Query psy7980
Match_columns 93
No_of_seqs 63 out of 65
Neff 4.3
Searched_HMMs 29240
Date Fri Aug 16 23:46:02 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7980.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7980hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ny5_A Serine/threonine-protei 100.0 3.5E-46 1.2E-50 253.6 8.4 83 8-90 12-96 (96)
2 2l05_A Serine/threonine-protei 100.0 1.4E-42 4.7E-47 235.6 8.0 81 5-85 13-95 (95)
3 1rrb_A RAF-1 RBD, RAF proto-on 100.0 8.2E-43 2.8E-47 240.8 6.9 86 4-89 11-103 (107)
4 1wxm_A A-RAF proto-oncogene se 100.0 7.1E-42 2.4E-46 228.7 9.8 80 6-85 3-85 (86)
5 1c1y_B Proto-onkogene serine/t 100.0 9.5E-40 3.2E-44 214.6 7.1 72 9-80 1-77 (77)
6 1wfy_A Regulator of G-protein 97.6 6.9E-05 2.4E-09 51.2 4.9 74 9-82 16-90 (104)
7 2al3_A TUG long isoform; TUG U 97.3 0.00067 2.3E-08 45.1 6.4 55 10-66 10-64 (90)
8 2daj_A KIAA0977 protein, COBL- 96.2 0.011 3.9E-07 39.4 5.8 67 11-77 12-79 (91)
9 1wgr_A Growth factor receptor- 95.3 0.041 1.4E-06 36.8 5.6 46 8-53 8-54 (100)
10 2kzr_A Ubiquitin thioesterase 94.5 0.14 4.8E-06 31.6 6.2 68 11-79 2-76 (86)
11 3ivf_A Talin-1; FERM domain, c 91.6 0.25 8.7E-06 37.6 4.9 47 8-54 84-131 (371)
12 1wju_A NEDD8 ultimate buster-1 90.7 0.91 3.1E-05 29.9 6.4 45 11-55 17-66 (100)
13 1xlq_A Putidaredoxin, PDX; [2F 90.5 0.36 1.2E-05 30.6 4.2 45 11-55 2-53 (106)
14 2bt6_A Adrenodoxin 1; rutheniu 89.4 0.46 1.6E-05 30.3 4.0 41 11-55 8-60 (108)
15 3qij_A Protein 4.1; cytoskelet 88.7 0.73 2.5E-05 34.3 5.2 39 9-47 17-55 (296)
16 1uwm_A Ferredoxin VI, FDVI; el 88.5 0.51 1.7E-05 29.9 3.7 44 11-54 2-52 (106)
17 2y5c_A Adrenodoxin-like protei 88.1 0.68 2.3E-05 29.6 4.1 45 10-54 6-56 (109)
18 3au4_A Myosin-X; protein-prote 87.8 1.7 6E-05 34.7 7.2 45 10-54 217-263 (555)
19 3lxf_A Ferredoxin; iron, iron- 87.5 0.79 2.7E-05 29.4 4.2 44 11-54 2-52 (104)
20 1h4r_A Merlin; FERM, neurofibr 87.1 0.8 2.7E-05 33.8 4.6 38 9-47 22-59 (314)
21 1b9r_A Protein (terpredoxin); 87.1 0.52 1.8E-05 29.8 3.1 44 11-54 2-52 (105)
22 1ef1_A Moesin; membrane, FERM 87.0 0.62 2.1E-05 34.0 3.8 37 11-48 3-39 (294)
23 2j0j_A Focal adhesion kinase 1 86.9 0.61 2.1E-05 38.0 4.1 38 11-48 9-50 (656)
24 2wlb_A ETP1-FD, electron trans 86.8 1.1 3.9E-05 28.1 4.6 40 11-54 5-54 (103)
25 4gmv_A RAS-associated and plec 86.4 1.2 4.3E-05 33.9 5.4 46 9-54 31-77 (281)
26 3tca_A Amyloid beta A4 precurs 86.4 1.3 4.5E-05 31.6 5.2 40 9-48 34-73 (291)
27 3hk0_A Growth factor receptor- 86.4 0.86 2.9E-05 34.3 4.4 42 7-48 6-47 (256)
28 2al6_A Focal adhesion kinase 1 85.3 0.78 2.7E-05 35.2 3.8 44 11-54 9-57 (375)
29 2bs2_B Quinol-fumarate reducta 85.0 2.7 9.1E-05 30.0 6.3 68 20-88 24-102 (241)
30 1wjn_A Tubulin-folding protein 83.3 6.1 0.00021 24.5 8.5 71 9-79 7-91 (97)
31 3hui_A Ferredoxin; cytochrome 83.2 1.3 4.5E-05 29.7 3.8 29 11-39 23-51 (126)
32 1frr_A Ferredoxin I; electron 82.5 1.2 4.1E-05 27.4 3.1 38 12-54 4-50 (95)
33 2i1j_A Moesin; FERM, coiled-co 82.0 1.6 5.5E-05 36.0 4.6 40 7-47 2-41 (575)
34 2kmm_A Guanosine-3',5'-BIS(dip 81.8 2.5 8.4E-05 24.6 4.2 27 11-39 2-28 (73)
35 2pjh_A Protein NPL4, nuclear p 81.1 4.3 0.00015 25.0 5.4 68 10-78 5-78 (80)
36 2wdq_B Succinate dehydrogenase 80.7 2.6 9E-05 29.9 4.8 67 20-87 21-101 (238)
37 1awd_A Ferredoxin; electron tr 80.0 1.6 5.3E-05 27.1 3.1 38 12-54 3-49 (94)
38 2h88_B Succinate dehydrogenase 79.4 4.5 0.00015 29.3 5.8 67 20-87 31-109 (252)
39 2kc2_A Talin-1, F1; FERM, adhe 78.4 3.2 0.00011 28.5 4.5 38 11-48 13-50 (128)
40 2c5l_C Phosphoinositide-specif 77.8 4.7 0.00016 27.5 5.2 36 11-46 9-46 (117)
41 3pvl_A Myosin VIIA isoform 1; 77.8 3.6 0.00012 34.4 5.4 46 9-54 263-309 (655)
42 1wgy_A RAP guanine nucleotide 76.8 14 0.00048 24.6 9.0 76 8-84 8-90 (104)
43 2l32_A Small archaeal modifier 76.5 10 0.00036 23.1 7.3 48 21-77 12-59 (74)
44 2dhz_A RAP guanine nucleotide 76.2 10 0.00036 25.9 6.6 39 9-47 9-47 (120)
45 1wri_A Ferredoxin II, ferredox 76.1 3.2 0.00011 25.6 3.7 40 11-54 3-49 (93)
46 1l5p_A Ferredoxin; [2Fe-2S] cl 74.8 1.7 5.8E-05 27.0 2.1 27 12-39 3-29 (93)
47 1a70_A Ferredoxin; iron-sulfur 74.6 2.7 9.3E-05 26.1 3.1 39 11-54 4-51 (97)
48 2io0_B Small ubiquitin-related 73.2 15 0.0005 23.1 7.6 69 8-78 4-75 (91)
49 2dcl_A Hypothetical UPF0166 pr 72.7 10 0.00034 25.7 5.8 64 11-82 11-79 (127)
50 1k8r_B Protein kinase BYR2; si 71.8 6.8 0.00023 26.6 4.6 42 12-55 3-45 (110)
51 1i7h_A Ferredoxin; 2Fe-2S,elec 71.4 4.4 0.00015 25.7 3.6 40 11-54 3-55 (111)
52 3cf6_E RAP guanine nucleotide 71.4 9.3 0.00032 31.8 6.3 60 9-69 352-413 (694)
53 1o51_A Hypothetical protein TM 71.1 19 0.00066 23.8 6.8 65 11-82 15-83 (114)
54 3vqi_A ATG5; autophagy, E3-lik 70.6 2.7 9.2E-05 32.0 2.7 33 9-41 199-234 (274)
55 1iue_A Ferredoxin; electron tr 69.7 4.1 0.00014 25.3 3.1 39 11-54 4-51 (98)
56 1ffv_A CUTS, iron-sulfur prote 68.3 7.7 0.00026 27.2 4.5 67 12-80 6-80 (163)
57 1wf9_A NPL4 family protein; be 68.3 18 0.00061 22.9 6.0 45 9-54 7-52 (107)
58 3vr8_B Iron-sulfur subunit of 67.0 11 0.00037 28.6 5.4 67 20-87 55-133 (282)
59 1n62_A Carbon monoxide dehydro 66.7 8.7 0.0003 27.0 4.5 67 12-80 6-80 (166)
60 2io1_B Small ubiquitin-related 66.3 21 0.00073 22.4 7.2 46 9-54 7-52 (94)
61 3ah7_A [2Fe-2S]ferredoxin; [2F 65.1 7.2 0.00025 24.7 3.6 43 12-54 4-55 (113)
62 3n3k_B Ubiquitin; hydrolase, p 64.9 18 0.00061 20.9 7.7 45 10-54 4-49 (85)
63 3n9z_C Adrenodoxin; cytochrome 64.6 1.4 4.7E-05 29.5 0.0 43 12-54 8-58 (123)
64 1jq4_A Methane monooxygenase c 64.5 9.1 0.00031 23.6 3.9 28 12-39 7-34 (98)
65 1czp_A Ferredoxin I; [2Fe-2S] 64.0 8.3 0.00029 23.8 3.7 39 12-54 5-53 (98)
66 2daf_A FLJ35834 protein; hypot 63.8 17 0.00057 24.7 5.4 68 11-81 17-89 (118)
67 1wyw_B Ubiquitin-like protein 63.4 23 0.0008 21.8 5.9 46 10-55 22-67 (97)
68 1frd_A Heterocyst [2Fe-2S] fer 63.3 8.8 0.0003 23.6 3.7 39 12-54 5-53 (98)
69 4dwf_A HLA-B-associated transc 61.9 22 0.00077 21.1 5.7 47 9-55 5-52 (90)
70 2jg6_A DNA-3-methyladenine gly 61.1 4 0.00014 29.8 2.0 21 26-46 135-155 (186)
71 2dzi_A Ubiquitin-like protein 59.4 23 0.00077 20.3 8.1 47 8-54 6-52 (81)
72 2kj6_A Tubulin folding cofacto 58.9 31 0.0011 21.8 6.5 52 20-71 27-80 (97)
73 1wm3_A Ubiquitin-like protein 58.1 26 0.00088 20.5 7.2 45 11-55 3-47 (72)
74 4eew_A Large proline-rich prot 57.7 27 0.00092 20.6 5.7 50 5-54 13-63 (88)
75 1rm6_C 4-hydroxybenzoyl-COA re 56.3 8 0.00027 26.8 2.8 65 17-82 9-81 (161)
76 3kwl_A Uncharacterized protein 55.8 2.7 9.4E-05 34.0 0.3 63 20-87 43-109 (514)
77 3v6c_B Ubiquitin; structural g 55.3 31 0.0011 20.6 8.3 47 9-55 17-64 (91)
78 2ofk_A 3-methyladenine DNA gly 55.0 5.6 0.00019 28.9 1.8 18 29-46 138-155 (183)
79 4dxa_B KREV interaction trappe 54.2 19 0.00064 26.7 4.7 44 7-54 3-51 (322)
80 3phx_B Ubiquitin-like protein 53.3 30 0.001 19.9 8.3 47 9-55 4-51 (79)
81 3mtn_B UBA80, ubcep1, ubiquiti 53.1 30 0.001 19.8 7.9 45 10-54 4-49 (85)
82 1wj4_A KIAA0794 protein; UBX d 52.4 47 0.0016 21.9 8.8 71 10-81 44-120 (124)
83 1ndd_A NEDD8, protein (ubiquit 52.0 29 0.001 19.3 8.1 44 11-54 2-45 (76)
84 3hvz_A Uncharacterized protein 50.7 22 0.00074 22.0 3.9 26 11-38 7-32 (78)
85 3a4r_A Nfatc2-interacting prot 50.2 39 0.0013 20.2 8.3 46 9-54 7-53 (79)
86 3b08_A Polyubiquitin-C, ubiqui 49.1 48 0.0016 21.0 6.1 46 9-54 76-122 (152)
87 2uyz_B Small ubiquitin-related 49.1 36 0.0012 19.5 5.6 45 11-55 5-49 (79)
88 1wz0_A Ubiquitin-like protein 47.6 53 0.0018 21.0 8.4 47 9-55 24-70 (104)
89 4eku_A Protein-tyrosine kinase 47.4 19 0.00067 28.1 4.0 44 11-54 23-77 (392)
90 2h6l_A Hypothetical protein; N 47.3 20 0.00068 24.0 3.6 30 19-48 9-38 (146)
91 1t3q_A Quinoline 2-oxidoreduct 46.6 15 0.00051 25.4 2.9 63 11-75 11-80 (168)
92 2d07_B Ubiquitin-like protein 46.5 50 0.0017 20.4 7.7 47 9-55 17-63 (93)
93 3a9j_A Ubiquitin; protein comp 45.2 39 0.0013 18.8 8.1 44 11-54 2-45 (76)
94 3hwu_A Putative DNA-binding pr 45.1 26 0.0009 23.6 3.9 31 19-49 12-42 (147)
95 2k8h_A Small ubiquitin protein 45.1 61 0.0021 21.1 6.8 47 9-55 26-72 (110)
96 1we6_A Splicing factor, putati 43.9 57 0.0019 20.4 8.6 48 7-54 25-77 (111)
97 1we7_A SF3A1 protein; structur 43.6 59 0.002 20.5 5.8 48 7-54 23-81 (115)
98 1qw2_A Conserved hypothetical 42.4 6.6 0.00023 26.3 0.5 15 24-38 86-100 (102)
99 1kf6_B Fumarate reductase iron 41.7 37 0.0013 23.9 4.5 63 20-87 24-100 (243)
100 2p6y_A Hypothetical protein VC 41.6 26 0.00088 23.5 3.4 30 21-50 4-33 (142)
101 1wwt_A Threonyl-tRNA synthetas 40.7 45 0.0015 19.9 4.2 28 9-38 9-37 (88)
102 3ddc_B RAS association domain- 40.6 17 0.00057 26.2 2.4 42 13-54 80-123 (163)
103 2bye_A Phospholipase C, epsilo 39.8 30 0.001 23.3 3.5 44 11-54 11-57 (110)
104 3dbh_I NEDD8; cell cycle, acti 39.5 55 0.0019 18.9 7.8 47 9-55 12-59 (88)
105 2dt4_A Hypothetical protein PH 38.6 25 0.00087 23.4 3.0 30 19-48 9-38 (143)
106 4hcn_B Polyubiquitin, ubiquiti 38.5 66 0.0023 19.5 7.6 47 9-55 22-69 (98)
107 3htn_A Putative DNA binding pr 38.5 35 0.0012 23.0 3.8 33 17-49 13-45 (149)
108 3vdz_A Ubiquitin-40S ribosomal 37.8 75 0.0026 19.9 8.3 47 9-55 35-82 (111)
109 1wh3_A 59 kDa 2'-5'-oligoadeny 37.7 60 0.0021 18.8 7.1 48 7-54 5-52 (87)
110 4a3p_A Ubiquitin carboxyl-term 37.5 1.1E+02 0.0037 21.7 6.8 69 12-80 130-208 (217)
111 4gdk_B Autophagy protein 5; pr 37.4 25 0.00085 26.7 3.1 32 11-42 186-225 (275)
112 2eke_C Ubiquitin-like protein 37.1 84 0.0029 20.3 7.1 46 9-55 31-76 (106)
113 1krh_A Benzoate 1,2-dioxygenas 36.9 38 0.0013 24.6 3.9 44 11-54 5-53 (338)
114 3hrd_D Nicotinate dehydrogenas 35.7 21 0.00073 25.0 2.3 63 17-80 10-80 (160)
115 2dzk_A UBX domain-containing p 34.7 89 0.003 19.9 7.4 53 10-62 14-66 (109)
116 2dyo_A Autophagy protein 5; ub 34.5 22 0.00077 27.2 2.4 33 9-41 202-243 (297)
117 3qx1_A FAS-associated factor 1 34.2 76 0.0026 19.0 9.3 52 9-61 7-58 (84)
118 3p42_A Predicted protein; beta 33.7 19 0.00065 26.4 1.9 29 10-39 4-32 (236)
119 1yx5_B Ubiquitin; proteasome, 33.7 79 0.0027 19.0 8.4 44 11-54 2-45 (98)
120 2hx0_A Putative DNA-binding pr 33.2 45 0.0015 22.6 3.6 30 21-50 20-49 (154)
121 3c4i_A DNA-binding protein HU 32.9 25 0.00084 22.1 2.1 24 13-38 68-91 (99)
122 2cr5_A Reproduction 8; UBX dom 32.7 96 0.0033 19.7 6.8 70 11-81 25-99 (109)
123 1doi_A 2Fe-2S ferredoxin; halo 31.9 29 0.00098 23.0 2.4 38 16-54 33-75 (128)
124 2cu3_A Unknown function protei 30.9 76 0.0026 18.0 5.1 28 24-56 9-36 (64)
125 2eel_A Cell death activator CI 30.4 1.1E+02 0.0038 19.7 5.8 62 12-76 12-74 (91)
126 3rt3_B Ubiquitin-like protein 30.2 1.1E+02 0.0038 19.7 8.2 48 8-55 80-128 (159)
127 2ojr_A Ubiquitin; lanthide-bin 29.9 1E+02 0.0035 19.2 9.4 47 8-54 34-81 (111)
128 2hj1_A Hypothetical protein; s 29.0 38 0.0013 21.8 2.5 40 15-54 20-63 (97)
129 3u30_A Ubiquitin, linear DI-ub 28.9 1.3E+02 0.0043 19.9 7.9 47 9-55 20-67 (172)
130 3jyu_A Ubiquitin carboxyl-term 28.8 1.6E+02 0.0054 21.0 6.9 59 23-81 155-221 (231)
131 2kl0_A Putative thiamin biosyn 28.2 70 0.0024 19.1 3.5 28 24-56 10-37 (73)
132 1f0z_A THis protein; ubiquitin 27.7 88 0.003 17.8 3.8 46 24-75 10-57 (66)
133 1f7l_A Holo-(acyl carrier prot 27.6 56 0.0019 20.4 3.1 31 30-60 54-87 (121)
134 3gku_A Probable RNA-binding pr 26.7 37 0.0013 25.1 2.4 27 28-54 10-36 (225)
135 3pg6_A E3 ubiquitin-protein li 26.4 16 0.00056 26.2 0.4 43 11-64 78-123 (159)
136 1wxa_A Afadin, AF-6 protein; R 26.3 1.1E+02 0.0036 20.0 4.4 41 10-50 10-54 (116)
137 2was_A 3-oxoacyl-[acyl-carrier 25.9 40 0.0014 21.5 2.2 26 31-56 49-78 (122)
138 2wds_A Holo-[acyl-carrier-prot 25.9 54 0.0018 22.0 2.9 30 31-60 74-104 (143)
139 1wx8_A Riken cDNA 4931431F19; 25.5 1.1E+02 0.0038 18.1 6.2 43 11-54 19-62 (96)
140 1v5o_A 1700011N24RIK protein; 25.3 1.2E+02 0.0042 18.5 6.6 47 9-55 7-58 (102)
141 1t0y_A Tubulin folding cofacto 25.3 1.4E+02 0.0047 19.1 9.0 51 21-71 19-71 (122)
142 2jxx_A Nfatc2-interacting prot 25.2 1.4E+02 0.0047 19.0 7.8 45 10-54 26-71 (97)
143 3ukw_C Bimax1 peptide; arm rep 25.1 23 0.00077 18.5 0.7 14 55-68 6-19 (28)
144 1yqb_A Ubiquilin 3; structural 24.6 1.3E+02 0.0044 18.5 5.6 44 10-54 23-67 (100)
145 1sif_A Ubiquitin; hydrophobic 24.5 1.2E+02 0.004 18.0 5.8 46 9-54 9-55 (88)
146 3q3f_A Ribonuclease/ubiquitin 24.3 1.9E+02 0.0065 20.4 7.7 47 9-55 105-152 (189)
147 2la2_A Cecropin, papiliocin; a 24.2 15 0.00052 20.7 -0.1 13 28-40 11-23 (38)
148 3plu_A Ubiquitin-like modifier 24.0 1.5E+02 0.005 19.0 5.1 43 11-53 23-66 (93)
149 1vlb_A Aldehyde oxidoreductase 23.6 99 0.0034 26.8 4.7 65 15-80 6-79 (907)
150 3ivf_A Talin-1; FERM domain, c 23.6 89 0.003 23.3 4.0 43 11-54 5-51 (371)
151 3hyk_A Holo-[acyl-carrier-prot 23.5 75 0.0026 20.5 3.2 30 31-60 58-90 (122)
152 1ryj_A Unknown; beta/alpha pro 23.5 1.2E+02 0.004 17.6 5.7 46 22-76 16-62 (70)
153 1dgj_A Aldehyde oxidoreductase 22.7 97 0.0033 26.8 4.5 64 16-80 7-79 (907)
154 3h88_A Holo-[acyl-carrier-prot 22.7 70 0.0024 20.9 3.0 30 31-60 57-89 (129)
155 3ghd_A A cystathionine beta-sy 22.4 87 0.003 18.0 3.1 29 23-54 2-30 (70)
156 3f09_A Holo-[acyl-carrier-prot 22.4 48 0.0017 22.3 2.1 31 30-60 79-112 (143)
157 1owf_B IHF-beta, integration H 22.2 55 0.0019 20.0 2.2 18 20-37 74-91 (94)
158 2bwf_A Ubiquitin-like protein 22.1 1.1E+02 0.0038 16.9 7.2 43 12-55 7-49 (77)
159 3l0w_B Monoubiquitinated proli 21.7 1.9E+02 0.0066 19.5 6.0 44 12-55 3-47 (169)
160 3rhi_A DNA-binding protein HU; 21.7 38 0.0013 20.9 1.4 17 20-36 76-92 (93)
161 2fp7_A Serine protease subunit 21.2 42 0.0015 19.8 1.5 18 61-79 17-34 (54)
162 3m62_B UV excision repair prot 21.1 1.6E+02 0.0053 18.2 7.8 65 12-79 4-72 (106)
163 2uwq_A Apoptosis-stimulating o 21.0 1.4E+02 0.005 19.1 4.1 44 9-54 6-51 (86)
164 3fio_A A cystathionine beta-sy 21.0 1E+02 0.0035 16.4 3.1 30 23-55 2-31 (70)
165 2ijo_A Polyprotein; WEST NIle 20.9 43 0.0015 20.1 1.5 18 61-79 13-30 (58)
166 1tke_A Threonyl-tRNA synthetas 20.7 97 0.0033 21.7 3.5 26 12-39 2-27 (224)
167 2kjr_A CG11242; UBL, ubiquitin 20.5 1.6E+02 0.0055 18.2 7.1 55 17-71 23-80 (95)
168 1ttn_A DC-UBP, dendritic cell- 20.5 1.6E+02 0.0055 18.1 6.3 46 10-55 24-70 (106)
169 1mul_A NS2, HU-2, DNA binding 20.3 43 0.0015 20.4 1.4 21 14-36 69-89 (90)
170 2k5p_A THis protein, thiamine- 20.1 1.2E+02 0.0042 18.2 3.5 32 18-55 6-40 (78)
No 1
>3ny5_A Serine/threonine-protein kinase B-RAF; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics consortium; HET: MSE; 1.99A {Homo sapiens} SCOP: d.15.1.0
Probab=100.00 E-value=3.5e-46 Score=253.64 Aligned_cols=83 Identities=36% Similarity=0.555 Sum_probs=75.5
Q ss_pred CCceEEEEcCCCCeeeEEecCCCcHHHHHHHHHHhcCCCCCceEEEeC--CCCcccccCCCCCCcCCceeEEEeeccccc
Q psy7980 8 RGILLRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKPEMCTAYDS--NTGVSLQWDTDSDHLPTTEIRVEVMEGNLA 85 (93)
Q Consensus 8 ~~~~irv~LPn~QrT~V~vrpG~tlrdaL~Kalk~R~L~~~~C~Vy~~--~~~~~i~wdtD~~~L~~eEl~Ve~ld~~p~ 85 (93)
++++|||||||||||+|+||||+|+||||+||||+|||+|+||+||+. +++++|+||+|++.|+||||+||++|+||+
T Consensus 12 ~~~~irvhLPNqQrT~V~VrpG~tlrdaL~KaLk~R~L~pe~C~Vy~~~~~~~~~I~WdtDi~~L~geEL~Ve~ld~~pl 91 (96)
T 3ny5_A 12 QKPIVRVFLPNKQRTVVPARCGVTVRDSLKKALMMRGLIPECCAVYRIQDGEKKPIGWDTDISWLTGEELHVEVLENVPL 91 (96)
T ss_dssp SSCEEEEEETTTEEEEEECCTTCBHHHHHHHHHHTTTCCGGGEEEEECC---CEEECTTBBGGGGTTCEEEEEECCCCCB
T ss_pred hhCEEEEECCCCceEEEEecCCcCHHHHHHHHHHHcCCChHHeEEEEccCCCcCcccccccchhcccceEEehhhhcCCC
Confidence 489999999999999999999999999999999999999999999994 779999999999999999999999999999
Q ss_pred ccccc
Q psy7980 86 LSSLL 90 (93)
Q Consensus 86 ~~h~f 90 (93)
++|||
T Consensus 92 ttHnF 96 (96)
T 3ny5_A 92 TTHNF 96 (96)
T ss_dssp C----
T ss_pred cccCC
Confidence 99999
No 2
>2l05_A Serine/threonine-protein kinase B-RAF; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=100.00 E-value=1.4e-42 Score=235.59 Aligned_cols=81 Identities=38% Similarity=0.591 Sum_probs=76.6
Q ss_pred cCCCCceEEEEcCCCCeeeEEecCCCcHHHHHHHHHHhcCCCCCceEEEeC--CCCcccccCCCCCCcCCceeEEEeecc
Q psy7980 5 LVPRGILLRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKPEMCTAYDS--NTGVSLQWDTDSDHLPTTEIRVEVMEG 82 (93)
Q Consensus 5 ~~p~~~~irv~LPn~QrT~V~vrpG~tlrdaL~Kalk~R~L~~~~C~Vy~~--~~~~~i~wdtD~~~L~~eEl~Ve~ld~ 82 (93)
++|.+.+|||||||||||+|+||||+|+||||+||||+|||+|+||+||+. +++++||||+|++.|.||||+||++|+
T Consensus 13 ~~~~~~~irvhLPNqQrT~V~VrpG~tlrdAL~KaLk~R~L~pe~C~Vy~~~~~~~~~IdWdtDi~~L~~eEL~Ve~ld~ 92 (95)
T 2l05_A 13 KSPQKPIVRVFLPNKQRTVVPARCGVTVRDSLKKALMMRGLIPECCAVYRIQDGEKKPIGWDTDISWLTGEELHVEVLEN 92 (95)
T ss_dssp CCCCSCEEEEEETTTEEEEEECCTTCBHHHHHHHHHHHHTCCGGGEEEEEEETTEEEEECTTSBGGGGTTCEEEEEESCC
T ss_pred CCCCccEEEEECCCCCeEEEEecCCcCHHHHHHHHHHHcCCCHHHcEEEEcCCCCccccchhHhhhhccCcEEEEEEecC
Confidence 455577999999999999999999999999999999999999999999984 778999999999999999999999999
Q ss_pred ccc
Q psy7980 83 NLA 85 (93)
Q Consensus 83 ~p~ 85 (93)
||+
T Consensus 93 ~P~ 95 (95)
T 2l05_A 93 VPL 95 (95)
T ss_dssp SCC
T ss_pred CCC
Confidence 995
No 3
>1rrb_A RAF-1 RBD, RAF proto-oncogene serine/threonine-protein kinase; RAS-binding domain, transferase, riken structural genomics/proteomics initiative; NMR {Rattus norvegicus} SCOP: d.15.1.5
Probab=100.00 E-value=8.2e-43 Score=240.84 Aligned_cols=86 Identities=34% Similarity=0.555 Sum_probs=67.6
Q ss_pred ecCCCCc--eEEEEcCCCCeeeEEecCCCcHHHHHHHHHHhcCCCCCceEEEeC-----CCCcccccCCCCCCcCCceeE
Q psy7980 4 CLVPRGI--LLRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKPEMCTAYDS-----NTGVSLQWDTDSDHLPTTEIR 76 (93)
Q Consensus 4 ~~~p~~~--~irv~LPn~QrT~V~vrpG~tlrdaL~Kalk~R~L~~~~C~Vy~~-----~~~~~i~wdtD~~~L~~eEl~ 76 (93)
+++|.|. +|||||||||||+|+||||+|+||||+||||+|||+||||+||+. +++.+|+||+|++.|.||||+
T Consensus 11 ~~sp~k~~~~ir~hLPNqQrT~V~VrpG~tlrdaL~KaLk~R~L~pe~C~Vy~~~~~~~~~~~~i~WdtDi~~L~geEL~ 90 (107)
T 1rrb_A 11 RGSSSKTSNTIRVFLPNKQRTVVNVRNGMSLHDCLMKALKVRGLQPECCAVFRLLQEHKGKKARLDWNTDAASLIGEELQ 90 (107)
T ss_dssp --------CEEEEECTTTCCEEEECCTTCBHHHHHHHHHHHHTCCTTTEEEEECCCSCSSSCEECCTTCBHHHHTTSEEE
T ss_pred CCCCccccceEEEECCCCCeEEEEecCCcCHHHHHHHHHHHcCCCHHHceeEEccccCCCcccccchhhhhhhccCcEEE
Confidence 3556544 899999999999999999999999999999999999999999974 566799999999999999999
Q ss_pred EEeeccccccccc
Q psy7980 77 VEVMEGNLALSSL 89 (93)
Q Consensus 77 Ve~ld~~p~~~h~ 89 (93)
||++|+||+.+|.
