCCCccccccccEEEecccccHHHHHHHHHHHhhcCCCCCceEEEEeCCEecCCCCcHHHHHHHhccCC
Q psy7979 92 EQVNVYLECSVATTSSLKTLKKRFIRLSSQATITHLKKFVALKLLDEKSKYKEIDILCNDELLGKDHTLKFVYITRWRFR 171 (186)
Q Consensus 92 e~vsl~LE~~~~~~~~l~~l~~~ylrcs~~~tV~hLkKfL~~Kl~~~l~~~~~veIlc~~~~L~~~~TL~~I~~~~W~~~ 171 (186)
+.|-+.+|..+ .+.++.+.++=..+|+.+||+++..+|+++| .|+....+=+++|+...+.+.||.+||...=..
T Consensus 30 ~rIPVIvEr~~--~~~~P~Ldk~KflVp~~~tv~qf~~~iRkrl--~l~~~~alFl~Vn~~~p~~~~~m~~lY~~~kd~- 104 (119)
T 3h9d_A 30 DRLPIICEKVY--NSDIGELDRCKFLVPSDLTVGQFVSVLRKRV--QLEAESALFVYTNDTVLPSSAQMADIYSKYKDE- 104 (119)
T ss_dssp TEEEEEEEECT--TSSCCCCSSCEEEEETTCBHHHHHHHHHHHH--TCCTTSCCEEEETTEECCTTSBHHHHHHHHCCT-
T ss_pred CeEEEEEEecC--CCCCCccCcceEEcCCCCCHHHHHHHHHHHh--CCCccceEEEEECCcCCCccchHHHHHHHcCCC-
Confidence 46888998864 3558888887778999999999999999999 888887888999998777888999999766543
Q ss_pred CCCeeEEEeecc
Q psy7979 172 TPPLKLQYRPRI 183 (186)
Q Consensus 172 ~~Pm~L~Yr~~~ 183 (186)
++-|-+.|.-..
T Consensus 105 DGfLyv~Ys~e~ 116 (119)
T 3h9d_A 105 DGFLYMKYSGEA 116 (119)
T ss_dssp TSCEEEEEECC-
T ss_pred CCeEEEEEeccc
Confidence 789999997543
No 4
>4gdk_A Ubiquitin-like protein ATG12; protein-protein conjugate, protein-protein complex, ubiquiti protein, E3 ligase, ubiquitin-like fold; 2.70A {Homo sapiens} PDB: 4gdl_A
Probab=97.45 E-value=0.0014 Score=46.87 Aligned_cols=83 Identities=17% Similarity=0.191 Sum_probs=67.7
Q ss_pred ceeEEEEeccCCCCccccccccEEEecccccHHHHHHHHHHHhhcCCCCCceEEEEeCCEecCC-CCcHHHHHHHhccCC
Q psy7979 93 QVNVYLECSVATTSSLKTLKKRFIRLSSQATITHLKKFVALKLLDEKSKYKEIDILCNDELLGK-DHTLKFVYITRWRFR 171 (186)
Q Consensus 93 ~vsl~LE~~~~~~~~l~~l~~~ylrcs~~~tV~hLkKfL~~Kl~~~l~~~~~veIlc~~~~L~~-~~TL~~I~~~~W~~~ 171 (186)
-|.|.+-.. +++|.+.++=..+|+..||+++.+||+++| .++....+=+++|+..++. +.||.++|...- .
T Consensus 5 Kv~v~fk~~----g~~P~l~k~KflVp~~~tv~~~~~~lRkrL--~l~~~~alFlyVnn~~~P~~d~~~~~Ly~~~k-~- 76 (91)
T 4gdk_A 5 KIDILLKAV----GDTPIMKTKKWAVERTRTIQGLIDFIKKFL--KLVASEQLFIYVNQSFAPSPDQEVGTLYECFG-S- 76 (91)
T ss_dssp EEEEEEEEC----SSSCCCSCCEEEEETTCBHHHHHHHHHHHT--TCCSSSCCEEEETTTBCCCTTCBHHHHHHHHC-B-
T ss_pred eEEEEEEec----CCCCcccccEEEcCCCCCHHHHHHHHHHHh--CCCCCCeEEEEECCccCCChhhHHHHHHHHhC-C-
Confidence 366666543 368889998899999999999999999999 8888878888999866555 889999987664 4
Q ss_pred CCCeeEEEeecc
Q psy7979 172 TPPLKLQYRPRI 183 (186)
Q Consensus 172 ~~Pm~L~Yr~~~ 183 (186)
++-|.+.|.-..
T Consensus 77 DGfLyv~Ys~~~ 88 (91)
T 4gdk_A 77 DGKLVLHYCKSQ 88 (91)
T ss_dssp TTEEEEEEESSC
T ss_pred CCEEEEEEeCcc
Confidence 789999997543
No 5
>3rui_B Autophagy-related protein 8; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} SCOP: d.15.1.3 PDB: 2kq7_A 2zpn_A 3vxw_A 2kwc_A 2li5_A 3vh3_B 3vh4_B*
Probab=97.41 E-value=0.0021 Score=48.06 Aligned_cols=87 Identities=17% Similarity=0.183 Sum_probs=70.6
Q ss_pred CceeEEEEeccCCCCccccccccEEEecccccHHHHHHHHHHHhhcCCCCCceEEEEeCCEecCCCCcHHHHHHHhccCC
Q psy7979 92 EQVNVYLECSVATTSSLKTLKKRFIRLSSQATITHLKKFVALKLLDEKSKYKEIDILCNDELLGKDHTLKFVYITRWRFR 171 (186)
Q Consensus 92 e~vsl~LE~~~~~~~~l~~l~~~ylrcs~~~tV~hLkKfL~~Kl~~~l~~~~~veIlc~~~~L~~~~TL~~I~~~~W~~~ 171 (186)
+.|-+.+|..+ .+.++.+.++=..+|+.+||+++..+|+++| .+++...+=+++|+...+.+.||.+||...=. .
T Consensus 29 ~riPVIvE~~~--~~~~P~ldk~KflVp~~~tv~qf~~~iRkrl--~l~~~~alFl~Vn~~~p~~~~~m~~lY~~~kd-e 103 (118)
T 3rui_B 29 NRIPVICEKAE--KSDIPEIDKRKYLVPADLTVGQFVYVIRKRI--MLPPEKAIFIFVNDTLPPTAALMSAIYQEHKD-K 103 (118)
T ss_dssp SEEEEEEEECT--TCCSCCCSCCEEEEETTSBHHHHHHHHHHHT--TCCTTCCEEEEBTTBCCCTTSBHHHHHHHHCC-T
T ss_pred CceEEEEEeCC--CCCCCccccceEEcCCCCCHHHHHHHHHHHh--CcCCCccEEEEECCccCCccchHHHHHHHcCC-C
Confidence 46888898873 4467888776666999999999999999999 88887788888998767778888999976654 4
Q ss_pred CCCeeEEEeecc
Q psy7979 172 TPPLKLQYRPRI 183 (186)
Q Consensus 172 ~~Pm~L~Yr~~~ 183 (186)
++-|-+.|.-..
T Consensus 104 DGfLyv~Ys~~~ 115 (118)
T 3rui_B 104 DGFLYVTYSGEN 115 (118)
T ss_dssp TSCEEEEEEECC
T ss_pred CCeEEEEEeccc
Confidence 789999997543
No 6
>2r2q_A Gamma-aminobutyric acid receptor-associated protein-like 1; autophagy, ubiquitin homolog, structural genomics consortium, SGC, microtubule; 1.65A {Homo sapiens} PDB: 2l8j_A 1kjt_A 1kot_A 3d32_A 3dow_A 1gnu_A 1klv_A 1km7_A
Probab=97.33 E-value=0.0026 Score=46.86 Aligned_cols=84 Identities=15% Similarity=0.176 Sum_probs=69.1
Q ss_pred CceeEEEEeccCCCCccccccccEEEecccccHHHHHHHHHHHhhcCCCCCceEEEEeCCEecCCCCcHHHHHHHhccCC
Q psy7979 92 EQVNVYLECSVATTSSLKTLKKRFIRLSSQATITHLKKFVALKLLDEKSKYKEIDILCNDELLGKDHTLKFVYITRWRFR 171 (186)
Q Consensus 92 e~vsl~LE~~~~~~~~l~~l~~~ylrcs~~~tV~hLkKfL~~Kl~~~l~~~~~veIlc~~~~L~~~~TL~~I~~~~W~~~ 171 (186)
+.|-+.+|..+ +++++.+.++=..+|+.+||+++..+|+++| .++....+=+++|+...+.+.||.++|...-..
T Consensus 26 ~~IPVive~~~--~~~~p~l~k~KflVp~~~tv~~~~~~iRk~l--~l~~~~alfl~vn~~~p~~~~~m~~LY~~~kd~- 100 (110)
T 2r2q_A 26 DRVPVIVEKAP--KARVPDLDKRKYLVPSDLTVGQFYFLIRKRI--HLRPEDALFFFVNNTIPPTSATMGQLYEDNHEE- 100 (110)
T ss_dssp TEEEEEEEECT--TCCSCCCSCCEEEEETTCBHHHHHHHHHHHT--TCCTTSCCEEEBTTBCCCTTSBHHHHHHHHCCT-
T ss_pred CceEEEEEecC--CCCCCccceeEEEeCCCCcHHHHHHHHHHHh--cCCCCCcEEEEECCEecCccChHHHHHHHcCCC-
Confidence 46889998763 3457888887788999999999999999999 888887787888998778888899998766333
Q ss_pred CCCeeEEEe
Q psy7979 172 TPPLKLQYR 180 (186)
Q Consensus 172 ~~Pm~L~Yr 180 (186)
++-|.+.|.
T Consensus 101 DGfLyi~Ys 109 (110)
T 2r2q_A 101 DYFLYVAYS 109 (110)
T ss_dssp TSCEEEEEE
T ss_pred CCEEEEEEe
Confidence 789999985
No 7
>1eo6_A GATE-16, golgi-associated ATPase enhancer of 16 KD; ubiquitin fold, protein binding; 1.80A {Bos taurus} SCOP: d.15.1.3
Probab=97.30 E-value=0.003 Score=47.03 Aligned_cols=86 Identities=16% Similarity=0.188 Sum_probs=69.2
Q ss_pred CceeEEEEeccCCCCccccccccEEEecccccHHHHHHHHHHHhhcCCCCCceEEEEeCCEecCCCCcHHHHHHHhccCC
Q psy7979 92 EQVNVYLECSVATTSSLKTLKKRFIRLSSQATITHLKKFVALKLLDEKSKYKEIDILCNDELLGKDHTLKFVYITRWRFR 171 (186)
Q Consensus 92 e~vsl~LE~~~~~~~~l~~l~~~ylrcs~~~tV~hLkKfL~~Kl~~~l~~~~~veIlc~~~~L~~~~TL~~I~~~~W~~~ 171 (186)
+.|-+.+|..+ +++++.+.++=..+|+.+||+++..+|+++| .++....+=+++|+...+.+.||.++|...-. .
T Consensus 27 ~~IPVIve~~~--~s~~p~l~k~KflVp~~~tv~~f~~~iRk~l--~l~~~~alfl~vn~~~p~~~~~m~~LY~~~kd-~ 101 (117)
T 1eo6_A 27 DRVPVIVEKVS--GSQIVDIDKRKYLVPSDITVAQFMWIIRKRI--QLPSEKAIFLFVDKTVPQSSLTMGQLYEKEKD-E 101 (117)
T ss_dssp TEEEEEEEECT--TCSSCCCSCCEEEEETTSBHHHHHHHHHHHH--TCCTTSCCEEEBTTBCCCTTSBHHHHHHHHCC-T
T ss_pred CeEEEEEEecC--CCCCCcccceEEEcCCCCCHHHHHHhhHHhh--cCCCCCcEEEEECCEecCccchHHHHHHHhCC-C
Confidence 46888898763 3447777765557999999999999999999 88888778788899877888889999876633 3
Q ss_pred CCCeeEEEeec
Q psy7979 172 TPPLKLQYRPR 182 (186)
Q Consensus 172 ~~Pm~L~Yr~~ 182 (186)
++-|.+.|.-.
T Consensus 102 DGfLyi~Ys~~ 112 (117)
T 1eo6_A 102 DGFLYVAYSGE 112 (117)
T ss_dssp TSCEEEEEECC
T ss_pred CCEEEEEEeCC
Confidence 78999999754
No 8
>3m95_A Autophagy related protein ATG8; alpha slash beta, receptor, transport protein; 2.40A {Bombyx mori} SCOP: d.15.1.3
Probab=97.29 E-value=0.0029 Score=47.81 Aligned_cols=86 Identities=14% Similarity=0.154 Sum_probs=70.9
Q ss_pred CceeEEEEeccCCCCccccccccEEEecccccHHHHHHHHHHHhhcCCCCCceEEEEeCCEecCCCCcHHHHHHHhccCC
Q psy7979 92 EQVNVYLECSVATTSSLKTLKKRFIRLSSQATITHLKKFVALKLLDEKSKYKEIDILCNDELLGKDHTLKFVYITRWRFR 171 (186)
Q Consensus 92 e~vsl~LE~~~~~~~~l~~l~~~ylrcs~~~tV~hLkKfL~~Kl~~~l~~~~~veIlc~~~~L~~~~TL~~I~~~~W~~~ 171 (186)
+.|-+.+|..+ .+.++.+.++=..+|+.+||+.+..+|+++| .|++...+=+++|+...+.+.||.+||...=..
T Consensus 35 ~rIPVIvEr~~--~s~lP~LdK~KflVp~~~tv~qf~~~IRkrl--~L~~~~alFl~Vnn~lPs~s~~m~~lY~~~kde- 109 (125)
T 3m95_A 35 DRVPVIVEKAP--KARLGDLDKKKYLVPSDLTVGQFYFLIRKRI--HLRPEDALFFFVNNVIPPTSATMGSLYQEHHDE- 109 (125)
T ss_dssp TEEEEEEEECT--TCSSCCCSCCEEEEETTSBHHHHHHHHHHHT--TCCTTSCCEEEBTTBCCCTTSBHHHHHHHHCCT-
T ss_pred CeEEEEEEecC--CCCCccccCCEEEcCCCCEeeeehhhhHhhc--CCCccccEEEEECCccCCccchHHHHHHHcCCC-
Confidence 46888898864 3457888776677999999999999999999 888887787889987777788899999776553
Q ss_pred CCCeeEEEeec
Q psy7979 172 TPPLKLQYRPR 182 (186)
Q Consensus 172 ~~Pm~L~Yr~~ 182 (186)
++-|-+.|+-.
T Consensus 110 DGfLY~~Ys~e 120 (125)
T 3m95_A 110 DFFLYIAFSDE 120 (125)
T ss_dssp TSCEEEEEESS
T ss_pred CCeEEEEecCc
Confidence 78999999754
No 9
>2zjd_A Microtubule-associated proteins 1A/1B light chain 3B precursor; autophagy, LC3, microtubule-associated protein 1 light chain 3, cytoplasm, cytoplasmic vesicle, lipoprotein; 1.56A {Homo sapiens} SCOP: d.15.1.3 PDB: 2z0e_B 2zzp_B 2z0d_B 1ugm_A 1v49_A 2k6q_A 3eci_A
Probab=97.21 E-value=0.0053 Score=46.66 Aligned_cols=86 Identities=14% Similarity=0.201 Sum_probs=68.6
Q ss_pred CceeEEEEeccCCCCc-cccccccEEEecccccHHHHHHHHHHHhhcCCCCCceEEE-EeCCEecCCCCcHHHHHHHhcc
Q psy7979 92 EQVNVYLECSVATTSS-LKTLKKRFIRLSSQATITHLKKFVALKLLDEKSKYKEIDI-LCNDELLGKDHTLKFVYITRWR 169 (186)
Q Consensus 92 e~vsl~LE~~~~~~~~-l~~l~~~ylrcs~~~tV~hLkKfL~~Kl~~~l~~~~~veI-lc~~~~L~~~~TL~~I~~~~W~ 169 (186)
+.|-+.+|..+ ++. ++.+.++=..+|+.+||+++..+|+++| .++....+=+ ++|+...+.+.||.++|...=.
T Consensus 34 ~kIPVIvEk~~--~s~~~P~Ldk~KflVp~~~tv~qf~~~iRkrL--~l~~~~alFl~~vn~~~p~~~~~m~~lY~~~kd 109 (130)
T 2zjd_A 34 TKIPVIIERYK--GEKQLPVLDKTKFLVPDHVNMSELIKIIRRRL--QLNANQAFFLLVNGHSMVSVSTPISEVYESEKD 109 (130)
T ss_dssp TEEEEEEEECT--TCCSSCCCSCCEEEEETTCBHHHHHHHHHHHH--TCCTTCCEEEEETTTEECCTTSBHHHHHHHHCC
T ss_pred CceEEEEEEcC--CCCcCccccccEEEcCCCCcHHHHHHHHHHHh--CCCCCceEEEEEECCccCCccchHHHHHHHhCC
Confidence 46889998763 344 7777766667999999999999999999 8888877767 7788877888889999876633
Q ss_pred CCCCCeeEEEeec
Q psy7979 170 FRTPPLKLQYRPR 182 (186)
Q Consensus 170 ~~~~Pm~L~Yr~~ 182 (186)
.++-|.+.|.-.
T Consensus 110 -eDGfLyv~Ys~e 121 (130)
T 2zjd_A 110 -EDGFLYMVYASQ 121 (130)
T ss_dssp -TTSCEEEEEEEH
T ss_pred -CCCEEEEEEeCC
Confidence 378999999753
No 10
>1wz3_A Autophagy 12B, ATG12B, APG12B; ubiquitin-fold, plant protein; 1.80A {Arabidopsis thaliana} SCOP: d.15.1.7
Probab=96.75 E-value=0.011 Score=42.56 Aligned_cols=80 Identities=15% Similarity=0.168 Sum_probs=63.8
Q ss_pred CceeEEEEeccCCCCccccccccEEEecccccHHHHHHHHHHHhhcCCCCCceEEEEeCC-EecCCCCcHHHHHHHhccC
Q psy7979 92 EQVNVYLECSVATTSSLKTLKKRFIRLSSQATITHLKKFVALKLLDEKSKYKEIDILCND-ELLGKDHTLKFVYITRWRF 170 (186)
Q Consensus 92 e~vsl~LE~~~~~~~~l~~l~~~ylrcs~~~tV~hLkKfL~~Kl~~~l~~~~~veIlc~~-~~L~~~~TL~~I~~~~W~~ 170 (186)
+.|.|.++.. + +++.+.++=..+|+..||+++-+||+++| .++ .+=+++|+ ..-..+.||.++|...-.
T Consensus 12 ~KV~V~~~~~---~-~~P~l~k~KflV~~~~t~~~~~~~lRkrL--~l~---alFlyvn~~~~Ps~d~~m~~LY~~~kd- 81 (96)
T 1wz3_A 12 QKIVVHLRAT---G-GAPILKQSKFKVSGSDKFANVIDFLRRQL--HSD---SLFVYVNSAFSPNPDESVIDLYNNFGF- 81 (96)
T ss_dssp CEEEEEEEEC---T-TCCCCSCCEEEEETTSBTHHHHHHHHHHH--TCS---SCEEEEEEEECCCTTSBHHHHHHHHCB-
T ss_pred CeEEEEEEEC---C-CCCcccccEEEeCCCCcHHHHHHHHHHhc--CCc---eEEEEECCcccCChhhHHHHHHHHhCC-
Confidence 3588888775 3 47888888899999999999999999999 776 55467777 445668899999866554
Q ss_pred CCCCeeEEEeec
Q psy7979 171 RTPPLKLQYRPR 182 (186)
Q Consensus 171 ~~~Pm~L~Yr~~ 182 (186)
++-|.+.|.-.
T Consensus 82 -DGfLyi~Ys~~ 92 (96)
T 1wz3_A 82 -DGKLVVNYACS 92 (96)
T ss_dssp -TTBEEEEEESC
T ss_pred -CCEEEEEEeCC
Confidence 78899999754
No 11
>3w1s_C Ubiquitin-like protein ATG12; ubiquitin fold, E3-like, ATG3 binding, isopeptide bond betwe Gly186 and ATG5 Lys149, ligase; 2.60A {Saccharomyces cerevisiae S288C}
Probab=96.69 E-value=0.014 Score=41.60 Aligned_cols=80 Identities=11% Similarity=0.203 Sum_probs=56.4
Q ss_pred CceeEEEEeccCCCCccccccccEEEecccccHHHHHHHHHHHhhcCCCCCceEEEEeCCEecCC-CCcHHHHHHHhccC
Q psy7979 92 EQVNVYLECSVATTSSLKTLKKRFIRLSSQATITHLKKFVALKLLDEKSKYKEIDILCNDELLGK-DHTLKFVYITRWRF 170 (186)
Q Consensus 92 e~vsl~LE~~~~~~~~l~~l~~~ylrcs~~~tV~hLkKfL~~Kl~~~l~~~~~veIlc~~~~L~~-~~TL~~I~~~~W~~ 170 (186)
+-|.|.+-.. .++|.+.++=..+|+..||+.+-+||+++| .+ ..+=+++|+..++. +.||.++|...- .
T Consensus 7 ~Kv~vrfk~~----g~~P~l~k~KflV~~~~t~~~~v~~lRkrL--~l---~alFlyVNn~f~Ps~d~~~~~Ly~~fk-~ 76 (91)
T 3w1s_C 7 QKIQIKFQPI----GSIGQLKPSVCKISMSQSFAMVILFLKRRL--KM---DHVYCYINNSFAPSPQQNIGELWMQFK-T 76 (91)
T ss_dssp CEEEEEEEEC----CC-------EEEEETTSBHHHHHHHHHHHH--TC---SCCEEEETTTBCCCTTSBHHHHHHHHC-B
T ss_pred CeEEEEEEec----CCCCcccccEEEcCCCCCHHHHHHHHHHhh--CC---ceEEEEECCccCCCcccHHHHHHHHhC-C
Confidence 4577777553 357888888888999999999999999999 76 35667888865454 889999986554 3
Q ss_pred CCCCeeEEEeec
Q psy7979 171 RTPPLKLQYRPR 182 (186)
Q Consensus 171 ~~~Pm~L~Yr~~ 182 (186)
++-|.+.|.-.
T Consensus 77 -dg~Lyv~Ys~~ 87 (91)
T 3w1s_C 77 -NDELIVSYCAS 87 (91)
T ss_dssp -TTEEEEEEEC-
T ss_pred -CCEEEEEEeCc
Confidence 78999999754
No 12
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=96.29 E-value=0.0017 Score=50.08 Aligned_cols=49 Identities=24% Similarity=0.493 Sum_probs=26.8
Q ss_pred CCCCCcccccccccCCccccccchhHHhhhHhhcccchhhHHHHHHHHHHHh
Q psy7979 11 KNTCPSCNIIIHQSHPLQYISFDRTMQDLVYKLVPNLQANEMKREREFYRIR 62 (186)
Q Consensus 11 ~~~CP~C~~~ih~s~Pl~~i~~D~tLQdIVyKLVPgL~~~E~~rr~eFy~~~ 62 (186)
+..||.|...+.. . ..+++|.+|++||.+++|+..+.|..+++.|++..
T Consensus 90 ~~~CP~Cr~~~~~-~--~~l~~~~~l~~~i~~~~~~~~~~~~~~e~~~~~~~ 138 (165)
T 2ckl_B 90 NKECPTCRKKLVS-K--RSLRPDPNFDALISKIYPSRDEYEAHQERVLARIN 138 (165)
T ss_dssp CCBCTTTCCBCCS-G--GGEEECHHHHHHHHHHC------------------
T ss_pred cCCCCCCCCcCCC-c--ccCCcCHHHHHHHHHHHcchhHHHHHHHHHHHHHH
Confidence 5789999999953 2 35899999999999999999888887777777643
No 13
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=95.47 E-value=0.02 Score=38.59 Aligned_cols=61 Identities=15% Similarity=0.084 Sum_probs=46.6
Q ss_pred cEEEecccccHHHHHHHHHHHhhcCCCCCceEEEEeCCEecCCCCcHHHHHHHhccCCCCCeeEEEee
Q psy7979 114 RFIRLSSQATITHLKKFVALKLLDEKSKYKEIDILCNDELLGKDHTLKFVYITRWRFRTPPLKLQYRP 181 (186)
Q Consensus 114 ~ylrcs~~~tV~hLkKfL~~Kl~~~l~~~~~veIlc~~~~L~~~~TL~~I~~~~W~~~~~Pm~L~Yr~ 181 (186)
--+.++...||..||..|+.+. ++|.. +.-++|+|.+|.++.||.+.- ... ..-+.|..|.
T Consensus 16 ~~~~v~~~~tV~~lK~~i~~~~--~ip~~-~qrL~~~g~~L~d~~tL~~~~---i~~-~~~i~l~~rl 76 (85)
T 3n3k_B 16 IILEVEPSDTIENVKAKIQDKE--GIPPD-QQRLIFAGKQLEDGRTLSDYN---IHN-HSALYLLLKL 76 (85)
T ss_dssp EEEECCTTCBHHHHHHHHHHHH--CCCGG-GEEEEETBEECCTTCBTTTTT---CCT-TCEEEEEECC
T ss_pred EEEEECCCCcHHHHHHHHHHHH--CCCHH-HEEEEECCeECCCCCCHHHCC---CCC-CCEEEEEEec
Confidence 3578899999999999999999 88855 556889999999999998742 222 3455555543
No 14
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=95.38 E-value=0.027 Score=36.90 Aligned_cols=46 Identities=15% Similarity=0.109 Sum_probs=40.0
Q ss_pred EEEecccccHHHHHHHHHHHhhcCCCCCceEEEEeCCEecCCCCcHHHH
Q psy7979 115 FIRLSSQATITHLKKFVALKLLDEKSKYKEIDILCNDELLGKDHTLKFV 163 (186)
Q Consensus 115 ylrcs~~~tV~hLkKfL~~Kl~~~l~~~~~veIlc~~~~L~~~~TL~~I 163 (186)
-+.++...||..||+.|+.+. +++.. +.-++++|..|.++.||.+.
T Consensus 14 ~i~v~~~~tv~~lK~~i~~~~--~i~~~-~q~L~~~g~~L~d~~tL~~~ 59 (76)
T 3a9j_A 14 TLEVEPSDTIENVKAKIQDKE--GIPPD-QQRLIFAGKQLEDGRTLSDY 59 (76)
T ss_dssp EEECCTTCBHHHHHHHHHHHH--CCCGG-GEEEEETTEECCTTCBTGGG
T ss_pred EEEECCCCcHHHHHHHHHHHH--CcCHH-HeEEEECCeECCCCCcHHHc
Confidence 578899999999999999999 88854 66788999999999999764
No 15
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=95.31 E-value=0.03 Score=37.47 Aligned_cols=46 Identities=15% Similarity=0.003 Sum_probs=40.1
Q ss_pred EEEecccccHHHHHHHHHHHhhcCCCCCceEEEEeCCEecCCCCcHHHH
Q psy7979 115 FIRLSSQATITHLKKFVALKLLDEKSKYKEIDILCNDELLGKDHTLKFV 163 (186)
Q Consensus 115 ylrcs~~~tV~hLkKfL~~Kl~~~l~~~~~veIlc~~~~L~~~~TL~~I 163 (186)
.+.++...||..||.-|+.+. ++|.. +.-++++|..|.++.||.+.
