Query psy7981
Match_columns 216
No_of_seqs 121 out of 1045
Neff 6.1
Searched_HMMs 46136
Date Fri Aug 16 23:47:14 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7981.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7981hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK14171 bifunctional 5,10-met 100.0 4.1E-73 9E-78 502.9 24.8 203 9-214 1-203 (288)
2 PRK14170 bifunctional 5,10-met 100.0 3.4E-73 7.3E-78 502.7 24.1 201 9-214 1-201 (284)
3 PLN02516 methylenetetrahydrofo 100.0 8E-73 1.7E-77 503.4 24.5 210 1-214 1-211 (299)
4 PRK14187 bifunctional 5,10-met 100.0 1.3E-72 2.9E-77 500.9 24.4 203 9-214 1-204 (294)
5 PLN02616 tetrahydrofolate dehy 100.0 1.2E-72 2.7E-77 510.9 24.4 204 8-214 71-275 (364)
6 COG0190 FolD 5,10-methylene-te 100.0 1.4E-72 2.9E-77 495.8 23.7 200 11-214 1-200 (283)
7 PRK14169 bifunctional 5,10-met 100.0 2.1E-72 4.6E-77 497.4 24.5 200 10-214 1-200 (282)
8 PLN02897 tetrahydrofolate dehy 100.0 1.8E-72 3.9E-77 507.7 24.2 204 8-214 54-258 (345)
9 PRK14190 bifunctional 5,10-met 100.0 1.7E-72 3.7E-77 498.7 23.6 202 8-214 1-202 (284)
10 PRK14172 bifunctional 5,10-met 100.0 1.9E-72 4.1E-77 496.9 23.7 202 9-214 1-202 (278)
11 PRK14166 bifunctional 5,10-met 100.0 2.5E-72 5.5E-77 496.9 24.5 200 11-214 2-201 (282)
12 PRK14177 bifunctional 5,10-met 100.0 2.2E-72 4.7E-77 497.5 24.1 203 8-214 1-203 (284)
13 PRK14182 bifunctional 5,10-met 100.0 2.4E-72 5.2E-77 496.8 24.3 199 11-214 2-201 (282)
14 PRK14193 bifunctional 5,10-met 100.0 2.7E-72 5.8E-77 497.2 24.2 202 8-214 1-204 (284)
15 PRK14167 bifunctional 5,10-met 100.0 2.6E-72 5.6E-77 500.0 23.9 201 9-214 1-205 (297)
16 PRK14173 bifunctional 5,10-met 100.0 4.6E-72 1E-76 496.3 23.4 199 8-214 1-199 (287)
17 PRK14176 bifunctional 5,10-met 100.0 8.2E-72 1.8E-76 494.5 24.0 203 8-214 6-208 (287)
18 PRK14168 bifunctional 5,10-met 100.0 9E-72 2E-76 496.5 24.1 204 8-214 1-209 (297)
19 PRK14186 bifunctional 5,10-met 100.0 1E-71 2.3E-76 496.1 24.3 202 9-214 1-202 (297)
20 PRK14185 bifunctional 5,10-met 100.0 1.2E-71 2.5E-76 494.7 24.0 200 11-214 2-205 (293)
21 PRK14183 bifunctional 5,10-met 100.0 1.4E-71 3.1E-76 491.7 24.0 200 11-214 2-201 (281)
22 PRK14181 bifunctional 5,10-met 100.0 1.6E-71 3.5E-76 492.6 23.9 196 12-214 2-201 (287)
23 PRK10792 bifunctional 5,10-met 100.0 1.5E-71 3.3E-76 492.5 23.7 203 8-214 1-203 (285)
24 PRK14180 bifunctional 5,10-met 100.0 2.1E-71 4.7E-76 491.0 24.4 201 11-214 2-202 (282)
25 PRK14184 bifunctional 5,10-met 100.0 4E-71 8.7E-76 490.1 23.9 200 11-214 2-205 (286)