T Consensus 91 Ve~ld~~p~~~~~ 103 (107)
T 1rrb_A 91 VDFLKLAAALEHH 103 (107)
T ss_dssp EEEC---------
T ss_pred EEEcccCcchhcc
Confidence 9999999999875
No 4
>1wxm_A A-RAF proto-oncogene serine/threonine-protein kinase; RAS-binding domain (RBD), ubiquitin-like fold, A-RAF kinase, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=100.00 E-value=7.1e-42 Score=228.66 Aligned_cols=80 Identities=34% Similarity=0.576 Sum_probs=75.3
Q ss_pred CCC-CceEEEEcCCCCeeeEEecCCCcHHHHHHHHHHhcCCCCCceEEEe--CCCCcccccCCCCCCcCCceeEEEeecc
Q psy7980 6 VPR-GILLRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKPEMCTAYD--SNTGVSLQWDTDSDHLPTTEIRVEVMEG 82 (93)
Q Consensus 6 ~p~-~~~irv~LPn~QrT~V~vrpG~tlrdaL~Kalk~R~L~~~~C~Vy~--~~~~~~i~wdtD~~~L~~eEl~Ve~ld~ 82 (93)
+++ .++|||||||||||+|+||||||+||||+||||+|||+|+||+||+ .+++.+|+||+|++.|.||||+||++|+
T Consensus 3 ~~k~~~~irvhLPn~QrT~V~VrpG~tlrdaL~KaLk~R~L~pe~C~Vy~~~~~~~~~IdWdtDi~~L~~eEL~Ve~ld~ 82 (86)
T 1wxm_A 3 SGSSGGTVKVYLPNKQRTVVTVRDGMSVYDSLDKALKVRGLNQDCCVVYRLIKGRKTVTAWDTAIAPLDGEELIVEVLSG 82 (86)
T ss_dssp CCCCSSEEEEECSSSCEEEEECCSSCBSHHHHHHHHHTTTCCSSSEEEEEESSSCEEEECSSSBSTTCSSCEEEEEECCS
T ss_pred cccccceEEEECCCCCeEEEEecCCcCHHHHHHHHHHHcCCCHHHeEEEEcCCCCccccchhHhhhhccCcEEEEEEccc
Confidence 444 4599999999999999999999999999999999999999999998 4778999999999999999999999999
Q ss_pred ccc
Q psy7980 83 NLA 85 (93)
Q Consensus 83 ~p~ 85 (93)
||.
T Consensus 83 ~~~ 85 (86)
T 1wxm_A 83 PSS 85 (86)
T ss_dssp CSC
T ss_pred CCC
Confidence 985
No 5
>1c1y_B Proto-onkogene serine/threonine protein kinase RAF-1; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: d.15.1.5 PDB: 1gua_B* 1rfa_A 3kud_B* 3kuc_B*
Probab=100.00 E-value=9.5e-40 Score=214.64 Aligned_cols=72 Identities=38% Similarity=0.695 Sum_probs=67.6
Q ss_pred CceEEEEcCCCCeeeEEecCCCcHHHHHHHHHHhcCCCCCceEEEeC-----CCCcccccCCCCCCcCCceeEEEee
Q psy7980 9 GILLRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKPEMCTAYDS-----NTGVSLQWDTDSDHLPTTEIRVEVM 80 (93)
Q Consensus 9 ~~~irv~LPn~QrT~V~vrpG~tlrdaL~Kalk~R~L~~~~C~Vy~~-----~~~~~i~wdtD~~~L~~eEl~Ve~l 80 (93)
+++|||||||||||+|+||||+|+||||+||||+|||+|+||+||+. +++.+|+||+|++.|.||||+||++
T Consensus 1 ~~~irvhLPn~QrT~V~VrpG~tlrdaL~KaLk~R~L~pe~C~V~~~~~~~~~~~~~i~WdtD~~~L~~eEl~Ve~l 77 (77)
T 1c1y_B 1 SNTIRVFLPNKQRTVVNVRNGMSLHDCLMKALKVRGLQPECCAVFRLLHEHKGKKARLDWNTDAASLIGEELQVDFL 77 (77)
T ss_dssp CCEEEEEETTTEEEEEECCTTCBHHHHHHHHHHTTTCCGGGEEEEEEEGGGSSEEEEECTTSBGGGGTTCEEEEEEC
T ss_pred CceEEEECCCCceEEEEecCCcCHHHHHHHHHHHcCCCHHHeEEEEeccCCCCCccccchhHhhhhccCceEEEEeC
Confidence 36899999999999999999999999999999999999999999974 4467999999999999999999985
No 6
>1wfy_A Regulator of G-protein signaling 14; RAP1/RAP2 interacting protein; regulators of G-protein signaling, RAS family, structural genomics; NMR {Mus musculus} SCOP: d.15.1.5
Probab=97.63 E-value=6.9e-05 Score=51.22 Aligned_cols=74 Identities=9% Similarity=0.147 Sum_probs=67.8
Q ss_pred CceEEEEc-CCCCeeeEEecCCCcHHHHHHHHHHhcCCCCCceEEEeCCCCcccccCCCCCCcCCceeEEEeecc
Q psy7980 9 GILLRAQL-PNQQRTSVHIRKGQTLLEALSKAMKLRNLKPEMCTAYDSNTGVSLQWDTDSDHLPTTEIRVEVMEG 82 (93)
Q Consensus 9 ~~~irv~L-Pn~QrT~V~vrpG~tlrdaL~Kalk~R~L~~~~C~Vy~~~~~~~i~wdtD~~~L~~eEl~Ve~ld~ 82 (93)
+...+.-| |++---.|-.+|+.++.|+|.-.|.+-||.++.-.|...+++.++|..+-++.|+|+-|.+|..+.
T Consensus 16 Rv~F~L~l~p~~ksI~IksKptK~l~evLrPIL~KY~l~l~qv~v~~~g~~~pLDl~~pVs~ldgqrl~Le~~~~ 90 (104)
T 1wfy_A 16 RITFQLELVGLERVVRISAKPTKRLQEALQPILAKHGLSLDQVVLHRPGEKQPMDLENPVSSVASQTLVLDTPPD 90 (104)
T ss_dssp CEEEEEEESSSSSEEEEEECSSSBTTTTTHHHHTTTTCCTTTCCBCCTTCSSCCCTTSBGGGSSSSCEEECCCSC
T ss_pred eEEEEEeccCCCcEEEEEecCCCcHHHHHHHHHHHcCCChhhEEEEecCCccccccCCchhhhcCcEEEEeeCCc
Confidence 44567767 999888899999999999999999999999999999889999999999999999999999998764
No 7
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=97.32 E-value=0.00067 Score=45.08 Aligned_cols=55 Identities=16% Similarity=0.262 Sum_probs=46.6
Q ss_pred ceEEEEcCCCCeeeEEecCCCcHHHHHHHHHHhcCCCCCceEEEeCCCCcccccCCC
Q psy7980 10 ILLRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKPEMCTAYDSNTGVSLQWDTD 66 (93)
Q Consensus 10 ~~irv~LPn~QrT~V~vrpG~tlrdaL~Kalk~R~L~~~~C~Vy~~~~~~~i~wdtD 66 (93)
+.+-|.-||++|..|.|.||.++.|.|..||++-||.++.......+ +++|++.-
T Consensus 10 m~v~Vl~~n~rr~~VKvtp~t~L~~VL~eaC~K~gl~~~~~~Lkh~~--k~lDLSlp 64 (90)
T 2al3_A 10 SAVSVLAPNGRRHTVKVTPSTVLLQVLEDTCRRQDFNPSEYDLKFQR--TVLDLSLQ 64 (90)
T ss_dssp CCEEEECTTSCEEEECCCTTSBHHHHHHHHHHHTTCCGGGCEEEETT--EEESSSCB
T ss_pred cEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHhCCChhhCeEEeCC--Eeccccce
Confidence 35888899999999999999999999999999999999987776653 45665544
No 8
>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.24 E-value=0.011 Score=39.44 Aligned_cols=67 Identities=13% Similarity=0.107 Sum_probs=60.0
Q ss_pred eEEEEcCCCCeeeEEecCCCcHHHHHHHHHHhcCCCCCceEEEe-CCCCcccccCCCCCCcCCceeEE
Q psy7980 11 LLRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKPEMCTAYD-SNTGVSLQWDTDSDHLPTTEIRV 77 (93)
Q Consensus 11 ~irv~LPn~QrT~V~vrpG~tlrdaL~Kalk~R~L~~~~C~Vy~-~~~~~~i~wdtD~~~L~~eEl~V 77 (93)
.+-|++|-.|.|+|-|.|-++|.+-+--++.+-++.|+--..-+ ...+..+|++--+..|.=.||.+
T Consensus 12 RLvVNy~~tQKtVvRVSP~vpL~ellp~IC~Kcefdp~~~~Ll~d~~~~e~LdLskSLndlgirELya 79 (91)
T 2daj_A 12 RVVINFKKTQKTIVRVSPHASLQELAPIICSKCEFDPLHTLLLKDYQSQEPLDLTKSLNDLGLRELYA 79 (91)
T ss_dssp EEEEEETTTEEEEEEECSSSCTTTHHHHHHHHTTCCTTSEEEESCSSCCCBCCTTSCHHHHTCSEEEE
T ss_pred EEEEeecCcceeEEEeCCCCcHHHHHHHHhhcccCChhhEEEecCCCCCcccchhcchhhhhhhhhhe
Confidence 58899999999999999999999999999999999999988887 57888888888888887778765
No 9
>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=95.30 E-value=0.041 Score=36.78 Aligned_cols=46 Identities=11% Similarity=0.061 Sum_probs=39.9
Q ss_pred CCceEEEEcCCCCeeeEEecCCCcHHHHHHHHHHhcCCCCC-ceEEE
Q psy7980 8 RGILLRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKPE-MCTAY 53 (93)
Q Consensus 8 ~~~~irv~LPn~QrT~V~vrpG~tlrdaL~Kalk~R~L~~~-~C~Vy 53 (93)
++-.|++|..|+....|.|-+++|.+|++.....+.++..+ ..+.|
T Consensus 8 ~k~vvkvf~~Dgssksi~V~~~~Ta~dv~~~L~~K~~~~~~~~WaLv 54 (100)
T 1wgr_A 8 RPHVVKVYSEDGACRSVEVAAGATARHVCEMLVQRAHALSDETWGLV 54 (100)
T ss_dssp SCEEEEEEETTSCEEEEEECTTCCHHHHHHHHHCSSSCCCCCCCCEE
T ss_pred CCEEEEEEecCCCEEEEEECCCCcHHHHHHHHHHHcCCCCCCCeEEE
Confidence 46689999999999999999999999999999999998765 43444
No 10
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=94.50 E-value=0.14 Score=31.62 Aligned_cols=68 Identities=12% Similarity=0.091 Sum_probs=47.5
Q ss_pred eEEEEcCCCCeeeEE-ecCCCcHHHHHHHHHHhcCCCCCceEEEeCCCCcccccCCCCCCc------CCceeEEEe
Q psy7980 11 LLRAQLPNQQRTSVH-IRKGQTLLEALSKAMKLRNLKPEMCTAYDSNTGVSLQWDTDSDHL------PTTEIRVEV 79 (93)
Q Consensus 11 ~irv~LPn~QrT~V~-vrpG~tlrdaL~Kalk~R~L~~~~C~Vy~~~~~~~i~wdtD~~~L------~~eEl~Ve~ 79 (93)
.|+|-.++|+++ |. +-+..|+.|-..+.-++.|+.++.-.+..+...++++.+.|-..| .|..|+|..
T Consensus 2 ~i~vr~~~G~~~-v~~l~~~~Tv~~Lk~~I~~~~gi~~~~qrL~~~~p~k~l~l~~~~~tL~~~gl~~g~~l~v~~ 76 (86)
T 2kzr_A 2 RVRCKAKGGTHL-LQGLSSRTRLRELQGQIAAITGIAPGSQRILVGYPPECLDLSDRDITLGDLPIQSGDMLIVEE 76 (86)
T ss_dssp CEEEEETTEEEE-ECSCCTTCBHHHHHHHHHHHTCCCTTTCCCEESSCCCCCCCCCSSCBTTTSSCCTTCEEECCC
T ss_pred EEEEEcCCCCEE-eeecCCCCCHHHHHHHHHHHhCCCccceEEEeCCCCcccccCCCCCCHHHcCCCCCCEEEEEe
Confidence 488999999876 67 999999999999999999998764333333333566554333333 377777754
No 11
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=91.62 E-value=0.25 Score=37.56 Aligned_cols=47 Identities=6% Similarity=0.110 Sum_probs=39.4
Q ss_pred CCceEEEEcCCCCeeeEEecCCCcHHHHHHHHHHhcCCCC-CceEEEe
Q psy7980 8 RGILLRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKP-EMCTAYD 54 (93)
Q Consensus 8 ~~~~irv~LPn~QrT~V~vrpG~tlrdaL~Kalk~R~L~~-~~C~Vy~ 54 (93)
+...++|||||++.-.+.+.+..|.+|.+.+.+++-||.- +.-..|.
T Consensus 84 ~~~~~~V~l~dg~~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~ 131 (371)
T 3ivf_A 84 KQRPLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVR 131 (371)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHTTCSCGGGEEEEC
T ss_pred ceeEEEEECcCCCEEEEEECCCCCHHHHHHHHHHHcCCCCccccEEEE
Confidence 3457999999999999999999999999999999999853 3444444
No 12
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=90.71 E-value=0.91 Score=29.87 Aligned_cols=45 Identities=18% Similarity=0.138 Sum_probs=40.1
Q ss_pred eEEEEcCC----CCeeeEEecCCCcHHHHHHHHHHhcCCCCC-ceEEEeC
Q psy7980 11 LLRAQLPN----QQRTSVHIRKGQTLLEALSKAMKLRNLKPE-MCTAYDS 55 (93)
Q Consensus 11 ~irv~LPn----~QrT~V~vrpG~tlrdaL~Kalk~R~L~~~-~C~Vy~~ 55 (93)
.+.|++|| ++...++|.|..|+.+.=.++-++-|++++ ...+|.+
T Consensus 17 ti~V~~~~~~~~~~~~~lev~~~~TV~~lK~kI~~k~gip~~qQrLI~~G 66 (100)
T 1wju_A 17 TIEVFLPPRLKKDRKNLLETRLHITGRELRSKIAETFGLQENYIKIVINK 66 (100)
T ss_dssp EEEEECCTTTCCSSSEEEEEESSSBHHHHHHHHHHHTTCCSTTCEEEETT
T ss_pred EEEEEecCCCCCCcEEEEEeCCcCHHHHHHHHHHHHHCcCHHHeEEEeCC
Confidence 58999999 778899999999999999999999999887 6777874
No 13
>1xlq_A Putidaredoxin, PDX; [2Fe-2S], ferredoxin, oxidoreductase; 1.45A {Pseudomonas putida} SCOP: d.15.4.1 PDB: 1xlp_A 1oqr_A 1r7s_A 1pdx_A 1yji_A 1yjj_A 1oqq_A 1xln_A 1xlo_A 3lb8_C* 1put_A 1gpx_A
Probab=90.47 E-value=0.36 Score=30.63 Aligned_cols=45 Identities=13% Similarity=0.177 Sum_probs=31.9
Q ss_pred eEEEEcCCCCeeeEEecCCCcHHHHHHHHHHh-------cCCCCCceEEEeC
Q psy7980 11 LLRAQLPNQQRTSVHIRKGQTLLEALSKAMKL-------RNLKPEMCTAYDS 55 (93)
Q Consensus 11 ~irv~LPn~QrT~V~vrpG~tlrdaL~Kalk~-------R~L~~~~C~Vy~~ 55 (93)
.|.+..|++++..+++.+|.||-||+.++=-. .+=....|.|+..
T Consensus 2 ~V~~~~~~g~~~~~~~~~g~tlLeaa~~~gi~~i~~~C~g~G~CgtC~v~v~ 53 (106)
T 1xlq_A 2 KVVYVSHDGTRRELDVADGVSLMQAAVSNGIYDIVGDCGGSASCATCHVYVN 53 (106)
T ss_dssp EEEEECTTSCEEEEECCTTCBHHHHHHHTTCTTSCCTTCSSSSSCTTEEEEC
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHHHHHcCCCCCCcCCCCCcccCcCEEEEC
Confidence 45666799999999999999999988653211 1123346888873
No 14
>2bt6_A Adrenodoxin 1; ruthenium(II) bipyridyl complex, intramolecular electron TRA electron transport, metal-binding; HET: RUA; 1.50A {Bos taurus} SCOP: d.15.4.1 PDB: 1ayf_A 3n9y_C* 2jqr_B* 3na0_C*
Probab=89.40 E-value=0.46 Score=30.31 Aligned_cols=41 Identities=15% Similarity=0.191 Sum_probs=31.1
Q ss_pred eEEEEcCCCCeeeEEecCCCcHHHHHHHHHHhcCC------------CCCceEEEeC
Q psy7980 11 LLRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNL------------KPEMCTAYDS 55 (93)
Q Consensus 11 ~irv~LPn~QrT~V~vrpG~tlrdaL~Kalk~R~L------------~~~~C~Vy~~ 55 (93)
.|.+..|+++...+++.+|.||.||+..+ |+ ..-.|.|+..
T Consensus 8 ~V~~~~~~g~~~~v~~~~g~tLL~aa~~~----gi~i~~~~~Cgg~G~CgtC~v~v~ 60 (108)
T 2bt6_A 8 TVHFINRDGETLTTKGKIGDSLLDVVVQN----NLDIDGFGACEGTLACSTCHLIFE 60 (108)
T ss_dssp EEEEECTTSCEEEEEEETTCBHHHHHHHT----TCCCTTTTTTSSSSSBSTTEEECC
T ss_pred EEEEECCCCCEEEEEECCCChHHHHHHHc----CCCCCcccCCCCCcCcCCCEEEEC
Confidence 46666699998999999999999988643 33 3336889883
No 15
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A
Probab=88.72 E-value=0.73 Score=34.30 Aligned_cols=39 Identities=13% Similarity=0.021 Sum_probs=35.9
Q ss_pred CceEEEEcCCCCeeeEEecCCCcHHHHHHHHHHhcCCCC
Q psy7980 9 GILLRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKP 47 (93)
Q Consensus 9 ~~~irv~LPn~QrT~V~vrpG~tlrdaL~Kalk~R~L~~ 47 (93)
...++|||||++.-.+.|.+-.|.+|.+...+++-||.-
T Consensus 17 ~~~~~V~lldgt~~~~~vd~~tt~~el~~~v~~~l~L~e 55 (296)
T 3qij_A 17 QGHCKVSLLDDTVYECVVEKHAKGQDLLKRVCEHLNLLE 55 (296)
T ss_dssp CCEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHTCSS
T ss_pred eEEEEEEccCCCEEEEEECCCCCHHHHHHHHHHHcCCCC
Confidence 347999999999999999999999999999999999963
No 16
>1uwm_A Ferredoxin VI, FDVI; electron transport, metal-binding, iron-sulfur, iron, 2Fe-2S; 2.0A {Rhodobacter capsulatus} SCOP: d.15.4.1 PDB: 1e9m_A
Probab=88.49 E-value=0.51 Score=29.92 Aligned_cols=44 Identities=23% Similarity=0.183 Sum_probs=30.9
Q ss_pred eEEEEcCCCCeeeEEecCCCcHHHHHHHHHHh-------cCCCCCceEEEe
Q psy7980 11 LLRAQLPNQQRTSVHIRKGQTLLEALSKAMKL-------RNLKPEMCTAYD 54 (93)
Q Consensus 11 ~irv~LPn~QrT~V~vrpG~tlrdaL~Kalk~-------R~L~~~~C~Vy~ 54 (93)
.|.+..|++++..+++.+|.||-||+.++=-. ++=....|.|+.
T Consensus 2 ~v~~~~~~g~~~~~~~~~g~tlL~aa~~~gi~~i~~~C~g~G~CgtC~v~v 52 (106)
T 1uwm_A 2 KIIFIEHNGTRHEVEAKPGLTVMEAARDNGVPGIDADCGGACACSTCHAYV 52 (106)
T ss_dssp EEEEECTTCCEEEEECCTTSBHHHHHHTTTCTTCCCTTSSSSSSCTTEEEE
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHHHHHcCCCCcccCCCCCCCcCcCEEEE
Confidence 35666799999999999999999987643111 112334788887
No 17
>2y5c_A Adrenodoxin-like protein, mitochondrial; electron transport, iron-sulfur cluster biogenesis; 1.70A {Homo sapiens}
Probab=88.10 E-value=0.68 Score=29.61 Aligned_cols=45 Identities=20% Similarity=0.158 Sum_probs=31.4
Q ss_pred ceEEEEcCCCCeeeEEecCCCcHHHHHHHHHHh-----cC-CCCCceEEEe
Q psy7980 10 ILLRAQLPNQQRTSVHIRKGQTLLEALSKAMKL-----RN-LKPEMCTAYD 54 (93)
Q Consensus 10 ~~irv~LPn~QrT~V~vrpG~tlrdaL~Kalk~-----R~-L~~~~C~Vy~ 54 (93)
+.|.+..|+++...+++.+|.||-||+..+=-. +| =....|.|+.
T Consensus 6 ~~v~~~~~~g~~~~~~~~~g~tlL~aa~~~gi~i~~~C~g~G~CgtC~v~v 56 (109)
T 2y5c_A 6 VNVVFVDRSGQRIPVSGRVGDNVLHLAQRHGVDLEGACEASLACSTCHVYV 56 (109)
T ss_dssp EEEEEECTTSCEEEEEEETTCBHHHHHHHTTCCCCCTTSSSSSCCTTEEEE
T ss_pred EEEEEEcCCCCEEEEEECCCCcHHHHHHHcCCCCCcCCCCCcCcCccEEEE
Confidence 345666799998899999999999987643100 11 2445788887
No 18
>3au4_A Myosin-X; protein-protein complex, motor protein cargo transportation, protein-apoptosis complex; 1.90A {Homo sapiens} PDB: 3au5_A 3pzd_A
Probab=87.83 E-value=1.7 Score=34.73 Aligned_cols=45 Identities=11% Similarity=0.121 Sum_probs=39.8
Q ss_pred ceEEEEcCCCCeeeEEecCCCcHHHHHHHHHHhcCCCC--CceEEEe
Q psy7980 10 ILLRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKP--EMCTAYD 54 (93)
Q Consensus 10 ~~irv~LPn~QrT~V~vrpG~tlrdaL~Kalk~R~L~~--~~C~Vy~ 54 (93)
..++|||||++...+.+.+..|.+|.+...+++-||.. +....|.
T Consensus 217 ~~~~V~l~dg~~~~~~v~~~tt~~el~~~v~~~lgL~e~~~~FgL~~ 263 (555)
T 3au4_A 217 MTSTVYCHGGGSCKITINSHTTAGEVVEKLIRGLAMEDSRNMFALFE 263 (555)
T ss_dssp EEEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTTCTTCCSEEEEEE
T ss_pred cceEEEecCCCeEEEEeCCCCcHHHHHHHHHHHcCCCCCCCceEEEE
Confidence 46999999999999999999999999999999999974 4556665
No 19
>3lxf_A Ferredoxin; iron, iron-sulfur, metal-binding, metal protein; 2.30A {Novosphingobium aromaticivorans} SCOP: d.15.4.0
Probab=87.47 E-value=0.79 Score=29.40 Aligned_cols=44 Identities=20% Similarity=0.216 Sum_probs=32.0
Q ss_pred eEEEEcCCCCeeeEEecCCCcHHHHHHHHHHh------cC-CCCCceEEEe
Q psy7980 11 LLRAQLPNQQRTSVHIRKGQTLLEALSKAMKL------RN-LKPEMCTAYD 54 (93)
Q Consensus 11 ~irv~LPn~QrT~V~vrpG~tlrdaL~Kalk~------R~-L~~~~C~Vy~ 54 (93)
-|.+.-|++++..+++.+|.||.||+..+=-. +| =..-.|.|+.
T Consensus 2 ~vt~~~~~G~~~~~~~~~g~tll~a~~~~gi~~i~~~C~G~G~CgtC~v~v 52 (104)
T 3lxf_A 2 AILVTTRDGTRTEIQAEPGLSLMEALRDAGIDELLALCGGCCSCATCHVLV 52 (104)
T ss_dssp EEEEECTTSCEEEEECCTTSBHHHHHHHTTCTTCCCTTCSSSSCSTTEEEE
T ss_pred EEEEEeCCCCEEEEEECCCChHHHHHHHcCCCCCCcCCCCCCCCCCCEEEE
Confidence 36777899999999999999999998754111 11 1334677887
No 20
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A
Probab=87.13 E-value=0.8 Score=33.82 Aligned_cols=38 Identities=5% Similarity=-0.025 Sum_probs=33.3
Q ss_pred CceEEEEcCCCCeeeEEecCCCcHHHHHHHHHHhcCCCC
Q psy7980 9 GILLRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKP 47 (93)
Q Consensus 9 ~~~irv~LPn~QrT~V~vrpG~tlrdaL~Kalk~R~L~~ 47 (93)
...++|||||++.. +.+.+..|.+|.+.+.+++=||.-
T Consensus 22 ~~~~~V~lldg~~~-~~v~~~t~~~el~~~v~~~l~L~e 59 (314)
T 1h4r_A 22 TFTVRIVTMDAEME-FNCEMKWKGKDLFDLVCRTLGLRE 59 (314)
T ss_dssp EEEEEEECSSCEEE-EEEETTCBHHHHHHHHHHHHTCCC
T ss_pred eeEEEEEeCCceEE-EEeCCCCcHHHHHHHHHHHhCCCC
Confidence 44799999999655 999999999999999999999863
No 21
>1b9r_A Protein (terpredoxin); structure from molmol, ferredoxin; NMR {Pseudomonas SP} SCOP: d.15.4.1
Probab=87.08 E-value=0.52 Score=29.83 Aligned_cols=44 Identities=14% Similarity=0.042 Sum_probs=30.7
Q ss_pred eEEEEcCCCCeeeEEecCCCcHHHHHHHHHHh------cC-CCCCceEEEe
Q psy7980 11 LLRAQLPNQQRTSVHIRKGQTLLEALSKAMKL------RN-LKPEMCTAYD 54 (93)
Q Consensus 11 ~irv~LPn~QrT~V~vrpG~tlrdaL~Kalk~------R~-L~~~~C~Vy~ 54 (93)
.|.+..|++++..+++.+|.||-||+.++=-. +| =..-.|.|+.
T Consensus 2 ~V~~~~~~g~~~~~~~~~g~tlL~aa~~~gi~~i~~~C~g~G~CgtC~v~v 52 (105)
T 1b9r_A 2 RVVFIDEQSGEYAVDAQDGQSLMEVATQNGVPGIVAECGGSCVCATCRIEI 52 (105)
T ss_dssp EEEECCTTTSCEEEECCTTCCTTHHHHHHTCCCCCCSSTTSSCCCCCCCEE
T ss_pred EEEEEeCCCCEEEEEECCCChHHHHHHHcCCCCcCcCCCCCCCcCcCEEEE
Confidence 35555799999999999999999988654211 11 2334678887
No 22
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A
Probab=86.96 E-value=0.62 Score=33.95 Aligned_cols=37 Identities=14% Similarity=0.121 Sum_probs=33.0
Q ss_pred eEEEEcCCCCeeeEEecCCCcHHHHHHHHHHhcCCCCC
Q psy7980 11 LLRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKPE 48 (93)
Q Consensus 11 ~irv~LPn~QrT~V~vrpG~tlrdaL~Kalk~R~L~~~ 48 (93)
.++|||||++.+ +.+.+..|.+|.+.+.+++-||.-.
T Consensus 3 ~~~V~l~d~~~~-~~v~~~tt~~el~~~v~~~l~L~e~ 39 (294)
T 1ef1_A 3 SVRVTTMDAELE-FAIQPNTTGKQLFDQVVKTIGLREV 39 (294)
T ss_dssp EEEEEETTEEEE-EEECTTCBHHHHHHHHHHHHTCCCG
T ss_pred EEEEEECCceEE-EEECCCCcHHHHHHHHHHHcCCCCc
Confidence 589999999765 9999999999999999999998543
No 23
>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A*
Probab=86.90 E-value=0.61 Score=38.04 Aligned_cols=38 Identities=5% Similarity=0.063 Sum_probs=34.4
Q ss_pred eEEEEcCCCC----eeeEEecCCCcHHHHHHHHHHhcCCCCC
Q psy7980 11 LLRAQLPNQQ----RTSVHIRKGQTLLEALSKAMKLRNLKPE 48 (93)
Q Consensus 11 ~irv~LPn~Q----rT~V~vrpG~tlrdaL~Kalk~R~L~~~ 48 (93)
.++|||||+| ...|.+-++.|++|.+.+.+++-||.-.
T Consensus 9 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~v~~~l~i~~~ 50 (656)
T 2j0j_A 9 VFHYFENSSEPTTWASIIRHGDATDVRGIIQKIVDCHKVKNV 50 (656)
T ss_dssp EECCCCCSSCGGGCEEEEEECTTCBHHHHHHHHHHHTTCSCG
T ss_pred heEEeccCCCCCCceeEEEeCCCCcHHHHHHHHHHhcCccee
Confidence 5889999999 9999999999999999999999888433
No 24
>2wlb_A ETP1-FD, electron transfer protein 1, mitochondrial; iron-sulfur, iron, transport, ferredoxin, adrenodoxin-like, electron transport; 2.60A {Schizosaccharomyces pombe}
Probab=86.83 E-value=1.1 Score=28.13 Aligned_cols=40 Identities=13% Similarity=0.209 Sum_probs=30.8
Q ss_pred eEEEEcCCCCeeeEEecCCCcHHHHHHHHHHhcCC----------CCCceEEEe
Q psy7980 11 LLRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNL----------KPEMCTAYD 54 (93)
Q Consensus 11 ~irv~LPn~QrT~V~vrpG~tlrdaL~Kalk~R~L----------~~~~C~Vy~ 54 (93)
.|.+.-||++...+++.+|.||-||+..+ |+ ....|.|+.