T Consensus 18 ~~~v~~~~tV~~lK~~i~~~~--gip~~-~qrL~~~G~~L~d~~tL~~~ 63 (79)
T 3phx_B 18 TYEVRLTQTVAHLKQQVSGLE--GVQDD-LFWLTFEGKPLEDQLPLGEY 63 (79)
T ss_dssp EEEECTTSBHHHHHHHHHHHH--TCCGG-GEEEEETTEECCTTSBGGGG
T ss_pred EEEECCcChHHHHHHHHHhhc--CCCHH-HEEEEECCEECCCCCcHHHC
Confidence 478899999999999999999 88855 45688999999999999874
No 16
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=95.25 E-value=0.033 Score=36.46 Aligned_cols=59 Identities=14% Similarity=0.075 Sum_probs=45.3
Q ss_pred EEEecccccHHHHHHHHHHHhhcCCCCCceEEEEeCCEecCCCCcHHHHHHHhccCCCCCeeEEEe
Q psy7979 115 FIRLSSQATITHLKKFVALKLLDEKSKYKEIDILCNDELLGKDHTLKFVYITRWRFRTPPLKLQYR 180 (186)
Q Consensus 115 ylrcs~~~tV~hLkKfL~~Kl~~~l~~~~~veIlc~~~~L~~~~TL~~I~~~~W~~~~~Pm~L~Yr 180 (186)
-+.++...||..||.-|+.+. +++.. +.-++++|.+|.++.||.+.-+ .. ...+.|..|
T Consensus 14 ~~~v~~~~tv~~lK~~i~~~~--~i~~~-~q~L~~~g~~L~d~~tL~~~~i---~~-g~~i~l~~~ 72 (76)
T 1ndd_A 14 EIDIEPTDKVERIKERVEEKE--GIPPQ-QQRLIYSGKQMNDEKTAADYKI---LG-GSVLHLVLA 72 (76)
T ss_dssp EEECCTTCBHHHHHHHHHHHH--CCCGG-GEEEEETTEECCTTSBGGGGTC---CT-TCEEEEEEC
T ss_pred EEEECCCChHHHHHHHHHHHH--CcChH-HEEEEECCEECCCCCcHHHcCC---CC-CCEEEEEEe
Confidence 478889999999999999999 88854 6668899999999999976421 21 345555554
No 17
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=95.16 E-value=0.089 Score=36.00 Aligned_cols=47 Identities=13% Similarity=0.210 Sum_probs=40.7
Q ss_pred EEEecccccHHHHHHHHHHHhhcCCCCCceEEEEeCCEecCCCCcHHHHH
Q psy7979 115 FIRLSSQATITHLKKFVALKLLDEKSKYKEIDILCNDELLGKDHTLKFVY 164 (186)
Q Consensus 115 ylrcs~~~tV~hLkKfL~~Kl~~~l~~~~~veIlc~~~~L~~~~TL~~I~ 164 (186)
.+.++...||..||+.|..+. +++.. +.-++++|..|.++.||.+.-
T Consensus 19 ~~~v~~~~tV~~lK~~i~~~~--gip~~-~qrLi~~Gk~L~d~~tL~~~~ 65 (90)
T 4dwf_A 19 TFIVGAQMNVKEFKEHIAASV--SIPSE-KQRLIYQGRVLQDDKKLQEYN 65 (90)
T ss_dssp EEEEETTCBHHHHHHHHHHHH--TCCGG-GEEEEETTEECCTTSBGGGGT
T ss_pred EEEECCCCCHHHHHHHHHHHh--CCCHH-HEEEEECCeECCCCCCHHHcC
Confidence 578899999999999999999 88765 446888999999999998754
No 18
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=95.15 E-value=0.029 Score=37.71 Aligned_cols=47 Identities=15% Similarity=0.089 Sum_probs=40.4
Q ss_pred cEEEecccccHHHHHHHHHHHhhcCCCCCceEEEEeCCEecCCCCcHHHH
Q psy7979 114 RFIRLSSQATITHLKKFVALKLLDEKSKYKEIDILCNDELLGKDHTLKFV 163 (186)
Q Consensus 114 ~ylrcs~~~tV~hLkKfL~~Kl~~~l~~~~~veIlc~~~~L~~~~TL~~I 163 (186)
-.+.++...||..||.-|+.+. ++|.. +.-++|+|.+|.++.||.+.
T Consensus 16 ~~~~v~~~~tV~~lK~~i~~~~--~i~~~-~qrL~~~g~~L~d~~tL~~~ 62 (85)
T 3mtn_B 16 ITLEVEPSDTIENVKAKIQDKE--GIPPD-QQRLIFAGKQLEDGRTLSDY 62 (85)
T ss_dssp EEEEECTTCBHHHHHHHHHHHH--CCCGG-GCEEEETTEECCTTSBTGGG
T ss_pred EEEEECCCCCHHHHHHHHHHHH--CcChH-HEEEEECCEECCCCCCHHHc
Confidence 3578899999999999999999 88855 45688999999999999874
No 19
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=95.14 E-value=0.036 Score=36.56 Aligned_cols=46 Identities=11% Similarity=0.189 Sum_probs=39.9
Q ss_pred EEEecccccHHHHHHHHHHHhhcCCCCCceEEEEeCCEecCCCCcHHHH
Q psy7979 115 FIRLSSQATITHLKKFVALKLLDEKSKYKEIDILCNDELLGKDHTLKFV 163 (186)
Q Consensus 115 ylrcs~~~tV~hLkKfL~~Kl~~~l~~~~~veIlc~~~~L~~~~TL~~I 163 (186)
-+.++...||..||.-|+.+. +++.. +.-++++|..|.++.||.+.
T Consensus 17 ~~~v~~~~tV~~LK~~i~~~~--~i~~~-~qrL~~~gk~L~d~~tL~~~ 62 (77)
T 2bwf_A 17 EVNVAPESTVLQFKEAINKAN--GIPVA-NQRLIYSGKILKDDQTVESY 62 (77)
T ss_dssp EEEECTTCBHHHHHHHHHHHH--CCCGG-GEEEEETTEECCTTSBTGGG
T ss_pred EEEECCCCcHHHHHHHHHHHh--CCCHH-HEEEEECCeEcCCCCCHHHc
Confidence 578899999999999999999 88854 66688999999999999764
No 20
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=95.11 E-value=0.062 Score=36.44 Aligned_cols=47 Identities=13% Similarity=0.027 Sum_probs=40.6
Q ss_pred EEEecccccHHHHHHHHHHHhhcCCCCCceEEEEeCCEecCCCCcHHHHH
Q psy7979 115 FIRLSSQATITHLKKFVALKLLDEKSKYKEIDILCNDELLGKDHTLKFVY 164 (186)
Q Consensus 115 ylrcs~~~tV~hLkKfL~~Kl~~~l~~~~~veIlc~~~~L~~~~TL~~I~ 164 (186)
.+.++...||..||+-|+.+. +++.. +.-++++|..|.++.||.+.-
T Consensus 21 ~~~v~~~~tV~~lK~~i~~~~--gi~~~-~qrL~~~Gk~L~d~~tL~~~~ 67 (87)
T 1wh3_A 21 AYAINPNSFILGLKQQIEDQQ--GLPKK-QQQLEFQGQVLQDWLGLGIYG 67 (87)
T ss_dssp EEEECSSSBHHHHHHHHHHHT--CCCTT-TEEEEETTEECCSSSBHHHHT
T ss_pred EEEeCCCChHHHHHHHHHHHh--CCChH-HEEEEECCEEccCCCCHHHCC
Confidence 578899999999999999999 88855 555888999999999998753
No 21
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.09 E-value=0.041 Score=36.68 Aligned_cols=46 Identities=17% Similarity=0.247 Sum_probs=39.7
Q ss_pred EEEecccccHHHHHHHHHHHhhcCCCCCceEEEEeCCEecCCCCcHHHH
Q psy7979 115 FIRLSSQATITHLKKFVALKLLDEKSKYKEIDILCNDELLGKDHTLKFV 163 (186)
Q Consensus 115 ylrcs~~~tV~hLkKfL~~Kl~~~l~~~~~veIlc~~~~L~~~~TL~~I 163 (186)
-+.++...||..||+-|+.+. +++.. +.-++++|..|.++.||.+.
T Consensus 21 ~~~v~~~~tV~~LK~~i~~~~--~i~~~-~qrL~~~gk~L~d~~tL~~~ 66 (81)
T 2dzi_A 21 SLQVPEDELVSTLKQLVSEKL--NVPVR-QQRLLFKGKALADGKRLSDY 66 (81)
T ss_dssp EEEECSSCBHHHHHHHHHHHT--CCCTT-TCEEEETTEECCTTSBGGGG
T ss_pred EEEECCCCcHHHHHHHHHHHH--CcCHH-HEEEEECCeECCCCCcHHHc
Confidence 478899999999999999999 88855 55578899999999999764
No 22
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=94.92 E-value=0.042 Score=37.57 Aligned_cols=46 Identities=15% Similarity=0.265 Sum_probs=40.1
Q ss_pred EEEecccccHHHHHHHHHHHhhcCCCCCceEEEEeCCEecCCCCcHHHH
Q psy7979 115 FIRLSSQATITHLKKFVALKLLDEKSKYKEIDILCNDELLGKDHTLKFV 163 (186)
Q Consensus 115 ylrcs~~~tV~hLkKfL~~Kl~~~l~~~~~veIlc~~~~L~~~~TL~~I 163 (186)
.+.++...||..||..|+.+. ++|...+ -++++|..|.++.||.+.
T Consensus 31 ~~~v~~~~tV~~lK~~i~~~~--gip~~~q-rLi~~Gk~L~D~~tL~~~ 76 (88)
T 4eew_A 31 TFIVGAQMNVKEFKEHIAASV--SIPSEKQ-RLIYQGRVLQDDKKLQEY 76 (88)
T ss_dssp EEEEETTCBHHHHHHHHHHHH--TCCGGGE-EEEETTEECCTTSBGGGG
T ss_pred EEEECCCCCHHHHHHHHHHHh--CCCHHHE-EEEECCEECCCCCcHHHc
Confidence 578899999999999999999 8886544 688899999999999864
No 23
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=94.88 E-value=0.035 Score=37.68 Aligned_cols=46 Identities=11% Similarity=0.106 Sum_probs=40.1
Q ss_pred EEEecccccHHHHHHHHHHHhhcCCCCCceEEEEeCCEecCCCCcHHHH
Q psy7979 115 FIRLSSQATITHLKKFVALKLLDEKSKYKEIDILCNDELLGKDHTLKFV 163 (186)
Q Consensus 115 ylrcs~~~tV~hLkKfL~~Kl~~~l~~~~~veIlc~~~~L~~~~TL~~I 163 (186)
.+.++...||..||.-|+.+. ++|.. +.-++|+|..|.++.||.+.
T Consensus 26 ~~~v~~~~tV~~lK~~i~~~~--gip~~-~qrL~~~G~~L~d~~tL~~~ 71 (88)
T 3dbh_I 26 EIDIEPTDKVERIKERVEEKE--GIPPQ-QQRLIYSGKQMNDEKTAADY 71 (88)
T ss_dssp EEEECTTCBHHHHHHHHHHHH--CCCGG-GCCEEETTEECCTTSBGGGG
T ss_pred EEEECCCCCHHHHHHHHHHHH--CcCHH-HEEEEECCeECCCCCcHHHc
Confidence 578899999999999999999 88854 44688899999999999874
No 24
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=94.83 E-value=0.2 Score=35.11 Aligned_cols=65 Identities=12% Similarity=0.167 Sum_probs=49.8
Q ss_pred CCCCCceeEEEEeccCCCCccccccccEEEecccccHHHHHHHHHHHhhcCCCCCceEEEEeCCEecCCC-CcHHHHH
Q psy7979 88 HRLDEQVNVYLECSVATTSSLKTLKKRFIRLSSQATITHLKKFVALKLLDEKSKYKEIDILCNDELLGKD-HTLKFVY 164 (186)
Q Consensus 88 ~~~de~vsl~LE~~~~~~~~l~~l~~~ylrcs~~~tV~hLkKfL~~Kl~~~l~~~~~veIlc~~~~L~~~-~TL~~I~ 164 (186)
|..+..|.|.+... + . .--+.++...||..||..|..+. ++|.. +.-++++|.+|.++ .||.+.-
T Consensus 10 ~~~~~~~~I~Vk~~---~----~--~~~l~v~~~~TV~~LK~~I~~~~--gip~~-~QrLi~~Gk~L~D~~~tL~~yg 75 (94)
T 2kan_A 10 HAAVRKIHVTVKFP---S----K--QFTVEVDRTETVSSLKDKIHIVE--NTPIK-RMQLYYSGIELADDYRNLNEYG 75 (94)
T ss_dssp CSSSCCEEEEEECS---S----C--EEEEEECTTCBHHHHHHHHHHHS--SSCTT-TEEEEETTEEECCTTSBHHHHT
T ss_pred ccCCCCEEEEEEcC---C----c--EEEEEECCCCcHHHHHHHHHHHH--CcCHH-HEEEEECCEECCCCcccHHHCC
Confidence 44566688877543 1 1 23478899999999999999998 88865 45577899999999 9998753
No 25
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=94.80 E-value=0.044 Score=38.00 Aligned_cols=60 Identities=17% Similarity=0.111 Sum_probs=46.4
Q ss_pred EEEecccccHHHHHHHHHHHhhcCCCCCceEEEEeCCEecCCCCcHHHHHHHhccCCCCCeeEEEee
Q psy7979 115 FIRLSSQATITHLKKFVALKLLDEKSKYKEIDILCNDELLGKDHTLKFVYITRWRFRTPPLKLQYRP 181 (186)
Q Consensus 115 ylrcs~~~tV~hLkKfL~~Kl~~~l~~~~~veIlc~~~~L~~~~TL~~I~~~~W~~~~~Pm~L~Yr~ 181 (186)
.+.++...||..||..|+.+. +++.. +.-++++|..|.++.||.+.- ... ..-+.|..|.
T Consensus 15 ~~~v~~~~TV~~LK~~i~~~~--gip~~-~qrL~~~G~~L~d~~tL~~~~---i~~-~~~i~l~~r~ 74 (96)
T 3k9o_B 15 TLEVEPSDTIENVKAKIQDKE--GIPPD-QQRLIFAGKQLEDGRTLSDYN---IQK-ESTLHLVLRL 74 (96)
T ss_dssp EEECCTTCBHHHHHHHHHHHH--CCCGG-GEEEEETTEECCTTSBTGGGT---CCT-TCEEEEEECC
T ss_pred EEEECCCCCHHHHHHHHHhhh--CCChh-HEEEEECCEECCCCCcHHHcC---CCC-CCEEEEEEEc
Confidence 478899999999999999999 88755 556889999999999998743 222 3456665554
No 26
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=94.69 E-value=0.047 Score=37.75 Aligned_cols=46 Identities=15% Similarity=0.109 Sum_probs=40.1
Q ss_pred EEEecccccHHHHHHHHHHHhhcCCCCCceEEEEeCCEecCCCCcHHHH
Q psy7979 115 FIRLSSQATITHLKKFVALKLLDEKSKYKEIDILCNDELLGKDHTLKFV 163 (186)
Q Consensus 115 ylrcs~~~tV~hLkKfL~~Kl~~~l~~~~~veIlc~~~~L~~~~TL~~I 163 (186)
.+.++...||..||..|..+. +++.. +.-++++|..|.++.||.+.
T Consensus 31 ~l~v~~~~TV~~LK~~I~~~~--gip~~-~qrL~~~Gk~L~D~~tL~~~ 76 (91)
T 3v6c_B 31 TLEVEPSDTIENVKAKIQDKE--GIPPD-QQRLIFAGKQLEDGRTLSDY 76 (91)
T ss_dssp EEEECTTCBHHHHHHHHHHHH--CCCGG-GCEEEETTEECCTTCBTGGG
T ss_pred EEEECCCCCHHHHHHHHHhhh--CCChh-hEEEEECCeECCCcCcHHHC
Confidence 578999999999999999999 88865 44588899999999999874
No 27
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=94.66 E-value=0.083 Score=36.31 Aligned_cols=47 Identities=11% Similarity=0.109 Sum_probs=40.4
Q ss_pred EEEecccccHHHHHHHHHHHhhcCCCCCceEEEEeCCEe-cCCCCcHHHHH
Q psy7979 115 FIRLSSQATITHLKKFVALKLLDEKSKYKEIDILCNDEL-LGKDHTLKFVY 164 (186)
Q Consensus 115 ylrcs~~~tV~hLkKfL~~Kl~~~l~~~~~veIlc~~~~-L~~~~TL~~I~ 164 (186)
-+.++...||..||.-|..+. ++|.. +.-++++|.. |.++.||.+.-
T Consensus 24 ~l~v~~~~TV~~LK~~I~~~~--gip~~-~QrLi~~Gk~lL~D~~tL~~y~ 71 (84)
T 2kk8_A 24 ELEVDYRDTLLVVKQKIERSQ--HIPVS-KQTLIVDGIVILREDLTVEQCQ 71 (84)
T ss_dssp EEEECTTSBHHHHHHHHHHHH--TCCGG-GEEEEETTEECCCSSSBHHHHT
T ss_pred EEEECCCChHHHHHHHHHHHH--CcChH-HEEEEECCEEecCCcCCHHHcC
Confidence 478899999999999999999 88855 5557889999 99999998753
No 28
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=94.62 E-value=0.089 Score=35.05 Aligned_cols=48 Identities=13% Similarity=0.153 Sum_probs=41.7
Q ss_pred cEEEecccccHHHHHHHHHHHhhcCCCCCceEEEEeCCEecCCCCcHHHHH
Q psy7979 114 RFIRLSSQATITHLKKFVALKLLDEKSKYKEIDILCNDELLGKDHTLKFVY 164 (186)
Q Consensus 114 ~ylrcs~~~tV~hLkKfL~~Kl~~~l~~~~~veIlc~~~~L~~~~TL~~I~ 164 (186)
-.+.++...||..||+.++.+. +++.. +.-++++|..|.++.||.+.-
T Consensus 16 ~~~~v~~~~tv~~lk~~i~~~~--gi~~~-~qrL~~~G~~L~d~~tl~~~~ 63 (79)
T 2uyz_B 16 IHFKVKMTTHLKKLKESYCQRQ--GVPMN-SLRFLFEGQRIADNHTPKELG 63 (79)
T ss_dssp EEEEEETTSCTHHHHHHHHHHH--TCCGG-GEEEEETTEECCTTCCHHHHT
T ss_pred EEEEECCCChHHHHHHHHHHHH--CCCcc-cEEEEECCEEeCCCCCHHHcC
Confidence 3578899999999999999999 88855 666889999999999998753
No 29
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=94.60 E-value=0.043 Score=37.90 Aligned_cols=60 Identities=12% Similarity=0.029 Sum_probs=45.8
Q ss_pred EEEecccccHHHHHHHHHHHhhcCCCCCceEEEEeCCEecCCCCcHHHHHHHhccCCCCCeeEEEee
Q psy7979 115 FIRLSSQATITHLKKFVALKLLDEKSKYKEIDILCNDELLGKDHTLKFVYITRWRFRTPPLKLQYRP 181 (186)
Q Consensus 115 ylrcs~~~tV~hLkKfL~~Kl~~~l~~~~~veIlc~~~~L~~~~TL~~I~~~~W~~~~~Pm~L~Yr~ 181 (186)
.+.++...||..||.-|+.+. ++|.. +.-++++|..|.++.||.+.- ... ..-+.|..|.
T Consensus 14 ~l~v~~~~TV~~LK~~I~~~~--gip~~-~qrLi~~Gk~L~D~~tL~~~~---i~~-g~~l~l~~rl 73 (88)
T 4fbj_B 14 EIDIEPTDKVERIKERVEEKE--GIPPQ-QQRLIYSGKQMNDEKTAADYK---ILG-GSVLHLVLAL 73 (88)
T ss_dssp EEECCTTCBHHHHHHHHHHHH--CCCGG-GCEEEETTEECCTTSBTTTTT---CCT-TCEEEEECBC
T ss_pred EEEECCCCCHHHHHHHHHHHH--CcChh-HEEEEECCeECCCCCcHHHcC---CCC-CCEEEEEEEC
Confidence 578899999999999999999 88865 446888999999999998742 222 3455555443
No 30
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=94.40 E-value=0.12 Score=36.87 Aligned_cols=61 Identities=13% Similarity=0.223 Sum_probs=47.3
Q ss_pred CceeEEEEeccCCCCccccccccEEEecccccHHHHHHHHHHHhhcCCCCCceEEEEeCCEecCCCCcHHHHH
Q psy7979 92 EQVNVYLECSVATTSSLKTLKKRFIRLSSQATITHLKKFVALKLLDEKSKYKEIDILCNDELLGKDHTLKFVY 164 (186)
Q Consensus 92 e~vsl~LE~~~~~~~~l~~l~~~ylrcs~~~tV~hLkKfL~~Kl~~~l~~~~~veIlc~~~~L~~~~TL~~I~ 164 (186)
..|.|.+... .. +-.+.++...||..||+.|..+. +++.. +.-++++|..|.++.||.+.-
T Consensus 16 ~~m~I~Vk~~---~g------~~~l~v~~~~TV~~LK~~I~~~~--gip~~-~qrLi~~Gk~L~D~~tL~~~g 76 (106)
T 1wx7_A 16 HLIKVTVKTP---KD------KEDFSVTDTCTIQQLKEEISQRF--KAHPD-QLVLIFAGKILKDPDSLAQCG 76 (106)
T ss_dssp SEEEEEEECS---SC------EEEEEEETTCCHHHHHHHHHHHH--TCCTT-TEEEEETTEECCTTSCHHHHT
T ss_pred ceEEEEEEeC---CC------cEEEEECCCCcHHHHHHHHHHHH--CcChh-hEEEEECCEECCCcCcHHHcC
Confidence 4577777543 11 12578899999999999999999 88854 566888999999999998763
No 31
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=94.38 E-value=0.052 Score=38.22 Aligned_cols=62 Identities=16% Similarity=0.165 Sum_probs=46.4
Q ss_pred CCceeEEEEeccCCCCccccccccEEEecccccHHHHHHHHHHHhhcCCCCCceEEEEeCCEecCCCCcHHHH
Q psy7979 91 DEQVNVYLECSVATTSSLKTLKKRFIRLSSQATITHLKKFVALKLLDEKSKYKEIDILCNDELLGKDHTLKFV 163 (186)
Q Consensus 91 de~vsl~LE~~~~~~~~l~~l~~~ylrcs~~~tV~hLkKfL~~Kl~~~l~~~~~veIlc~~~~L~~~~TL~~I 163 (186)
+..|.|.+... ++ ..-.+.++...||..||+.|+.+. +++... .-++|+|..|.++.||.+.
T Consensus 20 ~~~m~I~Vk~~--~g------~~~~l~v~~~~TV~~LK~~I~~~~--gip~~~-qrLi~~Gk~L~D~~tL~~~ 81 (98)
T 4hcn_B 20 GRPMQIFVKTL--TG------KTITLEVESSDTIDNVKSKIQDKE--GIPPDQ-QRLIFAGKQLEDGRTLSDY 81 (98)
T ss_dssp --CCEEEEEET--TC------CEEEEECCTTCBHHHHHHHHHHHH--CCCGGG-CEEEETTEECCTTCBSGGG
T ss_pred CCeEEEEEEeC--CC------CEEEEEECCCCcHHHHHHHHHHHh--CCChhH-EEEEECCEECCCCCcHHHC
Confidence 34467766543 11 223578899999999999999999 888654 4688999999999999874
No 32
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=94.31 E-value=0.12 Score=35.20 Aligned_cols=60 Identities=22% Similarity=0.154 Sum_probs=46.2
Q ss_pred EE-EecccccHHHHHHHHHHHhhcCCCCCceEEEEeCCEecCCCCcHHHHHHHhccCCCCCeeEEEee
Q psy7979 115 FI-RLSSQATITHLKKFVALKLLDEKSKYKEIDILCNDELLGKDHTLKFVYITRWRFRTPPLKLQYRP 181 (186)
Q Consensus 115 yl-rcs~~~tV~hLkKfL~~Kl~~~l~~~~~veIlc~~~~L~~~~TL~~I~~~~W~~~~~Pm~L~Yr~ 181 (186)
-+ .++...||..||.-|+.+. +++.. +.-++++|.+|.++.||.+.-+. ...-+.|..|.
T Consensus 22 ~l~~v~~~~tV~~lK~~i~~~~--gip~~-~qrL~~~gk~L~d~~tL~~~~i~----~g~~i~l~~~~ 82 (89)
T 1wy8_A 22 TIEDVSRKATIEELRERVWALF--DVRPE-CQRLFYRGKQLENGYTLFDYDVG----LNDIIQLLVRP 82 (89)
T ss_dssp EEEEECTTCBHHHHHHHHHHHS--CCCTT-TEEEEETTEECCSSSBHHHHTCC----TTCEEEEEECC
T ss_pred EEEecCCCCCHHHHHHHHHHHH--CcChh-hEEEEECCeECCCCCCHHHCCCC----CCCEEEEEEeC
Confidence 46 5899999999999999998 88855 55578899999999999876321 13456666554
No 33
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=94.27 E-value=0.094 Score=39.02 Aligned_cols=63 Identities=24% Similarity=0.286 Sum_probs=49.7
Q ss_pred cEEEecccccHHHHHHHHHHHhhcCCCCCceEEEEeCCEecCCCCcHHHHHHH----hccCCCCCeeEEEe
Q psy7979 114 RFIRLSSQATITHLKKFVALKLLDEKSKYKEIDILCNDELLGKDHTLKFVYIT----RWRFRTPPLKLQYR 180 (186)
Q Consensus 114 ~ylrcs~~~tV~hLkKfL~~Kl~~~l~~~~~veIlc~~~~L~~~~TL~~I~~~----~W~~~~~Pm~L~Yr 180 (186)
-+|-+....||..||.-|..+. ++|...+. ++++|.+|.++.||.+--+. +|.. ...+.|.+|
T Consensus 14 i~lev~~sdTV~~lK~kI~~~e--gIP~~qQr-Li~~Gk~LeD~~TLsdy~I~~~~a~~q~-~stL~L~lr 80 (118)
T 2fnj_B 14 IFTDAKESSTVFELKRIVEGIL--KRPPEEQR-LYKDDQLLDDGKTLGECGFTSQTARPQA-PATVGLAFR 80 (118)
T ss_dssp EEEEEETTSBHHHHHHHHHHHH--CCCGGGEE-EEETTEECCTTSBHHHHTCCTTTSBTTB-CEEEEEEEB
T ss_pred EEEEeCCcChHHHHHHHHHHHh--CCCHHHeE-EEECCeECCCCCCHHHcCcccccccCCC-CCEEEEEec
Confidence 4789999999999999999999 89977555 55899999999999985433 3432 345677666
No 34
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=94.24 E-value=0.1 Score=36.41 Aligned_cols=47 Identities=19% Similarity=0.127 Sum_probs=40.5
Q ss_pred EEEecccccHHHHHHHHHHHhhcCCCCCceEEEEeCCEecCCCCcHHHHH
Q psy7979 115 FIRLSSQATITHLKKFVALKLLDEKSKYKEIDILCNDELLGKDHTLKFVY 164 (186)
Q Consensus 115 ylrcs~~~tV~hLkKfL~~Kl~~~l~~~~~veIlc~~~~L~~~~TL~~I~ 164 (186)
-+.++...||..||+-|+.+. +++.. +.-++++|.+|.++.||.+.-
T Consensus 31 ~l~v~~~~TV~~LK~~I~~~~--gip~~-~qrLi~~Gk~L~D~~tL~~y~ 77 (93)
T 2l7r_A 31 TFEVTGQETVAQIKAHVASLE--GIAPE-DQVVLLAGAPLEDEATLGQCG 77 (93)
T ss_dssp EEECCSSCBHHHHHHHHHHHH--TCCGG-GCEEEETTEECCTTSBHHHHT
T ss_pred EEEeCCCCcHHHHHHHHHHHh--CcChh-HEEEEECCEECCCCCcHHHCC
Confidence 478899999999999999999 88855 555788999999999998763
No 35
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=94.21 E-value=0.083 Score=36.74 Aligned_cols=60 Identities=12% Similarity=0.158 Sum_probs=46.6
Q ss_pred CceeEEEEeccCCCCccccccccEEEecccccHHHHHHHHHHHhhcCCCCCceEEEEeCCEecCCCCcHHHH
Q psy7979 92 EQVNVYLECSVATTSSLKTLKKRFIRLSSQATITHLKKFVALKLLDEKSKYKEIDILCNDELLGKDHTLKFV 163 (186)
Q Consensus 92 e~vsl~LE~~~~~~~~l~~l~~~ylrcs~~~tV~hLkKfL~~Kl~~~l~~~~~veIlc~~~~L~~~~TL~~I 163 (186)
..|.|.+... + ..-.+.++...||..||+.|+.+. +++.. +.-++++|..|.++.||.+.
T Consensus 16 ~~m~i~Vk~~---g------~~~~~~v~~~~TV~~LK~~I~~~~--gip~~-~qrL~~~Gk~L~D~~tL~~~ 75 (96)
T 1wx8_A 16 RIIRVSVKTP---Q------DCHEFFLAENSNVRRFKKQISKYL--HCNAD-RLVLIFTGKILRDQDILSQR 75 (96)
T ss_dssp CEEEEEEECS---S------SEEEEEEETTCCHHHHHHHHHHHT--CSCTT-TBCCEETTEECCTTSCHHHH
T ss_pred CcEEEEEEEC---C------eEEEEEECCCCCHHHHHHHHHHHh--CCCHH-HEEEEECCEECCCcCCHHHC
Confidence 4577777532 1 122578899999999999999999 88865 44578899999999999875
No 36
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=94.18 E-value=0.033 Score=40.70 Aligned_cols=37 Identities=16% Similarity=0.418 Sum_probs=30.1
Q ss_pred CCCCCCcccccccccCCccccccchhHHhhhHhhcccchh
Q psy7979 10 IKNTCPSCNIIIHQSHPLQYISFDRTMQDLVYKLVPNLQA 49 (186)
Q Consensus 10 ~~~~CP~C~~~ih~s~Pl~~i~~D~tLQdIVyKLVPgL~~ 49 (186)
.+..||.|...+.. .+ .++++.+|+++|.+++|+...