26 PRK14189 bifunctional 5,10-met 100.0 5.7E-71 1.2E-75 489.2 24.0 202 8-214 1-202 (285)
27 PRK14191 bifunctional 5,10-met 100.0 3E-70 6.5E-75 484.3 23.3 200 11-214 2-201 (285)
28 PRK14175 bifunctional 5,10-met 100.0 1.1E-69 2.5E-74 481.2 23.3 202 8-214 1-202 (286)
29 PRK14179 bifunctional 5,10-met 100.0 2E-69 4.3E-74 479.1 24.2 202 9-214 1-202 (284)
30 PRK14174 bifunctional 5,10-met 100.0 1.1E-68 2.5E-73 476.6 24.3 201 11-214 2-207 (295)
31 PRK14194 bifunctional 5,10-met 100.0 1.5E-68 3.2E-73 476.6 24.0 202 8-214 2-203 (301)
32 PRK14178 bifunctional 5,10-met 100.0 2.8E-68 6.1E-73 470.5 23.2 195 12-214 2-196 (279)
33 PRK14188 bifunctional 5,10-met 100.0 7.2E-67 1.6E-71 465.6 24.1 202 9-214 1-202 (296)
34 KOG4230|consensus 100.0 2.6E-63 5.7E-68 465.9 20.2 205 8-214 1-206 (935)
35 PRK14192 bifunctional 5,10-met 100.0 3.2E-59 6.9E-64 414.6 21.3 203 8-214 1-203 (283)
36 KOG0089|consensus 100.0 6.7E-59 1.5E-63 404.6 19.0 203 9-214 7-220 (309)
37 PF00763 THF_DHG_CYH: Tetrahyd 100.0 1.1E-38 2.5E-43 249.5 11.7 117 11-131 1-117 (117)
38 cd01079 NAD_bind_m-THF_DH NAD 100.0 2.6E-33 5.6E-38 236.2 9.8 89 126-214 1-127 (197)
39 PF02882 THF_DHG_CYH_C: Tetrah 100.0 4.5E-30 9.8E-35 211.1 7.5 80 134-214 1-80 (160)
40 cd05212 NAD_bind_m-THF_DH_Cycl 99.9 2.1E-22 4.5E-27 162.4 7.6 68 147-214 5-72 (140)
41 cd01080 NAD_bind_m-THF_DH_Cycl 99.8 4E-20 8.7E-25 153.2 8.7 88 126-214 1-88 (168)
42 PRK00258 aroE shikimate 5-dehy 97.7 0.00024 5.3E-09 62.8 9.3 130 62-205 24-158 (278)
43 TIGR00507 aroE shikimate 5-deh 97.7 0.0003 6.4E-09 61.8 9.2 128 62-203 19-149 (270)
44 cd05191 NAD_bind_amino_acid_DH 97.5 0.00015 3.2E-09 53.1 4.7 50 152-202 1-55 (86)
45 PRK12549 shikimate 5-dehydroge 97.4 0.0022 4.8E-08 57.1 11.9 132 61-204 23-161 (284)
46 TIGR01809 Shik-DH-AROM shikima 97.4 0.0029 6.2E-08 56.3 12.1 143 46-203 8-158 (282)
47 PRK12548 shikimate 5-dehydroge 97.4 0.0013 2.7E-08 58.7 9.3 128 62-203 28-159 (289)
48 cd01075 NAD_bind_Leu_Phe_Val_D 97.3 0.00044 9.6E-09 58.5 5.7 58 151-209 3-66 (200)
49 PRK12550 shikimate 5-dehydroge 97.3 0.0037 8E-08 55.6 11.8 146 39-203 6-155 (272)
50 PRK09310 aroDE bifunctional 3- 97.1 0.003 6.6E-08 60.2 9.7 142 47-203 219-364 (477)
51 PTZ00075 Adenosylhomocysteinas 97.1 0.0011 2.3E-08 63.5 6.0 43 160-203 244-286 (476)
52 PRK12749 quinate/shikimate deh 97.1 0.0054 1.2E-07 54.9 10.1 129 61-203 25-157 (288)
53 PRK08306 dipicolinate synthase 96.8 0.0017 3.8E-08 58.1 5.0 53 152-205 133-186 (296)
