BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7981
(216 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1A4I|A Chain A, Human Tetrahydrofolate Dehydrogenase CYCLOHYDROLASE
pdb|1A4I|B Chain B, Human Tetrahydrofolate Dehydrogenase CYCLOHYDROLASE
Length = 301
Score = 226 bits (575), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 112/203 (55%), Positives = 144/203 (70%), Gaps = 1/203 (0%)
Query: 10 AQILSGTAVSGDIXXXXXXXXXXXXXXXPDFEPGLAIVQVGGREDSNVYIRMKMKAAKEI 69
A+IL+G +S I P F P LAI+QVG R+DSN+YI +K+KAA+EI
Sbjct: 4 AEILNGKEISAQIRARLKNQVTQLKEQVPGFTPRLAILQVGNRDDSNLYINVKLKAAEEI 63
Query: 70 GIDAQHVKLPRSITEIELLSRLKKLNEDPSVHGIIVQMPLDSDNDINAMLVTDSVSPEKD 129
GI A H+KLPR+ TE E++ + LNED +VHG +VQ+PLDS+N IN V ++++PEKD
Sbjct: 64 GIKATHIKLPRTTTESEVMKYITSLNEDSTVHGFLVQLPLDSENSINTEEVINAIAPEKD 123
Query: 130 VDGLNTINEGRVAIGDMNG-FIPCTPNGVLELIKRTNVTIAGTNAVVLGRSKIVGTPAAE 188
VDGL +IN GR+A GD+N FIPCTP G LELIK T V IAG +AVV+GRSKIVG P +
Sbjct: 124 VDGLTSINAGRLARGDLNDCFIPCTPKGCLELIKETGVPIAGRHAVVVGRSKIVGAPMHD 183
Query: 189 LLKWKHATVTVCHSKTKNIQDVV 211
LL W +ATVT CHSKT ++ + V
Sbjct: 184 LLLWNNATVTTCHSKTAHLDEEV 206
>pdb|1DIA|A Chain A, Human Methylenetetrahydrofolate Dehydrogenase
Cyclohydrolase Complexed With Nadp And Inhibitor
Ly249543
pdb|1DIA|B Chain B, Human Methylenetetrahydrofolate Dehydrogenase
Cyclohydrolase Complexed With Nadp And Inhibitor
Ly249543
pdb|1DIB|A Chain A, Human Methylenetetrahydrofolate Dehydrogenase
Cyclohydrolase Complexed With Nadp And Inhibitor
Ly345899
pdb|1DIB|B Chain B, Human Methylenetetrahydrofolate Dehydrogenase
Cyclohydrolase Complexed With Nadp And Inhibitor
Ly345899
pdb|1DIG|A Chain A, Human Methylenetetrahydrofolate Dehydrogenase
Cyclohydrolase Complexed With Nadp And Inhibitor
Ly374571
pdb|1DIG|B Chain B, Human Methylenetetrahydrofolate Dehydrogenase
Cyclohydrolase Complexed With Nadp And Inhibitor
Ly374571
Length = 306
Score = 225 bits (574), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 112/203 (55%), Positives = 144/203 (70%), Gaps = 1/203 (0%)
Query: 10 AQILSGTAVSGDIXXXXXXXXXXXXXXXPDFEPGLAIVQVGGREDSNVYIRMKMKAAKEI 69
A+IL+G +S I P F P LAI+QVG R+DSN+YI +K+KAA+EI
Sbjct: 4 AEILNGKEISAQIRARLKNQVTQLKEQVPGFTPRLAILQVGNRDDSNLYINVKLKAAEEI 63
Query: 70 GIDAQHVKLPRSITEIELLSRLKKLNEDPSVHGIIVQMPLDSDNDINAMLVTDSVSPEKD 129
GI A H+KLPR+ TE E++ + LNED +VHG +VQ+PLDS+N IN V ++++PEKD
Sbjct: 64 GIKATHIKLPRTTTESEVMKYITSLNEDSTVHGFLVQLPLDSENSINTEEVINAIAPEKD 123
Query: 130 VDGLNTINEGRVAIGDMNG-FIPCTPNGVLELIKRTNVTIAGTNAVVLGRSKIVGTPAAE 188
VDGL +IN GR+A GD+N FIPCTP G LELIK T V IAG +AVV+GRSKIVG P +
Sbjct: 124 VDGLTSINAGRLARGDLNDCFIPCTPKGCLELIKETGVPIAGRHAVVVGRSKIVGAPMHD 183
Query: 189 LLKWKHATVTVCHSKTKNIQDVV 211
LL W +ATVT CHSKT ++ + V
Sbjct: 184 LLLWNNATVTTCHSKTAHLDEEV 206