T Consensus 86 ~~~~CP~Cr~~~~~-~~--~~~~n~~l~~~i~~~~p~~~~ 122 (124)
T 3fl2_A 86 QVFSCPACRYDLGR-SY--AMQVNQPLQTVLNQLFPGYGN 122 (124)
T ss_dssp TCCBCTTTCCBCCT-TC--CCCCCHHHHHHHHHHSTTTTT
T ss_pred CcCCCCCCCccCCC-CC--CCCCCHHHHHHHHHHcccccc
Confidence 34589999999953 22 578999999999999999753
No 37
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=94.12 E-value=0.087 Score=36.22 Aligned_cols=60 Identities=13% Similarity=0.011 Sum_probs=45.9
Q ss_pred EEEecccccHHHHHHHHHHHhhcCCCCCceEEEEeCCEecCCCCcHHHHHHHhccCCCCCeeEEEee
Q psy7979 115 FIRLSSQATITHLKKFVALKLLDEKSKYKEIDILCNDELLGKDHTLKFVYITRWRFRTPPLKLQYRP 181 (186)
Q Consensus 115 ylrcs~~~tV~hLkKfL~~Kl~~~l~~~~~veIlc~~~~L~~~~TL~~I~~~~W~~~~~Pm~L~Yr~ 181 (186)
.+.++...||..||.-|+.+. ++|.. +.-++++|.+|.++.||.+.-+. ....+.|..+.
T Consensus 18 ~~~v~~~~TV~~LK~~I~~~~--gip~~-~qrL~~~Gk~L~D~~tL~~~~I~----~g~~i~l~~~~ 77 (88)
T 2hj8_A 18 TYEVRLTQTVAHLKQQVSGLE--GVQDD-LFWLTFEGKPLEDQLPLGEYGLK----PLSTVFMNLRL 77 (88)
T ss_dssp EEEEESSSBHHHHHHHHHHHT--CSCTT-TEEEESSSSCCCTTSBHHHHHCS----TTCEEEEEEC-
T ss_pred EEEECCCCcHHHHHHHHHHHh--CCChh-HEEEEECCEECCCCCcHHHcCCC----CCCEEEEEEEc
Confidence 578899999999999999998 88866 44577889999999999876432 13455555543
No 38
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=94.10 E-value=0.065 Score=36.95 Aligned_cols=47 Identities=17% Similarity=0.109 Sum_probs=40.2
Q ss_pred cEEEecccccHHHHHHHHHHHhhcCCCCCceEEEEeCCEecCCCCcHHHH
Q psy7979 114 RFIRLSSQATITHLKKFVALKLLDEKSKYKEIDILCNDELLGKDHTLKFV 163 (186)
Q Consensus 114 ~ylrcs~~~tV~hLkKfL~~Kl~~~l~~~~~veIlc~~~~L~~~~TL~~I 163 (186)
-.+.++...||..||.-|+.+. ++|.. +.-++++|.+|.++.||.+.
T Consensus 22 ~~l~v~~~~TV~~LK~~I~~~~--gip~~-~qrL~~~Gk~L~D~~tL~~~ 68 (88)
T 1sif_A 22 FTVEMEPSDTIENLKAKIQDKE--GIPPD-QQRLIFAGKQLEDGRTLSDY 68 (88)
T ss_dssp EEEECCTTSBHHHHHHHHHHHH--CCCGG-GCEEEETTEECCTTSBSGGG
T ss_pred EEEEECCCChHHHHHHHHHHHH--CcChh-hEEEEECCEECCCCCcHHHc
Confidence 3578899999999999999999 88855 55688899999999999764
No 39
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=94.09 E-value=0.12 Score=36.65 Aligned_cols=62 Identities=13% Similarity=0.215 Sum_probs=47.9
Q ss_pred CCceeEEEEeccCCCCccccccccEEEecccccHHHHHHHHHHHhhcCCCCCceEEEEeCCEecCCCCcHHHHH
Q psy7979 91 DEQVNVYLECSVATTSSLKTLKKRFIRLSSQATITHLKKFVALKLLDEKSKYKEIDILCNDELLGKDHTLKFVY 164 (186)
Q Consensus 91 de~vsl~LE~~~~~~~~l~~l~~~ylrcs~~~tV~hLkKfL~~Kl~~~l~~~~~veIlc~~~~L~~~~TL~~I~ 164 (186)
+..|.|.+... +. +-.+.++...||..||+-|+.+. +++.. +.-++++|..|.++.||.+.-
T Consensus 20 ~~~m~I~Vk~~---~g------~~~l~v~~~~TV~~LK~~I~~~~--gip~~-~QrLi~~Gk~L~D~~tL~~yg 81 (100)
T 1yqb_A 20 PHLIKVTVKTP---KD------KEDFSVTDTCTIQQLKEEISQRF--KAHPD-QLVLIFAGKILKDPDSLAQCG 81 (100)
T ss_dssp TTEEEEEEECS---SC------EEEEEEETTCBHHHHHHHHHHHH--TCCGG-GEEEEETTEECCTTSBHHHHT
T ss_pred CCeEEEEEEcC---CC------cEEEEECCCCcHHHHHHHHHHHH--CcChh-hEEEEECCEECCCcCcHHHCC
Confidence 34577777543 11 12578899999999999999999 88854 566888999999999998753
No 40
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=94.09 E-value=0.086 Score=36.23 Aligned_cols=46 Identities=17% Similarity=0.149 Sum_probs=39.3
Q ss_pred EEEecccccHHHHHHHHHHHhhcCCCCCceEEEEeCCEecCCCCcHHHH
Q psy7979 115 FIRLSSQATITHLKKFVALKLLDEKSKYKEIDILCNDELLGKDHTLKFV 163 (186)
Q Consensus 115 ylrcs~~~tV~hLkKfL~~Kl~~~l~~~~~veIlc~~~~L~~~~TL~~I 163 (186)
-+.++...||..||+-|+.+. ++|.. +.-++++|.+|.++.||.+.
T Consensus 25 ~l~v~~~~TV~~LK~~I~~~~--gip~~-~qrL~~~Gk~L~D~~tL~~~ 70 (85)
T 2kd0_A 25 PLSVSPDCTVKDLKSQLQPIT--NVLPR-GQKLIFKGKVLVETSTLKQS 70 (85)
T ss_dssp EEEECTTSBHHHHHHHHHHHH--CCCTT-TCEEEETTEECCTTCBTTTT
T ss_pred EEEECCCCcHHHHHHHHHHHH--CcChH-HEEEEECCeECCCcCCHHHC
Confidence 478899999999999999999 88865 44577899999999999764
No 41
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=94.06 E-value=0.078 Score=37.94 Aligned_cols=60 Identities=17% Similarity=0.249 Sum_probs=46.9
Q ss_pred ccEEEecccccHHHHHHHHHHHhhcCCCCCceEEEEeCCEecCCCCcHHHHHHHhccCCCCCeeEEE
Q psy7979 113 KRFIRLSSQATITHLKKFVALKLLDEKSKYKEIDILCNDELLGKDHTLKFVYITRWRFRTPPLKLQY 179 (186)
Q Consensus 113 ~~ylrcs~~~tV~hLkKfL~~Kl~~~l~~~~~veIlc~~~~L~~~~TL~~I~~~~W~~~~~Pm~L~Y 179 (186)
+--+.|.+.-||..||+-|+.|. ++|...+. +.++|..|.++.||.+--+. ...-|.|+|
T Consensus 33 k~~v~v~p~DTI~~LK~~I~~k~--Gip~~qQr-Lif~Gk~LkD~~TL~dY~I~----dgstLhL~~ 92 (93)
T 3plu_A 33 KVRVKCLGEDSVGDFKKVLSLQI--GTQPNKIV-LQKGGSVLKDHISLEDYEVH----DQTNLELYY 92 (93)
T ss_dssp EEEEEEETTSBHHHHHHHHHHHH--TCCGGGEE-EEETTEECCTTSBTGGGTCC----TTCEEEEEE
T ss_pred EEEEEECCcCHHHHHHHHHHHHh--CCCHHHEE-EEeCCEEccCcCCHHHcCCC----CCCEEEEEe
Confidence 44588999999999999999999 88876554 66699999999999763221 235677777
No 42
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=93.97 E-value=0.087 Score=34.93 Aligned_cols=59 Identities=15% Similarity=0.161 Sum_probs=44.8
Q ss_pred EEE-ecccccHHHHHHHHHHHhhcCCCCCceEEEEeCCEecCCCCcHHHHHHHhccCCCCCeeEEEe
Q psy7979 115 FIR-LSSQATITHLKKFVALKLLDEKSKYKEIDILCNDELLGKDHTLKFVYITRWRFRTPPLKLQYR 180 (186)
Q Consensus 115 ylr-cs~~~tV~hLkKfL~~Kl~~~l~~~~~veIlc~~~~L~~~~TL~~I~~~~W~~~~~Pm~L~Yr 180 (186)
.+. ++...||..||.-|+.+. +++.. +.-++++|..|.++.||.+.-+ . ....+.|..|
T Consensus 17 ~l~~v~~~~tv~~lK~~i~~~~--gip~~-~qrL~~~g~~L~d~~tL~~~~i---~-~g~~i~l~~r 76 (78)
T 2faz_A 17 TVDSLSRLTKVEELRRKIQELF--HVEPG-LQRLFYRGKQMEDGHTLFDYEV---R-LNDTIQLLVR 76 (78)
T ss_dssp EEEEECTTCBHHHHHHHHHHHH--CCCGG-GEEEEETTEECCTTCBTTTTTC---C-TTCEEEEEEC
T ss_pred EEeccCCCCCHHHHHHHHHHHH--CcChh-hEEEEECCEECCCCCCHHHcCC---C-CCCEEEEEEe
Confidence 377 899999999999999999 88855 5557889999999999976422 1 1345555544
No 43
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=93.94 E-value=0.12 Score=37.25 Aligned_cols=57 Identities=21% Similarity=0.184 Sum_probs=45.4
Q ss_pred EEecccccHHHHHHHHHHHhhcCCCCCceEEEEeCCEecCCCCcHHHHHHHhccCCCCCeeEEE
Q psy7979 116 IRLSSQATITHLKKFVALKLLDEKSKYKEIDILCNDELLGKDHTLKFVYITRWRFRTPPLKLQY 179 (186)
Q Consensus 116 lrcs~~~tV~hLkKfL~~Kl~~~l~~~~~veIlc~~~~L~~~~TL~~I~~~~W~~~~~Pm~L~Y 179 (186)
|.|+...||..||+-|+.+- +++.. +.-+.+.|.+|.++.||.+--+ ....-+.|.|
T Consensus 43 lev~p~dTV~~lK~~Ia~k~--Gip~~-qQrLi~~Gk~L~D~~TL~dygI----~~gstlhL~~ 99 (100)
T 1uh6_A 43 VKCNTDDTIGDLKKLIAAQT--GTRWN-KIVLKKWYTIFKDHVSLGDYEI----HDGMNLELYY 99 (100)
T ss_dssp EEEETTSBHHHHHHHHHHHH--CCCGG-GCEEEETTEECCSSCBHHHHTC----CTTEEEEEEC
T ss_pred EEeCCCCcHHHHHHHHHHHh--CCCHH-HEEEEECCEECCCCCCHHHcCC----CCCCEEEEEe
Confidence 78999999999999999998 88855 4447788999999999987422 2234577777
No 44
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=93.68 E-value=0.096 Score=36.61 Aligned_cols=46 Identities=15% Similarity=0.109 Sum_probs=39.9
Q ss_pred EEEecccccHHHHHHHHHHHhhcCCCCCceEEEEeCCEecCCCCcHHHH
Q psy7979 115 FIRLSSQATITHLKKFVALKLLDEKSKYKEIDILCNDELLGKDHTLKFV 163 (186)
Q Consensus 115 ylrcs~~~tV~hLkKfL~~Kl~~~l~~~~~veIlc~~~~L~~~~TL~~I 163 (186)
-+.++...||..||+-|+.+. +++.. +.-++++|.+|.++.||.+.
T Consensus 14 ~~~v~~~~TV~~LK~~I~~~~--gi~~~-~qrL~~~Gk~L~D~~tL~~~ 59 (98)
T 1yx5_B 14 TLEVEPSDTIENVKAKIQDKE--GIPPD-QQRLIFAGKQLEDGRTLSDY 59 (98)
T ss_dssp EEECCTTCBHHHHHHHHHHHT--CCCGG-GEEEEETTEECCTTSBTGGG
T ss_pred EEEECCCCcHHHHHHHHHHHH--CcChh-hEEEEECCEECCCCCCHHHc
Confidence 477889999999999999999 88855 66688999999999999864
No 45
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=93.67 E-value=0.16 Score=35.62 Aligned_cols=74 Identities=9% Similarity=0.139 Sum_probs=53.6
Q ss_pred CceeEEEEeccCCCCccccccccEEEecccccHHHHHHHHHHHhhcCCCCCceEEEEeCCEecCCCCcHHHHHHHhccCC
Q psy7979 92 EQVNVYLECSVATTSSLKTLKKRFIRLSSQATITHLKKFVALKLLDEKSKYKEIDILCNDELLGKDHTLKFVYITRWRFR 171 (186)
Q Consensus 92 e~vsl~LE~~~~~~~~l~~l~~~ylrcs~~~tV~hLkKfL~~Kl~~~l~~~~~veIlc~~~~L~~~~TL~~I~~~~W~~~ 171 (186)
+.|.|.+... .+ ..-.+.+....||..||+.|+.+. +++.. +.-++++|..|.++.||.+.-+. .
T Consensus 20 ~~m~I~Vk~~--~g------~~~~l~v~~~~tv~~lK~~i~~~~--gip~~-~qrLif~Gk~L~d~~tl~dy~i~----~ 84 (97)
T 1wyw_B 20 EYIKLKVIGQ--DS------SEIHFKVKMTTHLKKLKESYCQRQ--GVPMN-SLRFLFEGQRIADNHTPKELGME----E 84 (97)
T ss_dssp CEEEEEEECT--TC------CEEEEEEETTSCTHHHHHHHHHHH--TCCGG-GEEEEETTEECCTTCCHHHHTCC----T
T ss_pred CcEEEEEEeC--CC------CEEEEEECCCCcHHHHHHHHHHHH--CCChh-hEEEEECCeEcCCCCCHHHCCCC----C
Confidence 3477777432 11 223688999999999999999999 88855 66789999999999999875322 1
Q ss_pred CCCeeEEEe
Q psy7979 172 TPPLKLQYR 180 (186)
Q Consensus 172 ~~Pm~L~Yr 180 (186)
..-+.|..|
T Consensus 85 g~~I~l~~~ 93 (97)
T 1wyw_B 85 EDVIEVYQE 93 (97)
T ss_dssp TCEEEEEES
T ss_pred CCEEEEEEe
Confidence 335666554
No 46
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=93.56 E-value=0.18 Score=36.38 Aligned_cols=48 Identities=19% Similarity=0.104 Sum_probs=40.5
Q ss_pred ccEEEecccccHHHHHHHHHHHhhcCCCCCceEEEEeCCEecCCCCcHHHH
Q psy7979 113 KRFIRLSSQATITHLKKFVALKLLDEKSKYKEIDILCNDELLGKDHTLKFV 163 (186)
Q Consensus 113 ~~ylrcs~~~tV~hLkKfL~~Kl~~~l~~~~~veIlc~~~~L~~~~TL~~I 163 (186)
+--+.++...||..||.-|+.+. ++|...+- +.|+|.+|.++.||.+-
T Consensus 31 ~~~lev~~~~TV~~lK~kI~~k~--gip~~qQr-LI~~GKiL~D~~TL~~y 78 (100)
T 1wju_A 31 KNLLETRLHITGRELRSKIAETF--GLQENYIK-IVINKKQLQLGKTLEEQ 78 (100)
T ss_dssp SEEEEEESSSBHHHHHHHHHHHT--TCCSTTCE-EEETTEECCTTSBHHHH
T ss_pred EEEEEeCCcCHHHHHHHHHHHHH--CcCHHHeE-EEeCCeECCCCCcHHHc
Confidence 34577899999999999999999 88866554 55889999999999874
No 47
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=93.55 E-value=0.13 Score=37.10 Aligned_cols=60 Identities=17% Similarity=0.110 Sum_probs=46.1
Q ss_pred cEEEecccccHHHHHHHHHHHhhcCCCCCceEEEEeCCEecCCCCcHHHHHHHhccCCCCCeeEEEe
Q psy7979 114 RFIRLSSQATITHLKKFVALKLLDEKSKYKEIDILCNDELLGKDHTLKFVYITRWRFRTPPLKLQYR 180 (186)
Q Consensus 114 ~ylrcs~~~tV~hLkKfL~~Kl~~~l~~~~~veIlc~~~~L~~~~TL~~I~~~~W~~~~~Pm~L~Yr 180 (186)
-.+.++...||..||..|+.+. ++|.. +.-++|+|..|.++.||.+.- ... ..-+.|..|
T Consensus 48 ~~l~v~~~~TV~~LK~~I~~~~--gip~~-~QrLi~~Gk~L~D~~tL~~~g---I~~-gs~I~l~~r 107 (111)
T 3vdz_A 48 ITLEVEPSDTIENVKAKIQDKE--GIPPD-QQRLIFAGKQLEDGRTLSDYN---IQK-ESTLHLVLR 107 (111)
T ss_dssp EEEEECTTCBHHHHHHHHHHHH--CCCGG-GEEEEETTEECCTTSBTTTTT---CCT-TCEEEEEEC
T ss_pred EEEEeCCCCCHHHHHHHHHHHh--CCChH-HEEEEECCEECCCCCcHHHCC---CCC-CCEEEEEEe
Confidence 3578999999999999999999 88855 556889999999999998742 222 345555544
No 48
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=93.46 E-value=0.11 Score=36.83 Aligned_cols=46 Identities=9% Similarity=0.227 Sum_probs=40.1
Q ss_pred EEEecccccHHHHHHHHHHHhhcCCCCCceEEEEeCCEecCCCCcHHHH
Q psy7979 115 FIRLSSQATITHLKKFVALKLLDEKSKYKEIDILCNDELLGKDHTLKFV 163 (186)
Q Consensus 115 ylrcs~~~tV~hLkKfL~~Kl~~~l~~~~~veIlc~~~~L~~~~TL~~I 163 (186)
-+.++...||..||+.|+.+. +++.. +.-++++|..|.++.||.+.
T Consensus 38 ~l~v~~~~TV~~LK~~I~~~~--gip~~-~qrLi~~Gk~L~D~~tL~~~ 83 (101)
T 2klc_A 38 EFAVPENSSVQQFKEEISKRF--KSHTD-QLVLIFAGKILKDQDTLSQH 83 (101)
T ss_dssp EEEECSCCCHHHHHHHHHHHH--TCCGG-GEEEEETTEEECTTCCTGGG
T ss_pred EEEECCCCCHHHHHHHHHHHH--CcChh-hEEEEECCEECCCcCcHHHc
Confidence 478899999999999999999 88854 56688899999999999874
No 49
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=93.34 E-value=0.066 Score=38.16 Aligned_cols=63 Identities=10% Similarity=0.183 Sum_probs=44.9
Q ss_pred CCCCceeEEEEeccCCCCccccccccEEEecccccHHHHHHHHHHHhhcCCCCCceEEEEeCCEecCCCCcHHHH
Q psy7979 89 RLDEQVNVYLECSVATTSSLKTLKKRFIRLSSQATITHLKKFVALKLLDEKSKYKEIDILCNDELLGKDHTLKFV 163 (186)
Q Consensus 89 ~~de~vsl~LE~~~~~~~~l~~l~~~ylrcs~~~tV~hLkKfL~~Kl~~~l~~~~~veIlc~~~~L~~~~TL~~I 163 (186)
+.+-+|+|.+... +.. -.+.++...||..||.-|+.+. +++...+ -++++|..|.++.||.+.
T Consensus 24 ~~~m~i~I~Vk~~---g~~------~~l~v~~~~TV~~LK~~I~~~~--gip~~~Q-rLi~~Gk~L~D~~tL~~~ 86 (101)
T 3m63_B 24 QGAMSLNIHIKSG---QDK------WEVNVAPESTVLQFKEAINKAN--GIPVANQ-RLIYSGKILKDDQTVESY 86 (101)
T ss_dssp -----CCEEEECS---SCC------CCBCCCTTSBHHHHHHHHHHHH--SCCSTTC-CEEETTEECCTTSBTTTT
T ss_pred cCCcEEEEEEEEC---CEE------EEEEeCCCCCHHHHHHHHHHHH--CcChHHE-EEEECCEECCCcCcHHHC
Confidence 3444567766531 222 2467889999999999999999 8886654 578899999999999764
No 50
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=93.31 E-value=0.077 Score=39.57 Aligned_cols=46 Identities=26% Similarity=0.408 Sum_probs=27.5
Q ss_pred CCCCCCcccccccccCCccccccchhHHhhhHhhcccchhhHHHHHHHHHHH
Q psy7979 10 IKNTCPSCNIIIHQSHPLQYISFDRTMQDLVYKLVPNLQANEMKREREFYRI 61 (186)
Q Consensus 10 ~~~~CP~C~~~ih~s~Pl~~i~~D~tLQdIVyKLVPgL~~~E~~rr~eFy~~ 61 (186)
.+..||.|...|. +.+. ++ .+..+|.++|..|.....++|....+.
T Consensus 86 ~~~~CP~Cr~~~~-~~~~-~~----~~~~~i~~~~~~l~~~~~~rr~~~~~e 131 (138)
T 4ayc_A 86 RKIECPICRKDIK-SKTY-SL----VLDNCINKMVNNLSSEVKERRIVLIRE 131 (138)
T ss_dssp TCSBCTTTCCBCC-CEEE-CH----HHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred cCCcCCCCCCcCC-CCCC-cc----chhHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3578999999994 4442 44 444555566666655555555544443
No 51
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=93.25 E-value=0.16 Score=36.30 Aligned_cols=46 Identities=11% Similarity=0.045 Sum_probs=39.7
Q ss_pred EEEecccccHHHHHHHHHHHhhcCCCCCceEEEEeCCEecCCCCcHHHH
Q psy7979 115 FIRLSSQATITHLKKFVALKLLDEKSKYKEIDILCNDELLGKDHTLKFV 163 (186)
Q Consensus 115 ylrcs~~~tV~hLkKfL~~Kl~~~l~~~~~veIlc~~~~L~~~~TL~~I 163 (186)
.+.++...||..||.-|..+. +++.. +.-++++|..|.++.||.+.
T Consensus 37 ~l~v~~~~TV~~LK~~I~~~~--gip~~-~qrLi~~Gk~L~D~~tL~~y 82 (106)
T 1ttn_A 37 KLVVRSTDTVFHMKRRLHAAE--GVEPG-SQRWFFSGRPLTDKMKFEEL 82 (106)
T ss_dssp EEEECTTSHHHHHHHHHHHTT--CCCST-TCEEEETTEECCTTSHHHHC
T ss_pred EEEeCCCCcHHHHHHHHHHHH--CcCcc-cEEEEECCEECCCCCcHHHc
Confidence 488999999999999999998 88855 44578899999999999874
No 52
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=93.16 E-value=0.15 Score=34.25 Aligned_cols=48 Identities=17% Similarity=0.191 Sum_probs=39.1
Q ss_pred EEEecccccHHHHHHHHHHHhh-cCCCCCceEEEEeCCEecCCCCcHHHH
Q psy7979 115 FIRLSSQATITHLKKFVALKLL-DEKSKYKEIDILCNDELLGKDHTLKFV 163 (186)
Q Consensus 115 ylrcs~~~tV~hLkKfL~~Kl~-~~l~~~~~veIlc~~~~L~~~~TL~~I 163 (186)
.+.++...||..||.-|+.+++ .+++.. +.-++++|..|.++.||.+.
T Consensus 19 ~~~v~~~~TV~~lK~~i~~~~~~~gip~~-~qrLi~~Gk~L~D~~tL~~~ 67 (85)
T 2wyq_A 19 KIRMEPDETVKVLKEKIEAEKGRDAFPVA-GQKLIYAGKILSDDVPIRDY 67 (85)
T ss_dssp EEEECTTSBHHHHHHHHHHHHCTTTCCGG-GEEEEETTEECCTTSBGGGG
T ss_pred EEEECCCCCHHHHHHHHHhhccccCCCHH-HeEEEECCEECcCCCCHHHc
Confidence 4788999999999999999841 256644 55688899999999999864
No 53
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.84 E-value=0.2 Score=37.29 Aligned_cols=46 Identities=17% Similarity=0.187 Sum_probs=39.8
Q ss_pred EEEecccccHHHHHHHHHHHhhcCCCCCceEEEEeCCEecCCCCcHHHH
Q psy7979 115 FIRLSSQATITHLKKFVALKLLDEKSKYKEIDILCNDELLGKDHTLKFV 163 (186)
Q Consensus 115 ylrcs~~~tV~hLkKfL~~Kl~~~l~~~~~veIlc~~~~L~~~~TL~~I 163 (186)
=+-++..+||..||..|+.++ ++|.+ ...+.|+|.+|.++-||...
T Consensus 30 tv~v~~d~TV~dLKe~ls~~~--~iP~e-~qrLIy~GKiLKD~eTL~~~ 75 (118)
T 2daf_A 30 VIPFKVDTILKYLKDHFSHLL--GIPHS-VLQIRYSGKILKNNETLVQH 75 (118)
T ss_dssp EEEECSSSCSHHHHHHHHHHH--TCCTT-TEEEEETTEEECSSCCHHHH
T ss_pred EEEeCCCCcHHHHHHHHHhhh--CCChH-HEEEEECCeEcCCcchHHHc
Confidence 344789999999999999999 88866 55588899999999999875
No 54
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=92.79 E-value=0.18 Score=36.24 Aligned_cols=60 Identities=18% Similarity=0.176 Sum_probs=45.7
Q ss_pred EEEecccccHHHHHHHHHHHhhcCCCCCceEEEEeCCEecCCCCcHHHHHHHhccCCCCCeeEEEee
Q psy7979 115 FIRLSSQATITHLKKFVALKLLDEKSKYKEIDILCNDELLGKDHTLKFVYITRWRFRTPPLKLQYRP 181 (186)
Q Consensus 115 ylrcs~~~tV~hLkKfL~~Kl~~~l~~~~~veIlc~~~~L~~~~TL~~I~~~~W~~~~~Pm~L~Yr~ 181 (186)
.+.++...||..||+-|+.+. +++.. +.-++++|..|.++.||.+.-+ . ...-+.|..|.
T Consensus 49 ~l~v~~~~TV~~LK~~I~~~~--gip~~-~qrLi~~Gk~L~D~~tL~~~gI---~-~gs~I~l~~rl 108 (111)
T 2ojr_A 49 TLEVEPSDTIENVKAKIQDKE--GIPPD-QQRLIFAGKQLEDGRTLSDYNI---Q-KESTLHLVLRL 108 (111)
T ss_dssp EEEECTTCBHHHHHHHHHHHH--CCCTT-TEEEEETTEECCSSCBTTTTTC---C-TTCEEEEEECC
T ss_pred EEEeCCCCCHHHHHHHHHHHH--CcCcc-cEEEEECCEECCCCCcHHHcCC---C-CCCEEEEEEeC
Confidence 578899999999999999999 88855 5558889999999999976422 1 13455555543
No 55
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=92.70 E-value=0.29 Score=33.81 Aligned_cols=48 Identities=13% Similarity=0.133 Sum_probs=38.4
Q ss_pred EEEecccccHHHHHHHHHHHhhcCCCCCceEEEEeCCEecCCCCcHHHH
Q psy7979 115 FIRLSSQATITHLKKFVALKLLDEKSKYKEIDILCNDELLGKDHTLKFV 163 (186)
Q Consensus 115 ylrcs~~~tV~hLkKfL~~Kl~~~l~~~~~veIlc~~~~L~~~~TL~~I 163 (186)
-+.|+...||..||+-|+.+...+++.. +.-++++|.+|.++.||.+.
T Consensus 23 ~v~v~~~~TV~~lK~~I~~~~~~~i~~~-~QrLi~~Gk~L~D~~tL~~~ 70 (93)
T 1wgd_A 23 ELSGDRGWSVGHLKAHLSRVYPERPRPE-DQRLIYSGKLLLDHQCLRDL 70 (93)
T ss_dssp EEECCTTSCHHHHHHHHHHHSTTCCCTT-TCEEEETTEECCSSSCHHHH
T ss_pred EEecCCCCcHHHHHHHHHHHhcCCCChH-HeEEEECCEECcCcCCHHHH
Confidence 3567799999999999999862245644 44578899999999999876
No 56
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=92.69 E-value=0.24 Score=35.78 Aligned_cols=60 Identities=7% Similarity=0.114 Sum_probs=45.7
Q ss_pred EEEecccccHHHHHHHHHHHhhcCCCCCceEEEEeCCEecCCCCcHHHHHHHhccCCCCCeeEEEee
Q psy7979 115 FIRLSSQATITHLKKFVALKLLDEKSKYKEIDILCNDELLGKDHTLKFVYITRWRFRTPPLKLQYRP 181 (186)
Q Consensus 115 ylrcs~~~tV~hLkKfL~~Kl~~~l~~~~~veIlc~~~~L~~~~TL~~I~~~~W~~~~~Pm~L~Yr~ 181 (186)
-+.++...||..||.-|..+. +++.. +.-++++|..|.++.||.+.-+. ....+.|..|.