T Consensus 5 ~v~~~~~~g~~~~~~~~~g~tlL~a~~~~----gi~i~~~C~g~G~Cg~C~v~v 54 (103)
T 2wlb_A 5 KVFFVTPEGREIMIEGNEGDSILDLAHAN----NIDLEGACEGSVACSTCHVIV 54 (103)
T ss_dssp EEEEECTTCCEEEEEECTTCBHHHHHHHT----TCCCCCTTTTSSCCSTTEEEE
T ss_pred EEEEEeCCCCEEEEEECCCCHHHHHHHHc----CCCcCcCCCCCCCcCCCEEEE
Confidence 45555599999999999999999998754 43 344688887
No 25
>4gmv_A RAS-associated and pleckstrin homology domains-CO protein 1; RA-PH, coiled-coil region, RAS-association domain, pleckstri homology domain; 2.40A {Homo sapiens} PDB: 4gn1_A
Probab=86.43 E-value=1.2 Score=33.90 Aligned_cols=46 Identities=11% Similarity=0.225 Sum_probs=36.6
Q ss_pred CceEEEEcCCCCeeeEEecCCCcHHHHHHHHHHhcCCC-CCceEEEe
Q psy7980 9 GILLRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLK-PEMCTAYD 54 (93)
Q Consensus 9 ~~~irv~LPn~QrT~V~vrpG~tlrdaL~Kalk~R~L~-~~~C~Vy~ 54 (93)
+-+|+||+.++...+|.|-|++|.+|.+.....+-++. .+..++|-
T Consensus 31 k~ivkv~~~D~ss~~l~V~~~~TA~dv~~~L~~k~~~~~~~~W~L~E 77 (281)
T 4gmv_A 31 KLVIRVHMSDDSSKTMMVDERQTVRQVLDNLMDKSHCGYSLDWSLVE 77 (281)
T ss_dssp EEEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHSCCCCCTTCEEEE
T ss_pred cEEEEEEecCCCEEEEEECCCCcHHHHHHHHHHhcCCCCCCCeEEEE
Confidence 55899999999999999999999999998776666664 33444444
No 26
>3tca_A Amyloid beta A4 precursor protein-binding family 1-interacting protein; RA domain, RBD, PH domain; 2.35A {Mus musculus}
Probab=86.39 E-value=1.3 Score=31.58 Aligned_cols=40 Identities=8% Similarity=0.193 Sum_probs=35.8
Q ss_pred CceEEEEcCCCCeeeEEecCCCcHHHHHHHHHHhcCCCCC
Q psy7980 9 GILLRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKPE 48 (93)
Q Consensus 9 ~~~irv~LPn~QrT~V~vrpG~tlrdaL~Kalk~R~L~~~ 48 (93)
+.+|+||.++++.-.+.|-+++|..|.+....++.++..+
T Consensus 34 k~~v~v~~~d~~~k~i~v~~~~ta~ev~~~L~~k~~~~~~ 73 (291)
T 3tca_A 34 KLVVKVHMDDSSTKSLMVDERQLARDVLDNLFEKTHCDCN 73 (291)
T ss_dssp EEEEEEECTTSCEEEEEEETTCBHHHHHHHHHHHHCCCCC
T ss_pred ceEEEEEcCCCceEEEEeCCCCcHHHHHHHHHHHhCCCCC
Confidence 5579999999999999999999999999998888887554
No 27
>3hk0_A Growth factor receptor-bound protein 10; GRB10, RA, PH, RAS-associating, pleckstrin-homology, adapter phosphoprotein, SH2 domain; 2.60A {Homo sapiens}
Probab=86.39 E-value=0.86 Score=34.26 Aligned_cols=42 Identities=7% Similarity=-0.084 Sum_probs=32.8
Q ss_pred CCCceEEEEcCCCCeeeEEecCCCcHHHHHHHHHHhcCCCCC
Q psy7980 7 PRGILLRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKPE 48 (93)
Q Consensus 7 p~~~~irv~LPn~QrT~V~vrpG~tlrdaL~Kalk~R~L~~~ 48 (93)
+.+-+|+||+.++-..+|.|-++||.+|.+.-++.+++...+
T Consensus 6 ~~~~ivkv~~~d~ss~~l~V~~~mta~ev~~~l~~k~~~~~~ 47 (256)
T 3hk0_A 6 AAKQDVKVFSEDGTSKVVEILADMTARDLCQLLVYKSHSVDD 47 (256)
T ss_dssp --CEEEEEEETTSCEEEEEECTTCBHHHHHHHHHCCC-----
T ss_pred CCceEEEEEecCCcEEEEEECCCCCHHHHHHHHHHhcCCCCC
Confidence 456789999999999999999999999999988887776433
No 28
>2al6_A Focal adhesion kinase 1; transferase; 2.35A {Gallus gallus} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 2j0m_A* 2aeh_A
Probab=85.33 E-value=0.78 Score=35.25 Aligned_cols=44 Identities=5% Similarity=-0.010 Sum_probs=37.2
Q ss_pred eEEEEcCCCC----eeeEEecCCCcHHHHHHHHHHhcCCC-CCceEEEe
Q psy7980 11 LLRAQLPNQQ----RTSVHIRKGQTLLEALSKAMKLRNLK-PEMCTAYD 54 (93)
Q Consensus 11 ~irv~LPn~Q----rT~V~vrpG~tlrdaL~Kalk~R~L~-~~~C~Vy~ 54 (93)
.++|||||+| .-.+.+-+..|.+|.+..++++=||. .+.-+.+.
T Consensus 9 ~l~V~l~~g~~~~~~~~~~~~~~tt~~dl~~~v~~~lgL~~~~~FgL~~ 57 (375)
T 2al6_A 9 VFHYFENSSEPTTWASIIRHGDATDVRGIIQKIVDCHKVKNVACYGLRL 57 (375)
T ss_dssp EECCCCCSSCGGGCEEEEEECTTCBHHHHHHHHHHHTTCSCGGGEEEEE
T ss_pred eEEEEecCCCCCCceEEEEeCCCCCHHHHHHHHHHHcCCCeEeEEEEEE
Confidence 5889999999 89999999999999999999999983 23445554
No 29
>2bs2_B Quinol-fumarate reductase iron-sulfur subunit B; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.1.2.1 d.15.4.2 PDB: 2bs3_B* 1e7p_B* 1qlb_B* 2bs4_B*
Probab=84.99 E-value=2.7 Score=30.02 Aligned_cols=68 Identities=12% Similarity=-0.003 Sum_probs=43.2
Q ss_pred CeeeEEecCCCcHHHHHHHHHH--------hcCC---CCCceEEEeCCCCcccccCCCCCCcCCceeEEEeecccccccc
Q psy7980 20 QRTSVHIRKGQTLLEALSKAMK--------LRNL---KPEMCTAYDSNTGVSLQWDTDSDHLPTTEIRVEVMEGNLALSS 88 (93)
Q Consensus 20 QrT~V~vrpG~tlrdaL~Kalk--------~R~L---~~~~C~Vy~~~~~~~i~wdtD~~~L~~eEl~Ve~ld~~p~~~h 88 (93)
|.-.|++.+|+||-|||.++=. +++. ..-.|.|-..|. ..+.=.+-+..+.|+++.||-+.++|.+.-
T Consensus 24 ~~~~v~~~~~~tlL~~l~~~~~~~~~~l~~~~~c~~g~Cg~C~v~i~G~-~~~aC~~~~~~~~g~~~~ie~l~~~pvikD 102 (241)
T 2bs2_B 24 QEYKIEEAPSMTIFIVLNMIRETYDPDLNFDFVCRAGICGSCGMMINGR-PSLACRTLTKDFEDGVITLLPLPAFKLIKD 102 (241)
T ss_dssp EEEEEECCTTCBHHHHHHHHHHHTCTTCCCCCSSSSSSSCTTEEEETTE-EEEGGGCBGGGCTTSEEEEECCTTSEEEET
T ss_pred EEEEEeCCCCChHHHHHHHhchhcCCCCccCCCCCCCCCCCCEeEECCC-eecchhCcHhHcCCCeEEEecCCCCCccee
Confidence 5677899999999999987521 1122 123577777432 223333333344467799999999996653
No 30
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=83.34 E-value=6.1 Score=24.48 Aligned_cols=71 Identities=18% Similarity=0.246 Sum_probs=52.6
Q ss_pred CceEEEEc-----CCCCeeeEEecCCCcHHHHHHHHHHhcCCCCCceEE-EeCC--CCcccccCCCCCCcC------Cce
Q psy7980 9 GILLRAQL-----PNQQRTSVHIRKGQTLLEALSKAMKLRNLKPEMCTA-YDSN--TGVSLQWDTDSDHLP------TTE 74 (93)
Q Consensus 9 ~~~irv~L-----Pn~QrT~V~vrpG~tlrdaL~Kalk~R~L~~~~C~V-y~~~--~~~~i~wdtD~~~L~------~eE 74 (93)
..++++++ .+++...+.+-+.+|+.+-=.|.-+.=|+++..=.+ |..+ ....++++.|...|+ |..
T Consensus 7 ~~~v~l~I~~~~~~~~~~~e~~l~~~~TV~~LK~~i~~~~gip~~~q~L~~~~~~~~~~~~~L~~d~~~L~~y~i~~G~~ 86 (97)
T 1wjn_A 7 GQLLTLKIKCSNQPERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQPLQFYSVENGDC 86 (97)
T ss_dssp SCEEEEEEEESSCSSSCCEEEEEETTSBHHHHHHHHHTTTTCCTTTCEEEEECTTSCSCEEECCCSSSBSGGGTCCTTCE
T ss_pred CccEEEEEEecCCCCCcEEEEECCCCCCHHHHHHHHHHHHCCChhHeEEEEEcCCCCceeeccCCCcccHhhcCCCCCCE
Confidence 34555533 478888899999999999999999999998884444 4432 334677899988884 778
Q ss_pred eEEEe
Q psy7980 75 IRVEV 79 (93)
Q Consensus 75 l~Ve~ 79 (93)
|+|+.
T Consensus 87 I~V~d 91 (97)
T 1wjn_A 87 LLVRW 91 (97)
T ss_dssp EEEEC
T ss_pred EEEEe
Confidence 87765
No 31
>3hui_A Ferredoxin; cytochrome P450, electron transfer, iron, iron-sulfur, metal-binding, electron transport; 2.01A {Rhodopseudomonas palustris}
Probab=83.19 E-value=1.3 Score=29.73 Aligned_cols=29 Identities=17% Similarity=0.252 Sum_probs=23.6
Q ss_pred eEEEEcCCCCeeeEEecCCCcHHHHHHHH
Q psy7980 11 LLRAQLPNQQRTSVHIRKGQTLLEALSKA 39 (93)
Q Consensus 11 ~irv~LPn~QrT~V~vrpG~tlrdaL~Ka 39 (93)
.|.+.-|++++..+++.+|.||.||+..+
T Consensus 23 ~Vt~~~~~G~~~~v~~~~G~tLL~aa~~~ 51 (126)
T 3hui_A 23 KINFVDHTGETRTVEVEEGATVMEAAIRN 51 (126)
T ss_dssp EEEEECTTSCEEEEEEETTSBHHHHHHTT
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHHHHHc
Confidence 35555599999999999999999987654
No 32
>1frr_A Ferredoxin I; electron transfer(iron-sulfur protein); 1.80A {Equisetum arvense} SCOP: d.15.4.1
Probab=82.47 E-value=1.2 Score=27.40 Aligned_cols=38 Identities=18% Similarity=0.303 Sum_probs=28.7
Q ss_pred EEEEcCCCCeeeEEecCCCcHHHHHHHHHHhcCCC---------CCceEEEe
Q psy7980 12 LRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLK---------PEMCTAYD 54 (93)
Q Consensus 12 irv~LPn~QrT~V~vrpG~tlrdaL~Kalk~R~L~---------~~~C~Vy~ 54 (93)
|.+..||+ ...+++.+|.||-||+.++ |+. ...|.|..
T Consensus 4 v~~~~~~g-~~~~~~~~g~tlL~a~~~~----gi~i~~~C~~G~Cg~C~v~v 50 (95)
T 1frr_A 4 TVLKTPSG-EFTLDVPEGTTILDAAEEA----GYDLPFSCRAGACSSCLGKV 50 (95)
T ss_dssp EEEEETTE-EEEEEECTTCCHHHHHHHT----TCCCCCSSSSSSSSTTEEEE
T ss_pred EEEEeCCC-cEEEEeCCCCcHHHHHHHc----CCCCCCCCCCcCCCCCEEEE
Confidence 55556998 6789999999999998754 553 33677776
No 33
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=81.98 E-value=1.6 Score=35.97 Aligned_cols=40 Identities=15% Similarity=0.235 Sum_probs=34.3
Q ss_pred CCCceEEEEcCCCCeeeEEecCCCcHHHHHHHHHHhcCCCC
Q psy7980 7 PRGILLRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKP 47 (93)
Q Consensus 7 p~~~~irv~LPn~QrT~V~vrpG~tlrdaL~Kalk~R~L~~ 47 (93)
|+...++|||||++.+ +.+.+..|.+|.+...+++=||.-
T Consensus 2 ~k~i~v~V~llDgt~e-~~vd~~tt~~ell~~V~~~LgL~e 41 (575)
T 2i1j_A 2 PKSMNVRVTTMDAELE-FAIQQTTTGKQLFDQVVKTIGLRE 41 (575)
T ss_dssp -CEEEEEEECSSCEEE-EEEETTCBHHHHHHHHHHHHTCCC
T ss_pred CceEEEEEEeCCCeEE-EEECCCCCHHHHHHHHHHHcCCCC
Confidence 4556899999999654 999999999999999999999953
No 34
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=81.80 E-value=2.5 Score=24.60 Aligned_cols=27 Identities=15% Similarity=0.131 Sum_probs=21.3
Q ss_pred eEEEEcCCCCeeeEEecCCCcHHHHHHHH
Q psy7980 11 LLRAQLPNQQRTSVHIRKGQTLLEALSKA 39 (93)
Q Consensus 11 ~irv~LPn~QrT~V~vrpG~tlrdaL~Ka 39 (93)
.+.|++|||+. .++..|.|+.|.+.+.
T Consensus 2 ~i~i~~p~g~~--~~~~~g~T~~dla~~i 28 (73)
T 2kmm_A 2 EVMVFTPKGEI--KRLPQGATALDFAYSL 28 (73)
T ss_dssp CEEEECTTCCE--EEECTTCBHHHHHHHH
T ss_pred eEEEEcCCCCE--EEcCCCCcHHHHHHHH
Confidence 47899999864 6777899999976543
No 35
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=81.13 E-value=4.3 Score=25.00 Aligned_cols=68 Identities=16% Similarity=0.146 Sum_probs=49.1
Q ss_pred ceEEEEcCCCCeeeEEecCCCcHHHHHHHHHHhcCCCCCceEEEeCCC-CcccccCCC--CCCc---CCceeEEE
Q psy7980 10 ILLRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKPEMCTAYDSNT-GVSLQWDTD--SDHL---PTTEIRVE 78 (93)
Q Consensus 10 ~~irv~LPn~QrT~V~vrpG~tlrdaL~Kalk~R~L~~~~C~Vy~~~~-~~~i~wdtD--~~~L---~~eEl~Ve 78 (93)
..||+-=|+||+. |++-+.-|+.|-+.|..+.-++..+.=.+|.+.. +..++-+.+ +..| .|+-|.|+
T Consensus 5 m~lRvrs~~G~~R-i~v~~~~t~~~L~~~I~~~~~i~~~~~~l~~~~~p~~~l~~~~~~~l~~lgl~hGd~l~l~ 78 (80)
T 2pjh_A 5 IIIRVQSPDGVKR-ITATKRETAATFLKKVAKEFGFQNNGFSVYINRNKTGEITASSSKSLHLLKIKHGDLLFLF 78 (80)
T ss_dssp CCCEEECSSEEEE-CCCCSSCCHHHHHHHHHHHTCCCTTTCCCCCSCCGGGGSSSCCCCTTTTTCCCTTCCEEC-
T ss_pred EEEEEECCCCCEE-EEcCCcChHHHHHHHHHHHcCCCCCcceEEecCCCCCcccCCCCCCHHHcCCCCCCEEEEe
Confidence 5799999999877 6799999999999999999999877767777533 245544322 2222 47766654
No 36
>2wdq_B Succinate dehydrogenase iron-sulfur subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_B* 2acz_B* 1nek_B* 2wdr_B* 2wdv_B* 2ws3_B* 2wu2_B* 2wu5_B* 2wp9_B*
Probab=80.74 E-value=2.6 Score=29.93 Aligned_cols=67 Identities=16% Similarity=0.112 Sum_probs=42.9
Q ss_pred CeeeEEecC--CCcHHHHHHHHHHhcC-C----CCC-----ceEEEeCCCCcccccCCCCCC--cCCceeEEEeeccccc
Q psy7980 20 QRTSVHIRK--GQTLLEALSKAMKLRN-L----KPE-----MCTAYDSNTGVSLQWDTDSDH--LPTTEIRVEVMEGNLA 85 (93)
Q Consensus 20 QrT~V~vrp--G~tlrdaL~Kalk~R~-L----~~~-----~C~Vy~~~~~~~i~wdtD~~~--L~~eEl~Ve~ld~~p~ 85 (93)
|.-.|++.+ |+||-|||.++...-+ | ... .|.|-..|.. .++=.+-+.. +.|.++.+|-|.++|.
T Consensus 21 ~~~~v~~~~~~~~tll~~l~~~~~~~~~l~~~~~C~~g~Cg~C~v~v~G~~-~laC~~~~~~~g~~~~~~~ie~l~~~pv 99 (238)
T 2wdq_B 21 QDYTLEADEGRDMMLLDALIQLKEKDPSLSFRRSCREGVCGSDGLNMNGKN-GLACITPISALNQPGKKIVIRPLPGLPV 99 (238)
T ss_dssp EEEEEECCTTCCCBHHHHHHHHHHHCTTCCCCCSSSSSSSCTTEEEETTEE-EEGGGCBGGGTCCTTSCEEEECCTTSBE
T ss_pred EEEEeecCCCCCChHHHHHHHhcccCCCccccccCCCCCCCCCEEEECCEE-EcccccchhhhccCCCCEEEeeCCCCcc
Confidence 566789999 9999999999873311 1 122 7888875432 2333333333 3345689998888886
Q ss_pred cc
Q psy7980 86 LS 87 (93)
Q Consensus 86 ~~ 87 (93)
+.
T Consensus 100 i~ 101 (238)
T 2wdq_B 100 IR 101 (238)
T ss_dssp EE
T ss_pred hh
Confidence 43
No 37
>1awd_A Ferredoxin; electron transport, eukaryotic, green ALGA, electron transfer, metalloprotein; 1.40A {'chlorella' fusca} SCOP: d.15.4.1
Probab=80.02 E-value=1.6 Score=27.08 Aligned_cols=38 Identities=16% Similarity=0.295 Sum_probs=28.4
Q ss_pred EEEEcCCCCeeeEEecCCCcHHHHHHHHHHhcCCC---------CCceEEEe
Q psy7980 12 LRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLK---------PEMCTAYD 54 (93)
Q Consensus 12 irv~LPn~QrT~V~vrpG~tlrdaL~Kalk~R~L~---------~~~C~Vy~ 54 (93)
|.+..|++ ...+++.+|.||-||+.++ |+. ...|.|+.
T Consensus 3 v~~~~~~g-~~~~~~~~g~tlL~a~~~~----gi~i~~~C~~G~Cg~C~v~v 49 (94)
T 1awd_A 3 VTLKTPSG-EETIECPEDTYILDAAEEA----GLDLPYSCRAGACSSCAGKV 49 (94)
T ss_dssp EEEEETTE-EEEEECCTTSCHHHHHHHT----TCCCCCSSSSSSSSTTEEEE
T ss_pred EEEEeCCC-cEEEEECCCCcHHHHHHHc----CCCCCcCCCCCcCCCCEEEE
Confidence 55667888 6679999999999998764 543 33677876
No 38
>2h88_B Succinate dehydrogenase IP subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_B* 1yq3_B* 2fbw_B* 2h89_B* 2wqy_B* 3aef_B* 3abv_B* 3ae1_B* 3ae3_B* 3ae2_B* 3ae5_B* 3ae6_B* 3ae7_B* 3ae8_B* 3ae9_B* 3aea_B* 3aeb_B* 3aec_B* 3aed_B* 3aee_B* ...
Probab=79.36 E-value=4.5 Score=29.29 Aligned_cols=67 Identities=18% Similarity=0.167 Sum_probs=45.1
Q ss_pred CeeeEEecC-CCcHHHHHHHHHHhcC--C---------CCCceEEEeCCCCcccccCCCCCCcCCceeEEEeeccccccc
Q psy7980 20 QRTSVHIRK-GQTLLEALSKAMKLRN--L---------KPEMCTAYDSNTGVSLQWDTDSDHLPTTEIRVEVMEGNLALS 87 (93)
Q Consensus 20 QrT~V~vrp-G~tlrdaL~Kalk~R~--L---------~~~~C~Vy~~~~~~~i~wdtD~~~L~~eEl~Ve~ld~~p~~~ 87 (93)
|.-.|++.+ |+||-|||.++-.... | ..-.|.|-..|. ..+.=.+-+..+.|+++.+|-|.++|.+.
T Consensus 31 ~~~~v~~~~~~~tlLd~l~~~~~~~~p~l~~~~~c~~g~Cg~C~v~i~G~-~~~aC~~~~~~~~g~~~~iepl~~~pvik 109 (252)
T 2h88_B 31 QTYEVDLNKCGPMVLDALIKIKNELDSTLTFRRSCREGICGSCAMNIAGG-NTLACTKKIDPDLSKTTKIYPLPHMYVVK 109 (252)
T ss_dssp EEEEEEGGGSCSBHHHHHHHHHHHTCTTCCCCCSCSSSSSCTTEEEETTE-EEEGGGSBCCCCTTSCEEEECSTTCBEEE
T ss_pred EEEEEecCCCCChHHHHHHHhCcccCCCccccCCCCCCCCCCCEEEECCc-EEccccCCHhHcCCCceEEecccCCCccc
Confidence 556788888 9999999999763211 1 123577776543 23444444555567789999999999654
No 39
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=78.36 E-value=3.2 Score=28.50 Aligned_cols=38 Identities=8% Similarity=0.153 Sum_probs=36.1
Q ss_pred eEEEEcCCCCeeeEEecCCCcHHHHHHHHHHhcCCCCC
Q psy7980 11 LLRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKPE 48 (93)
Q Consensus 11 ~irv~LPn~QrT~V~vrpG~tlrdaL~Kalk~R~L~~~ 48 (93)
.++|-|||++.-.+.|-.++++-++..-++++=|++..
T Consensus 13 ~LkV~llDg~~ktl~VD~S~~V~~lv~~Ic~kigI~n~ 50 (128)
T 2kc2_A 13 PLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNH 50 (128)
T ss_dssp EEEEECTTSCEEEEEEEECSSHHHHHHHHHHHHTCCCC
T ss_pred cEEEEcCCCCEEEEEeCCCcCHHHHHHHHHHHhCCCCc
Confidence 69999999999999999999999999999999999755
No 40
>2c5l_C Phosphoinositide-specific phospholipase C PLC-epsilon; signaling protein/complex, RAS, ubiquitin superfold, oncogene, GTP-binding; HET: GTP; 1.9A {Homo sapiens} SCOP: d.15.1.5 PDB: 2byf_A
Probab=77.84 E-value=4.7 Score=27.48 Aligned_cols=36 Identities=14% Similarity=0.271 Sum_probs=33.2
Q ss_pred eEEEE--cCCCCeeeEEecCCCcHHHHHHHHHHhcCCC
Q psy7980 11 LLRAQ--LPNQQRTSVHIRKGQTLLEALSKAMKLRNLK 46 (93)
Q Consensus 11 ~irv~--LPn~QrT~V~vrpG~tlrdaL~Kalk~R~L~ 46 (93)
+++|| .|++-.|++.|-.+-|.+|.|.-||.+.|++
T Consensus 9 ~v~V~~v~p~~py~iv~vt~~STAqdvI~eaL~kag~~ 46 (117)
T 2c5l_C 9 FVQVHDVSPEQPRTVIKAPRVSTAQDVIQQTLCKAKYS 46 (117)
T ss_dssp EEEEESCCSSCCEEEEEEETTCBHHHHHHHHHHHTTTS
T ss_pred EEEEecCCCCCCeEEEEeCCCCcHHHHHHHHHHHcCCc
Confidence 57777 7999999999999999999999999998876
No 41
>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein cargo binding, cargo proteins, motor protein-protein transport complex; 2.80A {Mus musculus}
Probab=77.82 E-value=3.6 Score=34.42 Aligned_cols=46 Identities=15% Similarity=0.062 Sum_probs=39.0
Q ss_pred CceEEEEcCCCCeeeEEecCCCcHHHHHHHHHHhcCCCC-CceEEEe
Q psy7980 9 GILLRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKP-EMCTAYD 54 (93)
Q Consensus 9 ~~~irv~LPn~QrT~V~vrpG~tlrdaL~Kalk~R~L~~-~~C~Vy~ 54 (93)
...++|||||++.-.+.+.+..|.+|.+...+++-||.- +--..|.
T Consensus 263 ~i~~~V~llDgt~~~~~vds~Tt~~ell~~V~~~LgL~e~~~FgL~~ 309 (655)
T 3pvl_A 263 PIMLPVTFMDGTTKTLLTDSATTARELCNALADKISLKDRFGFSLYI 309 (655)
T ss_dssp CEEEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTTCSSCTTEEEEE
T ss_pred ceEEEEEecCCceEEEEEccCCcHHHHHHHHHHHcCCcccccceeEE
Confidence 346999999999999999999999999999999999854 3444444
No 42
>1wgy_A RAP guanine nucleotide exchange factor 5; ubiquitin fold, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=76.81 E-value=14 Score=24.63 Aligned_cols=76 Identities=16% Similarity=0.052 Sum_probs=51.1
Q ss_pred CCceEEEEcCCCCeeeEEecCCCcHHHHHHHHHHhcCCCC-CceEEEe--CCCCcccccCCCCCC---cC-CceeEEEee
Q psy7980 8 RGILLRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKP-EMCTAYD--SNTGVSLQWDTDSDH---LP-TTEIRVEVM 80 (93)
Q Consensus 8 ~~~~irv~LPn~QrT~V~vrpG~tlrdaL~Kalk~R~L~~-~~C~Vy~--~~~~~~i~wdtD~~~---L~-~eEl~Ve~l 80 (93)
.+.+++||.|+....++.++...|.++-+.-+-++=++.- +...|-. .|.+..+. ..|.+. |. -+.|+|-.-
T Consensus 8 D~i~~~Vy~~Dhsy~tvr~~v~~sa~eIl~~va~kl~~~~e~l~Lv~v~ssGEk~~lq-p~d~si~tsL~~NgRLfvc~k 86 (104)
T 1wgy_A 8 EEIFCHVYITEHSYVSVKAKVSSIAQEILKVVAEKIQYAEEDLALVAITFSGEKHELQ-PNDLVISKSLEASGRIYVYRK 86 (104)
T ss_dssp SCCCEEEECSSSCEEEECCCTTCBSHHHHHHHHHHHTSCGGGEEEEEECSSCCCCBCC-TTSBSSCCSSCSSCEEEEEEC
T ss_pred CceEEEEEeccCceEEEEEeccchHHHHHHHHHHHhcCCccceEEEEEccCCcEeecC-CcceEEEeeccccceEEEeeh
Confidence 4779999999999999999999999888887777777765 4555544 34443333 344333 32 456676544
Q ss_pred cccc
Q psy7980 81 EGNL 84 (93)
Q Consensus 81 d~~p 84 (93)
|.+.
T Consensus 87 d~~d 90 (104)
T 1wgy_A 87 DLAD 90 (104)
T ss_dssp CSSS
T ss_pred Hhcc
Confidence 4443
No 43
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=76.55 E-value=10 Score=23.06 Aligned_cols=48 Identities=15% Similarity=0.255 Sum_probs=34.6
Q ss_pred eeeEEecCCCcHHHHHHHHHHhcCCCCCceEEEeCCCCcccccCCCCCCcCCceeEE
Q psy7980 21 RTSVHIRKGQTLLEALSKAMKLRNLKPEMCTAYDSNTGVSLQWDTDSDHLPTTEIRV 77 (93)
Q Consensus 21 rT~V~vrpG~tlrdaL~Kalk~R~L~~~~C~Vy~~~~~~~i~wdtD~~~L~~eEl~V 77 (93)
...+++.+|.|++|-| +.-||+++.++|.+.+. .++.|+ .+.|++|.+
T Consensus 12 ~~~~ev~~g~Tv~dLL----~~Lgl~~~~VvV~vNG~--~v~~d~---~l~GD~VeI 59 (74)
T 2l32_A 12 TSEVAVDDDGTYADLV----RAVDLSPHEVTVLVDGR--PVPEDQ---SVEVDRVKV 59 (74)
T ss_dssp EEEEECSTTCSHHHHH----HTTCCCSSCCCEECCCC--CCCTTS---SSCCCCEEE
T ss_pred ceeEEcCCCCcHHHHH----HHcCCCcceEEEEECCE--ECCHHH---CCCCCEEEE
Confidence 3457899999998875 47799999998887543 556666 456776643
No 44
>2dhz_A RAP guanine nucleotide exchange factor (GEF)- like 1; LINK guanine nucleotide exchange factor II, LINK-gefii, RA domain, structural genomics; NMR {Homo sapiens}
Probab=76.19 E-value=10 Score=25.88 Aligned_cols=39 Identities=13% Similarity=0.258 Sum_probs=34.7
Q ss_pred CceEEEEcCCCCeeeEEecCCCcHHHHHHHHHHhcCCCC
Q psy7980 9 GILLRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKP 47 (93)
Q Consensus 9 ~~~irv~LPn~QrT~V~vrpG~tlrdaL~Kalk~R~L~~ 47 (93)
+.++|||.|+....++.++...|.++-+.-+-++=+..-
T Consensus 9 ei~~~VY~~Dhsy~tvr~~v~~sa~eIl~~va~kl~~~e 47 (120)
T 2dhz_A 9 EIFCRVYMPDHSYVTIRSRLSASVQDILGSVTEKLQYSE 47 (120)
T ss_dssp CEEECEECTTSCCCCEEECTTCCHHHHHHHHHHHSTTCS
T ss_pred cEEEEEEeccCceEEEEEeccccHHHHHHHHHHHhcccc
Confidence 678999999999999999999999999988888877744
No 45
>1wri_A Ferredoxin II, ferredoxin; electron transport; 1.20A {Equisetum arvense} SCOP: d.15.4.1
Probab=76.12 E-value=3.2 Score=25.61 Aligned_cols=40 Identities=15% Similarity=0.277 Sum_probs=29.4
Q ss_pred eEEEEcCCCCeeeEEecCCCcHHHHHHHHHHhcCC-------CCCceEEEe
Q psy7980 11 LLRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNL-------KPEMCTAYD 54 (93)
Q Consensus 11 ~irv~LPn~QrT~V~vrpG~tlrdaL~Kalk~R~L-------~~~~C~Vy~ 54 (93)
.|.+..|++ ...+++.+|.||-|++..+= .+ ....|.|+.
