BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7980
(93 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P11346|KRAF1_DROME Raf homolog serine/threonine-protein kinase phl OS=Drosophila
melanogaster GN=phl PE=1 SV=5
Length = 782
Score = 62.8 bits (151), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 46/73 (63%), Gaps = 1/73 (1%)
Query: 10 ILLRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKPEMCTAYDSNTGVS-LQWDTDSD 68
ILLRA LPNQQRTSV + G L +AL KA+KLR L P+MC +++G + W TD
Sbjct: 184 ILLRAHLPNQQRTSVEVISGVRLCDALMKALKLRQLTPDMCEVSTTHSGRHIIPWHTDIG 243
Query: 69 HLPTTEIRVEVME 81
L EI V +++
Sbjct: 244 TLHVEEIFVRLLD 256
>sp|P28028|BRAF_MOUSE Serine/threonine-protein kinase B-raf OS=Mus musculus GN=Braf PE=1
SV=3
Length = 804
Score = 58.9 bits (141), Expect = 9e-09, Method: Composition-based stats.
Identities = 34/84 (40%), Positives = 49/84 (58%), Gaps = 3/84 (3%)
Query: 7 PRGILLRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKPEMCTAYDSNTGVS--LQWD 64
P+ ++R LPN+QRT V R G T+ ++L KA+ +R L PE C Y G + WD
Sbjct: 136 PQKPIVRVFLPNKQRTVVPARCGVTVRDSLKKALMMRGLIPECCAVYRIQDGEKKPIGWD 195
Query: 65 TDSDHLPTTEIRVEVMEGNLALSS 88
TD L E+ VEV+E N+ L++
Sbjct: 196 TDISWLTGEELHVEVLE-NVPLTT 218
>sp|P34908|BRAF_COTJA Serine/threonine-protein kinase B-raf OS=Coturnix coturnix japonica
GN=BRAF PE=2 SV=1
Length = 807
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 49/84 (58%), Gaps = 3/84 (3%)
Query: 7 PRGILLRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKPEMCTAYDSNTGVS--LQWD 64
P+ ++R LPN+QRT V R G T+ ++L KA+ +R L PE C Y G + WD
Sbjct: 152 PQKPIVRVFLPNKQRTVVPARCGVTVRDSLKKALMMRGLIPECCAVYRIQDGEKKPIGWD 211
Query: 65 TDSDHLPTTEIRVEVMEGNLALSS 88
TD L E+ VEV+E N+ L++
Sbjct: 212 TDISWLTGEELHVEVLE-NVPLTT 234
>sp|Q04982|BRAF_CHICK Serine/threonine-protein kinase B-raf OS=Gallus gallus GN=BRAF PE=1
SV=1
Length = 806
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 49/84 (58%), Gaps = 3/84 (3%)
Query: 7 PRGILLRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKPEMCTAYDSNTGVS--LQWD 64
P+ ++R LPN+QRT V R G T+ ++L KA+ +R L PE C Y G + WD
Sbjct: 152 PQKPIVRVFLPNKQRTVVPARCGVTVRDSLKKALMMRGLIPECCAVYRIQDGEKKPIGWD 211
Query: 65 TDSDHLPTTEIRVEVMEGNLALSS 88
TD L E+ VEV+E N+ L++
Sbjct: 212 TDISWLTGEELHVEVLE-NVPLTT 234
>sp|P15056|BRAF_HUMAN Serine/threonine-protein kinase B-raf OS=Homo sapiens GN=BRAF PE=1
SV=4
Length = 766
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 49/84 (58%), Gaps = 3/84 (3%)
Query: 7 PRGILLRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKPEMCTAYDSNTGVS--LQWD 64
P+ ++R LPN+QRT V R G T+ ++L KA+ +R L PE C Y G + WD
Sbjct: 152 PQKPIVRVFLPNKQRTVVPARCGVTVRDSLKKALMMRGLIPECCAVYRIQDGEKKPIGWD 211