>pdb|4B4U|A Chain A, Crystal Structure Of Acinetobacter Baumannii N5,
N10-Methylenetetrahydrofolate
Dehydrogenase-Cyclohydrolase (Fold) Complexed With Nadp
Cofactor
pdb|4B4U|B Chain B, Crystal Structure Of Acinetobacter Baumannii N5,
N10-Methylenetetrahydrofolate
Dehydrogenase-Cyclohydrolase (Fold) Complexed With Nadp
Cofactor
pdb|4B4V|A Chain A, Crystal Structure Of Acinetobacter Baumannii N5, N10-
Methylenetetrahydrofolate Dehydrogenase-Cyclohydrolase
(Fold) Complexed With Nadp Cofactor And Inhibitor
Ly354899
pdb|4B4V|B Chain B, Crystal Structure Of Acinetobacter Baumannii N5, N10-
Methylenetetrahydrofolate Dehydrogenase-Cyclohydrolase
(Fold) Complexed With Nadp Cofactor And Inhibitor
Ly354899
pdb|4B4W|A Chain A, Crystal Structure Of Acinetobacter Baumannii N5,
N10-Methylenetetrahydrofolate
Dehydrogenase-Cyclohydrolase (Fold) Complexed With Nadp
Cofactor And An Inhibitor
pdb|4B4W|B Chain B, Crystal Structure Of Acinetobacter Baumannii N5,
N10-Methylenetetrahydrofolate
Dehydrogenase-Cyclohydrolase (Fold) Complexed With Nadp
Cofactor And An Inhibitor
Length = 303
Score = 140 bits (352), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 71/171 (41%), Positives = 113/171 (66%), Gaps = 3/171 (1%)
Query: 42 PGLAIVQVGGREDSNVYIRMKMKAAKEIGIDAQHVKLPRSITEIELLSRLKKLNEDPSVH 101
P LA + VG S Y+RMK A + +G+D+ ++LP+ T +LL+ ++KLN +P VH
Sbjct: 54 PILATILVGDDGASATYVRMKGNACRRVGMDSLKIELPQETTTEQLLAEIEKLNANPDVH 113
Query: 102 GIIVQMPLDSDNDINAMLVTDSVSPEKDVDGLNTINEGRVAIGDMNGFIPCTPNGVLELI 161
GI++Q P+ + D A D++S KDVDG+ + GR+A+G+ + TP G++ ++
Sbjct: 114 GILLQHPVPAQIDERACF--DAISLAKDVDGVTCLGFGRMAMGEA-AYGSATPAGIMTIL 170
Query: 162 KRTNVTIAGTNAVVLGRSKIVGTPAAELLKWKHATVTVCHSKTKNIQDVVK 212
K N+ IAG +AVV+GRS I+G P A +L +ATVT+CHS+T+N+ ++VK
Sbjct: 171 KENNIEIAGKHAVVVGRSAILGKPMAMMLLQANATVTICHSRTQNLPELVK 221
>pdb|4A26|A Chain A, The Crystal Structure Of Leishmania Major N5,N10-
Methylenetetrahydrofolate DehydrogenaseCYCLOHYDROLASE
pdb|4A26|B Chain B, The Crystal Structure Of Leishmania Major N5,N10-
Methylenetetrahydrofolate DehydrogenaseCYCLOHYDROLASE
Length = 300
Score = 135 bits (340), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 81/196 (41%), Positives = 111/196 (56%), Gaps = 3/196 (1%)
Query: 10 AQILSGTAVSGDIXXXXXXXXXXXXXXXPDFEPGLAIVQVGGREDSNVYIRMKMKAAKEI 69
AQI+ G A++ I PGLA + VG R DS Y+++K KAA E+
Sbjct: 6 AQIIDGKAIAAAIRSELKDKVAALRELYGGRVPGLASIIVGQRMDSKKYVQLKHKAAAEV 65
Query: 70 GIDAQHVKLPRSITEIELLSRLKKLNEDPSVHGIIVQMPLDSDNDINAMLVTDSVSPEKD 129
G+ + +V+LP I++ L ++KLN DP+ HGIIVQ+PL +N + + P KD
Sbjct: 66 GMASFNVELPEDISQEVLEVNVEKLNNDPNCHGIIVQLPL--PKHLNENRAIEKIHPHKD 123
Query: 130 VDGLNTINEGRVAI-GDMNGFIPCTPNGVLELIKRTNVTIAGTNAVVLGRSKIVGTPAAE 188
D L +N G + G F PCT GV+ L+KR + +AG AVVLGRS IVG P A
Sbjct: 124 ADALLPVNVGLLHYKGREPPFTPCTAKGVIVLLKRCGIEMAGKRAVVLGRSNIVGAPVAA 183