T Consensus 3 ~V~~~~~~~-~~~~~~~~g~tlL~a~~~~g---~i~~~C~~G~Cg~C~v~v 49 (93)
T 1wri_A 3 KVTLKTPDG-DITFDVEPGERLIDIGSEKA---DLPLSCQAGACSTCLGKI 49 (93)
T ss_dssp EEEEEETTE-EEEEEECTTSCHHHHHHHHS---CCCCSSSSSSSSTTEEEE
T ss_pred EEEEEECCC-eEEEEECCCCcHHHHHHHCc---CCCCCCCCCCCCCCEEEE
Confidence 355666887 67899999999999998762 33 233688886
No 46
>1l5p_A Ferredoxin; [2Fe-2S] cluster, electron transfer, iron-sulfur protein, metalloprotein, oxidoreductase; 2.20A {Trichomonas vaginalis} SCOP: d.15.4.1
Probab=74.82 E-value=1.7 Score=26.98 Aligned_cols=27 Identities=19% Similarity=0.362 Sum_probs=22.3
Q ss_pred EEEEcCCCCeeeEEecCCCcHHHHHHHH
Q psy7980 12 LRAQLPNQQRTSVHIRKGQTLLEALSKA 39 (93)
Q Consensus 12 irv~LPn~QrT~V~vrpG~tlrdaL~Ka 39 (93)
|. +.+|++...+++.+|.||-|++.++
T Consensus 3 v~-i~~~g~~~~~~~~~g~tll~a~~~~ 29 (93)
T 1l5p_A 3 IT-AVKGGVKKQLKFEDDQTLFTVLTEA 29 (93)
T ss_dssp EE-EEETTEEEEEECCTTEEHHHHHHTT
T ss_pred EE-EEeCCcEEEEEECCCChHHHHHHHc
Confidence 44 4678988999999999999997654
No 47
>1a70_A Ferredoxin; iron-sulfur protein, photosynthesis, electron transport; 1.70A {Spinacia oleracea} SCOP: d.15.4.1 PDB: 1pfd_A
Probab=74.63 E-value=2.7 Score=26.15 Aligned_cols=39 Identities=10% Similarity=0.153 Sum_probs=28.9
Q ss_pred eEEEEcCCCCeeeEEecCCCcHHHHHHHHHHhcCCC---------CCceEEEe
Q psy7980 11 LLRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLK---------PEMCTAYD 54 (93)
Q Consensus 11 ~irv~LPn~QrT~V~vrpG~tlrdaL~Kalk~R~L~---------~~~C~Vy~ 54 (93)
.|.+..|++ ...+++.+|.||-||+..+ |+. ...|.|+.
T Consensus 4 ~v~~~~~~~-~~~~~~~~g~tlL~a~~~~----gi~i~~~C~~G~Cg~C~v~v 51 (97)
T 1a70_A 4 KVTLVTPTG-NVEFQCPDDVYILDAAEEE----GIDLPYSCRAGSCSSCAGKL 51 (97)
T ss_dssp EEEEEETTE-EEEEEEETTSCHHHHHHHT----TCCCCCSSSSSCSSTTEEEE
T ss_pred EEEEEeCCc-eEEEEeCCCCcHHHHHHHc----CCCcccCCCCcCCCCCeEEE
Confidence 356666887 6789999999999998764 543 33688876
No 48
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=73.17 E-value=15 Score=23.14 Aligned_cols=69 Identities=12% Similarity=0.056 Sum_probs=48.9
Q ss_pred CCceEEEEcCCCCeeeEEecCCCcHHHHHHHHHHhcCCCCCceEEEeCCCCcccccCCCCCCc---CCceeEEE
Q psy7980 8 RGILLRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKPEMCTAYDSNTGVSLQWDTDSDHL---PTTEIRVE 78 (93)
Q Consensus 8 ~~~~irv~LPn~QrT~V~vrpG~tlrdaL~Kalk~R~L~~~~C~Vy~~~~~~~i~wdtD~~~L---~~eEl~Ve 78 (93)
.+..|+|--+++....+.|++..++..-..+-.++.|++++....+-.|. +|.=+.-...| .|..|.|-
T Consensus 4 ~~i~ikVk~~~g~~v~~~vk~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~--~l~~~~Tp~dl~medgD~Idv~ 75 (91)
T 2io0_B 4 DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQ--PINETDTPAQLEMEDEDTIDVF 75 (91)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHTTCCSTTEEEEETTE--ECCTTCCTTTTTCCTTEEEEEE
T ss_pred CeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCE--EcCCCCCHHHcCCCCCCEEEEE
Confidence 35578888899988999999999999999999999999998665444322 23333333333 36666553
No 49
>2dcl_A Hypothetical UPF0166 protein PH1503; hexamer, structural genomics, NPPSFA, national project on PR structural and functional analyses; HET: AMP; 2.28A {Pyrococcus horikoshii}
Probab=72.72 E-value=10 Score=25.71 Aligned_cols=64 Identities=20% Similarity=0.280 Sum_probs=40.3
Q ss_pred eEEEEcCCCCeeeEEecCCCcHHHHHHHHHHhcCCCCCceEEEeC----CCCcccccCCCCCCcC-CceeEEEeecc
Q psy7980 11 LLRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKPEMCTAYDS----NTGVSLQWDTDSDHLP-TTEIRVEVMEG 82 (93)
Q Consensus 11 ~irv~LPn~QrT~V~vrpG~tlrdaL~Kalk~R~L~~~~C~Vy~~----~~~~~i~wdtD~~~L~-~eEl~Ve~ld~ 82 (93)
.+|+|+-.+.+. .|..|+++|...++..|+ .-..||++ +.. ..-+..++-.|+ +.-+.||+.|.
T Consensus 11 ~LrIy~~E~d~~-----~g~pL~~~Iv~~a~~~Gi--aGaTV~rgi~GfG~~-g~ih~~~~l~ls~dlPVvIe~Vd~ 79 (127)
T 2dcl_A 11 RLRIYIGENDKW-----EGRPLYKVIVEKLREMGI--AGATVYRGIYGFGKK-SRVHSSDVIRLSTDLPIIVEVVDR 79 (127)
T ss_dssp EEEEEEETTCEE-----TTEEHHHHHHHHHHHTTC--SCEEEEECSEEEC---------------CCCEEEEEEEEE
T ss_pred EEEEEEcccccc-----CCcCHHHHHHHHHHHCCC--CeEEEEcCcEEECCC-CCEecceeeecCCCCCEEEEEEcC
Confidence 799999998766 699999999999999999 45899993 222 223455555555 45566676653
No 50
>1k8r_B Protein kinase BYR2; signal transduction, cancer, GTPase, ubiquitin fold, signaling protein; HET: GNP; 3.00A {Schizosaccharomyces pombe} SCOP: d.15.1.5 PDB: 1i35_A
Probab=71.80 E-value=6.8 Score=26.57 Aligned_cols=42 Identities=26% Similarity=0.169 Sum_probs=33.4
Q ss_pred EEEEcCCCCeeeEEecCCCcHHHHHHHHHHhcCC-CCCceEEEeC
Q psy7980 12 LRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNL-KPEMCTAYDS 55 (93)
Q Consensus 12 irv~LPn~QrT~V~vrpG~tlrdaL~Kalk~R~L-~~~~C~Vy~~ 55 (93)
+|..==|||-.-|+.+...+ .+|++|||+-|| .|+-=.||..
T Consensus 3 LrFIacnGQTRaVq~~~~y~--~~L~~ALkKF~ledpskw~Vcvt 45 (110)
T 1k8r_B 3 LRFIACNGQTRAVQSRGDYQ--KTLAIALKKFSLEDASKFIVCVS 45 (110)
T ss_dssp EEEECSTTCEEEEECCSCHH--HHHHHHHHHHTCCCTTSEEEEEE
T ss_pred eEEeecCCceEEeeehhhHH--HHHHHHHHHcCCCChhHeEEEEe
Confidence 45555699999999887655 999999999999 5667777774
No 51
>1i7h_A Ferredoxin; 2Fe-2S,electron transport; 1.70A {Escherichia coli} SCOP: d.15.4.1
Probab=71.44 E-value=4.4 Score=25.75 Aligned_cols=40 Identities=13% Similarity=0.208 Sum_probs=28.0
Q ss_pred eEEEEcCCC---CeeeEEecCCCcHHHHHHHHHHhcCC----------CCCceEEEe
Q psy7980 11 LLRAQLPNQ---QRTSVHIRKGQTLLEALSKAMKLRNL----------KPEMCTAYD 54 (93)
Q Consensus 11 ~irv~LPn~---QrT~V~vrpG~tlrdaL~Kalk~R~L----------~~~~C~Vy~ 54 (93)
.|.+..+|+ ....+++.+|.||-||+..+ |+ ....|.|+.
T Consensus 3 ~i~~~~~~g~~~~~~~~~~~~g~tlL~a~~~~----gi~i~~~C~~~G~Cg~C~v~v 55 (111)
T 1i7h_A 3 KIVILPHQDLCPDGAVLEANSGETILDAALRN----GIEIEHACEKSCACTTCHCIV 55 (111)
T ss_dssp EEEECCBTTTBTTCEEEECCTTCBHHHHHHHT----TCCCCCTTSSSSCCSTTEEEE
T ss_pred EEEEEeCCCcCCCCeEEEeCCCCcHHHHHHHc----CCCCcccCCCCCcCCCCEEEE
Confidence 355666554 55689999999999988754 43 233677877
No 52
>3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4, CAMP, SP-camps, GEF, gunanine nucleotide exchange factor, G-protein, GTP-binding, nucleotide-binding; HET: SP1; 2.20A {Mus musculus}
Probab=71.42 E-value=9.3 Score=31.85 Aligned_cols=60 Identities=12% Similarity=0.158 Sum_probs=45.3
Q ss_pred CceEEEEcCCCCeeeEEecCCCcHHHHHHHHHHhcCCCCC--ceEEEeCCCCcccccCCCCCC
Q psy7980 9 GILLRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKPE--MCTAYDSNTGVSLQWDTDSDH 69 (93)
Q Consensus 9 ~~~irv~LPn~QrT~V~vrpG~tlrdaL~Kalk~R~L~~~--~C~Vy~~~~~~~i~wdtD~~~ 69 (93)
...+|||.|+++.+.+.++...|.++.+.-+.++=|+.-+ -|+|-..+++..+. ++|.+.
T Consensus 352 ~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~v~~~~~~~~~~-~~~~~~ 413 (694)
T 3cf6_E 352 EVLFKVYCIDHTYTTIRVPVAASVKEVISAVADKLGSGEGLIIVKMNSGGEKVVLK-SNDVSV 413 (694)
T ss_dssp EEEEEEECTTSCEEEEEEETTCBHHHHHHHHHHHHTCCSCEEEEEECTTSCEEECC-TTCBCC
T ss_pred ceeEEEEccCCceeEEEeeccccHHHHHHHHHHHhCCcccceEEEEeecCcccccC-cccccc
Confidence 3479999999999999999999999999999999887544 45555445544443 445443
No 53
>1o51_A Hypothetical protein TM0021; ferredoxin-like fold, structural genomics, joint center for structural genomics, JCSG; HET: ADP; 2.50A {Thermotoga maritima} SCOP: d.58.5.4
Probab=71.05 E-value=19 Score=23.76 Aligned_cols=65 Identities=23% Similarity=0.270 Sum_probs=40.1
Q ss_pred eEEEEcCCCCeeeEEecCCCcHHHHHHHHHHhcCCCCCceEEEeC--C-CCcccccCCCCCCcC-CceeEEEeecc
Q psy7980 11 LLRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKPEMCTAYDS--N-TGVSLQWDTDSDHLP-TTEIRVEVMEG 82 (93)
Q Consensus 11 ~irv~LPn~QrT~V~vrpG~tlrdaL~Kalk~R~L~~~~C~Vy~~--~-~~~~i~wdtD~~~L~-~eEl~Ve~ld~ 82 (93)
.+|+|+-++.+. .|..|+++|...++..|+.= ..||++ | .....-+..++-.|+ +.-+.||+.|.
T Consensus 15 ~Lriy~~E~~~~-----~g~pL~~~Iv~~~~~~GiaG--aTV~rgi~GfG~~g~ih~~~~l~ls~dlPV~Ie~Vd~ 83 (114)
T 1o51_A 15 LLKIYLGEKDKH-----SGKPLFEYLVKRAYELGMKG--VTVYRGIMGFGHKRHMHRSDFFSLSPDLPIVLEIVDE 83 (114)
T ss_dssp EEEEEEETTCEE-----TTEEHHHHHHHHHHHTTCSC--CEEEECSCCCCC-------------CCCEEEEEEEEC
T ss_pred EEEEEECCcccc-----CCeEHHHHHHHHHHHCCCCe--EEEEcCcEEECCCCCEEccceeecCCCCCEEEEEEcC
Confidence 589999888665 59999999999999988764 789983 1 222223555666665 45677777664
No 54
>3vqi_A ATG5; autophagy, E3-like, ubiquitin-fold, PRE-autoph structure, protein turnover, protein transport; HET: EPE; 2.50A {Kluyveromyces marxianus}
Probab=70.56 E-value=2.7 Score=32.00 Aligned_cols=33 Identities=12% Similarity=0.038 Sum_probs=24.5
Q ss_pred CceEEEEcCCCCeeeEEecC---CCcHHHHHHHHHH
Q psy7980 9 GILLRAQLPNQQRTSVHIRK---GQTLLEALSKAMK 41 (93)
Q Consensus 9 ~~~irv~LPn~QrT~V~vrp---G~tlrdaL~Kalk 41 (93)
..=+|+|+|++...--.+.| .+||.|+|...+.
T Consensus 199 ~IPiRIy~~~~~~iQ~~i~~~~~~~TLg~~L~~~lp 234 (274)
T 3vqi_A 199 SLPVRVWTSNYAVLQPTVPVTDKELSVAELLDSIKL 234 (274)
T ss_dssp BCCEEEECTTSCEECCCCBCC---CBHHHHHHTTTC
T ss_pred ceeEEEEcCCCCeEecccCCCCccccHHHHHHHhcc
Confidence 34499999998444445556 8899999998876
No 55
>1iue_A Ferredoxin; electron transport, iron-sulfur; 1.70A {Plasmodium falciparum} SCOP: d.15.4.1
Probab=69.70 E-value=4.1 Score=25.33 Aligned_cols=39 Identities=13% Similarity=0.227 Sum_probs=28.4
Q ss_pred eEEEEcCCCCeeeEEecCCCcHHHHHHHHHHhcCC---------CCCceEEEe
Q psy7980 11 LLRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNL---------KPEMCTAYD 54 (93)
Q Consensus 11 ~irv~LPn~QrT~V~vrpG~tlrdaL~Kalk~R~L---------~~~~C~Vy~ 54 (93)
.|.+..|++ ...+++.+|.||-||+.++ |+ ....|.|+.
T Consensus 4 ~v~~~~~~~-~~~~~~~~g~tlL~a~~~~----gi~i~~~C~~G~Cg~C~v~v 51 (98)
T 1iue_A 4 NITLRTNDG-EKKIECNEDEYILDASERQ----NVELPYSCRGGSCSTCAAKL 51 (98)
T ss_dssp EEEEEETTE-EEEEEEETTSCHHHHHHHT----TCCCCCSSCSSSSSTTEEEE
T ss_pred EEEEEeCCC-eEEEEeCCCCcHHHHHHHc----CCCCCCCCCCCcCCCCEEEE
Confidence 356666776 6779999999999998764 54 233688875
No 56
>1ffv_A CUTS, iron-sulfur protein of carbon monoxide dehydrogenase; hydrolase; HET: ARO PCD FAD; 2.25A {Hydrogenophaga pseudoflava} SCOP: a.56.1.1 d.15.4.2 PDB: 1ffu_A*
Probab=68.28 E-value=7.7 Score=27.21 Aligned_cols=67 Identities=13% Similarity=0.116 Sum_probs=41.8
Q ss_pred EEEEcCCCCeeeEEecCCCcHHHHHHHHHHhcCC-------CCCceEEEeCCCCcccccCCCCCCcCCceeE-EEee
Q psy7980 12 LRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNL-------KPEMCTAYDSNTGVSLQWDTDSDHLPTTEIR-VEVM 80 (93)
Q Consensus 12 irv~LPn~QrT~V~vrpG~tlrdaL~Kalk~R~L-------~~~~C~Vy~~~~~~~i~wdtD~~~L~~eEl~-Ve~l 80 (93)
+.+. -|++...+++.||+||-|+|...+...|. ..-.|.|...+ +...+=-+-+..+.|.+|. +|=+
T Consensus 6 i~~~-vNG~~~~~~v~~~~tLLd~LR~~lgltg~k~gC~~G~CGaCtV~vdG-~~v~sC~~~~~~~~G~~I~TiEgL 80 (163)
T 1ffv_A 6 ITVN-VNGKAQEKAVEPRTLLIHFLREELNLTGAHIGCETSHCGACTVDIDG-RSVKSCTHLAVQCDGSEVLTVEGL 80 (163)
T ss_dssp EEEE-ETTEEEEEEECTTCBHHHHHHHTSCCTTSCCCCSSSCSCTTEEEETT-EEEEGGGSBGGGGTTCEEECGGGT
T ss_pred EEEE-ECCEEEEEecCCCCcHHHHHHhcCCCcccccCCCCCCCCCCEEEECC-cEecchHhhHHHhCCceEEEECCC
Confidence 4443 48888889999999999999986544332 23367888854 2233334444445566553 4443
No 57
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=68.27 E-value=18 Score=22.90 Aligned_cols=45 Identities=13% Similarity=0.065 Sum_probs=38.3
Q ss_pred CceEEEEcCCCCeeeEEec-CCCcHHHHHHHHHHhcCCCCCceEEEe
Q psy7980 9 GILLRAQLPNQQRTSVHIR-KGQTLLEALSKAMKLRNLKPEMCTAYD 54 (93)
Q Consensus 9 ~~~irv~LPn~QrT~V~vr-pG~tlrdaL~Kalk~R~L~~~~C~Vy~ 54 (93)
++.|||-=++++. .|+|. |..|+.|-..|..++-|+.++.=.++.
T Consensus 7 ~M~irvrs~~G~~-~v~v~~~~~Tv~~LK~kI~~~~gip~~~QrL~~ 52 (107)
T 1wf9_A 7 GTMLRVRSRDGLE-RVSVDGPHITVSQLKTLIQDQLQIPIHNQTLST 52 (107)
T ss_dssp CEEEEEECSSCEE-EEEECCTTSBHHHHHHHHHHHSCCCTTTCCCBS
T ss_pred eEEEEEECCCCCE-EEEECCCCCcHHHHHHHHHHHhCcCcccCEEEE
Confidence 5689999999977 68999 999999999999999999888555544
No 58
>3vr8_B Iron-sulfur subunit of succinate dehydrogenase; membrane protein, reductase, mitochondria MEMB oxidoreductase; HET: FAD HEM RQX EPH; 2.81A {Ascaris suum} PDB: 3vrb_B*
Probab=67.01 E-value=11 Score=28.61 Aligned_cols=67 Identities=16% Similarity=0.200 Sum_probs=41.5
Q ss_pred CeeeEEecC-CCcHHHHHHHHHHhcC--------C---CCCceEEEeCCCCcccccCCCCCCcCCceeEEEeeccccccc
Q psy7980 20 QRTSVHIRK-GQTLLEALSKAMKLRN--------L---KPEMCTAYDSNTGVSLQWDTDSDHLPTTEIRVEVMEGNLALS 87 (93)
Q Consensus 20 QrT~V~vrp-G~tlrdaL~Kalk~R~--------L---~~~~C~Vy~~~~~~~i~wdtD~~~L~~eEl~Ve~ld~~p~~~ 87 (93)
|.-.|++.+ |+||-|||.++-..-+ . ....|.|-..|.. ..+=.+-+....|+.+.+|=|.++|.++
T Consensus 55 ~~~~v~v~~~~~tlLdaL~~i~~~~~ptl~~~~~C~~G~CGsC~V~InG~~-~laC~t~v~~~~~~~~tIepL~~~pVik 133 (282)
T 3vr8_B 55 QKFDVDLDKCGTMVLDALIKIKNEVDPTLTFRRSCREGICGSCAMNIAGEN-TLACICNIDQNTSKTTKIYPLPHMFVIK 133 (282)
T ss_pred EEEEEEeCCCCCcHHHHHHhcCcccCCceeecCCCCCCCCCCCEEEECCEE-ecchhhhHhHhcCCcEEeccCCCCceee
Confidence 567788998 9999999987432211 1 1345788775432 1122222222236788999999999654
No 59
>1n62_A Carbon monoxide dehydrogenase small chain; CODH, molybdenum, molybdopterin, oxidoreductase; HET: CUB MCN FAD; 1.09A {Oligotropha carboxidovorans} SCOP: a.56.1.1 d.15.4.2 PDB: 1n5w_A* 1n61_A* 1n60_A* 1n63_A* 1zxi_A*
Probab=66.68 E-value=8.7 Score=27.03 Aligned_cols=67 Identities=12% Similarity=0.062 Sum_probs=41.6
Q ss_pred EEEEcCCCCeeeEEecCCCcHHHHHHHHHHhcCC-------CCCceEEEeCCCCcccccCCCCCCcCCceeE-EEee
Q psy7980 12 LRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNL-------KPEMCTAYDSNTGVSLQWDTDSDHLPTTEIR-VEVM 80 (93)
Q Consensus 12 irv~LPn~QrT~V~vrpG~tlrdaL~Kalk~R~L-------~~~~C~Vy~~~~~~~i~wdtD~~~L~~eEl~-Ve~l 80 (93)
+.+. -|++...+++.||+||-|+|...+..-|. ..-.|.|...+ +...+=-+-+..+.|.+|. +|=+
T Consensus 6 i~~~-vNG~~~~~~v~~~~tLLd~LR~~lgl~g~k~gC~~G~CGaCtV~vdG-~~v~SC~~~~~~~~G~~V~TiEgL 80 (166)
T 1n62_A 6 IELT-INGHPVEALVEPRTLLIHFIREQQNLTGAHIGCDTSHCGACTVDLDG-MSVKSCTMFAVQANGASITTIEGM 80 (166)
T ss_dssp EEEE-ETTEEEEEEECTTCBHHHHHHHTSCCTTSCCCCSSSCSCTTEEEETT-EEEEGGGSBGGGGTTCEEECGGGS
T ss_pred EEEE-ECCEEEEEecCCCCcHHHHHHHcCCCCccccCCCCCCCCCCEEEECC-cEEechhhhHHHhCCceEEEeCCC
Confidence 4444 48888889999999999999986544332 23367888854 2233333344444566553 4443
No 60
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=66.34 E-value=21 Score=22.37 Aligned_cols=46 Identities=11% Similarity=0.027 Sum_probs=39.1
Q ss_pred CceEEEEcCCCCeeeEEecCCCcHHHHHHHHHHhcCCCCCceEEEe
Q psy7980 9 GILLRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKPEMCTAYD 54 (93)
Q Consensus 9 ~~~irv~LPn~QrT~V~vrpG~tlrdaL~Kalk~R~L~~~~C~Vy~ 54 (93)
...|+|--.++....+.|++..++.....+..++.|++++.....-
T Consensus 7 ~i~ikVk~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~F 52 (94)
T 2io1_B 7 HINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRF 52 (94)
T ss_dssp EEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEE
T ss_pred eEEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHhCCCcccEEEEE
Confidence 4567888788988899999999999999999999999998655444
No 61
>3ah7_A [2Fe-2S]ferredoxin; [2Fe-2S] cluster, iron-sulfur cluster biosynthes pseudomonas, metal binding protein; 1.90A {Pseudomonas putida}
Probab=65.09 E-value=7.2 Score=24.75 Aligned_cols=43 Identities=12% Similarity=0.128 Sum_probs=26.6
Q ss_pred EEEEcCCC---CeeeEEecCCCcHHHHHHHHHHh-----cC-CCCCceEEEe
Q psy7980 12 LRAQLPNQ---QRTSVHIRKGQTLLEALSKAMKL-----RN-LKPEMCTAYD 54 (93)
Q Consensus 12 irv~LPn~---QrT~V~vrpG~tlrdaL~Kalk~-----R~-L~~~~C~Vy~ 54 (93)
|.+.-+++ ....+++.+|.||-||+.++=-. +| =..-.|.|+.
T Consensus 4 vt~~~~~g~~~~~~~v~~~~g~tlL~aa~~~Gi~i~~~C~g~G~CgtC~v~v 55 (113)
T 3ah7_A 4 VTFLPHEKFCPEGLTVEVKPGTNILELAHDHHIEMESACGGVKACTTCHCIV 55 (113)
T ss_dssp EEECCBTTTBTTCEEEECCTTCBHHHHHHHTTCCCCCTTCSSSSCSTTEEEE
T ss_pred EEEEcCCCcCCCCeEEEECCCCcHHHHHHHcCCCCCcCCCCCCCcCCCEEEE
Confidence 44544444 45678999999999987643100 11 2344788887
No 62
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=64.89 E-value=18 Score=20.94 Aligned_cols=45 Identities=7% Similarity=0.121 Sum_probs=37.6
Q ss_pred ceEEEEcCCCCeeeEEecCCCcHHHHHHHHHHhcCCCCCce-EEEe
Q psy7980 10 ILLRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKPEMC-TAYD 54 (93)
Q Consensus 10 ~~irv~LPn~QrT~V~vrpG~tlrdaL~Kalk~R~L~~~~C-~Vy~ 54 (93)
..|.|-.++++...++|.+..|+.+--.+..++-+++++.- .+|.
T Consensus 4 m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~ip~~~qrL~~~ 49 (85)
T 3n3k_B 4 MRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA 49 (85)
T ss_dssp CEEEEECGGGCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEET
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEEC
Confidence 45777778988889999999999999999999999999844 4443
No 63
>3n9z_C Adrenodoxin; cytochrome P450, 22-hydroxycholesterol, cholesterol SIDE CHA cleavage, structural genomics; HET: HEM HC9; 2.17A {Homo sapiens} SCOP: d.15.4.1 PDB: 3na1_C* 3p1m_A* 1l6u_A 1l6v_A 1e6e_B* 1cje_A
Probab=64.58 E-value=1.4 Score=29.48 Aligned_cols=43 Identities=12% Similarity=0.210 Sum_probs=4.9
Q ss_pred EEEEcCCCCeeeEEecCCCcHHHHHHHH-HHhc------C-CCCCceEEEe
Q psy7980 12 LRAQLPNQQRTSVHIRKGQTLLEALSKA-MKLR------N-LKPEMCTAYD 54 (93)
Q Consensus 12 irv~LPn~QrT~V~vrpG~tlrdaL~Ka-lk~R------~-L~~~~C~Vy~ 54 (93)
|.+.-|++++..|++.+|.||.+|+..+ +..- | -....|.|+.
T Consensus 8 Vtf~~~~G~~~~v~~~~G~tLl~aa~~~gi~i~g~~~CgG~g~CgtC~v~v 58 (123)
T 3n9z_C 8 VHFINRDGETLTTKGKVGDSLLDVVVENNLDIDGFGACEGTLACSTCHLIF 58 (123)
T ss_dssp -----------------------------------CTTCSSSSCSTTBC--
T ss_pred EEEEeCCCCEEEEEECCCCcHHHHHHHcCCCCCcCCCCCCCCEeCCCeeEE
Confidence 4444599999999999999999988653 1111 1 2344688877
No 64
>1jq4_A Methane monooxygenase component C; [2Fe-2S] ferredoxin, oxidoreductase; NMR {Methylococcus capsulatus str} SCOP: d.15.4.2
Probab=64.50 E-value=9.1 Score=23.57 Aligned_cols=28 Identities=11% Similarity=0.181 Sum_probs=22.2
Q ss_pred EEEEcCCCCeeeEEecCCCcHHHHHHHH
Q psy7980 12 LRAQLPNQQRTSVHIRKGQTLLEALSKA 39 (93)
Q Consensus 12 irv~LPn~QrT~V~vrpG~tlrdaL~Ka 39 (93)
|.+..+++....+++.+|.||-|++.++
T Consensus 7 v~~~~~~~~~~~~~~~~g~tlL~a~~~~ 34 (98)
T 1jq4_A 7 ITAVTEDGESLRFECRSDEDVITAALRQ 34 (98)
T ss_dssp EEEEETTTEEEEEEEESCCTHHHHHHHH
T ss_pred EEEEecCCCcEEEEeCCCChHHHHHHHc
Confidence 4555566777889999999999998764
No 65
>1czp_A Ferredoxin I; [2Fe-2S] protein, crystal reduced with dithionite, electron; 1.17A {Nostoc SP} SCOP: d.15.4.1 PDB: 1ewy_C* 1fxa_A 1qt9_A 1qog_A 1j7c_A 1j7b_A 1qof_A 1qob_A 1j7a_A 1qoa_A 1rfk_A 3p63_A 4fxc_A 3ab5_A 1roe_A 2cjn_A 2cjo_A 1off_A 1dox_A 1doy_A ...
Probab=64.04 E-value=8.3 Score=23.81 Aligned_cols=39 Identities=8% Similarity=0.172 Sum_probs=27.0
Q ss_pred EEEEcCCCC-eeeEEecCCCcHHHHHHHHHHhcCCC---------CCceEEEe
Q psy7980 12 LRAQLPNQQ-RTSVHIRKGQTLLEALSKAMKLRNLK---------PEMCTAYD 54 (93)
Q Consensus 12 irv~LPn~Q-rT~V~vrpG~tlrdaL~Kalk~R~L~---------~~~C~Vy~ 54 (93)
|.+..|++. ...+++.+|.||-||+.++ |+. ...|.|..
T Consensus 5 V~~~~~~~~~~~~~~~~~g~tlL~a~~~~----gi~i~~~C~~G~Cg~C~v~v 53 (98)
T 1czp_A 5 VTLINEAEGTKHEIEVPDDEYILDAAEEQ----GYDLPFSCRAGACSTCAGKL 53 (98)
T ss_dssp EEEEETTTTEEEEEEEETTSCHHHHHHHT----TCCCCCSSSSSSSSTTEEEE
T ss_pred EEEEeCCCCCcEEEEeCCCCCHHHHHHHc----CCCccCCCCCCCCCCCeEEE
Confidence 444446653 5678999999999988764 553 33677776
No 66
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=63.82 E-value=17 Score=24.73 Aligned_cols=68 Identities=13% Similarity=0.188 Sum_probs=47.2
Q ss_pred eEEEE-cCCCCeeeEEecCCCcHHHHHHHHHHhcCCCCC-ceEEEeCCCCcccccCCCCCCc---CCceeEEEeec
Q psy7980 11 LLRAQ-LPNQQRTSVHIRKGQTLLEALSKAMKLRNLKPE-MCTAYDSNTGVSLQWDTDSDHL---PTTEIRVEVME 81 (93)
Q Consensus 11 ~irv~-LPn~QrT~V~vrpG~tlrdaL~Kalk~R~L~~~-~C~Vy~~~~~~~i~wdtD~~~L---~~eEl~Ve~ld 81 (93)
.+.|+ .|++|...+.+.+..|+.|-=.+.-+.-+.+++ .|.+|.++ .+.-|+-+... .|.-|+++...
T Consensus 17 tvkv~l~~~~~k~tv~v~~d~TV~dLKe~ls~~~~iP~e~qrLIy~GK---iLKD~eTL~~~gIk~g~TIhLvi~s 89 (118)
T 2daf_A 17 TVKVVLIPVGQEIVIPFKVDTILKYLKDHFSHLLGIPHSVLQIRYSGK---ILKNNETLVQHGVKPQEIVQVEIFS 89 (118)
T ss_dssp EEEEEETTTCCEEEEEECSSSCSHHHHHHHHHHHTCCTTTEEEEETTE---EECSSCCHHHHSCCSSCEEEEEEEE
T ss_pred EEEEEEcCCCcEEEEEeCCCCcHHHHHHHHHhhhCCChHHEEEEECCe---EcCCcchHHHcCCCCCCEEEEEEec
Confidence 57776 899999999999999988766666666688888 89999852 22212222222 47777776653
No 67
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=63.40 E-value=23 Score=21.76 Aligned_cols=46 Identities=7% Similarity=-0.024 Sum_probs=38.0
Q ss_pred ceEEEEcCCCCeeeEEecCCCcHHHHHHHHHHhcCCCCCceEEEeC
Q psy7980 10 ILLRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKPEMCTAYDS 55 (93)
Q Consensus 10 ~~irv~LPn~QrT~V~vrpG~tlrdaL~Kalk~R~L~~~~C~Vy~~ 55 (93)
..|.|--++++...+.|.+..|+.+.-.+..++.|++++....+-.