Query: 65 TDSDHLPTTEIRVEVMEGNLALSS 88
TD L E+ VEV+E N+ L++
Sbjct: 212 TDISWLTGEELHVEVLE-NVPLTT 234
>sp|P05625|RAF1_CHICK RAF proto-oncogene serine/threonine-protein kinase OS=Gallus gallus
GN=RAF1 PE=2 SV=1
Length = 647
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 45/75 (60%), Gaps = 5/75 (6%)
Query: 12 LRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKPEMCTAY-----DSNTGVSLQWDTD 66
+R LPN+QRT V++R G TL + L KA+K+R L+PE C + V L W+TD
Sbjct: 58 IRVFLPNKQRTVVNVRNGMTLHDCLMKALKVRGLQPECCAVFRLVTEPKGKKVRLDWNTD 117
Query: 67 SDHLPTTEIRVEVME 81
+ L E++V+ ++
Sbjct: 118 AASLIGEELQVDFLD 132
>sp|P09560|RAF1_XENLA RAF proto-oncogene serine/threonine-protein kinase OS=Xenopus
laevis GN=raf1 PE=2 SV=1
Length = 638
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 46/74 (62%), Gaps = 4/74 (5%)
Query: 12 LRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKPEMCTAY----DSNTGVSLQWDTDS 67
+R LPN+QRT V++R G +L + L K++K+R L+PE C + D + L W+TD+
Sbjct: 58 MRVYLPNKQRTVVNVRSGMSLHDCLMKSLKVRGLQPECCAVFRLIQDPKGKLRLDWNTDA 117
Query: 68 DHLPTTEIRVEVME 81
L E++V+ ++
Sbjct: 118 MSLVGAELQVDFLD 131
>sp|Q5R5M7|RAF1_PONAB RAF proto-oncogene serine/threonine-protein kinase OS=Pongo abelii
GN=RAF1 PE=2 SV=1
Length = 648
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 44/75 (58%), Gaps = 5/75 (6%)
Query: 12 LRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKPEMCTAY-----DSNTGVSLQWDTD 66
+R LPN+QRT V++R G +L + L KA+K+R L+PE C + L W+TD
Sbjct: 58 IRVFLPNKQRTVVNVRNGMSLHDCLMKALKVRGLQPECCAVFRLLHEHKGKKARLDWNTD 117
Query: 67 SDHLPTTEIRVEVME 81
+ L E++V+ ++
Sbjct: 118 AASLIGEELQVDFLD 132
>sp|P04049|RAF1_HUMAN RAF proto-oncogene serine/threonine-protein kinase OS=Homo sapiens
GN=RAF1 PE=1 SV=1
Length = 648
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 44/75 (58%), Gaps = 5/75 (6%)
Query: 12 LRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKPEMCTAY-----DSNTGVSLQWDTD 66
+R LPN+QRT V++R G +L + L KA+K+R L+PE C + L W+TD
Sbjct: 58 IRVFLPNKQRTVVNVRNGMSLHDCLMKALKVRGLQPECCAVFRLLHEHKGKKARLDWNTD 117
Query: 67 SDHLPTTEIRVEVME 81
+ L E++V+ ++
Sbjct: 118 AASLIGEELQVDFLD 132
>sp|Q99N57|RAF1_MOUSE RAF proto-oncogene serine/threonine-protein kinase OS=Mus musculus
GN=Raf1 PE=1 SV=2
Length = 648
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 44/75 (58%), Gaps = 5/75 (6%)
Query: 12 LRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKPEMCTAY-----DSNTGVSLQWDTD 66
+R LPN+QRT V++R G +L + L KA+K+R L+PE C + L W+TD
Sbjct: 58 IRVFLPNKQRTVVNVRNGMSLHDCLMKALKVRGLQPECCAVFRLLQEHKGKKARLDWNTD 117
Query: 67 SDHLPTTEIRVEVME 81
+ L E++V+ ++
Sbjct: 118 AASLIGEELQVDFLD 132
>sp|A7E3S4|RAF1_BOVIN RAF proto-oncogene serine/threonine-protein kinase OS=Bos taurus