T Consensus 49 ~l~v~~~~TV~~LK~~I~~~~--gip~~-~QrL~~~Gk~L~D~~tL~~y~i~----~g~~i~lv~rl 108 (115)
T 1we7_A 49 VFTLPLTDQVSVIKVKIHEAT--GMPAG-KQKLQYEGIFIKDSNSLAYYNMA----SGAVIHLALKE 108 (115)
T ss_dssp EEEECSCSBTHHHHHHHHHHS--SCCTT-TEEEEETTEEECTTSBHHHHTCC----SSCEEEEEECC
T ss_pred EEEECCCCCHHHHHHHHHHHH--CCChH-HEEEEECCEECCCCCCHHHCCCC----CCCEEEEEEEc
Confidence 478899999999999999998 88865 44577889999999999875321 13455555543
No 57
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=92.64 E-value=0.18 Score=37.32 Aligned_cols=60 Identities=10% Similarity=0.243 Sum_probs=46.8
Q ss_pred CceeEEEEeccCCCCccccccccEEEecccccHHHHHHHHHHHhhcCCCCCceEEEEeCCEecCCCCcHHHH
Q psy7979 92 EQVNVYLECSVATTSSLKTLKKRFIRLSSQATITHLKKFVALKLLDEKSKYKEIDILCNDELLGKDHTLKFV 163 (186)
Q Consensus 92 e~vsl~LE~~~~~~~~l~~l~~~ylrcs~~~tV~hLkKfL~~Kl~~~l~~~~~veIlc~~~~L~~~~TL~~I 163 (186)
..|.|.+... + ..-.+.++...||..||+.|..+. +++.. +.-++++|..|.++.||.+.
T Consensus 31 ~~m~I~Vk~~---g------~~~~l~v~~~~TV~~LK~~I~~~~--gip~~-~QrLi~~Gk~L~D~~tL~dy 90 (125)
T 1j8c_A 31 KIIKVTVKTP---K------EKEEFAVPENSSVQQFKEAISKRF--KSQTD-QLVLIFAGKILKDQDTLIQH 90 (125)
T ss_dssp CCEEEEEECS---S------CEEEEEECTTCCHHHHHHHHHHHH--CSCSS-SEEEEETTEEESTTSCGGGT
T ss_pred CcEEEEEEeC---C------eEEEEEECCCCcHHHHHHHHHHHH--CcCcc-eEEEEECCEEcCCCCCHHHc
Confidence 3577777542 1 122578899999999999999999 88854 56688899999999999874
No 58
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=92.56 E-value=0.1 Score=37.44 Aligned_cols=46 Identities=17% Similarity=0.220 Sum_probs=39.5
Q ss_pred EEEecccccHHHHHHHHHHHhhcCCCCCceEEEEeCCEecCCCCcHHHH
Q psy7979 115 FIRLSSQATITHLKKFVALKLLDEKSKYKEIDILCNDELLGKDHTLKFV 163 (186)
Q Consensus 115 ylrcs~~~tV~hLkKfL~~Kl~~~l~~~~~veIlc~~~~L~~~~TL~~I 163 (186)
.|.++...||..||..|..+. +++... .-++++|..|.++.||.+.
T Consensus 15 ~l~v~~~~TV~~LK~~I~~~~--gip~~~-QrLi~~Gk~L~D~~tL~~~ 60 (106)
T 3m62_B 15 PLDLEPSNTILETKTKLAQSI--SCEESQ-IKLIYSGKVLQDSKTVSEC 60 (106)
T ss_dssp EECCCTTSBHHHHHHHHHHTT--TSCGGG-CEEEETTEECCTTSBTTTT
T ss_pred EEEECCCCcHHHHHHHHHHHH--CCChhh-EEEEECCEECCCcCCHHHc
Confidence 467889999999999999999 887554 4688899999999999874
No 59
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=92.25 E-value=0.21 Score=35.68 Aligned_cols=48 Identities=21% Similarity=0.146 Sum_probs=38.8
Q ss_pred EEEecccccHHHHHHHHHHHhhcCCCCCceEEEEeCCEecCCCCcHHHH
Q psy7979 115 FIRLSSQATITHLKKFVALKLLDEKSKYKEIDILCNDELLGKDHTLKFV 163 (186)
Q Consensus 115 ylrcs~~~tV~hLkKfL~~Kl~~~l~~~~~veIlc~~~~L~~~~TL~~I 163 (186)
-|.++...||..||.-|+.++. +.+...+.-++|.|.+|.++.||.+.
T Consensus 39 ~l~v~~~~TV~~LK~~I~~~~~-g~pp~~~QrLIy~Gk~L~D~~tL~~y 86 (99)
T 2kdb_A 39 TISCFLNWTVGKLKTHLSNVYP-SKPLTKDQRLVYSGRLLPDHLQLKDI 86 (99)
T ss_dssp EEEECTTSBHHHHHHHHHHHST-TCCCTTTCCEEETTEEECTTSBTHHH
T ss_pred EEEcCCCCHHHHHHHHHHHHhc-CCCChhhEEEEECCEECCCCCCHHHH
Confidence 4678999999999999999863 34543455577899999999999875
No 60
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=92.24 E-value=0.25 Score=34.98 Aligned_cols=45 Identities=16% Similarity=0.274 Sum_probs=38.3
Q ss_pred EEecccccHHHHHHHHHHHhhcCCCCCceEEEEeCCEecCCC-CcHHHH
Q psy7979 116 IRLSSQATITHLKKFVALKLLDEKSKYKEIDILCNDELLGKD-HTLKFV 163 (186)
Q Consensus 116 lrcs~~~tV~hLkKfL~~Kl~~~l~~~~~veIlc~~~~L~~~-~TL~~I 163 (186)
+.++...||..||..|+.+. +++.. +.-++++|.+|.++ .||.+.
T Consensus 26 i~v~~~~TV~~LK~~I~~~~--gip~~-~qrL~~~gk~L~D~~~tL~~y 71 (102)
T 1v5o_A 26 LQVNPDFELSNFRVLCELES--GVPAE-EAQIVYMEQLLTDDHCSLGSY 71 (102)
T ss_dssp EEECTTCBHHHHHHHHHHHT--CCCGG-GBCEEETTEEECCSSSBHHHH
T ss_pred EEcCCCCCHHHHHHHHHHHH--CcChH-HeEEEECCEECCCCcccHHHC
Confidence 78899999999999999999 88865 44478899999887 689875
No 61
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=91.99 E-value=0.28 Score=34.09 Aligned_cols=48 Identities=19% Similarity=0.198 Sum_probs=39.3
Q ss_pred EEEecccccHHHHHHHHHHHhh-cCCCCCceEEEEeCCEecCCCCcHHHH
Q psy7979 115 FIRLSSQATITHLKKFVALKLL-DEKSKYKEIDILCNDELLGKDHTLKFV 163 (186)
Q Consensus 115 ylrcs~~~tV~hLkKfL~~Kl~-~~l~~~~~veIlc~~~~L~~~~TL~~I 163 (186)
.+.++...||..||+-|+.+++ .+++.. +.-++++|..|.++.||.+.
T Consensus 14 ~~~v~~~~TV~~LK~~I~~~~~~~gip~~-~qrLi~~Gk~L~D~~tL~~y 62 (95)
T 1uel_A 14 KIDIDPEETVKALKEKIESEKGKDAFPVA-GQKLIYAGKILNDDTALKEY 62 (95)
T ss_dssp EEECCTTSBHHHHHHHHHHHHCTTTCCTT-TEEEEETTEECCTTSBGGGG
T ss_pred EEEECCCCHHHHHHHHHHhhcccCCCChh-hEEEEECCEECCCcCcHHHC
Confidence 5788899999999999999952 257754 55688899999999999864
No 62
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=91.92 E-value=0.22 Score=36.11 Aligned_cols=46 Identities=17% Similarity=0.125 Sum_probs=39.8
Q ss_pred EEEecccccHHHHHHHHHHHhhcCCCCCceEEEEeCCEecCCCCcHHHH
Q psy7979 115 FIRLSSQATITHLKKFVALKLLDEKSKYKEIDILCNDELLGKDHTLKFV 163 (186)
Q Consensus 115 ylrcs~~~tV~hLkKfL~~Kl~~~l~~~~~veIlc~~~~L~~~~TL~~I 163 (186)
.+.++...||..||.-|+.+. ++|.. +.-++++|.+|.++.||.+.
T Consensus 23 ~l~v~~~~TV~~LK~~I~~~~--gip~~-~qrLi~~Gk~L~D~~tL~~y 68 (114)
T 2kdi_A 23 TLEVESSDTIDNVKSKIQDKE--GIPPD-QQRLIWAGKQLEDGRTLSDY 68 (114)
T ss_dssp EEECCTTCBHHHHHHHHHHHH--CCCGG-GEEEEETTEECCTTCBTTTT
T ss_pred EEEECCCCcHHHHHHHHHHHH--CcChH-HEEEEECCEECCCCCcHHHC
Confidence 578899999999999999999 88855 55688899999999999764
No 63
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=91.78 E-value=0.061 Score=38.65 Aligned_cols=40 Identities=15% Similarity=0.230 Sum_probs=31.3
Q ss_pred CCCCCCcccccccc---cCCccccccchhHHhhhHhhcccchh
Q psy7979 10 IKNTCPSCNIIIHQ---SHPLQYISFDRTMQDLVYKLVPNLQA 49 (186)
Q Consensus 10 ~~~~CP~C~~~ih~---s~Pl~~i~~D~tLQdIVyKLVPgL~~ 49 (186)
.+..||.|...+.. ..+..++..|.+|++++.+++|.-.+
T Consensus 49 ~~~~CP~Cr~~~~~~~~~~~~~~~~~n~~l~~~i~~~~p~~~~ 91 (115)
T 3l11_A 49 ASLCCPFCRRRVSSWTRYHTRRNSLVNVELWTIIQKHYPRECK 91 (115)
T ss_dssp TTSBCTTTCCBCHHHHHHHHHTTCCBCHHHHHHHHHHSHHHHH
T ss_pred CcCCCCCCCcccCccccccccccchhhHHHHHHHHHHCCHHHH
Confidence 35789999999853 23445778899999999999988543
No 64
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=91.51 E-value=0.54 Score=32.24 Aligned_cols=46 Identities=13% Similarity=0.183 Sum_probs=37.1
Q ss_pred EEEeccc-----ccHHHHHHHHHHHhhcCCCCCceEEEEeCCEecCC-CCcHHHH
Q psy7979 115 FIRLSSQ-----ATITHLKKFVALKLLDEKSKYKEIDILCNDELLGK-DHTLKFV 163 (186)
Q Consensus 115 ylrcs~~-----~tV~hLkKfL~~Kl~~~l~~~~~veIlc~~~~L~~-~~TL~~I 163 (186)
-+.++.. .||..||.-|..+. +++.. +.-++++|..|.+ +.||.+.
T Consensus 20 ~i~v~~~~~~~~~TV~~LK~~i~~~~--gip~~-~qrL~~~Gk~L~D~~~~L~~~ 71 (92)
T 1wxv_A 20 DLHVTSQQGSSEPVVQDLAQVVEEVI--GVPQS-FQKLIFKGKSLKEMETPLSAL 71 (92)
T ss_dssp EEEECCCSSSSSCBHHHHHHHHHHHT--CCCTT-TCEEEETTEEECCSSSBHHHH
T ss_pred EEEECCCcCcccCcHHHHHHHHHHHH--CcCHH-HEEEEECCeecCCCcccHHHC
Confidence 3677774 99999999999999 88865 4457788999988 6689875
No 65
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=91.47 E-value=0.3 Score=37.91 Aligned_cols=46 Identities=17% Similarity=0.151 Sum_probs=40.2
Q ss_pred EEEecccccHHHHHHHHHHHhhcCCCCCceEEEEeCCEecCCCCcHHHH
Q psy7979 115 FIRLSSQATITHLKKFVALKLLDEKSKYKEIDILCNDELLGKDHTLKFV 163 (186)
Q Consensus 115 ylrcs~~~tV~hLkKfL~~Kl~~~l~~~~~veIlc~~~~L~~~~TL~~I 163 (186)
.+.++...||..||.-|+.+. ++|...+ -++++|..|.++.||.+.
T Consensus 14 ~l~v~~~~TV~~LK~~I~~~~--gip~~~Q-rLi~~Gk~L~D~~tL~~y 59 (169)
T 3l0w_B 14 TLEVESSDTIDNVKSKIQDKE--GIPPDQQ-RLIFAGKQLEDGRTLSDY 59 (169)
T ss_dssp EEECCTTCBHHHHHHHHHHHH--CCCTTTE-EEEETTEECCTTSBGGGG
T ss_pred EEEeCCCCCHHHHHHHHHHHH--CcCHHHE-EEEECCccccCcCcHHHc
Confidence 478899999999999999999 8886654 588899999999999874
No 66
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=91.37 E-value=0.44 Score=32.82 Aligned_cols=45 Identities=20% Similarity=0.239 Sum_probs=38.8
Q ss_pred E-EecccccHHHHHHHHHHHhhcCCCCCceEEEE---eCCEecCCCCcHHHH
Q psy7979 116 I-RLSSQATITHLKKFVALKLLDEKSKYKEIDIL---CNDELLGKDHTLKFV 163 (186)
Q Consensus 116 l-rcs~~~tV~hLkKfL~~Kl~~~l~~~~~veIl---c~~~~L~~~~TL~~I 163 (186)
| .++...||..||.-|+.+. +++...+- ++ ++|.+|.++.||.+.
T Consensus 21 i~~v~~~~TV~~lK~~I~~~~--gip~~~Qk-Li~~k~~Gk~L~D~~~L~~~ 69 (90)
T 1v5t_A 21 VTTLSEDDTVLDLKQFLKTLT--GVLPERQK-LLGLKVKGKPAENDVKLGAL 69 (90)
T ss_dssp ECSCCSSSBHHHHHHHHHHHT--CCCTTTCE-EESCEETTEECCTTSBHHHH
T ss_pred EEEeCCCCCHHHHHHHHHHHH--CcCHHHeE-EEeeccCCcCcCCCCCHHHc
Confidence 5 6789999999999999999 88866554 67 899999999999875
No 67
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=91.22 E-value=0.32 Score=33.86 Aligned_cols=44 Identities=16% Similarity=0.169 Sum_probs=36.5
Q ss_pred ecccccHHHHHHHH-HHHhhcCCCCCceEEEEeCCEecCCCCcHHHHH
Q psy7979 118 LSSQATITHLKKFV-ALKLLDEKSKYKEIDILCNDELLGKDHTLKFVY 164 (186)
Q Consensus 118 cs~~~tV~hLkKfL-~~Kl~~~l~~~~~veIlc~~~~L~~~~TL~~I~ 164 (186)
++...||..||.-| +.+- ++|...+ -++++|.+|.++.||.+..
T Consensus 20 v~~~~TV~~lK~~I~~~~~--gip~~~Q-rLi~~Gk~L~D~~tL~~y~ 64 (87)
T 2lxa_A 20 FSPSDTILQIKQHLISEEK--ASHISEI-KLLLKGKVLHDNLFLSDLK 64 (87)
T ss_dssp CCTTCBHHHHHHHHHHTTS--CSSSTTE-EEEETTEECCTTCBHHHHC
T ss_pred CCCCCcHHHHHHHHHHHhc--CCChHHE-EEEECCEECcCcCCHHHcC
Confidence 45899999999999 8777 7886644 5778999999999998754
No 68
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=90.52 E-value=0.039 Score=36.44 Aligned_cols=47 Identities=17% Similarity=0.193 Sum_probs=39.3
Q ss_pred EEEecccccHHHHHHHHHHHhhcCCCCCceEEEEeCCEecCCCCcHHHHH
Q psy7979 115 FIRLSSQATITHLKKFVALKLLDEKSKYKEIDILCNDELLGKDHTLKFVY 164 (186)
Q Consensus 115 ylrcs~~~tV~hLkKfL~~Kl~~~l~~~~~veIlc~~~~L~~~~TL~~I~ 164 (186)
.+.++...||..||.-|+.+. +++.. +.-++++|..|.++.||.+.-
T Consensus 14 ~~~v~~~~tV~~lK~~i~~~~--gi~~~-~qrL~~~gk~L~d~~tL~~~~ 60 (76)
T 3b1l_X 14 PVEVDSDTSILQLKEVVAKQQ--GVPAD-QLRVIFAGKELPNHLTVQNCD 60 (76)
Confidence 467888999999999999999 78754 555788899999999998753
No 69
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=91.05 E-value=0.33 Score=36.57 Aligned_cols=61 Identities=13% Similarity=0.010 Sum_probs=46.2
Q ss_pred cEEEecccccHHHHHHHHHHHhhcCCCCCceEEEEeCCEecCCCCcHHHHHHHhccCCCCCeeEEEee
Q psy7979 114 RFIRLSSQATITHLKKFVALKLLDEKSKYKEIDILCNDELLGKDHTLKFVYITRWRFRTPPLKLQYRP 181 (186)
Q Consensus 114 ~ylrcs~~~tV~hLkKfL~~Kl~~~l~~~~~veIlc~~~~L~~~~TL~~I~~~~W~~~~~Pm~L~Yr~ 181 (186)
-.+.++...||..||+-|+.+. ++|.. +.-++++|..|.++.||.+.-+. ...-+.|..|.
T Consensus 94 ~~~~v~~~~tV~~lK~~i~~~~--gip~~-~q~L~~~G~~L~d~~tL~~y~i~----~g~~l~l~~rl 154 (159)
T 3rt3_B 94 STYEVRLTQTVAHLKQQVSGLE--GVQDD-LFWLTFEGKPLEDQLPLGEYGLK----PLSTVFMNLRL 154 (159)
T ss_dssp EEEEECTTSBHHHHHHHHHHHH--TCCGG-GEEEEETTEECCTTSBGGGGTCC----TTCEEEEEECC
T ss_pred EEEEeCCCCCHHHHHHHHHHHH--CCCHH-HEEEEECCeecCCCCCHHHcCCC----CCCEEEEEEec
Confidence 3578899999999999999999 88855 45578899999999999864321 13455555543
No 70
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=90.36 E-value=0.4 Score=35.35 Aligned_cols=46 Identities=15% Similarity=0.109 Sum_probs=39.7
Q ss_pred EEEecccccHHHHHHHHHHHhhcCCCCCceEEEEeCCEecCCCCcHHHH
Q psy7979 115 FIRLSSQATITHLKKFVALKLLDEKSKYKEIDILCNDELLGKDHTLKFV 163 (186)
Q Consensus 115 ylrcs~~~tV~hLkKfL~~Kl~~~l~~~~~veIlc~~~~L~~~~TL~~I 163 (186)
-+.++...||..||+-|+.+. ++|.. +.-++++|..|.++.||.+.
T Consensus 14 ~~~v~~~~tv~~lK~~i~~~~--gip~~-~q~L~~~g~~L~d~~tL~~~ 59 (152)
T 3b08_A 14 TLEVEPSDTIENVKAKIQDKE--GIPPD-QQRLIFAGKQLEDGRTLSDY 59 (152)
T ss_dssp EEECCTTCBHHHHHHHHHHHH--CCCGG-GEEEEETTEECCTTSBTGGG
T ss_pred EEEECCCCCHHHHHHHHHHHH--CcChH-HeEEEECCeECcCcccHHHh
Confidence 478899999999999999999 88855 55688899999999999764
No 71
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=90.35 E-value=0.41 Score=34.78 Aligned_cols=45 Identities=18% Similarity=0.225 Sum_probs=39.7
Q ss_pred EEEecccccHHHHHHHHHHHhhcCCCCCceEEEEeCCEecCCCCcHHH
Q psy7979 115 FIRLSSQATITHLKKFVALKLLDEKSKYKEIDILCNDELLGKDHTLKF 162 (186)
Q Consensus 115 ylrcs~~~tV~hLkKfL~~Kl~~~l~~~~~veIlc~~~~L~~~~TL~~ 162 (186)
-+.+.+..||.+||.-|..++ ++|...+= +.+++..+.++-||.+
T Consensus 40 ~l~V~ps~TV~~LK~~I~~k~--Gipp~~QR-li~ggkll~D~~TL~~ 84 (105)
T 4dbg_A 40 WLTVRPDMTVASLKDMVFLDY--GFPPVLQQ-WVIGQRLARDQETLHS 84 (105)
T ss_dssp EEEECTTCBHHHHHHHHHHHH--CCCGGGEE-EEETTEEECTTCBTGG
T ss_pred EEEECCcChHHHHHHHHHHHh--CCCHHHEE-EeccCeEccCcCcHHH
Confidence 567789999999999999999 99977664 8899999999999975
No 72
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=90.30 E-value=0.41 Score=35.29 Aligned_cols=61 Identities=18% Similarity=0.160 Sum_probs=46.6
Q ss_pred cEEEecccccHHHHHHHHHHHhhcCCCCCceEEEEeCCEecCCCCcHHHHHHHhccCCCCCeeEEEee
Q psy7979 114 RFIRLSSQATITHLKKFVALKLLDEKSKYKEIDILCNDELLGKDHTLKFVYITRWRFRTPPLKLQYRP 181 (186)
Q Consensus 114 ~ylrcs~~~tV~hLkKfL~~Kl~~~l~~~~~veIlc~~~~L~~~~TL~~I~~~~W~~~~~Pm~L~Yr~ 181 (186)
-.+.++...||..||+-|+.+. ++|.. +.-++++|..|.++.||.+.-+ . ....+.|..|.
T Consensus 89 ~~~~v~~~~tv~~lK~~i~~~~--gi~~~-~qrL~~~g~~L~d~~tL~~~~i---~-~~~~i~l~~r~ 149 (152)
T 3b08_A 89 ITLEVEPSDTIENVKAKIQDKE--GIPPD-QQRLIFAGKQLEDGRTLSDYNI---Q-KESTLHLVLRL 149 (152)
T ss_dssp EEEEECTTCBHHHHHHHHHHHH--CCCGG-GEEEEETTEECCTTSBTGGGTC---C-TTCEEEEEECC
T ss_pred EEEEeCCCCcHHHHHHHHHHHh--CcChh-hEEEEECCEECCCCCCHHHcCC---C-CCCEEEEEEec
Confidence 4577889999999999999999 88854 5568889999999999976432 1 13456666554
No 73
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=90.07 E-value=0.42 Score=36.61 Aligned_cols=46 Identities=15% Similarity=0.133 Sum_probs=40.1
Q ss_pred EEEecccccHHHHHHHHHHHhhcCCCCCceEEEEeCCEecCCCCcHHHH
Q psy7979 115 FIRLSSQATITHLKKFVALKLLDEKSKYKEIDILCNDELLGKDHTLKFV 163 (186)
Q Consensus 115 ylrcs~~~tV~hLkKfL~~Kl~~~l~~~~~veIlc~~~~L~~~~TL~~I 163 (186)
.+.++...||..||+-|..+. +++...+ -++++|..|.++.||.+.
T Consensus 34 ~l~v~~~~tV~~lK~~I~~~~--gip~~~Q-rL~~~g~~L~d~~tL~~~ 79 (172)
T 3u30_A 34 TLEVEPSDTIENVKAKIQDKE--GIPPDQQ-RLIFAGKQLEDGRTLSDY 79 (172)
T ss_dssp EEEECTTCBHHHHHHHHHHHH--CCCGGGE-EEEETTEECCTTCBTGGG
T ss_pred EEEECCCCcHHHHHHHHHHHH--CcChHHE-EEEECCccccccCCHhHc
Confidence 578999999999999999999 8886644 577899999999999874
No 74
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=89.91 E-value=0.38 Score=36.22 Aligned_cols=48 Identities=17% Similarity=0.141 Sum_probs=40.3
Q ss_pred EEEecccccHHHHHHHHHHHhhcCCCCCceEEEEe-CCEecCCCCcHHHHH
Q psy7979 115 FIRLSSQATITHLKKFVALKLLDEKSKYKEIDILC-NDELLGKDHTLKFVY 164 (186)
Q Consensus 115 ylrcs~~~tV~hLkKfL~~Kl~~~l~~~~~veIlc-~~~~L~~~~TL~~I~ 164 (186)
.+.++...||..||+-|..+. ++|...+-=+++ +|..|.++.||.+.-
T Consensus 16 ~l~v~~~~tV~~lK~~I~~~~--gip~~~QrL~~~~~g~~L~d~~tL~~y~ 64 (159)
T 3rt3_B 16 QVSLSSSMSVSELKAQITQKI--GVHAFQQRLAVHPSGVALQDRVPLASQG 64 (159)
T ss_dssp EEECCTTCCHHHHHHHHHHHH--CCCGGGEEEEEETTCCBCCTTSCGGGGT
T ss_pred EEEeCCCCcHHHHHHHHHHHh--CCCHHHEEEEEcCCCCCCCCCCCHHHcC
Confidence 578899999999999999999 888766654438 799999999998753
No 75
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=89.88 E-value=0.3 Score=34.96 Aligned_cols=45 Identities=18% Similarity=0.219 Sum_probs=38.6
Q ss_pred EEecc-cccHHHHHHHHHHHhhcCCCCCceEEEEeCCEecCCCCcHHHH
Q psy7979 116 IRLSS-QATITHLKKFVALKLLDEKSKYKEIDILCNDELLGKDHTLKFV 163 (186)
Q Consensus 116 lrcs~-~~tV~hLkKfL~~Kl~~~l~~~~~veIlc~~~~L~~~~TL~~I 163 (186)
+.++. ..||..||.-|..+. +++... .-++++|.+|.++.||.+.
T Consensus 45 l~v~~l~~TV~~LK~~I~~~~--gip~~~-QrL~~~Gk~L~D~~tL~~y 90 (111)
T 1we6_A 45 ITVQSLSENVGSLKEKIAGEI--QIPANK-QKLSGKAGFLKDNMSLAHY 90 (111)
T ss_dssp EEESCSSSBHHHHHHHHHHHT--TCCTTT-SEEECSSSBCCTTSBTTTT
T ss_pred EEecCCCCcHHHHHHHHHHHH--CCCHHH-eEEEECCEECCCCCcHHHC
Confidence 78887 999999999999999 888664 4477889999999999764
No 76
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=89.84 E-value=0.36 Score=38.47 Aligned_cols=47 Identities=15% Similarity=0.113 Sum_probs=40.3
Q ss_pred cEEEecccccHHHHHHHHHHHhhcCCCCCceEEEEeCCEecCCCCcHHHH
Q psy7979 114 RFIRLSSQATITHLKKFVALKLLDEKSKYKEIDILCNDELLGKDHTLKFV 163 (186)
Q Consensus 114 ~ylrcs~~~tV~hLkKfL~~Kl~~~l~~~~~veIlc~~~~L~~~~TL~~I 163 (186)
-.|.++...||..||.-|+.+. ++|...+ -++++|.+|.++.||.+.
T Consensus 118 ~~l~V~~s~TV~~LK~kI~~~~--gIp~~~Q-rLi~~Gk~L~D~~tL~dy 164 (189)
T 3q3f_A 118 ITLEVEPSDTIENVKAKIQDKE--GIPPDQQ-RLIFAGKQLEDGRTLSDY 164 (189)
T ss_dssp EEEEECTTCBHHHHHHHHHHHH--CCCGGGC-CEEETTEECCTTCBGGGG
T ss_pred EEEEeCCCCcHHHHHHHHHhcc--CCCHHHE-EEEECCEECCCCCCHHHC
Confidence 3578899999999999999999 8886544 477899999999999874
No 77
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=89.77 E-value=0.33 Score=34.55 Aligned_cols=45 Identities=20% Similarity=0.230 Sum_probs=36.7
Q ss_pred EEecccccHHHHHHHH-HHHhhcCCCCCceEEEEeCCEecCCCCcHHHH
Q psy7979 116 IRLSSQATITHLKKFV-ALKLLDEKSKYKEIDILCNDELLGKDHTLKFV 163 (186)
Q Consensus 116 lrcs~~~tV~hLkKfL-~~Kl~~~l~~~~~veIlc~~~~L~~~~TL~~I 163 (186)
+.|+...||..||.-| +.+- +++.. +.-++++|.+|.++.||.+.