T Consensus 22 m~I~Vk~~~g~~~~l~v~~~~tv~~lK~~i~~~~gip~~~qrLif~ 67 (97)
T 1wyw_B 22 IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFE 67 (97)
T ss_dssp EEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEET
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEEC
Confidence 4566777888888999999999999999999999999986554443
No 68
>1frd_A Heterocyst [2Fe-2S] ferredoxin; electron transport; 1.70A {Nostoc SP} SCOP: d.15.4.1
Probab=63.29 E-value=8.8 Score=23.56 Aligned_cols=39 Identities=18% Similarity=0.301 Sum_probs=27.0
Q ss_pred EEEEcCCCC-eeeEEecCCCcHHHHHHHHHHhcCCC---------CCceEEEe
Q psy7980 12 LRAQLPNQQ-RTSVHIRKGQTLLEALSKAMKLRNLK---------PEMCTAYD 54 (93)
Q Consensus 12 irv~LPn~Q-rT~V~vrpG~tlrdaL~Kalk~R~L~---------~~~C~Vy~ 54 (93)
|.+..|++. ...+++.+|.||-||+.++ |+. ...|.|+.
T Consensus 5 V~~~~~~~~~~~~~~~~~g~tlL~a~~~~----gi~i~~~C~~G~Cg~C~v~v 53 (98)
T 1frd_A 5 VRLINKKQDIDTTIEIDEETTILDGAEEN----GIELPFSCHSGSCSSCVGKV 53 (98)
T ss_dssp EEEEETTTTEEEEEEEETTSCHHHHHHHT----TCCCCCSSSSSSSSTTEEEE
T ss_pred EEEEeCCCCCCEEEEeCCCCcHHHHHHHc----CCCcccCCCCCCCCCCEEEE
Confidence 455556652 5678999999999988653 553 33677776
No 69
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=61.87 E-value=22 Score=21.05 Aligned_cols=47 Identities=9% Similarity=0.051 Sum_probs=38.8
Q ss_pred CceEEEEcCCCCeeeEEecCCCcHHHHHHHHHHhcCCCCC-ceEEEeC
Q psy7980 9 GILLRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKPE-MCTAYDS 55 (93)
Q Consensus 9 ~~~irv~LPn~QrT~V~vrpG~tlrdaL~Kalk~R~L~~~-~C~Vy~~ 55 (93)
...|.|-.++++...++|.+..|+.+-=.+.-++-|+.++ +-.+|.+
T Consensus 5 ~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~G 52 (90)
T 4dwf_A 5 SLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQG 52 (90)
T ss_dssp EEEEEEEETTCCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETT
T ss_pred EEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECC
Confidence 4567787889999899999999999998888888899888 5555643
No 70
>2jg6_A DNA-3-methyladenine glycosidase; 3-methyladenine-DNA-glycosylase-I, hydrolase; 1.70A {Staphylococcus aureus} PDB: 4aia_A* 4ai5_A* 4ai4_A
Probab=61.06 E-value=4 Score=29.83 Aligned_cols=21 Identities=24% Similarity=0.120 Sum_probs=16.6
Q ss_pred ecCCCcHHHHHHHHHHhcCCC
Q psy7980 26 IRKGQTLLEALSKAMKLRNLK 46 (93)
Q Consensus 26 vrpG~tlrdaL~Kalk~R~L~ 46 (93)
|-.-..+-++|+|.||+||+.
T Consensus 135 vp~~t~~S~~lsKdLKkrGFk 155 (186)
T 2jg6_A 135 RITVDDTATQLSKDLKQYGFK 155 (186)
T ss_dssp CCSCCHHHHHHHHHHHTTTCC
T ss_pred cCCCCHHHHHHHHHHHHCCCe
Confidence 333446889999999999985
No 71
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=59.39 E-value=23 Score=20.28 Aligned_cols=47 Identities=9% Similarity=0.029 Sum_probs=37.4
Q ss_pred CCceEEEEcCCCCeeeEEecCCCcHHHHHHHHHHhcCCCCCceEEEe
Q psy7980 8 RGILLRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKPEMCTAYD 54 (93)
Q Consensus 8 ~~~~irv~LPn~QrT~V~vrpG~tlrdaL~Kalk~R~L~~~~C~Vy~ 54 (93)
....|.|-.++++...++|.+..|+.+--.+.-+.-|++++.-..+.
T Consensus 6 ~~m~i~vk~~~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~ 52 (81)
T 2dzi_A 6 SGMQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLF 52 (81)
T ss_dssp SSEEEEEEETTSCEEEEEECSSCBHHHHHHHHHHHTCCCTTTCEEEE
T ss_pred CcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEE
Confidence 34567777788988889999999999988888888999888544443
No 72
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=58.95 E-value=31 Score=21.79 Aligned_cols=52 Identities=13% Similarity=0.084 Sum_probs=38.8
Q ss_pred CeeeEEecCCCcHHHHHHHHHHhcCCCCC-ceEEEeCCCCccc-ccCCCCCCcC
Q psy7980 20 QRTSVHIRKGQTLLEALSKAMKLRNLKPE-MCTAYDSNTGVSL-QWDTDSDHLP 71 (93)
Q Consensus 20 QrT~V~vrpG~tlrdaL~Kalk~R~L~~~-~C~Vy~~~~~~~i-~wdtD~~~L~ 71 (93)
+...+.+.|.+|+.+-=.|.-.+=|++|+ +-..|.++..+.+ .++.|-..|.
T Consensus 27 ~~~e~~v~~~~TV~~LK~kIe~~~Gip~~~QrLi~~g~~g~~~~~L~~D~~tL~ 80 (97)
T 2kj6_A 27 FSADARFSPQMSVEAVKEKLWKKCGTSVNSMALELYDDSGSKVAVLSDDSRPLG 80 (97)
T ss_dssp CCEEEEECTTCCHHHHHHHHHHHHCCCTTSEEEEEECSSSCBCCCSSGGGSCHH
T ss_pred eEEEEEeCCCChHHHHHHHHHHHHCcCHHHeEEEEecCCCcccceecCCcCCHH
Confidence 46789999999999999999999999998 5666666433333 4456666664
No 73
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=58.07 E-value=26 Score=20.54 Aligned_cols=45 Identities=9% Similarity=0.012 Sum_probs=37.8
Q ss_pred eEEEEcCCCCeeeEEecCCCcHHHHHHHHHHhcCCCCCceEEEeC
Q psy7980 11 LLRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKPEMCTAYDS 55 (93)
Q Consensus 11 ~irv~LPn~QrT~V~vrpG~tlrdaL~Kalk~R~L~~~~C~Vy~~ 55 (93)
.|+|--+++....+.+++..++..-..+-.++.|++++.....-.
T Consensus 3 ~lkV~~~~g~~v~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fd 47 (72)
T 1wm3_A 3 NLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFD 47 (72)
T ss_dssp EEEEECTTSCEEEEEECTTSCTHHHHHHHHHHHTCCTTTCEEEET
T ss_pred EEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEEC
Confidence 467777888888999999999999999999999999986654443
No 74
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=57.67 E-value=27 Score=20.60 Aligned_cols=50 Identities=10% Similarity=0.063 Sum_probs=39.0
Q ss_pred cCCCCceEEEEcCCCCeeeEEecCCCcHHHHHHHHHHhcCCCCC-ceEEEe
Q psy7980 5 LVPRGILLRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKPE-MCTAYD 54 (93)
Q Consensus 5 ~~p~~~~irv~LPn~QrT~V~vrpG~tlrdaL~Kalk~R~L~~~-~C~Vy~ 54 (93)
+.|....|.|--++++...+.|.+..|+.+-=.+.-+.-|++++ +-.+|.
T Consensus 13 ~~~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~ 63 (88)
T 4eew_A 13 EEPDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQ 63 (88)
T ss_dssp --CCEEEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEET
T ss_pred cCCCeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEEC
Confidence 34445567777788988899999999999998888888899888 445554
No 75
>1rm6_C 4-hydroxybenzoyl-COA reductase gamma subunit; xanthine oxidase family, dimer heterotrimers, oxidoreductase; HET: PCD FAD SF4 EPE; 1.60A {Thauera aromatica} SCOP: a.56.1.1 d.15.4.2 PDB: 1sb3_C*
Probab=56.29 E-value=8 Score=26.83 Aligned_cols=65 Identities=18% Similarity=0.220 Sum_probs=40.5
Q ss_pred CCCCeeeEEecCCCcHHHHHHHHHHhcCCC-------CCceEEEeCCCCcccccCCCCCCcCCcee-EEEeecc
Q psy7980 17 PNQQRTSVHIRKGQTLLEALSKAMKLRNLK-------PEMCTAYDSNTGVSLQWDTDSDHLPTTEI-RVEVMEG 82 (93)
Q Consensus 17 Pn~QrT~V~vrpG~tlrdaL~Kalk~R~L~-------~~~C~Vy~~~~~~~i~wdtD~~~L~~eEl-~Ve~ld~ 82 (93)
-|++...|++.||+||-|+|...+...+.. .-.|.|...+. ...+=-+-+..+.|.++ .+|=+.+
T Consensus 9 vNG~~~~v~~~~~~tLL~~Lr~~~gl~g~k~gC~~G~CGaCtV~vdG~-~v~sC~~~~~~~~G~~v~TiEgL~~ 81 (161)
T 1rm6_C 9 LNGRAREDLVPDNMLLLDYLRETVGLTGTKQGCDGGECGACTVLVDDR-PRLACSTLAHQVAGKKVETVESLAT 81 (161)
T ss_dssp ETTEEEEEEEETTCBHHHHHHHTTCCTTSCCCSSSSSSCTTEEEETTE-EEEGGGSBGGGGTTSEEECGGGSSB
T ss_pred ECCEEEEEecCCcCcHHHHHHHcCCCcccccCCCCCCCCCCEEEECCc-EEechHHHHHHhCCceEEEECCCCC
Confidence 488888899999999999999876444432 33578887542 22233333444446554 3454443
No 76
>3kwl_A Uncharacterized protein; putative oxidoreductase, multidomain, unknown function; 1.94A {Helicobacter pylori}
Probab=55.80 E-value=2.7 Score=34.01 Aligned_cols=63 Identities=16% Similarity=0.179 Sum_probs=42.6
Q ss_pred CeeeEEecCCCcHHHHHHHHHHhcCCCCC-ceEEEeCCCCcccccCCCCCCcC---CceeEEEeeccccccc
Q psy7980 20 QRTSVHIRKGQTLLEALSKAMKLRNLKPE-MCTAYDSNTGVSLQWDTDSDHLP---TTEIRVEVMEGNLALS 87 (93)
Q Consensus 20 QrT~V~vrpG~tlrdaL~Kalk~R~L~~~-~C~Vy~~~~~~~i~wdtD~~~L~---~eEl~Ve~ld~~p~~~ 87 (93)
|--.|++.+|+|+-|||.++ | .|+-. .|++...|.. .+. .|-+..+. |++|.+|=|.++|.++
T Consensus 43 ~~y~v~~~~~~~vLd~L~~i-k--~l~fr~sCam~ING~~-~la-~t~~~~~~~~~~~~i~iePl~~~pvik 109 (514)
T 3kwl_A 43 ESYFLEYQEDQYLLDLLKQL-K--GVSYSENIALKINQIA-VFE-DAKVSDLVAFFSKEWVLDPLSKRYALK 109 (514)
T ss_dssp EEEEEECCTTCBHHHHHTTS-T--TCCCCSSCCEEETTEE-ECS-CCBHHHHHHHHCSEEEEECSCSTTEEE
T ss_pred EEEEEeCCCCCcHHHHHHHh-h--hCeeeccceEEECCEe-hhh-hhhHHHHhhccCCcEEEEECCCCcccc
Confidence 34458999999999999864 1 33333 6888875432 222 45554442 7899999999999654
No 77
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=55.34 E-value=31 Score=20.62 Aligned_cols=47 Identities=6% Similarity=0.151 Sum_probs=38.9
Q ss_pred CceEEEEcCCCCeeeEEecCCCcHHHHHHHHHHhcCCCCC-ceEEEeC
Q psy7980 9 GILLRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKPE-MCTAYDS 55 (93)
Q Consensus 9 ~~~irv~LPn~QrT~V~vrpG~tlrdaL~Kalk~R~L~~~-~C~Vy~~ 55 (93)
...|.|-..+|+...+.|.+..|+.+--.+.-++-|+.++ +-.+|.+
T Consensus 17 ~m~i~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~G 64 (91)
T 3v6c_B 17 SMQIFVNTLTGTHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAG 64 (91)
T ss_dssp SEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETT
T ss_pred eEEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhhEEEEECC
Confidence 4457777789988899999999999999999999999988 5555643
No 78
>2ofk_A 3-methyladenine DNA glycosylase I, constitutive; DNA repair, base excision, helix-hairpin-helix, hydrolase; HET: PGE; 1.50A {Salmonella typhi} PDB: 2ofi_A* 1lmz_A 1nku_A 1p7m_A*
Probab=55.01 E-value=5.6 Score=28.94 Aligned_cols=18 Identities=39% Similarity=0.505 Sum_probs=15.3
Q ss_pred CCcHHHHHHHHHHhcCCC
Q psy7980 29 GQTLLEALSKAMKLRNLK 46 (93)
Q Consensus 29 G~tlrdaL~Kalk~R~L~ 46 (93)
-..+-++|+|.||+||+.
T Consensus 138 ~t~~S~~lsk~LKkrGfk 155 (183)
T 2ofk_A 138 STPASDALAKALKKRGFK 155 (183)
T ss_dssp CCHHHHHHHHHHHHTTCC
T ss_pred CCHHHHHHHHHHHhCCCe
Confidence 346789999999999985
No 79
>4dxa_B KREV interaction trapped protein 1; GTPase, FERM, protein-protein interaction, GTP binding, CYTO protein binding; HET: GSP; 1.95A {Homo sapiens} PDB: 3u7d_A
Probab=54.23 E-value=19 Score=26.68 Aligned_cols=44 Identities=16% Similarity=0.129 Sum_probs=32.4
Q ss_pred CCCceEEEEcCCCCeeeEEecC--CCcHHHHHHHHHHhcCCCC---CceEEEe
Q psy7980 7 PRGILLRAQLPNQQRTSVHIRK--GQTLLEALSKAMKLRNLKP---EMCTAYD 54 (93)
Q Consensus 7 p~~~~irv~LPn~QrT~V~vrp--G~tlrdaL~Kalk~R~L~~---~~C~Vy~ 54 (93)
|+-.-|+|||||++.-.+.+.+ -.|..|.+. .=||.. +.-+.|-
T Consensus 3 ~~~~~i~V~l~dg~~~~~~i~~~~~tt~~el~e----~lgL~~~~~~~FaL~~ 51 (322)
T 4dxa_B 3 PEFEKVRIYRMDGSYRSVELKHGNNTTVQQIME----GMRLSQETQQYFTIWI 51 (322)
T ss_dssp --CCEEEEECTTSCEEEEECTTGGGCCHHHHHT----TSSCCTTGGGGEEEEE
T ss_pred CCceEEEEEEECCcEEEEEEcCCCCCcHHHHHH----HhCcCccccCeeEEEE
Confidence 3344699999999999999999 678999854 346654 3566666
No 80
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=53.33 E-value=30 Score=19.88 Aligned_cols=47 Identities=9% Similarity=0.185 Sum_probs=38.5
Q ss_pred CceEEEEcCCCCeeeEEecCCCcHHHHHHHHHHhcCCCCC-ceEEEeC
Q psy7980 9 GILLRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKPE-MCTAYDS 55 (93)
Q Consensus 9 ~~~irv~LPn~QrT~V~vrpG~tlrdaL~Kalk~R~L~~~-~C~Vy~~ 55 (93)
+..|.|-.++|+...++|.+..|+.+-=.+.-++-|++++ +-.+|.+
T Consensus 4 ~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G 51 (79)
T 3phx_B 4 PLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEG 51 (79)
T ss_dssp CEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETT
T ss_pred CEEEEEEeCCCCEEEEEECCcChHHHHHHHHHhhcCCCHHHEEEEECC
Confidence 3467788899998899999999999998888888999988 4445543
No 81
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=53.08 E-value=30 Score=19.83 Aligned_cols=45 Identities=7% Similarity=0.161 Sum_probs=37.6
Q ss_pred ceEEEEcCCCCeeeEEecCCCcHHHHHHHHHHhcCCCCCce-EEEe
Q psy7980 10 ILLRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKPEMC-TAYD 54 (93)
Q Consensus 10 ~~irv~LPn~QrT~V~vrpG~tlrdaL~Kalk~R~L~~~~C-~Vy~ 54 (93)
..|.|-.++++...+++.+..|+.|--.+..+.-+++++.- .+|.
T Consensus 4 m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~qrL~~~ 49 (85)
T 3mtn_B 4 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA 49 (85)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEET
T ss_pred EEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHEEEEEC
Confidence 45778888999999999999999999999999999998844 4443
No 82
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2
Probab=52.45 E-value=47 Score=21.89 Aligned_cols=71 Identities=13% Similarity=0.085 Sum_probs=45.7
Q ss_pred ceEEEEcCCCCeeeEEecCCCcHHHHHHHHHHhcCCCCCceEEEeCCCCcccccCCCCCCcC------CceeEEEeec
Q psy7980 10 ILLRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKPEMCTAYDSNTGVSLQWDTDSDHLP------TTEIRVEVME 81 (93)
Q Consensus 10 ~~irv~LPn~QrT~V~vrpG~tlrdaL~Kalk~R~L~~~~C~Vy~~~~~~~i~wdtD~~~L~------~eEl~Ve~ld 81 (93)
..|++=||||.|-.-.+.+--||.+...=.-.. +..+..-..+..-.++.+.++..-.+|. ..-|.|+-+|
T Consensus 44 t~IqIRlPdG~rl~~rF~~~~tl~~V~~fV~~~-~~~~~~F~L~t~fPrk~l~~~d~~~TL~e~gL~psa~Liv~~~d 120 (124)
T 1wj4_A 44 AQLMLRYPDGKREQITLPEQAKLLALVKHVQSK-GYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQESG 120 (124)
T ss_dssp EEEEEECTTSCEEEEEEETTSCHHHHHHHHHHH-HCCTTTEEEECSSSCCEETSSCSSSCTTTTTCCSSBCCEEEECC
T ss_pred EEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEecCCCCcCCccCCCCCCHHHCCCCCceEEEEEEcc
Confidence 369999999999999999999998766544333 6666665555543445554432222332 4455666544
No 83
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=51.96 E-value=29 Score=19.32 Aligned_cols=44 Identities=7% Similarity=0.126 Sum_probs=35.9
Q ss_pred eEEEEcCCCCeeeEEecCCCcHHHHHHHHHHhcCCCCCceEEEe
Q psy7980 11 LLRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKPEMCTAYD 54 (93)
Q Consensus 11 ~irv~LPn~QrT~V~vrpG~tlrdaL~Kalk~R~L~~~~C~Vy~ 54 (93)
.|.|-.++++...++|.+..|+.+--.+.-+.-|++++.-..+.
T Consensus 2 ~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~ 45 (76)
T 1ndd_A 2 LIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIY 45 (76)
T ss_dssp EEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEE
T ss_pred EEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEE
Confidence 36677788988899999999999999988899999888444433
No 84
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=50.70 E-value=22 Score=21.97 Aligned_cols=26 Identities=12% Similarity=0.155 Sum_probs=21.7
Q ss_pred eEEEEcCCCCeeeEEecCCCcHHHHHHH
Q psy7980 11 LLRAQLPNQQRTSVHIRKGQTLLEALSK 38 (93)
Q Consensus 11 ~irv~LPn~QrT~V~vrpG~tlrdaL~K 38 (93)
-|-||+|+| ...++..|-|..|...+
T Consensus 7 ~i~v~tP~G--~~~~lp~GaT~~D~A~~ 32 (78)
T 3hvz_A 7 EVFVFTPKG--DVISLPIGSTVIDFAYA 32 (78)
T ss_dssp EEEEECTTS--CEEEEETTCBHHHHHHH
T ss_pred eEEEECCCC--CEEEecCCCCHHHHHHH
Confidence 478999999 56789999999996544
No 85
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=50.16 E-value=39 Score=20.24 Aligned_cols=46 Identities=15% Similarity=0.093 Sum_probs=38.5
Q ss_pred CceEEEEcCCC-CeeeEEecCCCcHHHHHHHHHHhcCCCCCceEEEe
Q psy7980 9 GILLRAQLPNQ-QRTSVHIRKGQTLLEALSKAMKLRNLKPEMCTAYD 54 (93)
Q Consensus 9 ~~~irv~LPn~-QrT~V~vrpG~tlrdaL~Kalk~R~L~~~~C~Vy~ 54 (93)
...|+|--.++ +...+.|++-.++.....+-.++.|+.++.....-
T Consensus 7 ~i~ikV~~~~g~~~i~~~i~~~t~l~kl~~~y~~~~gi~~~~~rf~f 53 (79)
T 3a4r_A 7 ELRLRVQGKEKHQMLEISLSPDSPLKVLMSHYEEAMGLSGHKLSFFF 53 (79)
T ss_dssp CEEEEEECSSTTCEEEEEECTTSCHHHHHHHHHHHHTCTTCCCEEEE
T ss_pred EEEEEEEeCCCCEEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEE
Confidence 55788888888 47889999999999999999999999998644443
No 86
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=49.11 E-value=48 Score=20.98 Aligned_cols=46 Identities=9% Similarity=0.207 Sum_probs=37.5
Q ss_pred CceEEEEcCCCCeeeEEecCCCcHHHHHHHHHHhcCCCCC-ceEEEe
Q psy7980 9 GILLRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKPE-MCTAYD 54 (93)
Q Consensus 9 ~~~irv~LPn~QrT~V~vrpG~tlrdaL~Kalk~R~L~~~-~C~Vy~ 54 (93)
...+.|-.++++...+.+.+..|+.+--.+.-++-|++++ +..+|.
T Consensus 76 ~~~i~Vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~qrL~~~ 122 (152)
T 3b08_A 76 GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA 122 (152)
T ss_dssp CEEEEEEESSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEET
T ss_pred ccceeeeecCCCEEEEEeCCCCcHHHHHHHHHHHhCcChhhEEEEEC
Confidence 4467777788989999999999999988888888899888 444554
No 87
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=49.05 E-value=36 Score=19.52 Aligned_cols=45 Identities=4% Similarity=-0.054 Sum_probs=36.9
Q ss_pred eEEEEcCCCCeeeEEecCCCcHHHHHHHHHHhcCCCCCceEEEeC
Q psy7980 11 LLRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKPEMCTAYDS 55 (93)
Q Consensus 11 ~irv~LPn~QrT~V~vrpG~tlrdaL~Kalk~R~L~~~~C~Vy~~ 55 (93)
.|.|--.+++...++|.+..|+.+.-.+..++.|++++....+-.
T Consensus 5 ~i~vk~~~g~~~~~~v~~~~tv~~lk~~i~~~~gi~~~~qrL~~~ 49 (79)
T 2uyz_B 5 KLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFE 49 (79)
T ss_dssp EEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEET
T ss_pred EEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEEC
Confidence 466667888888899999999999999999999999885554443
No 88
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=47.58 E-value=53 Score=21.04 Aligned_cols=47 Identities=11% Similarity=0.030 Sum_probs=39.4
Q ss_pred CceEEEEcCCCCeeeEEecCCCcHHHHHHHHHHhcCCCCCceEEEeC
Q psy7980 9 GILLRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKPEMCTAYDS 55 (93)
Q Consensus 9 ~~~irv~LPn~QrT~V~vrpG~tlrdaL~Kalk~R~L~~~~C~Vy~~ 55 (93)
...|+|.-.++....+.|++-.++.....+-.++.|+.++....+-.
T Consensus 24 ~I~IkVk~~~g~~i~~kVk~~t~l~kL~~~y~ek~gi~~~~~rf~Fd 70 (104)
T 1wz0_A 24 HINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFD 70 (104)
T ss_dssp CEEEEEECSSSCEEEEEECTTSCHHHHHHHHHHHHTCCTTTSCEESS
T ss_pred eEEEEEECCCCCEEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEEC
Confidence 44688888889888999999999999999999999999986544443
No 89
>4eku_A Protein-tyrosine kinase 2-beta; proline-rich tyrosine kinase 2, FERM domain, transferase; 3.25A {Homo sapiens}
Probab=47.41 E-value=19 Score=28.07 Aligned_cols=44 Identities=11% Similarity=0.082 Sum_probs=34.7
Q ss_pred eEEEEc------CCCCeeeEEecCCCcHHHHHHHHHH--hcCCC---CCceEEEe
Q psy7980 11 LLRAQL------PNQQRTSVHIRKGQTLLEALSKAMK--LRNLK---PEMCTAYD 54 (93)
Q Consensus 11 ~irv~L------Pn~QrT~V~vrpG~tlrdaL~Kalk--~R~L~---~~~C~Vy~ 54 (93)
.++||. ||+|...|.+-++.|++|.+...+. +-|+. ++.-..+.
T Consensus 23 ~~~~~~~~~~~~~~~~~k~v~~d~~ttV~dVi~~i~~~~kiG~~i~~~~~FgL~~ 77 (392)
T 4eku_A 23 ILKVCFYSNSFNPGKNFKLVKCTVQTEIREIITSILLSGRIGPNIRLAECYGLRL 77 (392)
T ss_dssp EEEEEECCSSSCGGGEEEEEEEETTCBHHHHHHHHHHTTTTCSSCCCGGGEEEEE
T ss_pred eEEEEecccccCCCCCeEEEEeCCCCcHHHHHHHHHHHhhcCCCcCccceEEEEE
Confidence 588888 9999999999999999999999984 44653 33444443
No 90
>2h6l_A Hypothetical protein; NESG GR103, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.00A {Archaeoglobus fulgidus} SCOP: d.290.1.3
Probab=47.33 E-value=20 Score=24.02 Aligned_cols=30 Identities=7% Similarity=0.246 Sum_probs=25.5
Q ss_pred CCeeeEEecCCCcHHHHHHHHHHhcCCCCC
Q psy7980 19 QQRTSVHIRKGQTLLEALSKAMKLRNLKPE 48 (93)
Q Consensus 19 ~QrT~V~vrpG~tlrdaL~Kalk~R~L~~~ 48 (93)
++.-.+.+.||..|.++|.+.++.+|+.--
T Consensus 9 gr~~~lrl~~Gedl~~~i~~~~~~~~i~~a 38 (146)
T 2h6l_A 9 GKGFLLRLDYGKDLVRQIEEFLEEKGIHAA 38 (146)
T ss_dssp CEEEEEECCTTSBHHHHHHHHHHHHTCCSE
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHcCCCEE
Confidence 345678999999999999999999997643
No 91
>1t3q_A Quinoline 2-oxidoreductase small subunit; QOR, molybdenum, MCD; HET: FAD MCN; 1.80A {Pseudomonas putida} SCOP: a.56.1.1 d.15.4.2
Probab=46.58 E-value=15 Score=25.38 Aligned_cols=63 Identities=16% Similarity=0.082 Sum_probs=37.4
Q ss_pred eEEEEcCCCCeeeEEecCCCcHHHHHHHHHHhcCC-------CCCceEEEeCCCCcccccCCCCCCcCCcee
Q psy7980 11 LLRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNL-------KPEMCTAYDSNTGVSLQWDTDSDHLPTTEI 75 (93)
Q Consensus 11 ~irv~LPn~QrT~V~vrpG~tlrdaL~Kalk~R~L-------~~~~C~Vy~~~~~~~i~wdtD~~~L~~eEl 75 (93)
.+.+.+ |++...+++.||+||-|+|...+...|. ..-.|.|-..+ +...+=-+-+..+.|.+|
T Consensus 11 ~i~~~i-ng~~~~~~v~~~~tlL~~Lr~~~gl~g~~~~C~~G~CGaC~V~vdG-~~v~sC~~~~~~~~G~~v 80 (168)
T 1t3q_A 11 RISATI-NGKPRVFYVEPRMHLADALREVVGLTGTKIGCEQGVCGSCTILIDG-APMRSCLTLAVQAEGCSI 80 (168)
T ss_dssp EEEEEE-TTEEEEEEECTTSBHHHHHHHTTCCTTSCCSCSSSSSCTTEEEETT-EEEEGGGSBGGGGTTCEE
T ss_pred eEEEEE-CCEEEEEecCCCCcHHHHHHhcCCCCccccCCCCCCCCCcEEEECC-CEeechhhHHHHhCCCeE
Confidence 466666 7778888999999999999875432222 12356777743 222233333333445544
No 92
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=46.46 E-value=50 Score=20.44 Aligned_cols=47 Identities=11% Similarity=0.030 Sum_probs=39.0
Q ss_pred CceEEEEcCCCCeeeEEecCCCcHHHHHHHHHHhcCCCCCceEEEeC
Q psy7980 9 GILLRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKPEMCTAYDS 55 (93)
Q Consensus 9 ~~~irv~LPn~QrT~V~vrpG~tlrdaL~Kalk~R~L~~~~C~Vy~~ 55 (93)
...|+|--+++....+.|++-.++.....+..+++|+.++....+-.
T Consensus 17 ~i~ikV~~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fd 63 (93)
T 2d07_B 17 HINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFD 63 (93)
T ss_dssp EEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHHHTCCGGGEEEEET
T ss_pred eEEEEEECCCCCEEEEEEccCCHHHHHHHHHHHHhCCCccceEEEEC
Confidence 44677777888888899999999999999999999999986554443
No 93
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=45.20 E-value=39 Score=18.78 Aligned_cols=44 Identities=7% Similarity=0.076 Sum_probs=35.3
Q ss_pred eEEEEcCCCCeeeEEecCCCcHHHHHHHHHHhcCCCCCceEEEe
Q psy7980 11 LLRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKPEMCTAYD 54 (93)
Q Consensus 11 ~irv~LPn~QrT~V~vrpG~tlrdaL~Kalk~R~L~~~~C~Vy~ 54 (93)
.|.|-.++++...+++.+..|+.+--.+.-+.-|++++.-..+.