GN=RAF1 PE=2 SV=1
Length = 648
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 44/75 (58%), Gaps = 5/75 (6%)
Query: 12 LRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKPEMCTAY-----DSNTGVSLQWDTD 66
+R LPN+QRT V++R G +L + L KA+K+R L+PE C + L W+TD
Sbjct: 58 IRVFLPNKQRTVVNVRNGMSLHDCLMKALKVRGLQPECCAVFRLLHEHKGKKARLDWNTD 117
Query: 67 SDHLPTTEIRVEVME 81
+ L E++V+ ++
Sbjct: 118 AASLIGEELQVDFLD 132
>sp|P11345|RAF1_RAT RAF proto-oncogene serine/threonine-protein kinase OS=Rattus
norvegicus GN=Raf1 PE=1 SV=1
Length = 648
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 44/75 (58%), Gaps = 5/75 (6%)
Query: 12 LRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKPEMCTAY-----DSNTGVSLQWDTD 66
+R LPN+QRT V++R G +L + L KA+K+R L+PE C + L W+TD
Sbjct: 58 IRVFLPNKQRTVVNVRNGMSLHDCLMKALKVRGLQPECCAVFRLLQEHKGKKARLDWNTD 117
Query: 67 SDHLPTTEIRVEVME 81
+ L E++V+ ++
Sbjct: 118 AASLIGEELQVDFLD 132
>sp|P04627|ARAF_MOUSE Serine/threonine-protein kinase A-Raf OS=Mus musculus GN=Araf
PE=2 SV=2
Length = 604
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 41/72 (56%), Gaps = 2/72 (2%)
Query: 12 LRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKPEMCTAYDSNTG--VSLQWDTDSDH 69
++ LPN+QRT V +R+G ++ ++L KA+K+R L + C Y G WDT
Sbjct: 21 VKVYLPNKQRTVVTVREGMSVYDSLDKALKVRGLNQDCCVVYRLIKGRKTVTAWDTAIAP 80
Query: 70 LPTTEIRVEVME 81
L E+ VEV+E
Sbjct: 81 LDGEELIVEVLE 92
>sp|P14056|ARAF_RAT Serine/threonine-protein kinase A-Raf OS=Rattus norvegicus
GN=Araf PE=2 SV=1
Length = 604
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 40/72 (55%), Gaps = 2/72 (2%)
Query: 12 LRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKPEMCTAYDSNTG--VSLQWDTDSDH 69
++ LPN+QRT V +R G ++ ++L KA+K+R L + C Y G WDT
Sbjct: 21 VKVYLPNKQRTVVTVRDGMSVYDSLDKALKVRGLNQDCCVVYRLIKGRKTVTAWDTAIAP 80
Query: 70 LPTTEIRVEVME 81
L E+ VEV+E
Sbjct: 81 LDGEELIVEVLE 92
>sp|P10398|ARAF_HUMAN Serine/threonine-protein kinase A-Raf OS=Homo sapiens GN=ARAF
PE=1 SV=2
Length = 606
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 40/72 (55%), Gaps = 2/72 (2%)
Query: 12 LRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKPEMCTAYDSNTG--VSLQWDTDSDH 69
++ LPN+QRT V +R G ++ ++L KA+K+R L + C Y G WDT
Sbjct: 21 VKVYLPNKQRTVVTVRDGMSVYDSLDKALKVRGLNQDCCVVYRLIKGRKTVTAWDTAIAP 80
Query: 70 LPTTEIRVEVME 81
L E+ VEV+E
Sbjct: 81 LDGEELIVEVLE 92
>sp|O19004|ARAF_PIG Serine/threonine-protein kinase A-Raf OS=Sus scrofa GN=ARAF PE=2
SV=1
Length = 606
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 40/72 (55%), Gaps = 2/72 (2%)
Query: 12 LRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKPEMCTAYDSNTG--VSLQWDTDSDH 69
