Query psy7980
Match_columns 93
No_of_seqs 63 out of 65
Neff 4.3
Searched_HMMs 46136
Date Fri Aug 16 23:45:38 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7980.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7980hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd01816 Raf_RBD Ubiquitin doma 100.0 9.8E-39 2.1E-43 209.5 7.0 70 11-80 1-74 (74)
2 cd01817 RGS12_RBD Ubiquitin do 100.0 1.9E-33 4.1E-38 184.0 7.2 69 11-79 1-69 (73)
3 PF02196 RBD: Raf-like Ras-bin 100.0 1.1E-31 2.3E-36 172.3 6.5 70 11-80 2-71 (71)
4 cd01760 RBD Ubiquitin-like dom 100.0 2.2E-29 4.8E-34 163.2 6.6 70 11-80 1-72 (72)
5 smart00455 RBD Raf-like Ras-bi 100.0 1.9E-28 4E-33 157.3 7.6 70 11-80 1-70 (70)
6 KOG0193|consensus 99.9 1.5E-23 3.2E-28 178.4 6.7 89 5-93 92-184 (678)
7 cd01818 TIAM1_RBD Ubiquitin do 98.6 4.4E-08 9.5E-13 65.0 4.5 36 13-48 3-38 (77)
8 cd00196 UBQ Ubiquitin-like pro 98.0 1.8E-05 3.8E-10 43.0 5.0 65 13-77 1-66 (69)
9 PF11470 TUG-UBL1: GLUT4 regul 97.2 0.0012 2.7E-08 42.0 5.3 49 14-64 1-49 (65)
10 cd01777 SNX27_RA Ubiquitin dom 96.1 0.0099 2.1E-07 40.3 4.0 44 11-54 3-49 (87)
11 cd01768 RA RA (Ras-associating 96.0 0.03 6.6E-07 35.5 5.6 44 11-54 1-49 (87)
12 PF00788 RA: Ras association ( 95.9 0.021 4.6E-07 35.7 4.9 44 9-52 2-51 (93)
13 smart00295 B41 Band 4.1 homolo 95.3 0.045 9.8E-07 38.3 5.1 46 9-54 3-49 (207)
14 smart00314 RA Ras association 94.7 0.17 3.6E-06 32.3 6.0 45 10-54 3-52 (90)
15 cd01787 GRB7_RA RA (RAS-associ 93.7 0.33 7.2E-06 32.7 6.1 71 9-84 2-73 (85)
16 PF09379 FERM_N: FERM N-termin 93.2 0.14 3.1E-06 31.6 3.4 41 14-54 1-42 (80)
17 PF00789 UBX: UBX domain; Int 91.7 2.1 4.6E-05 26.7 8.2 57 9-65 6-63 (82)
18 cd01763 Sumo Small ubiquitin-r 90.0 2.6 5.7E-05 27.1 6.9 48 9-56 11-58 (87)
19 cd01668 TGS_RelA_SpoT TGS_RelA 89.2 0.69 1.5E-05 26.6 3.4 40 12-55 1-40 (60)
20 PF02824 TGS: TGS domain; Int 86.1 1.4 3.1E-05 26.8 3.6 26 12-39 1-26 (60)
21 cd01796 DDI1_N DNA damage indu 85.2 2.9 6.3E-05 25.9 4.8 44 12-55 1-46 (71)
22 PRK05950 sdhB succinate dehydr 84.4 2.4 5.2E-05 31.8 4.8 68 19-87 17-96 (232)
23 PF14847 Ras_bdg_2: Ras-bindin 84.0 2.3 5E-05 29.3 4.2 44 11-54 2-47 (105)
24 PRK13552 frdB fumarate reducta 83.8 2.9 6.2E-05 32.0 5.1 67 20-87 24-101 (239)
25 PLN02593 adrenodoxin-like ferr 82.1 2.6 5.6E-05 29.0 3.9 43 12-54 3-51 (117)
26 PRK08640 sdhB succinate dehydr 79.3 5.1 0.00011 30.9 5.1 66 20-87 23-106 (249)
27 TIGR00384 dhsB succinate dehyd 79.3 3.9 8.4E-05 30.4 4.3 70 16-87 11-92 (220)
28 cd01794 DC_UbP_C dendritic cel 79.2 6.6 0.00014 24.4 4.8 43 13-55 2-45 (70)
29 PRK12576 succinate dehydrogena 78.6 9.9 0.00021 29.7 6.6 83 4-87 2-105 (279)
30 PF10790 DUF2604: Protein of U 78.4 9.8 0.00021 25.1 5.5 64 17-80 3-71 (76)
31 cd01807 GDX_N ubiquitin-like d 73.8 16 0.00034 22.4 5.4 44 12-55 3-47 (74)
32 cd00207 fer2 2Fe-2S iron-sulfu 73.5 4.9 0.00011 24.4 3.0 23 16-38 4-26 (84)
33 PRK07570 succinate dehydrogena 73.4 9.5 0.00021 29.6 5.2 68 20-87 20-111 (250)
34 PRK12386 fumarate reductase ir 73.1 5.7 0.00012 30.9 3.9 66 20-87 20-98 (251)
35 PF13085 Fer2_3: 2Fe-2S iron-s 72.7 15 0.00033 25.3 5.6 67 20-87 19-99 (110)
36 PF11976 Rad60-SLD: Ubiquitin- 72.0 16 0.00035 21.9 5.0 44 12-55 3-47 (72)
37 PTZ00490 Ferredoxin superfamil 68.0 13 0.00028 26.8 4.6 47 9-55 35-88 (143)
38 PF04106 APG5: Autophagy prote 67.5 4.4 9.5E-05 30.1 2.1 35 9-43 110-151 (197)
39 KOG3784|consensus 66.7 12 0.00026 31.7 4.7 39 10-48 108-146 (407)
40 PF11543 UN_NPL4: Nuclear pore 66.0 33 0.00071 22.1 5.8 46 9-55 4-49 (80)
41 PF14804 Jag_N: Jag N-terminus 65.8 7.1 0.00015 23.7 2.5 27 28-54 3-29 (52)
42 PF00111 Fer2: 2Fe-2S iron-sul 65.4 7.3 0.00016 23.7 2.5 39 17-55 3-48 (78)
43 cd01781 AF6_RA_repeat2 Ubiquit 65.3 25 0.00055 24.2 5.4 44 11-54 3-50 (100)
44 TIGR02008 fdx_plant ferredoxin 63.0 14 0.00031 24.1 3.7 28 12-39 5-32 (97)
45 PF08827 DUF1805: Domain of un 62.9 2.8 6.1E-05 26.6 0.3 15 24-38 44-58 (59)
46 PTZ00044 ubiquitin; Provisiona 61.9 33 0.00071 20.7 5.5 43 12-54 3-46 (76)
47 PRK12385 fumarate reductase ir 61.8 13 0.00027 28.5 3.8 63 20-87 25-101 (244)
48 PF02017 CIDE-N: CIDE-N domain 61.5 18 0.00039 23.8 4.0 49 29-77 20-68 (78)
49 PF11275 DUF3077: Protein of u 61.3 9.4 0.0002 25.2 2.6 24 18-41 12-35 (79)
50 smart00166 UBX Domain present 58.4 43 0.00092 20.9 8.0 52 11-62 6-57 (80)
51 cd01806 Nedd8 Nebb8-like ubiq 58.4 37 0.0008 20.1 5.9 44 11-54 2-45 (76)
52 cd06406 PB1_P67 A PB1 domain i 58.3 50 0.0011 21.9 5.7 42 11-54 4-46 (80)
53 PF10531 SLBB: SLBB domain; I 57.9 6.1 0.00013 23.6 1.2 19 21-39 11-29 (59)
54 PF02641 DUF190: Uncharacteriz 57.4 40 0.00087 22.3 5.2 64 11-82 5-73 (101)
55 cd01767 UBX UBX (ubiquitin reg 56.6 20 0.00044 22.1 3.5 32 11-42 4-35 (77)
56 PLN00129 succinate dehydrogena 56.4 39 0.00084 26.8 5.7 67 20-87 62-140 (276)
57 cd01802 AN1_N ubiquitin-like d 55.1 61 0.0013 21.7 6.3 47 9-55 27-74 (103)
58 PF15016 DUF4520: Domain of un 53.8 37 0.00081 22.7 4.5 33 9-41 48-80 (85)
59 PTZ00038 ferredoxin; Provision 53.6 24 0.00051 26.8 4.0 28 11-39 97-124 (191)
60 PF00794 PI3K_rbd: PI3-kinase 50.4 42 0.0009 22.0 4.4 34 9-42 16-50 (106)
61 PRK08364 sulfur carrier protei 49.9 59 0.0013 20.0 6.2 40 12-56 5-46 (70)
62 smart00266 CAD Domains present 49.9 33 0.00072 22.5 3.7 46 28-73 17-62 (74)
63 TIGR02007 fdx_isc ferredoxin, 49.8 19 0.00042 24.1 2.7 29 22-54 16-54 (110)
64 COG3377 Uncharacterized conser 49.7 9.1 0.0002 26.5 1.1 15 24-38 80-94 (95)
65 PRK12577 succinate dehydrogena 49.1 50 0.0011 26.3 5.3 68 19-87 18-106 (329)
66 cd01783 DAGK_delta_RA Ubiquiti 48.9 70 0.0015 22.0 5.4 34 21-54 18-51 (97)
67 cd01772 SAKS1_UBX SAKS1-like U 48.0 35 0.00076 21.5 3.6 35 10-44 5-39 (79)
68 COG0479 FrdB Succinate dehydro 47.7 1.2E+02 0.0026 23.7 7.1 75 12-87 7-97 (234)
69 cd01784 rasfadin_RA Ubiquitin- 47.5 39 0.00085 22.9 3.9 41 14-54 6-49 (87)
70 smart00213 UBQ Ubiquitin homol 46.6 53 0.0011 18.4 5.0 42 11-53 2-43 (64)
71 PRK01777 hypothetical protein; 46.4 30 0.00064 23.2 3.2 29 16-48 12-41 (95)
72 COG2818 Tag 3-methyladenine DN 46.2 15 0.00032 28.1 1.8 17 30-46 140-156 (188)
73 cd01615 CIDE_N CIDE_N domain, 46.0 42 0.00092 22.1 3.8 35 28-62 19-53 (78)
74 PRK11872 antC anthranilate dio 45.9 31 0.00067 27.0 3.7 27 12-38 5-31 (340)
75 cd01776 Rin1_RA Ubiquitin doma 45.4 77 0.0017 21.6 5.0 56 11-66 1-63 (87)
76 PF07660 STN: Secretin and Ton 45.2 15 0.00033 20.8 1.4 27 20-47 14-40 (52)
77 PF14848 HU-DNA_bdg: DNA-bindi 44.2 17 0.00037 25.0 1.8 26 14-39 92-117 (124)
78 cd01793 Fubi Fubi ubiquitin-li 44.1 67 0.0015 19.5 4.4 37 19-55 8-45 (74)
79 PRK09189 uroporphyrinogen-III 43.2 17 0.00038 26.6 1.8 30 26-55 123-152 (240)
80 cd01775 CYR1_RA Ubiquitin doma 41.6 88 0.0019 21.6 5.0 38 11-48 4-41 (97)
81 cd01797 NIRF_N amino-terminal 41.2 90 0.002 19.6 5.3 45 11-55 2-49 (78)
82 KOG0248|consensus 39.4 30 0.00064 31.8 2.9 28 12-39 629-656 (936)
83 PF03658 Ub-RnfH: RnfH family 39.2 40 0.00087 22.5 2.9 23 16-38 9-32 (84)
84 TIGR00624 tag DNA-3-methyladen 39.2 31 0.00067 25.8 2.6 17 30-46 136-152 (179)
85 PRK05659 sulfur carrier protei 37.4 62 0.0014 19.2 3.4 32 18-55 6-37 (66)
86 cd06535 CIDE_N_CAD CIDE_N doma 37.2 62 0.0013 21.4 3.5 34 28-61 19-52 (77)
87 cd01798 parkin_N amino-termina 37.0 94 0.002 18.6 4.8 39 15-53 4-42 (70)
88 PF13510 Fer2_4: 2Fe-2S iron-s 36.5 26 0.00057 22.3 1.7 17 23-39 12-28 (82)
89 PF12053 DUF3534: Domain of un 35.0 53 0.0011 24.0 3.2 52 20-71 10-69 (145)
90 cd01800 SF3a120_C Ubiquitin-li 34.7 97 0.0021 19.0 4.0 38 18-55 6-44 (76)
91 CHL00134 petF ferredoxin; Vali 34.2 61 0.0013 21.3 3.2 26 13-38 5-33 (99)
92 cd01778 RASSF1_RA Ubiquitin-li 34.0 74 0.0016 21.9 3.6 43 11-53 8-52 (96)
93 COG1724 Predicted RNA binding 33.5 44 0.00095 21.7 2.3 30 16-45 35-65 (66)
94 cd07051 BMC_like_1_repeat1 Bac 33.0 86 0.0019 22.2 3.9 38 17-54 30-67 (111)
95 cd01809 Scythe_N Ubiquitin-lik 32.8 1.1E+02 0.0023 17.9 5.5 43 12-54 3-46 (72)
96 PRK10353 3-methyl-adenine DNA 32.5 36 0.00077 25.7 2.0 16 31-46 140-155 (187)
97 PRK05752 uroporphyrinogen-III 32.2 65 0.0014 24.0 3.4 32 23-54 132-163 (255)
98 TIGR01941 nqrF NADH:ubiquinone 31.4 62 0.0014 26.0 3.4 44 11-54 31-80 (405)
99 cd01792 ISG15_repeat1 ISG15 ub 31.0 1.3E+02 0.0029 18.5 4.3 38 12-49 5-42 (80)
100 PRK07569 bidirectional hydroge 30.3 61 0.0013 24.3 3.0 25 12-39 4-28 (234)
101 KOG2378|consensus 29.9 1.7E+02 0.0036 25.9 5.8 70 9-78 235-309 (573)
102 cd06537 CIDE_N_B CIDE_N domain 29.9 1.7E+02 0.0038 19.5 5.3 35 20-55 11-45 (81)
103 cd06536 CIDE_N_ICAD CIDE_N dom 29.5 1.5E+02 0.0033 19.6 4.5 46 28-73 19-66 (80)
104 cd01789 Alp11_N Ubiquitin-like 29.5 1.5E+02 0.0033 18.8 6.3 57 22-78 15-79 (84)
105 PF00240 ubiquitin: Ubiquitin 28.9 1.3E+02 0.0027 17.6 4.8 40 17-56 3-42 (69)
106 cd01616 TGS The TGS domain, na 28.2 1E+02 0.0022 16.3 3.4 25 13-39 2-26 (60)
107 PRK14659 acpS 4'-phosphopantet 28.0 81 0.0017 21.4 3.1 38 30-67 56-97 (122)
108 PRK00070 acpS 4'-phosphopantet 27.3 67 0.0014 21.2 2.5 26 30-55 53-81 (126)
109 TIGR03193 4hydroxCoAred 4-hydr 26.9 82 0.0018 22.9 3.1 63 18-81 7-77 (148)
110 PRK00801 hypothetical protein; 26.7 1.1E+02 0.0024 23.1 3.8 36 14-54 139-178 (201)
111 PRK05863 sulfur carrier protei 26.5 1.5E+02 0.0033 17.8 4.6 44 25-75 11-56 (65)
112 PRK14663 acpS 4'-phosphopantet 25.9 1.5E+02 0.0032 19.9 4.0 34 31-64 48-85 (116)
113 COG4379 Mu-like prophage tail 25.6 79 0.0017 26.7 3.1 35 21-55 142-180 (386)
114 PRK08811 uroporphyrinogen-III 25.4 87 0.0019 24.0 3.1 27 28-54 145-171 (266)
115 COG1993 PII-like signaling pro 25.3 97 0.0021 21.8 3.1 39 9-54 6-44 (109)
116 cd01770 p47_UBX p47-like ubiqu 25.2 1.3E+02 0.0028 19.1 3.5 33 11-43 6-38 (79)
117 PRK11433 aldehyde oxidoreducta 25.1 87 0.0019 24.2 3.1 68 12-81 52-127 (217)
118 cd00754 MoaD Ubiquitin domain 24.9 1.6E+02 0.0035 17.5 5.9 51 21-76 17-72 (80)
119 PF13834 DUF4193: Domain of un 24.8 55 0.0012 22.7 1.7 23 65-90 49-71 (99)
120 KOG4132|consensus 24.8 66 0.0014 25.8 2.4 27 28-54 140-166 (260)
121 cd00565 ThiS ThiaminS ubiquiti 24.3 1.4E+02 0.0029 17.8 3.3 47 24-76 9-57 (65)
122 PRK00285 ihfA integration host 24.1 35 0.00076 22.2 0.7 22 20-41 75-96 (99)
123 cd01810 ISG15_repeat2 ISG15 ub 23.9 1.8E+02 0.0038 17.6 4.9 42 14-55 3-45 (74)
124 PF03352 Adenine_glyco: Methyl 23.8 60 0.0013 24.2 1.9 18 29-46 133-150 (179)
125 TIGR00568 alkb DNA alkylation 23.6 2E+02 0.0043 21.0 4.6 40 32-71 79-118 (169)
126 TIGR02653 Lon_rel_chp conserve 23.5 69 0.0015 28.8 2.5 43 9-51 562-604 (675)
127 TIGR01683 thiS thiamine biosyn 23.2 1.5E+02 0.0032 17.6 3.3 47 23-75 7-55 (64)
128 PF05924 SAMP: SAMP Motif; In 22.9 25 0.00053 18.0 -0.2 13 31-43 5-17 (20)
129 PRK06259 succinate dehydrogena 22.8 1.9E+02 0.0041 23.7 4.8 64 17-86 18-92 (486)
130 cd06538 CIDE_N_FSP27 CIDE_N do 22.7 2.3E+02 0.005 18.8 4.4 34 28-62 19-52 (79)
131 cd01804 midnolin_N Ubiquitin-l 22.7 2E+02 0.0043 17.8 5.6 45 11-55 3-48 (78)
132 TIGR00516 acpS holo-[acyl-carr 22.7 1.1E+02 0.0024 20.7 3.0 28 31-58 53-83 (121)
133 smart00666 PB1 PB1 domain. Pho 22.5 1.9E+02 0.0041 17.4 5.9 54 12-66 4-58 (81)
134 PF13590 DUF4136: Domain of un 22.4 65 0.0014 21.4 1.7 19 30-48 38-56 (151)
135 PF10671 TcpQ: Toxin co-regula 22.1 93 0.002 19.7 2.4 22 25-46 5-26 (84)
136 PF13656 RNA_pol_L_2: RNA poly 22.1 1.2E+02 0.0027 19.3 2.9 21 22-42 45-65 (77)
137 cd01803 Ubiquitin Ubiquitin. U 22.1 1.8E+02 0.0039 17.0 5.5 43 12-54 3-46 (76)
138 cd01774 Faf1_like2_UBX Faf1 ik 21.9 2.3E+02 0.0051 18.2 4.4 39 9-48 4-42 (85)
139 PF00817 IMS: impB/mucB/samB f 21.8 67 0.0014 21.9 1.7 15 24-38 45-59 (149)
140 cd04938 TGS_Obg-like TGS_Obg-l 21.3 1.9E+02 0.0042 18.3 3.7 31 11-41 1-43 (76)
141 KOG2894|consensus 21.0 1E+02 0.0022 25.4 2.9 23 19-41 198-220 (331)
142 PF14044 NETI: NETI protein 20.9 1.3E+02 0.0028 19.0 2.7 24 24-48 2-25 (57)
143 PRK07322 adenine phosphoribosy 20.8 1.2E+02 0.0027 21.7 3.0 46 26-85 130-176 (178)
144 PRK14658 acpS 4'-phosphopantet 20.3 1.3E+02 0.0029 20.6 3.0 31 31-62 53-83 (115)
145 PRK05464 Na(+)-translocating N 20.3 1.3E+02 0.0029 24.1 3.4 44 11-54 35-84 (409)
No 1
>cd01816 Raf_RBD Ubiquitin domain of Raf serine/threonine kinases. The Raf serine/threonine kinases are composed of three conserved regions, CR1, CR2 and CR3. CR1 has two Ras binding domains (RBD and CRD), CR2 is a serine/threonine rich domain and CR3 is the catalytic kinase domain. The RBD of Raf is structurally similar to ubiquitin with little of no sequence similarity.The Raf signalling pathway plays an important role in the proliferation and survival of tumor cells.
Probab=100.00 E-value=9.8e-39 Score=209.47 Aligned_cols=70 Identities=46% Similarity=0.796 Sum_probs=66.3
Q ss_pred eEEEEcCCCCeeeEEecCCCcHHHHHHHHHHhcCCCCCceEEEeC-CC---CcccccCCCCCCcCCceeEEEee
Q psy7980 11 LLRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKPEMCTAYDS-NT---GVSLQWDTDSDHLPTTEIRVEVM 80 (93)
Q Consensus 11 ~irv~LPn~QrT~V~vrpG~tlrdaL~Kalk~R~L~~~~C~Vy~~-~~---~~~i~wdtD~~~L~~eEl~Ve~l 80 (93)
+|||||||||||+|+||||||+||||+||||+|||+||||+||+. ++ +.+++||||++.|+||||+||++
T Consensus 1 ~ir~~LPnqQrT~V~vrpG~tl~daL~KaLk~R~l~pe~C~V~~~~~~~~~~~~i~W~td~~~L~geEL~V~~l 74 (74)
T cd01816 1 LIRVFLPNKQRTVVNVRPGMTLRDALAKALKVRGLQPECCAVFRLGDGSSKKLRIDWDTDISSLIGEELQVEVL 74 (74)
T ss_pred CeeEECCCCCeEEEEecCCcCHHHHHHHHHHHcCCChhHeEEEEcCCCcccccccchhhhhhhccCceEEEEeC
Confidence 589999999999999999999999999999999999999999995 34 69999999999999999999985
No 2
>cd01817 RGS12_RBD Ubiquitin domain of RGS12 and RGS14. RGS12 (regulator of G signalling 12), and RGS14, are members of a family of GTPase-activating proteins (GAP's) specific for the G-alpha subunit, which act as key inhibitors of G-protein-mediated cell responses in eukaryotes. Their domain architecture includes tandem RBD domains as well as PDZ , PTB, and RGS, and GoLoco domains.
Probab=100.00 E-value=1.9e-33 Score=184.00 Aligned_cols=69 Identities=28% Similarity=0.347 Sum_probs=67.0
Q ss_pred eEEEEcCCCCeeeEEecCCCcHHHHHHHHHHhcCCCCCceEEEeCCCCcccccCCCCCCcCCceeEEEe
Q psy7980 11 LLRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKPEMCTAYDSNTGVSLQWDTDSDHLPTTEIRVEV 79 (93)
Q Consensus 11 ~irv~LPn~QrT~V~vrpG~tlrdaL~Kalk~R~L~~~~C~Vy~~~~~~~i~wdtD~~~L~~eEl~Ve~ 79 (93)
++||||||||+|+|++|||+||+|+|+|+||+|||++++|.||+.+++++|+||||++.|+|+||+||-
T Consensus 1 ~crV~LPdg~~T~V~vrpG~ti~d~L~kllekRgl~~~~~~vf~~g~~k~l~~~qD~~~L~~~El~vE~ 69 (73)
T cd01817 1 LCRVILPDGSTTVVPTRPGESIRDLLSGLCEKRGINYAAVDLFLVGGDKPLVLDQDSSVLAGQEVRLEK 69 (73)
T ss_pred CcEEECCCCCeEEEEecCCCCHHHHHHHHHHHcCCChhHEEEEEecCCcccccCCccceeeccEEEEEE
Confidence 589999999999999999999999999999999999999999998888999999999999999999985
No 3
>PF02196 RBD: Raf-like Ras-binding domain; InterPro: IPR003116 This is the Ras-binding domain found in proteins related to Ras. It is found in association with the PE-bind and pkinase domains.; GO: 0005057 receptor signaling protein activity, 0007165 signal transduction; PDB: 1RFA_A 1C1Y_B 3KUD_B 1GUA_B 3KUC_B 2L05_A 3NY5_D 1RRB_A 1WFY_A 1WXM_A.
Probab=99.97 E-value=1.1e-31 Score=172.29 Aligned_cols=70 Identities=47% Similarity=0.682 Sum_probs=63.9
Q ss_pred eEEEEcCCCCeeeEEecCCCcHHHHHHHHHHhcCCCCCceEEEeCCCCcccccCCCCCCcCCceeEEEee
Q psy7980 11 LLRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKPEMCTAYDSNTGVSLQWDTDSDHLPTTEIRVEVM 80 (93)
Q Consensus 11 ~irv~LPn~QrT~V~vrpG~tlrdaL~Kalk~R~L~~~~C~Vy~~~~~~~i~wdtD~~~L~~eEl~Ve~l 80 (93)
++||||||||+|+|+||||+|++|||+|+|++|||.+++|.||+.+.+++++||+|++.|+|||++||..
T Consensus 2 ~~~v~LP~~q~t~V~vrpg~ti~d~L~~~~~kr~L~~~~~~V~~~~~~k~l~~~~d~~~L~~~El~ve~~ 71 (71)
T PF02196_consen 2 TCRVHLPNGQRTVVQVRPGMTIRDALSKACKKRGLNPECCDVRLVGEKKPLDWDQDSSSLPGEELRVEKR 71 (71)
T ss_dssp EEEEEETTTEEEEEEE-TTSBHHHHHHHHHHTTT--CCCEEEEEEEEEEEE-TTSBGGGGTTSEEEEEES
T ss_pred eEEEECCCCCEEEEEEcCCCCHHHHHHHHHHHcCCCHHHEEEEEcCCCccccCCCceeeecCCEEEEEeC
Confidence 6899999999999999999999999999999999999999999988999999999999999999999973
No 4
>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases. The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.