T Consensus 2 ~i~vk~~~g~~~~i~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~ 45 (76)
T 3a9j_A 2 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 45 (76)
T ss_dssp EEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEE
T ss_pred EEEEEcCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEE
Confidence 35666788888889999999999988888888899888444433
No 94
>3hwu_A Putative DNA-binding protein; YP_299413.1, structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.30A {Ralstonia eutropha}
Probab=45.13 E-value=26 Score=23.59 Aligned_cols=31 Identities=13% Similarity=0.249 Sum_probs=27.4
Q ss_pred CCeeeEEecCCCcHHHHHHHHHHhcCCCCCc
Q psy7980 19 QQRTSVHIRKGQTLLEALSKAMKLRNLKPEM 49 (93)
Q Consensus 19 ~QrT~V~vrpG~tlrdaL~Kalk~R~L~~~~ 49 (93)
+..-.+-++||..|.++|.+.++..|+.--.
T Consensus 12 g~~~~~rL~~Gedl~~~l~~~~~~~~i~~a~ 42 (147)
T 3hwu_A 12 PTGYLMVLRHGDNVLQNLEQLARDEHIPSAS 42 (147)
T ss_dssp TTEEEEEEETTCBHHHHHHHHHHHTTCSEEE
T ss_pred CCEEEEEECCCChHHHHHHHHHHHcCCCEEE
Confidence 6678889999999999999999999997653
No 95
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=45.08 E-value=61 Score=21.06 Aligned_cols=47 Identities=6% Similarity=0.025 Sum_probs=39.5
Q ss_pred CceEEEEcCCCCeeeEEecCCCcHHHHHHHHHHhcCCCCCceEEEeC
Q psy7980 9 GILLRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKPEMCTAYDS 55 (93)
Q Consensus 9 ~~~irv~LPn~QrT~V~vrpG~tlrdaL~Kalk~R~L~~~~C~Vy~~ 55 (93)
...|+|--.++....+.|++..++.....+-.+++|++++.....-.
T Consensus 26 ~I~IkVk~~~g~~i~fkVk~~t~l~kL~~ay~ek~gi~~~~~rfiFd 72 (110)
T 2k8h_A 26 LVAVKVVNADGAEMFFRIKSRTALKKLIDTYCKKQGISRNSVRFLFD 72 (110)
T ss_dssp CEEEEEEETTSCCEEEEECTTSSHHHHHHHHHHHHTCCSSSCEEESS
T ss_pred eEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEEC
Confidence 45688887888888999999999999999999999999996554443
No 96
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=43.95 E-value=57 Score=20.36 Aligned_cols=48 Identities=10% Similarity=0.093 Sum_probs=39.0
Q ss_pred CCCceEEEEcC---CCCeeeEEecC-CCcHHHHHHHHHHhcCCCCC-ceEEEe
Q psy7980 7 PRGILLRAQLP---NQQRTSVHIRK-GQTLLEALSKAMKLRNLKPE-MCTAYD 54 (93)
Q Consensus 7 p~~~~irv~LP---n~QrT~V~vrp-G~tlrdaL~Kalk~R~L~~~-~C~Vy~ 54 (93)
|....|.|-.| +++...+.|.| ..|+.+-=.+.-+.-|++++ +-.+|.
T Consensus 25 ~~~i~i~Vk~~~~~~g~~~~l~v~~l~~TV~~LK~~I~~~~gip~~~QrL~~~ 77 (111)
T 1we6_A 25 PGPATIRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGK 77 (111)
T ss_dssp CSCEEEEECCTTCSSSCCEEEEESCSSSBHHHHHHHHHHHTTCCTTTSEEECS
T ss_pred CCcEEEEEEecccCCCcEEEEEecCCCCcHHHHHHHHHHHHCCCHHHeEEEEC
Confidence 33456888888 78888899998 99999988888889999888 555554
No 97
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=43.60 E-value=59 Score=20.46 Aligned_cols=48 Identities=13% Similarity=0.135 Sum_probs=37.6
Q ss_pred CCCceEEEEcCCC----------CeeeEEecCCCcHHHHHHHHHHhcCCCCC-ceEEEe
Q psy7980 7 PRGILLRAQLPNQ----------QRTSVHIRKGQTLLEALSKAMKLRNLKPE-MCTAYD 54 (93)
Q Consensus 7 p~~~~irv~LPn~----------QrT~V~vrpG~tlrdaL~Kalk~R~L~~~-~C~Vy~ 54 (93)
|....+.|-.||. +...++|.+..|+.+-=.+.-+.-|+.++ +-.+|.
T Consensus 23 ~~~i~l~V~~p~~~~~~~~~L~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrL~~~ 81 (115)
T 1we7_A 23 KGPVSIKVQVPNMQDKTEWKLNGQGLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYE 81 (115)
T ss_dssp CSCEEEEEEECCCSSSCSSCCSSEEEEEEECSCSBTHHHHHHHHHHSSCCTTTEEEEET
T ss_pred CCCEEEEEEcCCCccccccccCCeEEEEEECCCCCHHHHHHHHHHHHCCChHHEEEEEC
Confidence 3345688889983 45678999999999988888889999888 555554
No 98
>1qw2_A Conserved hypothetical protein TA1206; structural genomics, beta/alpha, antiparallel beta sandwich, protein structure initiative; 1.50A {Thermoplasma acidophilum} SCOP: d.249.1.1
Probab=42.43 E-value=6.6 Score=26.31 Aligned_cols=15 Identities=33% Similarity=0.501 Sum_probs=12.7
Q ss_pred EEecCCCcHHHHHHH
Q psy7980 24 VHIRKGQTLLEALSK 38 (93)
Q Consensus 24 V~vrpG~tlrdaL~K 38 (93)
.-+++||+.+|||.|
T Consensus 86 lGI~~GM~g~eAL~k 100 (102)
T 1qw2_A 86 VGINPGDVLRNVIDK 100 (102)
T ss_dssp TTCCTTCBHHHHGGG
T ss_pred hCCCCCCCHHHHHHh
Confidence 357899999999986
No 99
>1kf6_B Fumarate reductase iron-sulfur protein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.1.2.1 d.15.4.2 PDB: 1kfy_B* 1l0v_B* 2b76_B* 3cir_B* 3p4p_B* 3p4q_B* 3p4r_B* 3p4s_B*
Probab=41.72 E-value=37 Score=23.87 Aligned_cols=63 Identities=16% Similarity=0.086 Sum_probs=38.3
Q ss_pred CeeeEEecCCCcHHHHHHHHHHh--------cCC---CCCceEEEeCCCCcccccCCCCCCcCC---ceeEEEeeccccc
Q psy7980 20 QRTSVHIRKGQTLLEALSKAMKL--------RNL---KPEMCTAYDSNTGVSLQWDTDSDHLPT---TEIRVEVMEGNLA 85 (93)
Q Consensus 20 QrT~V~vrpG~tlrdaL~Kalk~--------R~L---~~~~C~Vy~~~~~~~i~wdtD~~~L~~---eEl~Ve~ld~~p~ 85 (93)
|...|++.+|+||-|||.++-.. .+. ..-.|.|-..|. ... -+.++.. +++.||-++.+|.
T Consensus 24 ~~~~~~~~~~~tll~al~~~~~~~~p~l~~~~~c~~G~Cg~C~v~v~G~-~~~----aC~~~~~~~~~~~~i~~l~~~~~ 98 (243)
T 1kf6_B 24 AFYEVPYDATTSLLDALGYIKDNLAPDLSYRWSCRMAICGSCGMMVNNV-PKL----ACKTFLRDYTDGMKVEALANFPI 98 (243)
T ss_dssp EEEEEEECTTCBHHHHHHHHHHHTCTTCCCCCCCSSSSSCCCEEEETTE-EEE----GGGCBGGGCTTCEEEECCTTSCE
T ss_pred EEEEEecCCCChHHHHHHHcCcccCCCcccccCCCCCcCCCCEeEECCE-EEe----eeeeEHhhCCCcEEEEecCCCCc
Confidence 56778999999999999886421 122 222577776442 111 2233322 2488898888875
Q ss_pred cc
Q psy7980 86 LS 87 (93)
Q Consensus 86 ~~ 87 (93)
++
T Consensus 99 ~k 100 (243)
T 1kf6_B 99 ER 100 (243)
T ss_dssp EE
T ss_pred cc
Confidence 43
No 100
>2p6y_A Hypothetical protein VCA0587; NESG, Q9KM02_vibch, VCR80, structural genomics, PSI-2, prote structure initiative; 1.63A {Vibrio cholerae}
Probab=41.60 E-value=26 Score=23.50 Aligned_cols=30 Identities=7% Similarity=0.223 Sum_probs=25.4
Q ss_pred eeeEEecCCCcHHHHHHHHHHhcCCCCCce
Q psy7980 21 RTSVHIRKGQTLLEALSKAMKLRNLKPEMC 50 (93)
Q Consensus 21 rT~V~vrpG~tlrdaL~Kalk~R~L~~~~C 50 (93)
.-.+.+.||..|.++|.+.++.+|+.--+.
T Consensus 4 ~~~lrL~~Gedl~~~i~~~~~~~~i~~a~v 33 (142)
T 2p6y_A 4 LIALRLTRGMDLKQQIVQLVQQHRIHAGSI 33 (142)
T ss_dssp EEEEEECTTCBHHHHHHHHHHHTTCSSEEE
T ss_pred EEEEEECCCCcHHHHHHHHHHHhCCCEEEE
Confidence 346789999999999999999999865544
No 101
>1wwt_A Threonyl-tRNA synthetase, cytoplasmic; TGS domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ligase; NMR {Homo sapiens}
Probab=40.72 E-value=45 Score=19.90 Aligned_cols=28 Identities=14% Similarity=0.209 Sum_probs=20.8
Q ss_pred CceEEEEcCCCCeeeEEecC-CCcHHHHHHH
Q psy7980 9 GILLRAQLPNQQRTSVHIRK-GQTLLEALSK 38 (93)
Q Consensus 9 ~~~irv~LPn~QrT~V~vrp-G~tlrdaL~K 38 (93)
+..+.|.|||++ ..++.. |.|+.|.+..
T Consensus 9 ~~~i~I~lpdG~--~~~~~~~~~T~~dia~~ 37 (88)
T 1wwt_A 9 SKPIKVTLPDGK--QVDAESWKTTPYQIACG 37 (88)
T ss_dssp CCEEEEECTTSC--EEEEETTTCCHHHHHHH
T ss_pred CCCEEEEECCCC--EEEcccCCCCHHHHHHH
Confidence 346899999985 356666 8999996543
No 102
>3ddc_B RAS association domain-containing family protein; oncogene, tumorsuppressor, ubiquitin fold, RAS effector, RAP rassf1, rassf5, RAPL, NORE1, GMPPNP; HET: GNP; 1.80A {Mus musculus}
Probab=40.64 E-value=17 Score=26.18 Aligned_cols=42 Identities=17% Similarity=0.244 Sum_probs=34.9
Q ss_pred EEEcCCCCeeeEEecCCCcHHHHHHHHHHhcCC--CCCceEEEe
Q psy7980 13 RAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNL--KPEMCTAYD 54 (93)
Q Consensus 13 rv~LPn~QrT~V~vrpG~tlrdaL~Kalk~R~L--~~~~C~Vy~ 54 (93)
-+|||.+.-+.|.|..-+|.++.|.-.|++=.. .|+.=+.|.
T Consensus 80 SfflP~gs~k~v~VsS~tTt~eVI~~LL~KFkV~dnP~kFALye 123 (163)
T 3ddc_B 80 SFYLPLDAIKQMHISSTTTVSEVIQGLLDKFMVVDNPQKFALFK 123 (163)
T ss_dssp CEEEEEEEEEEEEEETTCCHHHHHHHHHHHTTCCSCGGGEEEEE
T ss_pred eEECCCCceEEEEEccCCcHHHHHHHHHHHhcccCChhheEEEE
Confidence 489999999999999999999999999998765 344445554
No 103
>2bye_A Phospholipase C, epsilon 1; RAS association domain, ubiquitin superfold; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=39.76 E-value=30 Score=23.33 Aligned_cols=44 Identities=9% Similarity=-0.004 Sum_probs=36.2
Q ss_pred eEEEE--cCCCCeeeEEecCCCcHHHHHHHHHHhcCCCCC-ceEEEe
Q psy7980 11 LLRAQ--LPNQQRTSVHIRKGQTLLEALSKAMKLRNLKPE-MCTAYD 54 (93)
Q Consensus 11 ~irv~--LPn~QrT~V~vrpG~tlrdaL~Kalk~R~L~~~-~C~Vy~ 54 (93)
+++|| .|++-.|++.+-.+-|.+|-|..||.+.+...+ .+..+.
T Consensus 11 ~v~V~gv~~~ePftI~~~~~~STAkdvl~qaL~ka~~~~~~~~~YvL 57 (110)
T 2bye_A 11 RVTVHGVPGPEPFTVFTINGGTKAKQLLQQILTNEQDIKPVTTDYFL 57 (110)
T ss_dssp EEEESSCSSSSSSEEEECCTTCCHHHHHHHHHCCSSSSCCCCCSEEE
T ss_pred EEEEcCCCCCCCcEEEEecCCCcHHHHHHHHHHHhcCCCCCcccEEE
Confidence 57776 688889999999999999999999999998644 444444
No 104
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=39.55 E-value=55 Score=18.91 Aligned_cols=47 Identities=9% Similarity=0.221 Sum_probs=38.8
Q ss_pred CceEEEEcCCCCeeeEEecCCCcHHHHHHHHHHhcCCCCC-ceEEEeC
Q psy7980 9 GILLRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKPE-MCTAYDS 55 (93)
Q Consensus 9 ~~~irv~LPn~QrT~V~vrpG~tlrdaL~Kalk~R~L~~~-~C~Vy~~ 55 (93)
...|.|-.++++...++|.+-.|+.+--.+.-++-|++++ +-.+|.+
T Consensus 12 ~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G 59 (88)
T 3dbh_I 12 SMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSG 59 (88)
T ss_dssp CEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETT
T ss_pred cEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcCHHHEEEEECC
Confidence 3467787789988899999999999999999999999888 5555543
No 105
>2dt4_A Hypothetical protein PH0802; PPC domain, structural genomics, unknown function; 1.60A {Pyrococcus horikoshii}
Probab=38.60 E-value=25 Score=23.41 Aligned_cols=30 Identities=13% Similarity=0.233 Sum_probs=25.5
Q ss_pred CCeeeEEecCCCcHHHHHHHHHHhcCCCCC
Q psy7980 19 QQRTSVHIRKGQTLLEALSKAMKLRNLKPE 48 (93)
Q Consensus 19 ~QrT~V~vrpG~tlrdaL~Kalk~R~L~~~ 48 (93)
+..-.+.+.||..|.++|.+.++.+|+.--
T Consensus 9 gr~~~lrl~~Gedl~~~i~~~~~~~~i~~a 38 (143)
T 2dt4_A 9 GRTYLFRVPEGEELLTYIKNFCKKEGIETA 38 (143)
T ss_dssp EEEEEEEECTTCBHHHHHHHHHHHHTCCSE
T ss_pred CCEEEEEECCCCcHHHHHHHHHHHcCCCEE
Confidence 345678999999999999999999997653
No 106
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=38.52 E-value=66 Score=19.53 Aligned_cols=47 Identities=9% Similarity=0.152 Sum_probs=38.9
Q ss_pred CceEEEEcCCCCeeeEEecCCCcHHHHHHHHHHhcCCCCC-ceEEEeC
Q psy7980 9 GILLRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKPE-MCTAYDS 55 (93)
Q Consensus 9 ~~~irv~LPn~QrT~V~vrpG~tlrdaL~Kalk~R~L~~~-~C~Vy~~ 55 (93)
...|.|-.++++...+.|.+..|+.+--.+.-++-|+.++ +-.+|.+
T Consensus 22 ~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~G 69 (98)
T 4hcn_B 22 PMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAG 69 (98)
T ss_dssp CCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETT
T ss_pred eEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECC
Confidence 4467788789999999999999999999999999999888 5555543
No 107
>3htn_A Putative DNA binding protein; DUF269 family protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE 1PE; 1.50A {Bacteroides thetaiotaomicron vpi-5482} SCOP: d.290.1.0
Probab=38.46 E-value=35 Score=23.03 Aligned_cols=33 Identities=15% Similarity=0.143 Sum_probs=28.1
Q ss_pred CCCCeeeEEecCCCcHHHHHHHHHHhcCCCCCc
Q psy7980 17 PNQQRTSVHIRKGQTLLEALSKAMKLRNLKPEM 49 (93)
Q Consensus 17 Pn~QrT~V~vrpG~tlrdaL~Kalk~R~L~~~~ 49 (93)
-.+..-.+.+.||.-|.++|.+.++.+|+.--.
T Consensus 13 ~~gr~~~lrl~~Gedl~~~l~~~~~~~~i~~a~ 45 (149)
T 3htn_A 13 KIGNKYIVSINNHTEIVKALNAFCKEKGILSGS 45 (149)
T ss_dssp EETTEEEEEECTTCBHHHHHHHHHHHHTCCSEE
T ss_pred ecCCEEEEEECCCChHHHHHHHHHHHcCCcEEE
Confidence 346677899999999999999999999987543
No 108
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=37.77 E-value=75 Score=19.95 Aligned_cols=47 Identities=6% Similarity=0.162 Sum_probs=38.9
Q ss_pred CceEEEEcCCCCeeeEEecCCCcHHHHHHHHHHhcCCCCC-ceEEEeC
Q psy7980 9 GILLRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKPE-MCTAYDS 55 (93)
Q Consensus 9 ~~~irv~LPn~QrT~V~vrpG~tlrdaL~Kalk~R~L~~~-~C~Vy~~ 55 (93)
...|.|-.++++...+.|.+..|+.+-=.+.-++-|++++ +..+|.+
T Consensus 35 ~m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~G 82 (111)
T 3vdz_A 35 AMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAG 82 (111)
T ss_dssp CEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETT
T ss_pred cEEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCChHHEEEEECC
Confidence 3457787889999999999999999988888888899887 5566654
No 109
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=37.67 E-value=60 Score=18.81 Aligned_cols=48 Identities=13% Similarity=0.058 Sum_probs=38.4
Q ss_pred CCCceEEEEcCCCCeeeEEecCCCcHHHHHHHHHHhcCCCCCceEEEe
Q psy7980 7 PRGILLRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKPEMCTAYD 54 (93)
Q Consensus 7 p~~~~irv~LPn~QrT~V~vrpG~tlrdaL~Kalk~R~L~~~~C~Vy~ 54 (93)
|....|.|--++++...++|.+..|+.+--.+.-+.-|++++.-..+.
T Consensus 5 ~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~ 52 (87)
T 1wh3_A 5 SSGIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEF 52 (87)
T ss_dssp SSSEEEEEEETTTEEEEEEECSSSBHHHHHHHHHHHTCCCTTTEEEEE
T ss_pred CCCEEEEEEcCCCCEEEEEeCCCChHHHHHHHHHHHhCCChHHEEEEE
Confidence 335567777788888889999999999998888899999988544443
No 110
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=37.47 E-value=1.1e+02 Score=21.67 Aligned_cols=69 Identities=9% Similarity=0.023 Sum_probs=47.1
Q ss_pred EEEEcCCCC--eeeEEecCCCcHHHHHHHHHHhcCCCCC-ceEEEe-CCCCcccccCCC------CCCcCCceeEEEee
Q psy7980 12 LRAQLPNQQ--RTSVHIRKGQTLLEALSKAMKLRNLKPE-MCTAYD-SNTGVSLQWDTD------SDHLPTTEIRVEVM 80 (93)
Q Consensus 12 irv~LPn~Q--rT~V~vrpG~tlrdaL~Kalk~R~L~~~-~C~Vy~-~~~~~~i~wdtD------~~~L~~eEl~Ve~l 80 (93)
++++.-++. ..++.+....|+++-+.++.+.-++.++ .+-++. .+.....-++.+ +.-..|++|.+|+.
T Consensus 130 l~l~~~~~~~~~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~Q~illE~r 208 (217)
T 4a3p_A 130 LKLCENGNMNNVVTRRFSKADTIDTIEKEIRKIFSIPDEKETRLWNKYMSNTFEPLNKPDSTIQDAGLYQGQVLVIEQK 208 (217)
T ss_dssp EEEEETTEEEEEEEEEECTTSBHHHHHHHHHHHTTCCTTSCEEEEEEEETTEEEECCCTTSBHHHHTCCTTCEEEEEEC
T ss_pred EEEEecCCCCcceEEEEcccchHHHHHHHHHHHhCCCCCCceEEEEecCCCCeeecCCCCCCHHHhCCCCCCEEEEEEe
Confidence 444443332 3457778999999999999999999997 799988 222223333332 23335999999986
No 111
>4gdk_B Autophagy protein 5; protein-protein conjugate, protein-protein complex, ubiquiti protein, E3 ligase, ubiquitin-like fold; 2.70A {Homo sapiens} PDB: 4gdl_B
Probab=37.45 E-value=25 Score=26.66 Aligned_cols=32 Identities=19% Similarity=0.138 Sum_probs=22.8
Q ss_pred eEEEEcCCCCeeeEEe--cC------CCcHHHHHHHHHHh
Q psy7980 11 LLRAQLPNQQRTSVHI--RK------GQTLLEALSKAMKL 42 (93)
Q Consensus 11 ~irv~LPn~QrT~V~v--rp------G~tlrdaL~Kalk~ 42 (93)
=+|+|+|..+++.++. +| ..||.|+|...|..
T Consensus 186 PvRiY~~~~~~~~iQ~~v~p~~~~g~~~TLg~~L~~~lP~ 225 (275)
T 4gdk_B 186 PFRIYQTTTERPFIQKLFRPVAADGQLHTLGDLLKEVCPS 225 (275)
T ss_dssp CEEEECTTSSSSEECCCCCSBCTTSCBCBHHHHHHHHCGG
T ss_pred eEEEEecCCCCCccccCcCCcCCCCCcccHHHHHHHhccc
Confidence 3999998544555553 22 47999999998854
No 112
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=37.12 E-value=84 Score=20.31 Aligned_cols=46 Identities=13% Similarity=0.040 Sum_probs=38.0
Q ss_pred CceEEEEcCCCCeeeEEecCCCcHHHHHHHHHHhcCCCCCceEEEeC
Q psy7980 9 GILLRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKPEMCTAYDS 55 (93)
Q Consensus 9 ~~~irv~LPn~QrT~V~vrpG~tlrdaL~Kalk~R~L~~~~C~Vy~~ 55 (93)
...|+|-- ++....+.+++..++.....+-.++.|+.++.+..+-.
T Consensus 31 ~I~IkV~~-~g~~i~fkIk~tt~l~kL~~ay~ek~gi~~~~~rF~Fd 76 (106)
T 2eke_C 31 HINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYD 76 (106)
T ss_dssp EEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEET
T ss_pred eEEEEEec-CCcEEEEEeCCCCHHHHHHHHHHHHhCCCcccEEEEEC
Confidence 34577777 88888899999999999999999999999986655543
No 113
>1krh_A Benzoate 1,2-dioxygenase reductase; alpha-beta, FAD-binding, ferredoxin, NADH-binding, oxidoreductase; HET: FAD; 1.50A {Acinetobacter SP} SCOP: b.43.4.2 c.25.1.2 d.15.4.2
Probab=36.86 E-value=38 Score=24.61 Aligned_cols=44 Identities=20% Similarity=0.298 Sum_probs=30.3
Q ss_pred eEEEEcCCCCeeeEEecCCCcHHHHHHHHH-Hh----cCCCCCceEEEe
Q psy7980 11 LLRAQLPNQQRTSVHIRKGQTLLEALSKAM-KL----RNLKPEMCTAYD 54 (93)
Q Consensus 11 ~irv~LPn~QrT~V~vrpG~tlrdaL~Kal-k~----R~L~~~~C~Vy~ 54 (93)
.|.+.-++++...+++.+|.||-||+.++= .. |+=.+..|.|+.
T Consensus 5 ~v~~~~~~~~~~~~~~~~g~tll~a~~~~gi~i~~~C~~g~Cg~C~v~v 53 (338)
T 1krh_A 5 QVALQFEDGVTRFICIAQGETLSDAAYRQQINIPMDCREGECGTCRAFC 53 (338)
T ss_dssp EEEEECTTSCEEEEEECTTCCHHHHHHHTTCCCSCSCSSSSSCTTEEEE
T ss_pred EEEEEEcCCCcEEEEeCCCCcHHHHHHHcCCCcccCCCCcCCCCCEEEE
Confidence 356666777788999999999999986540 00 122455688887
No 114
>3hrd_D Nicotinate dehydrogenase small FES subunit; selenium ligand, iron, iron-sulfur, metal-binding, oxidoreductase; HET: MCN FAD; 2.20A {Eubacterium barkeri}
Probab=35.74 E-value=21 Score=24.96 Aligned_cols=63 Identities=16% Similarity=0.161 Sum_probs=37.8
Q ss_pred CCCCeeeEEecCCCcHHHHHHHHHHhcCC-------CCCceEEEeCCCCcccccCCCCCCcCCcee-EEEee
Q psy7980 17 PNQQRTSVHIRKGQTLLEALSKAMKLRNL-------KPEMCTAYDSNTGVSLQWDTDSDHLPTTEI-RVEVM 80 (93)
Q Consensus 17 Pn~QrT~V~vrpG~tlrdaL~Kalk~R~L-------~~~~C~Vy~~~~~~~i~wdtD~~~L~~eEl-~Ve~l 80 (93)
-|++...+++.|++||-|+|...+..-|. ..-.|.|...+. ...+=-+-+..+.|.|| .||=+
T Consensus 10 vNG~~~~v~v~p~~tLLd~LR~~lgltgtk~gC~~G~CGACtV~vdG~-~v~sC~~~~~~~~G~~I~TiEgl 80 (160)
T 3hrd_D 10 LNGEARSIVTEPNKRLLDLLREDFGLTSVKEGCSEGECGACTVIFNGD-PVTTCCMLAGQADESTIITLEGV 80 (160)
T ss_dssp ETTEEEEEEECSSSBHHHHHHTTSCCTTSCCSSSSSSSCTTEEEETTE-EEEGGGSBGGGGTTEEEECGGGT
T ss_pred ECCEEEEEecCCCCCHHHHHHHhcCCCccccccCCCCCCCCEEEECCE-EEEchhhhhhhhCCCceEEeCCC
Confidence 58888889999999999999754432222 233677777532 22233333444456665 34444
No 115
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A
Probab=34.69 E-value=89 Score=19.91 Aligned_cols=53 Identities=11% Similarity=-0.016 Sum_probs=37.4
Q ss_pred ceEEEEcCCCCeeeEEecCCCcHHHHHHHHHHhcCCCCCceEEEeCCCCcccc
Q psy7980 10 ILLRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKPEMCTAYDSNTGVSLQ 62 (93)
Q Consensus 10 ~~irv~LPn~QrT~V~vrpG~tlrdaL~Kalk~R~L~~~~C~Vy~~~~~~~i~ 62 (93)
..|++=||||.|-.-.+....||.|.-.=.-..++.....-..+..-.++.+.
T Consensus 14 t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~f~L~t~fPrk~l~ 66 (109)
T 2dzk_A 14 ARIQFRLPDGSSFTNQFPSDAPLEEARQFAAQTVGNTYGNFSLATMFPRREFT 66 (109)
T ss_dssp EEEEEECSSSCEEEEEECTTSBHHHHHHHHHHHHTTSSCSCEEECSSSCCBCC
T ss_pred EEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhccCCCCCceEEEcCCCCcCCc
Confidence 36999999999999999999999888776666666544444444433344444
No 116
>2dyo_A Autophagy protein 5; ubiquitin-fold, herix-bundle, protein turnover/protein turnover complex; 1.97A {Saccharomyces cerevisiae} PDB: 2dym_A
Probab=34.51 E-value=22 Score=27.18 Aligned_cols=33 Identities=18% Similarity=-0.028 Sum_probs=21.2
Q ss_pred CceEEEEcCCCC--eeeEEe--cCC---CcHHHHH--HHHHH
Q psy7980 9 GILLRAQLPNQQ--RTSVHI--RKG---QTLLEAL--SKAMK 41 (93)
Q Consensus 9 ~~~irv~LPn~Q--rT~V~v--rpG---~tlrdaL--~Kalk 41 (93)
..=+|+|+|++. ..+++. .+| +||.|+| ...+.
T Consensus 202 ~IPvRIy~~~~~~~~~~iqp~~~~~~~~~TLgd~L~~~~~lp 243 (297)
T 2dyo_A 202 HIPLIIQTSRTSGTFRISQPTISMTGVNPTLKDIEGDILDVK 243 (297)
T ss_dssp BCCEEEECCSSSSSCCEECCCCBCTTCCCBTGGGHHHHSCTT
T ss_pred eeeEEEEecCCCCceeeeecccCCCCCCcCHHHHHhhhhhcc
Confidence 345999999984 234443 333 3999999 44444
No 117
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=34.24 E-value=76 Score=18.96 Aligned_cols=52 Identities=8% Similarity=-0.001 Sum_probs=36.6
Q ss_pred CceEEEEcCCCCeeeEEecCCCcHHHHHHHHHHhcCCCCCceEEEeCCCCccc
Q psy7980 9 GILLRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKPEMCTAYDSNTGVSL 61 (93)
Q Consensus 9 ~~~irv~LPn~QrT~V~vrpG~tlrdaL~Kalk~R~L~~~~C~Vy~~~~~~~i 61 (93)
.-.|++-||||++-.-.+.+.-||.+...-.-. .+..+........-.++.+
T Consensus 7 ~~~i~iRlpdG~r~~~~F~~~~tl~~v~~fv~~-~~~~~~~f~L~t~fPrk~l 58 (84)
T 3qx1_A 7 VSKLRIRTPSGEFLERRFLASNKLQIVFDFVAS-KGFPWDEYKLLSTFPRRDV 58 (84)
T ss_dssp EEEEEEECTTSCEEEEEEETTSBHHHHHHHHHH-TTCCTTTEEEECSSSCCBG
T ss_pred eEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHH-cCCCCCCeEEEeCCCCCCC
Confidence 346899999999999999999999876664444 5555555555554333444
No 118
>3p42_A Predicted protein; beta-grAsp, unknown function; HET: MSE; 1.91A {Escherichia coli O127}
Probab=33.71 E-value=19 Score=26.37 Aligned_cols=29 Identities=14% Similarity=0.300 Sum_probs=24.7
Q ss_pred ceEEEEcCCCCeeeEEecCCCcHHHHHHHH
Q psy7980 10 ILLRAQLPNQQRTSVHIRKGQTLLEALSKA 39 (93)
Q Consensus 10 ~~irv~LPn~QrT~V~vrpG~tlrdaL~Ka 39 (93)
+.|-|++|+++.+ ..+..|.+|.|.|..+
T Consensus 4 ~~v~v~~~g~~~~-~~i~~~eRLsdll~ra 32 (236)
T 3p42_A 4 GMVTIYLPGEQQT-LSVGPVENVAQLVTQP 32 (236)
T ss_dssp EEEEEECTTSSCE-EEEEEESBHHHHHTCT
T ss_pred eeEEEEECCCcee-EeeCCCCcHHHHHhhc
Confidence 4789999999866 7999999999988754
No 119
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=33.71 E-value=79 Score=19.00 Aligned_cols=44 Identities=7% Similarity=0.076 Sum_probs=35.7
Q ss_pred eEEEEcCCCCeeeEEecCCCcHHHHHHHHHHhcCCCCCceEEEe
Q psy7980 11 LLRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKPEMCTAYD 54 (93)
Q Consensus 11 ~irv~LPn~QrT~V~vrpG~tlrdaL~Kalk~R~L~~~~C~Vy~ 54 (93)
.|.|-.++++...+.|.+..|+.+--.+.-+.-|++++.-..+.