++ LPN+QRT V +R G ++ ++L KA+K+R L + C Y G WDT
Sbjct: 21 VKVYLPNKQRTVVTVRDGMSVYDSLDKALKVRGLNQDCCVVYRLIKGRKTVTAWDTAIAP 80
Query: 70 LPTTEIRVEVME 81
L E+ VEV+E
Sbjct: 81 LDGEELIVEVLE 92
>sp|Q61UC4|KRAF1_CAEBR Raf homolog serine/threonine-protein kinase OS=Caenorhabditis
briggsae GN=lin-45 PE=3 SV=2
Length = 811
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 41/74 (55%), Gaps = 6/74 (8%)
Query: 11 LLRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKPEMC---TAYDSNT---GVSLQWD 64
++ LP Q + V +R G+T +A+SK +K RN+ P++C T+ DS T +S +
Sbjct: 85 MIMVHLPFDQHSRVEVRPGETARDAISKLLKKRNITPQLCQVNTSPDSKTEAIDLSKTME 144
Query: 65 TDSDHLPTTEIRVE 78
+ HLP E+ V
Sbjct: 145 EIALHLPDNELWVH 158
>sp|Q07292|KRAF1_CAEEL Raf homolog serine/threonine-protein kinase OS=Caenorhabditis
elegans GN=lin-45 PE=1 SV=2
Length = 813
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 26/40 (65%)
Query: 11 LLRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKPEMC 50
++ LP Q + V +R G+T +A+SK +K RN+ P++C
Sbjct: 86 MIMVHLPFDQHSRVEVRPGETARDAISKLLKKRNITPQLC 125
>sp|A9W4P8|EFG_METEP Elongation factor G OS=Methylobacterium extorquens (strain PA1)
GN=fusA PE=3 SV=1
Length = 691
Score = 33.1 bits (74), Expect = 0.46, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 27/50 (54%)
Query: 30 QTLLEALSKAMKLRNLKPEMCTAYDSNTGVSLQWDTDSDHLPTTEIRVEV 79
+TL + + KA++LR P +C + N GV D D+LP+ R E+
Sbjct: 239 ETLRKLVRKAVQLRAFHPVLCGSAFKNKGVQPLLDAVVDYLPSPADRGEI 288
>sp|B7L0Q8|EFG_METC4 Elongation factor G OS=Methylobacterium chloromethanicum (strain
CM4 / NCIMB 13688) GN=fusA PE=3 SV=1
Length = 691
Score = 33.1 bits (74), Expect = 0.46, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 27/50 (54%)
Query: 30 QTLLEALSKAMKLRNLKPEMCTAYDSNTGVSLQWDTDSDHLPTTEIRVEV 79
+TL + + KA++LR P +C + N GV D D+LP+ R E+
Sbjct: 239 ETLRKLVRKAVQLRAFHPVLCGSAFKNKGVQPLLDAVVDYLPSPADRGEI 288
>sp|B1LWS3|EFG_METRJ Elongation factor G OS=Methylobacterium radiotolerans (strain ATCC
27329 / DSM 1819 / JCM 2831) GN=fusA PE=3 SV=1
Length = 691
Score = 31.2 bits (69), Expect = 2.2, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 25/49 (51%)
Query: 31 TLLEALSKAMKLRNLKPEMCTAYDSNTGVSLQWDTDSDHLPTTEIRVEV 79
T+ + KA++LR P +C + N GV D D+LP+ R E+
Sbjct: 240 TMRTLVRKAVQLRAFHPVLCGSAFKNKGVQPLLDAVVDYLPSPADRGEI 288
>sp|B2AHA4|MIAB_CUPTR (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Cupriavidus taiwanensis (strain R1 / LMG 19424)
GN=miaB PE=3 SV=1
Length = 450
Score = 30.8 bits (68), Expect = 2.6, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Query: 15 QLPNQQ---RTSVHIRKGQTLLEALSKAMKLRNLKPEMCTAYDSNTGVSLQWDTDSDHL 70
LP Q R + +++G ++LE S +LR L+P+M + D G + D D D L