Probab=99.96 E-value=2.2e-29 Score=163.22 Aligned_cols=70 Identities=41% Similarity=0.591 Sum_probs=65.7
Q ss_pred eEEEEcCCCCeeeEEecCCCcHHHHHHHHHHhcCCCCCceEEEeCCCC--cccccCCCCCCcCCceeEEEee
Q psy7980 11 LLRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKPEMCTAYDSNTG--VSLQWDTDSDHLPTTEIRVEVM 80 (93)
Q Consensus 11 ~irv~LPn~QrT~V~vrpG~tlrdaL~Kalk~R~L~~~~C~Vy~~~~~--~~i~wdtD~~~L~~eEl~Ve~l 80 (93)
++||||||||+|+|+||||+|++|+|+|+||+|||.|++|.||..+.. ++++||+|++.|+|+||+||.+
T Consensus 1 ~~~V~LPng~~t~V~vrpg~ti~d~L~~~c~kr~l~~~~~~v~~~~~~~~~~~~~~~d~~~L~~~El~Ve~~ 72 (72)
T cd01760 1 LCRVYLPNGQRTVVPVRPGMSVRDVLAKACKKRGLNPECCDVFLLGLDEKKPLDLDTDSSSLAGEELEVEPL 72 (72)
T ss_pred CEEEECcCCCeEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEecCCCcCCcCchhhhhhhcCCEEEEEeC
Confidence 489999999999999999999999999999999999999999995433 9999999999999999999863
No 5
>smart00455 RBD Raf-like Ras-binding domain.
Probab=99.95 E-value=1.9e-28 Score=157.26 Aligned_cols=70 Identities=34% Similarity=0.516 Sum_probs=67.6
Q ss_pred eEEEEcCCCCeeeEEecCCCcHHHHHHHHHHhcCCCCCceEEEeCCCCcccccCCCCCCcCCceeEEEee
Q psy7980 11 LLRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKPEMCTAYDSNTGVSLQWDTDSDHLPTTEIRVEVM 80 (93)
Q Consensus 11 ~irv~LPn~QrT~V~vrpG~tlrdaL~Kalk~R~L~~~~C~Vy~~~~~~~i~wdtD~~~L~~eEl~Ve~l 80 (93)
+++|||||||+|+|++|||+|++|+|+++|++|||.|++|.||..+.+++++|++|++.|+|+|+++|.+
T Consensus 1 ~~~v~LP~~~~~~V~vrpg~tl~e~L~~~~~kr~l~~~~~~v~~~g~~k~ldl~~~~~~l~~~el~ve~~ 70 (70)
T smart00455 1 TCKVHLPDNQRTVVKVRPGKTVRDALAKALKKRGLNPECCVVRLRGEKKPLDLNQPISSLDGQELVVEEL 70 (70)
T ss_pred CeEEECCCCCEEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEcCCCcceecCCccccccCceEEEEeC
Confidence 4799999999999999999999999999999999999999999988999999999999999999999963
No 6
>KOG0193|consensus
Probab=99.89 E-value=1.5e-23 Score=178.35 Aligned_cols=89 Identities=33% Similarity=0.495 Sum_probs=83.9
Q ss_pred cCCCCceEEEEcCCCCeeeEEecCCCcHHHHHHHHHHhcCCCCCceEEEeC----CCCcccccCCCCCCcCCceeEEEee
Q psy7980 5 LVPRGILLRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKPEMCTAYDS----NTGVSLQWDTDSDHLPTTEIRVEVM 80 (93)
Q Consensus 5 ~~p~~~~irv~LPn~QrT~V~vrpG~tlrdaL~Kalk~R~L~~~~C~Vy~~----~~~~~i~wdtD~~~L~~eEl~Ve~l 80 (93)
++.+.+..+|||||+|+|.|+|+.|++++||++|++++|+++|+||+||+. +.+..++||+|+++|.|||++||++
T Consensus 92 ~s~~~~~~~v~Lpn~q~t~v~~~~g~s~~d~~~k~l~~r~~tP~~c~v~~~~~~~~~r~~~~~~~~~~~l~geE~~ve~l 171 (678)
T KOG0193|consen 92 PSRKFPTKRVHLPNKQRTVVSVRSGVSVRDSLLKALKKRGLTPDCCVVFRSLLTKGRRTRLPWDTIASPLDGEELHVEPL 171 (678)
T ss_pred ccccCCceEEeccCcceeEEEeecCCccchHHHhhhhhccCCCccceeehhhhhhccccccCcccCCCCCCccceeeeec
Confidence 344577899999999999999999999999999999999999999999993 7888999999999999999999999
Q ss_pred ccccccccccccC
Q psy7980 81 EGNLALSSLLIRS 93 (93)
Q Consensus 81 d~~p~~~h~f~R~ 93 (93)
+++|+++|||+|.
T Consensus 172 ~~vpl~~H~~~rk 184 (678)
T KOG0193|consen 172 ENVPLTTHNFVRK 184 (678)
T ss_pred cCCCccceeeeec
Confidence 9999999999984
No 7
>cd01818 TIAM1_RBD Ubiquitin domain of Tiam1 guanine nucleotide exchange factor. Tiam1 (T lymphoma invasion and metastasis 1) a guanine nucleotide exchange factor that activates Rac, is an important regulator of Rho GTPase functions in tumor cells including regulation of cell shape and invasiveness in epithelial cells and fibroblasts. TIAM1 has an RBD (Ras-binding domain) similar to that of Raf kinase as well as PH (pleckstrin homology), PDZ, and RhoGEF domains.
Probab=98.64 E-value=4.4e-08 Score=65.05 Aligned_cols=36 Identities=28% Similarity=0.388 Sum_probs=34.8
Q ss_pred EEEcCCCCeeeEEecCCCcHHHHHHHHHHhcCCCCC
Q psy7980 13 RAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKPE 48 (93)
Q Consensus 13 rv~LPn~QrT~V~vrpG~tlrdaL~Kalk~R~L~~~ 48 (93)
.|+|||+|+..|.+|||||+.|.|+.|+++|||.|.
T Consensus 3 ~V~lPn~~~~~v~vrp~~tv~dvLe~aCk~~~ldp~ 38 (77)
T cd01818 3 WVCLPDNQPVLTYLRPGMSVEDFLESACKRKQLDPM 38 (77)
T ss_pred EEECCCCceEEEEECCCCCHHHHHHHHHHhcCCChh
Confidence 589999999999999999999999999999999887
No 8
>cd00196 UBQ Ubiquitin-like proteins. Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.
Probab=98.03 E-value=1.8e-05 Score=43.02 Aligned_cols=65 Identities=15% Similarity=0.089 Sum_probs=51.1
Q ss_pred EEEcCCCCeeeEEecCCCcHHHHHHHHHHhcCCCCCceEEEeC-CCCcccccCCCCCCcCCceeEE
Q psy7980 13 RAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKPEMCTAYDS-NTGVSLQWDTDSDHLPTTEIRV 77 (93)
Q Consensus 13 rv~LPn~QrT~V~vrpG~tlrdaL~Kalk~R~L~~~~C~Vy~~-~~~~~i~wdtD~~~L~~eEl~V 77 (93)
+|++|+++...+.+.++.|+.+.+.+++++.|..++.+.+|.. +....-.|..+.....|.++.+
T Consensus 1 ~v~~~~~~~~~~~~~~~~tv~~l~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~ 66 (69)
T cd00196 1 KVKLNDGKTVELLVPSGTTVADLKEKLAKKLGLPPEQQRLLVNGKILPDSLTLEDYGLQDGDELVL 66 (69)
T ss_pred CeEecCCCEEEEEcCCCCcHHHHHHHHHHHHCcChHHeEEEECCeECCCCCcHHHcCCCCCCEEEE
Confidence 4788999999999999999999999999999999999999884 2333333434556666777665
No 9
>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly. TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.
Probab=97.18 E-value=0.0012 Score=42.01 Aligned_cols=49 Identities=24% Similarity=0.217 Sum_probs=34.2
Q ss_pred EEcCCCCeeeEEecCCCcHHHHHHHHHHhcCCCCCceEEEeCCCCcccccC
Q psy7980 14 AQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKPEMCTAYDSNTGVSLQWD 64 (93)
Q Consensus 14 v~LPn~QrT~V~vrpG~tlrdaL~Kalk~R~L~~~~C~Vy~~~~~~~i~wd 64 (93)
+.-||++|..|.|.||+++.|.|..||++-||.++.+.....+ +++|.+
T Consensus 1 vi~~~~rr~~vkvtp~~~l~~VL~eac~k~~l~~~~~~L~h~~--k~ldls 49 (65)
T PF11470_consen 1 VICYNFRRFKVKVTPNTTLNQVLEEACKKFGLDPSSYDLKHNN--KPLDLS 49 (65)
T ss_dssp EE-TTS-EEEE---TTSBHHHHHHHHHHHTT--GGG-EEEETT--EEESSS
T ss_pred CCccCCcEEEEEECCCCCHHHHHHHHHHHcCCCccceEEEECC--EEeccc
Confidence 3468999999999999999999999999999999977777654 445544
No 10
>cd01777 SNX27_RA Ubiquitin domain of SNX27 (sorting nexin protein 27). SNX27_RA SNX27 (sorting nexin protein 27) belongs to a large family of endosome-localized proteins related to sorting nexin1 which is implicated in regulating membrane traffic. The domain architecture of SNX27 includes an amino-terminal PDZ domain, a PX (PhoX homologous) domain, and a carboxy-terminal RA (RAS-associated) domain.
Probab=96.09 E-value=0.0099 Score=40.28 Aligned_cols=44 Identities=18% Similarity=0.306 Sum_probs=39.7
Q ss_pred eEEEEcCCCCeeeEEecCCCcHHHHHHHHHHhcCCCCC---ceEEEe
Q psy7980 11 LLRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKPE---MCTAYD 54 (93)
Q Consensus 11 ~irv~LPn~QrT~V~vrpG~tlrdaL~Kalk~R~L~~~---~C~Vy~ 54 (93)
-++|+||||++-+|.++--.+..+.+.++.++-||+-+ .|+.|.
T Consensus 3 ~L~V~Lpdg~~i~V~v~~s~~a~~Vleav~~kl~L~~e~~~YFaLFe 49 (87)
T cd01777 3 ELRIALPDKATVTVRVRKNATTDQVYQALVAKAGMDSYTQNYFALFE 49 (87)
T ss_pred EEEEEccCCCEEEEEEEEcccHHHHHHHHHHHhCCCHHHHhheeeeE
Confidence 48999999999999999999999999999999999877 455555
No 11
>cd01768 RA RA (Ras-associating) ubiquitin domain. The RA (Ras-associating) domain is structurally similar to ubiquitin and is present in one or two copies in a number of signalling molecules that bind and regulate a small GTPase called Ras or the Ras-related GTPases, Ral and Rap. RA-containing proteins include RalGDS, AF6, RIN1, RASSF1, SNX27, CYR1, STE50, and phospholipase C epsilon.
Probab=95.96 E-value=0.03 Score=35.47 Aligned_cols=44 Identities=18% Similarity=0.273 Sum_probs=39.2
Q ss_pred eEEEEcCC---CCeeeEEecCCCcHHHHHHHHHHhcCCC--CCceEEEe
Q psy7980 11 LLRAQLPN---QQRTSVHIRKGQTLLEALSKAMKLRNLK--PEMCTAYD 54 (93)
Q Consensus 11 ~irv~LPn---~QrT~V~vrpG~tlrdaL~Kalk~R~L~--~~~C~Vy~ 54 (93)
.||||..+ ++..+|.|.++.|.+|.+..+|++-++. ++.+..|-
T Consensus 1 ~ikV~~~~~~~~~~kti~V~~~~t~~~Vi~~~l~k~~l~~~~~~y~L~e 49 (87)
T cd01768 1 VLRVYPEDPSGGTYKTLRVSKDTTAQDVIQQLLKKFGLDDDPEDYALVE 49 (87)
T ss_pred CEEEeCCcCCCccEEEEEECCCCCHHHHHHHHHHHhCCcCCcccEEEEE
Confidence 48999999 9999999999999999999999999997 55666665
No 12
>PF00788 RA: Ras association (RalGDS/AF-6) domain; InterPro: IPR000159 Proteins with this domain are mostly RasGTP effectors and include guanine-nucleotide releasing factor in mammals []. This factor stimulates the dissociation of GDP from the Ras-related RALA and RALB GTPases, which allows GTP binding and activation of the GTPases. It interacts and acts as an effector molecule for R-ras, K-Ras and Rap []. The domain is also present in a number of other proteins among them the sexual differentiation protein in yeast that is essential for mating and meiosis and yeast adenylate cyclase. These proteins contain repeated leucine-rich (LRR) segments.; GO: 0007165 signal transduction; PDB: 3EC8_A 2C5L_D 2BYF_A 2CS4_A 3KH0_A 2B3A_A 1RAX_A 2RGF_A 1WGR_A 1WXA_A ....
Probab=95.95 E-value=0.021 Score=35.73 Aligned_cols=44 Identities=16% Similarity=0.157 Sum_probs=38.4
Q ss_pred CceEEEEcCCCC----eeeEEecCCCcHHHHHHHHHHhcCC--CCCceEE
Q psy7980 9 GILLRAQLPNQQ----RTSVHIRKGQTLLEALSKAMKLRNL--KPEMCTA 52 (93)
Q Consensus 9 ~~~irv~LPn~Q----rT~V~vrpG~tlrdaL~Kalk~R~L--~~~~C~V 52 (93)
+.+||||.++++ ..+|.|-+..|.+|.+..+|++-|+ .++.-..
T Consensus 2 ~~~lrVy~~~~~~~~~~k~i~v~~~tTa~evi~~~l~k~~l~~~~~~y~L 51 (93)
T PF00788_consen 2 SGVLRVYDGDGSPGSTYKTIKVSSSTTAREVIEMALEKFGLAEDPSDYCL 51 (93)
T ss_dssp EEEEEEEETTSSSCCSEEEEEEETTSBHHHHHHHHHHHTTTSSSGGGEEE
T ss_pred CeEEEEEcCCCCCCccEEEEEECCCCCHHHHHHHHHHHhCCCCCCCCEEE
Confidence 358999999999 9999999999999999999999999 4444444
No 13
>smart00295 B41 Band 4.1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs.
Probab=95.34 E-value=0.045 Score=38.35 Aligned_cols=46 Identities=13% Similarity=0.079 Sum_probs=38.6
Q ss_pred CceEEEEcCCCCeeeEEecCCCcHHHHHHHHHHhcCCCC-CceEEEe
Q psy7980 9 GILLRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKP-EMCTAYD 54 (93)
Q Consensus 9 ~~~irv~LPn~QrT~V~vrpG~tlrdaL~Kalk~R~L~~-~~C~Vy~ 54 (93)
...++||||||+...+.+.+-.|++|.+...+++=||.. +.-+.|.
T Consensus 3 ~~~~~V~l~dg~~~~~~~~~~~t~~ev~~~v~~~~~l~~~~~F~L~~ 49 (207)
T smart00295 3 PRVLKVYLLDGTTLEFEVDSSTTAEELLETVCRKLGIRESEYFGLQF 49 (207)
T ss_pred cEEEEEEecCCCEEEEEECCCCCHHHHHHHHHHHhCCCccceeEEEE
Confidence 457999999999999999999999999999999999943 2344443
No 14
>smart00314 RA Ras association (RalGDS/AF-6) domain. RasGTP effectors (in cases of AF6, canoe and RalGDS); putative RasGTP effectors in other cases. Kalhammer et al. have shown that not all RA domains bind RasGTP. Predicted structure similar to that determined, and that of the RasGTP-binding domain of Raf kinase. Predicted RA domains in PLC210 and nore1 found to bind RasGTP. Included outliers (Grb7, Grb14, adenylyl cyclases etc.)
Probab=94.68 E-value=0.17 Score=32.29 Aligned_cols=45 Identities=11% Similarity=0.197 Sum_probs=38.5
Q ss_pred ceEEEEcCC---CCeeeEEecCCCcHHHHHHHHHHhcCCCC--CceEEEe
Q psy7980 10 ILLRAQLPN---QQRTSVHIRKGQTLLEALSKAMKLRNLKP--EMCTAYD 54 (93)
Q Consensus 10 ~~irv~LPn---~QrT~V~vrpG~tlrdaL~Kalk~R~L~~--~~C~Vy~ 54 (93)
..+|||.-+ ++..++.|.++.|.+|.+..+|++-++.. +.+..|-
T Consensus 3 ~~lrV~~~~~~~~~~kti~v~~~tTa~~Vi~~~l~k~~l~~~~~~y~L~e 52 (90)
T smart00314 3 FVLRVYVDDLPGGTYKTLRVSSRTTARDVIQQLLEKFHLTDDPEEYVLVE 52 (90)
T ss_pred eEEEEecccCCCCcEEEEEECCCCCHHHHHHHHHHHhCCCCCcccEEEEE
Confidence 468898766 99999999999999999999999999974 4555554
No 15
>cd01787 GRB7_RA RA (RAS-associated like) domain of Grb7. Grb7_RA The RA (RAS-associated like) domain of Grb7. Grb7 is an adaptor molecule that mediates signal transduction from multiple cell surface receptors to various downstream signaling pathways. Grb7 and its related family members Grb10 and Grb14 share a conserved domain architecture that includes an amino-terminal proline-rich region, a central segment termed the GM region (for Grb and Mig) which includes the RA, PIR, and PH domains, and a carboxyl-terminal SH2 domain. Grb7/10/14 family proteins are phosphorylated on serine/threonine as well as tyrosine residues and are mainly localized to the cytoplasm.
Probab=93.70 E-value=0.33 Score=32.67 Aligned_cols=71 Identities=11% Similarity=0.101 Sum_probs=52.6
Q ss_pred CceEEEEcCCCCeeeEEecCCCcHHHHHHHHHHhcCCCCC-ceEEEeCCCCcccccCCCCCCcCCceeEEEeecccc
Q psy7980 9 GILLRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKPE-MCTAYDSNTGVSLQWDTDSDHLPTTEIRVEVMEGNL 84 (93)
Q Consensus 9 ~~~irv~LPn~QrT~V~vrpG~tlrdaL~Kalk~R~L~~~-~C~Vy~~~~~~~i~wdtD~~~L~~eEl~Ve~ld~~p 84 (93)
|-+|+||++++.--++.|-++||.+|++.....+-.+.++ ..+.|-......|. -.++|-|..||++..-+
T Consensus 2 k~vvkv~~~Dg~sK~l~V~~~~Ta~dV~~~L~~K~h~~~~~~W~LvE~~P~l~lE-----R~~EDHE~vvdvl~~W~ 73 (85)
T cd01787 2 KQVVKVYSEDGASKSLEVDERMTARDVCQLLVDKNHCQDDSSWTLVEHLPHLQLE-----RLFEDHELVVEVLSTWH 73 (85)
T ss_pred ceEEEEEecCCCeeEEEEcCCCcHHHHHHHHHHHhCCCCCCCeEEEEecchhhhh-----hhccchHHHHHHHHhcc
Confidence 4579999999999999999999999999999999988766 55655532211110 13467777777776555
No 16
>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain. The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 1EF1_B 1SGH_A 1E5W_A 2KC2_A 2KMA_A 3IVF_A 1H4R_B 3U8Z_A 1ISN_A 3BIN_A ....
Probab=93.17 E-value=0.14 Score=31.58 Aligned_cols=41 Identities=15% Similarity=0.079 Sum_probs=35.2
Q ss_pred EEcCCCCeeeEEecCCCcHHHHHHHHHHhcCCC-CCceEEEe
Q psy7980 14 AQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLK-PEMCTAYD 54 (93)
Q Consensus 14 v~LPn~QrT~V~vrpG~tlrdaL~Kalk~R~L~-~~~C~Vy~ 54 (93)
|+|||++...+.+-+..|.+|.+.+.+++-||. .+....+.
T Consensus 1 V~llD~~~~~~~v~~~~t~~~l~~~v~~~l~l~e~~~FgL~~ 42 (80)
T PF09379_consen 1 VRLLDGTTKTFEVDPKTTGQDLLEQVCDKLGLKEKEYFGLQY 42 (80)
T ss_dssp EEESSEEEEEEEEETTSBHHHHHHHHHHHHTTSSGGGEEEEE
T ss_pred CCCcCCCcEEEEEcCCCcHHHHHHHHHHHcCCCCccEEEEEE
Confidence 789999999999999999999999999999994 33444444
No 17
>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast. The function of the UBX domain is not known although the fragment of avian FAF-1 containing the UBX domain causes apoptosis of transfected cells.; GO: 0005515 protein binding; PDB: 3QX1_A 1H8C_A 3QCA_B 3QQ8_B 3QC8_B 3R3M_A 3QWZ_B 1S3S_H 1JRU_A 1I42_A ....
Probab=91.71 E-value=2.1 Score=26.65 Aligned_cols=57 Identities=14% Similarity=0.068 Sum_probs=43.5
Q ss_pred CceEEEEcCCCCeeeEEecCCCcHHHHHHHHHHhcCCCCCc-eEEEeCCCCcccccCC
Q psy7980 9 GILLRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKPEM-CTAYDSNTGVSLQWDT 65 (93)
Q Consensus 9 ~~~irv~LPn~QrT~V~vrpG~tlrdaL~Kalk~R~L~~~~-C~Vy~~~~~~~i~wdt 65 (93)
...|++-||||++-.-.+.+--|+.+...-+-.......+. -..+..-.+..+..+.
T Consensus 6 ~~~I~vRlpdG~~l~~~F~~~~tl~~l~~~v~~~~~~~~~~~f~L~~~~Pr~~l~~~~ 63 (82)
T PF00789_consen 6 VVRIQVRLPDGSRLQRRFPKSDTLQDLYDFVESQLFSPEESDFELITAFPRRELTDED 63 (82)
T ss_dssp EEEEEEEETTSTEEEEEEETTSBHHHHHHHHHHHHHCTTTSSEEEEESSSTEECCSTT
T ss_pred EEEEEEECCCCCEEEEEECCcchHHHHHHHHHHhcCCCCCccEEEEeCCCCcCCCccc
Confidence 45799999999999999999999998877666666655554 5555555566777666
No 18
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=89.96 E-value=2.6 Score=27.09 Aligned_cols=48 Identities=10% Similarity=0.079 Sum_probs=43.5
Q ss_pred CceEEEEcCCCCeeeEEecCCCcHHHHHHHHHHhcCCCCCceEEEeCC
Q psy7980 9 GILLRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKPEMCTAYDSN 56 (93)
Q Consensus 9 ~~~irv~LPn~QrT~V~vrpG~tlrdaL~Kalk~R~L~~~~C~Vy~~~ 56 (93)
+..|.|.-+++....+.|++-.++..-..+..++.|++++.+..+-.|
T Consensus 11 ~i~I~v~~~~g~~~~~~v~~~~~l~~l~~~y~~~~gi~~~~~rf~f~G 58 (87)
T cd01763 11 HINLKVKGQDGNEVFFKIKRSTPLKKLMEAYCQRQGLSMNSVRFLFDG 58 (87)
T ss_pred eEEEEEECCCCCEEEEEEcCCCHHHHHHHHHHHHhCCCccceEEEECC
Confidence 557999999999999999999999999999999999999988777754
No 19
>cd01668 TGS_RelA_SpoT TGS_RelA_SpoT: The RelA (SpoT) protein, also referred to as ppGpp hydrolase/synthetase, is a ribosome-associated protein that is activated during amino acid starvation and thought to mediate the stringent response. RelA contains a TGS domain, named after the Threonyl-tRNA Synthetase, GTPase, and SpoT proteins where it occurs. The function of the TGS domain is unknown.
Probab=89.21 E-value=0.69 Score=26.63 Aligned_cols=40 Identities=13% Similarity=0.179 Sum_probs=26.2
Q ss_pred EEEEcCCCCeeeEEecCCCcHHHHHHHHHHhcCCCCCceEEEeC
Q psy7980 12 LRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKPEMCTAYDS 55 (93)
Q Consensus 12 irv~LPn~QrT~V~vrpG~tlrdaL~Kalk~R~L~~~~C~Vy~~ 55 (93)
|-||+||++ .+++..|+|+.+.++. +.. ++..+.+++...
T Consensus 1 ~~~~~~~g~--~~~~~~~~t~~~~~~~-~~~-~~~~~~va~~vn 40 (60)
T cd01668 1 IYVFTPKGE--IIELPAGATVLDFAYA-IHT-EIGNRCVGAKVN 40 (60)
T ss_pred CEEECCCCC--EEEcCCCCCHHHHHHH-HCh-HhhhheEEEEEC
Confidence 458999987 5778999999995553 221 233344555544
No 20
>PF02824 TGS: TGS domain; InterPro: IPR004095 The TGS domain is present in a number of enzymes, for example, in threonyl-tRNA synthetase (ThrRS), GTPase, and guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (SpoT) []. The TGS domain is also present at the amino terminus of the uridine kinase from the spirochaete Treponema pallidum (but not any other organism, including the related spirochaete Borrelia burgdorferi). TGS is a small domain that consists of ~50 amino acid residues and is predicted to possess a predominantly beta-sheet structure. There is no direct information on the functions of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role []. ; PDB: 1WXQ_A 1NYR_B 1NYQ_B 2KMM_A 1WWT_A 1TKE_A 1TKG_A 1TJE_A 1QF6_A 1TKY_A ....
Probab=86.11 E-value=1.4 Score=26.76 Aligned_cols=26 Identities=23% Similarity=0.424 Sum_probs=21.4
Q ss_pred EEEEcCCCCeeeEEecCCCcHHHHHHHH
Q psy7980 12 LRAQLPNQQRTSVHIRKGQTLLEALSKA 39 (93)
Q Consensus 12 irv~LPn~QrT~V~vrpG~tlrdaL~Ka 39 (93)
|+||||+|+ ..++..|.|..|...+.
T Consensus 1 I~v~lpdG~--~~~~~~g~T~~d~A~~I 26 (60)
T PF02824_consen 1 IRVYLPDGS--IKELPEGSTVLDVAYSI 26 (60)
T ss_dssp EEEEETTSC--EEEEETTBBHHHHHHHH
T ss_pred CEEECCCCC--eeeCCCCCCHHHHHHHH
Confidence 689999994 55699999999987644
No 21
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain. DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.