T Consensus 2 ~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gi~~~~qrL~~ 45 (98)
T 1yx5_B 2 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 45 (98)
T ss_dssp EEEEEETTSCEEEEECCTTCBHHHHHHHHHHHTCCCGGGEEEEE
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEE
Confidence 36677789988889999999999988888888999888444443
No 120
>2hx0_A Putative DNA-binding protein; NESG, PSI-2, SCR59, structural genomics, protein structure initiative; 1.55A {Salmonella choleraesuis} SCOP: d.290.1.3 PDB: 2nmu_A
Probab=33.16 E-value=45 Score=22.63 Aligned_cols=30 Identities=13% Similarity=0.223 Sum_probs=25.4
Q ss_pred eeeEEecCCCcHHHHHHHHHHhcCCCCCce
Q psy7980 21 RTSVHIRKGQTLLEALSKAMKLRNLKPEMC 50 (93)
Q Consensus 21 rT~V~vrpG~tlrdaL~Kalk~R~L~~~~C 50 (93)
.-.+.+.||..|.++|.+.++.+|+.--+.
T Consensus 20 ~~vlrL~~Gedl~~~i~~~~~~~gi~~a~v 49 (154)
T 2hx0_A 20 FYALRLLPGQEVFSQLHAFVQQNQLRAAWI 49 (154)
T ss_dssp EEEEEECTTCBHHHHHHHHHHHHTCSSEEE
T ss_pred EEEEEECCCCcHHHHHHHHHHHhCCCEEEE
Confidence 346799999999999999999999866544
No 121
>3c4i_A DNA-binding protein HU homolog; dimerization by four helix bundle interaction, DNA condensat binding; 2.04A {Mycobacterium tuberculosis}
Probab=32.93 E-value=25 Score=22.06 Aligned_cols=24 Identities=13% Similarity=0.194 Sum_probs=19.3
Q ss_pred EEEcCCCCeeeEEecCCCcHHHHHHH
Q psy7980 13 RAQLPNQQRTSVHIRKGQTLLEALSK 38 (93)
Q Consensus 13 rv~LPn~QrT~V~vrpG~tlrdaL~K 38 (93)
.+..|. +.+|.++||..|++++.+
T Consensus 68 ~i~i~a--~~~v~Fkp~k~Lk~~v~~ 91 (99)
T 3c4i_A 68 TVKVKP--TSVPAFRPGAQFKAVVSG 91 (99)
T ss_dssp EEEECC--EEEEEEEECHHHHHHHHT
T ss_pred EEEecC--CccEEEEECHHHHHHHhc
Confidence 344564 899999999999999873
No 122
>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2
Probab=32.69 E-value=96 Score=19.66 Aligned_cols=70 Identities=17% Similarity=0.041 Sum_probs=43.6
Q ss_pred eEEEEcCCCCeeeEEecCCCcHHHHHHHHHHhcCCCCCceEEEeCCCCcccccCCCCC-----CcCCceeEEEeec
Q psy7980 11 LLRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKPEMCTAYDSNTGVSLQWDTDSD-----HLPTTEIRVEVME 81 (93)
Q Consensus 11 ~irv~LPn~QrT~V~vrpG~tlrdaL~Kalk~R~L~~~~C~Vy~~~~~~~i~wdtD~~-----~L~~eEl~Ve~ld 81 (93)
.|++=||||+|-.-.+..--||.+...= ++..+..+........-.++.+..|.+.+ -....-|.||-+|
T Consensus 25 ~IqiRlpdG~r~~rrF~~~~tl~~v~~f-v~~~~~~~~~f~L~t~fPrk~l~~d~~~TL~e~gL~p~a~L~Ve~~~ 99 (109)
T 2cr5_A 25 TVALRCPNGRVLRRRFFKSWNSQVLLDW-MMKVGYHKSLYRLSTSFPRRALEVEGGSSLEDIGITVDTVLNVEEKE 99 (109)
T ss_dssp EEEEECTTSCEEEEEEESSSBTHHHHHH-HHHHTCCTTTEEEECSSSCCBCCCCSSCBHHHHTCSSCEEEEEEECC
T ss_pred EEEEECCCCCEEEEEeCCCCCHHHHHHH-HHhcCCCCCCeEEEeCCCCcCCCCCCCCCHHHcCCCCCeEEEEEeCC
Confidence 5899999999988899999999865543 33445555555555432334454444432 1124556676654
No 123
>1doi_A 2Fe-2S ferredoxin; halophilic protein, redox protein, iron-sulfur, electron transport; 1.90A {Haloarcula marismortui} SCOP: d.15.4.1 PDB: 1e0z_A* 1e10_A
Probab=31.91 E-value=29 Score=22.96 Aligned_cols=38 Identities=21% Similarity=0.147 Sum_probs=25.4
Q ss_pred cCCCCeeeEEecCCCcHHHHHHHHHHh-----cCCCCCceEEEe
Q psy7980 16 LPNQQRTSVHIRKGQTLLEALSKAMKL-----RNLKPEMCTAYD 54 (93)
Q Consensus 16 LPn~QrT~V~vrpG~tlrdaL~Kalk~-----R~L~~~~C~Vy~ 54 (93)
.+|++ ..+++.+|.||-||+.++=-. |+=....|.|..
T Consensus 33 ~~~g~-~~v~v~~g~tlL~aa~~~Gi~i~~~C~~G~CgtC~v~v 75 (128)
T 1doi_A 33 DDEDY-GSLEVNEGEYILEAAEAQGYDWPFSCRAGACANCAAIV 75 (128)
T ss_dssp CTTTE-EEEECCTTSCHHHHHHHTTCCCCCSSSSSSSSTTEEEE
T ss_pred EeCCc-EEEEECCCCcHHHHHHHcCCCCccCCCccCCCCCEeEE
Confidence 67773 378999999999998654100 222445788876
No 124
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=30.91 E-value=76 Score=17.99 Aligned_cols=28 Identities=18% Similarity=0.229 Sum_probs=21.7
Q ss_pred EEecCCCcHHHHHHHHHHhcCCCCCceEEEeCC
Q psy7980 24 VHIRKGQTLLEALSKAMKLRNLKPEMCTAYDSN 56 (93)
Q Consensus 24 V~vrpG~tlrdaL~Kalk~R~L~~~~C~Vy~~~ 56 (93)
+++ +|.|+.|.|... ++.++.++|+..+
T Consensus 9 ~~~-~~~tv~~ll~~l----~~~~~~v~vavN~ 36 (64)
T 2cu3_A 9 RPL-EGKTLKEVLEEM----GVELKGVAVLLNE 36 (64)
T ss_dssp ECC-TTCCHHHHHHHH----TBCGGGEEEEETT
T ss_pred EEc-CCCcHHHHHHHc----CCCCCcEEEEECC
Confidence 356 899999988754 6778889988853
No 125
>2eel_A Cell death activator CIDE-A; CIDE-N domain, cell death- inducing DFFA-like effector A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.42 E-value=1.1e+02 Score=19.71 Aligned_cols=62 Identities=18% Similarity=0.182 Sum_probs=39.6
Q ss_pred EEEEcCCCCeeeEEecCCCcHHHHHHHHHHhcCCCCCceEEEeCCCCcccccCCC-CCCcCCceeE
Q psy7980 12 LRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKPEMCTAYDSNTGVSLQWDTD-SDHLPTTEIR 76 (93)
Q Consensus 12 irv~LPn~QrT~V~vrpG~tlrdaL~Kalk~R~L~~~~C~Vy~~~~~~~i~wdtD-~~~L~~eEl~ 76 (93)
.||- |..|++=.=.-.-+|+|-+.|++.+-++..+.+.++...+...|+ |.| --+|+.+.+.
T Consensus 12 fkV~--~~~Rs~k~GV~A~sL~EL~~K~~~~l~l~~~~~~lvLeeDGT~Vd-dEeyF~tLp~nT~l 74 (91)
T 2eel_A 12 FRVS--NHDRSSRRGVMASSLQELISKTLDALVIATGLVTLVLEEDGTVVD-TEEFFQTLGDNTHF 74 (91)
T ss_dssp EEEE--CTTSCCCEEEEESSHHHHHHHHHHHTTCSSSCEEEEETTTCCBCC-CHHHHTTSCSSEEE
T ss_pred EEEe--cCCCCeEEeEEcCCHHHHHHHHHHHhcCCCCCcEEEEeeCCcEEe-chhhhhhCCCCCEE
Confidence 3444 555544333345689999999999999977788888865555555 222 3444444443
No 126
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=30.25 E-value=1.1e+02 Score=19.73 Aligned_cols=48 Identities=8% Similarity=0.184 Sum_probs=38.7
Q ss_pred CCceEEEEcCCCCeeeEEecCCCcHHHHHHHHHHhcCCCCC-ceEEEeC
Q psy7980 8 RGILLRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKPE-MCTAYDS 55 (93)
Q Consensus 8 ~~~~irv~LPn~QrT~V~vrpG~tlrdaL~Kalk~R~L~~~-~C~Vy~~ 55 (93)
....|.|--++++...++|.+..|+.+-=.+.-++-|++++ +..+|.+
T Consensus 80 ~~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G 128 (159)
T 3rt3_B 80 EPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEG 128 (159)
T ss_dssp CCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETT
T ss_pred CcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCHHHEEEEECC
Confidence 34456666788899999999999999988888888899988 5666644
No 127
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=29.90 E-value=1e+02 Score=19.17 Aligned_cols=47 Identities=6% Similarity=0.144 Sum_probs=38.0
Q ss_pred CCceEEEEcCCCCeeeEEecCCCcHHHHHHHHHHhcCCCCCc-eEEEe
Q psy7980 8 RGILLRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKPEM-CTAYD 54 (93)
Q Consensus 8 ~~~~irv~LPn~QrT~V~vrpG~tlrdaL~Kalk~R~L~~~~-C~Vy~ 54 (93)
....|.|-.++++...+.|.+-.|+.+--.+.-+.-|+.++. -.+|.
T Consensus 34 ~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~ 81 (111)
T 2ojr_A 34 LAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA 81 (111)
T ss_dssp SCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCTTTEEEEET
T ss_pred CeEEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCcccEEEEEC
Confidence 345677878889888999999999999888888888998884 44554
No 128
>2hj1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; 2.10A {Haemophilus influenzae} SCOP: d.15.3.4
Probab=28.96 E-value=38 Score=21.78 Aligned_cols=40 Identities=13% Similarity=0.172 Sum_probs=24.6
Q ss_pred EcCCCCee-eEEecCCCcHHHHHHHH--HHhc-CCCCCceEEEe
Q psy7980 15 QLPNQQRT-SVHIRKGQTLLEALSKA--MKLR-NLKPEMCTAYD 54 (93)
Q Consensus 15 ~LPn~QrT-~V~vrpG~tlrdaL~Ka--lk~R-~L~~~~C~Vy~ 54 (93)
=+|++|.. .+++.+|.|+.|+|... ...+ .+..+.++|-.
T Consensus 20 a~p~rq~~~~~~v~~g~TV~daI~~~gi~~~~peIdl~~~~V~V 63 (97)
T 2hj1_A 20 AFPERYYLKSFQVDEGITVQTAITQSGILSQFPEIDLSTNKIGI 63 (97)
T ss_dssp EETTEEEEEEEEEETTCBHHHHHHHHTHHHHCTTCCTTTSEEEE
T ss_pred eCCCCCEEEEEEcCCCCcHHHHHHHcCCCccCCcccccccEEEE
Confidence 36776654 36778999999999864 2222 33343445544
No 129
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=28.90 E-value=1.3e+02 Score=19.91 Aligned_cols=47 Identities=6% Similarity=0.149 Sum_probs=38.6
Q ss_pred CceEEEEcCCCCeeeEEecCCCcHHHHHHHHHHhcCCCCC-ceEEEeC
Q psy7980 9 GILLRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKPE-MCTAYDS 55 (93)
Q Consensus 9 ~~~irv~LPn~QrT~V~vrpG~tlrdaL~Kalk~R~L~~~-~C~Vy~~ 55 (93)
.+.|.|-..+++...+.|.+..|+.+-=.+.-++-|+.++ +-.+|.+
T Consensus 20 ~m~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~g 67 (172)
T 3u30_A 20 HMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAG 67 (172)
T ss_dssp CEEEEEEETTTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETT
T ss_pred cEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECC
Confidence 4457777789988899999999999999999999999987 5555543
No 130
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=28.79 E-value=1.6e+02 Score=21.00 Aligned_cols=59 Identities=19% Similarity=0.179 Sum_probs=42.7
Q ss_pred eEEecCCCcHHHHHHHHHHhcCCCCC-ceEEEe-CCCCcccccCC------CCCCcCCceeEEEeec
Q psy7980 23 SVHIRKGQTLLEALSKAMKLRNLKPE-MCTAYD-SNTGVSLQWDT------DSDHLPTTEIRVEVME 81 (93)
Q Consensus 23 ~V~vrpG~tlrdaL~Kalk~R~L~~~-~C~Vy~-~~~~~~i~wdt------D~~~L~~eEl~Ve~ld 81 (93)
++.+...-|+.+-+.++++.-++.++ .+-++. ...+...-++. |+.-..|++|.+|+..
T Consensus 155 ~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RLW~~~~~~~~~~L~~~~~tl~d~~L~~~Q~illE~r~ 221 (231)
T 3jyu_A 155 SCHFSKADTIATIEKEMRKLFNIPAERETRLWNKYMSNTYEQLSKLDNTIQDAGLYQGQVLVIEPQN 221 (231)
T ss_dssp EEEECTTCBHHHHHHHHHHHTTCCTTSCEEEEECSSSSSCEECCCTTSBTTTTTCCTTEEEEEEECC
T ss_pred EEEecccCcHHHHHHHHHHHhCCCCCCeEEEEEecCCCCHhhhcCCCCCHHHhCCCCCCEEEEEEec
Confidence 45668899999999999999999998 699998 22323333332 3333359999998863
No 131
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=28.21 E-value=70 Score=19.11 Aligned_cols=28 Identities=0% Similarity=-0.072 Sum_probs=21.6
Q ss_pred EEecCCCcHHHHHHHHHHhcCCCCCceEEEeCC
Q psy7980 24 VHIRKGQTLLEALSKAMKLRNLKPEMCTAYDSN 56 (93)
Q Consensus 24 V~vrpG~tlrdaL~Kalk~R~L~~~~C~Vy~~~ 56 (93)
.++ +|.|+.|.|. .-|+.++.++|...+
T Consensus 10 ~e~-~~~Tl~~LL~----~l~~~~~~vAV~vNg 37 (73)
T 2kl0_A 10 REV-QSASVAALMT----ELDCTGGHFAVALNY 37 (73)
T ss_dssp ECC-CCSBHHHHHH----HTTCCSSSCEEEESS
T ss_pred EEc-CCCcHHHHHH----HcCCCCCcEEEEECC
Confidence 345 8899988765 558899999998843
No 132
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=27.72 E-value=88 Score=17.78 Aligned_cols=46 Identities=20% Similarity=0.225 Sum_probs=29.8
Q ss_pred EEecCCCcHHHHHHHHHHhcCCCCCceEEEeCCCCc-ccccCCCCCCc-CCcee
Q psy7980 24 VHIRKGQTLLEALSKAMKLRNLKPEMCTAYDSNTGV-SLQWDTDSDHL-PTTEI 75 (93)
Q Consensus 24 V~vrpG~tlrdaL~Kalk~R~L~~~~C~Vy~~~~~~-~i~wdtD~~~L-~~eEl 75 (93)
.++..|.|+.|.|... ++.++.++|+..+.-- .-+|++ +.| +|.||
T Consensus 10 ~~~~~~~tv~~ll~~l----~~~~~~v~vavN~~~v~~~~~~~--~~L~~gD~v 57 (66)
T 1f0z_A 10 MQCAAGQTVHELLEQL----DQRQAGAALAINQQIVPREQWAQ--HIVQDGDQI 57 (66)
T ss_dssp ECCCTTCCHHHHHHHH----TCCCSSEEEEETTEEECHHHHTT--CCCCTTEEE
T ss_pred EEcCCCCcHHHHHHHc----CCCCCCEEEEECCEECCchhcCC--cCCCCCCEE
Confidence 4567899999988764 6788889998854322 234643 234 35555
No 133
>1f7l_A Holo-(acyl carrier protein) synthase; 9-strand pseudo beta barrel protein, COA complex protein, CO complex, transferase; HET: COA; 1.50A {Bacillus subtilis} SCOP: d.150.1.2 PDB: 1f7t_A 1f80_A*
Probab=27.59 E-value=56 Score=20.37 Aligned_cols=31 Identities=26% Similarity=0.193 Sum_probs=21.4
Q ss_pred CcHHHHHHHHHHh---cCCCCCceEEEeCCCCcc
Q psy7980 30 QTLLEALSKAMKL---RNLKPEMCTAYDSNTGVS 60 (93)
Q Consensus 30 ~tlrdaL~Kalk~---R~L~~~~C~Vy~~~~~~~ 60 (93)
-++++|+.||+-. .++.+..+.|......+|
T Consensus 54 waaKEA~~Kalg~g~~~~~~~~~i~i~~~~~G~P 87 (121)
T 1f7l_A 54 FAAKEAFSKAFGTGIGRQLSFQDIEIRKDQNGKP 87 (121)
T ss_dssp HHHHHHHHHHHTSCSBTTBCGGGCEEEECTTSCE
T ss_pred HHHHHHHHHHhCCCCCCCcceEEEEEEECCCCCc
Confidence 3678999999962 236678888887544333
No 134
>3gku_A Probable RNA-binding protein; APC21302, clostridium symbiosum ATCC 14 structural genomics, PSI-2, protein structure initiative; 2.95A {Clostridium symbiosum atcc 14940}
Probab=26.69 E-value=37 Score=25.06 Aligned_cols=27 Identities=22% Similarity=0.097 Sum_probs=24.2
Q ss_pred CCCcHHHHHHHHHHhcCCCCCceEEEe
Q psy7980 28 KGQTLLEALSKAMKLRNLKPEMCTAYD 54 (93)
Q Consensus 28 pG~tlrdaL~Kalk~R~L~~~~C~Vy~ 54 (93)
.|.|+-||+.+|++.-|++.+.-.+-.
T Consensus 10 ~gkTveeAi~~Al~~L~v~~d~l~~eV 36 (225)
T 3gku_A 10 TAKTVEEAVTKALIELQTTSDKLTYEI 36 (225)
T ss_dssp EESSHHHHHHHHHHHHTCCGGGEEEEE
T ss_pred EECCHHHHHHHHHHHhCCCHHHEEEEE
Confidence 599999999999999999999876655
No 135
>3pg6_A E3 ubiquitin-protein ligase DTX3L; DNA-damage, metal-binding, nucleus, phosphorylation, chromatin regulator, UBL conjugation pathway, zinc-finger; HET: CIT; 1.70A {Homo sapiens}
Probab=26.39 E-value=16 Score=26.19 Aligned_cols=43 Identities=21% Similarity=0.356 Sum_probs=30.6
Q ss_pred eEEEEcCCCCeeeEEecCCCcHHHHHHHHHHhcCCCCCceEEEe---CCCCcccccC
Q psy7980 11 LLRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKPEMCTAYD---SNTGVSLQWD 64 (93)
Q Consensus 11 ~irv~LPn~QrT~V~vrpG~tlrdaL~Kalk~R~L~~~~C~Vy~---~~~~~~i~wd 64 (93)
.=.+||||. ..|.-+-.-|.||.++|=+= .|=. .+....|.||
T Consensus 78 ~R~AYLPdn-------~eGr~VL~LL~~AF~~rLiF----TVG~S~TtG~~d~V~WN 123 (159)
T 3pg6_A 78 QRTAYLPDN-------KEGRKVLKLLYRAFDQKLIF----TVGYSRVLGVSDVITWN 123 (159)
T ss_dssp EEEEEEEES-------HHHHHHHHHHHHHHHTTCSE----EEEEETTTTEEEEEEEC
T ss_pred CeEEECCCC-------HHHHHHHHHHHHHHHcCCEE----EEeccccCCCCCEEEEC
Confidence 367999998 67999999999999887430 1111 2556777886
No 136
>1wxa_A Afadin, AF-6 protein; RAS-binding domain, ubiquitin-like fold, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.15.1.5
Probab=26.26 E-value=1.1e+02 Score=20.02 Aligned_cols=41 Identities=20% Similarity=0.135 Sum_probs=34.6
Q ss_pred ceEEEEc----CCCCeeeEEecCCCcHHHHHHHHHHhcCCCCCce
Q psy7980 10 ILLRAQL----PNQQRTSVHIRKGQTLLEALSKAMKLRNLKPEMC 50 (93)
Q Consensus 10 ~~irv~L----Pn~QrT~V~vrpG~tlrdaL~Kalk~R~L~~~~C 50 (93)
..++||= |+-...+|.|...-|..+.+..||++-||..+.+
T Consensus 10 g~lkIYg~~L~~~~~Yksvlvt~~tta~~vV~eaLekygL~~~~~ 54 (116)
T 1wxa_A 10 GTLRIYADSLKPNIPYKTILLSTTDTADFAVAESLEKYGLEKENP 54 (116)
T ss_dssp CEEEECCTTTCSSSCCEEEECCSSCCHHHHHHHHHHHHTCSSSCT
T ss_pred eEEEEeCCcccCCCceEEEEeCCCCCHHHHHHHHHHHhCCCCCCc
Confidence 3588873 7777889999999999999999999999976433
No 137
>2was_A 3-oxoacyl-[acyl-carrier-protein] synthase; COA, FAS, PPT, NAD, NADP, transferase, phosphoprotein, oxidoreductase, lipid synthesis; 1.90A {Saccharomyces cerevisiae} PDB: 2wat_A* 2was_B
Probab=25.92 E-value=40 Score=21.46 Aligned_cols=26 Identities=15% Similarity=0.055 Sum_probs=18.8
Q ss_pred cHHHHHHHHHHh----cCCCCCceEEEeCC
Q psy7980 31 TLLEALSKAMKL----RNLKPEMCTAYDSN 56 (93)
Q Consensus 31 tlrdaL~Kalk~----R~L~~~~C~Vy~~~ 56 (93)
++++|+.||+-. +++......|....
T Consensus 49 aaKEA~~KAlg~g~~~~~~~~~~iei~~~~ 78 (122)
T 2was_A 49 SAKEAVFKSLGVKSLGGGAALKDIEIVRVN 78 (122)
T ss_dssp HHHHHHHHHHCC-------CCTTEEEEEET
T ss_pred HHHHHHHHHhCCCccCCCCCCCEEEEEECC
Confidence 679999999975 35778888888753
No 138
>2wds_A Holo-[acyl-carrier-protein] synthase; phosphopantetheine ARM, fatty acid biosynthesis, lipid synthesis, transferase, polyketides; HET: COA; 1.35A {Streptomyces coelicolor} PDB: 2wdo_A* 2jca_A 2jbz_A* 2wdy_A*
Probab=25.86 E-value=54 Score=21.99 Aligned_cols=30 Identities=23% Similarity=0.153 Sum_probs=22.2
Q ss_pred cHHHHHHHHHHh-cCCCCCceEEEeCCCCcc
Q psy7980 31 TLLEALSKAMKL-RNLKPEMCTAYDSNTGVS 60 (93)
Q Consensus 31 tlrdaL~Kalk~-R~L~~~~C~Vy~~~~~~~ 60 (93)
+.++|+.|||-. .++...++.|.......|
T Consensus 74 AAKEAv~KAlG~G~~~~~~dieI~~~~~G~P 104 (143)
T 2wds_A 74 AAKEALAKALGAPAGLLWTDAEVWVEAGGRP 104 (143)
T ss_dssp HHHHHHHHHTTCCTTCCGGGEEEEECTTSCE
T ss_pred HHHHHHHHHhCCCCCCCceEEEEEeCCCCCc
Confidence 578999999975 566778888888644433
No 139
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=25.45 E-value=1.1e+02 Score=18.14 Aligned_cols=43 Identities=7% Similarity=0.145 Sum_probs=33.8
Q ss_pred eEEEEcCCCCeeeEEecCCCcHHHHHHHHHHhcCCCCC-ceEEEe
Q psy7980 11 LLRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKPE-MCTAYD 54 (93)
Q Consensus 11 ~irv~LPn~QrT~V~vrpG~tlrdaL~Kalk~R~L~~~-~C~Vy~ 54 (93)
.|.|-.+ ++...++|.+..|+.+-=.+.-+.-|+.++ +-.+|.
T Consensus 19 ~i~Vk~~-g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~ 62 (96)
T 1wx8_A 19 RVSVKTP-QDCHEFFLAENSNVRRFKKQISKYLHCNADRLVLIFT 62 (96)
T ss_dssp EEEEECS-SSEEEEEEETTCCHHHHHHHHHHHTCSCTTTBCCEET
T ss_pred EEEEEEC-CeEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEEC
Confidence 4555555 777889999999999988888888899888 555554
No 140
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=25.28 E-value=1.2e+02 Score=18.51 Aligned_cols=47 Identities=13% Similarity=0.070 Sum_probs=36.9
Q ss_pred CceEEEEcCCC----CeeeEEecCCCcHHHHHHHHHHhcCCCCC-ceEEEeC
Q psy7980 9 GILLRAQLPNQ----QRTSVHIRKGQTLLEALSKAMKLRNLKPE-MCTAYDS 55 (93)
Q Consensus 9 ~~~irv~LPn~----QrT~V~vrpG~tlrdaL~Kalk~R~L~~~-~C~Vy~~ 55 (93)
.+.|.|..+++ +...++|.+..|+.|--.+.-++-|+.++ +-.+|.+
T Consensus 7 ~m~I~Vk~~~~~~~~~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~g 58 (102)
T 1v5o_A 7 GMLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYME 58 (102)
T ss_dssp CEEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHHTCCCGGGBCEEETT
T ss_pred eEEEEEEECCCCcCceEEEEEcCCCCCHHHHHHHHHHHHCcChHHeEEEECC
Confidence 45677877765 46679999999999988888888999888 5555654
No 141
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=25.25 E-value=1.4e+02 Score=19.08 Aligned_cols=51 Identities=10% Similarity=-0.004 Sum_probs=37.5
Q ss_pred eeeEEecCCCcHHHHHHHHHHhcCCCCC-ceEEEeCCCCccc-ccCCCCCCcC
Q psy7980 21 RTSVHIRKGQTLLEALSKAMKLRNLKPE-MCTAYDSNTGVSL-QWDTDSDHLP 71 (93)
Q Consensus 21 rT~V~vrpG~tlrdaL~Kalk~R~L~~~-~C~Vy~~~~~~~i-~wdtD~~~L~ 71 (93)
...+.+.|..|+.+-=.|.-++-|++++ +-..|.+.....+ .++.|-..|+
T Consensus 19 ~~e~~v~~~~TV~~lK~ki~~~~Gip~~~qrL~~~g~~~~~~~~l~~D~~tL~ 71 (122)
T 1t0y_A 19 PMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLK 71 (122)
T ss_dssp CEEEEEETTSBHHHHHHHHHHHHCCCTTTEEEEEECSSSSEEEECCCCSSBTT
T ss_pred cEEEEeCCCCcHHHHHHHHHHHhCCCHHHeEEEEecCCCccccccCCCcCCHH
Confidence 5778999999999999999999999998 5555555333444 4455656664
No 142
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=25.16 E-value=1.4e+02 Score=19.03 Aligned_cols=45 Identities=18% Similarity=0.157 Sum_probs=36.8
Q ss_pred ceEEEEcCCC-CeeeEEecCCCcHHHHHHHHHHhcCCCCCceEEEe
Q psy7980 10 ILLRAQLPNQ-QRTSVHIRKGQTLLEALSKAMKLRNLKPEMCTAYD 54 (93)
Q Consensus 10 ~~irv~LPn~-QrT~V~vrpG~tlrdaL~Kalk~R~L~~~~C~Vy~ 54 (93)
..|+|--+++ +...+.+++...++--...-++++|+.++....+-
T Consensus 26 I~LkV~~~dg~~~v~fkIk~~t~l~kLm~aY~~~~g~~~~~vrF~F 71 (97)
T 2jxx_A 26 LQLRVQGKEKHQTLEVSLSRDSPLKTLMSHYEEAMGLSGRKLSFFF 71 (97)
T ss_dssp EEEEEEESSSSCEEEEEEETTSCHHHHHHHHHHHTTCSSSCCEEEE
T ss_pred EEEEEEcCCCCEEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEE
Confidence 3577777888 46789999999999999999999999998655554
No 143
>3ukw_C Bimax1 peptide; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding, protein transport-IN complex; HET: BTB; 2.10A {Mus musculus}
Probab=25.11 E-value=23 Score=18.50 Aligned_cols=14 Identities=29% Similarity=0.670 Sum_probs=10.5
Q ss_pred CCCCcccccCCCCC
Q psy7980 55 SNTGVSLQWDTDSD 68 (93)
Q Consensus 55 ~~~~~~i~wdtD~~ 68 (93)
.+.+.++.||.|-.
T Consensus 6 rprkrplewdedee 19 (28)
T 3ukw_C 6 RPRKRPLEWDEDEE 19 (28)
T ss_dssp -CCCCCCCCCGGGS
T ss_pred ccccCCcccccccC
Confidence 36778999998854
No 144
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=24.65 E-value=1.3e+02 Score=18.50 Aligned_cols=44 Identities=9% Similarity=0.215 Sum_probs=34.6
Q ss_pred ceEEEEcCCCCeeeEEecCCCcHHHHHHHHHHhcCCCCC-ceEEEe
Q psy7980 10 ILLRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKPE-MCTAYD 54 (93)
Q Consensus 10 ~~irv~LPn~QrT~V~vrpG~tlrdaL~Kalk~R~L~~~-~C~Vy~ 54 (93)
..|.|-.++++ ..++|.+..|+.+--.+.-+.-|++++ +-.+|.
