RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy7980
(93 letters)
>gnl|CDD|176411 cd01816, Raf_RBD, Ubiquitin domain of Raf serine/threonine
kinases. The Raf serine/threonine kinases are composed
of three conserved regions, CR1, CR2 and CR3. CR1 has
two Ras binding domains (RBD and CRD), CR2 is a
serine/threonine rich domain and CR3 is the catalytic
kinase domain. The RBD of Raf is structurally similar
to ubiquitin with little of no sequence similarity.The
Raf signalling pathway plays an important role in the
proliferation and survival of tumor cells.
Length = 74
Score = 73.2 bits (180), Expect = 6e-19
Identities = 33/74 (44%), Positives = 49/74 (66%), Gaps = 4/74 (5%)
Query: 11 LLRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKPEMCTAY----DSNTGVSLQWDTD 66
L+R LPN+QRT V++R G TL +AL+KA+K+R L+PE C + S+ + + WDTD
Sbjct: 1 LIRVFLPNKQRTVVNVRPGMTLRDALAKALKVRGLQPECCAVFRLGDGSSKKLRIDWDTD 60
Query: 67 SDHLPTTEIRVEVM 80
L E++VEV+
Sbjct: 61 ISSLIGEELQVEVL 74
>gnl|CDD|202147 pfam02196, RBD, Raf-like Ras-binding domain.
Length = 71
Score = 58.5 bits (142), Expect = 3e-13
Identities = 30/70 (42%), Positives = 37/70 (52%)
Query: 10 ILLRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKPEMCTAYDSNTGVSLQWDTDSDH 69
R LPN QR+ V +R G T+ +AL+KA K R L P C S L DTD
Sbjct: 1 KTCRVHLPNNQRSVVEVRPGMTVRDALAKACKRRGLNPSACAVRLSGEKKPLDLDTDISS 60
Query: 70 LPTTEIRVEV 79
LP E+RVE+
Sbjct: 61 LPGEELRVEL 70
>gnl|CDD|128731 smart00455, RBD, Raf-like Ras-binding domain.
Length = 70
Score = 58.1 bits (141), Expect = 5e-13
Identities = 24/69 (34%), Positives = 34/69 (49%)
Query: 11 LLRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKPEMCTAYDSNTGVSLQWDTDSDHL 70
+ LP+ QRT V +R G+T+ +AL+KA+K R L PE C L + L
Sbjct: 1 TCKVHLPDNQRTVVKVRPGKTVRDALAKALKKRGLNPECCVVRLRGEKKPLDLNQPISSL 60
Query: 71 PTTEIRVEV 79
E+ VE
Sbjct: 61 DGQELVVEE 69
>gnl|CDD|176358 cd01760, RBD, Ubiquitin-like domain of RBD-like S/T kinases. The
ras-binding domain (RBD) of the serine/threonine kinase
raf is structurally quite similar to the beta-grasp
fold of ubiquitin. A raf-like RBD is also present in
RGS12 and other members of a family of GTPase
activating proteins and TIAM1, a guanine nucleotide
exchange protein.
Length = 72
Score = 57.6 bits (140), Expect = 7e-13
Identities = 29/71 (40%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Query: 11 LLRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKPEMCTAY--DSNTGVSLQWDTDSD 68
L R LPN QRT V +R G ++ + L+KA K R L PE C + + L DTDS
Sbjct: 1 LCRVYLPNGQRTVVPVRPGMSVRDVLAKACKKRGLNPECCDVFLLGLDEKKPLDLDTDSS 60
Query: 69 HLPTTEIRVEV 79
L E+ VE
Sbjct: 61 SLAGEELEVEP 71
>gnl|CDD|176413 cd01818, TIAM1_RBD, Ubiquitin domain of Tiam1 guanine nucleotide
exchange factor. Tiam1 (T lymphoma invasion and
metastasis 1) a guanine nucleotide exchange factor that
activates Rac, is an important regulator of Rho GTPase
functions in tumor cells including regulation of cell
shape and invasiveness in epithelial cells and
fibroblasts. TIAM1 has an RBD (Ras-binding domain)
similar to that of Raf kinase as well as PH (pleckstrin
homology), PDZ, and RhoGEF domains.
Length = 77
Score = 29.4 bits (66), Expect = 0.091
Identities = 12/54 (22%), Positives = 23/54 (42%), Gaps = 7/54 (12%)
Query: 16 LPNQQRTSVHIRKGQTLLEALSKAMKLRNLKPEMCTAYDSNTGVSLQWDTDSDH 69
LP+ Q ++R G ++ + L A K + L P + L++ +H
Sbjct: 6 LPDNQPVLTYLRPGMSVEDFLESACKRKQLDP-------MEHYLRLKFLRMENH 52
>gnl|CDD|185698 cd09021, Aldose_epim_Ec_YphB, aldose 1-epimerase, similar to
Escherichia coli YphB. Proteins similar to Escherichia
coli YphB are uncharacterized members of the
aldose-1-epimerase superfamily. Aldose 1-epimerases or
mutarotases are key enzymes of carbohydrate metabolism,
catalyzing the interconversion of the alpha- and
beta-anomers of hexose sugars such as glucose and
galactose. This interconversion is an important step
that allows anomer specific metabolic conversion of
sugars. Studies of the catalytic mechanism of the best
known member of the family, galactose mutarotase, have
shown a glutamate and a histidine residue to be critical
for catalysis; the glutamate serves as the active site
base to initiate the reaction by removing the proton
from the C-1 hydroxyl group of the sugar substrate, and
the histidine as the active site acid to protonate the
C-5 ring oxygen.