Probab=85.25 E-value=2.9 Score=25.86 Aligned_cols=44 Identities=7% Similarity=0.040 Sum_probs=37.2
Q ss_pred EEEEcC-CCCeeeEEecCCCcHHHHHHHHHHhcCCCCC-ceEEEeC
Q psy7980 12 LRAQLP-NQQRTSVHIRKGQTLLEALSKAMKLRNLKPE-MCTAYDS 55 (93)
Q Consensus 12 irv~LP-n~QrT~V~vrpG~tlrdaL~Kalk~R~L~~~-~C~Vy~~ 55 (93)
|.|.++ +++...++|.+.+|+.+.-.++-+.-|++++ .+.+|.+
T Consensus 1 l~v~~~~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~Li~~G 46 (71)
T cd01796 1 ITVYTARSETTFSLDVDPDLELENFKALCEAESGIPASQQQLIYNG 46 (71)
T ss_pred CEEEECCCCCEEEEEECCcCCHHHHHHHHHHHhCCCHHHeEEEECC
Confidence 357788 7777889999999999999999999999888 6777764
No 22
>PRK05950 sdhB succinate dehydrogenase iron-sulfur subunit; Reviewed
Probab=84.39 E-value=2.4 Score=31.82 Aligned_cols=68 Identities=19% Similarity=0.154 Sum_probs=46.0
Q ss_pred CCeeeEEec-CCCcHHHHHHHHHH--------hcCCC---CCceEEEeCCCCcccccCCCCCCcCCceeEEEeecccccc
Q psy7980 19 QQRTSVHIR-KGQTLLEALSKAMK--------LRNLK---PEMCTAYDSNTGVSLQWDTDSDHLPTTEIRVEVMEGNLAL 86 (93)
Q Consensus 19 ~QrT~V~vr-pG~tlrdaL~Kalk--------~R~L~---~~~C~Vy~~~~~~~i~wdtD~~~L~~eEl~Ve~ld~~p~~ 86 (93)
-|.-.|++. +|+||-|+|.++=+ +.+.. ...|.|...|.. .+.=.+-+..+.++++.||=|.++|.+
T Consensus 17 ~~~~~v~~~~~~~tvl~~L~~~~~~~~~~l~~~~~c~~g~Cg~C~v~vnG~~-~laC~t~~~~~~~~~~tiepl~~~~vi 95 (232)
T PRK05950 17 MQTYEVDVDECGPMVLDALIKIKNEIDPTLTFRRSCREGVCGSDAMNINGKN-GLACITPISDLKKGKIVIRPLPGLPVI 95 (232)
T ss_pred eEEEEeCCCCCCCHHHHHHHHhCCccCCcceeeCCCCCCCCCCCEEEECCcC-ccchhChHhHcCCCeEEEEECCCCCee
Confidence 355678998 99999999998631 23332 235788885432 234444444455788999999999976
Q ss_pred c
Q psy7980 87 S 87 (93)
Q Consensus 87 ~ 87 (93)
+
T Consensus 96 k 96 (232)
T PRK05950 96 K 96 (232)
T ss_pred e
Confidence 4
No 23
>PF14847 Ras_bdg_2: Ras-binding domain of Byr2; PDB: 1I35_A 1K8R_B.
Probab=83.96 E-value=2.3 Score=29.30 Aligned_cols=44 Identities=16% Similarity=0.138 Sum_probs=32.7
Q ss_pred eEEEEcCCCCeeeEEecCCCcHHHHHHHHHHhcCCCC--CceEEEe
Q psy7980 11 LLRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKP--EMCTAYD 54 (93)
Q Consensus 11 ~irv~LPn~QrT~V~vrpG~tlrdaL~Kalk~R~L~~--~~C~Vy~ 54 (93)
.+++.+.+||-.+|+|.-=-+..+.+.|+||+=|+.- ....+|.
T Consensus 2 vi~~I~~dG~tk~VNV~~c~~a~eI~~rvLKKfg~~~~~~~~~~~v 47 (105)
T PF14847_consen 2 VIRFILEDGSTKTVNVSGCFNAQEIKRRVLKKFGLPEHPRNYCFYV 47 (105)
T ss_dssp EEEEEETTTEEEEEE--S--HHHHHHHHHHHHHTSS--CCCEEEEE
T ss_pred EEEEECCCCcEEEEEECCCCCHHHHHHHHHHHcCCccccccceEEE
Confidence 4789999999999999999999999999999999966 2344444
No 24
>PRK13552 frdB fumarate reductase iron-sulfur subunit; Provisional
Probab=83.84 E-value=2.9 Score=32.01 Aligned_cols=67 Identities=16% Similarity=0.092 Sum_probs=45.9
Q ss_pred CeeeEEecCCCcHHHHHHHHHHh-----------cCCCCCceEEEeCCCCcccccCCCCCCcCCceeEEEeeccccccc
Q psy7980 20 QRTSVHIRKGQTLLEALSKAMKL-----------RNLKPEMCTAYDSNTGVSLQWDTDSDHLPTTEIRVEVMEGNLALS 87 (93)
Q Consensus 20 QrT~V~vrpG~tlrdaL~Kalk~-----------R~L~~~~C~Vy~~~~~~~i~wdtD~~~L~~eEl~Ve~ld~~p~~~ 87 (93)
|.-.|++.+|+|+-|||.++=++ |.=..-.|++...|. ..+.=.|-+..+.+++|.||=|.+||.++
T Consensus 24 ~~y~v~~~~~~tvLdaL~~Ik~~~D~sL~fr~sCr~giCGsCam~ING~-~~LAC~t~v~~~~~~~i~iePl~~fpVir 101 (239)
T PRK13552 24 VTYQLEETPGMTLFIALNRIREEQDPSLQFDFVCRAGICGSCAMVINGR-PTLACRTLTSDYPDGVITLMPLPVFKLIG 101 (239)
T ss_pred EEEEecCCCCCCHHHHHHHHHhcCCCCeeEeccCCCCCCCCceeEECCe-EhhhhhccHhhcCCCcEEEEECCCCCcce
Confidence 66789999999999999987654 333445677776332 23333333344555689999999999765
No 25
>PLN02593 adrenodoxin-like ferredoxin protein
Probab=82.07 E-value=2.6 Score=28.99 Aligned_cols=43 Identities=19% Similarity=0.142 Sum_probs=29.6
Q ss_pred EEEEcCCCCeeeEEecCCCcHHHHHHHHHH---h--cC-CCCCceEEEe
Q psy7980 12 LRAQLPNQQRTSVHIRKGQTLLEALSKAMK---L--RN-LKPEMCTAYD 54 (93)
Q Consensus 12 irv~LPn~QrT~V~vrpG~tlrdaL~Kalk---~--R~-L~~~~C~Vy~ 54 (93)
|.+.-|++++..|.+.+|+||.+|+.++=- - +| -....|.|+.
T Consensus 3 V~fi~~~G~~~~v~~~~G~tLl~a~~~~gi~i~~~CgG~g~C~tC~V~V 51 (117)
T PLN02593 3 VTFVDKDGEERTVKAPVGMSLLEAAHENDIELEGACEGSLACSTCHVIV 51 (117)
T ss_pred EEEEcCCCCEEEEEECCCCcHHHHHHHcCCCCCccCCCcceeCCCEEEE
Confidence 334469999999999999999998775410 0 11 2344688887
No 26
>PRK08640 sdhB succinate dehydrogenase iron-sulfur subunit; Reviewed
Probab=79.32 E-value=5.1 Score=30.88 Aligned_cols=66 Identities=15% Similarity=0.120 Sum_probs=43.0
Q ss_pred CeeeEEecCCCcHHHHHHHHHHh------------------cCCCCCceEEEeCCCCcccccCCCCCCcCCceeEEEeec
Q psy7980 20 QRTSVHIRKGQTLLEALSKAMKL------------------RNLKPEMCTAYDSNTGVSLQWDTDSDHLPTTEIRVEVME 81 (93)
Q Consensus 20 QrT~V~vrpG~tlrdaL~Kalk~------------------R~L~~~~C~Vy~~~~~~~i~wdtD~~~L~~eEl~Ve~ld 81 (93)
|--.|++.+|+|+-|||.++=.. |.=..-.|++...|. ..+-=.|-+..+ +++|.||=|.
T Consensus 23 q~y~v~~~~~~tvLdaL~~I~~~~~~~~g~~~~~l~fr~sCr~giCGsCam~ING~-p~LAC~t~v~~~-~~~i~iePl~ 100 (249)
T PRK08640 23 EEFEIPYRPNMNVISALMEIRRNPVNAKGEKTTPVVWDMNCLEEVCGACSMVINGK-PRQACTALIDQL-EQPIRLEPMS 100 (249)
T ss_pred EEEEecCCCCCcHHHHHHHHHhcccccccccCCCeeEecccCCCCCCcCeeEECCc-cchhhhChHHHc-CCcEEEEECC
Confidence 56788999999999999988654 112334566665322 223223333333 5789999999
Q ss_pred cccccc
Q psy7980 82 GNLALS 87 (93)
Q Consensus 82 ~~p~~~ 87 (93)
+||.++
T Consensus 101 ~fpVik 106 (249)
T PRK08640 101 TFPVVR 106 (249)
T ss_pred CCCccc
Confidence 999765
No 27
>TIGR00384 dhsB succinate dehydrogenase and fumarate reductase iron-sulfur protein. Succinate dehydrogenase and fumarate reductase are reverse directions of the same enzymatic interconversion, succinate + FAD+ = fumarate + FADH2 (EC 1.3.11.1). In E. coli, the forward and reverse reactions are catalyzed by distinct complexes: fumarate reductase operates under anaerobic conditions and succinate dehydrogenase operates under aerobic conditions. This model also describes a region of the B subunit of a cytosolic archaeal fumarate reductase.
Probab=79.29 E-value=3.9 Score=30.39 Aligned_cols=70 Identities=20% Similarity=0.236 Sum_probs=44.2
Q ss_pred cCCCCeeeEEecCCCcHHHHHHHHHHh--cCC---------CCCceEEEeCCCCcccccCCCCCCcCCce-eEEEeeccc
Q psy7980 16 LPNQQRTSVHIRKGQTLLEALSKAMKL--RNL---------KPEMCTAYDSNTGVSLQWDTDSDHLPTTE-IRVEVMEGN 83 (93)
Q Consensus 16 LPn~QrT~V~vrpG~tlrdaL~Kalk~--R~L---------~~~~C~Vy~~~~~~~i~wdtD~~~L~~eE-l~Ve~ld~~ 83 (93)
.|--|.-.|++.+|+||-|+|.++-.. ..| ....|.|-..|. ..+.=.+-+..+ |.+ +.||-|.++
T Consensus 11 ~~~~~~~~v~~~~~~tvl~~l~~i~~~~~~~l~~~~~C~~g~Cg~C~v~vnG~-~~laC~t~v~~~-g~~~~~iepl~~~ 88 (220)
T TIGR00384 11 KPHLQSYEVPADEGMTVLDALNYIKDEQDPSLAFRRSCRNGICGSCAMNVNGK-PVLACKTKVEDL-GQPVMKIEPLPNL 88 (220)
T ss_pred CceeEEEEEeCCCCCcHHHHHHHHHHhcCCCceeecccCCCCCCCCeeEECCE-EhhhhhChHHHc-CCCcEEEeeCCCC
Confidence 344456678899999999999876422 222 123577776542 223333444443 554 899999999
Q ss_pred cccc
Q psy7980 84 LALS 87 (93)
Q Consensus 84 p~~~ 87 (93)
|.++
T Consensus 89 pvik 92 (220)
T TIGR00384 89 PVIK 92 (220)
T ss_pred ceee
Confidence 9755
No 28
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein. DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.
Probab=79.16 E-value=6.6 Score=24.43 Aligned_cols=43 Identities=7% Similarity=0.116 Sum_probs=37.5
Q ss_pred EEEcCCCCeeeEEecCCCcHHHHHHHHHHhcCCCCC-ceEEEeC
Q psy7980 13 RAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKPE-MCTAYDS 55 (93)
Q Consensus 13 rv~LPn~QrT~V~vrpG~tlrdaL~Kalk~R~L~~~-~C~Vy~~ 55 (93)
.|-+++|....++|.|..|+.|.=.++-+..|++++ +..+|.+
T Consensus 2 ~vk~~~G~~~~l~v~~~~TV~~lK~~I~~~~gi~~~~q~Li~~G 45 (70)
T cd01794 2 KVRLSTGKDVKLSVSSKDTVGQLKKQLQAAEGVDPCCQRWFFSG 45 (70)
T ss_pred eEEcCCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEECC
Confidence 578899999999999999999999988889999887 6667764
No 29
>PRK12576 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=78.64 E-value=9.9 Score=29.71 Aligned_cols=83 Identities=16% Similarity=0.162 Sum_probs=52.7
Q ss_pred ecCCC-CceEEEEc--CC----CCeeeEEecCCCcHHHHHHHHHHh--------cCCC---CCceEEEeCCCCcccccCC
Q psy7980 4 CLVPR-GILLRAQL--PN----QQRTSVHIRKGQTLLEALSKAMKL--------RNLK---PEMCTAYDSNTGVSLQWDT 65 (93)
Q Consensus 4 ~~~p~-~~~irv~L--Pn----~QrT~V~vrpG~tlrdaL~Kalk~--------R~L~---~~~C~Vy~~~~~~~i~wdt 65 (93)
+.||. +..++|+= |. -|.-.|++.+|+||-|+|.++=.. .+.. .-.|.|...|.. .+.=.+
T Consensus 2 ~~~~~~~~~~~i~R~~~~~~~~~~~~~v~~~~~~tvLd~L~~i~~~~d~tl~~~~~C~~G~CgsC~v~ING~~-~laC~t 80 (279)
T PRK12576 2 TQSPEKEVIFKVKRYDPEKGSWWQEYKVKVDRFTQVTEALRRIKEEQDPTLSYRASCHMAVCGSCGMKINGEP-RLACKT 80 (279)
T ss_pred CCCCCcEEEEEEEecCCCCCCeEEEEEEecCCCCHHHHHHHHhCCccCCCceecCCCCCCCCCCCEEEECCcE-eccccC
Confidence 34665 43566653 43 256678999999999999985221 1211 124777775432 334455
Q ss_pred CCCCcC---CceeEEEeeccccccc
Q psy7980 66 DSDHLP---TTEIRVEVMEGNLALS 87 (93)
Q Consensus 66 D~~~L~---~eEl~Ve~ld~~p~~~ 87 (93)
.+..+. |+++.||=|.++|.++
T Consensus 81 ~v~~~~~~~~~~~tiePl~~~~vik 105 (279)
T PRK12576 81 LVLDVAKKYNSVITIEPMDYFKVVK 105 (279)
T ss_pred cHHHhhcCCCCcEEEEECCCCceee
Confidence 555553 6789999999999764
No 30
>PF10790 DUF2604: Protein of Unknown function (DUF2604); InterPro: IPR019726 This entry represents bacterial proteins with undetermined function.
Probab=78.45 E-value=9.8 Score=25.14 Aligned_cols=64 Identities=13% Similarity=0.112 Sum_probs=45.0
Q ss_pred CCCCeeeEEecCCCcHHHHHHHHHHhcCCCCCceEE--EeCCCCcccccCCCCCCc---CCceeEEEee
Q psy7980 17 PNQQRTSVHIRKGQTLLEALSKAMKLRNLKPEMCTA--YDSNTGVSLQWDTDSDHL---PTTEIRVEVM 80 (93)
Q Consensus 17 Pn~QrT~V~vrpG~tlrdaL~Kalk~R~L~~~~C~V--y~~~~~~~i~wdtD~~~L---~~eEl~Ve~l 80 (93)
=|+|-+.|+.-+-..|+-+.+|||+.-|=.-+.-+= ++......+|.|.-+..+ +|..|++.+.
T Consensus 3 VNGqPv~VEANvnaPLh~v~akALe~sgNvgQP~ENWElkDe~G~vlD~~kKveD~GftngvkLFLsLK 71 (76)
T PF10790_consen 3 VNGQPVQVEANVNAPLHPVRAKALEQSGNVGQPPENWELKDESGQVLDVNKKVEDFGFTNGVKLFLSLK 71 (76)
T ss_pred eCCCceeeecCCCCcchHHHHHHHhhccccCCCcccceeeccCCcEeeccchhhhccccccceEEEEee
Confidence 389999999999999999999999998864333332 334455566666544444 4777766543
No 31
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=73.81 E-value=16 Score=22.39 Aligned_cols=44 Identities=11% Similarity=0.139 Sum_probs=36.8
Q ss_pred EEEEcCCCCeeeEEecCCCcHHHHHHHHHHhcCCCCC-ceEEEeC
Q psy7980 12 LRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKPE-MCTAYDS 55 (93)
Q Consensus 12 irv~LPn~QrT~V~vrpG~tlrdaL~Kalk~R~L~~~-~C~Vy~~ 55 (93)
|-|-.++|+...++|.+..|+.+--.+..++-|+.++ ...+|.+
T Consensus 3 i~vk~~~G~~~~l~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~G 47 (74)
T cd01807 3 LTVKLLQGRECSLQVSEKESVSTLKKLVSEHLNVPEEQQRLLFKG 47 (74)
T ss_pred EEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEECC
Confidence 4556678998899999999999999999999999888 5555554
No 32
>cd00207 fer2 2Fe-2S iron-sulfur cluster binding domain. Iron-sulfur proteins play an important role in electron transfer processes and in various enzymatic reactions. The family includes plant and algal ferredoxins, which act as electron carriers in photosynthesis and ferredoxins, which participate in redox chains (from bacteria to mammals). Fold is ismilar to thioredoxin.
Probab=73.51 E-value=4.9 Score=24.43 Aligned_cols=23 Identities=26% Similarity=0.343 Sum_probs=18.4
Q ss_pred cCCCCeeeEEecCCCcHHHHHHH
Q psy7980 16 LPNQQRTSVHIRKGQTLLEALSK 38 (93)
Q Consensus 16 LPn~QrT~V~vrpG~tlrdaL~K 38 (93)
..|++...+++.+|.||.+++..
T Consensus 4 ~~~~~~~~~~~~~g~~ll~al~~ 26 (84)
T cd00207 4 NVPGSGVEVEVPEGETLLDAARE 26 (84)
T ss_pred ecCCCCEEEEECCCCcHHHHHHH
Confidence 34466778999999999998775
No 33
>PRK07570 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Validated
Probab=73.40 E-value=9.5 Score=29.55 Aligned_cols=68 Identities=13% Similarity=0.083 Sum_probs=44.1
Q ss_pred CeeeEE-ecCCCcHHHHHHHHHHhc------CC---------CCCceEEEeCCCC-----cccccCCCCCCcC-CceeEE
Q psy7980 20 QRTSVH-IRKGQTLLEALSKAMKLR------NL---------KPEMCTAYDSNTG-----VSLQWDTDSDHLP-TTEIRV 77 (93)
Q Consensus 20 QrT~V~-vrpG~tlrdaL~Kalk~R------~L---------~~~~C~Vy~~~~~-----~~i~wdtD~~~L~-~eEl~V 77 (93)
|.-.|+ +.+|+|+-|||.++=+.- .| ..-.|++...|.- ..+-=.|.+..+. |++|.|
T Consensus 20 q~y~v~~~~~~~tvLd~L~~Ik~~~~~~~~~~l~fr~sCr~~iCGsCam~ING~p~~~~~~~LAC~t~~~~~~~~~~i~i 99 (250)
T PRK07570 20 ETYEVDDISPDMSFLEMLDVLNEQLIEKGEEPVAFDHDCREGICGMCGLVINGRPHGPDRGTTTCQLHMRSFKDGDTITI 99 (250)
T ss_pred EEEEecCCCCCCcHHHHHHHHHHHhhccCCCCeeEeccccCCcCCcceeEECCccCCCCcccchhhhhhhhcCCCCeEEE
Confidence 566787 889999999999982211 11 2334555553332 1455555555554 589999
Q ss_pred Eeec--cccccc
Q psy7980 78 EVME--GNLALS 87 (93)
Q Consensus 78 e~ld--~~p~~~ 87 (93)
|=|. +||.+.
T Consensus 100 ePl~~~~fpvik 111 (250)
T PRK07570 100 EPWRAAAFPVIK 111 (250)
T ss_pred EECCCCCCCeee
Confidence 9998 899764
No 34
>PRK12386 fumarate reductase iron-sulfur subunit; Provisional
Probab=73.15 E-value=5.7 Score=30.90 Aligned_cols=66 Identities=17% Similarity=0.219 Sum_probs=44.4
Q ss_pred CeeeEEecCCCcHHHHHHHHHHhc-----C-------CCCCceEEEeCCCCcccccCCCCCCcCC-ceeEEEeecccccc
Q psy7980 20 QRTSVHIRKGQTLLEALSKAMKLR-----N-------LKPEMCTAYDSNTGVSLQWDTDSDHLPT-TEIRVEVMEGNLAL 86 (93)
Q Consensus 20 QrT~V~vrpG~tlrdaL~Kalk~R-----~-------L~~~~C~Vy~~~~~~~i~wdtD~~~L~~-eEl~Ve~ld~~p~~ 86 (93)
|.-.|++.+|+||-|+|.. ++.. + =..-.|+|...|. ..+.=.+-+..+.| +++.||=+.+||.+
T Consensus 20 q~y~v~~~~~~tvLd~L~~-i~~~~d~~l~~r~~C~~g~CGsCa~~InG~-p~laC~t~~~~~~~~~~itiepl~~fpVi 97 (251)
T PRK12386 20 QDYTVEVNEGEVVLDVIHR-LQATQAPDLAVRWNCKAGKCGSCSAEINGR-PRLMCMTRMSTFDEDETVTVTPMRTFPVI 97 (251)
T ss_pred EEEEEeCCCCCCHHHHHHH-hccccCCCCcccCCCCCCcCCCCEEEECcc-EeccHHhHHHHhCCCCeEEEccCCCCCcc
Confidence 5668899999999999998 5542 1 1344688888542 23333333334444 67899999999976
Q ss_pred c
Q psy7980 87 S 87 (93)
Q Consensus 87 ~ 87 (93)
.
T Consensus 98 k 98 (251)
T PRK12386 98 R 98 (251)
T ss_pred c
Confidence 4
No 35
>PF13085 Fer2_3: 2Fe-2S iron-sulfur cluster binding domain; PDB: 3P4Q_N 1KFY_N 3CIR_N 3P4R_B 2B76_N 1KF6_B 3P4P_N 3P4S_B 1L0V_B 1ZOY_B ....
Probab=72.68 E-value=15 Score=25.32 Aligned_cols=67 Identities=21% Similarity=0.199 Sum_probs=45.1
Q ss_pred CeeeEEecCCCcHHHHHHHHHHhc-----------CCCCCceEEEeCCCCcccccCCCCCCcCC---ceeEEEeeccccc
Q psy7980 20 QRTSVHIRKGQTLLEALSKAMKLR-----------NLKPEMCTAYDSNTGVSLQWDTDSDHLPT---TEIRVEVMEGNLA 85 (93)
Q Consensus 20 QrT~V~vrpG~tlrdaL~Kalk~R-----------~L~~~~C~Vy~~~~~~~i~wdtD~~~L~~---eEl~Ve~ld~~p~ 85 (93)
|--.|++.+|+|+-|||.++=+.- .=..-.|+|...|.. .+-=.+-+..+.+ ++|.+|=|.++|.
T Consensus 19 ~~y~v~~~~~~tVLd~L~~Ik~~~D~sLafr~sCr~giCGsCam~ING~~-~LAC~t~v~~~~~~~~~~i~IePL~~fpV 97 (110)
T PF13085_consen 19 QEYEVPVEPGMTVLDALNYIKEEQDPSLAFRYSCRSGICGSCAMRINGRP-RLACKTQVDDLIEKFGNVITIEPLPNFPV 97 (110)
T ss_dssp EEEEEEGGSTSBHHHHHHHHHHHT-TT--B--SSSSSSSSTTEEEETTEE-EEGGGSBGGGCTTSETBEEEEEESTTSBE
T ss_pred EEEEecCCCCCcHHHHHHHHHhccCCCeEEEecCCCCCCCCCEEEECCce-ecceeeEchhccCCCcceEEEEECCCCCc
Confidence 455789999999999999986662 223457888774322 3333333444443 4799999999997
Q ss_pred cc
Q psy7980 86 LS 87 (93)
Q Consensus 86 ~~ 87 (93)
++
T Consensus 98 ir 99 (110)
T PF13085_consen 98 IR 99 (110)
T ss_dssp EE
T ss_pred ce
Confidence 64
No 36
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=71.98 E-value=16 Score=21.89 Aligned_cols=44 Identities=9% Similarity=0.187 Sum_probs=37.4
Q ss_pred EEEEcCCCCeeeEEecCCCcHHHHHHHHHHhcCCCC-CceEEEeC
Q psy7980 12 LRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKP-EMCTAYDS 55 (93)
Q Consensus 12 irv~LPn~QrT~V~vrpG~tlrdaL~Kalk~R~L~~-~~C~Vy~~ 55 (93)
|.+--++++...+.|++..++...+.+..++.|+++ +....+-.
T Consensus 3 i~v~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~i~~~~~~~l~fd 47 (72)
T PF11976_consen 3 IKVRSQDGKEIKFKVKPTTTVSKLIEKYCEKKGIPPEESIRLIFD 47 (72)
T ss_dssp EEEEETTSEEEEEEEETTSCCHHHHHHHHHHHTTTT-TTEEEEET
T ss_pred EEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCccceEEEEEC
Confidence 455668899999999999999999999999999999 66655553
No 37
>PTZ00490 Ferredoxin superfamily; Provisional
Probab=67.99 E-value=13 Score=26.81 Aligned_cols=47 Identities=17% Similarity=0.330 Sum_probs=36.0
Q ss_pred CceEEEEcCCCCeeeEEecCCCcHHHHHHHH--HHh--c---CCCCCceEEEeC
Q psy7980 9 GILLRAQLPNQQRTSVHIRKGQTLLEALSKA--MKL--R---NLKPEMCTAYDS 55 (93)
Q Consensus 9 ~~~irv~LPn~QrT~V~vrpG~tlrdaL~Ka--lk~--R---~L~~~~C~Vy~~ 55 (93)
+..|.+.-+++.+..|++.+|.||-+++... ... . +-....|.||..
T Consensus 35 ~v~I~~~~~dG~~~~v~~~~G~sLLeal~~~~~i~i~~~CGG~g~CgtC~V~V~ 88 (143)
T PTZ00490 35 KVKVCVKKRDGTHCDVEVPVGMSLMHALRDVAKLDVEGTCNGCMQCATCHVYLS 88 (143)
T ss_pred cEEEEEEcCCCCEEEEEECCCccHHHHHHHcCCCCccccCCCCCEeCCCEEEEC
Confidence 4468889999999999999999999998863 111 1 135568999993
No 38
>PF04106 APG5: Autophagy protein Apg5 ; InterPro: IPR007239 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents autophagy protein 5 (Apg5).; GO: 0006914 autophagy, 0005737 cytoplasm; PDB: 2DYM_G 2DYO_A.