T Consensus 36 v~v~~~~TV~~lK~~I~~~~~--gip~~-~QrLi~~Gk~L~D~~tL~dy 81 (98)
T 4a20_A 36 HDFSPSDTILQIKQHLISEEK--ASHIS-EIKLLLKGKVLHDNLFLSDL 81 (98)
T ss_dssp EEECTTCBHHHHHHHHHHTTS--CSCGG-GEEEEETTEEECTTCBGGGS
T ss_pred EecCCCChHHHHHHHHHHHhc--CCChh-hEEEEECCEECcCcCCHHHc
Confidence 3678999999999999 6665 67755 45588899999999999874
No 78
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=89.66 E-value=0.39 Score=33.74 Aligned_cols=43 Identities=9% Similarity=0.064 Sum_probs=37.1
Q ss_pred EEecccccHHHHHHHHHHHhhcCCCCCceEEEEeCCEecCCCCcHHH
Q psy7979 116 IRLSSQATITHLKKFVALKLLDEKSKYKEIDILCNDELLGKDHTLKF 162 (186)
Q Consensus 116 lrcs~~~tV~hLkKfL~~Kl~~~l~~~~~veIlc~~~~L~~~~TL~~ 162 (186)
|.++...||..||.-|+.+. +++...+- ++|+|.+|.++ ||.+
T Consensus 22 l~v~~~~TV~~lK~~I~~~t--gip~~~Qk-Li~~Gk~L~D~-tL~~ 64 (96)
T 1wgg_A 22 VELNTDEPPMVFKAQLFALT--GVQPARQK-VMVKGGTLKDD-DWGN 64 (96)
T ss_dssp EEEESSSCHHHHHHHHHHHT--CCCTTTSC-CEETTEECCSS-CCCS
T ss_pred EEECCCCcHHHHHHHHHHHH--CcCHHHeE-EEECCcCCCCC-CHHH
Confidence 78899999999999999998 88866544 66899999998 8865
No 79
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=88.67 E-value=0.49 Score=33.04 Aligned_cols=60 Identities=15% Similarity=0.147 Sum_probs=44.3
Q ss_pred CCceeEEEEeccCCCCccccccccEEEecccccHHHHHHHHHHHhhcCCCCCceEEEEeCCEecCCCCcHHHH
Q psy7979 91 DEQVNVYLECSVATTSSLKTLKKRFIRLSSQATITHLKKFVALKLLDEKSKYKEIDILCNDELLGKDHTLKFV 163 (186)
Q Consensus 91 de~vsl~LE~~~~~~~~l~~l~~~ylrcs~~~tV~hLkKfL~~Kl~~~l~~~~~veIlc~~~~L~~~~TL~~I 163 (186)
++.|.|.+... + ..--|.++...||..||.-|..+. +++...+- ++++|.+|. +.||.+.
T Consensus 15 ~~~~~i~Vk~~---g------~~~~i~v~~~~TV~~LK~~I~~~t--gip~~~Qr-L~~~Gk~Ld-d~tL~~~ 74 (95)
T 1v86_A 15 KELVDLKIIWN---K------TKHDVKVPLDSTGSELKQKIHSIT--GLPPAMQK-VMYKGLVPE-DKTLREI 74 (95)
T ss_dssp CCCEEEEEEET---T------EEEEEEECTTSBHHHHHHHHHHHH--CSCSTTCC-CBSSSBCCS-SSBHHHH
T ss_pred CceEEEEEEEC---C------EEEEEEECCCCcHHHHHHHHHHHH--CcCHHHeE-EEECCeeCC-cCcHHHC
Confidence 45677777532 1 122478999999999999999999 88866444 678898994 4598764
No 80
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=88.61 E-value=0.66 Score=34.46 Aligned_cols=47 Identities=23% Similarity=0.304 Sum_probs=40.6
Q ss_pred cEEEecccccHHHHHHHHHHHhhcCCCCCceEEEEeCCEecCCCCcHHHH
Q psy7979 114 RFIRLSSQATITHLKKFVALKLLDEKSKYKEIDILCNDELLGKDHTLKFV 163 (186)
Q Consensus 114 ~ylrcs~~~tV~hLkKfL~~Kl~~~l~~~~~veIlc~~~~L~~~~TL~~I 163 (186)
-++-+...-||..||+-|..+. ++|...+ -++++|..|.++-||.+-
T Consensus 14 I~ldve~sdTV~~lK~kI~~~~--giPp~qQ-rLI~~Gk~LeD~kTL~dy 60 (118)
T 4ajy_B 14 IFTDAKESSTVFELKRIVEGIL--KRPPDEQ-RLYKDDQLLDDGKTLGEC 60 (118)
T ss_dssp EEEEEETTSBHHHHHHHHHHHH--CCCGGGE-EEEETTEECCTTSBTTTT
T ss_pred EEEEcCCCChHHHHHHHHHHHH--CCCHHHe-EEEeCCeECCCcCCHHHc
Confidence 4778889999999999999999 8987655 466899999999999874
No 81
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=87.62 E-value=0.11 Score=38.52 Aligned_cols=47 Identities=17% Similarity=0.113 Sum_probs=0.0
Q ss_pred EEEecccccHHHHHHHHHHHhhcCCCCCceEEEEeCCEecCCCCcHHHHH
Q psy7979 115 FIRLSSQATITHLKKFVALKLLDEKSKYKEIDILCNDELLGKDHTLKFVY 164 (186)
Q Consensus 115 ylrcs~~~tV~hLkKfL~~Kl~~~l~~~~~veIlc~~~~L~~~~TL~~I~ 164 (186)
.+.++...||..||.-|..+. ++|.. +.-++++|..|.++.||.+.-
T Consensus 14 ~l~v~~~~TV~~LK~~I~~~~--gip~~-~QrLi~~Gk~L~D~~tL~~~~ 60 (128)
T 3u5e_m 14 TLEVESSDTIDNVKSKIQDKE--GIPPD-QQRLIFAGKQLEDGRTLSDYN 60 (128)
T ss_dssp --------------------------------------------------
T ss_pred EEEeCCCCCHHHHHHHHHHHh--CcChH-HEEEEECCEECCCCCchhhhc
Confidence 467788999999999999998 88865 445778999999999998753
No 82
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=87.62 E-value=3.4 Score=28.92 Aligned_cols=68 Identities=15% Similarity=0.129 Sum_probs=47.7
Q ss_pred CCCCCceeEEEEeccCCCCccccccccEEEecccccHHHHHHHHHHHhhcCCCCCceEEEEeC-CE----ecCCCCcHHH
Q psy7979 88 HRLDEQVNVYLECSVATTSSLKTLKKRFIRLSSQATITHLKKFVALKLLDEKSKYKEIDILCN-DE----LLGKDHTLKF 162 (186)
Q Consensus 88 ~~~de~vsl~LE~~~~~~~~l~~l~~~ylrcs~~~tV~hLkKfL~~Kl~~~l~~~~~veIlc~-~~----~L~~~~TL~~ 162 (186)
|.++..|+|.+-.. . ... ..-=++++...||..||.-|..+. ++|...+-=|+.+ |. .+.++.||.+
T Consensus 10 ~~~~~~v~l~It~s---~--~~~-~~~~~~v~~~~TV~~LK~kI~~~~--GiP~~~QrL~~~~~g~~~~~L~~D~~tL~~ 81 (95)
T 2kjr_A 10 HGKSDFIKVNVSNS---H--NDA-VAFEVKLAKDLTVAQLKTKLEILT--GGCAGTMKVQVFKGDTCVSTMDNNDAQLGY 81 (95)
T ss_dssp CCCCCEEEEEEEES---S--CSC-EEEEEEEETTCBHHHHHHHHHHHH--CSCTTTEEEEEEETTEEEEECCCTTSBHHH
T ss_pred cCCCCeEEEEEEEC---C--CCc-eEEEEEeCccCHHHHHHHHHHHHH--CcCHHHeEEEEecCCcccceeCCCCCCHhH
Confidence 45677889888543 1 110 122367899999999999999999 8998766645553 43 3588899976
Q ss_pred H
Q psy7979 163 V 163 (186)
Q Consensus 163 I 163 (186)
-
T Consensus 82 Y 82 (95)
T 2kjr_A 82 Y 82 (95)
T ss_dssp H
T ss_pred C
Confidence 3
No 83
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=87.01 E-value=2.3 Score=31.12 Aligned_cols=65 Identities=15% Similarity=0.111 Sum_probs=47.1
Q ss_pred CCCceeEEEEeccCCCCccccccccEEEecccccHHHHHHHHHHHhhc----CCC-CCceEEEEeCCEecCCCCcHHH
Q psy7979 90 LDEQVNVYLECSVATTSSLKTLKKRFIRLSSQATITHLKKFVALKLLD----EKS-KYKEIDILCNDELLGKDHTLKF 162 (186)
Q Consensus 90 ~de~vsl~LE~~~~~~~~l~~l~~~ylrcs~~~tV~hLkKfL~~Kl~~----~l~-~~~~veIlc~~~~L~~~~TL~~ 162 (186)
+.+.|.|.+-.. . ...--+.++...||..||..|+....- +++ ...+.-+.|.|.+|.++.||.+
T Consensus 13 ~~~~m~I~vKtl-------~-G~t~~lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLIy~GK~LeD~~TL~~ 82 (116)
T 1wgh_A 13 PADMINLRLILV-------S-GKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGA 82 (116)
T ss_dssp CSSSEEEEEECS-------S-SCEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEETTEEECSSCBTTT
T ss_pred CCCeEEEEEEeC-------C-CCEEEEEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEEECCcCCCCCCcHHH
Confidence 556788877433 1 133356788999999999999995311 332 3457778999999999999986
No 84
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=86.70 E-value=0.69 Score=35.37 Aligned_cols=49 Identities=14% Similarity=0.100 Sum_probs=40.7
Q ss_pred ccEEEecccccHHHHHHHHHHHhhcCCCCCceEEEEeCCEecCCCCcHHHHH
Q psy7979 113 KRFIRLSSQATITHLKKFVALKLLDEKSKYKEIDILCNDELLGKDHTLKFVY 164 (186)
Q Consensus 113 ~~ylrcs~~~tV~hLkKfL~~Kl~~~l~~~~~veIlc~~~~L~~~~TL~~I~ 164 (186)
.-.+.++...||..||+-|..+. ++|...+ .++++|..|.++.||.+..
T Consensus 108 ~~~l~v~~~~tV~~lK~~I~~~~--gip~~~q-~L~~~g~~L~D~~tL~~y~ 156 (172)
T 3u30_A 108 TITLEVEPSDTIENVKAKIQDKE--GIPPDQQ-RLIFAGKQLEDGRTLSDYN 156 (172)
T ss_dssp EEEEEECTTCBHHHHHHHHHHHH--CCCGGGC-CEEETTEECCTTSBSGGGT
T ss_pred ceeEEecCCCCHHHHHHHHHHHh--CCCceeE-EEEECCccCCCCCcHHHhC
Confidence 34678889999999999999999 8886544 4778999999999998743
No 85
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=85.98 E-value=1.8 Score=30.62 Aligned_cols=44 Identities=30% Similarity=0.358 Sum_probs=34.4
Q ss_pred cccHHHHHHHHHHHhhcCCCCCceEEEEeCCEecCCCCcHHHHH
Q psy7979 121 QATITHLKKFVALKLLDEKSKYKEIDILCNDELLGKDHTLKFVY 164 (186)
Q Consensus 121 ~~tV~hLkKfL~~Kl~~~l~~~~~veIlc~~~~L~~~~TL~~I~ 164 (186)
..||..||+.|+.+...+++.....-++++|..|.++.||.+.-
T Consensus 44 ~~TV~~LK~~i~~~~~~gip~~~~qrLi~~Gk~L~D~~tL~~y~ 87 (107)
T 1x1m_A 44 GYSISFLKQLIAGKLQESVPDPELIDLIYCGRKLKDDQTLDFYG 87 (107)
T ss_dssp CCBHHHHHHHHHHHCTTTCCCSSSEEEEETTEECCTTCBHHHHT
T ss_pred cCCHHHHHHHHHHHhccCCChhhcEEEEECCeECCCCCcHHHcC
Confidence 49999999999998722456443156788999999999998753
No 86
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=85.74 E-value=0.47 Score=32.90 Aligned_cols=29 Identities=28% Similarity=0.689 Sum_probs=23.8
Q ss_pred CCCCCcccccccccCCccccccchhHHhhhHhh
Q psy7979 11 KNTCPSCNIIIHQSHPLQYISFDRTMQDLVYKL 43 (186)
Q Consensus 11 ~~~CP~C~~~ih~s~Pl~~i~~D~tLQdIVyKL 43 (186)
+..||.|...+.. ..++++.+|+++|.++
T Consensus 57 ~~~CP~Cr~~~~~----~~l~~n~~l~~~i~~~ 85 (99)
T 2y43_A 57 KTQCPTCCVTVTE----PDLKNNRILDELVKSL 85 (99)
T ss_dssp CCBCTTTCCBCCG----GGCEECHHHHHHHHHH
T ss_pred CCCCCCCCCcCCh----hhCCcCHHHHHHHHHH
Confidence 4689999999953 3578899999998865
No 87
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=84.62 E-value=0.56 Score=30.88 Aligned_cols=30 Identities=13% Similarity=0.258 Sum_probs=23.4
Q ss_pred CCCCCCcccccccccCCccccccchhHHhhhHhh
Q psy7979 10 IKNTCPSCNIIIHQSHPLQYISFDRTMQDLVYKL 43 (186)
Q Consensus 10 ~~~~CP~C~~~ih~s~Pl~~i~~D~tLQdIVyKL 43 (186)
.+..||.|+..+... .+.++.+|+++|.++
T Consensus 42 ~~~~CP~C~~~~~~~----~l~~n~~l~~~i~~~ 71 (78)
T 1t1h_A 42 GHKTCPKSQETLLHA----GLTPNYVLKSLIALW 71 (78)
T ss_dssp TCCBCTTTCCBCSSC----CCEECTTTHHHHHHH
T ss_pred CcCCCCCCcCCCChh----hCccCHHHHHHHHHH
Confidence 367899999998532 578899999888654
No 88
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=84.47 E-value=3.4 Score=27.76 Aligned_cols=49 Identities=12% Similarity=0.025 Sum_probs=42.7
Q ss_pred ccEEEecccccHHHHHHHHHHHhhcCCCCCceEEEEeCCEecCCCCcHHHHH
Q psy7979 113 KRFIRLSSQATITHLKKFVALKLLDEKSKYKEIDILCNDELLGKDHTLKFVY 164 (186)
Q Consensus 113 ~~ylrcs~~~tV~hLkKfL~~Kl~~~l~~~~~veIlc~~~~L~~~~TL~~I~ 164 (186)
.-++++....++..|++..+.|. +++.. ++-+++.|+.|.++.|..+.-
T Consensus 20 ~i~~~i~~~t~l~kl~~~y~~~~--gi~~~-~~rf~fdG~~l~~~~Tp~~l~ 68 (79)
T 3a4r_A 20 MLEISLSPDSPLKVLMSHYEEAM--GLSGH-KLSFFFDGTKLSGKELPADLG 68 (79)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH--TCTTC-CCEEEETTEECCSCCCHHHHT
T ss_pred EEEEEECCCChHHHHHHHHHHHh--CCCcc-cEEEEECCEEcCCCCCHHHcC
Confidence 34888999999999999999999 77754 788999999999999998763
No 89
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=84.38 E-value=0.19 Score=38.66 Aligned_cols=47 Identities=17% Similarity=0.113 Sum_probs=0.0
Q ss_pred EEEecccccHHHHHHHHHHHhhcCCCCCceEEEEeCCEecCCCCcHHHHH
Q psy7979 115 FIRLSSQATITHLKKFVALKLLDEKSKYKEIDILCNDELLGKDHTLKFVY 164 (186)
Q Consensus 115 ylrcs~~~tV~hLkKfL~~Kl~~~l~~~~~veIlc~~~~L~~~~TL~~I~ 164 (186)
.|.++...||..||.-|+.+. ++|.. +.-++++|..|.++.||.+.-
T Consensus 14 ~l~V~~~~TV~~LK~~I~~~~--gip~~-~QrLi~~Gk~L~D~~tL~dyg 60 (152)
T 3u5c_f 14 TLEVESSDTIDNVKSKIQDKE--GIPPD-QQRLIFAGKQLEDGRTLSDYN 60 (152)
T ss_dssp --------------------------------------------------
T ss_pred EEEECCCCCHHHHHHHHHHHh--CCCHH-HEEEEECCEEccccCcHHHcC
Confidence 467889999999999999999 88865 445778999999999998753
No 90
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=81.86 E-value=0.73 Score=31.75 Aligned_cols=43 Identities=16% Similarity=0.163 Sum_probs=35.7
Q ss_pred EEEecccccHHHHHHHHHHHhhcCCCCCceEEEEeCCEecCCC-CcHHHH
Q psy7979 115 FIRLSSQATITHLKKFVALKLLDEKSKYKEIDILCNDELLGKD-HTLKFV 163 (186)
Q Consensus 115 ylrcs~~~tV~hLkKfL~~Kl~~~l~~~~~veIlc~~~~L~~~-~TL~~I 163 (186)
.+.++...||..||+-|..+. ..+.-++++|..|.++ .||.+.
T Consensus 21 ~~~v~~~~TV~~LK~~i~~~~------~~~qrLi~~Gk~L~D~~~tL~~y 64 (95)
T 1wia_A 21 LAVARPEDTVGTLKSKYFPGQ------ESQMKLIYQGRLLQDPARTLSSL 64 (95)
T ss_dssp EEEECSSSBHHHHHHHHSSST------TTTCEEEETTEECCCSSCBTTTT
T ss_pred EEEECCCCcHHHHHHHHHhhC------cCcEEEEECCEEccCCcCCHHHc
Confidence 578899999999999998764 3455678899999999 999864
No 91
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=81.81 E-value=1.6 Score=37.24 Aligned_cols=46 Identities=15% Similarity=0.109 Sum_probs=39.7
Q ss_pred EEEecccccHHHHHHHHHHHhhcCCCCCceEEEEeCCEecCCCCcHHHH
Q psy7979 115 FIRLSSQATITHLKKFVALKLLDEKSKYKEIDILCNDELLGKDHTLKFV 163 (186)
Q Consensus 115 ylrcs~~~tV~hLkKfL~~Kl~~~l~~~~~veIlc~~~~L~~~~TL~~I 163 (186)
-+.++...||..||.-|+.+. +++.. +.-++++|.+|.++.||.+.
T Consensus 247 ~leV~~s~TV~dLK~kI~~~~--GIp~~-~QRLi~~Gk~L~D~~TLsdy 292 (307)
T 3ai5_A 247 TLEVEPSDTIENVKAKIQDKE--GIPPD-QQRLIFAGKQLEDGRTLSDY 292 (307)
T ss_dssp EEEECTTCBHHHHHHHHHHHH--CCCGG-GCEEEETTEECCTTSBTGGG
T ss_pred EEEECCCCcHHHHHHHHHHHH--CcChH-HEEEEeCCeecCCCCCHHHc
Confidence 578899999999999999999 88866 44577889999999999764
No 92
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=81.43 E-value=0.85 Score=31.47 Aligned_cols=45 Identities=18% Similarity=0.164 Sum_probs=37.8
Q ss_pred EEecccccHHHHHHHHHHHhhcCCCCCceEEEEeC------CEecCCCCcHHH
Q psy7979 116 IRLSSQATITHLKKFVALKLLDEKSKYKEIDILCN------DELLGKDHTLKF 162 (186)
Q Consensus 116 lrcs~~~tV~hLkKfL~~Kl~~~l~~~~~veIlc~------~~~L~~~~TL~~ 162 (186)
+|.+...||..||.-|..+. ++|...+-=|+++ |..|.++.||.+
T Consensus 19 ~r~~~s~TI~~lK~ki~~~~--Gip~~~QrLi~~~~~~~~~g~~l~d~~tL~~ 69 (86)
T 4b6w_A 19 KRYGLAQTIESIKENVFTHF--ATPPEYMQLQLIDDRGITIEKNMANDKQLGY 69 (86)
T ss_dssp EEEETTSBHHHHHHHHHTTS--CCCGGGEEEEEECTTSCEEESSCCTTSBGGG
T ss_pred EEcCccCcHHHHHHHHHHHH--CCCHHHEEEEEecCCCCceeeEcCCCCCHHH
Confidence 67899999999999999999 9998877666653 567899999865
No 93
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=79.50 E-value=0.91 Score=29.52 Aligned_cols=22 Identities=50% Similarity=0.975 Sum_probs=18.8
Q ss_pred CCCCCcccccccccCCcccccc
Q psy7979 11 KNTCPSCNIIIHQSHPLQYISF 32 (186)
Q Consensus 11 ~~~CP~C~~~ih~s~Pl~~i~~ 32 (186)
+..||.|...+...+|+.+++.
T Consensus 50 ~~~CP~Cr~~~~~~~~~~~~~~ 71 (72)
T 2djb_A 50 SNRCPKCNIVVHQTQPLSGPSS 71 (72)
T ss_dssp CSSCTTTCCCCCSSCSCCCCSC
T ss_pred CCcCCCcCcccCcccccccCCC
Confidence 5789999999999898887764
No 94
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=79.37 E-value=0.97 Score=32.63 Aligned_cols=48 Identities=17% Similarity=0.135 Sum_probs=37.0
Q ss_pred EEEecccccHHHHHHHHHHHhhcCCCCC--------------ceEEEEeCCEecC-CCCcHHHHH
Q psy7979 115 FIRLSSQATITHLKKFVALKLLDEKSKY--------------KEIDILCNDELLG-KDHTLKFVY 164 (186)
Q Consensus 115 ylrcs~~~tV~hLkKfL~~Kl~~~l~~~--------------~~veIlc~~~~L~-~~~TL~~I~ 164 (186)
-|.++..+||..||+-|..+. +++.. .+.-+.++|..|. ++-||.+.-
T Consensus 21 ~v~V~~~~TV~dLK~~I~~~~--~i~~~~q~g~~~isw~~~w~q~~Li~~Gk~L~dD~~tL~dyg 83 (105)
T 1v2y_A 21 PVVVVQNATVLDLKKAIQRYV--QLKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLRDYG 83 (105)
T ss_dssp EEEECTTCBHHHHHHHHHHHH--HHHHHHTTCCCCCCHHHHHTTEEEESSSCEECCSSSBHHHHT
T ss_pred EEEECCCChHHHHHHHHHHHh--CCCcccccCcceeeeeecceeEEEEeCCcCccCCcCCHHHcC
Confidence 377889999999999999999 55532 2345668999986 569998743
No 95
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=78.59 E-value=0.99 Score=33.56 Aligned_cols=51 Identities=14% Similarity=0.129 Sum_probs=39.6
Q ss_pred ccEEEecccccHHHHHHHHHHHhhc----CCC-CCceEEEEeCCEecCCCCcHHHH
Q psy7979 113 KRFIRLSSQATITHLKKFVALKLLD----EKS-KYKEIDILCNDELLGKDHTLKFV 163 (186)
Q Consensus 113 ~~ylrcs~~~tV~hLkKfL~~Kl~~----~l~-~~~~veIlc~~~~L~~~~TL~~I 163 (186)
.--+.++...||..||.-|+..... ++| ...++-+.|.|.+|.++.||.+-
T Consensus 29 ~~~lev~~s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLIy~GK~LeD~~TL~~y 84 (125)
T 2gow_A 29 TKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGAL 84 (125)
T ss_dssp EEEEEECTTSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEESSSSEEESSCBTGGG
T ss_pred EEEEEeCCccHHHHHHHHHHHHCCcccccCCCCChHHEEEEECCcCCCCCCcHHHc
Confidence 3457788999999999999984311 444 34677789999999999999863
No 96
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=78.26 E-value=4.5 Score=28.06 Aligned_cols=61 Identities=15% Similarity=0.172 Sum_probs=50.3
Q ss_pred CceeEEEEeccCCCCccccccccEEEecccccHHHHHHHHHHHhhcCCCCCceEEEEeCCEecCCCCcHHH
Q psy7979 92 EQVNVYLECSVATTSSLKTLKKRFIRLSSQATITHLKKFVALKLLDEKSKYKEIDILCNDELLGKDHTLKF 162 (186)
Q Consensus 92 e~vsl~LE~~~~~~~~l~~l~~~ylrcs~~~tV~hLkKfL~~Kl~~~l~~~~~veIlc~~~~L~~~~TL~~ 162 (186)
..|.+.|.... + ..=+++++..+||.-|=+--+.+- +++....|-+++.|..|.++.|+.+
T Consensus 8 ~~~~~~~~~~~--~------~dl~f~I~~~t~v~kLi~ayc~~~--~I~~~~~IrllFDGdRLdp~~tp~D 68 (82)
T 3goe_A 8 KLITLLLRSSK--S------EDLRLSIPVDFTVKDLIKRYCTEV--KISFHERIRLEFEGEWLDPNDQVQS 68 (82)
T ss_dssp CEEEEEEEESS--S------CCEEEEEETTSBHHHHHHHHHHHH--TCCCCTTCEEEETTEECCTTSBGGG
T ss_pred HHHHHhhhccC--C------CCeEEEecCCCCHHHHHHHHHHHc--CCCcCceEEEEEcCcccCccCChhh
Confidence 45788776541 1 223788999999999999999999 8998889999999999999999875
No 97
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=77.71 E-value=3.3 Score=27.13 Aligned_cols=48 Identities=10% Similarity=0.124 Sum_probs=41.5
Q ss_pred ccEEEecccccHHHHHHHHHHHhhcCCCCCceEEEEeCCEecCCCCcHHHH
Q psy7979 113 KRFIRLSSQATITHLKKFVALKLLDEKSKYKEIDILCNDELLGKDHTLKFV 163 (186)
Q Consensus 113 ~~ylrcs~~~tV~hLkKfL~~Kl~~~l~~~~~veIlc~~~~L~~~~TL~~I 163 (186)
.-++++....++..|....+.|. +++. .++-++++|+.|.++.|..+.
T Consensus 13 ~v~~~v~~~t~l~kl~~~y~~~~--gi~~-~~~rf~fdG~~l~~~~Tp~~l 60 (72)
T 1wm3_A 13 VVQFKIKRHTPLSKLMKAYCERQ--GLSM-RQIRFRFDGQPINETDTPAQL 60 (72)
T ss_dssp EEEEEECTTSCTHHHHHHHHHHH--TCCT-TTCEEEETTEECCTTCCTTTT
T ss_pred EEEEEECCCChHHHHHHHHHHHh--CCCc-ceEEEEECCEEcCCCCCHHHc
Confidence 34888999999999999999999 7775 577899999999999998754
No 98
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=77.38 E-value=1.4 Score=29.79 Aligned_cols=31 Identities=16% Similarity=0.383 Sum_probs=23.5
Q ss_pred CCCCCcccccccccCCccccccchhHHhhhHhhc
Q psy7979 11 KNTCPSCNIIIHQSHPLQYISFDRTMQDLVYKLV 44 (186)
Q Consensus 11 ~~~CP~C~~~ih~s~Pl~~i~~D~tLQdIVyKLV 44 (186)
...||.|...+... ..+.++.+|+++|.++.