Query: 189 LLKWKHATVTVCHSKT 204
LL ++ATVT+ HS T
Sbjct: 184 LLMKENATVTIVHSGT 199
>pdb|3P2O|A Chain A, Crystal Structure Of Fold Bifunctional Protein From
Campylobacter Jejuni
pdb|3P2O|B Chain B, Crystal Structure Of Fold Bifunctional Protein From
Campylobacter Jejuni
Length = 285
Score = 132 bits (333), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 73/169 (43%), Positives = 104/169 (61%), Gaps = 2/169 (1%)
Query: 40 FEPGLAIVQVGGREDSNVYIRMKMKAAKEIGIDAQHVKLPRSITEIELLSRLKKLNEDPS 99
E LA++ VG S Y++ K KA +E GI + L +IT+ ELL+ + LN D S
Sbjct: 32 IESCLAVILVGDNPASQTYVKSKAKACEECGIKSLVYHLNENITQNELLALINTLNHDDS 91
Query: 100 VHGIIVQMPLDSDNDINAMLVTDSVSPEKDVDGLNTINEGRVAIGDMNGFIPCTPNGVLE 159
VHGI+VQ+PL + I L+ +S+ KDVDG + IN G + +G +GF+PCTP GV +
Sbjct: 92 VHGILVQLPLP--DHICKDLILESIISSKDVDGFHPINVGYLNLGLESGFLPCTPLGVXK 149
Query: 160 LIKRTNVTIAGTNAVVLGRSKIVGTPAAELLKWKHATVTVCHSKTKNIQ 208
L+K + + G +AV++G S IVG P A L ATV+VCH KTK++
Sbjct: 150 LLKAYEIDLEGKDAVIIGASNIVGRPXATXLLNAGATVSVCHIKTKDLS 198
>pdb|3L07|A Chain A, Methylenetetrahydrofolate
DehydrogenaseMETHENYLTETRAHYDROFOLATE Cyclohydrolase,
Putative Bifunctional Protein Fold From Francisella
Tularensis.
pdb|3L07|B Chain B, Methylenetetrahydrofolate
DehydrogenaseMETHENYLTETRAHYDROFOLATE Cyclohydrolase,
Putative Bifunctional Protein Fold From Francisella
Tularensis
Length = 285
Score = 128 bits (321), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 68/167 (40%), Positives = 96/167 (57%), Gaps = 2/167 (1%)
Query: 42 PGLAIVQVGGREDSNVYIRMKMKAAKEIGIDAQHVKLPRSITEIELLSRLKKLNEDPSVH 101
P L + VG S Y+ K KA ++GID+Q + LP TE ELL + +LN D SVH
Sbjct: 35 PKLVAIIVGNDPASKTYVASKEKACAQVGIDSQVITLPEHTTESELLELIDQLNNDSSVH 94
Query: 102 GIIVQMPLDSDNDINAMLVTDSVSPEKDVDGLNTINEGRVAIGDMNGFIPCTPNGVLELI 161
I+VQ+PL + IN V S+ PEKDVDG + N GR+ + D CTP G++ ++
Sbjct: 95 AILVQLPLPAH--INKNNVIYSIKPEKDVDGFHPTNVGRLQLRDKKCLESCTPKGIMTML 152
Query: 162 KRTNVTIAGTNAVVLGRSKIVGTPAAELLKWKHATVTVCHSKTKNIQ 208
+ + G AVV+G S +VG P ++LL ATVT CH T +++
Sbjct: 153 REYGIKTEGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFTTDLK 199
>pdb|4A5O|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa N5, N10-
Methylenetetrahydrofolate Dehydrogenase-Cyclohydrolase
(Fold)
pdb|4A5O|B Chain B, Crystal Structure Of Pseudomonas Aeruginosa N5, N10-
Methylenetetrahydrofolate Dehydrogenase-Cyclohydrolase
(Fold)
pdb|4A5O|C Chain C, Crystal Structure Of Pseudomonas Aeruginosa N5, N10-
Methylenetetrahydrofolate Dehydrogenase-Cyclohydrolase
(Fold)
pdb|4A5O|D Chain D, Crystal Structure Of Pseudomonas Aeruginosa N5, N10-
Methylenetetrahydrofolate Dehydrogenase-Cyclohydrolase
(Fold)
Length = 286
Score = 123 bits (309), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 68/170 (40%), Positives = 103/170 (60%), Gaps = 3/170 (1%)