Probab=67.52 E-value=4.4 Score=30.14 Aligned_cols=35 Identities=31% Similarity=0.224 Sum_probs=20.4
Q ss_pred CceEEEEcCCC-CeeeEEecCC------CcHHHHHHHHHHhc
Q psy7980 9 GILLRAQLPNQ-QRTSVHIRKG------QTLLEALSKAMKLR 43 (93)
Q Consensus 9 ~~~irv~LPn~-QrT~V~vrpG------~tlrdaL~Kalk~R 43 (93)
..=+|+|+|++ ...-..+.|- .||.|+|.+.+...
T Consensus 110 ~IPiRiy~~~~~~~iQ~~i~~~~~~g~~~TL~d~L~~~lp~~ 151 (197)
T PF04106_consen 110 HIPIRIYLPGSVPVIQPPIPPIKEDGQPQTLGDALSELLPEL 151 (197)
T ss_dssp B--EEEEE-SS--EE----B----TT---BTGGGHHHHHTTT
T ss_pred eeEEEEEeCCCcceEecccccccCCCCcCcHHHHHHHhChhh
Confidence 34599999999 5555556553 69999999999754
No 39
>KOG3784|consensus
Probab=66.72 E-value=12 Score=31.67 Aligned_cols=39 Identities=21% Similarity=0.231 Sum_probs=34.9
Q ss_pred ceEEEEcCCCCeeeEEecCCCcHHHHHHHHHHhcCCCCC
Q psy7980 10 ILLRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKPE 48 (93)
Q Consensus 10 ~~irv~LPn~QrT~V~vrpG~tlrdaL~Kalk~R~L~~~ 48 (93)
..+.|+|||||.++|+++--.|--+.|..++.+=|+.-+
T Consensus 108 v~l~v~lpng~~i~i~~~~s~tt~~vl~~v~~kl~l~~e 146 (407)
T KOG3784|consen 108 VELDVFLPNGEKITINCLVSDTASLVLKSVCRKLGLPDE 146 (407)
T ss_pred eEEEEEccCCceEEEEEEecccHHHHHHHHHhhcCCchH
Confidence 468999999999999999999999999999999888733
No 40
>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway. Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.
Probab=65.97 E-value=33 Score=22.14 Aligned_cols=46 Identities=11% Similarity=0.145 Sum_probs=32.6
Q ss_pred CceEEEEcCCCCeeeEEecCCCcHHHHHHHHHHhcCCCCCceEEEeC
Q psy7980 9 GILLRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKPEMCTAYDS 55 (93)
Q Consensus 9 ~~~irv~LPn~QrT~V~vrpG~tlrdaL~Kalk~R~L~~~~C~Vy~~ 55 (93)
+.+|||-=|+| --.|++-|+-|+.+-+.|..+.-+++.+.=.+|..
T Consensus 4 ~milRvrS~dG-~~Rie~~~~~t~~~L~~kI~~~l~~~~~~~~L~~~ 49 (80)
T PF11543_consen 4 SMILRVRSKDG-MKRIEVSPSSTLSDLKEKISEQLSIPDSSQSLSKD 49 (80)
T ss_dssp --EEEEE-SSE-EEEEEE-TTSBHHHHHHHHHHHS---TTT---BSS
T ss_pred cEEEEEECCCC-CEEEEcCCcccHHHHHHHHHHHcCCCCcceEEEec
Confidence 56899999999 55679999999999999999999999998888884
No 41
>PF14804 Jag_N: Jag N-terminus; PDB: 3GKU_B.
Probab=65.83 E-value=7.1 Score=23.66 Aligned_cols=27 Identities=30% Similarity=0.240 Sum_probs=20.5
Q ss_pred CCCcHHHHHHHHHHhcCCCCCceEEEe
Q psy7980 28 KGQTLLEALSKAMKLRNLKPEMCTAYD 54 (93)
Q Consensus 28 pG~tlrdaL~Kalk~R~L~~~~C~Vy~ 54 (93)
.|.|+.+|+.+|++.-|++.+.-.+=.
T Consensus 3 ~gkt~eeAi~~A~~~l~~~~~~~~~eV 29 (52)
T PF14804_consen 3 EGKTVEEAIEKALKELGVPREELEYEV 29 (52)
T ss_dssp EESSHHHHHHHHHHHTT--GGGEEEEE
T ss_pred eECCHHHHHHHHHHHhCCChHHEEEEE
Confidence 488999999999999999887655443
No 42
>PF00111 Fer2: 2Fe-2S iron-sulfur cluster binding domain; InterPro: IPR001041 The ferredoxin protein family are electron carrier proteins with an iron-sulphur cofactor that act in a wide variety of metabolic reactions. Ferredoxins can be divided into several subgroups depending upon the physiological nature of the iron-sulphur cluster(s) and according to sequence similarities. This entry represents members of the 2Fe-2S ferredoxin family that have a general core structure consisting of beta(2)-alpha-beta(2), which includes putidaredoxin and terpredoxin, and adrenodoxin [, , , ]. They are proteins of around one hundred amino acids with four conserved cysteine residues to which the 2Fe-2S cluster is ligated. This conserved region is also found as a domain in various metabolic enzymes and in multidomain proteins, such as aldehyde oxidoreductase (N-terminal), xanthine oxidase (N-terminal), phthalate dioxygenase reductase (C-terminal), succinate dehydrogenase iron-sulphur protein (N-terminal), and methane monooxygenase reductase (N-terminal).; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 3M9S_C 2FUG_L 3IAS_L 2YBB_3 3IAM_3 3I9V_3 1JQ4_A 1DOX_A 1DOY_A 2KAJ_A ....
Probab=65.39 E-value=7.3 Score=23.67 Aligned_cols=39 Identities=26% Similarity=0.284 Sum_probs=27.9
Q ss_pred CCCCeeeEEecCCCc-HHHHHHHH-H-Hh----cCCCCCceEEEeC
Q psy7980 17 PNQQRTSVHIRKGQT-LLEALSKA-M-KL----RNLKPEMCTAYDS 55 (93)
Q Consensus 17 Pn~QrT~V~vrpG~t-lrdaL~Ka-l-k~----R~L~~~~C~Vy~~ 55 (93)
.|++...+++.+|.+ |-|++.++ - .. ++=..-.|.|+..
T Consensus 3 i~g~~~~~~~~~~~~~ll~~~~~~~gi~i~~~C~~g~Cg~C~v~v~ 48 (78)
T PF00111_consen 3 INGKGVTVEVPPGETLLLDALERAGGIGIPYSCGGGGCGTCRVRVL 48 (78)
T ss_dssp TTTEEEEEEEETTSBBHHHHHHHTTTTTSTTSSSSSSSSTTEEEEE
T ss_pred ECCeEEEEEeCCCccHHHHHHHHcCCCCcccCCCCCccCCcEEEEe
Confidence 478889999999999 99999864 0 10 1112667888873
No 43
>cd01781 AF6_RA_repeat2 Ubiquitin domain of AT-6, second repeat. The AF-6 protein (also known as afadin and canoe) is a multidomain cell junction protein that contains two N-terminal Ras-associating (RA) domains in addition to FHA (forkhead-associated), DIL (class V myosin homology region), and PDZ domains and a proline-rich region. AF6 acts downstream of the Egfr (Epidermal Growth Factor-receptor)/Ras signalling pathway and provides a link from Egfr to cytoskeletal elements.
Probab=65.31 E-value=25 Score=24.23 Aligned_cols=44 Identities=14% Similarity=0.178 Sum_probs=35.4
Q ss_pred eEEEE---c-CCCCeeeEEecCCCcHHHHHHHHHHhcCCCCCceEEEe
Q psy7980 11 LLRAQ---L-PNQQRTSVHIRKGQTLLEALSKAMKLRNLKPEMCTAYD 54 (93)
Q Consensus 11 ~irv~---L-Pn~QrT~V~vrpG~tlrdaL~Kalk~R~L~~~~C~Vy~ 54 (93)
.++|| | |+--.-+|.|-.--+.++.+.+||++-||..++..=|.
T Consensus 3 ~LKIYg~~L~~~~~YKSIlvt~~~~a~~vV~eALeKygL~~e~p~~Y~ 50 (100)
T cd01781 3 TLKIYGGSLVPTRPYKTILLSINDNADRIVGEALEKYGLEKSDPDDYC 50 (100)
T ss_pred eEEEcCCcccCCCCeEEEEecCCccHHHHHHHHHHHhCCCccCccceE
Confidence 45554 3 66667788899999999999999999999888766555
No 44
>TIGR02008 fdx_plant ferredoxin [2Fe-2S]. This model represents single domain 2Fe-2S (also called plant type) ferredoxins. In general, these occur as a single domain proteins or with a chloroplast transit peptide. Species tend to be photosynthetic, but several forms may occur in one species and individually may not be associated with photocynthesis. Halobacterial forms differ somewhat in architecture; they score between trusted and noise cutoffs. Sequences scoring below the noise cutoff tend to be ferredoxin-related domains of larger proteins.
Probab=63.03 E-value=14 Score=24.07 Aligned_cols=28 Identities=18% Similarity=0.274 Sum_probs=21.9
Q ss_pred EEEEcCCCCeeeEEecCCCcHHHHHHHH
Q psy7980 12 LRAQLPNQQRTSVHIRKGQTLLEALSKA 39 (93)
Q Consensus 12 irv~LPn~QrT~V~vrpG~tlrdaL~Ka 39 (93)
++++-|+++--.+.+.+|.||-||+.++
T Consensus 5 v~~~~~~~~~~~~~~~~g~tLLda~~~~ 32 (97)
T TIGR02008 5 VTLVNPDGGEETIECPDDQYILDAAEEA 32 (97)
T ss_pred EEEEECCCCEEEEEECCCCcHHHHHHHc
Confidence 3343499988889999999999997643
No 45
>PF08827 DUF1805: Domain of unknown function (DUF1805); InterPro: IPR014931 This protein is found in bacteria and archaea and has an N-terminal tetramerisation region that is composed of beta sheets. ; PDB: 1QW2_A.
Probab=62.89 E-value=2.8 Score=26.57 Aligned_cols=15 Identities=47% Similarity=0.476 Sum_probs=10.1
Q ss_pred EEecCCCcHHHHHHH
Q psy7980 24 VHIRKGQTLLEALSK 38 (93)
Q Consensus 24 V~vrpG~tlrdaL~K 38 (93)
.-+++||+.+|||.|
T Consensus 44 lGI~~Gm~g~eAL~~ 58 (59)
T PF08827_consen 44 LGIKPGMTGREALEK 58 (59)
T ss_dssp TT--TT-BHHHHGGG
T ss_pred hCCCCCCCHHHHHHh
Confidence 357899999999976
No 46
>PTZ00044 ubiquitin; Provisional
Probab=61.89 E-value=33 Score=20.70 Aligned_cols=43 Identities=7% Similarity=0.111 Sum_probs=35.6
Q ss_pred EEEEcCCCCeeeEEecCCCcHHHHHHHHHHhcCCCCC-ceEEEe
Q psy7980 12 LRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKPE-MCTAYD 54 (93)
Q Consensus 12 irv~LPn~QrT~V~vrpG~tlrdaL~Kalk~R~L~~~-~C~Vy~ 54 (93)
|-|=.++|+-..+++.+..|+.+.=.+.-++-|++++ +..+|.
T Consensus 3 i~vk~~~G~~~~l~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~ 46 (76)
T PTZ00044 3 ILIKTLTGKKQSFNFEPDNTVQQVKMALQEKEGIDVKQIRLIYS 46 (76)
T ss_pred EEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEEC
Confidence 3444578888899999999999999999999999888 566665
No 47
>PRK12385 fumarate reductase iron-sulfur subunit; Provisional
Probab=61.84 E-value=13 Score=28.51 Aligned_cols=63 Identities=21% Similarity=0.184 Sum_probs=41.4
Q ss_pred CeeeEEecCCCcHHHHHHHHHHh--cCCC--CCc-------eEEEeCCCCcccccCCCCCCcC---CceeEEEeeccccc
Q psy7980 20 QRTSVHIRKGQTLLEALSKAMKL--RNLK--PEM-------CTAYDSNTGVSLQWDTDSDHLP---TTEIRVEVMEGNLA 85 (93)
Q Consensus 20 QrT~V~vrpG~tlrdaL~Kalk~--R~L~--~~~-------C~Vy~~~~~~~i~wdtD~~~L~---~eEl~Ve~ld~~p~ 85 (93)
|--.|++.+|+|+-|||.++=+. .+|. ..| |+|-..|.- .+ .|.++. ++++.||-|+++|.
T Consensus 25 ~~~~v~~~~~~tvl~~L~~ik~~~d~~l~fr~~C~~giCGsC~v~InG~~-~l----aC~t~~~~~~~~~~iePl~~fpv 99 (244)
T PRK12385 25 QTYEVPYDETTSLLDALGYIKDNLAPDLSYRWSCRMAICGSCGMMVNNVP-KL----ACKTFLRDYTGGMKVEALANFPI 99 (244)
T ss_pred EEEEeeCCCCCcHHHHHHHHHHhcCCCceeccCCCCCcCCCCcceECccC-hh----hHhhHHHHcCCCeEEeeCCCCCe
Confidence 66778999999999999876443 2332 122 777664422 22 333333 36899999999997
Q ss_pred cc
Q psy7980 86 LS 87 (93)
Q Consensus 86 ~~ 87 (93)
++
T Consensus 100 ik 101 (244)
T PRK12385 100 ER 101 (244)
T ss_pred ee
Confidence 65
No 48
>PF02017 CIDE-N: CIDE-N domain; InterPro: IPR003508 This domain consists of caspase-activated (CAD) nucleases, which induce DNA fragmentation and chromatin condensation during apoptosis, and the cell death activator proteins CIDE-A and CIDE-B, which are inhibitors of CAD nuclease. The two proteins interact through the region defined by the method signatures.; GO: 0006915 apoptosis, 0005622 intracellular; PDB: 1IBX_A 2EEL_A 1F2R_I 1C9F_A 1D4B_A.
Probab=61.54 E-value=18 Score=23.83 Aligned_cols=49 Identities=20% Similarity=0.184 Sum_probs=35.6
Q ss_pred CCcHHHHHHHHHHhcCCCCCceEEEeCCCCcccccCCCCCCcCCceeEE
Q psy7980 29 GQTLLEALSKAMKLRNLKPEMCTAYDSNTGVSLQWDTDSDHLPTTEIRV 77 (93)
Q Consensus 29 G~tlrdaL~Kalk~R~L~~~~C~Vy~~~~~~~i~wdtD~~~L~~eEl~V 77 (93)
+-+|.|-+.|++++-++..+.|.++...++..|+=+.--.+|..+...+
T Consensus 20 A~sL~eL~~K~~~~l~~~~~~~~lvL~eDGT~VddEeyF~tLp~nT~lm 68 (78)
T PF02017_consen 20 ASSLEELLEKACDKLQLPEEPVRLVLEEDGTEVDDEEYFQTLPDNTVLM 68 (78)
T ss_dssp ESSHHHHHHHHHHHHT-SSSTCEEEETTTTCBESSCHHHCCSSSSEEEE
T ss_pred cCCHHHHHHHHHHHhCCCCcCcEEEEeCCCcEEccHHHHhhCCCCCEEE
Confidence 3689999999999999999999998866665666554455565555443
No 49
>PF11275 DUF3077: Protein of unknown function (DUF3077); InterPro: IPR021427 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=61.34 E-value=9.4 Score=25.21 Aligned_cols=24 Identities=21% Similarity=0.232 Sum_probs=19.5
Q ss_pred CCCeeeEEecCCCcHHHHHHHHHH
Q psy7980 18 NQQRTSVHIRKGQTLLEALSKAMK 41 (93)
Q Consensus 18 n~QrT~V~vrpG~tlrdaL~Kalk 41 (93)
|+..-...|+||+.+.|||..+--
T Consensus 12 ~~~~pLF~v~pgip~~dAl~~aS~ 35 (79)
T PF11275_consen 12 NPHHPLFRVNPGIPCEDALEHASV 35 (79)
T ss_pred CCCCCeeeeCCCCCHHHHHHHHHH
Confidence 444578889999999999998754
No 50
>smart00166 UBX Domain present in ubiquitin-regulatory proteins. Present in FAF1 and Shp1p.
Probab=58.37 E-value=43 Score=20.86 Aligned_cols=52 Identities=13% Similarity=0.053 Sum_probs=37.5
Q ss_pred eEEEEcCCCCeeeEEecCCCcHHHHHHHHHHhcCCCCCceEEEeCCCCcccc
Q psy7980 11 LLRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKPEMCTAYDSNTGVSLQ 62 (93)
Q Consensus 11 ~irv~LPn~QrT~V~vrpG~tlrdaL~Kalk~R~L~~~~C~Vy~~~~~~~i~ 62 (93)
.|++=||||.+-...+.+-.||+|.-.-.-...+........+..-.++.+.
T Consensus 6 ~I~iRlPdG~ri~~~F~~~~tl~~v~~~v~~~~~~~~~~f~L~t~~Prk~l~ 57 (80)
T smart00166 6 RLQIRLPDGSRLVRRFPSSDTLRTVYEFVSAALTDGNDPFTLNSPFPRRTFT 57 (80)
T ss_pred EEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHcccCCCCCEEEEeCCCCcCCc
Confidence 6899999999999999999999877666645566555555555543333443
No 51
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=58.35 E-value=37 Score=20.15 Aligned_cols=44 Identities=7% Similarity=0.126 Sum_probs=37.0
Q ss_pred eEEEEcCCCCeeeEEecCCCcHHHHHHHHHHhcCCCCCceEEEe
Q psy7980 11 LLRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKPEMCTAYD 54 (93)
Q Consensus 11 ~irv~LPn~QrT~V~vrpG~tlrdaL~Kalk~R~L~~~~C~Vy~ 54 (93)
.|.|-.++++...+++.+..|+.+--.+..+.-|++++.-..+.
T Consensus 2 ~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~g~~~~~qrL~~ 45 (76)
T cd01806 2 LIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIY 45 (76)
T ss_pred EEEEEeCCCCEEEEEECCCCCHHHHHHHHhHhhCCChhhEEEEE
Confidence 36677889999999999999999999988888899998555544
No 52
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis. PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain
Probab=58.27 E-value=50 Score=21.92 Aligned_cols=42 Identities=14% Similarity=0.329 Sum_probs=33.8
Q ss_pred eEEEEcCCCCeeeEEecCCCcHHHHHHHHHHhcCCCCC-ceEEEe
Q psy7980 11 LLRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKPE-MCTAYD 54 (93)
Q Consensus 11 ~irv~LPn~QrT~V~vrpG~tlrdaL~Kalk~R~L~~~-~C~Vy~ 54 (93)
.++||.=. -..+.|.+|.+..+-..|..++.+++++ .-.-|+
T Consensus 4 vvKV~f~~--tIaIrvp~~~~y~~L~~ki~~kLkl~~e~i~LsYk 46 (80)
T cd06406 4 VVKVHFKY--TVAIQVARGLSYATLLQKISSKLELPAEHITLSYK 46 (80)
T ss_pred EEEEEEEE--EEEEEcCCCCCHHHHHHHHHHHhCCCchhcEEEec
Confidence 57777755 5567889999999999999999999877 555666
No 53
>PF10531 SLBB: SLBB domain; InterPro: IPR019554 The soluble ligand-binding beta-grasp domain (SLBB) contains a beta-grasp fold. They are found in a diverse set of proteins that include the animal vitamin B12 uptake proteins; transcobalamin, intrinsic factor and the bacterial polysaccharide export proteins []. Some proteins may be part of a membrane complex involved in electron transport, others are probably involved in the export of the extracellular polysaccharide colanic acid from the cell to medium.; PDB: 3IAS_S 2FUG_A 3I9V_A 3M9S_1 3IAM_A 2YBB_1 2W8I_E 2W8H_E 2J58_D.
Probab=57.92 E-value=6.1 Score=23.57 Aligned_cols=19 Identities=26% Similarity=0.422 Sum_probs=14.2
Q ss_pred eeeEEecCCCcHHHHHHHH
Q psy7980 21 RTSVHIRKGQTLLEALSKA 39 (93)
Q Consensus 21 rT~V~vrpG~tlrdaL~Ka 39 (93)
--..++.+|+|+.|+|+.|
T Consensus 11 PG~~~~~~g~tl~~~i~~A 29 (59)
T PF10531_consen 11 PGTYELPPGTTLSDAIAQA 29 (59)
T ss_dssp -EEEEEETT-BHHHHHHCT
T ss_pred CEEEEECCCCcHHHHHHHh
Confidence 3467889999999999864
No 54
>PF02641 DUF190: Uncharacterized ACR, COG1993; InterPro: IPR003793 This is an uncharacterised domain found in proteins of unknown function.; PDB: 2DCL_C 1O51_A.
Probab=57.42 E-value=40 Score=22.30 Aligned_cols=64 Identities=19% Similarity=0.272 Sum_probs=37.6
Q ss_pred eEEEEcCCCCeeeEEecCCCcHHHHHHHHHHhcCCCCCceEEEeC----CCCcccccCCCCCCcCC-ceeEEEeecc
Q psy7980 11 LLRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKPEMCTAYDS----NTGVSLQWDTDSDHLPT-TEIRVEVMEG 82 (93)
Q Consensus 11 ~irv~LPn~QrT~V~vrpG~tlrdaL~Kalk~R~L~~~~C~Vy~~----~~~~~i~wdtD~~~L~~-eEl~Ve~ld~ 82 (93)
++|+|+=++++ -.|..+.++|...++..|+. -+.||++ +....+. ..+.-.++. --+.||+.|.
T Consensus 5 ~Lriy~~e~~~-----~~g~~l~~~ll~~~~~~gi~--GaTV~rgi~G~G~~~~ih-~~~~~~l~~~lPvvIe~id~ 73 (101)
T PF02641_consen 5 LLRIYLSESDR-----WGGKPLYEWLLERAREAGIA--GATVFRGIEGFGSSGRIH-SARLLELSDDLPVVIEFIDT 73 (101)
T ss_dssp EEEEEEETT-E-----ETTEEHHHHHHHHHHHTT-S--EEEEEE-SEEEE--------------TTS-EEEEEEEEE
T ss_pred EEEEEEcCccc-----cCceEHHHHHHHHHHHCCCC--eEEEEcceeeeCCCCccc-ccchhhhcCCCCEEEEEEcC
Confidence 68999999876 48999999999999997775 5899993 2322221 123333433 3556777664
No 55
>cd01767 UBX UBX (ubiquitin regulatory X) domain. The UBX (ubiquitin regulatory X) domain has a beta-grasp fold that is structurally quite similar to ubiquitin although UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins. Most UBX-containing proteins including p47, FAF1, and SAKS1 (Y33K) also contain a UBA (ubiquitin-associated) domain and are thought to serve as adaptor molecules that shuttle proteins to the proteasome for degradation.
Probab=56.58 E-value=20 Score=22.13 Aligned_cols=32 Identities=13% Similarity=0.173 Sum_probs=25.6
Q ss_pred eEEEEcCCCCeeeEEecCCCcHHHHHHHHHHh
Q psy7980 11 LLRAQLPNQQRTSVHIRKGQTLLEALSKAMKL 42 (93)
Q Consensus 11 ~irv~LPn~QrT~V~vrpG~tlrdaL~Kalk~ 42 (93)
.|++=||||.+-...+.+.-||.|.-.=.-..
T Consensus 4 ~i~iRlpdG~~~~~~F~~~~tl~~l~~fv~~~ 35 (77)
T cd01767 4 KIQIRLPDGKRLEQRFNSTHKLSDVRDFVESN 35 (77)
T ss_pred EEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHc
Confidence 58999999999999999999988755544333
No 56
>PLN00129 succinate dehydrogenase [ubiquinone] iron-sulfur subunit
Probab=56.40 E-value=39 Score=26.79 Aligned_cols=67 Identities=15% Similarity=0.136 Sum_probs=43.0
Q ss_pred CeeeEEecC-CCcHHHHHHHHHHhcC-----------CCCCceEEEeCCCCcccccCCCCCCcCCceeEEEeeccccccc
Q psy7980 20 QRTSVHIRK-GQTLLEALSKAMKLRN-----------LKPEMCTAYDSNTGVSLQWDTDSDHLPTTEIRVEVMEGNLALS 87 (93)
Q Consensus 20 QrT~V~vrp-G~tlrdaL~Kalk~R~-----------L~~~~C~Vy~~~~~~~i~wdtD~~~L~~eEl~Ve~ld~~p~~~ 87 (93)
|--.|++.+ |+|+-|+|.++=++.. =..-.|++...|. ..+-=.|-+..+.+++|.||=|.+||.++
T Consensus 62 ~~y~v~~~~~~~tVLd~L~~Ik~~~D~sLsfr~sCr~giCGsCam~ING~-p~LAC~t~v~~~~~~~i~iePl~~fpVir 140 (276)
T PLN00129 62 QSYKVDLNDCGPMVLDVLIKIKNEQDPSLTFRRSCREGICGSCAMNIDGK-NTLACLTKIDRDESGPTTITPLPHMFVIK 140 (276)
T ss_pred EEEEeCCCCCCchHHHHHHHHHHcCCCCeEEeccCCCCCCCCCeeEECCc-ccccccccHhhcCCCcEEEEECCCCCeee
Confidence 334788876 9999999998543311 1334566666432 33444444444555789999999999764
No 57
>cd01802 AN1_N ubiquitin-like domain of AN1. AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.