Length = 273
Score = 26.5 bits (59), Expect = 2.2
Identities = 7/16 (43%), Positives = 7/16 (43%)
Query: 57 TGVSLQWDTDSDHLPT 72
W D DHLPT
Sbjct: 156 ADADGVWLEDEDHLPT 171
>gnl|CDD|151909 pfam11470, TUG, GLUT4 regulating protein TUG. TUG is a GLUT4
regulating protein and functions to retain membrane
vesicles containing GLUT4 intracellularly. TUG releases
the GLUT4 containing vesicles to the cellular exocytic
machinery in response to insulin stimulation which
allows translocation to the plasma membrane. TUG has an
N-terminal ubiquitin-like domain (UBL1) which in
similar proteins appears to participate in
protein-protein interactions. The region does have a
area of negative electrostatic potential and increased
backbone motility which leads to suggestions of a
potential protein-protein interaction site.
Length = 65
Score = 24.9 bits (55), Expect = 3.5
Identities = 13/49 (26%), Positives = 21/49 (42%), Gaps = 2/49 (4%)
Query: 17 PNQQRTSVHIRKGQTLLEALSKAMKLRNLKPEMCTAYDSNTGV--SLQW 63
N +R +V + TL + L +A K L P T + + SL +
Sbjct: 4 YNFRRVTVKVTPSTTLNQVLEEACKKFGLDPSEYTLKHNRKPLDLSLPF 52
>gnl|CDD|226414 COG3898, COG3898, Uncharacterized membrane-bound protein [Function
unknown].
Length = 531
Score = 26.0 bits (57), Expect = 3.9
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 17 PNQQRTSVHIRKGQTLLEALSKAMKLRNLKPE 48
P+ V R G T L+ L +A KL +LKP
Sbjct: 296 PDIALLYVRARSGDTALDRLKRAKKLESLKPN 327
>gnl|CDD|132487 TIGR03446, mycothiol_Mca, mycothiol conjugate amidase Mca.
Mycobacterium tuberculosis, Corynebacterium glutamicum,
and related species use the thiol mycothiol in place of
glutathione. This enzyme, homologous to the
(dispensible) MshB enzyme of mycothiol biosynthesis, is
described as an amidase that acts on conjugates to
mycothiol. It is a detoxification enzyme [Cellular
processes, Detoxification].
Length = 283
Score = 25.5 bits (56), Expect = 4.7
Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 10/55 (18%)
Query: 33 LEALSKAMK-----LRNLKPEMCTAYDSNTGVSLQWDTDSDHLPTTEIRVEVMEG 82
LE L +A + +R +P + T YD N G DH+ E+ VE E
Sbjct: 103 LEPLEEAAEPLVRVIREFRPHVITTYDENGGYP-----HPDHIMCHEVSVEAFEA 152
>gnl|CDD|235855 PRK06707, PRK06707, amidase; Provisional.
Length = 536
Score = 25.3 bits (55), Expect = 6.2
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 18 NQQRTSVHIRKGQTLLEALSKAMKLR 43
N++ + I+ GQTL+EA K+ +
Sbjct: 416 NKKDSKRRIKYGQTLIEASEKSAITK 441
>gnl|CDD|233262 TIGR01078, arcA, arginine deiminase. Arginine deiminase is the
first enzyme of the arginine deiminase pathway of
arginine degradation [Energy metabolism, Amino acids and
amines].
Length = 405
Score = 25.0 bits (55), Expect = 6.5
Identities = 12/55 (21%), Positives = 23/55 (41%)
Query: 16 LPNQQRTSVHIRKGQTLLEALSKAMKLRNLKPEMCTAYDSNTGVSLQWDTDSDHL 70
LP + + + L E L+ A+ ++ L+ DS QW+ ++ L
Sbjct: 297 LPYGNNEPIIVEEKAPLEEVLASALGVKKLRLIPTGGGDSVEAEREQWNDGNNVL 351
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.132 0.381
Gapped
Lambda K H
0.267 0.0743 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 4,414,288
Number of extensions: 332200
Number of successful extensions: 286
Number of sequences better than 10.0: 1
Number of HSP's gapped: 284
Number of HSP's successfully gapped: 16
Length of query: 93
Length of database: 10,937,602
Length adjustment: 60
Effective length of query: 33
Effective length of database: 8,276,362
Effective search space: 273119946
Effective search space used: 273119946
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.2 bits)