Sbjct: 263 HLPVQHASDRILMAMKRGYSVLEYKSIIRRLRALRPDMSMSSDFIVGFPGETDADFDKL 321
>sp|Q47Y80|MIAB_COLP3 (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681)
GN=miaB PE=3 SV=1
Length = 480
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 37/69 (53%), Gaps = 3/69 (4%)
Query: 21 RTSVHIRKGQTLLEALSKAMKLRNLKPEMCTAYDSNTGVSLQWDTDSDHLPTTEIRVEVM 80
R +++G T LE S+ KL+ ++PE+ + D G +TD D T ++ ++ +
Sbjct: 272 RILTQMKRGHTALEYKSQIRKLKKVRPELSMSSDFIIG--FPGETDEDFTATMDL-IKAV 328
Query: 81 EGNLALSSL 89
+ +L+ S +
Sbjct: 329 DFDLSFSFI 337
>sp|Q475N7|MIAB_CUPPJ (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Cupriavidus pinatubonensis (strain JMP134 / LMG 1197)
GN=miaB PE=3 SV=1
Length = 450
Score = 30.8 bits (68), Expect = 2.7, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Query: 15 QLPNQQ---RTSVHIRKGQTLLEALSKAMKLRNLKPEMCTAYDSNTGVSLQWDTDSDHL 70
LP Q R + +++G ++LE S +LR L+P+M + D G + D D D L
Sbjct: 263 HLPVQHASDRVLMAMKRGYSVLEYKSIIRRLRMLRPDMSMSSDFIVGFPGETDADFDKL 321
>sp|Q8Y206|MIAB_RALSO (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Ralstonia solanacearum (strain GMI1000) GN=miaB PE=3
SV=1
Length = 457
Score = 30.8 bits (68), Expect = 2.8, Method: Composition-based stats.
Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 5/75 (6%)
Query: 8 RGILLRAQLPNQQ---RTSVHIRKGQTLLEALSKAMKLRNLKPEMCTAYDSNTGVSLQWD 64
R ++ LP Q R + +++G T+LE S KLR ++P++ A D G +
Sbjct: 256 RKLVDHLHLPVQHGSDRILMAMKRGYTVLEYKSIIRKLRAIRPDISIATDFIVG--FPGE 313
Query: 65 TDSDHLPTTEIRVEV 79
TD+D T ++ E+
Sbjct: 314 TDADFAKTMDLVHEI 328
>sp|Q1LR87|MIAB_RALME (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Ralstonia metallidurans (strain CH34 / ATCC 43123 /
DSM 2839) GN=miaB PE=3 SV=1
Length = 450
Score = 30.4 bits (67), Expect = 3.1, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Query: 15 QLPNQQ---RTSVHIRKGQTLLEALSKAMKLRNLKPEMCTAYDSNTGVSLQWDTDSDHL 70
LP Q R +++G ++LE S +LR L+P+M + D G + D D D L
Sbjct: 263 HLPVQHASDRVLAGMKRGYSVLEYKSIIRRLRALRPDMSMSSDFIVGFPGETDADFDKL 321
>sp|Q15TR4|MIAB_PSEA6 (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Pseudoalteromonas atlantica (strain T6c / ATCC
BAA-1087) GN=miaB PE=3 SV=1
Length = 477
Score = 30.4 bits (67), Expect = 3.4, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Query: 26 IRKGQTLLEALSKAMKLRNLKPEMCTAYDSNTGVSLQWDTDSDHLPTTEIRVEVMEGNLA 85
+++G T +E SK KLR ++P + + D G +TD D T ++ ++ M+ +L+
Sbjct: 277 MKRGHTAIEYKSKIRKLRKIRPNLSMSSDFIIG--FPGETDDDFEATMDL-IQAMDFDLS 333
Query: 86 LS 87
S
Sbjct: 334 FS 335
>sp|B2UFP3|MIAB_RALPJ (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Ralstonia pickettii (strain 12J) GN=miaB PE=3 SV=1
Length = 456
Score = 30.0 bits (66), Expect = 3.8, Method: Composition-based stats.