Probab=55.08 E-value=61 Score=21.67 Aligned_cols=47 Identities=9% Similarity=0.085 Sum_probs=40.5
Q ss_pred CceEEEEcCCCCeeeEEecCCCcHHHHHHHHHHhcCCCCC-ceEEEeC
Q psy7980 9 GILLRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKPE-MCTAYDS 55 (93)
Q Consensus 9 ~~~irv~LPn~QrT~V~vrpG~tlrdaL~Kalk~R~L~~~-~C~Vy~~ 55 (93)
.+.|-|-..+|+...++|.+..|+.+-=.++-++.|++++ +-.+|.+
T Consensus 27 ~M~I~Vk~l~G~~~~leV~~~~TV~~lK~kI~~~~gip~~~QrLi~~G 74 (103)
T cd01802 27 TMELFIETLTGTCFELRVSPFETVISVKAKIQRLEGIPVAQQHLIWNN 74 (103)
T ss_pred CEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEECC
Confidence 5667888889998999999999999999999999999888 6666664
No 58
>PF15016 DUF4520: Domain of unknown function (DUF4520)
Probab=53.83 E-value=37 Score=22.69 Aligned_cols=33 Identities=12% Similarity=0.151 Sum_probs=25.2
Q ss_pred CceEEEEcCCCCeeeEEecCCCcHHHHHHHHHH
Q psy7980 9 GILLRAQLPNQQRTSVHIRKGQTLLEALSKAMK 41 (93)
Q Consensus 9 ~~~irv~LPn~QrT~V~vrpG~tlrdaL~Kalk 41 (93)
.+.++..+||+|...|++........=+.-|++
T Consensus 48 ~~~c~l~~pDG~~~~i~i~~p~~y~rYV~~al~ 80 (85)
T PF15016_consen 48 LGWCKLTFPDGQQVLIQIEHPGPYERYVTAALE 80 (85)
T ss_pred CCEEEEEccCCCEEEEEccCCchhHHHHHHHHh
Confidence 568999999999999999766555555555554
No 59
>PTZ00038 ferredoxin; Provisional
Probab=53.61 E-value=24 Score=26.77 Aligned_cols=28 Identities=14% Similarity=0.311 Sum_probs=21.4
Q ss_pred eEEEEcCCCCeeeEEecCCCcHHHHHHHH
Q psy7980 11 LLRAQLPNQQRTSVHIRKGQTLLEALSKA 39 (93)
Q Consensus 11 ~irv~LPn~QrT~V~vrpG~tlrdaL~Ka 39 (93)
.+.+.+|++. ..+++.+|.||-||+.++
T Consensus 97 ~Vt~~~~~g~-~~~~v~~geTILdAae~a 124 (191)
T PTZ00038 97 NITLQTPDGE-KVIECDEDEYILDAAERQ 124 (191)
T ss_pred EEEEEeCCCc-EEEEeCCCCcHHHHHHHc
Confidence 3666678885 459999999999987643
No 60
>PF00794 PI3K_rbd: PI3-kinase family, ras-binding domain; InterPro: IPR000341 Phosphatidylinositol 3-kinase (PI3K) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. A subset of PI3Ks has the capacity to bind and be activated by the GTP-bound small GTPase p21Ras (Ras). PI3Ks are recognised as one of the principal effectors of Ras signalling to the cell-cycle control machinery. In the structure of the Ras-PI3K gamma complex, contacts between the two molecules are made primarily via the so-called switch I region of Ras and the PI3K RBD. The RBD fold comprises a five-stranded mixed beta-sheet, flanked by two alpha-helices. Interaction between Ras and the PI3K RBD is primarily polar in character and, as characterised by kinetic measurements, is reversible and transient [].; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0005942 phosphatidylinositol 3-kinase complex; PDB: 2RD0_A 3HIZ_A 3HHM_A 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 2Y3A_A 3L54_A ....
Probab=50.36 E-value=42 Score=22.04 Aligned_cols=34 Identities=21% Similarity=0.258 Sum_probs=29.8
Q ss_pred CceEEEEcC-CCCeeeEEecCCCcHHHHHHHHHHh
Q psy7980 9 GILLRAQLP-NQQRTSVHIRKGQTLLEALSKAMKL 42 (93)
Q Consensus 9 ~~~irv~LP-n~QrT~V~vrpG~tlrdaL~Kalk~ 42 (93)
+-.+.||.+ +++..++.+-+..|..+.+..++++
T Consensus 16 ~i~v~v~~~~~~~~~t~~~~~~~t~~~li~~~l~k 50 (106)
T PF00794_consen 16 KIKVSVHFENSQQSFTFQVDPNSTPEELIAQALKK 50 (106)
T ss_dssp EEEEEEEETTCSEEEEEEEETTS-HHHHHHHHHHH
T ss_pred eEEEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHH
Confidence 447999999 7888899999999999999999998
No 61
>PRK08364 sulfur carrier protein ThiS; Provisional
Probab=49.94 E-value=59 Score=20.00 Aligned_cols=40 Identities=18% Similarity=0.291 Sum_probs=28.1
Q ss_pred EEEEcCCCC--eeeEEecCCCcHHHHHHHHHHhcCCCCCceEEEeCC
Q psy7980 12 LRAQLPNQQ--RTSVHIRKGQTLLEALSKAMKLRNLKPEMCTAYDSN 56 (93)
Q Consensus 12 irv~LPn~Q--rT~V~vrpG~tlrdaL~Kalk~R~L~~~~C~Vy~~~ 56 (93)
+++.+ |++ -..+++.+|.|+.|.|... ++.++.++|...+
T Consensus 5 m~v~v-ng~~~~~~~~~~~~~tv~~ll~~l----~~~~~~v~v~vNg 46 (70)
T PRK08364 5 IRVKV-IGRGIEKEIEWRKGMKVADILRAV----GFNTESAIAKVNG 46 (70)
T ss_pred EEEEE-eccccceEEEcCCCCcHHHHHHHc----CCCCccEEEEECC
Confidence 44444 554 3467889999999887543 8888888888753
No 62
>smart00266 CAD Domains present in proteins implicated in post-mortem DNA fragmentation.
Probab=49.93 E-value=33 Score=22.50 Aligned_cols=46 Identities=22% Similarity=0.145 Sum_probs=31.6
Q ss_pred CCCcHHHHHHHHHHhcCCCCCceEEEeCCCCcccccCCCCCCcCCc
Q psy7980 28 KGQTLLEALSKAMKLRNLKPEMCTAYDSNTGVSLQWDTDSDHLPTT 73 (93)
Q Consensus 28 pG~tlrdaL~Kalk~R~L~~~~C~Vy~~~~~~~i~wdtD~~~L~~e 73 (93)
-+-+|.|-+.|++++=++....|.+|...+...++=+.=-..|+.+
T Consensus 17 ~A~sL~eL~~K~~~~l~l~~~~~~l~L~eDGT~VddEeyF~tLp~n 62 (74)
T smart00266 17 AASSLEELLSKVCDKLALPDSPVTLVLEEDGTIVDDEEYFQTLPDN 62 (74)
T ss_pred EcCCHHHHHHHHHHHhCCCCCCcEEEEecCCcEEccHHHHhcCCCC
Confidence 3458999999999999998889998885444444333323334333
No 63
>TIGR02007 fdx_isc ferredoxin, 2Fe-2S type, ISC system. This family consists of proteobacterial ferredoxins associated with and essential to the ISC system of 2Fe-2S cluster assembly. This family is closely related to (but excludes) eukaryotic (mitochondrial) adrenodoxins, which are ferredoxins involved in electron transfer to P450 cytochromes.
Probab=49.78 E-value=19 Score=24.10 Aligned_cols=29 Identities=17% Similarity=0.343 Sum_probs=20.7
Q ss_pred eeEEecCCCcHHHHHHHHHHhcCC----------CCCceEEEe
Q psy7980 22 TSVHIRKGQTLLEALSKAMKLRNL----------KPEMCTAYD 54 (93)
Q Consensus 22 T~V~vrpG~tlrdaL~Kalk~R~L----------~~~~C~Vy~ 54 (93)
.++++.+|.||.||+.. .|+ ....|.|+.
T Consensus 16 ~~~~~~~g~tLL~a~~~----~gi~i~~~CgG~G~CgtC~v~V 54 (110)
T TIGR02007 16 AVVEAKPGETILDVALD----NGIEIEHACEKSCACTTCHCIV 54 (110)
T ss_pred eEEEECCCChHHHHHHH----cCCCccccCCCCceeCCCEEEE
Confidence 46899999999988753 333 444677777
No 64
>COG3377 Uncharacterized conserved protein [Function unknown]
Probab=49.72 E-value=9.1 Score=26.45 Aligned_cols=15 Identities=40% Similarity=0.496 Sum_probs=13.3
Q ss_pred EEecCCCcHHHHHHH
Q psy7980 24 VHIRKGQTLLEALSK 38 (93)
Q Consensus 24 V~vrpG~tlrdaL~K 38 (93)
+.+++||+.||||.|
T Consensus 80 lGI~~Gm~~r~aL~k 94 (95)
T COG3377 80 LGIKRGMKGREALEK 94 (95)
T ss_pred hCCCccchHHHHHhc
Confidence 567899999999987
No 65
>PRK12577 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=49.11 E-value=50 Score=26.27 Aligned_cols=68 Identities=16% Similarity=0.226 Sum_probs=42.0
Q ss_pred CCeeeEEecCCCcHHHHHHHHHHhc--------CC---CCCceEEEeCCCCcccccCCCCCC-c---------CCceeEE
Q psy7980 19 QQRTSVHIRKGQTLLEALSKAMKLR--------NL---KPEMCTAYDSNTGVSLQWDTDSDH-L---------PTTEIRV 77 (93)
Q Consensus 19 ~QrT~V~vrpG~tlrdaL~Kalk~R--------~L---~~~~C~Vy~~~~~~~i~wdtD~~~-L---------~~eEl~V 77 (93)
=|.-.|++.+|+|+-|||.++=..- +. ....|+|-..|. ..+.=.|.+.. | .+++|.+
T Consensus 18 ~~~~~v~~~~~~tvL~~l~~i~~~~d~tL~~~~~c~~~~Cg~C~v~inG~-~~laC~t~v~~~~~~~~~~~~~~~~~i~i 96 (329)
T PRK12577 18 VQTYTLEVEPGNTILDCLNRIKWEQDGSLAFRKNCRNTICGSCAMRINGR-SALACKENVGSELARLSDSNSGAIPEITI 96 (329)
T ss_pred EEEEEEECCCCChHHHHHHHhCCcCCCCcEEcCCCCCCCCCCCEEEECCe-eecCcccchhhhhccccccccCCCCeEEE
Confidence 3677899999999999998762211 11 122477776443 12222333322 1 2478999
Q ss_pred Eeeccccccc
Q psy7980 78 EVMEGNLALS 87 (93)
Q Consensus 78 e~ld~~p~~~ 87 (93)
|=|.++|.++
T Consensus 97 ePl~~~pvik 106 (329)
T PRK12577 97 APLGNMPVIK 106 (329)
T ss_pred EECCCCCccc
Confidence 9999999764
No 66
>cd01783 DAGK_delta_RA Ubiquitin-like domain of Diacylgylcerol kinase (DAGK). DAGK_delta_RA Diacylgylcerol kinase (DAGK) phosphorylates the second messenger diacylglycerol to phosphatidic acid as part of a protein kinase C pathway. Nine mammalian DAGK isotypes have been identified, which are classified into five subgroups according to their domain architecture and the DAGK-delta and -theta isozymes, which fall into one such group, contain an RA (Ras-associated) domain. DAGKs also contain a conserved catalytic domain (DAGKc), an assesory domain (DAGKa), and an array of conserved motifs that are likely to play a role in lipid-protein and protein-protein interactions in various DAG/PA-dependent signalling pathways.
Probab=48.92 E-value=70 Score=21.96 Aligned_cols=34 Identities=18% Similarity=0.324 Sum_probs=28.2
Q ss_pred eeeEEecCCCcHHHHHHHHHHhcCCCCCceEEEe
Q psy7980 21 RTSVHIRKGQTLLEALSKAMKLRNLKPEMCTAYD 54 (93)
Q Consensus 21 rT~V~vrpG~tlrdaL~Kalk~R~L~~~~C~Vy~ 54 (93)
.-+|.|-.-.|..|.+.-||++=|+.-+++.=|.
T Consensus 18 y~sv~V~~~tt~~dvv~eaL~kfGl~~~~~~~y~ 51 (97)
T cd01783 18 YVSIRVNKDTTVQDVILEVLPLFGLQAECPESFR 51 (97)
T ss_pred eEEEEecccchHHHHHHHHHHHhCcccCCccccE
Confidence 4588999999999999999999999776554444
No 67
>cd01772 SAKS1_UBX SAKS1-like UBX domain. SAKS1 (SAPK-substrate-1), also known as Y33K, is a widely expressed protein containing N-terminal UBA (ubiquitin-associated) and C-terminal UBX (ubiqiutin-like) domains that was identified as a substrate of stress-activated protein kinases (SAPKs). SAKS1 is related evolutionarily to two other UBA/UBX-containing proteins, p47 and Faf1. The UBA and UBX domains of SAKS1 bind ubiquitin tetramers and valosin-containing protein (VCP), respectively suggesting a role for SAKS1 as an adaptor that directs VCP to polyubiquitinated proteins facilitating its destruction by the proteasome. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=47.99 E-value=35 Score=21.53 Aligned_cols=35 Identities=6% Similarity=-0.051 Sum_probs=28.9
Q ss_pred ceEEEEcCCCCeeeEEecCCCcHHHHHHHHHHhcC
Q psy7980 10 ILLRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRN 44 (93)
Q Consensus 10 ~~irv~LPn~QrT~V~vrpG~tlrdaL~Kalk~R~ 44 (93)
..|++-||||++-...+...-||.|.-.-....++
T Consensus 5 ~~i~iRlp~G~~~~~~F~~~~tl~~v~~fV~~~~~ 39 (79)
T cd01772 5 TRIQIRLLDGTTLKQTFKAREQLAAVRLFVELNTG 39 (79)
T ss_pred EEEEEECCCCCEEEEEeCCCChHHHHHHHHHHcCC
Confidence 35899999999999999999999988776665543
No 68
>COG0479 FrdB Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit [Energy production and conversion]
Probab=47.72 E-value=1.2e+02 Score=23.67 Aligned_cols=75 Identities=20% Similarity=0.155 Sum_probs=49.8
Q ss_pred EEEEcCCC-----CeeeEEecCCCcHHHHHHHHHHh-----------cCCCCCceEEEeCCCCcccccCCCCCCcCCcee
Q psy7980 12 LRAQLPNQ-----QRTSVHIRKGQTLLEALSKAMKL-----------RNLKPEMCTAYDSNTGVSLQWDTDSDHLPTTEI 75 (93)
Q Consensus 12 irv~LPn~-----QrT~V~vrpG~tlrdaL~Kalk~-----------R~L~~~~C~Vy~~~~~~~i~wdtD~~~L~~eEl 75 (93)
|.-|=|.. |.-.|++.+|+|+-|||.++=+. |+=..-.|++...|. ..+.=.|-+..+.+.+|
T Consensus 7 i~R~~p~~~~p~~~~yev~~~~~~~vLdaL~~Ik~e~d~~Lsfr~sCR~gICGSCam~ING~-prLAC~t~~~~~~~~~i 85 (234)
T COG0479 7 IYRYNPDDDKPYWQTYEVPYDEGMTVLDALLYIKEEQDPTLSFRRSCREGICGSCAMNINGK-PRLACKTLMKDLEEGVI 85 (234)
T ss_pred EEEECCCCCCcceEEEEecCCCCCcHHHHHHHHHHhcCCccchhhhccCCcCCcceeEECCc-cccchhchhhhccCCce
Confidence 44455554 66778999999999999976532 122345567666433 23455555555555589
Q ss_pred EEEeeccccccc
Q psy7980 76 RVEVMEGNLALS 87 (93)
Q Consensus 76 ~Ve~ld~~p~~~ 87 (93)
.||=|.+||.++
T Consensus 86 ~iePL~~fpVIk 97 (234)
T COG0479 86 TIEPLPNFPVIR 97 (234)
T ss_pred EEEECCCCCcee
Confidence 999999999654
No 69
>cd01784 rasfadin_RA Ubiquitin-like domain of Rasfadin. rasfadin_RA Rasfadin (RASSF2) belongs to a family of Ras effectors/tumor suppressors that includes RASSF1 and NORE1. RASSF2 binds directly to K-Ras in a GTP-dependent manner via its RA (RAS-associated) domain. RASSF2 promotes apoptosis and cell cycle arrest and is frequently down-regulated in lung tumor cell lines
Probab=47.52 E-value=39 Score=22.92 Aligned_cols=41 Identities=20% Similarity=0.152 Sum_probs=36.1
Q ss_pred EEcCC-CCeeeEEecCCCcHHHHHHHHHHhcCC--CCCceEEEe
Q psy7980 14 AQLPN-QQRTSVHIRKGQTLLEALSKAMKLRNL--KPEMCTAYD 54 (93)
Q Consensus 14 v~LPn-~QrT~V~vrpG~tlrdaL~Kalk~R~L--~~~~C~Vy~ 54 (93)
+|+|. +.-|.|.|-.-+|.++.|.-.|++=-. +|+.=+.|.
T Consensus 6 ~f~P~~gs~~~v~VsS~~tt~eVI~~LL~KFkv~~~p~~FALy~ 49 (87)
T cd01784 6 VFTPAYGSVTNVRINSTMTTPQVLKLLLNKFKIENSAEEFALYI 49 (87)
T ss_pred EeCCCCCceeEEEEecCCCHHHHHHHHHHhccccCCHHHeEEEE
Confidence 79999 999999999999999999999988765 667777777
No 70
>smart00213 UBQ Ubiquitin homologues. Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression
Probab=46.60 E-value=53 Score=18.45 Aligned_cols=42 Identities=14% Similarity=0.144 Sum_probs=33.6
Q ss_pred eEEEEcCCCCeeeEEecCCCcHHHHHHHHHHhcCCCCCceEEE
Q psy7980 11 LLRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKPEMCTAY 53 (93)
Q Consensus 11 ~irv~LPn~QrT~V~vrpG~tlrdaL~Kalk~R~L~~~~C~Vy 53 (93)
.|+|-.++ ....+.|.+..|+.+--.+..+.-|++++....+
T Consensus 2 ~i~vk~~~-~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~~~L~ 43 (64)
T smart00213 2 ELTVKTLD-GTITLEVKPSDTVSELKEKIAELTGIPVEQQRLI 43 (64)
T ss_pred EEEEEECC-ceEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEE
Confidence 36677788 5778999999999999999988999988744433
No 71
>PRK01777 hypothetical protein; Validated
Probab=46.42 E-value=30 Score=23.25 Aligned_cols=29 Identities=28% Similarity=0.437 Sum_probs=21.7
Q ss_pred cCCCCe-eeEEecCCCcHHHHHHHHHHhcCCCCC
Q psy7980 16 LPNQQR-TSVHIRKGQTLLEALSKAMKLRNLKPE 48 (93)
Q Consensus 16 LPn~Qr-T~V~vrpG~tlrdaL~Kalk~R~L~~~ 48 (93)
+|+.|. -.+++.+|.|+.|||... ||..+
T Consensus 12 ~~~~~~~~~l~vp~GtTv~dal~~s----gi~~~ 41 (95)
T PRK01777 12 LPERQYLQRLTLQEGATVEEAIRAS----GLLEL 41 (95)
T ss_pred CCCceEEEEEEcCCCCcHHHHHHHc----CCCcc
Confidence 777765 457899999999998754 66444
No 72
>COG2818 Tag 3-methyladenine DNA glycosylase [DNA replication, recombination, and repair]
Probab=46.16 E-value=15 Score=28.13 Aligned_cols=17 Identities=47% Similarity=0.622 Sum_probs=14.3
Q ss_pred CcHHHHHHHHHHhcCCC
Q psy7980 30 QTLLEALSKAMKLRNLK 46 (93)
Q Consensus 30 ~tlrdaL~Kalk~R~L~ 46 (93)
-.+-++++|+||+||+.
T Consensus 140 t~~S~~mskaLKkrGf~ 156 (188)
T COG2818 140 TELSDAMSKALKKRGFK 156 (188)
T ss_pred chhHHHHHHHHHHccCe
Confidence 45678999999999974
No 73
>cd01615 CIDE_N CIDE_N domain, found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins, as well as CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD(DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of ICAD/DFF45, and the CAD/DFF40 and CIDE nucleases during apoptosis. The CIDE-N domain is also found in the FSP27/CIDE-C protein.
Probab=45.95 E-value=42 Score=22.14 Aligned_cols=35 Identities=26% Similarity=0.213 Sum_probs=27.7
Q ss_pred CCCcHHHHHHHHHHhcCCCCCceEEEeCCCCcccc
Q psy7980 28 KGQTLLEALSKAMKLRNLKPEMCTAYDSNTGVSLQ 62 (93)
Q Consensus 28 pG~tlrdaL~Kalk~R~L~~~~C~Vy~~~~~~~i~ 62 (93)
-+-+|.|-+.|++++=++..+.|.++...+...|+
T Consensus 19 ~A~sL~eL~~K~~~~l~l~~~~~~lvL~eDGTeVd 53 (78)
T cd01615 19 AASSLEELLSKACEKLKLPSAPVTLVLEEDGTEVD 53 (78)
T ss_pred EcCCHHHHHHHHHHHcCCCCCCeEEEEeCCCcEEc
Confidence 45689999999999999987889888854444443
No 74
>PRK11872 antC anthranilate dioxygenase reductase; Provisional
Probab=45.89 E-value=31 Score=26.97 Aligned_cols=27 Identities=15% Similarity=0.226 Sum_probs=21.6
Q ss_pred EEEEcCCCCeeeEEecCCCcHHHHHHH
Q psy7980 12 LRAQLPNQQRTSVHIRKGQTLLEALSK 38 (93)
Q Consensus 12 irv~LPn~QrT~V~vrpG~tlrdaL~K 38 (93)
+++-++|++...+++.+|.||-||+.+
T Consensus 5 v~~~~~~~~~~~~~~~~g~tlL~a~~~ 31 (340)
T PRK11872 5 VALSFADGKTLFFPVGKDELLLDAALR 31 (340)
T ss_pred EEEEecCCcEEEEEeCCCCcHHHHHHH
Confidence 344448998888999999999998764
No 75
>cd01776 Rin1_RA Ubiquitin domain of RIN1 RAS effector. Rin1_RA RIN1 is a RAS effector that binds with specificity and high affinity to activated RAS via its carboxy-terminal RA (RAS-associated) domain. RIN1 competes directly with RAF1 for RAS binding and is thought to divert signaling away from RAF and the MAPK pathway while also shunting RAS signals through alternate pathways. In addition, Rin1 and Rin2 are Rab5-binding proteins, binding preferentially to the GTP-bound form, that enhance the GDP-GTP exchange reaction on Rab5 that regulate the docking and fusion processes of endocytic vesicles. In addition to the RA domain, RIN1 and RIN2 have an SH2 (Src homology 2) domain, a proline-rich SH3 domain, and a Vps9 domain.
Probab=45.39 E-value=77 Score=21.59 Aligned_cols=56 Identities=18% Similarity=0.121 Sum_probs=37.1
Q ss_pred eEEEEc----CCCCeeeEEecCCCcHHHHHHHHHHhcCC-CCCceEEEe--CCCCcccccCCC
Q psy7980 11 LLRAQL----PNQQRTSVHIRKGQTLLEALSKAMKLRNL-KPEMCTAYD--SNTGVSLQWDTD 66 (93)
Q Consensus 11 ~irv~L----Pn~QrT~V~vrpG~tlrdaL~Kalk~R~L-~~~~C~Vy~--~~~~~~i~wdtD 66 (93)
++||-+ |..|.-+..|+|+.|.+|.=.---++-.+ +|+.=..|. .++-..++=|+-
T Consensus 1 ~l~Va~q~~~sgct~KTL~V~P~~tt~~vc~lcA~Kf~V~qPe~y~LFl~vdg~~~qLadd~~ 63 (87)
T cd01776 1 YLRVAFQDVNSGCTGKTLLVRPYITTEDVCQLCAEKFKVTQPEEYSLFLFVEETWQQLAPDTY 63 (87)
T ss_pred CeeEEeecCCCCceeeeeecCCCCcHHHHHHHHHHHhccCChhheeEEEEECCcEEEcCcccc
Confidence 356666 56788899999999999854444444444 788877777 455545444443
No 76
>PF07660 STN: Secretin and TonB N terminus short domain; InterPro: IPR011662 This is a conserved region found at the N-terminal region of bacterial proteins involved in either protein secretion or the uptake of selective substrates, including: Bundle-forming pilus protein B, an outer-membrane protein absolutely required for pilus biogenesis, and for enteropathogenic Escherichia coli localized adherence and autoaggregation []. PilQ, which is required for type IV pilus biogenesis and competence and is thought to function both as a pore for exit of the pilus and as a channel for entry of haem and antimicrobial agents and uptake of transforming DNA []. PupB, a specific receptor for the siderophores ferric pseudobactin BN8 and ferric pseudobactin BN7, iron chelating molecules that allow the organism to extract iron from the environment, especially under iron-restricted conditions []. TonB, which couples the electrochemical potential of the cytoplasmic membrane to the active transport of iron-siderophores and vitamin B12 across the outer membrane []. ; GO: 0019867 outer membrane; PDB: 2D1U_A 1ZZV_A 2W75_B 2O5P_A 2W77_A 2W16_A 2W6U_B 2W6T_A 2W76_B 2W78_B ....
Probab=45.16 E-value=15 Score=20.84 Aligned_cols=27 Identities=30% Similarity=0.379 Sum_probs=17.8
Q ss_pred CeeeEEecCCCcHHHHHHHHHHhcCCCC
Q psy7980 20 QRTSVHIRKGQTLLEALSKAMKLRNLKP 47 (93)
Q Consensus 20 QrT~V~vrpG~tlrdaL~Kalk~R~L~~ 47 (93)
+...+++ -.+++.+||...|+.-||.-
T Consensus 14 ~~vsl~~-~~~~~~~~L~~ll~~t~l~y 40 (52)
T PF07660_consen 14 KKVSLDV-KNMSLEEALDQLLKGTGLTY 40 (52)
T ss_dssp BE--EE--EEE-HHHHHHHHTTTSTEEE
T ss_pred cceeEEc-CCcCHHHHHHHHHccCCcEE
Confidence 3444444 45899999999999988853
No 77
>PF14848 HU-DNA_bdg: DNA-binding domain
Probab=44.21 E-value=17 Score=24.97 Aligned_cols=26 Identities=31% Similarity=0.450 Sum_probs=21.3
Q ss_pred EEcCCCCeeeEEecCCCcHHHHHHHH
Q psy7980 14 AQLPNQQRTSVHIRKGQTLLEALSKA 39 (93)
Q Consensus 14 v~LPn~QrT~V~vrpG~tlrdaL~Ka 39 (93)
.|=|+.-.-.|.++||..++++|++.