Query: 42 PGLAIVQVGGREDSNVYIRMKMKAAKEIGIDAQHVKLPRSITEIELLSRLKKLNEDPSVH 101
PGLA++ VG S VY+ K K +E+G +Q LP ++ +LL+ + +LN+DP++
Sbjct: 36 PGLAVILVGTDPASQVYVAHKRKDCEEVGFLSQAYDLPAETSQDDLLALIDRLNDDPAID 95
Query: 102 GIIVQMPLDSDNDINAMLVTDSVSPEKDVDGLNTINEGRVAIGDMNGFIPCTPNGVLELI 161
GI+VQ+PL + ++A L+ + + P+KDVDG + N GR+A M PCTP G++ L+
Sbjct: 96 GILVQLPLPA--HLDASLLLERIHPDKDVDGFHPYNIGRLA-QRMPLLRPCTPKGIMTLL 152
Query: 162 KRTNVTIAGTNAVVLGRSKIVGTPAAELLKWKHATVTVCHSKTKNIQDVV 211
T + G +AVV+G S IVG P A L TVTV H T+++ D V
Sbjct: 153 ASTGADLYGMDAVVVGASNIVGRPMALELLLGGCTVTVTHRFTRDLADHV 202
>pdb|1B0A|A Chain A, 5,10, Methylene-Tetrahydropholate
DehydrogenaseCYCLOHYDROLASE FROM E COLI
Length = 288
Score = 121 bits (304), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 68/172 (39%), Positives = 101/172 (58%), Gaps = 3/172 (1%)
Query: 42 PGLAIVQVGGREDSNVYIRMKMKAAKEIGIDAQHVKLPRSITEIELLSRLKKLNEDPSVH 101
PGLA+V VG S +Y+ K KA +E+G ++ LP + +E ELL + LN D ++
Sbjct: 34 PGLAVVLVGSNPASQIYVASKRKACEEVGFVSRSYDLPETTSEAELLELIDTLNADNTID 93
Query: 102 GIIVQMPLDSDNDINAMLVTDSVSPEKDVDGLNTINEGRVAIGDMNGFIPCTPNGVLELI 161
GI+VQ+PL + I+ + V + + P+KDVDG + N GR+ PCTP G++ L+
Sbjct: 94 GILVQLPLPA--GIDNVKVLERIHPDKDVDGFHPYNVGRLC-QRAPRLRPCTPRGIVTLL 150
Query: 162 KRTNVTIAGTNAVVLGRSKIVGTPAAELLKWKHATVTVCHSKTKNIQDVVKS 213
+R N+ G NAVV+G S IVG P + L T TV H TKN++ V++
Sbjct: 151 ERYNIDTFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFTKNLRHHVEN 202
>pdb|2C2X|A Chain A, Three Dimensional Structure Of Bifunctional
Methylenetetrahydrofolate Dehydrogenase-Cyclohydrolase
From Mycobacterium Tuberculosis
pdb|2C2X|B Chain B, Three Dimensional Structure Of Bifunctional
Methylenetetrahydrofolate Dehydrogenase-Cyclohydrolase
From Mycobacterium Tuberculosis
pdb|2C2Y|A Chain A, Three Dimensional Structure Of Bifunctional
Methylenetetrahydrofolate Dehydrogenase-Cyclohydrolase
From Mycobacterium Tuberculosis
Length = 281
Score = 115 bits (289), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 65/173 (37%), Positives = 99/173 (57%), Gaps = 5/173 (2%)
Query: 42 PGLAIVQVGGREDSNVYIRMKMKAAKEIGIDAQHVKLPRSITEIELLSRLKKLNEDPSVH 101
PGL + VG S Y+R K ++GI + LP I+ L + +LN +P
Sbjct: 33 PGLGTILVGDDPGSQAYVRGKHADCAKVGITSIRRDLPADISTATLNETIDELNANPDCT 92
Query: 102 GIIVQMPLDSDNDINAMLVTDSVSPEKDVDGLNTINEGRVAIGDMNGFIPCTPNGVLELI 161
G IVQ+PL D NA L + V P KD DGL+ N GR+ +G +PCTP G++ L+
Sbjct: 93 GYIVQLPLPKHLDENAAL--ERVDPAKDADGLHPTNLGRLVLG-TPAPLPCTPRGIVHLL 149
Query: 162 KRTNVTIAGTNAVVLGRSKIVGTPAAELL--KWKHATVTVCHSKTKNIQDVVK 212
+R +++IAG + VV+GR VG P LL + ++ATVT+CH+ T+++ + +
Sbjct: 150 RRYDISIAGAHVVVIGRGVTVGRPLGLLLTRRSENATVTLCHTGTRDLPALTR 202
>pdb|3NGL|A Chain A, Crystal Structure Of Bifunctional
5,10-Methylenetetrahydrofolate Dehydrogenase
CYCLOHYDROLASE FROM THERMOPLASMA ACIDOPHILUM