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 5/68 (7%)
Query: 15 QLPNQQ---RTSVHIRKGQTLLEALSKAMKLRNLKPEMCTAYDSNTGVSLQWDTDSDHLP 71
LP Q R + +++G T+LE S KLR ++P + A D G +TD+D
Sbjct: 263 HLPVQHGSDRILMAMKRGYTVLEYKSSIRKLRAIRPNISIATDFIVG--FPGETDADFAK 320
Query: 72 TTEIRVEV 79
T ++ E+
Sbjct: 321 TMDLIHEI 328
>sp|B1XYX5|MIAB_LEPCP (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 /
SP-6) GN=miaB PE=3 SV=1
Length = 469
Score = 30.0 bits (66), Expect = 4.0, Method: Composition-based stats.
Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 5/64 (7%)
Query: 15 QLPNQQ---RTSVHIRKGQTLLEALSKAMKLRNLKPEMCTAYDSNTGVSLQWDTDSDHLP 71
LP Q R +++G T+LE S KLR ++P++ + D G +TD DH
Sbjct: 286 HLPVQHGSDRILSGMKRGYTVLEYKSTIRKLRAIRPDISLSTDFIVG--FPGETDDDHAR 343
Query: 72 TTEI 75
T ++
Sbjct: 344 TMKL 347
>sp|Q3JEH9|MIAB_NITOC (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB
11848) GN=miaB PE=3 SV=1
Length = 447
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Query: 26 IRKGQTLLEALSKAMKLRNLKPEMCTAYDSNTGVSLQWDTDSDHLPTTEIRVEV 79
+++G T+LE +K KLR ++P++ + D G L +T++D T + EV
Sbjct: 277 MKRGHTVLEYKAKLRKLRQVRPDISISSDFIVG--LPGETEADFQATLALVDEV 328
>sp|Q8P8B5|MIAB_XANCP (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Xanthomonas campestris pv. campestris (strain ATCC
33913 / NCPPB 528 / LMG 568) GN=miaB PE=3 SV=1
Length = 485
Score = 29.6 bits (65), Expect = 6.2, Method: Composition-based stats.
Identities = 15/43 (34%), Positives = 24/43 (55%)
Query: 26 IRKGQTLLEALSKAMKLRNLKPEMCTAYDSNTGVSLQWDTDSD 68
+++G T LE SK KLR ++P++ + D G + D D D
Sbjct: 316 MKRGYTALEFKSKIRKLRAVRPDISISSDFIVGFPGETDADFD 358
>sp|B0RRW2|MIAB_XANCB (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Xanthomonas campestris pv. campestris (strain B100)
GN=miaB PE=3 SV=1
Length = 485
Score = 29.6 bits (65), Expect = 6.2, Method: Composition-based stats.
Identities = 15/43 (34%), Positives = 24/43 (55%)
Query: 26 IRKGQTLLEALSKAMKLRNLKPEMCTAYDSNTGVSLQWDTDSD 68
+++G T LE SK KLR ++P++ + D G + D D D
Sbjct: 316 MKRGYTALEFKSKIRKLRAVRPDISISSDFIVGFPGETDADFD 358
>sp|Q4UVS2|MIAB_XANC8 (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Xanthomonas campestris pv. campestris (strain 8004)
GN=miaB PE=3 SV=1
Length = 485
Score = 29.6 bits (65), Expect = 6.2, Method: Composition-based stats.