T Consensus 92 ~f~~~~~~~~v~f~pg~~lk~al~~~ 117 (124)
T PF14848_consen 92 SFDPNIHKITVNFTPGKELKEALKNT 117 (124)
T ss_pred ccccccceeEEEeeeCHHHHHHHHhC
Confidence 45566667789999999999999863
No 78
>cd01793 Fubi Fubi ubiquitin-like protein. Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.
Probab=44.10 E-value=67 Score=19.53 Aligned_cols=37 Identities=11% Similarity=0.161 Sum_probs=30.6
Q ss_pred CCeeeEEecCCCcHHHHHHHHHHhcCCCCC-ceEEEeC
Q psy7980 19 QQRTSVHIRKGQTLLEALSKAMKLRNLKPE-MCTAYDS 55 (93)
Q Consensus 19 ~QrT~V~vrpG~tlrdaL~Kalk~R~L~~~-~C~Vy~~ 55 (93)
++-..++|.|..|+.|.=.+.-..-|++++ ...+|.+
T Consensus 8 ~~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~Li~~G 45 (74)
T cd01793 8 QNTHTLEVTGQETVSDIKAHVAGLEGIDVEDQVLLLAG 45 (74)
T ss_pred CCEEEEEECCcCcHHHHHHHHHhhhCCCHHHEEEEECC
Confidence 345678999999999999999999999888 5666664
No 79
>PRK09189 uroporphyrinogen-III synthase; Validated
Probab=43.23 E-value=17 Score=26.58 Aligned_cols=30 Identities=10% Similarity=0.186 Sum_probs=26.0
Q ss_pred ecCCCcHHHHHHHHHHhcCCCCCceEEEeC
Q psy7980 26 IRKGQTLLEALSKAMKLRNLKPEMCTAYDS 55 (93)
Q Consensus 26 vrpG~tlrdaL~Kalk~R~L~~~~C~Vy~~ 55 (93)
+--|..-++-|.+.|+.+|...+.+.||+.
T Consensus 123 ~~rg~~~r~~l~~~L~~~G~~v~~~~vY~~ 152 (240)
T PRK09189 123 YLAGRPRAPVFEDRLAAAGIPFRVAECYDM 152 (240)
T ss_pred EeccCcccchhHHHHHhCCCeeEEEEEEEe
Confidence 334777889999999999999999999983
No 80
>cd01775 CYR1_RA Ubiquitin domain of CYR1 adenylate cyclase. CYR1 is a fungal adenylate cyclase with at least four domains, an N-terminal RA (Ras association) domain, a middle leucine-rich repeat domain, a catalytic domain. The N-terminal RA domain of CYR1 post-translationally modifies a small GTPase called Ras. The Ras-CYR1 pathway has been implicated in the transduction of a glucose-triggered signal to an intracellular environment where a protein phosphorylation cascade is initiated by cyclic AMP.
Probab=41.63 E-value=88 Score=21.58 Aligned_cols=38 Identities=16% Similarity=0.077 Sum_probs=32.4
Q ss_pred eEEEEcCCCCeeeEEecCCCcHHHHHHHHHHhcCCCCC
Q psy7980 11 LLRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKPE 48 (93)
Q Consensus 11 ~irv~LPn~QrT~V~vrpG~tlrdaL~Kalk~R~L~~~ 48 (93)
.||||=.|+..+++.+-...|+.|.+.-.-++-.++.+
T Consensus 4 ~IRIFr~D~Tf~Tls~~l~tTv~eli~~L~rK~~l~~~ 41 (97)
T cd01775 4 CIRVFRSDGTFTTLSCPLNTTVSELIPQLAKKFYLPSG 41 (97)
T ss_pred EEEEEecCCcEEEEEcCCcCcHHHHHHHHHHhhcCCCC
Confidence 69999999999999999999999988766666666553
No 81
>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF. NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.
Probab=41.24 E-value=90 Score=19.61 Aligned_cols=45 Identities=20% Similarity=0.263 Sum_probs=36.2
Q ss_pred eEEEEcCCCCee-eEE-ecCCCcHHHHHHHHHHhcCCCCC-ceEEEeC
Q psy7980 11 LLRAQLPNQQRT-SVH-IRKGQTLLEALSKAMKLRNLKPE-MCTAYDS 55 (93)
Q Consensus 11 ~irv~LPn~QrT-~V~-vrpG~tlrdaL~Kalk~R~L~~~-~C~Vy~~ 55 (93)
.|-|-.++|+.+ .++ +.+..|+.+-=.++.+.-|++++ ...+|.+
T Consensus 2 ~I~vk~~~G~~~~~l~~v~~~~TV~~lK~~i~~~~gi~~~~QrLi~~G 49 (78)
T cd01797 2 WIQVRTMDGKETRTVDSLSRLTKVEELREKIQELFNVEPECQRLFYRG 49 (78)
T ss_pred EEEEEcCCCCEEEEeeccCCcCcHHHHHHHHHHHhCCCHHHeEEEeCC
Confidence 355667788764 674 89999999999999999999888 7888874
No 82
>KOG0248|consensus
Probab=39.37 E-value=30 Score=31.85 Aligned_cols=28 Identities=32% Similarity=0.398 Sum_probs=26.2
Q ss_pred EEEEcCCCCeeeEEecCCCcHHHHHHHH
Q psy7980 12 LRAQLPNQQRTSVHIRKGQTLLEALSKA 39 (93)
Q Consensus 12 irv~LPn~QrT~V~vrpG~tlrdaL~Ka 39 (93)
|-||+||+..-+|.+---+-|.|||+|-
T Consensus 629 IpVhf~Ng~YqvVgFDgsQeiCDaiSkW 656 (936)
T KOG0248|consen 629 ISVKLPNSEYQIVEFDGKQKLCDALSTW 656 (936)
T ss_pred eeeeccCCeeEEEeecchHHHHHHHHHH
Confidence 8999999999999999889999999983
No 83
>PF03658 Ub-RnfH: RnfH family Ubiquitin; InterPro: IPR005346 This is a small family of proteins of unknown function.; PDB: 2HJ1_B.
Probab=39.24 E-value=40 Score=22.45 Aligned_cols=23 Identities=26% Similarity=0.546 Sum_probs=18.0
Q ss_pred cCCCCee-eEEecCCCcHHHHHHH
Q psy7980 16 LPNQQRT-SVHIRKGQTLLEALSK 38 (93)
Q Consensus 16 LPn~QrT-~V~vrpG~tlrdaL~K 38 (93)
+|++|.. .+++-+|.|+.||+..
T Consensus 9 ~p~~q~~~~l~vp~GtTv~~Ai~~ 32 (84)
T PF03658_consen 9 LPERQVILTLEVPEGTTVAQAIEA 32 (84)
T ss_dssp ETTCEEEEEEEEETT-BHHHHHHH
T ss_pred CCCeEEEEEEECCCcCcHHHHHHH
Confidence 6887765 5789999999999874
No 84
>TIGR00624 tag DNA-3-methyladenine glycosylase I. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=39.16 E-value=31 Score=25.83 Aligned_cols=17 Identities=29% Similarity=0.407 Sum_probs=14.6
Q ss_pred CcHHHHHHHHHHhcCCC
Q psy7980 30 QTLLEALSKAMKLRNLK 46 (93)
Q Consensus 30 ~tlrdaL~Kalk~R~L~ 46 (93)
-.+-++|+|.||+||+.
T Consensus 136 t~~S~~lskdLKkrGfk 152 (179)
T TIGR00624 136 TPESKAMSKELKKRGFR 152 (179)
T ss_pred CHHHHHHHHHHHHcCCe
Confidence 34789999999999984
No 85
>PRK05659 sulfur carrier protein ThiS; Validated
Probab=37.44 E-value=62 Score=19.18 Aligned_cols=32 Identities=13% Similarity=0.212 Sum_probs=23.4
Q ss_pred CCCeeeEEecCCCcHHHHHHHHHHhcCCCCCceEEEeC
Q psy7980 18 NQQRTSVHIRKGQTLLEALSKAMKLRNLKPEMCTAYDS 55 (93)
Q Consensus 18 n~QrT~V~vrpG~tlrdaL~Kalk~R~L~~~~C~Vy~~ 55 (93)
|++ ..++..|.|+.|+|.. -|+.++..+|-..
T Consensus 6 NG~--~~~~~~~~tl~~lL~~----l~~~~~~vav~vN 37 (66)
T PRK05659 6 NGE--PRELPDGESVAALLAR----EGLAGRRVAVEVN 37 (66)
T ss_pred CCe--EEEcCCCCCHHHHHHh----cCCCCCeEEEEEC
Confidence 454 3467789999988763 5888888888763
No 86
>cd06535 CIDE_N_CAD CIDE_N domain of CAD nuclease. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD(DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of CAD/DFF40 and ICAD/DFF45 during apoptosis. In normal cells, DFF exists in the nucleus as a heterodimer composed of CAD/DFF40 as a latent nuclease and its chaperone and inhibitor subunit ICAD/DFF45. Apoptotic activation of caspase-3 results in the cleavage of DFF45/ICAD and the release of active DFF40/CAD nuclease.
Probab=37.18 E-value=62 Score=21.43 Aligned_cols=34 Identities=21% Similarity=0.167 Sum_probs=27.3
Q ss_pred CCCcHHHHHHHHHHhcCCCCCceEEEeCCCCccc
Q psy7980 28 KGQTLLEALSKAMKLRNLKPEMCTAYDSNTGVSL 61 (93)
Q Consensus 28 pG~tlrdaL~Kalk~R~L~~~~C~Vy~~~~~~~i 61 (93)
-+-+|.+-+.|++++=++....|.+|...+...+
T Consensus 19 ~A~sL~eL~~K~~~~l~l~~~~~~l~L~eDGTeV 52 (77)
T cd06535 19 AAKNLKELLRKGCRLLQLPCAGSRLCLYEDGTEV 52 (77)
T ss_pred EcCCHHHHHHHHHHHhCCCCCCcEEEEecCCcEe
Confidence 4568999999999999998888998885554444
No 87
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein. parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.
Probab=36.97 E-value=94 Score=18.55 Aligned_cols=39 Identities=8% Similarity=0.106 Sum_probs=32.1
Q ss_pred EcCCCCeeeEEecCCCcHHHHHHHHHHhcCCCCCceEEE
Q psy7980 15 QLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKPEMCTAY 53 (93)
Q Consensus 15 ~LPn~QrT~V~vrpG~tlrdaL~Kalk~R~L~~~~C~Vy 53 (93)
=.++|+...++|.|..|+.+-=.+..++-|++++.-..+
T Consensus 4 k~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~Li 42 (70)
T cd01798 4 RTNTGHTFPVEVDPDTDIKQLKEVVAKRQGVPPDQLRVI 42 (70)
T ss_pred EcCCCCEEEEEECCCChHHHHHHHHHHHHCCCHHHeEEE
Confidence 356788888999999999999999999999988844443
No 88
>PF13510 Fer2_4: 2Fe-2S iron-sulfur cluster binding domain; PDB: 1Y56_A 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=36.50 E-value=26 Score=22.34 Aligned_cols=17 Identities=47% Similarity=0.653 Sum_probs=13.2
Q ss_pred eEEecCCCcHHHHHHHH
Q psy7980 23 SVHIRKGQTLLEALSKA 39 (93)
Q Consensus 23 ~V~vrpG~tlrdaL~Ka 39 (93)
.+++.+|.||-+||.++
T Consensus 12 ~v~~~~G~til~al~~~ 28 (82)
T PF13510_consen 12 PVEVPPGETILEALLAA 28 (82)
T ss_dssp EEEEEET-BHHHHHHHT
T ss_pred EEEEcCCCHHHHHHHHC
Confidence 37888999999998764
No 89
>PF12053 DUF3534: Domain of unknown function (DUF3534); InterPro: IPR021922 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 150 amino acids in length. This domain is found associated with PF00595 from PFAM. This domain has a conserved GILD sequence motif. ; PDB: 2NS5_A.
Probab=34.96 E-value=53 Score=24.00 Aligned_cols=52 Identities=17% Similarity=0.192 Sum_probs=30.1
Q ss_pred CeeeEEecCC-CcHHHHHHHHHHh----cCCCCC-ceEEEe--CCCCcccccCCCCCCcC
Q psy7980 20 QRTSVHIRKG-QTLLEALSKAMKL----RNLKPE-MCTAYD--SNTGVSLQWDTDSDHLP 71 (93)
Q Consensus 20 QrT~V~vrpG-~tlrdaL~Kalk~----R~L~~~-~C~Vy~--~~~~~~i~wdtD~~~L~ 71 (93)
.+-+|+++.| +|+++.+.+|+++ .+..++ -+.|+. ....-.+|+|.=+..+.
T Consensus 10 ~~vvVPC~dg~~tV~~L~~~A~~RY~K~~~~~~~~~v~V~~l~~~dggiLd~DD~l~dV~ 69 (145)
T PF12053_consen 10 TRVVVPCGDGQLTVRDLIQQALRRYRKAKEKDPDYWVVVHHLEYTDGGILDPDDVLCDVV 69 (145)
T ss_dssp EEEEEEESSS---HHHHHHHHHHHHHHHTT--TTS-EEEEEEE-SSS-EE-TTS-HHHHS
T ss_pred eEEEEEeCCCCccHHHHHHHHhHhHHHhhccCCCceEEEeeEEecCCceeccccceeEec
Confidence 3678999999 9999988888754 455555 455655 23445788887655543
No 90
>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120. SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.
Probab=34.70 E-value=97 Score=19.00 Aligned_cols=38 Identities=11% Similarity=0.066 Sum_probs=31.9
Q ss_pred CCCeeeEEecCCCcHHHHHHHHHHhcCCCCC-ceEEEeC
Q psy7980 18 NQQRTSVHIRKGQTLLEALSKAMKLRNLKPE-MCTAYDS 55 (93)
Q Consensus 18 n~QrT~V~vrpG~tlrdaL~Kalk~R~L~~~-~C~Vy~~ 55 (93)
+++-..+++.++.|+.+-=.+.-..-|++++ +..+|.+
T Consensus 6 ~g~~~~l~v~~~~TV~~lK~~i~~~~gip~~~q~L~~~G 44 (76)
T cd01800 6 NGQMLNFTLQLSDPVSVLKVKIHEETGMPAGKQKLQYEG 44 (76)
T ss_pred CCeEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECC
Confidence 4566679999999999999998899999888 7777765
No 91
>CHL00134 petF ferredoxin; Validated
Probab=34.18 E-value=61 Score=21.28 Aligned_cols=26 Identities=12% Similarity=0.188 Sum_probs=19.5
Q ss_pred EEEcC---CCCeeeEEecCCCcHHHHHHH
Q psy7980 13 RAQLP---NQQRTSVHIRKGQTLLEALSK 38 (93)
Q Consensus 13 rv~LP---n~QrT~V~vrpG~tlrdaL~K 38 (93)
+|++. +++...+.+.+|.||-||+.+
T Consensus 5 ~v~~~~~~~~~~~~~~~~~~~tLL~a~~~ 33 (99)
T CHL00134 5 KVTLLSEEEGIDVTIDCPDDVYILDAAEE 33 (99)
T ss_pred EEEEEecCCCCeEEEEECCCCcHHHHHHH
Confidence 56664 445557999999999988764
No 92
>cd01778 RASSF1_RA Ubiquitin-like domain of RASSF1 tumour supproessor protein. RASSF1 (also known as RASSF3 and NORE1) is a tumour suppressor protein with a C-terminal Ras-associating (RA) domain that binds Ras. RASSF1 also binds the proapoptotic protein kinase MST1 and is thus thought to regulate the proapoptotic signalling pathway. RASSF1 also associates with microtubule-associated proteins like MAP1B and regulates tubulin polymerization. RASSF1 also binds CDC20 and regulates mitosis by inhibiting the anaphase-promoting complex and preventing degradation of cyclin A and cyclin B until the spindle checkpoint becomes fully operational.
Probab=34.00 E-value=74 Score=21.86 Aligned_cols=43 Identities=19% Similarity=0.281 Sum_probs=36.2
Q ss_pred eEEEEcCCCCeeeEEecCCCcHHHHHHHHHHhcCC--CCCceEEE
Q psy7980 11 LLRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNL--KPEMCTAY 53 (93)
Q Consensus 11 ~irv~LPn~QrT~V~vrpG~tlrdaL~Kalk~R~L--~~~~C~Vy 53 (93)
..-.|||-+.-+.|.|..-+|.++.|.-.|++=.+ .|+-=+.|
T Consensus 8 ~~sf~lp~~s~k~v~IsS~tTt~eVI~~LL~KF~v~~nP~kFALY 52 (96)
T cd01778 8 STSLPLPKDTAKHLHISSKTTVREVIEALLKKFLVVDNPRKFALF 52 (96)
T ss_pred EEEEeccCCceeEEEEecCCcHHHHHHHHHHhheeccCCcceEEE
Confidence 45579999999999999999999999998888765 55566677
No 93
>COG1724 Predicted RNA binding protein (dsRBD-like fold), HicA family [General function prediction only]
Probab=33.48 E-value=44 Score=21.69 Aligned_cols=30 Identities=27% Similarity=0.410 Sum_probs=23.5
Q ss_pred cCCCCeeeEEecCCCcHHH-HHHHHHHhcCC
Q psy7980 16 LPNQQRTSVHIRKGQTLLE-ALSKAMKLRNL 45 (93)
Q Consensus 16 LPn~QrT~V~vrpG~tlrd-aL~Kalk~R~L 45 (93)
=|++-+++|++-||..|.. -|.+++|..+|
T Consensus 35 Hp~~~~vtVP~Hp~~dl~~Gtl~~Ilkqa~l 65 (66)
T COG1724 35 HPDGGRVTVPFHPGEDLPPGTLRSILKQAGL 65 (66)
T ss_pred cCCCCEEEecCCCccccCcHHHHHHHHHhcC
Confidence 4888899999999998865 46667776665
No 94
>cd07051 BMC_like_1_repeat1 Bacterial Micro-Compartment (BMC)-like domain 1 repeat 1. BMC-like domains exist in cyanobacteria, proteobacteria, and actinobacteria and are homologs of the carboxysome shell proteins. They might be encoded from putative organelles involved in unknown metabolic process. Although it has been suggested that these carboxysome shell protein homologs form hexamers and further assemble into the flat facets of the polyhedral bacterial organelles shell at present no experimental evidence exists to directly support this view. Proteins in this CD contain two tandem BMC domains. This CD includes repeat 1 (the first BMC domain of BMC like 1 proteins).
Probab=33.00 E-value=86 Score=22.21 Aligned_cols=38 Identities=13% Similarity=0.213 Sum_probs=31.2
Q ss_pred CCCCeeeEEecCCCcHHHHHHHHHHhcCCCCCceEEEe
Q psy7980 17 PNQQRTSVHIRKGQTLLEALSKAMKLRNLKPEMCTAYD 54 (93)
Q Consensus 17 Pn~QrT~V~vrpG~tlrdaL~Kalk~R~L~~~~C~Vy~ 54 (93)
|..-.--|+|.||+-+....+-|||.-+..|-.-.|=|
T Consensus 30 ~Gda~l~iEvsPG~~I~r~tDiALKa~~Vrpg~~vVER 67 (111)
T cd07051 30 AGDASLWIEVAPGLAIHRVTDIALKAANVRPGVQVVER 67 (111)
T ss_pred CCCeEEEEEeccchhHHHHHHHHHHhccccccceeehh
Confidence 45555679999999999999999999988877666655
No 95
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=32.81 E-value=1.1e+02 Score=17.90 Aligned_cols=43 Identities=14% Similarity=0.194 Sum_probs=35.3
Q ss_pred EEEEcCCCCeeeEEecCCCcHHHHHHHHHHhcCCCCC-ceEEEe
Q psy7980 12 LRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKPE-MCTAYD 54 (93)
Q Consensus 12 irv~LPn~QrT~V~vrpG~tlrdaL~Kalk~R~L~~~-~C~Vy~ 54 (93)
|.|-.++++...+++.+..|+.+--.+..+.-|++++ +-.+|.
T Consensus 3 i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~ 46 (72)
T cd01809 3 IKVKTLDSQTHTFTVEEEITVLDLKEKIAEEVGIPVEQQRLIYS 46 (72)
T ss_pred EEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEEC
Confidence 5566688888889999999999999988888899877 555564
No 96
>PRK10353 3-methyl-adenine DNA glycosylase I; Provisional
Probab=32.46 E-value=36 Score=25.70 Aligned_cols=16 Identities=50% Similarity=0.582 Sum_probs=14.0
Q ss_pred cHHHHHHHHHHhcCCC
Q psy7980 31 TLLEALSKAMKLRNLK 46 (93)
Q Consensus 31 tlrdaL~Kalk~R~L~ 46 (93)
.+-++|+|.||+||+.
T Consensus 140 ~~S~~lskdLKkrGFk 155 (187)
T PRK10353 140 PASDALSKALKKRGFK 155 (187)
T ss_pred HHHHHHHHHHHHcCCc
Confidence 3689999999999984
No 97
>PRK05752 uroporphyrinogen-III synthase; Validated
Probab=32.15 E-value=65 Score=23.95 Aligned_cols=32 Identities=19% Similarity=0.251 Sum_probs=27.9
Q ss_pred eEEecCCCcHHHHHHHHHHhcCCCCCceEEEe
Q psy7980 23 SVHIRKGQTLLEALSKAMKLRNLKPEMCTAYD 54 (93)
Q Consensus 23 ~V~vrpG~tlrdaL~Kalk~R~L~~~~C~Vy~ 54 (93)
.|-+--|..-|+-|.+.|+.+|...+.+.||+
T Consensus 132 ~vLi~rg~~~r~~L~~~L~~~G~~v~~~~vY~ 163 (255)
T PRK05752 132 RVLIMRGEGGRELLAERLREQGASVDYLELYR 163 (255)
T ss_pred EEEEEccCccHHHHHHHHHHCCCEEeEEEEEe
Confidence 35555677889999999999999999999998
No 98
>TIGR01941 nqrF NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit. This model represents the NqrF subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=31.38 E-value=62 Score=25.96 Aligned_cols=44 Identities=14% Similarity=0.185 Sum_probs=31.1
Q ss_pred eEEEEcCCCCeeeEEecCCCcHHHHHHHHHHh-----cC-CCCCceEEEe
Q psy7980 11 LLRAQLPNQQRTSVHIRKGQTLLEALSKAMKL-----RN-LKPEMCTAYD 54 (93)
Q Consensus 11 ~irv~LPn~QrT~V~vrpG~tlrdaL~Kalk~-----R~-L~~~~C~Vy~ 54 (93)
.+++.++++....+++.+|.||-||+..+=-. +| -.+..|.|..
T Consensus 31 ~v~v~~~~~~~~~~~~~~g~tlL~a~~~~gi~i~~~C~g~G~Cg~C~v~v 80 (405)
T TIGR01941 31 DITIGINDDEEKSITVPAGGKLLNTLASNGIFISSACGGGGTCGQCRVRV 80 (405)
T ss_pred cEEEEEcCCCceEEEECCCChHHHHHHHcCCCCcccCCCccEeCCCEEEE
Confidence 48899988888889999999999997643100 11 2455677776
No 99
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=31.00 E-value=1.3e+02 Score=18.55 Aligned_cols=38 Identities=13% Similarity=0.110 Sum_probs=31.1
Q ss_pred EEEEcCCCCeeeEEecCCCcHHHHHHHHHHhcCCCCCc
Q psy7980 12 LRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKPEM 49 (93)
Q Consensus 12 irv~LPn~QrT~V~vrpG~tlrdaL~Kalk~R~L~~~~ 49 (93)
|-|-.++|+...+++.+..|+.|-=.++-+.-|+.++.
T Consensus 5 i~Vk~~~G~~~~~~v~~~~TV~~lK~~I~~~~~i~~~~ 42 (80)
T cd01792 5 LKVKMLGGNEFLVSLRDSMTVSELKQQIAQKIGVPAFQ 42 (80)
T ss_pred EEEEeCCCCEEEEEcCCCCcHHHHHHHHHHHhCCCHHH
Confidence 55667888888899999999998887777777887773
No 100
>PRK07569 bidirectional hydrogenase complex protein HoxU; Validated
Probab=30.26 E-value=61 Score=24.28 Aligned_cols=25 Identities=40% Similarity=0.510 Sum_probs=19.1
Q ss_pred EEEEcCCCCeeeEEecCCCcHHHHHHHH
Q psy7980 12 LRAQLPNQQRTSVHIRKGQTLLEALSKA 39 (93)
Q Consensus 12 irv~LPn~QrT~V~vrpG~tlrdaL~Ka 39 (93)
+.+.+ ||+. +++.+|.||-+|+.++
T Consensus 4 v~i~i-dg~~--~~~~~g~til~a~~~~ 28 (234)
T PRK07569 4 KTLTI-DDQL--VSAREGETLLEAAREA 28 (234)
T ss_pred EEEEE-CCEE--EEeCCCCHHHHHHHHc
Confidence 55555 6655 9999999999997653
No 101
>KOG2378|consensus
Probab=29.90 E-value=1.7e+02 Score=25.90 Aligned_cols=70 Identities=19% Similarity=0.176 Sum_probs=51.2
Q ss_pred CceEEEEcCCCCeeeEEecCCCcHHHHHHHHHHhcCCCCCceEEEe--CCCCcccccCCC--CCCcC-CceeEEE
Q psy7980 9 GILLRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKPEMCTAYD--SNTGVSLQWDTD--SDHLP-TTEIRVE 78 (93)
Q Consensus 9 ~~~irv~LPn~QrT~V~vrpG~tlrdaL~Kalk~R~L~~~~C~Vy~--~~~~~~i~wdtD--~~~L~-~eEl~Ve 78 (93)
+.+++||+|+-...++.+|-.-+++|.++..-++-|.+-+.-.|-. +|.+..+.=|.+ .++|. ...|.|=
T Consensus 235 ev~~~vy~~Dhsy~tl~~~vs~svqEI~~~va~k~~~seel~LV~v~s~GEkv~lqPnd~~v~tsL~ln~rLfv~ 309 (573)
T KOG2378|consen 235 EVFCIVYLPDHSYVTLRIRVSASVQEILEAVAEKLGYSEELILVKVSSSGEKVILQPNDRAVFTSLGLNSRLFVV 309 (573)
T ss_pred eeeEEEEecCceEEEEEeechhHHHHHHHHHHHHhccccceeEEEEccCCceeeecCCcceeeeeecccceEEEE
Confidence 5589999999999999999999999999998899898888666655 345444444444 23343 4455553
No 102
>cd06537 CIDE_N_B CIDE_N domain of CIDE-B proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45 and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=29.89 E-value=1.7e+02 Score=19.50 Aligned_cols=35 Identities=26% Similarity=0.138 Sum_probs=23.3
Q ss_pred CeeeEEecCCCcHHHHHHHHHHhcCCCCCceEEEeC
Q psy7980 20 QRTSVHIRKGQTLLEALSKAMKLRNLKPEMCTAYDS 55 (93)
Q Consensus 20 QrT~V~vrpG~tlrdaL~Kalk~R~L~~~~C~Vy~~ 55 (93)
.|+.=.-.-+-+|.|-+.|+++.-++. ..+.+...
