RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy7980
         (93 letters)



>d1wxma1 d.15.1.5 (A:8-80) A-Raf proto-oncogene
          serine/threonine-protein kinase {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 73

 Score = 66.3 bits (162), Expect = 7e-17
 Identities = 25/72 (34%), Positives = 38/72 (52%), Gaps = 2/72 (2%)

Query: 11 LLRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKPEMCTAY--DSNTGVSLQWDTDSD 68
           ++  LPN+QRT V +R G ++ ++L KA+K+R L  + C  Y           WDT   
Sbjct: 2  TVKVYLPNKQRTVVTVRDGMSVYDSLDKALKVRGLNQDCCVVYRLIKGRKTVTAWDTAIA 61

Query: 69 HLPTTEIRVEVM 80
           L   E+ VEV+
Sbjct: 62 PLDGEELIVEVL 73


>d1c1yb_ d.15.1.5 (B:) c-Raf1 RBD {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 77

 Score = 65.6 bits (160), Expect = 2e-16
 Identities = 27/75 (36%), Positives = 43/75 (57%), Gaps = 5/75 (6%)

Query: 11 LLRAQLPNQQRTSVHIRKGQTLLEALSKAMKLRNLKPEMCTAY-----DSNTGVSLQWDT 65
           +R  LPN+QRT V++R G +L + L KA+K+R L+PE C  +            L W+T
Sbjct: 3  TIRVFLPNKQRTVVNVRNGMSLHDCLMKALKVRGLQPECCAVFRLLHEHKGKKARLDWNT 62

Query: 66 DSDHLPTTEIRVEVM 80
          D+  L   E++V+ +
Sbjct: 63 DAASLIGEELQVDFL 77


>d1doia_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Archaeon Haloarcula
          marismortui [TaxId: 2238]}
          Length = 128

 Score = 25.6 bits (56), Expect = 0.71
 Identities = 6/26 (23%), Positives = 13/26 (50%)

Query: 14 AQLPNQQRTSVHIRKGQTLLEALSKA 39
            L ++   S+ + +G+ +LEA    
Sbjct: 30 MDLDDEDYGSLEVNEGEYILEAAEAQ 55


>d1krha3 d.15.4.2 (A:2-105) Benzoate dioxygenase reductase,
          N-terminal domain {Acinetobacter sp. [TaxId: 472]}
          Length = 104

 Score = 23.0 bits (49), Expect = 5.7
 Identities = 6/25 (24%), Positives = 12/25 (48%)

Query: 15 QLPNQQRTSVHIRKGQTLLEALSKA 39
          Q  +     + I +G+TL +A  + 
Sbjct: 8  QFEDGVTRFICIAQGETLSDAAYRQ 32


>d1m3ua_ c.1.12.8 (A:) Ketopantoate hydroxymethyltransferase PanB
          {Escherichia coli [TaxId: 562]}
          Length = 262

 Score = 23.2 bits (49), Expect = 6.6
 Identities = 5/20 (25%), Positives = 8/20 (40%)

Query: 38 KAMKLRNLKPEMCTAYDSNT 57
          +  K    +    TAYD + 
Sbjct: 8  QKYKQEKKRFATITAYDYSF 27


>d1oy0a_ c.1.12.8 (A:) Ketopantoate hydroxymethyltransferase PanB
          {Mycobacterium tuberculosis [TaxId: 1773]}
          Length = 262

 Score = 23.2 bits (49), Expect = 7.6
 Identities = 8/20 (40%), Positives = 10/20 (50%)

Query: 38 KAMKLRNLKPEMCTAYDSNT 57
          +  K    K  M TAYD +T
Sbjct: 10 QRWKADGHKWAMLTAYDYST 29


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.132    0.381 

Gapped
Lambda     K      H
   0.267   0.0547    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 305,245
Number of extensions: 10764
Number of successful extensions: 37
Number of sequences better than 10.0: 1
Number of HSP's gapped: 35
Number of HSP's successfully gapped: 10
Length of query: 93
Length of database: 2,407,596
Length adjustment: 56
Effective length of query: 37
Effective length of database: 1,638,716
Effective search space: 60632492
Effective search space used: 60632492
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.3 bits)