54 PRK14027 quinate/shikimate deh 96.7 0.016 3.4E-07 51.8 10.2 130 61-202 22-159 (283)
55 PRK14804 ornithine carbamoyltr 96.5 0.039 8.5E-07 50.0 11.4 126 60-204 59-187 (311)
56 PRK14805 ornithine carbamoyltr 96.5 0.2 4.4E-06 45.3 15.9 125 60-205 54-182 (302)
57 PRK14031 glutamate dehydrogena 96.4 0.031 6.7E-07 53.2 10.7 53 148-201 202-259 (444)
58 TIGR02853 spore_dpaA dipicolin 96.4 0.0045 9.7E-08 55.4 4.6 53 152-205 132-185 (287)
59 PLN02520 bifunctional 3-dehydr 96.3 0.069 1.5E-06 51.7 12.5 139 47-202 256-410 (529)
60 COG0169 AroE Shikimate 5-dehyd 96.0 0.041 8.9E-07 49.4 8.9 129 61-205 24-161 (283)
61 TIGR00670 asp_carb_tr aspartat 95.7 1 2.2E-05 40.7 16.4 132 55-205 50-187 (301)
62 cd01078 NAD_bind_H4MPT_DH NADP 95.7 0.023 5.1E-07 47.1 5.5 46 157-202 15-60 (194)
63 PLN02342 ornithine carbamoyltr 95.6 0.91 2E-05 42.0 16.1 126 60-205 101-229 (348)
64 cd05313 NAD_bind_2_Glu_DH NAD( 95.6 0.03 6.6E-07 49.5 6.0 55 148-203 12-71 (254)
65 PRK01713 ornithine carbamoyltr 95.3 1.2 2.6E-05 40.8 15.8 123 61-204 63-191 (334)
66 PRK12562 ornithine carbamoyltr 95.3 1.7 3.6E-05 40.0 16.7 131 54-204 55-191 (334)
67 PRK02255 putrescine carbamoylt 95.3 1.4 3E-05 40.5 16.2 125 61-205 59-189 (338)
68 PF00670 AdoHcyase_NAD: S-aden 95.3 0.023 4.9E-07 47.2 4.0 49 153-202 5-54 (162)
69 cd01076 NAD_bind_1_Glu_DH NAD( 95.2 0.052 1.1E-06 47.0 6.1 55 148-203 5-64 (227)
70 PRK05476 S-adenosyl-L-homocyst 95.0 0.039 8.5E-07 52.2 5.2 52 151-203 192-244 (425)
71 TIGR00658 orni_carb_tr ornithi 94.9 1.3 2.9E-05 40.0 14.7 127 60-206 55-184 (304)
72 PRK03515 ornithine carbamoyltr 94.9 0.99 2.2E-05 41.5 14.0 137 44-204 48-191 (336)
73 PRK00856 pyrB aspartate carbam 94.8 0.58 1.3E-05 42.4 12.1 128 55-203 56-191 (305)
74 PRK09414 glutamate dehydrogena 94.7 0.11 2.4E-06 49.5 7.6 54 148-202 206-264 (445)
75 PRK10727 DNA-binding transcrip 94.7 2.7 5.8E-05 37.2 15.9 93 11-106 20-122 (343)
76 PRK07200 aspartate/ornithine c 94.5 0.7 1.5E-05 43.4 12.2 136 61-204 76-228 (395)
77 PRK10423 transcriptional repre 94.5 0.34 7.3E-06 42.3 9.7 88 11-106 17-119 (327)
78 PRK00779 ornithine carbamoyltr 94.5 3.2 6.8E-05 37.5 16.0 133 54-206 53-188 (304)
79 PRK14030 glutamate dehydrogena 94.5 0.18 4E-06 48.0 8.4 50 149-199 203-256 (445)
80 PRK09526 lacI lac repressor; R 94.4 0.52 1.1E-05 41.5 10.6 97 11-109 24-130 (342)
81 PF01488 Shikimate_DH: Shikima 94.3 0.026 5.7E-07 44.6 2.0 42 161-203 3-45 (135)
82 cd01065 NAD_bind_Shikimate_DH 94.3 0.098 2.1E-06 41.2 5.2 53 155-208 4-57 (155)
83 PRK06719 precorrin-2 dehydroge 94.2 0.057 1.2E-06 44.1 3.8 36 165-201 8-43 (157)