T Consensus 11 ~r~~kkGV~A~sL~EL~~K~~~~L~~~-~~~~lvLe 45 (81)
T cd06537 11 KRTVRKGLTAASLQELLAKALETLLLS-GVLTLVLE 45 (81)
T ss_pred CCCeeEeEEccCHHHHHHHHHHHhCCC-CceEEEEe
Confidence 344333334568999999999998884 33555553
No 103
>cd06536 CIDE_N_ICAD CIDE_N domain of ICAD. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD (DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40 and ICAD/DFF45 during apoptosis. In normal cells, DFF exists in the nucleus as a heterodimer composed of CAD/DFF40 as a latent nuclease and its chaperone and inhibitor subunit ICAD/DFF45. Apoptotic activation of caspase-3 results in the cleavage of DFF45/ICAD and release of active DFF40/CAD nuclease.
Probab=29.52 E-value=1.5e+02 Score=19.64 Aligned_cols=46 Identities=17% Similarity=0.063 Sum_probs=30.3
Q ss_pred CCCcHHHHHHHHHHhcCCCCC--ceEEEeCCCCcccccCCCCCCcCCc
Q psy7980 28 KGQTLLEALSKAMKLRNLKPE--MCTAYDSNTGVSLQWDTDSDHLPTT 73 (93)
Q Consensus 28 pG~tlrdaL~Kalk~R~L~~~--~C~Vy~~~~~~~i~wdtD~~~L~~e 73 (93)
-+-+|.|-+.|++++=++..+ .|.+|...++..++=+.=-..|+.+
T Consensus 19 ~A~sL~eL~~K~~~~l~l~~~~~~~~lvL~eDGT~VddEeyF~tLp~n 66 (80)
T cd06536 19 AASSLEELRIKACESLGFDSSSAPITLVLAEDGTIVEDEDYFLCLPPN 66 (80)
T ss_pred EcCCHHHHHHHHHHHhCCCCCCCceEEEEecCCcEEccHHHHhhCCCC
Confidence 456899999999999999854 5888885444444333323334333
No 104
>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B. Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.
Probab=29.48 E-value=1.5e+02 Score=18.75 Aligned_cols=57 Identities=19% Similarity=0.180 Sum_probs=39.3
Q ss_pred eeEEecCCCcHHHHHHHHHHhcCCCCC-ceEE-EeCCCCcccccCCCCCCcC------CceeEEE
Q psy7980 22 TSVHIRKGQTLLEALSKAMKLRNLKPE-MCTA-YDSNTGVSLQWDTDSDHLP------TTEIRVE 78 (93)
Q Consensus 22 T~V~vrpG~tlrdaL~Kalk~R~L~~~-~C~V-y~~~~~~~i~wdtD~~~L~------~eEl~Ve 78 (93)
..-.+-+++|+.+-=.|.-+.-|+.|+ |=.+ |.+........+.|-..|. |-+|+|.
T Consensus 15 ~ekr~~~~~Tv~~lK~kl~~~~G~~~~~mrL~l~~~~~~~~~~l~~d~~~L~~y~~~dg~~IhVv 79 (84)
T cd01789 15 FEKKYSRGLTIAELKKKLELVVGTPASSMRLQLFDGDDKLVSKLDDDDALLGSYPVDDGCRIHVI 79 (84)
T ss_pred eeEecCCCCcHHHHHHHHHHHHCCCccceEEEEEcCCCCeEeecCCCccEeeeccCCCCCEEEEE
Confidence 344588999999888888888899888 4443 4444444445777777774 6666654
No 105
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=28.88 E-value=1.3e+02 Score=17.57 Aligned_cols=40 Identities=10% Similarity=0.110 Sum_probs=34.4
Q ss_pred CCCCeeeEEecCCCcHHHHHHHHHHhcCCCCCceEEEeCC
Q psy7980 17 PNQQRTSVHIRKGQTLLEALSKAMKLRNLKPEMCTAYDSN 56 (93)
Q Consensus 17 Pn~QrT~V~vrpG~tlrdaL~Kalk~R~L~~~~C~Vy~~~ 56 (93)
++|+...++|.+..|+.+-=.+..+.-|++++....+..|
T Consensus 3 ~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~~~L~~~G 42 (69)
T PF00240_consen 3 LSGKTFTLEVDPDDTVADLKQKIAEETGIPPEQQRLIYNG 42 (69)
T ss_dssp TTSEEEEEEEETTSBHHHHHHHHHHHHTSTGGGEEEEETT
T ss_pred CCCcEEEEEECCCCCHHHhhhhcccccccccccceeeeee
Confidence 5788899999999999999888889999999977776643
No 106
>cd01616 TGS The TGS domain, named after the ThrRS, GTPase, and SpoT/RelA proteins where it occurs, is structurally similar to ubiquitin. TGS is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information on the function of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=28.17 E-value=1e+02 Score=16.34 Aligned_cols=25 Identities=24% Similarity=0.294 Sum_probs=18.0
Q ss_pred EEEcCCCCeeeEEecCCCcHHHHHHHH
Q psy7980 13 RAQLPNQQRTSVHIRKGQTLLEALSKA 39 (93)
Q Consensus 13 rv~LPn~QrT~V~vrpG~tlrdaL~Ka 39 (93)
.+++||++ ..++..|.|+.|.+.+.
T Consensus 2 ~~~~~~~~--~~~~~~g~t~~~~~~~~ 26 (60)
T cd01616 2 IIFTPDGS--AVELPKGATAMDFALKI 26 (60)
T ss_pred EEECCCCC--EEEcCCCCCHHHHHHHH
Confidence 46788874 45567899999966544
No 107
>PRK14659 acpS 4'-phosphopantetheinyl transferase; Provisional
Probab=28.05 E-value=81 Score=21.37 Aligned_cols=38 Identities=18% Similarity=0.183 Sum_probs=27.1
Q ss_pred CcHHHHHHHHHHh---cCCCCCceEEEeC-CCCcccccCCCC
Q psy7980 30 QTLLEALSKAMKL---RNLKPEMCTAYDS-NTGVSLQWDTDS 67 (93)
Q Consensus 30 ~tlrdaL~Kalk~---R~L~~~~C~Vy~~-~~~~~i~wdtD~ 67 (93)
-+.++|..||+-. .++...++.++.. +.+..+..+..+
T Consensus 56 waaKEA~~KAlg~g~~~~~~~~di~i~~~~~g~P~v~l~~~~ 97 (122)
T PRK14659 56 FAAKEAYVKALGTGFGRGIKMKDISVYNDLYGKPQITVSKSN 97 (122)
T ss_pred HHHHHHHHHHhccCcCcCccccEEEEEECCCCCeEEEECCcc
Confidence 3689999999986 5677788888885 444455555443
No 108
>PRK00070 acpS 4'-phosphopantetheinyl transferase; Provisional
Probab=27.30 E-value=67 Score=21.23 Aligned_cols=26 Identities=19% Similarity=0.144 Sum_probs=19.5
Q ss_pred CcHHHHHHHHHHh---cCCCCCceEEEeC
Q psy7980 30 QTLLEALSKAMKL---RNLKPEMCTAYDS 55 (93)
Q Consensus 30 ~tlrdaL~Kalk~---R~L~~~~C~Vy~~ 55 (93)
-++++|+.|++-. +++.+..+.+...
T Consensus 53 ~aaKEA~~Kalg~~~~~~~~~~~i~i~~~ 81 (126)
T PRK00070 53 FAAKEAFSKALGTGIGKGVSFRDIEVLND 81 (126)
T ss_pred HHHHHHHHHHhccCcccceeeeEEEEEEC
Confidence 4689999999964 3456778888875
No 109
>TIGR03193 4hydroxCoAred 4-hydroxybenzoyl-CoA reductase, gamma subunit. 4-hydroxybenzoyl-CoA reductase converts 4-hydroxybenzoyl-CoA to benzoyl-CoA, a common intermediate in the degradation of aromatic compounds. This protein family represents the gamma chain of this three-subunit enzyme.
Probab=26.87 E-value=82 Score=22.94 Aligned_cols=63 Identities=17% Similarity=0.206 Sum_probs=39.9
Q ss_pred CCCeeeEEecCCCcHHHHHHHHHHhcCCC-------CCceEEEeCCCCcccccCCCCCCcCCcee-EEEeec
Q psy7980 18 NQQRTSVHIRKGQTLLEALSKAMKLRNLK-------PEMCTAYDSNTGVSLQWDTDSDHLPTTEI-RVEVME 81 (93)
Q Consensus 18 n~QrT~V~vrpG~tlrdaL~Kalk~R~L~-------~~~C~Vy~~~~~~~i~wdtD~~~L~~eEl-~Ve~ld 81 (93)
|++...+++.|+++|-|.|-..+..-|.. .-.|.|...+. ..-+=-+-+..++|.+| .||-+.
T Consensus 7 NG~~~~~~~~~~~~Ll~~LR~~lgltg~K~gC~~G~CGACtVlvdg~-~v~SCl~~~~~~~G~~V~TiEgl~ 77 (148)
T TIGR03193 7 NGRWREDAVADNMLLVDYLRDTVGLTGTKQGCDGGECGACTVLVDGR-PRLACSTLAHRVAGRKVETVEGLA 77 (148)
T ss_pred CCEEEEeecCCCCcHHHHHHHhcCCCCCCCCCCCCCCCCCEEEECCe-EeeccHhhHhhcCCCcEEEeCCCC
Confidence 77788899999999999999877555542 33688888542 11122222333456665 466554
No 110
>PRK00801 hypothetical protein; Provisional
Probab=26.72 E-value=1.1e+02 Score=23.14 Aligned_cols=36 Identities=28% Similarity=0.277 Sum_probs=27.3
Q ss_pred EEcCCCCeeeEEecCCCcHHHHHHHHHHhcCCCCCc----eEEEe
Q psy7980 14 AQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKPEM----CTAYD 54 (93)
Q Consensus 14 v~LPn~QrT~V~vrpG~tlrdaL~Kalk~R~L~~~~----C~Vy~ 54 (93)
+|||. |-+..|..-.+-|+.++.|.||.+++ ..+|+
T Consensus 139 ~~LPq-----V~~e~~wd~~efl~~l~~KAGl~~d~w~~~~~v~r 178 (201)
T PRK00801 139 LLLPQ-----VAPEWGFDSEEFLSHTCLKAGLPPDCWLDDAEVYR 178 (201)
T ss_pred EECCc-----chhhcCCCHHHHHHHHHHhcCCCccccccCcEEEE
Confidence 56665 45556777789999999999998774 45666
No 111
>PRK05863 sulfur carrier protein ThiS; Provisional
Probab=26.54 E-value=1.5e+02 Score=17.82 Aligned_cols=44 Identities=11% Similarity=0.114 Sum_probs=29.9
Q ss_pred EecCCCcHHHHHHHHHHhcCCCCCceEEEeCCC-CcccccCCCCCCcC-Ccee
Q psy7980 25 HIRKGQTLLEALSKAMKLRNLKPEMCTAYDSNT-GVSLQWDTDSDHLP-TTEI 75 (93)
Q Consensus 25 ~vrpG~tlrdaL~Kalk~R~L~~~~C~Vy~~~~-~~~i~wdtD~~~L~-~eEl 75 (93)
++.+|.|+.|.|.. -++.++.++|-..+. =..-+|++ . |. |..|
T Consensus 11 ~~~~~~tl~~ll~~----l~~~~~~vav~~N~~iv~r~~~~~--~-L~~gD~i 56 (65)
T PRK05863 11 EVDEQTTVAALLDS----LGFPEKGIAVAVDWSVLPRSDWAT--K-LRDGARL 56 (65)
T ss_pred EcCCCCcHHHHHHH----cCCCCCcEEEEECCcCcChhHhhh--h-cCCCCEE
Confidence 44578998887764 588999999988422 23568885 3 63 5554
No 112
>PRK14663 acpS 4'-phosphopantetheinyl transferase; Provisional
Probab=25.86 E-value=1.5e+02 Score=19.95 Aligned_cols=34 Identities=12% Similarity=0.010 Sum_probs=23.2
Q ss_pred cHHHHHHHHHHh---cCCCCCceEEEeC-CCCcccccC
Q psy7980 31 TLLEALSKAMKL---RNLKPEMCTAYDS-NTGVSLQWD 64 (93)
Q Consensus 31 tlrdaL~Kalk~---R~L~~~~C~Vy~~-~~~~~i~wd 64 (93)
..++|+.||+.. .++...+..|+.. ..+..+...
T Consensus 48 AaKEA~~KAlg~g~~~~i~~~dieI~~~~~G~P~i~l~ 85 (116)
T PRK14663 48 AAKEAVVKALGTGFSQGVHWKSFAILNDAAGRPFVKVI 85 (116)
T ss_pred HHHHHHHHHHccCCCCCceeeEEEEEECCCCCcEEEEc
Confidence 578999999963 4567788888884 333344433
No 113
>COG4379 Mu-like prophage tail protein gpP [General function prediction only]
Probab=25.65 E-value=79 Score=26.66 Aligned_cols=35 Identities=20% Similarity=0.278 Sum_probs=28.9
Q ss_pred eeeEEecCCCcHHHHHHHHHHhcCC----CCCceEEEeC
Q psy7980 21 RTSVHIRKGQTLLEALSKAMKLRNL----KPEMCTAYDS 55 (93)
Q Consensus 21 rT~V~vrpG~tlrdaL~Kalk~R~L----~~~~C~Vy~~ 55 (93)
..++++-||.|.-|||.++-+.+|| .|+--.|+.+
T Consensus 142 ~~~~~iEpGETa~daL~~iAr~~gll~~~e~DG~Lv~t~ 180 (386)
T COG4379 142 LPKFTIEPGETAWDALTHIARHVGLLPWLEPDGTLVVTG 180 (386)
T ss_pred CceeEcCCcchHHHHHHHHHhhcceeEEecCCceEEEec
Confidence 3578899999999999999999997 5665666664
No 114
>PRK08811 uroporphyrinogen-III synthase; Validated
Probab=25.41 E-value=87 Score=23.96 Aligned_cols=27 Identities=11% Similarity=0.092 Sum_probs=24.1
Q ss_pred CCCcHHHHHHHHHHhcCCCCCceEEEe
Q psy7980 28 KGQTLLEALSKAMKLRNLKPEMCTAYD 54 (93)
Q Consensus 28 pG~tlrdaL~Kalk~R~L~~~~C~Vy~ 54 (93)
-|..-|+-|.+.|+.||...+.+.||+
T Consensus 145 rg~~gr~~L~~~L~~~G~~V~~~~vY~ 171 (266)
T PRK08811 145 TAPGGRGLLAPTLQQRGARILRADVYQ 171 (266)
T ss_pred eCCCcHHHHHHHHHHCCCEEeEEEEEe
Confidence 344568999999999999999999998
No 115
>COG1993 PII-like signaling protein [Signal transduction mechanisms]
Probab=25.31 E-value=97 Score=21.84 Aligned_cols=39 Identities=23% Similarity=0.410 Sum_probs=31.2
Q ss_pred CceEEEEcCCCCeeeEEecCCCcHHHHHHHHHHhcCCCCCceEEEe
Q psy7980 9 GILLRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKPEMCTAYD 54 (93)
Q Consensus 9 ~~~irv~LPn~QrT~V~vrpG~tlrdaL~Kalk~R~L~~~~C~Vy~ 54 (93)
..++|+|+-.+-.+ .|..++++|.+.++..|+.= -.||+
T Consensus 6 ~~lLrIy~~E~d~~-----eGkp~~~~iverlre~Gi~G--ATVlR 44 (109)
T COG1993 6 SKLLRIYLGENDKH-----EGKPLYEAIVERLREEGIRG--ATVLR 44 (109)
T ss_pred ceeeEEEEcccccc-----CCeEHHHHHHHHHHHcCcCc--eeeee
Confidence 34799999888554 39999999999999977754 46888
No 116
>cd01770 p47_UBX p47-like ubiquitin domain. p47_UBX p47 is an adaptor molecule of the cytosolic AAA ATPase p97. The principal role of the p97-p47 complex is to regulate membrane fusion events. Mono-ubiquitin recognition by p47 is crucial for p97-p47-mediated Golgi membrane fusion events. p47 has carboxy-terminal SEP and UBX domains. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=25.17 E-value=1.3e+02 Score=19.12 Aligned_cols=33 Identities=9% Similarity=0.172 Sum_probs=25.5
Q ss_pred eEEEEcCCCCeeeEEecCCCcHHHHHHHHHHhc
Q psy7980 11 LLRAQLPNQQRTSVHIRKGQTLLEALSKAMKLR 43 (93)
Q Consensus 11 ~irv~LPn~QrT~V~vrpG~tlrdaL~Kalk~R 43 (93)
.|.+=||||+|-+-.+..--||.|.-.=.-..+
T Consensus 6 ~iqiRlpdG~r~~~rF~~~~tv~~l~~~v~~~~ 38 (79)
T cd01770 6 SIQIRLADGKRLVQKFNSSHRVSDVRDFIVNAR 38 (79)
T ss_pred EEEEECCCCCEEEEEeCCCCcHHHHHHHHHHhC
Confidence 578889999999999999999876554444334
No 117
>PRK11433 aldehyde oxidoreductase 2Fe-2S subunit; Provisional
Probab=25.07 E-value=87 Score=24.24 Aligned_cols=68 Identities=19% Similarity=0.206 Sum_probs=41.6
Q ss_pred EEEEcCCCCeeeEEecCCCcHHHHHHHHHHhcCC-------CCCceEEEeCCCCcccccCCCCCCcCCcee-EEEeec
Q psy7980 12 LRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNL-------KPEMCTAYDSNTGVSLQWDTDSDHLPTTEI-RVEVME 81 (93)
Q Consensus 12 irv~LPn~QrT~V~vrpG~tlrdaL~Kalk~R~L-------~~~~C~Vy~~~~~~~i~wdtD~~~L~~eEl-~Ve~ld 81 (93)
|++++ |++...+++.||.+|-|+|...+..-|- ..-.|.|-..+.. .-+=-+-+...+|.+| .+|-+.
T Consensus 52 i~~~V-NG~~~~~~v~~~~tLLd~LR~~l~ltGtK~GC~~G~CGACTVlVdG~~-v~SCl~la~~~~G~~ItTiEGL~ 127 (217)
T PRK11433 52 VTLKV-NGKTEQLEVDTRTTLLDALREHLHLTGTKKGCDHGQCGACTVLVNGRR-LNACLTLAVMHQGAEITTIEGLG 127 (217)
T ss_pred EEEEE-CCEEEEEecCCCCcHHHHHHHhcCCCCCCCCCCCCCcCceEEEECCEE-eeeeeeehhhcCCCEEEEeCCcC
Confidence 55554 7877778999999999999987765443 3446788664321 1111122233457766 366554
No 118
>cd00754 MoaD Ubiquitin domain of MoaD-like proteins. MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.
Probab=24.91 E-value=1.6e+02 Score=17.54 Aligned_cols=51 Identities=16% Similarity=0.063 Sum_probs=32.9
Q ss_pred eeeEEecCCCcHHHHHHHHHHhcC----CCCCceEEEeCCCCcccccCCCCCCc-CCceeE
Q psy7980 21 RTSVHIRKGQTLLEALSKAMKLRN----LKPEMCTAYDSNTGVSLQWDTDSDHL-PTTEIR 76 (93)
Q Consensus 21 rT~V~vrpG~tlrdaL~Kalk~R~----L~~~~C~Vy~~~~~~~i~wdtD~~~L-~~eEl~ 76 (93)
...+++-.|.|++|.+....+..+ ...+.+.|+..+.. +++|+ .| +|+||.
T Consensus 17 ~~~~~~~~~~tv~~ll~~l~~~~~~~~~~~~~~~~v~vNg~~--v~~~~---~l~~gD~v~ 72 (80)
T cd00754 17 EEELELPEGATVGELLDALEARYPGLLEELLARVRIAVNGEY--VRLDT---PLKDGDEVA 72 (80)
T ss_pred eEEEECCCCCcHHHHHHHHHHHCchHHHhhhhcEEEEECCeE--cCCCc---ccCCCCEEE
Confidence 356777779999999988766542 24467888885443 33432 34 466664
No 119
>PF13834 DUF4193: Domain of unknown function (DUF4193)
Probab=24.83 E-value=55 Score=22.70 Aligned_cols=23 Identities=17% Similarity=0.130 Sum_probs=15.2
Q ss_pred CCCCCcCCceeEEEeecccccccccc
Q psy7980 65 TDSDHLPTTEIRVEVMEGNLALSSLL 90 (93)
Q Consensus 65 tD~~~L~~eEl~Ve~ld~~p~~~h~f 90 (93)
..-..|.||||.|.+ +|...-.|
T Consensus 49 LPgaDls~EEL~V~V---iP~q~DEF 71 (99)
T PF13834_consen 49 LPGADLSGEELSVRV---IPKQADEF 71 (99)
T ss_pred CCCccccCCeEEEEE---ecCCCCce
Confidence 334456799999999 56544433
No 120
>KOG4132|consensus
Probab=24.77 E-value=66 Score=25.80 Aligned_cols=27 Identities=19% Similarity=0.463 Sum_probs=25.1
Q ss_pred CCCcHHHHHHHHHHhcCCCCCceEEEe
Q psy7980 28 KGQTLLEALSKAMKLRNLKPEMCTAYD 54 (93)
Q Consensus 28 pG~tlrdaL~Kalk~R~L~~~~C~Vy~ 54 (93)
-|---||-|-|+|.-.|+..+-|.||-
T Consensus 140 cGn~~rdil~kkL~~~G~~Vds~~VY~ 166 (260)
T KOG4132|consen 140 CGNLRRDILPKKLHDKGIRVDSCEVYE 166 (260)
T ss_pred cccchhHHHHHHHHhCCceeeEEEEEe
Confidence 467789999999999999999999998
No 121
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein. ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.
Probab=24.29 E-value=1.4e+02 Score=17.81 Aligned_cols=47 Identities=21% Similarity=0.285 Sum_probs=28.3
Q ss_pred EEecCCCcHHHHHHHHHHhcCCCCCceEEEeCCCC-cccccCCCCCCc-CCceeE
Q psy7980 24 VHIRKGQTLLEALSKAMKLRNLKPEMCTAYDSNTG-VSLQWDTDSDHL-PTTEIR 76 (93)
Q Consensus 24 V~vrpG~tlrdaL~Kalk~R~L~~~~C~Vy~~~~~-~~i~wdtD~~~L-~~eEl~ 76 (93)
.++..|+|+.|.|.. -++.++.++|...+.- ..-+|++. .| +|.+|.
T Consensus 9 ~~~~~~~tv~~ll~~----l~~~~~~i~V~vNg~~v~~~~~~~~--~L~~gD~V~ 57 (65)
T cd00565 9 REVEEGATLAELLEE----LGLDPRGVAVALNGEIVPRSEWAST--PLQDGDRIE 57 (65)
T ss_pred EEcCCCCCHHHHHHH----cCCCCCcEEEEECCEEcCHHHcCce--ecCCCCEEE
Confidence 455679998877653 3688899998874321 22244443 23 355553
No 122
>PRK00285 ihfA integration host factor subunit alpha; Reviewed
Probab=24.14 E-value=35 Score=22.16 Aligned_cols=22 Identities=27% Similarity=0.306 Sum_probs=18.3
Q ss_pred CeeeEEecCCCcHHHHHHHHHH
Q psy7980 20 QRTSVHIRKGQTLLEALSKAMK 41 (93)
Q Consensus 20 QrT~V~vrpG~tlrdaL~Kalk 41 (93)
.+.+|.+|||..|++++..+-.
T Consensus 75 ~~~~v~Fkpsk~lk~~~~~~~~ 96 (99)
T PRK00285 75 ARRVVTFRPSQKLKSRVENAAP 96 (99)
T ss_pred CcccEEEeeCHHHHHHHhccCc
Confidence 5677999999999999886544
No 123
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=23.91 E-value=1.8e+02 Score=17.60 Aligned_cols=42 Identities=5% Similarity=0.138 Sum_probs=34.8
Q ss_pred EEcCCCCeeeEEecCCCcHHHHHHHHHHhcCCCCC-ceEEEeC
Q psy7980 14 AQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKPE-MCTAYDS 55 (93)
Q Consensus 14 v~LPn~QrT~V~vrpG~tlrdaL~Kalk~R~L~~~-~C~Vy~~ 55 (93)
|=.|+++...+++.+..|+.+-=.++-+.-|+.++ ....|.+
T Consensus 3 vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G 45 (74)
T cd01810 3 VRNDKGRSSIYEVQLTQTVATLKQQVSQRERVQADQFWLSFEG 45 (74)
T ss_pred EECCCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEECC
Confidence 44688888899999999999999999899999877 6666653
No 124
>PF03352 Adenine_glyco: Methyladenine glycosylase; InterPro: IPR005019 This family of methyladenine glycosylases includes DNA-3-methyladenine glycosylase I (3.2.2.20 from EC) which acts as a base excision repair enzyme by severing the glycosylic bond of numerous damaged bases. The enzyme is constitutively expressed and is specific for the alkylated 3-methyladenine DNA.; GO: 0008725 DNA-3-methyladenine glycosylase I activity, 0006284 base-excision repair; PDB: 2OFI_A 2OFK_A 2JG6_A 4AIA_E 4AI5_C 4AI4_A 1LMZ_A 1P7M_A 1NKU_A.