T Consensus 23 m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~ 67 (100)
T 1yqb_A 23 IKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFA 67 (100)
T ss_dssp EEEEEECSSCE-EEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEET
T ss_pred EEEEEEcCCCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEEC
Confidence 35666667775 689999999999988888888999888 444554
No 145
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=24.51 E-value=1.2e+02 Score=17.98 Aligned_cols=46 Identities=13% Similarity=0.197 Sum_probs=37.1
Q ss_pred CceEEEEcCCCCeeeEEecCCCcHHHHHHHHHHhcCCCCCc-eEEEe
Q psy7980 9 GILLRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKPEM-CTAYD 54 (93)
Q Consensus 9 ~~~irv~LPn~QrT~V~vrpG~tlrdaL~Kalk~R~L~~~~-C~Vy~ 54 (93)
.+.|.|-..+++...++|.+-.|+.+--.+.-+.-|++++. -.+|.
T Consensus 9 ~~~i~v~~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~ 55 (88)
T 1sif_A 9 GLQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIFA 55 (88)
T ss_dssp -CEEEEEETTSCEEEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEET
T ss_pred ceEEEEEeCCCCEEEEEECCCChHHHHHHHHHHHHCcChhhEEEEEC
Confidence 34577778899999999999999999888888888998884 44554
No 146
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=24.29 E-value=1.9e+02 Score=20.37 Aligned_cols=47 Identities=9% Similarity=0.156 Sum_probs=39.5
Q ss_pred CceEEEEcCCCCeeeEEecCCCcHHHHHHHHHHhcCCCCC-ceEEEeC
Q psy7980 9 GILLRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKPE-MCTAYDS 55 (93)
Q Consensus 9 ~~~irv~LPn~QrT~V~vrpG~tlrdaL~Kalk~R~L~~~-~C~Vy~~ 55 (93)
++.|.|-..+++...++|.+..|+.+-=.+.-++-|++++ +-.+|.+
T Consensus 105 eMqI~VKtl~Gkt~~l~V~~s~TV~~LK~kI~~~~gIp~~~QrLi~~G 152 (189)
T 3q3f_A 105 GGQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAG 152 (189)
T ss_dssp CEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETT
T ss_pred ceeeeeecCCCCEEEEEeCCCCcHHHHHHHHHhccCCCHHHEEEEECC
Confidence 4567788889998999999999999999999999999888 5666654
No 147
>2la2_A Cecropin, papiliocin; antimicrobial peptide, cecropin-like peptide, AN inflammatory activity, antimicrobial protein; NMR {Papilio xuthus}
Probab=24.21 E-value=15 Score=20.68 Aligned_cols=13 Identities=23% Similarity=0.330 Sum_probs=10.6
Q ss_pred CCCcHHHHHHHHH
Q psy7980 28 KGQTLLEALSKAM 40 (93)
Q Consensus 28 pG~tlrdaL~Kal 40 (93)
-|+.+||++.||-
T Consensus 11 vGq~iRd~ii~Ag 23 (38)
T 2la2_A 11 VGRNVRDGIIKAG 23 (38)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhc
Confidence 4889999998863
No 148
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=24.04 E-value=1.5e+02 Score=19.00 Aligned_cols=43 Identities=5% Similarity=-0.124 Sum_probs=35.5
Q ss_pred eEEEEcCCCCeeeEEecCCCcHHHHHHHHHHhcCCCCCc-eEEE
Q psy7980 11 LLRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKPEM-CTAY 53 (93)
Q Consensus 11 ~irv~LPn~QrT~V~vrpG~tlrdaL~Kalk~R~L~~~~-C~Vy 53 (93)
.|-|=-+.|....|.|.|.-|+.+-=.++-.+-|++++. -..|
T Consensus 23 qI~Vk~~~Gkk~~v~v~p~DTI~~LK~~I~~k~Gip~~qQrLif 66 (93)
T 3plu_A 23 EVVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQK 66 (93)
T ss_dssp EEEEECTTSCEEEEEEETTSBHHHHHHHHHHHHTCCGGGEEEEE
T ss_pred EEEEECCCCCEEEEEECCcCHHHHHHHHHHHHhCCCHHHEEEEe
Confidence 455556789999999999999999888888899999984 5555
No 149
>1vlb_A Aldehyde oxidoreductase; iron-sulphur cluster; HET: PCD; 1.28A {Desulfovibrio gigas} SCOP: a.56.1.1 d.15.4.2 d.41.1.1 d.133.1.1 PDB: 1sij_A* 1zcs_A* 3fah_A* 3fc4_A* 3l4p_A*
Probab=23.57 E-value=99 Score=26.77 Aligned_cols=65 Identities=15% Similarity=0.172 Sum_probs=41.6
Q ss_pred EcCCCCeeeEEecCCCcHHHHHHHHHHhcCCC-------CCceEEEeCCCCcccccCCCCCCc-CCcee-EEEee
Q psy7980 15 QLPNQQRTSVHIRKGQTLLEALSKAMKLRNLK-------PEMCTAYDSNTGVSLQWDTDSDHL-PTTEI-RVEVM 80 (93)
Q Consensus 15 ~LPn~QrT~V~vrpG~tlrdaL~Kalk~R~L~-------~~~C~Vy~~~~~~~i~wdtD~~~L-~~eEl-~Ve~l 80 (93)
+.-|++...|++.|+++|-|.|...+..-|.. +-.|.|...+ +...+=-+-+..+ .|.|+ .||=|
T Consensus 6 ~~~ng~~~~~~~~~~~~ll~~Lr~~~~l~g~k~gC~~g~CGaCtv~vdg-~~~~sC~~~~~~~~~g~~i~Tiegl 79 (907)
T 1vlb_A 6 ITVNGIEQNLFVDAEALLSDVLRQQLGLTGVKVGCEQGQCGACSVILDG-KVVRACVTKMKRVADGAQITTIEGV 79 (907)
T ss_dssp EEETTEEEEEEECTTSBHHHHHHHTTCCTTSCCSSSSSSSCTTEEEETT-EEEEGGGCBGGGSCTTCEEECHHHH
T ss_pred EEECCEEEEEecCCCChHHHHHHHhcCCCeecCCCCCCCcCccEEEECC-eEeechHhHHHHHcCCCcEEEECCC
Confidence 34589888999999999999999876554442 3358888853 2222333334445 56554 34444
No 150
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=23.56 E-value=89 Score=23.34 Aligned_cols=43 Identities=7% Similarity=0.025 Sum_probs=33.0
Q ss_pred eEEEEcCCCCeeeEEecCCCcHHHHHHHHHHhcC----CCCCceEEEe
Q psy7980 11 LLRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRN----LKPEMCTAYD 54 (93)
Q Consensus 11 ~irv~LPn~QrT~V~vrpG~tlrdaL~Kalk~R~----L~~~~C~Vy~ 54 (93)
-++|+|| +.--+.++-|-+|+.||+-.+-++=+ -..++=+.|.
T Consensus 5 ~~~~~~~-~~~~~~~f~~~~~v~~~~~~i~e~~~~~~~~~~~~y~l~~ 51 (371)
T 3ivf_A 5 SLKISIG-NVVKTMQFEPSTMVYDACRMIRERIPEALAGPPNDFGLFL 51 (371)
T ss_dssp EEEEEET-TEEEEEEECTTCBHHHHHHHHHTTCGGGGSSCGGGEEEEE
T ss_pred EEEEEec-ceeEEEEECCCCCHHHHHHHHHHhcccccCCCHHHCeEec
Confidence 4899999 66778999999999999988755443 2455667776
No 151
>3hyk_A Holo-[acyl-carrier-protein] synthase; structural genomics, I diseases; HET: MSE A3P; 2.31A {Bacillus anthracis} SCOP: d.150.1.0
Probab=23.50 E-value=75 Score=20.48 Aligned_cols=30 Identities=20% Similarity=0.150 Sum_probs=22.2
Q ss_pred cHHHHHHHHHHh---cCCCCCceEEEeCCCCcc
Q psy7980 31 TLLEALSKAMKL---RNLKPEMCTAYDSNTGVS 60 (93)
Q Consensus 31 tlrdaL~Kalk~---R~L~~~~C~Vy~~~~~~~ 60 (93)
++++|+.|||-. .++......|.....++|
T Consensus 58 aaKEA~~KAlg~G~~~~~~~~dieI~~~~~G~P 90 (122)
T 3hyk_A 58 AAKEAYSKAVGTGIGKEVSFLDIEVRNDDRGKP 90 (122)
T ss_dssp HHHHHHHHHHTSCSSSSCCGGGCEEEECTTSCE
T ss_pred HHHHHHHHHhccCccCCcCceEEEEEECCCCCe
Confidence 679999999974 357788888888543333
No 152
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=23.45 E-value=1.2e+02 Score=17.60 Aligned_cols=46 Identities=7% Similarity=0.052 Sum_probs=30.3
Q ss_pred eeEEecCCCcHHHHHHHHHHhcCCCCCceEEEeCCCCcccccCCCCCCc-CCceeE
Q psy7980 22 TSVHIRKGQTLLEALSKAMKLRNLKPEMCTAYDSNTGVSLQWDTDSDHL-PTTEIR 76 (93)
Q Consensus 22 T~V~vrpG~tlrdaL~Kalk~R~L~~~~C~Vy~~~~~~~i~wdtD~~~L-~~eEl~ 76 (93)
..+++..|.|+.|-|... ++.++.++|...+. .+++|+ .| +|.+|.
T Consensus 16 ~~~~~~~~~tv~~Ll~~l----~~~~~~v~vavN~~--~v~~~~---~L~~gD~V~ 62 (70)
T 1ryj_A 16 KILESGAPRRIKDVLGEL----EIPIETVVVKKNGQ--IVIDEE---EIFDGDIIE 62 (70)
T ss_dssp EEEEESSCCBHHHHHHHT----TCCTTTEEEEETTE--ECCTTS---BCCTTCEEE
T ss_pred eeEECCCCCcHHHHHHHh----CCCCCCEEEEECCE--ECCCcc---cCCCCCEEE
Confidence 346778899999887743 67788888777432 345554 45 466654
No 153
>1dgj_A Aldehyde oxidoreductase; beta half-barrel, four-helix bundle, beta barrel; HET: MCN; 2.80A {Desulfovibrio desulfuricans} SCOP: a.56.1.1 d.15.4.2 d.41.1.1 d.133.1.1
Probab=22.69 E-value=97 Score=26.81 Aligned_cols=64 Identities=13% Similarity=0.200 Sum_probs=41.2
Q ss_pred cCCCCeeeEEecCCCcHHHHHHHHHHhcCC-------CCCceEEEeCCCCcccccCCCCCCc-CCceeE-EEee
Q psy7980 16 LPNQQRTSVHIRKGQTLLEALSKAMKLRNL-------KPEMCTAYDSNTGVSLQWDTDSDHL-PTTEIR-VEVM 80 (93)
Q Consensus 16 LPn~QrT~V~vrpG~tlrdaL~Kalk~R~L-------~~~~C~Vy~~~~~~~i~wdtD~~~L-~~eEl~-Ve~l 80 (93)
.-|++...|++.|+++|-|.|...+..-|. .+-.|.|...+ +...+=-+-+..+ .|.+|. ||=|
T Consensus 7 ~~ng~~~~~~~~~~~~ll~~Lr~~~~l~g~k~gC~~G~CGaCtv~vdg-~~v~sC~~~~~~~~~g~~i~TiEgl 79 (907)
T 1dgj_A 7 IVNGMARRLLVSPNDLLVDVLRSQLQLTSVKVGCGKGQCGACTVILDG-KVVRACIIKMSRVAENASVTTLEGI 79 (907)
T ss_dssp EETTBCCEEEECTTCBHHHHHHHTTCCTTSCCSSSSSSSCTTEEEETT-EEEEGGGCBGGGSCTTCEEECGGGT
T ss_pred EECCEEEEEecCCCCcHHHHHHHhcCCCccCCCCCCCCcCceEEEECC-eEeehhHhHHHHHcCCCcEEEECCC
Confidence 348888889999999999999987655444 33458888853 2222333334445 566553 4444
No 154
>3h88_A Holo-[acyl-carrier-protein] synthase; alpha-beta structure, structural genomics of infectious diseases, cytoplasm, fatty acid biosynthesis; HET: COA; 1.85A {Vibrio cholerae} PDB: 3ota_A* 3qmn_A*
Probab=22.69 E-value=70 Score=20.89 Aligned_cols=30 Identities=23% Similarity=0.140 Sum_probs=22.3
Q ss_pred cHHHHHHHHHHh---cCCCCCceEEEeCCCCcc
Q psy7980 31 TLLEALSKAMKL---RNLKPEMCTAYDSNTGVS 60 (93)
Q Consensus 31 tlrdaL~Kalk~---R~L~~~~C~Vy~~~~~~~ 60 (93)
+.++|+.||+-. .++......|.....+.|
T Consensus 57 aaKEA~~KAlg~g~~~~~~~~dieI~~~~~G~P 89 (129)
T 3h88_A 57 AAKEAASKALGTGIAQGVTFHDFTISHDKLGKP 89 (129)
T ss_dssp HHHHHHHHHTTSCSCTTCCGGGEEEEECTTSCE
T ss_pred HHHHHHHHHhccCccCCccceEEEEEECCCCCE
Confidence 689999999985 456778888888543333
No 155
>3ghd_A A cystathionine beta-synthase domain protein FUSE ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus}
Probab=22.42 E-value=87 Score=18.01 Aligned_cols=29 Identities=3% Similarity=0.072 Sum_probs=20.1
Q ss_pred eEEecCCCcHHHHHHHHHHhcCCCCCceEEEe
Q psy7980 23 SVHIRKGQTLLEALSKAMKLRNLKPEMCTAYD 54 (93)
Q Consensus 23 ~V~vrpG~tlrdaL~Kalk~R~L~~~~C~Vy~ 54 (93)
.|-+.|..|++||+. .|..+++. ...|-.
T Consensus 2 ~vtv~p~~tv~ea~~-~M~~~~i~--~~~V~d 30 (70)
T 3ghd_A 2 AIVVQPKDTVDRVAK-ILSRNKAG--SAVVME 30 (70)
T ss_dssp EEEECTTCBHHHHHH-HHHHTTCS--EEEEEE
T ss_pred CEEECCCCcHHHHHH-HHHHcCCC--EEEEEE
Confidence 477899999999975 56666653 344443
No 156
>3f09_A Holo-[acyl-carrier-protein] synthase; structural genomics, I deseases, fatty acid biosynthesis, lipid synthesis; 1.82A {Staphylococcus aureus subsp} PDB: 4dxe_A
Probab=22.38 E-value=48 Score=22.29 Aligned_cols=31 Identities=23% Similarity=0.270 Sum_probs=20.0
Q ss_pred CcHHHHHHHHHHh---cCCCCCceEEEeCCCCcc
Q psy7980 30 QTLLEALSKAMKL---RNLKPEMCTAYDSNTGVS 60 (93)
Q Consensus 30 ~tlrdaL~Kalk~---R~L~~~~C~Vy~~~~~~~ 60 (93)
-++++|+.|||-. +++......|......+|
T Consensus 79 wAaKEA~~KAlG~G~~~~~~~~dIeI~~d~~GkP 112 (143)
T 3f09_A 79 FATKEAFSKALGTGLGKHVAFNDIDCYNDELGKP 112 (143)
T ss_dssp HHHHHHHHHHHC------CCGGGCCEEEC--CCE
T ss_pred HHHHHHHHHHhccCcccCcCcceEEEEECCCCCe
Confidence 3689999999964 357788888887543333
No 157
>1owf_B IHF-beta, integration HOST factor beta-subunit; protein-DNA recognition, indirect readout, DNA bending, minor groove; 1.95A {Escherichia coli} SCOP: a.55.1.1 PDB: 1ouz_B 2ht0_B 1ihf_B 1owg_B
Probab=22.16 E-value=55 Score=20.05 Aligned_cols=18 Identities=17% Similarity=0.329 Sum_probs=15.8
Q ss_pred CeeeEEecCCCcHHHHHH
Q psy7980 20 QRTSVHIRKGQTLLEALS 37 (93)
Q Consensus 20 QrT~V~vrpG~tlrdaL~ 37 (93)
-+.+|.++||..|++++.
T Consensus 74 a~~~v~Fkp~k~lk~~v~ 91 (94)
T 1owf_B 74 GKYVPHFKPGKELRDRAN 91 (94)
T ss_dssp CEEEEEEEECHHHHHHHC
T ss_pred CcCcEEEEECHHHHHHHh
Confidence 468999999999999875
No 158
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=22.05 E-value=1.1e+02 Score=16.94 Aligned_cols=43 Identities=14% Similarity=0.076 Sum_probs=33.4
Q ss_pred EEEEcCCCCeeeEEecCCCcHHHHHHHHHHhcCCCCCceEEEeC
Q psy7980 12 LRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKPEMCTAYDS 55 (93)
Q Consensus 12 irv~LPn~QrT~V~vrpG~tlrdaL~Kalk~R~L~~~~C~Vy~~ 55 (93)
|.|-- +++...+++.+..|+.+--.+.-+.-|++++.-..+..
T Consensus 7 i~vk~-~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~ 49 (77)
T 2bwf_A 7 IHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYS 49 (77)
T ss_dssp EEEEE-TTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEET
T ss_pred EEEEE-CCEEEEEEECCCCcHHHHHHHHHHHhCCCHHHEEEEEC
Confidence 44544 77788899999999999888888888998885554443
No 159
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=21.74 E-value=1.9e+02 Score=19.52 Aligned_cols=44 Identities=9% Similarity=0.167 Sum_probs=36.4
Q ss_pred EEEEcCCCCeeeEEecCCCcHHHHHHHHHHhcCCCCC-ceEEEeC
Q psy7980 12 LRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKPE-MCTAYDS 55 (93)
Q Consensus 12 irv~LPn~QrT~V~vrpG~tlrdaL~Kalk~R~L~~~-~C~Vy~~ 55 (93)
|.|-.++|+...+.|.+..|+.+-=.+.-++-|++++ +-.+|.+
T Consensus 3 I~Vk~~~Gk~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~G 47 (169)
T 3l0w_B 3 IFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAG 47 (169)
T ss_dssp EEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCTTTEEEEETT
T ss_pred EEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCHHHEEEEECC
Confidence 5666788888889999999999999999999999888 5555543
No 160
>3rhi_A DNA-binding protein HU; structural genomics, center for structural genom infectious diseases, csgid; 2.48A {Bacillus anthracis} SCOP: a.55.1.1 PDB: 1hue_A 1huu_A
Probab=21.70 E-value=38 Score=20.91 Aligned_cols=17 Identities=24% Similarity=0.337 Sum_probs=15.3
Q ss_pred CeeeEEecCCCcHHHHH
Q psy7980 20 QRTSVHIRKGQTLLEAL 36 (93)
Q Consensus 20 QrT~V~vrpG~tlrdaL 36 (93)
-+.+|.++||..|+|++
T Consensus 76 a~~~v~Fkp~k~Lk~~v 92 (93)
T 3rhi_A 76 ASKVPAFKAGKELKEAV 92 (93)
T ss_dssp CEEEEEEEECHHHHHHH
T ss_pred CcccEEEEECHHHHHhh
Confidence 48899999999999986
No 161
>2fp7_A Serine protease subunit NS2B; flavivirus, NS3 protease, NS2B cofactor; HET: OAR; 1.68A {West nile virus} PDB: 3e90_A*
Probab=21.18 E-value=42 Score=19.82 Aligned_cols=18 Identities=28% Similarity=0.785 Sum_probs=12.9
Q ss_pred cccCCCCCCcCCceeEEEe
Q psy7980 61 LQWDTDSDHLPTTEIRVEV 79 (93)
Q Consensus 61 i~wdtD~~~L~~eEl~Ve~ 79 (93)
|.|+.|+ ...|...++++
T Consensus 17 v~W~~eA-e~sG~s~rldV 34 (54)
T 2fp7_A 17 ITWESDA-EITGSSERVDV 34 (54)
T ss_dssp CCCCTTC-EECCCCCEEEE
T ss_pred cccCcch-hhcCCcceEEE
Confidence 8999999 66676665443
No 162
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=21.12 E-value=1.6e+02 Score=18.23 Aligned_cols=65 Identities=14% Similarity=0.142 Sum_probs=45.2
Q ss_pred EEEEcCCCCeeeEEecCCCcHHHHHHHHHHhcCCCCC-ceEEEeCCCCcccccCCCCCCc---CCceeEEEe
Q psy7980 12 LRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKPE-MCTAYDSNTGVSLQWDTDSDHL---PTTEIRVEV 79 (93)
Q Consensus 12 irv~LPn~QrT~V~vrpG~tlrdaL~Kalk~R~L~~~-~C~Vy~~~~~~~i~wdtD~~~L---~~eEl~Ve~ 79 (93)
|.|-..+|+...+.|.+..|+.+-=.+.-++-|+.++ +-.+|.+ +.+.-+..++.+ .|..|.+-+
T Consensus 4 I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~G---k~L~D~~tL~~~~i~~g~~i~lv~ 72 (106)
T 3m62_B 4 LTFKNFKKEKVPLDLEPSNTILETKTKLAQSISCEESQIKLIYSG---KVLQDSKTVSECGLKDGDQVVFMV 72 (106)
T ss_dssp EEEECTTCCEEEECCCTTSBHHHHHHHHHHTTTSCGGGCEEEETT---EECCTTSBTTTTTCCTTCEEEEEC
T ss_pred EEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECC---EECCCcCCHHHcCCCCCCEEEEEE
Confidence 5566678888899999999999998888889999887 5666654 233333333333 355665544
No 163
>2uwq_A Apoptosis-stimulating of P53 protein 2; ASPP2, ubiquitin-like, SH3-domain, cell cycle, ANK repeat, SH3-binding; NMR {Homo sapiens}
Probab=21.01 E-value=1.4e+02 Score=19.06 Aligned_cols=44 Identities=11% Similarity=0.053 Sum_probs=34.3
Q ss_pred CceEEEEcCCCCeeeE--EecCCCcHHHHHHHHHHhcCCCCCceEEEe
Q psy7980 9 GILLRAQLPNQQRTSV--HIRKGQTLLEALSKAMKLRNLKPEMCTAYD 54 (93)
Q Consensus 9 ~~~irv~LPn~QrT~V--~vrpG~tlrdaL~Kalk~R~L~~~~C~Vy~ 54 (93)
.+.|+|++=|.||.+- .+-+..|-+|.+ ..++.-|- -.+|.+=+
T Consensus 6 ~mel~Vwv~g~er~v~~vgvT~~TTC~DVV-aL~~~~G~-~~~~LvE~ 51 (86)
T 2uwq_A 6 PMFLTVYLSNNEQHFTEVPVTPETICRDVV-DLCKEPGE-SDCHLAEV 51 (86)
T ss_dssp SEEEEEECSSCSSCEEEEEECTTCBSHHHH-HHSCSSCS-SSCEEEEE
T ss_pred ceEEEEEecCCccEEEccCCCCCCcHHHHH-HHHHccCC-CcEEEEee
Confidence 4579999999999988 999999999999 66665554 44554443
No 164
>3fio_A A cystathionine beta-synthase domain protein fused to A Zn-ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus} PDB: 3ghd_A
Probab=20.98 E-value=1e+02 Score=16.38 Aligned_cols=30 Identities=3% Similarity=0.063 Sum_probs=20.0
Q ss_pred eEEecCCCcHHHHHHHHHHhcCCCCCceEEEeC
Q psy7980 23 SVHIRKGQTLLEALSKAMKLRNLKPEMCTAYDS 55 (93)
Q Consensus 23 ~V~vrpG~tlrdaL~Kalk~R~L~~~~C~Vy~~ 55 (93)
.+.+.++.++.+|+.+ |...++ ....|...
T Consensus 2 ~~~v~~~~~~~~a~~~-m~~~~~--~~~pV~d~ 31 (70)
T 3fio_A 2 AIVVQPKDTVDRVAKI-LSRNKA--GSAVVMEG 31 (70)
T ss_dssp EEEECTTCBHHHHHHH-HHHTTC--SEEEEEET
T ss_pred CeEECCCCcHHHHHHH-HHHcCC--CEEEEEEC
Confidence 3568899999999966 444443 44555543
No 165
>2ijo_A Polyprotein; WEST NIle virus, protease, aprotinin, BPTI, NS2B, NS3, flavivirus, serine protease; 2.30A {West nile virus}
Probab=20.89 E-value=43 Score=20.10 Aligned_cols=18 Identities=28% Similarity=0.789 Sum_probs=12.9
Q ss_pred cccCCCCCCcCCceeEEEe
Q psy7980 61 LQWDTDSDHLPTTEIRVEV 79 (93)
Q Consensus 61 i~wdtD~~~L~~eEl~Ve~ 79 (93)
|.|+.|+ ...|...++++
T Consensus 13 v~W~~eA-e~sG~s~rldV 30 (58)
T 2ijo_A 13 ISWESDA-EITGSSERVDV 30 (58)
T ss_dssp CCCCTTC-EECCCCCEEEE
T ss_pred CccCcch-hhcCCcceEEE
Confidence 8999999 66666665443
No 166
>1tke_A Threonyl-tRNA synthetase; ligase; 1.46A {Escherichia coli} SCOP: d.15.10.1 d.67.1.1 PDB: 1tje_A 1tkg_A* 1tky_A*
Probab=20.70 E-value=97 Score=21.65 Aligned_cols=26 Identities=12% Similarity=0.155 Sum_probs=20.3
Q ss_pred EEEEcCCCCeeeEEecCCCcHHHHHHHH
Q psy7980 12 LRAQLPNQQRTSVHIRKGQTLLEALSKA 39 (93)
Q Consensus 12 irv~LPn~QrT~V~vrpG~tlrdaL~Ka 39 (93)
+.|.+|||+ ..++..|.|+.|.+...
T Consensus 2 i~I~~p~G~--~~~~~~g~T~~dia~~i 27 (224)
T 1tke_A 2 PVITLPDGS--QRHYDHAVSPMDVALDI 27 (224)
T ss_dssp CEEECTTSC--EEECSSCBCHHHHHHHH
T ss_pred eEEEeCCCC--EEEecCCCCHHHHHHHH
Confidence 578999985 47788899999976543
No 167
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=20.50 E-value=1.6e+02 Score=18.17 Aligned_cols=55 Identities=15% Similarity=0.052 Sum_probs=38.4
Q ss_pred CCCC--eeeEEecCCCcHHHHHHHHHHhcCCCCC-ceEEEeCCCCcccccCCCCCCcC
Q psy7980 17 PNQQ--RTSVHIRKGQTLLEALSKAMKLRNLKPE-MCTAYDSNTGVSLQWDTDSDHLP 71 (93)
Q Consensus 17 Pn~Q--rT~V~vrpG~tlrdaL~Kalk~R~L~~~-~C~Vy~~~~~~~i~wdtD~~~L~ 71 (93)
++.+ ...+.+.|..|+.+-=.|.-.+=|++|+ +-..|.++.+....++.|-..|+
T Consensus 23 s~~~~~~~~~~v~~~~TV~~LK~kI~~~~GiP~~~QrL~~~~~g~~~~~L~~D~~tL~ 80 (95)
T 2kjr_A 23 SHNDAVAFEVKLAKDLTVAQLKTKLEILTGGCAGTMKVQVFKGDTCVSTMDNNDAQLG 80 (95)
T ss_dssp SSCSCEEEEEEEETTCBHHHHHHHHHHHHCSCTTTEEEEEEETTEEEEECCCTTSBHH
T ss_pred CCCCceEEEEEeCccCHHHHHHHHHHHHHCcCHHHeEEEEecCCcccceeCCCCCCHh
Confidence 4543 6789999999999988888899999998 55555542222224556666664
No 168
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=20.46 E-value=1.6e+02 Score=18.08 Aligned_cols=46 Identities=13% Similarity=0.202 Sum_probs=37.4
Q ss_pred ceEEEEcCCCCeeeEEecCCCcHHHHHHHHHHhcCCCCC-ceEEEeC
Q psy7980 10 ILLRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKPE-MCTAYDS 55 (93)
Q Consensus 10 ~~irv~LPn~QrT~V~vrpG~tlrdaL~Kalk~R~L~~~-~C~Vy~~ 55 (93)
..|.|-..+++...+.|.+..|+.+--.+.-++-|+.++ +-.+|.+
T Consensus 24 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~G 70 (106)
T 1ttn_A 24 CQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSG 70 (106)
T ss_dssp EEEEEEETTTEEEEEEECTTSHHHHHHHHHHHTTCCCSTTCEEEETT
T ss_pred EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHHCcCcccEEEEECC
Confidence 457777788888889999999999999998999999888 5555543
No 169
>1mul_A NS2, HU-2, DNA binding protein HU-alpha; histone-like; HET: DNA; 2.30A {Escherichia coli} SCOP: a.55.1.1 PDB: 2o97_A
Probab=20.27 E-value=43 Score=20.38 Aligned_cols=21 Identities=14% Similarity=0.264 Sum_probs=15.4
Q ss_pred EEcCCCCeeeEEecCCCcHHHHH
Q psy7980 14 AQLPNQQRTSVHIRKGQTLLEAL 36 (93)
Q Consensus 14 v~LPn~QrT~V~vrpG~tlrdaL 36 (93)
+..| -+.+|.++||..|++++
T Consensus 69 i~i~--a~~~v~Fkp~k~lk~~v 89 (90)
T 1mul_A 69 IKIA--AANVPAFVSGKALKDAV 89 (90)
T ss_dssp ---C--CEEEEEEEECHHHHHHH
T ss_pred EEec--CCccEEEEECHHHHHhh
Confidence 3445 36899999999999986
No 170
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=20.06 E-value=1.2e+02 Score=18.22 Aligned_cols=32 Identities=19% Similarity=0.146 Sum_probs=22.9
Q ss_pred CCCeeeEEec--CCCcHHHHHHHHHHhcCCC-CCceEEEeC
Q psy7980 18 NQQRTSVHIR--KGQTLLEALSKAMKLRNLK-PEMCTAYDS 55 (93)
Q Consensus 18 n~QrT~V~vr--pG~tlrdaL~Kalk~R~L~-~~~C~Vy~~ 55 (93)
|++. .++. .|.||.|.|. .-|+. ++.++|-..
T Consensus 6 NGe~--~e~~~~~~~Tl~~LL~----~l~~~~~~~vAVavN 40 (78)
T 2k5p_A 6 NGKP--STVDGAESLNVTELLS----ALKVAQAEYVTVELN 40 (78)
T ss_dssp TTEE--EECSSCSCEEHHHHHH----HHTCSCTTTCCEEET
T ss_pred CCEE--EEcCCCCCCcHHHHHH----HcCCCCCCcEEEEEC
Confidence 5543 3455 7899998876 34788 888998884
Done!