84 PLN02527 aspartate carbamoyltr 94.2 4.2 9E-05 36.8 16.5 131 55-204 50-188 (306)
85 PRK02102 ornithine carbamoyltr 94.2 4.1 8.8E-05 37.4 16.2 132 54-206 56-192 (331)
86 PRK05579 bifunctional phosphop 94.2 0.13 2.8E-06 48.2 6.6 53 152-204 168-238 (399)
87 TIGR01481 ccpA catabolite cont 94.1 3.6 7.8E-05 35.9 16.7 93 11-106 20-122 (329)
88 cd05211 NAD_bind_Glu_Leu_Phe_V 94.1 0.11 2.4E-06 44.7 5.5 51 153-204 2-57 (217)
89 PF13241 NAD_binding_7: Putati 94.0 0.038 8.3E-07 41.7 2.2 37 166-203 3-39 (103)
90 TIGR03316 ygeW probable carbam 94.0 1.2 2.6E-05 41.3 12.4 135 61-204 59-211 (357)
91 PRK06935 2-deoxy-D-gluconate 3 93.8 0.11 2.5E-06 44.1 5.0 37 167-203 12-48 (258)
92 PRK11891 aspartate carbamoyltr 93.7 1 2.3E-05 42.8 11.8 125 60-205 142-279 (429)
93 TIGR00936 ahcY adenosylhomocys 93.7 0.12 2.6E-06 48.6 5.4 51 152-203 176-227 (406)
94 PLN02477 glutamate dehydrogena 93.6 0.16 3.4E-06 48.0 6.0 54 149-203 181-239 (410)
95 PRK04284 ornithine carbamoyltr 93.6 2.9 6.3E-05 38.3 14.2 123 60-204 61-190 (332)
96 TIGR02417 fruct_sucro_rep D-fr 93.6 0.8 1.7E-05 40.1 10.2 93 11-106 18-123 (327)
97 PRK11303 DNA-binding transcrip 93.4 0.6 1.3E-05 40.9 9.0 93 11-106 19-124 (328)
98 PRK01438 murD UDP-N-acetylmura 93.3 0.12 2.7E-06 48.6 4.8 43 161-204 7-49 (480)
99 PRK13814 pyrB aspartate carbam 93.3 6.3 0.00014 35.8 17.0 124 61-204 62-194 (310)
100 PTZ00079 NADP-specific glutama 93.0 0.24 5.2E-06 47.3 6.2 53 150-203 213-270 (454)
101 PRK10014 DNA-binding transcrip 92.8 0.99 2.1E-05 39.7 9.6 89 11-107 25-128 (342)
102 PRK00257 erythronate-4-phospha 92.8 0.28 6E-06 45.8 6.2 43 159-202 105-147 (381)
103 cd00401 AdoHcyase S-adenosyl-L 92.7 0.21 4.5E-06 47.2 5.3 50 153-203 184-234 (413)
104 cd05311 NAD_bind_2_malic_enz N 92.6 0.2 4.3E-06 43.2 4.8 51 152-203 7-60 (226)
105 COG0334 GdhA Glutamate dehydro 92.6 0.32 6.8E-06 45.9 6.4 56 149-205 182-241 (411)
106 PRK10703 DNA-binding transcrip 92.5 1.1 2.5E-05 39.4 9.7 88 11-106 20-122 (341)
107 PRK06196 oxidoreductase; Provi 92.5 0.17 3.8E-06 44.7 4.3 44 164-207 20-63 (315)
108 PRK10401 DNA-binding transcrip 92.0 2.4 5.3E-05 37.5 11.1 88 11-106 20-122 (346)
109 PRK06841 short chain dehydroge 91.8 0.25 5.5E-06 41.6 4.4 37 166-202 11-47 (255)
110 PRK09492 treR trehalose repres 91.1 2.1 4.5E-05 37.2 9.6 88 11-106 23-125 (315)
111 PRK15438 erythronate-4-phospha 91.0 0.37 8E-06 45.0 4.9 44 158-202 104-147 (378)
112 PRK05854 short chain dehydroge 91.0 0.28 6.1E-06 43.6 4.0 37 166-202 10-46 (313)