Probab=23.81 E-value=60 Score=24.25 Aligned_cols=18 Identities=44% Similarity=0.565 Sum_probs=13.3
Q ss_pred CCcHHHHHHHHHHhcCCC
Q psy7980 29 GQTLLEALSKAMKLRNLK 46 (93)
Q Consensus 29 G~tlrdaL~Kalk~R~L~ 46 (93)
...+-++++|.||+||+.
T Consensus 133 ~t~~s~~isk~lkk~GF~ 150 (179)
T PF03352_consen 133 STPLSEAISKDLKKRGFK 150 (179)
T ss_dssp --HHHHHHHHHHHHTT--
T ss_pred ccHHHHHHHHHHHhCcce
Confidence 357889999999999984
No 125
>TIGR00568 alkb DNA alkylation damage repair protein AlkB. Proteins in this family have an as of yet undetermined function in the repair of alkylation damage to DNA. Alignment and family designation based on phylogenomic analysis of Jonathan A. Eisen (PhD Thesis, Stanford University, 1999).
Probab=23.55 E-value=2e+02 Score=20.97 Aligned_cols=40 Identities=23% Similarity=0.424 Sum_probs=25.4
Q ss_pred HHHHHHHHHHhcCCCCCceEEEeCCCCcccccCCCCCCcC
Q psy7980 32 LLEALSKAMKLRNLKPEMCTAYDSNTGVSLQWDTDSDHLP 71 (93)
Q Consensus 32 lrdaL~Kalk~R~L~~~~C~Vy~~~~~~~i~wdtD~~~L~ 71 (93)
|++.+++++..-+..++.|.|..=..+..|.|-.|-..+.
T Consensus 79 L~~~v~~~~g~~~~~~n~~LvN~Y~~Gd~mg~H~D~~e~~ 118 (169)
T TIGR00568 79 LCERVATAAGFPDFQPDACLVNRYAPGATLSLHQDRDEPD 118 (169)
T ss_pred HHHHHHHHhCCCCCCCCEEEEEeecCCCcccccccccccc
Confidence 4444444443333489999998733336799999965654
No 126
>TIGR02653 Lon_rel_chp conserved hypothetical protein. This model describes a protein family of unknown function, about 690 residues in length, in which some members show C-terminal sequence similarity to Pfam model pfam05362, which is the Lon protease C-terminal proteolytic domain, from MEROPS family S16. However, the annotated catalytic sites of E. coli Lon protease are not conserved in members of this family. Members have a motif GP[RK][GS]TGKS, similar to the ATP-binding P-loop motif GxxGxGK[ST].
Probab=23.53 E-value=69 Score=28.81 Aligned_cols=43 Identities=16% Similarity=0.119 Sum_probs=38.2
Q ss_pred CceEEEEcCCCCeeeEEecCCCcHHHHHHHHHHhcCCCCCceE
Q psy7980 9 GILLRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKPEMCT 51 (93)
Q Consensus 9 ~~~irv~LPn~QrT~V~vrpG~tlrdaL~Kalk~R~L~~~~C~ 51 (93)
+-=+.+|+|+++-.......|+|+-=||.+++..|.+.++.+.
T Consensus 562 ~~DiHIHvpega~pkdGpSAGia~~~AL~Sal~~rpVr~~lAm 604 (675)
T TIGR02653 562 EHDYHLHVVDLHNTGPSTEASLAALIALCSALLKRPVQEQMVI 604 (675)
T ss_pred cceEEEECCCCCCCCCCchhHHHHHHHHHHHHhCCCCCCCeEE
Confidence 4458999999999888888999999999999999999988654
No 127
>TIGR01683 thiS thiamine biosynthesis protein ThiS. This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.
Probab=23.17 E-value=1.5e+02 Score=17.63 Aligned_cols=47 Identities=23% Similarity=0.314 Sum_probs=29.0
Q ss_pred eEEecCCCcHHHHHHHHHHhcCCCCCceEEEeCCCC-cccccCCCCCCc-CCcee
Q psy7980 23 SVHIRKGQTLLEALSKAMKLRNLKPEMCTAYDSNTG-VSLQWDTDSDHL-PTTEI 75 (93)
Q Consensus 23 ~V~vrpG~tlrdaL~Kalk~R~L~~~~C~Vy~~~~~-~~i~wdtD~~~L-~~eEl 75 (93)
..++..|+|+.|.|.+ -++.++.++|...+.- ..-.|++- .| +|.+|
T Consensus 7 ~~~~~~~~tv~~ll~~----l~~~~~~v~v~vN~~iv~~~~~~~~--~L~~gD~v 55 (64)
T TIGR01683 7 PVEVEDGLTLAALLES----LGLDPRRVAVAVNGEIVPRSEWDDT--ILKEGDRI 55 (64)
T ss_pred EEEcCCCCcHHHHHHH----cCCCCCeEEEEECCEEcCHHHcCce--ecCCCCEE
Confidence 3456789998887763 4677889988874322 12236653 34 35554
No 128
>PF05924 SAMP: SAMP Motif; InterPro: IPR009224 This short region is found repeated in the mid region of the adenomatous polyposis proteins (APCs). This motif binds axin [].; GO: 0008013 beta-catenin binding, 0016055 Wnt receptor signaling pathway; PDB: 1EMU_B 2RQU_B.
Probab=22.86 E-value=25 Score=18.00 Aligned_cols=13 Identities=38% Similarity=0.460 Sum_probs=8.2
Q ss_pred cHHHHHHHHHHhc
Q psy7980 31 TLLEALSKAMKLR 43 (93)
Q Consensus 31 tlrdaL~Kalk~R 43 (93)
-|++|+..||.+|
T Consensus 5 iL~~CI~sAmPk~ 17 (20)
T PF05924_consen 5 ILQECIGSAMPKR 17 (20)
T ss_dssp HHHHHHHCTS---
T ss_pred HHHHHHHHhcccc
Confidence 4788999888876
No 129
>PRK06259 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Provisional
Probab=22.80 E-value=1.9e+02 Score=23.70 Aligned_cols=64 Identities=19% Similarity=0.257 Sum_probs=40.1
Q ss_pred CCCCeeeEEecCCCcHHHHHHHHHHh--cCC---------CCCceEEEeCCCCcccccCCCCCCcCCceeEEEeeccccc
Q psy7980 17 PNQQRTSVHIRKGQTLLEALSKAMKL--RNL---------KPEMCTAYDSNTGVSLQWDTDSDHLPTTEIRVEVMEGNLA 85 (93)
Q Consensus 17 Pn~QrT~V~vrpG~tlrdaL~Kalk~--R~L---------~~~~C~Vy~~~~~~~i~wdtD~~~L~~eEl~Ve~ld~~p~ 85 (93)
|-=|...|++.+|+||-|||..+-.. -+| ....|.|-..|.. .+ -|.....+.+.||.+. +|.
T Consensus 18 ~~~~~~~v~~~~~~tvl~al~~~~~~~~~~l~~~~~C~~g~Cg~C~v~v~G~~-~l----aC~~~~~~~~~i~~~~-~~~ 91 (486)
T PRK06259 18 PHFESYEVPVKEGMTVLDALEYINKTYDANIAFRSSCRAGQCGSCAVTINGEP-VL----ACKTEVEDGMIIEPLD-FPV 91 (486)
T ss_pred ceeEEEEEeCCCCChHHHHHHHhchhcCCCceecCCCCCCCCCCCEEEECCeE-ec----ccccCCCCCCEEEecC-Ccc
Confidence 33456678888999999999976443 222 2223777764431 11 3555566668888887 664
Q ss_pred c
Q psy7980 86 L 86 (93)
Q Consensus 86 ~ 86 (93)
+
T Consensus 92 ~ 92 (486)
T PRK06259 92 I 92 (486)
T ss_pred h
Confidence 3
No 130
>cd06538 CIDE_N_FSP27 CIDE_N domain of FSP27 proteins. The CIDE-N (cell death-inducing DFF45-like effector, N-terminal) domain is found in the FSP27/CIDE-C protein, which has been identified as a n adipocyte lipid droplet protein that negatively regulates lipolysis and promotes triglyceride accumulation. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. The CIDE-N domain of FSP27 is sufficient to increase apoptosis in vitro when overexpressed.
Probab=22.73 E-value=2.3e+02 Score=18.76 Aligned_cols=34 Identities=15% Similarity=0.194 Sum_probs=24.0
Q ss_pred CCCcHHHHHHHHHHhcCCCCCceEEEeCCCCcccc
Q psy7980 28 KGQTLLEALSKAMKLRNLKPEMCTAYDSNTGVSLQ 62 (93)
Q Consensus 28 pG~tlrdaL~Kalk~R~L~~~~C~Vy~~~~~~~i~ 62 (93)
-+-+|.|-+.|++++=++.. .+.+|...++..|+
T Consensus 19 ~A~sL~eL~~K~~~~l~l~~-~~~lvL~eDGT~Vd 52 (79)
T cd06538 19 MADSLEDLLNKVLDALLLDC-ISSLVLDEDGTGVD 52 (79)
T ss_pred EcCCHHHHHHHHHHHcCCCC-ccEEEEecCCcEEc
Confidence 34689999999999999943 46677644444443
No 131
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=22.70 E-value=2e+02 Score=17.79 Aligned_cols=45 Identities=9% Similarity=0.045 Sum_probs=35.2
Q ss_pred eEEEEcCCCCeeeEEecCCCcHHHHHHHHHHhcCCCCC-ceEEEeC
Q psy7980 11 LLRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKPE-MCTAYDS 55 (93)
Q Consensus 11 ~irv~LPn~QrT~V~vrpG~tlrdaL~Kalk~R~L~~~-~C~Vy~~ 55 (93)
-|-|-..+|+...+++.+..|+.|-=.++-++-|+.++ ...+|.+
T Consensus 3 ~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~~~~~~~qrL~~~G 48 (78)
T cd01804 3 NLNIHSTTGTRFDLSVPPDETVEGLKKRISQRLKVPKERLALLHRE 48 (78)
T ss_pred EEEEEECCCCEEEEEECCcCHHHHHHHHHHHHhCCChHHEEEEECC
Confidence 35566677888889999999999877777777788887 6677774
No 132
>TIGR00516 acpS holo-[acyl-carrier-protein] synthase. Formerly dpj. This enzyme adds the prosthetic group, phosphopantethiene, to the acyl carrier protein (ACP) apo-enzyme to generate the holo-enzyme. Related phosphopantethiene--protein transferases also exist. There is an orthologous domain in eukaryotic proteins.
Probab=22.67 E-value=1.1e+02 Score=20.73 Aligned_cols=28 Identities=29% Similarity=0.260 Sum_probs=21.5
Q ss_pred cHHHHHHHHHHh---cCCCCCceEEEeCCCC
Q psy7980 31 TLLEALSKAMKL---RNLKPEMCTAYDSNTG 58 (93)
Q Consensus 31 tlrdaL~Kalk~---R~L~~~~C~Vy~~~~~ 58 (93)
+.++|+.||+-. +++......|+....+
T Consensus 53 AaKEA~~KAlg~g~~~~~~~~diei~~~~~G 83 (121)
T TIGR00516 53 AAKEAFSKAFGTGIGRQLSFQDIEIRKDQNG 83 (121)
T ss_pred HHHHHHHHHhccccCCCccceEEEEEECCCc
Confidence 679999999975 5667778888885433
No 133
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=22.48 E-value=1.9e+02 Score=17.45 Aligned_cols=54 Identities=13% Similarity=0.230 Sum_probs=38.2
Q ss_pred EEEEcCCCCeeeEEecCCCcHHHHHHHHHHhcCCCCC-ceEEEeCCCCcccccCCC
Q psy7980 12 LRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKPE-MCTAYDSNTGVSLQWDTD 66 (93)
Q Consensus 12 irv~LPn~QrT~V~vrpG~tlrdaL~Kalk~R~L~~~-~C~Vy~~~~~~~i~wdtD 66 (93)
++++. ++....+.+.++.|..|-.++.-++-++..+ ...=|....+..|...+|
T Consensus 4 vK~~~-~~~~~~~~~~~~~s~~dL~~~i~~~~~~~~~~~~l~Y~Dedgd~v~l~sd 58 (81)
T smart00666 4 VKLRY-GGETRRLSVPRDISFEDLRSKVAKRFGLDNQSFTLKYQDEDGDLVSLTSD 58 (81)
T ss_pred EEEEE-CCEEEEEEECCCCCHHHHHHHHHHHhCCCCCCeEEEEECCCCCEEEecCH
Confidence 56677 6667778888899999999999888888744 455566544445554444
No 134
>PF13590 DUF4136: Domain of unknown function (DUF4136)
Probab=22.43 E-value=65 Score=21.42 Aligned_cols=19 Identities=11% Similarity=0.291 Sum_probs=16.3
Q ss_pred CcHHHHHHHHHHhcCCCCC
Q psy7980 30 QTLLEALSKAMKLRNLKPE 48 (93)
Q Consensus 30 ~tlrdaL~Kalk~R~L~~~ 48 (93)
..+++++.++|+.+|+...
T Consensus 38 ~~i~~~v~~~L~~~G~~~~ 56 (151)
T PF13590_consen 38 QRIQDAVEQELAAKGYRRV 56 (151)
T ss_pred HHHHHHHHHHHHHCCCeec
Confidence 4799999999999999543
No 135
>PF10671 TcpQ: Toxin co-regulated pilus biosynthesis protein Q; InterPro: IPR018927 The toxin-coregulated pilus (TCP) of Vibrio cholerae and the soluble TcpF protein that is secreted via the TCP biogenesis apparatus are essential for intestinal colonisation in the disease of cholera. TCP fibres are homopolymers of TcpA pilin, encoded by the first gene in the tcp biogenesis operon. TcpQ is part of an outer membrane complex of the TCP biogenesis apparatus, comprised of TcpC and TcpQ. TcpQ is required for proper localisation of TcpC to the outer membrane [, ]. This entry represents a C-terminal domain found in TcpQ and other pilus biosynthesis proteins.; PDB: 3OV5_A 2L4W_A.
Probab=22.12 E-value=93 Score=19.72 Aligned_cols=22 Identities=41% Similarity=0.437 Sum_probs=15.6
Q ss_pred EecCCCcHHHHHHHHHHhcCCC
Q psy7980 25 HIRKGQTLLEALSKAMKLRNLK 46 (93)
Q Consensus 25 ~vrpG~tlrdaL~Kalk~R~L~ 46 (93)
.+++|.||++.|.+=.+.-|.+
T Consensus 5 ~~~~g~tL~~~L~~Wa~~aGw~ 26 (84)
T PF10671_consen 5 TARKGETLREALERWAKQAGWT 26 (84)
T ss_dssp E--TT-BHHHHHHHHHHCTT-E
T ss_pred EECCCCcHHHHHHHHHHHCCCE
Confidence 4679999999999999888653
No 136
>PF13656 RNA_pol_L_2: RNA polymerase Rpb3/Rpb11 dimerisation domain; PDB: 2Y0S_L 1I3Q_K 4A3D_K 2JA8_K 3GTP_K 1R9T_K 3PO2_K 4A3J_K 3HOX_K 2JA7_K ....
Probab=22.07 E-value=1.2e+02 Score=19.25 Aligned_cols=21 Identities=33% Similarity=0.433 Sum_probs=16.1
Q ss_pred eeEEecCCCcHHHHHHHHHHh
Q psy7980 22 TSVHIRKGQTLLEALSKAMKL 42 (93)
Q Consensus 22 T~V~vrpG~tlrdaL~Kalk~ 42 (93)
-.|+.+.|.+..+||.+|++.
T Consensus 45 l~Iqt~~~~~p~~~l~~a~~~ 65 (77)
T PF13656_consen 45 LRIQTKGGITPIEALKKALED 65 (77)
T ss_dssp EEEEESTTS-HHHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHHH
Confidence 356777888999999999874
No 137
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=22.05 E-value=1.8e+02 Score=17.03 Aligned_cols=43 Identities=7% Similarity=0.163 Sum_probs=34.5
Q ss_pred EEEEcCCCCeeeEEecCCCcHHHHHHHHHHhcCCCCC-ceEEEe
Q psy7980 12 LRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKPE-MCTAYD 54 (93)
Q Consensus 12 irv~LPn~QrT~V~vrpG~tlrdaL~Kalk~R~L~~~-~C~Vy~ 54 (93)
|-|-.++++...+++.+-.|+.+.-.+.-+.-|++++ +..+|.
T Consensus 3 i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~g~~~~~q~L~~~ 46 (76)
T cd01803 3 IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA 46 (76)
T ss_pred EEEEcCCCCEEEEEECCcCcHHHHHHHHHHHhCCCHHHeEEEEC
Confidence 5566788888899999999999988888888888777 555554
No 138
>cd01774 Faf1_like2_UBX Faf1 ike-2 UBX domain. Faf1_like2 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=21.86 E-value=2.3e+02 Score=18.24 Aligned_cols=39 Identities=21% Similarity=0.099 Sum_probs=29.5
Q ss_pred CceEEEEcCCCCeeeEEecCCCcHHHHHHHHHHhcCCCCC
Q psy7980 9 GILLRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKPE 48 (93)
Q Consensus 9 ~~~irv~LPn~QrT~V~vrpG~tlrdaL~Kalk~R~L~~~ 48 (93)
..-|.+-||||+|-.--+..--||.+-..=. ..++..++
T Consensus 4 ~~~I~iRlp~G~Rl~rrF~~~~tl~~l~~fv-~~~~~~~~ 42 (85)
T cd01774 4 TVKIVFKLPNGTRVERRFLFTQSLRVIHDFL-FSLKETPE 42 (85)
T ss_pred eEEEEEECCCCCEEEEEeCCCCcHHHHHHHH-HhCCCCCC
Confidence 3468899999999999999999998666555 44555554
No 139
>PF00817 IMS: impB/mucB/samB family; InterPro: IPR001126 In Escherichia coli, UV and many chemicals appear to cause mutagenesis by a process of translesion synthesis that requires DNA polymerase III and the SOS-regulated proteins UmuD, UmuC and RecA. This machinery allows the replication to continue through DNA lesion, and therefore avoid lethal interruption of DNA replication after DNA damage []. UmuC is a well conserved protein in prokaryotes, with a homologue in yeast species. Proteins currently known to belong to this family are listed below: E. coli MucB protein. Plasmid-born analogue of the UmuC protein. Saccharomyces cerevisiae (Baker's yeast) Rev1 protein. Homologue of UmuC also required for normal induction of mutations by physical and chemical agents. Salmonella typhimurium ImpB protein. Plasmid-born analogue of the UmuC protein. Bacterial UmuC protein. E. coli DNA-damage-inducible protein P (DinP). S. typhimurium SamB homologue of UmuC plasmid associated. ; GO: 0003684 damaged DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006281 DNA repair; PDB: 3BJY_A 2AQ4_A 3OSP_A 4DL7_A 4DL6_A 3TQ1_A 3MR2_A 4EEY_A 3MR3_A 4DL4_A ....
Probab=21.79 E-value=67 Score=21.93 Aligned_cols=15 Identities=40% Similarity=0.521 Sum_probs=12.6
Q ss_pred EEecCCCcHHHHHHH
Q psy7980 24 VHIRKGQTLLEALSK 38 (93)
Q Consensus 24 V~vrpG~tlrdaL~K 38 (93)
-.|++||++.+|++.
T Consensus 45 ~GV~~Gm~~~~A~~l 59 (149)
T PF00817_consen 45 AGVRPGMPLAEALAL 59 (149)
T ss_dssp TTSTTTSBHHHHHHH
T ss_pred hccccchhhhhHhhh
Confidence 357899999999984
No 140
>cd04938 TGS_Obg-like TGS_Obg-like: The C-terminal TGS domain of Obg-like GTPases such as those present in DRG (developmentally regulated GTP-binding protein), and GTP-binding proteins Ygr210 and YchF. The TGS domain (named after the ThrRS, GTPase, and SpoT proteins where it occurs) is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information on the function of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=21.26 E-value=1.9e+02 Score=18.29 Aligned_cols=31 Identities=23% Similarity=0.247 Sum_probs=21.1
Q ss_pred eEEEEc-CCCCe-----------eeEEecCCCcHHHHHHHHHH
Q psy7980 11 LLRAQL-PNQQR-----------TSVHIRKGQTLLEALSKAMK 41 (93)
Q Consensus 11 ~irv~L-Pn~Qr-----------T~V~vrpG~tlrdaL~Kalk 41 (93)
+++||- +|++. --+-++.|.|+.|+..+.-+
T Consensus 1 li~VYpv~~~~~~~~~~~g~d~~~~~~l~~g~tv~d~a~~IH~ 43 (76)
T cd04938 1 LIPVYPVKNIHTFTNGSGGNVFRDCVLVKKGTTVGDVARKIHG 43 (76)
T ss_pred CEEEEEcCCCccccCcCCCCccceeEEEcCCCCHHHHHHHHhH
Confidence 467777 55533 23556789999998886654
No 141
>KOG2894|consensus
Probab=20.96 E-value=1e+02 Score=25.40 Aligned_cols=23 Identities=39% Similarity=0.650 Sum_probs=20.9
Q ss_pred CCeeeEEecCCCcHHHHHHHHHH
Q psy7980 19 QQRTSVHIRKGQTLLEALSKAMK 41 (93)
Q Consensus 19 ~QrT~V~vrpG~tlrdaL~Kalk 41 (93)
|-|..|.||.|-|+.+.|-|+++
T Consensus 198 gHRr~v~~rKGnti~qfL~~~~e 220 (331)
T KOG2894|consen 198 GHRRNVKVRKGNTIQQFLQKALE 220 (331)
T ss_pred CcceeeeecCCChHHHHHHHHHH
Confidence 56788999999999999999986
No 142
>PF14044 NETI: NETI protein
Probab=20.89 E-value=1.3e+02 Score=19.03 Aligned_cols=24 Identities=21% Similarity=0.400 Sum_probs=19.6
Q ss_pred EEecCCCcHHHHHHHHHHhcCCCCC
Q psy7980 24 VHIRKGQTLLEALSKAMKLRNLKPE 48 (93)
Q Consensus 24 V~vrpG~tlrdaL~Kalk~R~L~~~ 48 (93)
..|-.+.||-|||+ .|+.-|..|-
T Consensus 2 FeV~enETI~~CL~-RM~~eGY~Pv 25 (57)
T PF14044_consen 2 FEVEENETISDCLA-RMKKEGYMPV 25 (57)
T ss_pred eeccCCCcHHHHHH-HHHHcCCCce
Confidence 46788999999998 5888888663
No 143
>PRK07322 adenine phosphoribosyltransferase; Provisional
Probab=20.79 E-value=1.2e+02 Score=21.69 Aligned_cols=46 Identities=13% Similarity=0.158 Sum_probs=31.8
Q ss_pred ecCCCcHHHHHHHHHHhcCCCC-CceEEEeCCCCcccccCCCCCCcCCceeEEEeeccccc
Q psy7980 26 IRKGQTLLEALSKAMKLRNLKP-EMCTAYDSNTGVSLQWDTDSDHLPTTEIRVEVMEGNLA 85 (93)
Q Consensus 26 vrpG~tlrdaL~Kalk~R~L~~-~~C~Vy~~~~~~~i~wdtD~~~L~~eEl~Ve~ld~~p~ 85 (93)
+.-|-|++ ++.+.|++.|-.. ..++|+..++ +++|+-|-++.++|+
T Consensus 130 itTG~Tl~-aa~~~L~~~GA~~V~~~~v~~~~~-------------~~~~~~~~~~~~~~~ 176 (178)
T PRK07322 130 VSTGGTLT-ALERLVERAGGQVVAKAAIFAEGD-------------ASNRLDVIYLAHLPL 176 (178)
T ss_pred ccccHHHH-HHHHHHHHcCCEEEEEEEEEEcCC-------------CCCCCceEeecccCC
Confidence 35788896 6677888888654 4556666444 457777778777775
No 144
>PRK14658 acpS 4'-phosphopantetheinyl transferase; Provisional
Probab=20.34 E-value=1.3e+02 Score=20.64 Aligned_cols=31 Identities=19% Similarity=0.102 Sum_probs=23.2
Q ss_pred cHHHHHHHHHHhcCCCCCceEEEeCCCCcccc
Q psy7980 31 TLLEALSKAMKLRNLKPEMCTAYDSNTGVSLQ 62 (93)
Q Consensus 31 tlrdaL~Kalk~R~L~~~~C~Vy~~~~~~~i~ 62 (93)
..++|+.|||.. |+...+..|.....+.++-
T Consensus 53 AaKEA~~KAlgt-g~~~~dieI~~~~~G~p~~ 83 (115)
T PRK14658 53 ACKEAVMKALKL-KYGYGDILILKTENQRQVY 83 (115)
T ss_pred HHHHHHHHHhCC-CCCceEEEEEECCCCCeEE
Confidence 578999999974 7777888888865444553
No 145
>PRK05464 Na(+)-translocating NADH-quinone reductase subunit F; Provisional
Probab=20.29 E-value=1.3e+02 Score=24.13 Aligned_cols=44 Identities=14% Similarity=0.148 Sum_probs=28.9
Q ss_pred eEEEEcCCCCeeeEEecCCCcHHHHHHHHH-----HhcC-CCCCceEEEe
Q psy7980 11 LLRAQLPNQQRTSVHIRKGQTLLEALSKAM-----KLRN-LKPEMCTAYD 54 (93)
Q Consensus 11 ~irv~LPn~QrT~V~vrpG~tlrdaL~Kal-----k~R~-L~~~~C~Vy~ 54 (93)
.+.+.+.+.....+++.+|.||-||+.++= .=+| -.+..|.|+.
T Consensus 35 ~~~i~~~~~~~~~~~~~~g~tLL~a~~~~gi~i~~~C~g~G~CgtC~v~v 84 (409)
T PRK05464 35 DVTIKINGDPEKTITVPAGGKLLGALASNGIFLSSACGGGGSCGQCRVKV 84 (409)
T ss_pred cEEEEEcCCCcEEEEECCCchHHHHHHHcCCCcccCCCCccEeCCCEEEE
Confidence 466666554356799999999999976531 0122 3556788877
Done!