T Consensus 50 ~~~CP~Cr~~~~~~---~~~~~n~~l~~~i~~~~ 80 (92)
T 3ztg_A 50 EHTCPTCHQNDVSP---DALIANKFLRQAVNNFK 80 (92)
T ss_dssp TCCCTTTCCSSCCT---TSCEECHHHHHHHHHHH
T ss_pred CCcCcCCCCcCCCc---cccCcCHHHHHHHHHHH
Confidence 46899999987322 25789999999997663
No 99
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=76.60 E-value=0.78 Score=30.06 Aligned_cols=27 Identities=22% Similarity=0.549 Sum_probs=21.4
Q ss_pred CCCCCCcccccccccCCccccccchhHHhhh
Q psy7979 10 IKNTCPSCNIIIHQSHPLQYISFDRTMQDLV 40 (186)
Q Consensus 10 ~~~~CP~C~~~ih~s~Pl~~i~~D~tLQdIV 40 (186)
....||.|...+.. ..++++.+|++||
T Consensus 52 ~~~~CP~Cr~~~~~----~~l~~n~~l~~lv 78 (79)
T 2egp_A 52 GKSSCPVCGISYSF----EHLQANQHLANIV 78 (79)
T ss_dssp CCCCCSSSCCCCCS----SGGGTCSSSCCCC
T ss_pred CCCcCCCCCCcCCH----hhCCcCHHHHHhh
Confidence 46799999999842 3578888888876
No 100
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=76.07 E-value=5.2 Score=28.08 Aligned_cols=65 Identities=20% Similarity=0.149 Sum_probs=45.7
Q ss_pred CCCceeEEEEeccCCCCccccccccEEEecccccHHHHHHHHHHHhhcCCCCCceEEEEeC--CEe----cCCCCcHHH
Q psy7979 90 LDEQVNVYLECSVATTSSLKTLKKRFIRLSSQATITHLKKFVALKLLDEKSKYKEIDILCN--DEL----LGKDHTLKF 162 (186)
Q Consensus 90 ~de~vsl~LE~~~~~~~~l~~l~~~ylrcs~~~tV~hLkKfL~~Kl~~~l~~~~~veIlc~--~~~----L~~~~TL~~ 162 (186)
.+..|+|.+-.. +..+ ..-=++++...||..||.-|..+. ++|...+-=|+.+ |.. +.++.||.+
T Consensus 11 ~~~~v~l~It~s-----~~~~-~~~e~~v~~~~TV~~LK~kIe~~~--Gip~~~QrLi~~g~~g~~~~~L~~D~~tL~~ 81 (97)
T 2kj6_A 11 GDDSVHLHITHA-----NLKS-FSADARFSPQMSVEAVKEKLWKKC--GTSVNSMALELYDDSGSKVAVLSDDSRPLGF 81 (97)
T ss_dssp CCCCEEEEEEET-----TSSC-CCEEEEECTTCCHHHHHHHHHHHH--CCCTTSEEEEEECSSSCBCCCSSGGGSCHHH
T ss_pred CCceEEEEEEEC-----CCCc-eEEEEEeCCCChHHHHHHHHHHHH--CcCHHHeEEEEecCCCcccceecCCcCCHHH
Confidence 355688888542 1111 122378899999999999999999 9998877656664 132 578888876
No 101
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=75.59 E-value=4.1 Score=28.03 Aligned_cols=46 Identities=22% Similarity=0.047 Sum_probs=35.1
Q ss_pred EEEecccccHHHHHHHHHHHhhcCCCCCceEEEEeC--CEe----cCCCCcHHH
Q psy7979 115 FIRLSSQATITHLKKFVALKLLDEKSKYKEIDILCN--DEL----LGKDHTLKF 162 (186)
Q Consensus 115 ylrcs~~~tV~hLkKfL~~Kl~~~l~~~~~veIlc~--~~~----L~~~~TL~~ 162 (186)
=++++...||..||.-|..+. ++|...+-=++.+ |.+ +.++.||.+
T Consensus 22 ~~~v~~~~TV~~lK~ki~~~~--gip~~~qrL~~~~~~g~~~~~l~~D~~tL~~ 73 (95)
T 1v6e_A 22 EKRYSRSLTIAEFKCKLELVV--GSPASCMELELYGADDKFYSKLDQEDALLGS 73 (95)
T ss_dssp EEEECTTSBHHHHHHHHHHHT--CSCTTTCBCEEECSSSCEEEECCCSSSBTTS
T ss_pred EEEcCccCHHHHHHHHHHHHH--CCCHHHeEEEEeCCCCccccccCCCcCCHhH
Confidence 368899999999999999999 8997765534443 333 578888864
No 102
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=74.54 E-value=0.79 Score=30.19 Aligned_cols=27 Identities=19% Similarity=0.394 Sum_probs=21.1
Q ss_pred CCCCCCcccccccccCCccccccchhHHhhh
Q psy7979 10 IKNTCPSCNIIIHQSHPLQYISFDRTMQDLV 40 (186)
Q Consensus 10 ~~~~CP~C~~~ih~s~Pl~~i~~D~tLQdIV 40 (186)
....||.|...+.. ..++++..|++||
T Consensus 58 ~~~~CP~Cr~~~~~----~~~~~n~~l~~~v 84 (85)
T 2ecw_A 58 GKGNCPVCRVPYPF----GNLKPNLHVANIV 84 (85)
T ss_dssp SCBCCTTTCCCCCT----TCCEECSCCCSSC
T ss_pred CCCCCCCCCCcCCH----HhCCcCHHHHHhh
Confidence 36899999999853 2577888888876
No 103
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=74.03 E-value=4.9 Score=27.99 Aligned_cols=48 Identities=10% Similarity=0.124 Sum_probs=42.1
Q ss_pred ccEEEecccccHHHHHHHHHHHhhcCCCCCceEEEEeCCEecCCCCcHHHH
Q psy7979 113 KRFIRLSSQATITHLKKFVALKLLDEKSKYKEIDILCNDELLGKDHTLKFV 163 (186)
Q Consensus 113 ~~ylrcs~~~tV~hLkKfL~~Kl~~~l~~~~~veIlc~~~~L~~~~TL~~I 163 (186)
.-++++....++..|+...+.|. +++. .++-+++.|+.|.++.|+.+.
T Consensus 19 ~i~~~v~~~t~l~kl~~~y~~~~--gi~~-~~~rf~FdG~~l~~~~Tp~dl 66 (94)
T 2io1_B 19 VVQFKIKRHTPLSKLMKAYCERQ--GLSM-RQIRFRFDGQPINETDTPAQL 66 (94)
T ss_dssp EEEEEEETTSCTHHHHHHHHHHH--TCCG-GGEEEEETTEECCTTCCTTTT
T ss_pred EEEEEECCCCHHHHHHHHHHHHh--CCCc-ccEEEEECCEEcCCCCCHHHc
Confidence 34788999999999999999999 7775 578899999999999999765
No 104
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=73.39 E-value=0.78 Score=29.26 Aligned_cols=27 Identities=26% Similarity=0.548 Sum_probs=19.9
Q ss_pred CCCCCcccccccccCCccccccchhHHhh
Q psy7979 11 KNTCPSCNIIIHQSHPLQYISFDRTMQDL 39 (186)
Q Consensus 11 ~~~CP~C~~~ih~s~Pl~~i~~D~tLQdI 39 (186)
+..||.|...+. .....+..|..+++.
T Consensus 40 ~~~CP~Cr~~~~--~~~~~~~~d~~~~~~ 66 (68)
T 1chc_A 40 NPTCPLCKVPVE--SVVHTIESDSEFGDQ 66 (68)
T ss_dssp SCSTTTTCCCCC--CEECCCCSCCCCSSS
T ss_pred cCcCcCCChhhH--hhhhccccchHhHhh
Confidence 468999999984 445567788777654
No 105
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=72.68 E-value=0.99 Score=29.69 Aligned_cols=27 Identities=26% Similarity=0.596 Sum_probs=20.8
Q ss_pred CCCCCCcccccccccCCccccccchhHHhhh
Q psy7979 10 IKNTCPSCNIIIHQSHPLQYISFDRTMQDLV 40 (186)
Q Consensus 10 ~~~~CP~C~~~ih~s~Pl~~i~~D~tLQdIV 40 (186)
....||.|...+.. ..++++.+|++||
T Consensus 58 ~~~~CP~Cr~~~~~----~~~~~n~~l~~~v 84 (85)
T 2ecv_A 58 GESSCPVCRISYQP----ENIRPNRHVANIV 84 (85)
T ss_dssp SCCCCTTTCCSSCS----SSCCCSCCCCCCC
T ss_pred CCCcCCCCCCccCH----HhcCccHHHHHhh
Confidence 36899999999953 3577888888776
No 106
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=71.70 E-value=5.8 Score=27.53 Aligned_cols=48 Identities=10% Similarity=0.124 Sum_probs=41.9
Q ss_pred ccEEEecccccHHHHHHHHHHHhhcCCCCCceEEEEeCCEecCCCCcHHHH
Q psy7979 113 KRFIRLSSQATITHLKKFVALKLLDEKSKYKEIDILCNDELLGKDHTLKFV 163 (186)
Q Consensus 113 ~~ylrcs~~~tV~hLkKfL~~Kl~~~l~~~~~veIlc~~~~L~~~~TL~~I 163 (186)
.-++++....++..|+...+.|. +++. .++-+++.|+.|.++.|..+.
T Consensus 17 ~v~~~vk~~t~l~kl~~~y~~~~--gi~~-~~~rf~FdG~~l~~~~Tp~dl 64 (91)
T 2io0_B 17 VVQFKIKRHTPLSKLMKAYCERQ--GLSM-RQIRFRFDGQPINETDTPAQL 64 (91)
T ss_dssp EEEEEEETTSCTHHHHHHHHHHT--TCCS-TTEEEEETTEECCTTCCTTTT
T ss_pred EEEEEECCCChHHHHHHHHHHHh--CCCc-ccEEEEECCEEcCCCCCHHHc
Confidence 44889999999999999999999 7775 578899999999999998764
No 107
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=70.14 E-value=7.6 Score=28.04 Aligned_cols=63 Identities=16% Similarity=0.165 Sum_probs=49.9
Q ss_pred CCceeEEEEeccCCCCccccccccEEEecccccHHHHHHHHHHHhhcCCCCCceEEEEeCCEecCCCCcHHHHH
Q psy7979 91 DEQVNVYLECSVATTSSLKTLKKRFIRLSSQATITHLKKFVALKLLDEKSKYKEIDILCNDELLGKDHTLKFVY 164 (186)
Q Consensus 91 de~vsl~LE~~~~~~~~l~~l~~~ylrcs~~~tV~hLkKfL~~Kl~~~l~~~~~veIlc~~~~L~~~~TL~~I~ 164 (186)
.+.|.|.+-.. ++ ..-++++....++..|+...+.+. +++.. ++-+++.|..|.++.|..+.-
T Consensus 24 ~~~I~IkVk~~--~g------~~i~fkVk~~t~l~kL~~ay~ek~--gi~~~-~~rfiFdG~~L~~~~Tp~dl~ 86 (110)
T 2k8h_A 24 TALVAVKVVNA--DG------AEMFFRIKSRTALKKLIDTYCKKQ--GISRN-SVRFLFDGTPIDETKTPEELG 86 (110)
T ss_dssp CCCEEEEEEET--TS------CCEEEEECTTSSHHHHHHHHHHHH--TCCSS-SCEEESSSCBCCSSSHHHHHH
T ss_pred CCeEEEEEECC--CC------CEEEEEECCCChHHHHHHHHHHHh--CCCcc-cEEEEECCEEcCCCCCHHHcC
Confidence 34577777432 12 234889999999999999999999 77754 788999999999999998864
No 108
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=70.02 E-value=4.4 Score=30.19 Aligned_cols=66 Identities=18% Similarity=0.242 Sum_probs=46.2
Q ss_pred CCceeEEEEeccCCCCccccccccEEEecccccHHHHHHHHHHHhh---cCCCC-CceEEEEeCCEecCCCCcHHHH
Q psy7979 91 DEQVNVYLECSVATTSSLKTLKKRFIRLSSQATITHLKKFVALKLL---DEKSK-YKEIDILCNDELLGKDHTLKFV 163 (186)
Q Consensus 91 de~vsl~LE~~~~~~~~l~~l~~~ylrcs~~~tV~hLkKfL~~Kl~---~~l~~-~~~veIlc~~~~L~~~~TL~~I 163 (186)
+|++.|.+.-. .+.. ---+.++...||..||.-|+.... .++|. ..+.-+.|.|..|.++.||.+-
T Consensus 14 ~~~~~i~~kt~--~G~~-----i~~l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLIy~GK~LeD~~TLsdy 83 (126)
T 1se9_A 14 HNQLEIKFRLT--DGSD-----IGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLENSKTVKDY 83 (126)
T ss_dssp CCCEEEEEEET--TSCE-----EEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEETTEECCTTSBGGGG
T ss_pred cccEEEEEEEC--CCCE-----EEeeecCccCHHHHHHHHHHhhcccccccCCCChhhEEEEECCeECcCCCcHHHc
Confidence 46777777543 1111 112788999999999999977541 13443 2577789999999999999863
No 109
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=69.87 E-value=0.93 Score=36.22 Aligned_cols=44 Identities=9% Similarity=0.084 Sum_probs=0.0
Q ss_pred EEEecccccHHHHHHHHHHHhhcCCCCCceEEEEeCCEecCCCCcHH
Q psy7979 115 FIRLSSQATITHLKKFVALKLLDEKSKYKEIDILCNDELLGKDHTLK 161 (186)
Q Consensus 115 ylrcs~~~tV~hLkKfL~~Kl~~~l~~~~~veIlc~~~~L~~~~TL~ 161 (186)
.|.++...||..||..|..+. ++|...+ -++++|.+|.++.||.
T Consensus 14 tLeV~~sdTV~~LK~kI~~ke--GIP~~qQ-RLIf~GK~LeD~~TLs 57 (189)
T 2xzm_9 14 IYTLEQGTSVLDLKSQISQDM--GFEIDMM-TLVNNGFIAPNTELVT 57 (189)
T ss_dssp -----------------------------------------------
T ss_pred EEEECCcChHHHHHHHHHHHh--CcChhHE-EEEecCeECCCCCccc
Confidence 466778899999999999999 8886644 4677889999888886
No 110
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=68.09 E-value=9 Score=27.67 Aligned_cols=61 Identities=15% Similarity=0.099 Sum_probs=41.3
Q ss_pred ceeEEEEeccCCCCccccccccEEEecccccHHHHHHHHHHHhhcCCCCCceEEEEeC--CE----ecCCCCcHHH
Q psy7979 93 QVNVYLECSVATTSSLKTLKKRFIRLSSQATITHLKKFVALKLLDEKSKYKEIDILCN--DE----LLGKDHTLKF 162 (186)
Q Consensus 93 ~vsl~LE~~~~~~~~l~~l~~~ylrcs~~~tV~hLkKfL~~Kl~~~l~~~~~veIlc~--~~----~L~~~~TL~~ 162 (186)
.|+|.+-+. ... ..-=++++...||..||.-|..+. ++|...+-=++.+ |. .+.++.||.+
T Consensus 6 ~v~l~V~~~---~~~----~~~e~~v~~~~TV~~lK~ki~~~~--Gip~~~qrL~~~g~~~~~~~~l~~D~~tL~~ 72 (122)
T 1t0y_A 6 VYDLEITTN---ATD----FPMEKKYPAGMSLNDLKKKLELVV--GTTVDSMRIQLFDGDDQLKGELTDGAKSLKD 72 (122)
T ss_dssp EEEEEEEES---SCC----SCEEEEEETTSBHHHHHHHHHHHH--CCCTTTEEEEEECSSSSEEEECCCCSSBTTT
T ss_pred EEEEEEEEC---CCC----ccEEEEeCCCCcHHHHHHHHHHHh--CCCHHHeEEEEecCCCccccccCCCcCCHHH
Confidence 477777543 111 122368899999999999999999 8997765545543 22 2477778764
No 111
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=67.77 E-value=9.5 Score=26.35 Aligned_cols=62 Identities=10% Similarity=0.157 Sum_probs=48.0
Q ss_pred CCceeEEEEeccCCCCccccccccEEEecccccHHHHHHHHHHHhhcCCCCCceEEEEeCCEecCCCCcHHHH
Q psy7979 91 DEQVNVYLECSVATTSSLKTLKKRFIRLSSQATITHLKKFVALKLLDEKSKYKEIDILCNDELLGKDHTLKFV 163 (186)
Q Consensus 91 de~vsl~LE~~~~~~~~l~~l~~~ylrcs~~~tV~hLkKfL~~Kl~~~l~~~~~veIlc~~~~L~~~~TL~~I 163 (186)
.+.|.|.+-. .++ ..-++++....++..|....+.+. +++. .++-+++.|..|.++.|..+.
T Consensus 15 ~~~i~ikV~~--~~g------~~i~~~v~~~t~l~kl~~~y~~~~--gi~~-~~~rf~fdG~~l~~~~Tp~dl 76 (93)
T 2d07_B 15 NDHINLKVAG--QDG------SVVQFKIKRHTPLSKLMKAYCERQ--GLSM-RQIRFRFDGQPINETDTPAQL 76 (93)
T ss_dssp CCEEEEEEEC--TTS------CEEEEEEETTSCHHHHHHHHHHHH--TCCG-GGEEEEETTEECCTTCCTTTT
T ss_pred CCeEEEEEEC--CCC------CEEEEEEccCCHHHHHHHHHHHHh--CCCc-cceEEEECCEEcCCCCCHHHc
Confidence 3457776632 122 234788989999999999999999 7764 478899999999999998764
No 112
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=66.71 E-value=9.3 Score=27.02 Aligned_cols=46 Identities=15% Similarity=0.122 Sum_probs=35.9
Q ss_pred EEecccccHHHHHHHHHHHhhcCCCCCceEEEEeCCEecCCCCcHHHH
Q psy7979 116 IRLSSQATITHLKKFVALKLLDEKSKYKEIDILCNDELLGKDHTLKFV 163 (186)
Q Consensus 116 lrcs~~~tV~hLkKfL~~Kl~~~l~~~~~veIlc~~~~L~~~~TL~~I 163 (186)
|.++...||..||.-|..+. ++|...+-=+++.+-.|.++.||.+.
T Consensus 23 v~v~~~~TV~~LK~~I~~~t--gIpp~~QkLi~~~~gkL~D~~tLs~~ 68 (100)
T 2dzm_A 23 VVLEDTCTVGEIKQILENEL--QIPVSKMLLKGWKTGDVEDSTVLKSL 68 (100)
T ss_dssp EEEETTSBHHHHHHHHHHHH--CCCTTTCCEECCSSSCCCTTSBHHHH
T ss_pred EEECCCCcHHHHHHHHHHHH--CCChhHeEEEccCCCCCCCcCCHHHc
Confidence 67789999999999999999 88877665343333338888898876
No 113
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=63.77 E-value=4.1 Score=35.53 Aligned_cols=48 Identities=17% Similarity=0.191 Sum_probs=38.2
Q ss_pred EEEecccccHHHHHHHHHHHhh-cCCCCCceEEEEeCCEecCCCCcHHHH
Q psy7979 115 FIRLSSQATITHLKKFVALKLL-DEKSKYKEIDILCNDELLGKDHTLKFV 163 (186)
Q Consensus 115 ylrcs~~~tV~hLkKfL~~Kl~-~~l~~~~~veIlc~~~~L~~~~TL~~I 163 (186)
.|.++...||..||+.|..+.+ .+++.. +.-++|+|.+|.++.||.+.
T Consensus 21 ~leV~~~~TV~~LK~~I~~~~~~~gip~~-~QrLiy~GK~L~D~~tL~dy 69 (368)
T 1oqy_A 21 KIRMEPDETVKVLKEKIEAEKGRDAFPVA-GQKLIYAGKILSDDVPIRDY 69 (368)
T ss_dssp EECCCTTCBHHHHHHHHHHHTCSSSCCST-EEEEESSSSEECSSSBTTTT
T ss_pred EEEeCCCChHHHHHHHHHHHhCcCCCChh-heEEEECCeecCCcCCHHHc
Confidence 4778899999999999999541 146644 66688899999999999864
No 114
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=62.35 E-value=2.1 Score=30.46 Aligned_cols=13 Identities=31% Similarity=0.820 Sum_probs=11.0
Q ss_pred CCCCCcccccccc
Q psy7979 11 KNTCPSCNIIIHQ 23 (186)
Q Consensus 11 ~~~CP~C~~~ih~ 23 (186)
...||+|+..+|.
T Consensus 47 g~~CPvCgs~l~~ 59 (112)
T 1l8d_A 47 KGKCPVCGRELTD 59 (112)
T ss_dssp SEECTTTCCEECH
T ss_pred CCCCCCCCCcCCH
Confidence 5579999999984
No 115
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=61.42 E-value=4.9 Score=27.51 Aligned_cols=46 Identities=15% Similarity=0.159 Sum_probs=34.3
Q ss_pred E-EecccccHHHHHHHHHHHhhcCCCCCceEEEE-eCCEecCCCCcHHH
Q psy7979 116 I-RLSSQATITHLKKFVALKLLDEKSKYKEIDIL-CNDELLGKDHTLKF 162 (186)
Q Consensus 116 l-rcs~~~tV~hLkKfL~~Kl~~~l~~~~~veIl-c~~~~L~~~~TL~~ 162 (186)
| .++...||..||.-|+.+.. +++...+-=++ +.|.+|.++.||.+
T Consensus 27 l~~v~~~~TV~~lK~~I~~~~~-~i~~~~QrL~~~~~Gk~L~D~~tL~~ 74 (88)
T 2dzj_A 27 LDKVEPHATIAEIKNLFTKTHP-QWYPARQSLRLDPKGKSLKDEDVLQK 74 (88)
T ss_dssp EEEECSSCBHHHHHHHHHHHCS-SSCTTTCCEESSTTSCCCCTTCBTTT
T ss_pred EeEcCCCCcHHHHHHHHHHHhc-CCChHHeEEEecCCCcCcCCCCCHHH
Confidence 6 88999999999999999531 67655433232 45889999989875
No 116
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=60.65 E-value=6.8 Score=27.08 Aligned_cols=30 Identities=23% Similarity=0.442 Sum_probs=22.1
Q ss_pred CCCCCcccccccccCCccccccchhHHhhhHhhc
Q psy7979 11 KNTCPSCNIIIHQSHPLQYISFDRTMQDLVYKLV 44 (186)
Q Consensus 11 ~~~CP~C~~~ih~s~Pl~~i~~D~tLQdIVyKLV 44 (186)
...||.|...+... .+..+..++++|.++.
T Consensus 58 ~~~CP~Cr~~~~~~----~~~~~~~l~~~~~~~~ 87 (112)
T 1jm7_A 58 PSQCPLCKNDITKR----SLQESTRFSQLVEELL 87 (112)
T ss_dssp SCCCTTTSCCCCTT----TCBCCCSSSHHHHHHH
T ss_pred CCCCcCCCCcCCHh----hcCccHHHHHHHHHHH
Confidence 35899999998532 4667777777777665
No 117
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=60.38 E-value=5.6 Score=28.21 Aligned_cols=28 Identities=18% Similarity=0.434 Sum_probs=22.3
Q ss_pred CCCCcccccccccCCccccccchhHHhhhHhh
Q psy7979 12 NTCPSCNIIIHQSHPLQYISFDRTMQDLVYKL 43 (186)
Q Consensus 12 ~~CP~C~~~ih~s~Pl~~i~~D~tLQdIVyKL 43 (186)
..||.|...+.. ..++++.+|+++|.++
T Consensus 56 ~~CP~Cr~~~~~----~~~~~n~~l~~l~~~~ 83 (117)
T 1jm7_B 56 TGCPVCYTPAWI----QDLKINRQLDSMIQLC 83 (117)
T ss_dssp TBCSSSCCBCSC----SSCCCCHHHHHHHHHH
T ss_pred CCCcCCCCcCcc----ccccccHHHHHHHHHH
Confidence 679999999842 3578899999998854
No 118
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=57.84 E-value=7.2 Score=27.77 Aligned_cols=62 Identities=10% Similarity=0.135 Sum_probs=48.4
Q ss_pred CCceeEEEEeccCCCCccccccccEEEecccccHHHHHHHHHHHhhcCCCCCceEEEEeCCEecCCCCcHHHH
Q psy7979 91 DEQVNVYLECSVATTSSLKTLKKRFIRLSSQATITHLKKFVALKLLDEKSKYKEIDILCNDELLGKDHTLKFV 163 (186)
Q Consensus 91 de~vsl~LE~~~~~~~~l~~l~~~ylrcs~~~tV~hLkKfL~~Kl~~~l~~~~~veIlc~~~~L~~~~TL~~I 163 (186)
.+.|.|.+-.. ++ ..-++++....++..|+...+.|. +++.. ++-+++.|..|.++.|..+.
T Consensus 22 ~~~I~IkVk~~--~g------~~i~~kVk~~t~l~kL~~~y~ek~--gi~~~-~~rf~FdG~~l~~~~Tp~dl 83 (104)
T 1wz0_A 22 NDHINLKVAGQ--DG------SVVQFKIKRHTPLSKLMKAYCERQ--GLSMR-QIRFRFDGQPINETDTPAQL 83 (104)
T ss_dssp SCCEEEEEECS--SS------CEEEEEECTTSCHHHHHHHHHHHH--TCCTT-TSCEESSSSBCCTTSCTTTT
T ss_pred CCeEEEEEECC--CC------CEEEEEEcCCChHHHHHHHHHHHh--CCCcc-eEEEEECCEEcCCCCCHHHc
Confidence 34677777422 12 234899999999999999999999 77754 77899999999999998764
No 119
>1x3a_A Synapse associated protein 1; BSD domain, homolog of the drosophila SAP47, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.240.1.1
Probab=56.40 E-value=7.2 Score=27.81 Aligned_cols=35 Identities=26% Similarity=0.447 Sum_probs=29.5
Q ss_pred ccccchhHHhhhHhhcccchhhHHHHHHHHHHHhC
Q psy7979 29 YISFDRTMQDLVYKLVPNLQANEMKREREFYRIRG 63 (186)
Q Consensus 29 ~i~~D~tLQdIVyKLVPgL~~~E~~rr~eFy~~~~ 63 (186)
-|..|..|+.+-++|||..-..|..=++=||+-+-
T Consensus 52 lL~~dp~L~~l~~~LVP~~v~e~~FW~rYFyrv~~ 86 (100)
T 1x3a_A 52 MLQEDELLSKMRFALVPKLVKEEVFWRNYFYRVSL 86 (100)
T ss_dssp HHHHCHHHHHHHHHTTTTTSCHHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHCCCCcCHHHHHHHHHHHHHH
Confidence 35679999999999999988888887888888653
No 120
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=55.68 E-value=6.5 Score=27.14 Aligned_cols=27 Identities=15% Similarity=0.374 Sum_probs=18.9
Q ss_pred CCCCcccccccccCCccccccchhHHhhhHh
Q psy7979 12 NTCPSCNIIIHQSHPLQYISFDRTMQDLVYK 42 (186)
Q Consensus 12 ~~CP~C~~~ih~s~Pl~~i~~D~tLQdIVyK 42 (186)
..||.|...+.. ..+...+.+++|+..
T Consensus 59 ~~CP~Cr~~~~~----~~l~~~~~~~~i~~~ 85 (100)
T 3lrq_A 59 AQCPHCRAPLQL----RELVNCRWAEEVTQQ 85 (100)
T ss_dssp SBCTTTCCBCCG----GGCEECTTHHHHHHH
T ss_pred CCCCCCCCcCCH----HHhHhhHHHHHHHHH
Confidence 689999999943 245666677766543
No 121
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=55.29 E-value=5.7 Score=24.89 Aligned_cols=17 Identities=24% Similarity=0.559 Sum_probs=12.6
Q ss_pred CCCCCCcccccccccCC
Q psy7979 10 IKNTCPSCNIIIHQSHP 26 (186)
Q Consensus 10 ~~~~CP~C~~~ih~s~P 26 (186)
.+..||.|+..+...+.
T Consensus 42 ~~~~CP~Cr~~~~~~~~ 58 (65)
T 1g25_A 42 GAGNCPECGTPLRKSNF 58 (65)
T ss_dssp TSSSCTTTCCCCSSCCC
T ss_pred CCCcCCCCCCccccccc
Confidence 35789999999965443
No 122
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=55.16 E-value=16 Score=26.06 Aligned_cols=61 Identities=13% Similarity=0.208 Sum_probs=48.2
Q ss_pred CCceeEEEEeccCCCCccccccccEEEecccccHHHHHHHHHHHhhcCCCCCceEEEEeCCEecCCCCcHHHH
Q psy7979 91 DEQVNVYLECSVATTSSLKTLKKRFIRLSSQATITHLKKFVALKLLDEKSKYKEIDILCNDELLGKDHTLKFV 163 (186)
Q Consensus 91 de~vsl~LE~~~~~~~~l~~l~~~ylrcs~~~tV~hLkKfL~~Kl~~~l~~~~~veIlc~~~~L~~~~TL~~I 163 (186)
.+.|.|.+-. + ...-++++....++.-|....+.|. +++. .++-++++|..|.++.|..+.
T Consensus 29 ~~~I~IkV~~---~------g~~i~fkIk~tt~l~kL~~ay~ek~--gi~~-~~~rF~FdG~rl~~~~Tp~dl 89 (106)
T 2eke_C 29 ETHINLKVSD---G------SSEIFFKIKKTTPLRRLMEAFAKRQ--GKEM-DSLRFLYDGIRIQADQTPEDL 89 (106)
T ss_dssp CSEEEEEEEC---S------SCEEEEEEETTSCTHHHHHHHHHHH--TCCG-GGEEEEETTEECCTTCCTTTT
T ss_pred CCeEEEEEec---C------CcEEEEEeCCCCHHHHHHHHHHHHh--CCCc-ccEEEEECCeEcCCCCCHHHc
Confidence 3457777632 1 2345888999999999999999999 7774 488899999999999998764
No 123
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=54.33 E-value=17 Score=26.48 Aligned_cols=61 Identities=11% Similarity=0.190 Sum_probs=47.9
Q ss_pred CceeEEEEeccCCCCccccccccEEEecccccHHHHHHHHHHHhhcCCCCCceEEEEeCCEecCCCCcHHHH
Q psy7979 92 EQVNVYLECSVATTSSLKTLKKRFIRLSSQATITHLKKFVALKLLDEKSKYKEIDILCNDELLGKDHTLKFV 163 (186)
Q Consensus 92 e~vsl~LE~~~~~~~~l~~l~~~ylrcs~~~tV~hLkKfL~~Kl~~~l~~~~~veIlc~~~~L~~~~TL~~I 163 (186)
+.|.|.+-. +++ ..-++++....++..|.+..+.+. +++ ...+-++++|+.|.++.|..++
T Consensus 39 ~~I~LKV~~--qdg------~ev~fkIk~tt~L~KLm~aY~er~--Gl~-~~~irFlFDG~rI~~~~TP~dL 99 (115)
T 3kyd_D 39 EYIKLKVIG--QDS------SEIHFKVKMTTHLKKLKESYCQRQ--GVP-MNSLRFLFEGQRIADNHTPKEL 99 (115)
T ss_dssp CEEEEEEEC--TTS------CEEEEEEETTSCTHHHHHHHHHHH--TCC-TTSEEEEETTEECCTTCCTTTT
T ss_pred CeEEEEEEc--CCC------CEEEEEEccCChHHHHHHHHHHHh--CCC-hhhEEEEECCeECCCCCCHHHc
Confidence 467777732 222 223889999999999999999999 776 4589999999999999998754
No 124
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=53.46 E-value=8 Score=27.07 Aligned_cols=29 Identities=7% Similarity=0.054 Sum_probs=22.1
Q ss_pred CCCCCcccccccccCCccccccchhHHhhhHhh
Q psy7979 11 KNTCPSCNIIIHQSHPLQYISFDRTMQDLVYKL 43 (186)
Q Consensus 11 ~~~CP~C~~~ih~s~Pl~~i~~D~tLQdIVyKL 43 (186)
+.+||.|+..+.. ..+.++.+|.++|...
