RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy7979
         (186 letters)



>d1b35a_ b.121.4.1 (A:) Insect picorna-like virus coat proteins
           {Cricket paralysis virus [TaxId: 12136]}
          Length = 260

 Score = 28.9 bits (64), Expect = 0.35
 Identities = 11/50 (22%), Positives = 19/50 (38%), Gaps = 1/50 (2%)

Query: 75  EEEENTDQVNSDYHRLDEQVNVYLECSVATTSSLKTLKKRFIRLSSQATI 124
           E +     ++ D HR+    +    C      S++ L KRF  +   A  
Sbjct: 12  EAQHGVHPISIDTHRISNNWSPQAMCIGEKVVSIRQLIKRF-GIFGDANT 60


>d1iyka2 d.108.1.2 (A:225-451) N-myristoyl transferase, NMT {Yeast
           (Candida albicans) [TaxId: 5476]}
          Length = 227

 Score = 24.4 bits (53), Expect = 7.8
 Identities = 20/82 (24%), Positives = 27/82 (32%), Gaps = 12/82 (14%)

Query: 71  LLEDEEEENTDQV---NSDYHRLDEQVN-----VYLECSVATTSSLKTLKKRFIRLSSQA 122
           ++EDE    TD        +  LD   +      YL    + +      KKR   L + A
Sbjct: 96  VVEDENGIITDYFSYYLLPFTVLDNAQHDELGIAYLFYYASDSFEKPNYKKRLNELITDA 155

Query: 123 TITHLKK----FVALKLLDEKS 140
            IT  K     F  L   D   
Sbjct: 156 LITSKKFGVDVFNCLTCQDNTY 177


>d2pjsa1 d.32.1.2 (A:3-113) Uncharacterized protein Atu1953
          {Agrobacterium tumefaciens [TaxId: 358]}
          Length = 111

 Score = 23.8 bits (50), Expect = 8.2
 Identities = 7/21 (33%), Positives = 11/21 (52%)

Query: 40 VYKLVPNLQANEMKREREFYR 60
          V ++V N+   E  R + FY 
Sbjct: 1  VRRVVANIATPEPARAQAFYG 21


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.137    0.403 

Gapped
Lambda     K      H
   0.267   0.0428    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 706,053
Number of extensions: 32205
Number of successful extensions: 100
Number of sequences better than 10.0: 1
Number of HSP's gapped: 100
Number of HSP's successfully gapped: 13
Length of query: 186
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 106
Effective length of database: 1,309,196
Effective search space: 138774776
Effective search space used: 138774776
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.8 bits)