113 PRK07424 bifunctional sterol d 90.7 0.3 6.4E-06 45.9 4.1 44 165-208 173-216 (406)
114 PRK05866 short chain dehydroge 90.7 0.31 6.6E-06 42.9 3.9 41 165-205 35-75 (293)
115 PRK08192 aspartate carbamoyltr 90.7 14 0.00029 34.1 15.8 126 61-204 61-196 (338)
116 PRK06701 short chain dehydroge 90.5 0.42 9E-06 42.0 4.7 39 166-204 42-80 (290)
117 PRK06720 hypothetical protein; 90.5 0.43 9.2E-06 39.2 4.4 38 166-203 12-49 (169)
118 TIGR00521 coaBC_dfp phosphopan 90.5 0.71 1.5E-05 43.2 6.3 54 151-204 163-235 (390)
119 PF00731 AIRC: AIR carboxylase 90.4 2.4 5.2E-05 34.7 8.7 63 42-107 1-63 (150)
120 PRK06197 short chain dehydroge 90.3 0.31 6.8E-06 42.7 3.7 37 167-203 13-49 (306)
121 PRK02929 L-arabinose isomerase 90.3 1 2.3E-05 43.5 7.4 45 71-115 44-88 (499)
122 PLN02253 xanthoxin dehydrogena 90.2 0.4 8.6E-06 41.2 4.2 37 167-203 15-51 (280)
123 PLN02494 adenosylhomocysteinas 89.7 0.51 1.1E-05 45.4 4.8 51 152-203 235-286 (477)
124 PRK14987 gluconate operon tran 89.5 3.3 7.1E-05 36.3 9.6 88 11-106 24-126 (331)
125 PRK06128 oxidoreductase; Provi 89.5 0.51 1.1E-05 41.4 4.4 36 167-202 52-87 (300)
126 PRK12480 D-lactate dehydrogena 89.5 0.68 1.5E-05 42.2 5.3 37 166-203 142-178 (330)
127 PRK04523 N-acetylornithine car 89.3 14 0.0003 33.9 13.7 172 12-202 6-207 (335)
128 PLN00141 Tic62-NAD(P)-related 89.1 0.51 1.1E-05 40.2 3.9 35 167-201 14-48 (251)
129 PRK07985 oxidoreductase; Provi 88.8 0.66 1.4E-05 40.8 4.5 36 167-202 46-81 (294)
130 COG0373 HemA Glutamyl-tRNA red 88.6 0.87 1.9E-05 43.1 5.4 49 153-202 161-210 (414)
131 COG2072 TrkA Predicted flavopr 88.5 0.58 1.3E-05 44.2 4.3 36 166-202 171-206 (443)
132 PF13738 Pyr_redox_3: Pyridine 88.5 0.58 1.2E-05 38.1 3.7 36 167-203 164-199 (203)
133 PRK15181 Vi polysaccharide bio 87.5 0.89 1.9E-05 40.9 4.7 41 164-204 9-49 (348)
134 cd03557 L-arabinose_isomerase 87.4 1.6 3.4E-05 42.2 6.4 45 71-115 38-82 (484)
135 PLN02928 oxidoreductase family 87.3 1.3 2.7E-05 40.7 5.6 38 165-203 154-191 (347)
136 PRK13376 pyrB bifunctional asp 87.3 31 0.00066 33.8 15.2 139 61-206 67-213 (525)
137 PRK13243 glyoxylate reductase; 87.1 0.86 1.9E-05 41.5 4.3 38 165-203 145-182 (333)
138 PRK05562 precorrin-2 dehydroge 87.1 0.85 1.9E-05 39.6 4.1 45 165-210 20-65 (223)
139 PF02826 2-Hacid_dh_C: D-isome 87.1 0.81 1.8E-05 37.6 3.8 42 164-206 30-71 (178)
140 PLN02780 ketoreductase/ oxidor 87.0 0.57 1.2E-05 42.0 3.1 40 169-208 52-91 (320)
141 cd00578 L-fuc_L-ara-isomerases 87.0 2.3 5.1E-05 40.0 7.3 71 42-115 1-79 (452)