T Consensus 63 ~~~cP~~~~~l~~----~~L~pn~~Lk~~I~~~ 91 (100)
T 2kre_A 63 SPTDPFNRQTLTE----SMLEPVPELKEQIQAW 91 (100)
T ss_dssp CSBCSSSCCBCCT----TSSEECHHHHHHHHHH
T ss_pred CCCCCCCCCCCCh----hhceECHHHHHHHHHH
Confidence 5789999998842 3678888888887654
No 125
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=53.25 E-value=8.1 Score=26.04 Aligned_cols=29 Identities=7% Similarity=0.090 Sum_probs=22.7
Q ss_pred CCCCCcccccccccCCccccccchhHHhhhHhh
Q psy7979 11 KNTCPSCNIIIHQSHPLQYISFDRTMQDLVYKL 43 (186)
Q Consensus 11 ~~~CP~C~~~ih~s~Pl~~i~~D~tLQdIVyKL 43 (186)
+.+||.|+..+.. ..+.++.+|..+|...
T Consensus 48 ~~~cP~~~~~l~~----~~l~pn~~L~~~i~~~ 76 (85)
T 2kr4_A 48 SPTDPFNRQMLTE----SMLEPVPELKEQIQAW 76 (85)
T ss_dssp CSBCTTTCCBCCG----GGCEECHHHHHHHHHH
T ss_pred CCCCCCCcCCCCh----HhcchHHHHHHHHHHH
Confidence 4689999988842 3678899998888765
No 126
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=53.03 E-value=25 Score=24.25 Aligned_cols=60 Identities=13% Similarity=0.202 Sum_probs=43.2
Q ss_pred cEEEecccccHHHHHHHHHHHhhcCCCCCceEEEEeCCE-----ecCCCCcHHHHHHHhccC-CCCCeeEEEe
Q psy7979 114 RFIRLSSQATITHLKKFVALKLLDEKSKYKEIDILCNDE-----LLGKDHTLKFVYITRWRF-RTPPLKLQYR 180 (186)
Q Consensus 114 ~ylrcs~~~tV~hLkKfL~~Kl~~~l~~~~~veIlc~~~-----~L~~~~TL~~I~~~~W~~-~~~Pm~L~Yr 180 (186)
--||+|..++...|.--|+.|| .++ ..++.+.|.++ ++..+-.|+.+ |.+ +++-|.|+.+
T Consensus 16 vairvp~~~~y~~L~~~l~~kL--~l~-~~~~~LsYk~~~s~~~vi~~d~dl~~a----w~~~~n~~LtL~C~ 81 (83)
T 1oey_A 16 VVMKTQPGLPYSQVRDMVSKKL--ELR-LEHTKLSYRPRDSNELVPLSEDSMKDA----WGQVKNYCLTLWCE 81 (83)
T ss_dssp EEEEECTTCCHHHHHHHHHHHT--TCC-GGGCCEEECCTTCSSCEECCTTTHHHH----HTTCBTTEEEEEEC
T ss_pred EEEECCCCCCHHHHHHHHHHHh--CCC-cceeEEEeeCCCCCCeeccChHHHHHH----HHhccCCcEEEEEe
Confidence 3689999999999999999999 887 34677777642 35666666665 443 1344777654
No 127
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=53.00 E-value=7.3 Score=24.77 Aligned_cols=20 Identities=20% Similarity=0.541 Sum_probs=15.2
Q ss_pred CCccccCcCCCCCCcccccc
Q psy7979 2 LDKGDKKKIKNTCPSCNIII 21 (186)
Q Consensus 2 ~~~~~~~~~~~~CP~C~~~i 21 (186)
+|.|.+......||.|+..+
T Consensus 9 v~~gki~~~~~fCPkCG~~~ 28 (55)
T 2k4x_A 9 IADGKLVRKHRFCPRCGPGV 28 (55)
T ss_dssp CCCCCCCCSSCCCTTTTTTC
T ss_pred EcCCEEEEccccCcCCCCce
Confidence 35577777789999999754
No 128
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=52.76 E-value=8.7 Score=26.97 Aligned_cols=30 Identities=20% Similarity=0.361 Sum_probs=19.5
Q ss_pred CCCCCcccccccccCCccccccchhHHhhhHhh
Q psy7979 11 KNTCPSCNIIIHQSHPLQYISFDRTMQDLVYKL 43 (186)
Q Consensus 11 ~~~CP~C~~~ih~s~Pl~~i~~D~tLQdIVyKL 43 (186)
+..||.|...+..... ...++.++.++.++
T Consensus 58 ~~~CP~Cr~~~~~~~~---~~~~~~l~~~i~~l 87 (116)
T 1rmd_A 58 GSYCPSCRYPCFPTDL---ESPVKSFLNILNSL 87 (116)
T ss_dssp CSBCTTTCCBCCGGGC---BCCCHHHHHHHHHC
T ss_pred cCcCCCCCCCCCHhhc---cccHHHHHHHHHHh
Confidence 5689999999854332 23466666666544
No 129
>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A
Probab=52.24 E-value=27 Score=24.26 Aligned_cols=39 Identities=13% Similarity=0.059 Sum_probs=31.1
Q ss_pred EEEecccccHHHHHHHHHHHhhcCCCCCceEEEEeCCEecCCC
Q psy7979 115 FIRLSSQATITHLKKFVALKLLDEKSKYKEIDILCNDELLGKD 157 (186)
Q Consensus 115 ylrcs~~~tV~hLkKfL~~Kl~~~l~~~~~veIlc~~~~L~~~ 157 (186)
=||+|+.++...|+.=|+.|+ +++ ..+-+.++++..+..
T Consensus 25 AIrvP~di~~~~L~dKi~~RL--k~~--~~~l~~ykde~~g~~ 63 (85)
T 1ip9_A 25 ALMLKGDTTYKELRSKIAPRI--DTD--NFKLQTKLFDGSGEE 63 (85)
T ss_dssp EEEECSCCCHHHHHHHHHHHH--TSS--CEEEEECCSSSCCSC
T ss_pred EEECCCCCCHHHHHHHHHHHh--ccc--ceEEEEecCCCCCCc
Confidence 478899999999999999999 774 456567777766663
No 130
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=51.01 E-value=9 Score=26.70 Aligned_cols=29 Identities=10% Similarity=0.120 Sum_probs=20.5
Q ss_pred CCCCCcccccccccCCccccccchhHHhhhHhh
Q psy7979 11 KNTCPSCNIIIHQSHPLQYISFDRTMQDLVYKL 43 (186)
Q Consensus 11 ~~~CP~C~~~ih~s~Pl~~i~~D~tLQdIVyKL 43 (186)
+.+||.|+..+.. ..+.++.+|.++|...
T Consensus 57 ~~~cP~~~~~l~~----~~L~pn~~Lk~~I~~~ 85 (98)
T 1wgm_A 57 DQTDPFNRSPLTM----DQIRPNTELKEKIQRW 85 (98)
T ss_dssp SCBCTTTCSBCCT----TTSEECHHHHHHHHHH
T ss_pred CCCCCCCCCCCCh----hhceEcHHHHHHHHHH
Confidence 4689999988842 2567777777776543
No 131
>3vhs_A ATPase wrnip1; zinc finger, ubiquitin-binding domain, ubiquitin binding, ME binding protein; 1.90A {Homo sapiens}
Probab=50.86 E-value=2 Score=23.56 Aligned_cols=13 Identities=23% Similarity=0.795 Sum_probs=9.7
Q ss_pred CCCCccccccccc
Q psy7979 12 NTCPSCNIIIHQS 24 (186)
Q Consensus 12 ~~CP~C~~~ih~s 24 (186)
-.||+|.+.+.-.
T Consensus 7 vqcpvcqq~mpaa 19 (29)
T 3vhs_A 7 VQCPVCQQMMPAA 19 (29)
T ss_dssp EECTTTCCEEEGG
T ss_pred eeChHHHHhCcHH
Confidence 4799999887433
No 132
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=50.43 E-value=46 Score=23.30 Aligned_cols=62 Identities=10% Similarity=0.101 Sum_probs=47.6
Q ss_pred CceeEEEEeccCCCCccccccccEEEecccccHHHHHHHHHHHhhcCCCCCceEEEEeCCEecCCCCcHHHH
Q psy7979 92 EQVNVYLECSVATTSSLKTLKKRFIRLSSQATITHLKKFVALKLLDEKSKYKEIDILCNDELLGKDHTLKFV 163 (186)
Q Consensus 92 e~vsl~LE~~~~~~~~l~~l~~~ylrcs~~~tV~hLkKfL~~Kl~~~l~~~~~veIlc~~~~L~~~~TL~~I 163 (186)
+.|.|.+-.. ++. ..-++++....+..-|-+.-+.+. +++.. .+-+++.|+.|.++.|..++
T Consensus 24 ~~I~LkV~~~--dg~-----~~v~fkIk~~t~l~kLm~aY~~~~--g~~~~-~vrF~FDG~rI~~~~TP~dL 85 (97)
T 2jxx_A 24 QQLQLRVQGK--EKH-----QTLEVSLSRDSPLKTLMSHYEEAM--GLSGR-KLSFFFDGTKLSGRELPADL 85 (97)
T ss_dssp SEEEEEEEES--SSS-----CEEEEEEETTSCHHHHHHHHHHHT--TCSSS-CCEEEETTEECCSCSCHHHH
T ss_pred CeEEEEEEcC--CCC-----EEEEEEECCCChHHHHHHHHHHHH--CCCcc-cEEEEECCEEcCCCCCHHHc
Confidence 4577777322 121 134788888999999999999999 67644 79999999999999999876
No 133
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=47.42 E-value=5 Score=25.06 Aligned_cols=18 Identities=22% Similarity=0.519 Sum_probs=14.1
Q ss_pred CccccCcCCCCCCccccc
Q psy7979 3 DKGDKKKIKNTCPSCNII 20 (186)
Q Consensus 3 ~~~~~~~~~~~CP~C~~~ 20 (186)
|.|.++-..+.||.|+..
T Consensus 11 ~~~kv~~~~k~CP~CG~~ 28 (50)
T 3j20_Y 11 KDGKVIRKNKFCPRCGPG 28 (50)
T ss_dssp CSSCEECSSEECSSSCSS
T ss_pred ECCEEEEecccCCCCCCc
Confidence 556677778999999873
No 134
>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=45.20 E-value=3.8 Score=25.72 Aligned_cols=17 Identities=24% Similarity=0.632 Sum_probs=12.7
Q ss_pred CCCCCCcccccccccCC
Q psy7979 10 IKNTCPSCNIIIHQSHP 26 (186)
Q Consensus 10 ~~~~CP~C~~~ih~s~P 26 (186)
....||+|+++..-..|
T Consensus 11 ~~~~CPrCn~~f~~~~s 27 (49)
T 2e72_A 11 GRKICPRCNAQFRVTEA 27 (49)
T ss_dssp SCCCCTTTCCCCSSHHH
T ss_pred CceeCCcccccccchHH
Confidence 45899999998754444
No 135
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=44.56 E-value=8.8 Score=27.02 Aligned_cols=46 Identities=11% Similarity=0.191 Sum_probs=34.5
Q ss_pred EEEec-ccccHHHHHHHHHHHhhcCCCCCceEEEEeCCE-----------e----cCCCCcHHHH
Q psy7979 115 FIRLS-SQATITHLKKFVALKLLDEKSKYKEIDILCNDE-----------L----LGKDHTLKFV 163 (186)
Q Consensus 115 ylrcs-~~~tV~hLkKfL~~Kl~~~l~~~~~veIlc~~~-----------~----L~~~~TL~~I 163 (186)
-|.++ ...||..||.-|..++ +++...+- +.+.+. . +.++.||.+.
T Consensus 20 ~v~v~~~~~Tv~~LK~kI~~~~--gip~~~Qr-L~~~~~~~~~k~~~~~~~l~~~l~d~~tL~~~ 81 (107)
T 1wf9_A 20 RVSVDGPHITVSQLKTLIQDQL--QIPIHNQT-LSTNRNLLLAKSPSDFLAFTDMADPNLRISSL 81 (107)
T ss_dssp EEEECCTTSBHHHHHHHHHHHS--CCCTTTCC-CBSSGGGGTCCSHHHHTTCCSSCCTTCBGGGT
T ss_pred EEEECCCCCcHHHHHHHHHHHh--CcCcccCE-EEECCccccccCccccccccccCCCCCCHHHC
Confidence 36788 8999999999999999 88876554 334443 2 5778888764
No 136
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=44.06 E-value=11 Score=24.70 Aligned_cols=12 Identities=17% Similarity=0.357 Sum_probs=9.6
Q ss_pred CCCCCccccccc
Q psy7979 11 KNTCPSCNIIIH 22 (186)
Q Consensus 11 ~~~CP~C~~~ih 22 (186)
+..||+|...+.
T Consensus 49 ~~~CP~Cr~~~~ 60 (81)
T 2csy_A 49 TPRCYICDQPTG 60 (81)
T ss_dssp CSBCSSSCCBCC
T ss_pred CCcCCCcCcccc
Confidence 567999998883
No 137
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=43.13 E-value=11 Score=26.61 Aligned_cols=29 Identities=21% Similarity=0.328 Sum_probs=20.4
Q ss_pred CCCCcccccccccCCccccccchhHHhhhHhhc
Q psy7979 12 NTCPSCNIIIHQSHPLQYISFDRTMQDLVYKLV 44 (186)
Q Consensus 12 ~~CP~C~~~ih~s~Pl~~i~~D~tLQdIVyKLV 44 (186)
..||.|...+.. ..+.+|..++.+|.++.
T Consensus 54 ~~CP~Cr~~~~~----~~~~~~~~l~~~i~~l~ 82 (118)
T 3hct_A 54 HKCPVDNEILLE----NQLFPDNFAKREILSLM 82 (118)
T ss_dssp SBCTTTCCBCCG----GGCEECHHHHHHHHTSE
T ss_pred CCCCCCCCCcCH----HhcccCHHHHHHHccce
Confidence 389999998843 24567777777766654
No 138
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=43.05 E-value=17 Score=30.76 Aligned_cols=61 Identities=15% Similarity=0.164 Sum_probs=44.8
Q ss_pred CCceeEEEEeccCCCCccccccccEEEecccccHHHHHHHHHHHhhcCCCCCceEEEE---eCCEecCCCCcHHHH
Q psy7979 91 DEQVNVYLECSVATTSSLKTLKKRFIRLSSQATITHLKKFVALKLLDEKSKYKEIDIL---CNDELLGKDHTLKFV 163 (186)
Q Consensus 91 de~vsl~LE~~~~~~~~l~~l~~~ylrcs~~~tV~hLkKfL~~Kl~~~l~~~~~veIl---c~~~~L~~~~TL~~I 163 (186)
+++|+|.+-.. +. .-=+.+++..||..||.-|..+. ++|...|= ++ ++|..|.++.||...
T Consensus 3 ~~~i~i~Vk~~---g~------~~~v~v~~~~Tv~~lK~~I~~~t--gVpp~~Qk-Li~~k~~Gk~l~D~~~L~~~ 66 (320)
T 3shq_A 3 VKEVVVIVKWS---GK------EYPVDLTDQDTVEVLRHEIFRKT--QVRPERQK-LLNLKYKGKTAADNVKISAL 66 (320)
T ss_dssp -CEEEEEEEET---TE------EEEEEEETTSBHHHHHHHHHHHH--CCCGGGCE-ETTCBSSSSBCCTTSBTTSS
T ss_pred CceEEEEEEEC---CE------EEEEEECCCCcHHHHHHHHHHHH--CcCHHHeE-EeecccCCcccCccccHHHc
Confidence 35577777543 21 11267789999999999999999 89877654 55 688899999888653
No 139
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=42.03 E-value=12 Score=23.52 Aligned_cols=14 Identities=29% Similarity=0.757 Sum_probs=8.3
Q ss_pred CCCCcccccccccC
Q psy7979 12 NTCPSCNIIIHQSH 25 (186)
Q Consensus 12 ~~CP~C~~~ih~s~ 25 (186)
..||.|...+...-
T Consensus 52 ~~CP~Cr~~~~~~~ 65 (69)
T 2kiz_A 52 KKCPICRVDIEAQL 65 (69)
T ss_dssp SBCTTTCSBSCSCC
T ss_pred CCCcCcCccccCcC
Confidence 45777777664433
No 140
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=41.51 E-value=12 Score=24.05 Aligned_cols=18 Identities=22% Similarity=0.678 Sum_probs=13.9
Q ss_pred CcCCCCCCcccccccccC
Q psy7979 8 KKIKNTCPSCNIIIHQSH 25 (186)
Q Consensus 8 ~~~~~~CP~C~~~ih~s~ 25 (186)
+...+.||.|.+.|.++.
T Consensus 3 ~~~~k~CP~C~~~Iek~~ 20 (60)
T 1wd2_A 3 AANTKECPKCHVTIEKDG 20 (60)
T ss_dssp CCCCCCCTTTCCCCSSCC
T ss_pred cccceECcCCCCeeEeCC
Confidence 345689999999997644
No 141
>2i5o_A DNA polymerase ETA; zinc finger, DNA polymerase,POL ETA, UBZ, ubiquitin-binding zinc finger, translesion synthesis, ubiquitin-binding domain; HET: DNA; NMR {Homo sapiens}
Probab=41.21 E-value=5.9 Score=23.59 Aligned_cols=13 Identities=15% Similarity=0.554 Sum_probs=10.4
Q ss_pred CCCCCCccccccc
Q psy7979 10 IKNTCPSCNIIIH 22 (186)
Q Consensus 10 ~~~~CP~C~~~ih 22 (186)
+...||.|+..|.
T Consensus 8 ~~~~C~~C~~~i~ 20 (39)
T 2i5o_A 8 DQVPCEKCGSLVP 20 (39)
T ss_dssp CEEECTTTCCEEE
T ss_pred CCcccccccCcCC
Confidence 4468999999984
No 142
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=40.97 E-value=12 Score=24.33 Aligned_cols=24 Identities=25% Similarity=0.513 Sum_probs=18.1
Q ss_pred CCCCCcccccccccCCccccccchh
Q psy7979 11 KNTCPSCNIIIHQSHPLQYISFDRT 35 (186)
Q Consensus 11 ~~~CP~C~~~ih~s~Pl~~i~~D~t 35 (186)
+..||.|+.....++|- -.++|..
T Consensus 18 k~~CP~CG~~T~~~hPa-rfSp~Dk 41 (60)
T 2apo_B 18 KEICPKCGEKTVIPKPP-KFSLEDR 41 (60)
T ss_dssp SSBCSSSCSBCBCCCCC-CCCTTCT
T ss_pred cccCcCCCCcCCCCCCC-CCCCCcc
Confidence 57899999999888985 4455543
No 143
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=40.10 E-value=39 Score=26.90 Aligned_cols=61 Identities=13% Similarity=0.255 Sum_probs=49.3
Q ss_pred CCceeEEEEeccCCCCccccccccEEEecccccHHHHHHHHHHHhhcCCCCCceEEEEeCCEecCCCCcHHHH
Q psy7979 91 DEQVNVYLECSVATTSSLKTLKKRFIRLSSQATITHLKKFVALKLLDEKSKYKEIDILCNDELLGKDHTLKFV 163 (186)
Q Consensus 91 de~vsl~LE~~~~~~~~l~~l~~~ylrcs~~~tV~hLkKfL~~Kl~~~l~~~~~veIlc~~~~L~~~~TL~~I 163 (186)
.+.|.|.+- . ++ ..-++++....++..|++..+.|. +++ ..++-++++|+.|.++.|.++.
T Consensus 27 ~~~I~LkV~-~--~g------~~v~fkIk~~t~l~kL~~ay~er~--Gi~-~~~~RF~FdG~rI~~~~TP~dL 87 (200)
T 3pge_A 27 ETHINLKVS-D--GS------SEIFFKIKKTTPLRRLMEAFAKRQ--GKE-MDSLRFLYDGIRIQADQTPEDL 87 (200)
T ss_dssp CCCEEEEEE-C--SS------CEEEEEECTTSCTHHHHHHHHHHH--SSC-GGGEEEEETTEECCTTCCTTTT
T ss_pred CCeEEEEEe-c--CC------CEEEEEEecCCHHHHHHHHHHHHh--CCC-hhhEEEEECCEEcCCCCCHHHc
Confidence 456887772 1 22 245899999999999999999999 776 4688899999999999998764
No 144
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=38.82 E-value=36 Score=23.11 Aligned_cols=27 Identities=15% Similarity=0.165 Sum_probs=23.2
Q ss_pred EEecccccHHHHHHHHHHHhhcCCCCCce
Q psy7979 116 IRLSSQATITHLKKFVALKLLDEKSKYKE 144 (186)
Q Consensus 116 lrcs~~~tV~hLkKfL~~Kl~~~l~~~~~ 144 (186)
++.|...||..||.-|...+ +++...+
T Consensus 27 ~~l~~~~TV~~LK~~i~~~~--gip~~~q 53 (97)
T 1wjn_A 27 KQLPDSMTVQKVKGLLSRLL--KVPVSEL 53 (97)
T ss_dssp EEEETTSBHHHHHHHHHTTT--TCCTTTC
T ss_pred EECCCCCCHHHHHHHHHHHH--CCChhHe
Confidence 56789999999999999999 8886644
No 145
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=36.35 E-value=14 Score=24.08 Aligned_cols=13 Identities=31% Similarity=0.646 Sum_probs=10.7
Q ss_pred CCCCCcccccccc
Q psy7979 11 KNTCPSCNIIIHQ 23 (186)
Q Consensus 11 ~~~CP~C~~~ih~ 23 (186)
...||.|...+..
T Consensus 56 ~~~CP~Cr~~~~~ 68 (88)
T 2ct2_A 56 GVRCPFCSKITRI 68 (88)
T ss_dssp CBCCTTTCCCBCC
T ss_pred CcCCCCCCCcccc
Confidence 5789999999853
No 146
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=36.11 E-value=21 Score=23.74 Aligned_cols=20 Identities=25% Similarity=0.566 Sum_probs=14.1
Q ss_pred CCCCCCcccccccccCCcccc
Q psy7979 10 IKNTCPSCNIIIHQSHPLQYI 30 (186)
Q Consensus 10 ~~~~CP~C~~~ih~s~Pl~~i 30 (186)
.+..||.|...+. ..++.+.
T Consensus 49 ~~~~CP~CR~~~~-~~~~~~~ 68 (78)
T 1e4u_A 49 ENGLCPACRKPYP-EDPAVYK 68 (78)
T ss_dssp SCSBCTTTCCBCS-SCSSCCC
T ss_pred CCCCCCCCCCccC-CCchhhc
Confidence 4678999999995 4554433
No 147
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=35.40 E-value=22 Score=24.12 Aligned_cols=29 Identities=21% Similarity=0.446 Sum_probs=21.4
Q ss_pred CCCCCc--cccc-ccccCCccccccchhHHhhhHhh
Q psy7979 11 KNTCPS--CNII-IHQSHPLQYISFDRTMQDLVYKL 43 (186)
Q Consensus 11 ~~~CP~--C~~~-ih~s~Pl~~i~~D~tLQdIVyKL 43 (186)
...||+ |... +. . ..|.+|..|..+|..+
T Consensus 48 ~~~CP~tgc~~~~l~--~--~~L~pn~~L~~~I~~~ 79 (94)
T 2yu4_A 48 KAYCPQIGCSHTDIR--K--SDLIQDEALRRAIENH 79 (94)
T ss_dssp CBCCCSTTCCCCCBC--G--GGEEECHHHHHHHHHH
T ss_pred CCCCCcCcCcccccC--H--hhCcCCHHHHHHHHHH
Confidence 568999 9865 52 2 3678999998888655
No 148
>2aus_D NOP10, ribosome biogenesis protein NOP10; isomerase, structural protein, isomerase-structural protein; 2.10A {Pyrococcus abyssi} PDB: 3lwr_B 3lwo_B* 3lwq_B* 3lwp_B 3lwv_B 3hax_C* 2hvy_C* 3hay_C* 2ey4_E 3hjw_B* 2rfk_B* 3hjy_B 3mqk_B
Probab=35.38 E-value=15 Score=23.98 Aligned_cols=24 Identities=33% Similarity=0.595 Sum_probs=18.3
Q ss_pred CCCCCcccccccccCCccccccchh
Q psy7979 11 KNTCPSCNIIIHQSHPLQYISFDRT 35 (186)
Q Consensus 11 ~~~CP~C~~~ih~s~Pl~~i~~D~t 35 (186)
...||.|+.....+||- -..+|..
T Consensus 17 k~~CP~CG~~t~~ahPa-rfSP~Dk 40 (60)
T 2aus_D 17 KETCPVCGEKTKVAHPP-RFSPEDP 40 (60)
T ss_dssp SSBCTTTCSBCEESSCC-CCCSCCT
T ss_pred cccCcCCCCccCCCCCC-CCCCCCc
Confidence 57899999998888995 4555543
No 149
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=34.77 E-value=8.6 Score=28.54 Aligned_cols=33 Identities=15% Similarity=0.106 Sum_probs=18.6
Q ss_pred CCCCCcccccccccCCcc-----ccccchhHHhhhHhh
Q psy7979 11 KNTCPSCNIIIHQSHPLQ-----YISFDRTMQDLVYKL 43 (186)
Q Consensus 11 ~~~CP~C~~~ih~s~Pl~-----~i~~D~tLQdIVyKL 43 (186)
+..||+|...+....+.. .+.+|+.++.+|.+|
T Consensus 66 ~~~CP~Cr~~~~~~~~~~~l~~~~~~~d~~~~~~i~~L 103 (141)
T 3knv_A 66 PQNCAACVHEGIYEEGISILESSSAFPDNAARREVESL 103 (141)
T ss_dssp CEECHHHHHTTCCCTTTTEECGGGCEECHHHHHHHHTS
T ss_pred CCCCCCCCCcccccccccccchhhhcccHHHHHHHccc
Confidence 358999988764332211 334566655555544
No 150
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=34.40 E-value=20 Score=22.99 Aligned_cols=16 Identities=19% Similarity=0.694 Sum_probs=11.6
Q ss_pred CCCCCcccccccccCC
Q psy7979 11 KNTCPSCNIIIHQSHP 26 (186)
Q Consensus 11 ~~~CP~C~~~ih~s~P 26 (186)
+..||.|...+.....
T Consensus 52 ~~~CP~Cr~~~~~~~~ 67 (78)
T 2ect_A 52 HDSCPVCRKSLTGQNT 67 (78)
T ss_dssp TCSCTTTCCCCCCSCS
T ss_pred CCcCcCcCCccCCccc
Confidence 4689999998865433
No 151
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=33.83 E-value=31 Score=22.88 Aligned_cols=45 Identities=27% Similarity=0.251 Sum_probs=32.3
Q ss_pred EE-ecccccHHHHHHHHHHHhhcCCCCCceEEEEeC--CEecC---CCCcHHHH
Q psy7979 116 IR-LSSQATITHLKKFVALKLLDEKSKYKEIDILCN--DELLG---KDHTLKFV 163 (186)
Q Consensus 116 lr-cs~~~tV~hLkKfL~~Kl~~~l~~~~~veIlc~--~~~L~---~~~TL~~I 163 (186)
+. +++..||..||.+|+.+. +++.. +.-++++ +.+|. ++.||.+.