pdb|3NGL|C Chain C, Crystal Structure Of Bifunctional
5,10-Methylenetetrahydrofolate Dehydrogenase
CYCLOHYDROLASE FROM THERMOPLASMA ACIDOPHILUM
pdb|3NGX|A Chain A, Crystal Structure Of Bifunctional
5,10-Methylenetetrahydrofolate Dehydrogenase
CYCLOHYDROLASE FROM THERMOPLASMA ACIDOPHILUM
pdb|3NGX|B Chain B, Crystal Structure Of Bifunctional
5,10-Methylenetetrahydrofolate Dehydrogenase
CYCLOHYDROLASE FROM THERMOPLASMA ACIDOPHILUM
Length = 276
Score = 94.7 bits (234), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 55/174 (31%), Positives = 99/174 (56%), Gaps = 6/174 (3%)
Query: 40 FEPGLAIVQVGGREDSNVYIRMKMKAAKEIGIDAQHVKLPRSITEIELLSRLKKLNEDPS 99
EP L ++Q+G E +++Y R K++ K+IGI A ++ I+ +LL R+ L +DP
Sbjct: 26 LEPSLKLIQIGDNEAASIYARAKIRRGKKIGI-AVDLEKYDDISMKDLLKRIDDLAKDPQ 84
Query: 100 VHGIIVQMPLDSDNDINAMLVTDSVSPEKDVDGLNTINEGRVAIGDMNGFIPCTPNGVLE 159
++GI+++ PL D + ++ KDVD L+ N+G +A+ + +P TP V++
Sbjct: 85 INGIMIENPLPKGFDYYE--IVRNIPYYKDVDALSPYNQGLIAL-NREFLVPATPRAVID 141
Query: 160 LIKRTNVTIAGTNAVVLGRSKIVGTPAAELLKWKHATVTVCHSKTKNIQDVVKS 213
++ ++ RS +VG P + +L ++ TV+VCHSKTK+I + +S
Sbjct: 142 IMDYYGY--HENTVTIVNRSPVVGRPLSMMLLNRNYTVSVCHSKTKDIGSMTRS 193
>pdb|1EDZ|A Chain A, Structure Of The Nad-Dependent 5,10-
Methylenetetrahydrofolate Dehydrogenase From
Saccharomyces Cerevisiae
pdb|1EE9|A Chain A, Crystal Structure Of The Nad-Dependent 5,10-
Methylenetetrahydrofolate Dehydrogenase From
Saccharomyces Cerevisiae Complexed With Nad
Length = 320
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 54/120 (45%), Gaps = 19/120 (15%)
Query: 95 NEDPSVHGIIVQMPLDSDNDINAMLVTDSVSPEKDVDGLNTINEGRVAIG--------DM 146
N D SV+GI+V P+ + + V EKDV+GLN + + +
Sbjct: 87 NGDDSVNGIMVYFPVFGN--AQDQYLQQVVCKEKDVEGLNHVYYQNLYHNVRYLDKENRL 144
Query: 147 NGFIPCTPNGV---LELIKRTNV------TIAGTNAVVLGRSKIVGTPAAELLKWKHATV 197
+PCTP + LE +K N + G +V+ RS+IVG P A LL ATV
Sbjct: 145 KSILPCTPLAIVKILEFLKIYNNLLPEGNRLYGKKCIVINRSEIVGRPLAALLANDGATV 204
>pdb|1LU9|A Chain A, Structure Of Methylene-Tetrahydromethanopterin
Dehydrogenase From Methylobacterium Extorquens Am1
pdb|1LU9|B Chain B, Structure Of Methylene-Tetrahydromethanopterin
Dehydrogenase From Methylobacterium Extorquens Am1
pdb|1LU9|C Chain C, Structure Of Methylene-Tetrahydromethanopterin
Dehydrogenase From Methylobacterium Extorquens Am1
pdb|1LUA|A Chain A, Structure Of Methylene-Tetrahydromethanopterin
Dehydrogenase From Methylobacterium Extorquens Am1
Complexed With Nadp
pdb|1LUA|B Chain B, Structure Of Methylene-Tetrahydromethanopterin
Dehydrogenase From Methylobacterium Extorquens Am1
Complexed With Nadp
pdb|1LUA|C Chain C, Structure Of Methylene-Tetrahydromethanopterin
Dehydrogenase From Methylobacterium Extorquens Am1
Complexed With Nadp
Length = 287
Score = 32.0 bits (71), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 30/69 (43%)