Identities = 15/43 (34%), Positives = 24/43 (55%)
Query: 26 IRKGQTLLEALSKAMKLRNLKPEMCTAYDSNTGVSLQWDTDSD 68
+++G T LE SK KLR ++P++ + D G + D D D
Sbjct: 316 MKRGYTALEFKSKIRKLRAVRPDISISSDFIVGFPGETDADFD 358
>sp|Q87AP4|MIAB_XYLFT (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB OS=Xylella
fastidiosa (strain Temecula1 / ATCC 700964) GN=miaB PE=3
SV=2
Length = 497
Score = 29.3 bits (64), Expect = 6.6, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 24/41 (58%)
Query: 26 IRKGQTLLEALSKAMKLRNLKPEMCTAYDSNTGVSLQWDTD 66
+++G T LE SK KLR ++P++ + D G + DTD
Sbjct: 332 MKRGYTALEFKSKIRKLRAVRPDISISSDFIIGFPGESDTD 372
>sp|B0U4P1|MIAB_XYLFM (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB OS=Xylella
fastidiosa (strain M12) GN=miaB PE=3 SV=1
Length = 497
Score = 29.3 bits (64), Expect = 6.6, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 24/41 (58%)
Query: 26 IRKGQTLLEALSKAMKLRNLKPEMCTAYDSNTGVSLQWDTD 66
+++G T LE SK KLR ++P++ + D G + DTD
Sbjct: 332 MKRGYTALEFKSKIRKLRAVRPDISISSDFIIGFPGESDTD 372
>sp|B2I8U1|MIAB_XYLF2 (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB OS=Xylella
fastidiosa (strain M23) GN=miaB PE=3 SV=1
Length = 497
Score = 29.3 bits (64), Expect = 6.6, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 24/41 (58%)
Query: 26 IRKGQTLLEALSKAMKLRNLKPEMCTAYDSNTGVSLQWDTD 66
+++G T LE SK KLR ++P++ + D G + DTD
Sbjct: 332 MKRGYTALEFKSKIRKLRAVRPDISISSDFIIGFPGESDTD 372
>sp|Q9PEX2|MIAB_XYLFA (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB OS=Xylella
fastidiosa (strain 9a5c) GN=miaB PE=3 SV=1
Length = 497
Score = 29.3 bits (64), Expect = 6.9, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 24/41 (58%)
Query: 26 IRKGQTLLEALSKAMKLRNLKPEMCTAYDSNTGVSLQWDTD 66
+++G T LE SK KLR ++P++ + D G + DTD
Sbjct: 332 MKRGYTALEFKSKIRKLRAVRPDISISSDFIIGFPGESDTD 372
>sp|A1U494|MIAB_MARAV (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Marinobacter aquaeolei (strain ATCC 700491 / DSM
11845 / VT8) GN=miaB PE=3 SV=1
Length = 448
Score = 29.3 bits (64), Expect = 7.5, Method: Composition-based stats.
Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 5/64 (7%)
Query: 15 QLPNQQ---RTSVHIRKGQTLLEALSKAMKLRNLKPEMCTAYDSNTGVSLQWDTDSDHLP 71
LP Q R +++G T LE SK +LR ++P++ ++ S+ + +TD D
Sbjct: 265 HLPVQSGSDRILAAMKRGHTALEYKSKLRRLRKIRPDI--SFSSDFIIGFPGETDKDFED 322
Query: 72 TTEI 75
T ++
Sbjct: 323 TMKL 326
>sp|Q8EUX2|SYY_MYCPE Tyrosine--tRNA ligase OS=Mycoplasma penetrans (strain HF-2) GN=tyrS
PE=3 SV=1
Length = 411
Score = 29.3 bits (64), Expect = 7.8, Method: Composition-based stats.
Identities = 20/90 (22%), Positives = 49/90 (54%), Gaps = 7/90 (7%)
Query: 6 VPRGILLRAQLPNQQRTSVHIRKGQTLLEA----LSKAMKLRNLKPEMCTAYDSNTGVSL 61
V R +LL +L ++ + + KG+ ++EA S+ K+ + + E+ A + +
Sbjct: 265 VERFLLLLTELDDKTISDLCKEKGKKIVEAKKVLASELTKMIHGQEELDKAIEQSKAA-- 322
Query: 62 QWDTDSDHLPTTEIRVEVMEGNLALSSLLI 91
++ SD+LPT E++ + + +++++L+
Sbjct: 323 -FENASDNLPTYELKASDLNNDYSIANILV 351
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.132 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,719,587
Number of Sequences: 539616
Number of extensions: 966588
Number of successful extensions: 2893
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 2851
Number of HSP's gapped (non-prelim): 54
length of query: 93
length of database: 191,569,459
effective HSP length: 63
effective length of query: 30
effective length of database: 157,573,651
effective search space: 4727209530
effective search space used: 4727209530
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)