T Consensus 14 v~~l~~~~Tv~~Lk~~I~~~~--gi~~~-~qrL~~~~p~k~l~l~~~~~tL~~~ 64 (86)
T 2kzr_A 14 LQGLSSRTRLRELQGQIAAIT--GIAPG-SQRILVGYPPECLDLSDRDITLGDL 64 (86)
T ss_dssp ECSCCTTCBHHHHHHHHHHHT--CCCTT-TCCCEESSCCCCCCCCCSSCBTTTS
T ss_pred eeecCCCCCHHHHHHHHHHHh--CCCcc-ceEEEeCCCCcccccCCCCCCHHHc
Confidence 55 789999999999999998 77744 3335555 34553 56777654
No 152
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=32.21 E-value=17 Score=21.51 Aligned_cols=12 Identities=33% Similarity=1.007 Sum_probs=9.1
Q ss_pred CCCCCCcccccc
Q psy7979 10 IKNTCPSCNIII 21 (186)
Q Consensus 10 ~~~~CP~C~~~i 21 (186)
.+..||.|...+
T Consensus 42 ~~~~CP~Cr~~~ 53 (55)
T 1iym_A 42 SHSTCPLCRLTV 53 (55)
T ss_dssp TCCSCSSSCCCS
T ss_pred cCCcCcCCCCEe
Confidence 357899998765
No 153
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=32.20 E-value=1.2e+02 Score=20.81 Aligned_cols=62 Identities=13% Similarity=0.046 Sum_probs=44.5
Q ss_pred ccEEEecccccHHHHHHHHHHHhhcCCCCCceEEEEeCCEecCCCCc------HHHH-HHHhccCCCCCeeEE
Q psy7979 113 KRFIRLSSQATITHLKKFVALKLLDEKSKYKEIDILCNDELLGKDHT------LKFV-YITRWRFRTPPLKLQ 178 (186)
Q Consensus 113 ~~ylrcs~~~tV~hLkKfL~~Kl~~~l~~~~~veIlc~~~~L~~~~T------L~~I-~~~~W~~~~~Pm~L~ 178 (186)
-+-+++|..++...|..=++..+ .++....+-+.|.|+. ++-.| |+.+ ..+.-. +++.+.|+
T Consensus 17 i~~~~v~~~i~~~~L~~kv~~~~--~~~~~~~f~lky~DEe-GD~itisSd~EL~eAl~l~~~n-~~~~l~ih 85 (89)
T 1vd2_A 17 IMITHFEPSISFEGLCNEVRDMC--SFDNEQLFTMKWIDEE-GDPCTVSSQLELEEAFRLYELN-KDSELLIH 85 (89)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHT--TCCSSCCEEEEECCSS-SCCEECCSHHHHHHHHHHHHHT-SCCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHh--CCCCCCeEEEEEECCC-CCcccccCHHHHHHHHHHHHcc-CCCCEEEE
Confidence 45778899999999999999999 8887778999998764 44444 4433 434433 36666654
No 154
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=31.92 E-value=17 Score=22.05 Aligned_cols=16 Identities=13% Similarity=0.575 Sum_probs=11.3
Q ss_pred hHHhhhHhhcccchhh
Q psy7979 35 TMQDLVYKLVPNLQAN 50 (186)
Q Consensus 35 tLQdIVyKLVPgL~~~ 50 (186)
.||+|||-||-+|..+
T Consensus 2 ~mQn~mydlvsel~~r 17 (43)
T 2pnv_A 2 SHMNIMYDMISDLNER 17 (43)
T ss_dssp ---CHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHh
Confidence 4899999999888763
No 155
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=31.83 E-value=24 Score=19.35 Aligned_cols=12 Identities=25% Similarity=0.741 Sum_probs=10.0
Q ss_pred CCCCCccccccc
Q psy7979 11 KNTCPSCNIIIH 22 (186)
Q Consensus 11 ~~~CP~C~~~ih 22 (186)
+..||.|+..+.
T Consensus 3 ~~~C~~C~k~Vy 14 (31)
T 1zfo_A 3 NPNCARCGKIVY 14 (31)
T ss_dssp CCBCSSSCSBCC
T ss_pred CCcCCccCCEEe
Confidence 458999999984
No 156
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=31.71 E-value=22 Score=26.53 Aligned_cols=29 Identities=21% Similarity=0.330 Sum_probs=20.2
Q ss_pred CCCCcccccccccCCccccccchhHHhhhHhhc
Q psy7979 12 NTCPSCNIIIHQSHPLQYISFDRTMQDLVYKLV 44 (186)
Q Consensus 12 ~~CP~C~~~ih~s~Pl~~i~~D~tLQdIVyKLV 44 (186)
..||+|...+... .+.+|+.+..+|.+|.
T Consensus 54 ~~CP~Cr~~~~~~----~~~~~~~~~~~i~~l~ 82 (170)
T 3hcs_A 54 HKCPVDNEILLEN----QLFPDNFAKREILSLM 82 (170)
T ss_dssp SBCTTTCCBCCGG----GCEECHHHHHHHHTSE
T ss_pred CCCCCCccCcchh----hhhhhHHHHHHHhhcc
Confidence 4899999888432 3567777777776653
No 157
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.72 E-value=27 Score=22.07 Aligned_cols=15 Identities=33% Similarity=0.815 Sum_probs=10.0
Q ss_pred CCCCCcccccccccC
Q psy7979 11 KNTCPSCNIIIHQSH 25 (186)
Q Consensus 11 ~~~CP~C~~~ih~s~ 25 (186)
+..||.|...+....
T Consensus 52 ~~~CP~Cr~~~~~~~ 66 (74)
T 2ep4_A 52 RKVCPLCNMPVLQLA 66 (74)
T ss_dssp CSBCTTTCCBCSSCC
T ss_pred CCcCCCcCccccccc
Confidence 347888888775433
No 158
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=29.23 E-value=30 Score=23.01 Aligned_cols=45 Identities=13% Similarity=0.072 Sum_probs=31.1
Q ss_pred EEEecccccHHHHHHHHHHHhhcCCC-----CC----ceEEEEeCCEecCCCCcH
Q psy7979 115 FIRLSSQATITHLKKFVALKLLDEKS-----KY----KEIDILCNDELLGKDHTL 160 (186)
Q Consensus 115 ylrcs~~~tV~hLkKfL~~Kl~~~l~-----~~----~~veIlc~~~~L~~~~TL 160 (186)
-+-+|..+||..|...|..++. .+. .. ..+-|+.||+....+..|
T Consensus 21 ~~~~~~~~Tv~~ll~~L~~~~p-~~~~~~l~~~g~l~~~~~v~VN~~~v~~~~~l 74 (89)
T 3po0_A 21 RVDVDGDATVGDALDALVGAHP-ALESRVFGDDGELYDHINVLRNGEAAALGEAT 74 (89)
T ss_dssp EEECCTTCBHHHHHHHHHHHCG-GGHHHHBCTTSCBCTTSEEEETTEECCTTSBC
T ss_pred EEECCCCCcHHHHHHHHHHHCc-HHHHHHhccCCcccccEEEEECCEECCCCccc
Confidence 4556677899999999998872 221 11 136788999888766554
No 159
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=28.70 E-value=22 Score=31.05 Aligned_cols=30 Identities=23% Similarity=0.512 Sum_probs=23.8
Q ss_pred CCCCCCcccccccccCCccccccchhHHhhhHhh
Q psy7979 10 IKNTCPSCNIIIHQSHPLQYISFDRTMQDLVYKL 43 (186)
Q Consensus 10 ~~~~CP~C~~~ih~s~Pl~~i~~D~tLQdIVyKL 43 (186)
..-.||+|+..+ ++..|+-|.-|++|+-.+
T Consensus 287 ~~W~CPIC~k~~----~~~dL~ID~~~~~IL~~~ 316 (371)
T 3i2d_A 287 PTWQCPVCQIDI----ALENLAISEFVDDILQNC 316 (371)
T ss_dssp CCCBCTTTCCBC----CGGGEEEBHHHHHHHTTS
T ss_pred CceeCCCCCccc----CHHHeeEcHHHHHHHHhc
Confidence 457899998766 346899999999997654
No 160
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=28.43 E-value=24 Score=21.62 Aligned_cols=13 Identities=23% Similarity=0.544 Sum_probs=9.5
Q ss_pred CcCCCCCCccccc
Q psy7979 8 KKIKNTCPSCNII 20 (186)
Q Consensus 8 ~~~~~~CP~C~~~ 20 (186)
-.+.-.||+|+..
T Consensus 27 lP~dw~CP~Cg~~ 39 (46)
T 6rxn_A 27 LPDDWCCPVCGVS 39 (46)
T ss_dssp SCTTCBCTTTCCB
T ss_pred CCCCCcCcCCCCc
Confidence 3455689999974
No 161
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=28.31 E-value=23 Score=22.04 Aligned_cols=13 Identities=46% Similarity=1.037 Sum_probs=10.7
Q ss_pred CCCCCcccccccc
Q psy7979 11 KNTCPSCNIIIHQ 23 (186)
Q Consensus 11 ~~~CP~C~~~ih~ 23 (186)
+..||.|...+..
T Consensus 51 ~~~CP~Cr~~~~~ 63 (71)
T 3ng2_A 51 ANTCPTCRKKINH 63 (71)
T ss_dssp CSBCTTTCCBCCC
T ss_pred CCCCCCCCCccCh
Confidence 4689999999853
No 162
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.86 E-value=28 Score=21.53 Aligned_cols=14 Identities=21% Similarity=0.510 Sum_probs=10.2
Q ss_pred CCCCCCcccccccc
Q psy7979 10 IKNTCPSCNIIIHQ 23 (186)
Q Consensus 10 ~~~~CP~C~~~ih~ 23 (186)
.+..||.|...+..
T Consensus 49 ~~~~CP~Cr~~~~~ 62 (66)
T 2ecy_A 49 SSPKCTACQESIVK 62 (66)
T ss_dssp SSCCCTTTCCCCCT
T ss_pred CcCCCCCCCcCCCh
Confidence 45679999888743
No 163
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=27.38 E-value=24 Score=21.32 Aligned_cols=13 Identities=46% Similarity=1.037 Sum_probs=10.7
Q ss_pred CCCCCcccccccc
Q psy7979 11 KNTCPSCNIIIHQ 23 (186)
Q Consensus 11 ~~~CP~C~~~ih~ 23 (186)
+..||.|...+..
T Consensus 44 ~~~CP~Cr~~~~~ 56 (64)
T 2xeu_A 44 ANTCPTCRKKINH 56 (64)
T ss_dssp CSBCTTTCCBCTT
T ss_pred CCCCCCCCccCCc
Confidence 5689999999853
No 164
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=26.94 E-value=25 Score=24.28 Aligned_cols=15 Identities=33% Similarity=0.660 Sum_probs=12.1
Q ss_pred cCCCCCCcccccccc
Q psy7979 9 KIKNTCPSCNIIIHQ 23 (186)
Q Consensus 9 ~~~~~CP~C~~~ih~ 23 (186)
..+..||.|...++.
T Consensus 80 ~~~~~CP~CR~~~~~ 94 (114)
T 1v87_A 80 DGSLQCPSCKTIYGE 94 (114)
T ss_dssp SSCCBCTTTCCBSSS
T ss_pred CCCCcCCCCCCccCC
Confidence 456799999999864
No 165
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=26.89 E-value=42 Score=26.98 Aligned_cols=61 Identities=13% Similarity=0.226 Sum_probs=48.5
Q ss_pred CCceeEEEEeccCCCCccccccccEEEecccccHHHHHHHHHHHhhcCCCCCceEEEEeCCEecCCCCcHHHH
Q psy7979 91 DEQVNVYLECSVATTSSLKTLKKRFIRLSSQATITHLKKFVALKLLDEKSKYKEIDILCNDELLGKDHTLKFV 163 (186)
Q Consensus 91 de~vsl~LE~~~~~~~~l~~l~~~ylrcs~~~tV~hLkKfL~~Kl~~~l~~~~~veIlc~~~~L~~~~TL~~I 163 (186)
.+.|.|.+-. ++ ..-++++....++..|.+..+.|. +++. ..+-++++|..|.++.|.+++
T Consensus 55 ~e~InLKVk~---dG------~eV~FKIKrtTpL~KLmeAYcERq--GL~~-~sIRFLFDGqRI~~ddTPeDL 115 (207)
T 3tix_A 55 ETHINLKVSD---GS------SEIFFKIKKTTPLRRLMEAFAKRQ--GKEM-DSLTFLYDGIEIQADQTPEDL 115 (207)
T ss_dssp CCEEEEEEEC---SS------CEEEEEEETTSCTHHHHHHHHHHT--TCCG-GGSCEEETTEECCSSCCTTTT
T ss_pred CCcEEEEEec---CC------CEEEEEEccCChHHHHHHHHHHHh--CCCc-ccEEEEECCeecCCCCCHHHc
Confidence 4567777731 12 245899999999999999999999 7774 578899999999999998754
No 166
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=26.77 E-value=1.1e+02 Score=23.98 Aligned_cols=50 Identities=24% Similarity=0.224 Sum_probs=36.1
Q ss_pred EEEecccccHHHHHHHHHHHhhcCCCCCceEEEE--e-CC--EecCC-CCcHHHHHHH
Q psy7979 115 FIRLSSQATITHLKKFVALKLLDEKSKYKEIDIL--C-ND--ELLGK-DHTLKFVYIT 166 (186)
Q Consensus 115 ylrcs~~~tV~hLkKfL~~Kl~~~l~~~~~veIl--c-~~--~~L~~-~~TL~~I~~~ 166 (186)
-++.|...||..|.+.++..+ +++...++-+. + .+ +.|.+ +.||++..+.
T Consensus 143 ~~~~Sk~~ti~~l~~~~~~~~--~i~~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~ 198 (217)
T 4a3p_A 143 TRRFSKADTIDTIEKEIRKIF--SIPDEKETRLWNKYMSNTFEPLNKPDSTIQDAGLY 198 (217)
T ss_dssp EEEECTTSBHHHHHHHHHHHT--TCCTTSCEEEEEEEETTEEEECCCTTSBHHHHTCC
T ss_pred EEEEcccchHHHHHHHHHHHh--CCCCCCceEEEEecCCCCeeecCCCCCCHHHhCCC
Confidence 466799999999999999999 88765455433 2 22 45555 6799987543
No 167
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=26.75 E-value=18 Score=24.00 Aligned_cols=27 Identities=19% Similarity=0.594 Sum_probs=15.9
Q ss_pred CCCCcccccccccCCccccccchhHHhh
Q psy7979 12 NTCPSCNIIIHQSHPLQYISFDRTMQDL 39 (186)
Q Consensus 12 ~~CP~C~~~ih~s~Pl~~i~~D~tLQdI 39 (186)
..||.|...|..... .++.++.++-++
T Consensus 50 ~~CP~Cr~~i~~~~~-i~~p~~~~~~~~ 76 (79)
T 2yho_A 50 QSCPVCRSRVEHVQH-VYLPTHTSLLNL 76 (79)
T ss_dssp SBCTTTCCBCCEEEE-CBCTTCCC----
T ss_pred CcCCCCCchhhCeEE-EEeCcchhhhhh
Confidence 489999999965432 355666666554
No 168
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.62 E-value=32 Score=21.51 Aligned_cols=13 Identities=23% Similarity=0.508 Sum_probs=10.0
Q ss_pred CCCCCCccccccc
Q psy7979 10 IKNTCPSCNIIIH 22 (186)
Q Consensus 10 ~~~~CP~C~~~ih 22 (186)
.+..||.|...+.
T Consensus 56 ~~~~CP~Cr~~~~ 68 (73)
T 2ysl_A 56 GFFKCPLCKTSVR 68 (73)
T ss_dssp SCCCCSSSCCCCC
T ss_pred CCCCCCCCCCcCC
Confidence 4568999988884
No 169
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.07 E-value=17 Score=22.86 Aligned_cols=15 Identities=20% Similarity=0.696 Sum_probs=10.7
Q ss_pred CCCCCCccccccccc
Q psy7979 10 IKNTCPSCNIIIHQS 24 (186)
Q Consensus 10 ~~~~CP~C~~~ih~s 24 (186)
.+..||.|...+...
T Consensus 47 ~~~~CP~Cr~~~~~~ 61 (70)
T 2ecn_A 47 RHRNCPICRLQMTGA 61 (70)
T ss_dssp CCSSCHHHHHCTTCC
T ss_pred CcCcCCCcCCcccCC
Confidence 457888888887543
No 170
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.03 E-value=26 Score=21.53 Aligned_cols=12 Identities=50% Similarity=1.090 Sum_probs=9.9
Q ss_pred CCCCCccccccc
Q psy7979 11 KNTCPSCNIIIH 22 (186)
Q Consensus 11 ~~~CP~C~~~ih 22 (186)
+..||.|...+.
T Consensus 56 ~~~CP~Cr~~~~ 67 (69)
T 2ea6_A 56 ANTCPTCRKKIN 67 (69)
T ss_dssp CSSCTTTCCCCC
T ss_pred CCCCCCCCCccC
Confidence 568999998874
No 171
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=24.41 E-value=30 Score=30.11 Aligned_cols=30 Identities=13% Similarity=0.347 Sum_probs=24.2
Q ss_pred CCCCCCcccccccccCCccccccchhHHhhhHhh
Q psy7979 10 IKNTCPSCNIIIHQSHPLQYISFDRTMQDLVYKL 43 (186)
Q Consensus 10 ~~~~CP~C~~~ih~s~Pl~~i~~D~tLQdIVyKL 43 (186)
..-.||+|+..+ ++..|+-|.-|++|+-.+
T Consensus 253 ~~W~CPiC~k~~----~~~dL~ID~~~~~IL~~~ 282 (360)
T 4fo9_A 253 PTWICPVCDKKA----AYESLILDGLFMEILNDC 282 (360)
T ss_dssp CCCBCTTTCSBC----CGGGEEEBHHHHHHHTTC
T ss_pred CCeECCCCCccc----CHHHeEEcHHHHHHHHhC
Confidence 457899999876 346899999999998654
No 172
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.78 E-value=28 Score=22.86 Aligned_cols=13 Identities=31% Similarity=0.570 Sum_probs=10.3
Q ss_pred CCCCCCccccccc
Q psy7979 10 IKNTCPSCNIIIH 22 (186)
Q Consensus 10 ~~~~CP~C~~~ih 22 (186)
.+++||.|...+.
T Consensus 63 ~~~~CP~CR~~~~ 75 (81)
T 2ecl_A 63 QNNRCPLCQQDWV 75 (81)
T ss_dssp TCCBCTTTCCBCC
T ss_pred hCCCCCCcCCCcc
Confidence 4579999998874
No 173
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*
Probab=23.72 E-value=37 Score=21.77 Aligned_cols=42 Identities=12% Similarity=0.259 Sum_probs=28.4
Q ss_pred EecccccHHHHHHHHHHHhhcCCCCCceEEEEeCCEecCCCCcH
Q psy7979 117 RLSSQATITHLKKFVALKLLDEKSKYKEIDILCNDELLGKDHTL 160 (186)
Q Consensus 117 rcs~~~tV~hLkKfL~~Kl~~~l~~~~~veIlc~~~~L~~~~TL 160 (186)
.++...||..|...|..++. .+..- .+-|..||+..+.+..|
T Consensus 21 ~~~~~~tv~~ll~~l~~~~p-~~~~v-~~~v~vNg~~v~~~~~L 62 (77)
T 2q5w_D 21 VLEQALTVQQFEDLLFERYP-QINNK-KFQVAVNEEFVQKSDFI 62 (77)
T ss_dssp CCSSCEEHHHHHHHHHHHCG-GGTTC-CCEEEETTEEECTTSEE
T ss_pred ECCCCCCHHHHHHHHHHHCc-chhcc-eEEEEECCEECCCCCCc
Confidence 34677899999999888852 12211 22688899988876544
No 174
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=23.57 E-value=28 Score=21.90 Aligned_cols=14 Identities=29% Similarity=0.688 Sum_probs=11.1
Q ss_pred CCCCCCcccccccc
Q psy7979 10 IKNTCPSCNIIIHQ 23 (186)
Q Consensus 10 ~~~~CP~C~~~ih~ 23 (186)
.+..||.|...|..
T Consensus 44 ~~~~CPiCR~~i~~ 57 (64)
T 2vje_A 44 RNKPCPVCRQPIQM 57 (64)
T ss_dssp TTCCCTTTCCCCCE
T ss_pred cCCcCCCcCcchhc
Confidence 35689999999854
No 175
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=22.65 E-value=24 Score=19.44 Aligned_cols=11 Identities=27% Similarity=0.754 Sum_probs=9.1
Q ss_pred CCCCCcccccc
Q psy7979 11 KNTCPSCNIII 21 (186)
Q Consensus 11 ~~~CP~C~~~i 21 (186)
...||+|..+.
T Consensus 3 k~~CpvCk~q~ 13 (28)
T 2jvx_A 3 DFCCPKCQYQA 13 (28)
T ss_dssp CEECTTSSCEE
T ss_pred cccCccccccC
Confidence 45799999887
No 176
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=22.51 E-value=47 Score=23.00 Aligned_cols=21 Identities=33% Similarity=0.575 Sum_probs=14.1
Q ss_pred CCCCCCcccccccccCCccccc
Q psy7979 10 IKNTCPSCNIIIHQSHPLQYIS 31 (186)
Q Consensus 10 ~~~~CP~C~~~ih~s~Pl~~i~ 31 (186)
.++.||+|...+. ...+..+.
T Consensus 47 ~~~~CP~Cr~~~~-~~~l~~l~ 67 (133)
T 4ap4_A 47 NANTCPTCRKKIN-HKRYHPIY 67 (133)
T ss_dssp TCSBCTTTCCBCT-TTCEEECB
T ss_pred hCCCCCCCCCcCc-cccccccc
Confidence 3469999999995 34443343
No 177
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=22.49 E-value=31 Score=21.63 Aligned_cols=13 Identities=31% Similarity=0.731 Sum_probs=10.7
Q ss_pred CCCCCcccccccc
Q psy7979 11 KNTCPSCNIIIHQ 23 (186)
Q Consensus 11 ~~~CP~C~~~ih~ 23 (186)
+..||.|...|..
T Consensus 44 ~~~CPiCR~~i~~ 56 (63)
T 2vje_B 44 GASCPICKKEIQL 56 (63)
T ss_dssp TCBCTTTCCBCCE
T ss_pred CCcCCCcCchhhc
Confidence 4789999999854
No 178
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=22.36 E-value=51 Score=22.42 Aligned_cols=48 Identities=13% Similarity=0.079 Sum_probs=34.6
Q ss_pred EEEecccccHHHHHHHHHHHhhcCCCCC--ceEEEEeCCEecCCCCcHHH
Q psy7979 115 FIRLSSQATITHLKKFVALKLLDEKSKY--KEIDILCNDELLGKDHTLKF 162 (186)
Q Consensus 115 ylrcs~~~tV~hLkKfL~~Kl~~~l~~~--~~veIlc~~~~L~~~~TL~~ 162 (186)
=||.|...||.-|..-|..-++...+.. +.+-+.=.+..|.++.+|.+
T Consensus 20 DLRIP~~~tvK~Li~~l~ea~~l~~~~~~~~~irv~NK~~~L~~~~~L~d 69 (81)
T 2bps_A 20 DLRLSDYHPVKKVIDIAWQAQSVSMPPREGHWIRVVNKDKVFSGECKLSD 69 (81)
T ss_dssp EEEEETTSBTTHHHHHHHHHSCCCSCCCTTCEEEEGGGTEEEETTSBTGG
T ss_pred EEECCCchhHHHHHHHHHHHhCCCcCCCCCCEEEEecCCEEEcCCCEEee
Confidence 4899999999999999999994343222 44544445678888777754
No 179
>2juo_A GA-binding protein alpha chain; OST, ubiquitin, transcription factor, ensemble, DNA-binding, nucleus, transcription regulation; NMR {Mus musculus}
Probab=22.02 E-value=68 Score=22.34 Aligned_cols=39 Identities=26% Similarity=0.227 Sum_probs=30.1
Q ss_pred cccHHHHHHHHHHHhhcCCCCCceEEEEeCCEecCCCCcHHH
Q psy7979 121 QATITHLKKFVALKLLDEKSKYKEIDILCNDELLGKDHTLKF 162 (186)
Q Consensus 121 ~~tV~hLkKfL~~Kl~~~l~~~~~veIlc~~~~L~~~~TL~~ 162 (186)
+-+++.||+.|-.|++.+|. .-+|+..|..|.++.||-+
T Consensus 12 ~epL~~Lk~LLe~Rl~i~L~---~y~f~LQd~~L~~~k~Lvd 50 (89)
T 2juo_A 12 NEPIGNLKKLLEPRLQCSLD---AHEICLQDIQLDPDRSLFD 50 (89)
T ss_dssp SSBGGGHHHHSHHHHCSCCS---SCEEEETTEECCTTSBTTT
T ss_pred cCcHHHHHHHHHHHhcCCcc---cCeEEeeccccCCCccHHH
Confidence 44678899999999944443 4577888888999998854
No 180
>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.98 E-value=1.3e+02 Score=21.00 Aligned_cols=70 Identities=20% Similarity=0.250 Sum_probs=52.0
Q ss_pred CCCceeEEEEeccCCCCccccccccEEEecccccHHHHHHHHHHHhhcCCCCCceEEEEe---CCEecCCCCcHHHH---
Q psy7979 90 LDEQVNVYLECSVATTSSLKTLKKRFIRLSSQATITHLKKFVALKLLDEKSKYKEIDILC---NDELLGKDHTLKFV--- 163 (186)
Q Consensus 90 ~de~vsl~LE~~~~~~~~l~~l~~~ylrcs~~~tV~hLkKfL~~Kl~~~l~~~~~veIlc---~~~~L~~~~TL~~I--- 163 (186)
++--|.|.+. ++...+..+|+|..++...|---|+.|= +++.. .+.++- .+++|.=+.||.|.
T Consensus 7 PE~TvRLvVN--------y~~tQKtVvRVSP~vpL~ellp~IC~Kc--efdp~-~~~Ll~d~~~~e~LdLskSLndlgir 75 (91)
T 2daj_A 7 GEKTVRVVIN--------FKKTQKTIVRVSPHASLQELAPIICSKC--EFDPL-HTLLLKDYQSQEPLDLTKSLNDLGLR 75 (91)
T ss_dssp CCSCEEEEEE--------ETTTEEEEEEECSSSCTTTHHHHHHHHT--TCCTT-SEEEESCSSCCCBCCTTSCHHHHTCS
T ss_pred CccEEEEEEe--------ecCcceeEEEeCCCCcHHHHHHHHhhcc--cCChh-hEEEecCCCCCcccchhcchhhhhhh
Confidence 3344666664 4456788999999999999999999998 66655 444543 36899999999885
Q ss_pred HHHhccC
Q psy7979 164 YITRWRF 170 (186)
Q Consensus 164 ~~~~W~~ 170 (186)
-.|.|..
T Consensus 76 ELya~d~ 82 (91)
T 2daj_A 76 ELYAMDV 82 (91)
T ss_dssp EEEEEEC
T ss_pred hhheecc
Confidence 3456654
No 181
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.94 E-value=36 Score=21.42 Aligned_cols=13 Identities=23% Similarity=0.539 Sum_probs=10.4
Q ss_pred CCCCCcccccccc
Q psy7979 11 KNTCPSCNIIIHQ 23 (186)
Q Consensus 11 ~~~CP~C~~~ih~ 23 (186)
+..||+|...+..
T Consensus 49 ~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 49 GKRCALCRQEIPE 61 (71)
T ss_dssp SSBCSSSCCBCCH
T ss_pred CCcCcCcCchhCH
Confidence 4789999998853
No 182
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=21.60 E-value=67 Score=21.83 Aligned_cols=45 Identities=18% Similarity=0.196 Sum_probs=30.9
Q ss_pred EEEecccccHHHHHHHHHHHhhcCCCC---------CceEEEEeCCEecCCCCcH
Q psy7979 115 FIRLSSQATITHLKKFVALKLLDEKSK---------YKEIDILCNDELLGKDHTL 160 (186)
Q Consensus 115 ylrcs~~~tV~hLkKfL~~Kl~~~l~~---------~~~veIlc~~~~L~~~~TL 160 (186)
-+.++...||..|...|..++. .+.. ...+-|+.||+..+.+..|
T Consensus 30 ~~e~~~~~Tv~~Ll~~L~~~~p-~l~~~l~~~~g~~~~~v~v~VNg~~v~~~~~L 83 (98)
T 1vjk_A 30 EIELPEGARVRDLIEEIKKRHE-KFKEEVFGEGYDEDADVNIAVNGRYVSWDEEL 83 (98)
T ss_dssp EEEECTTCBHHHHHHHHHHHCG-GGGGSCBCSSSCTTSSBEEEETTBCCCTTCBC
T ss_pred EEECCCCCCHHHHHHHHHhHCh-hHHHHhhccccccCCcEEEEECCEECCCCCCC
Confidence 4556777999999999988852 2211 1346688899888765544
No 183
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.96 E-value=36 Score=21.60 Aligned_cols=11 Identities=36% Similarity=0.797 Sum_probs=7.1
Q ss_pred CCCCCcccccc
Q psy7979 11 KNTCPSCNIII 21 (186)
Q Consensus 11 ~~~CP~C~~~i 21 (186)
+..||.|...+
T Consensus 60 ~~~CP~Cr~~~ 70 (75)
T 1x4j_A 60 NRTCPICRADS 70 (75)
T ss_dssp CSSCTTTCCCC
T ss_pred CCcCcCcCCcC
Confidence 35677777665
Done!