Query: 145 DMNGFIPCTPNGVLELIKRTNVTIAGTNAVVLGRSKIVGTPAAELLKWKHATVTVCHSKT 204
D NG GV ++K ++ G AVVL + VG +A LL + A V +C K
Sbjct: 94 DSNGSNTTAAAGVALVVKAAGGSVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKL 153
Query: 205 KNIQDVVKS 213
Q S
Sbjct: 154 DKAQAAADS 162
>pdb|3V47|C Chain C, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|D Chain D, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 425
Score = 31.2 bits (69), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 64/157 (40%), Gaps = 21/157 (13%)
Query: 47 VQVGGREDSNVYIRMKMKAAKEIGIDAQHVKLPRSITEIELLSRLKKLNEDPSVHGIIVQ 106
+QVG + + I ++ K +G+D +V P+ T +L S K + + +
Sbjct: 105 IQVGANDGETITIDLQKIDVKSLGLDGFNVNGPKEATVGDLKSSFKNVTGYDTYAAGADK 164
Query: 107 MPLDSDNDINA-MLVTDSVSPEKDVDGLNTINEGRVAIGDMNGFIP---CTPNGVLELIK 162
+ DIN+ +VTD+V+P+K V + NG + N ++L K
Sbjct: 165 YRV----DINSGAVVTDAVAPDK------------VYVNAANGQLTTDDAENNTAVDLFK 208
Query: 163 RTNVTIAGTNAVVLGRSKIVGTPAAELLKWKHATVTV 199
T T AGT I G + +K T T+
Sbjct: 209 TTKST-AGTAEAKAIAGAIKGGKEGDTFDYKGVTFTI 244
>pdb|1K1X|A Chain A, Crystal Structure Of 4-Alpha-Glucanotransferase From
Thermococcus Litoralis
pdb|1K1X|B Chain B, Crystal Structure Of 4-Alpha-Glucanotransferase From
Thermococcus Litoralis
pdb|1K1Y|A Chain A, Crystal Structure Of Thermococcus Litoralis
4-Alpha-Glucanotransferase Complexed With Acarbose
pdb|1K1Y|B Chain B, Crystal Structure Of Thermococcus Litoralis
4-Alpha-Glucanotransferase Complexed With Acarbose
Length = 659
Score = 29.6 bits (65), Expect = 1.3, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Query: 40 FEPGLAIVQVGGREDSNVYIRMKMKAAKEIGIDAQHVKLPRSITEIELLSRLKK 93
+EP LA + +ED V I M A+++G DA+ V L + + EL+ L++
Sbjct: 86 YEPVLAAIP---KEDRLVQIEMLKDYARKLGYDAKGVWLTERVWQPELVKSLRE 136
>pdb|1K1W|A Chain A, Crystal Structure Of 4-Alpha-Glucanotransferase From
Thermococcus Litoralis
Length = 659
Score = 26.9 bits (58), Expect = 7.9, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Query: 40 FEPGLAIVQVGGREDSNVYIRMKMKAAKEIGIDAQHVKLPRSITEIELLSRLKK 93
+EP LA + +ED V I A+++G DA+ V L + + EL+ L++
Sbjct: 86 YEPVLAAIP---KEDRLVQIEXLKDYARKLGYDAKGVWLTERVWQPELVKSLRE 136
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.132 0.369
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,515,850
Number of Sequences: 62578
Number of extensions: 209312
Number of successful extensions: 443
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 412
Number of HSP's gapped (non-prelim): 19
length of query: 216
length of database: 14,973,337
effective HSP length: 95
effective length of query: 121
effective length of database: 9,028,427
effective search space: 1092439667
effective search space used: 1092439667
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 49 (23.5 bits)