142 PRK11041 DNA-binding transcrip 86.8 8.4 0.00018 33.1 10.2 86 18-106 4-98 (309)
143 PRK00676 hemA glutamyl-tRNA re 86.7 1.4 3.1E-05 40.5 5.6 48 154-203 159-207 (338)
144 PRK07831 short chain dehydroge 86.6 1.1 2.4E-05 38.1 4.5 42 167-208 14-56 (262)
145 PRK12367 short chain dehydroge 86.5 0.89 1.9E-05 39.1 3.9 39 166-204 10-48 (245)
146 PRK07201 short chain dehydroge 86.1 0.77 1.7E-05 44.5 3.7 42 167-208 368-409 (657)
147 TIGR02405 trehalos_R_Ecol treh 85.8 9.4 0.0002 33.2 10.2 93 11-106 20-122 (311)
148 PF00070 Pyr_redox: Pyridine n 85.6 1.1 2.4E-05 31.7 3.4 33 172-205 1-33 (80)
149 COG0281 SfcA Malic enzyme [Ene 85.5 3.9 8.4E-05 38.9 7.8 129 59-204 103-235 (432)
150 COG1609 PurR Transcriptional r 85.3 28 0.00061 31.4 13.3 181 11-202 19-245 (333)
151 PRK06436 glycerate dehydrogena 85.0 1.9 4.2E-05 38.9 5.5 36 166-202 118-153 (303)
152 COG0499 SAM1 S-adenosylhomocys 85.0 1.7 3.7E-05 40.7 5.1 49 153-202 191-240 (420)
153 PRK06484 short chain dehydroge 84.2 1.2 2.6E-05 42.0 3.9 42 167-208 266-307 (520)
154 PRK12862 malic enzyme; Reviewe 84.2 5.6 0.00012 40.5 8.8 127 60-203 98-228 (763)
155 TIGR01035 hemA glutamyl-tRNA r 84.1 1.9 4.1E-05 40.4 5.2 49 154-203 164-213 (417)
156 PRK07574 formate dehydrogenase 83.9 2.1 4.5E-05 40.1 5.3 37 166-203 188-224 (385)
157 PRK08605 D-lactate dehydrogena 83.9 2 4.3E-05 39.1 5.1 37 165-202 141-178 (332)
158 PRK07232 bifunctional malic en 83.1 6.6 0.00014 40.0 8.8 128 59-203 89-220 (752)
159 PLN02686 cinnamoyl-CoA reducta 82.5 1.6 3.5E-05 39.8 4.0 36 165-200 48-83 (367)
160 PLN02572 UDP-sulfoquinovose sy 82.4 1.6 3.6E-05 41.0 4.0 35 167-201 44-78 (442)
161 PRK13940 glutamyl-tRNA reducta 82.3 2.9 6.2E-05 39.5 5.6 50 153-203 164-214 (414)
162 TIGR02632 RhaD_aldol-ADH rhamn 82.0 1.6 3.4E-05 43.6 3.9 38 167-204 411-448 (676)
163 TIGR01327 PGDH D-3-phosphoglyc 82.0 2.7 5.8E-05 40.7 5.4 38 165-203 133-170 (525)
164 PRK15469 ghrA bifunctional gly 81.5 3.3 7.1E-05 37.5 5.5 36 166-202 132-167 (312)
165 PRK11790 D-3-phosphoglycerate 81.3 3.1 6.7E-05 39.1 5.5 38 165-203 146-183 (409)
166 PRK08324 short chain dehydroge 80.6 1.8 4E-05 42.9 3.9 41 167-207 419-459 (681)
167 PRK00141 murD UDP-N-acetylmura 80.5 2.2 4.7E-05 40.6 4.2 36 167-203 12-47 (473)
168 COG0078 ArgF Ornithine carbamo 80.3 3.3 7.2E-05 37.7 5.0 119 63-204 63-187 (310)
169 PRK14982 acyl-ACP reductase; P 80.2 3.5 7.5E-05 38.1 5.3 53 155-207 140-194 (340)
170 PLN02427 UDP-apiose/xylose syn 80.2 2.7 5.8E-05 38.2 4.5 41 164-204 8-49 (386)
171 TIGR01316 gltA glutamate synth 80.0 2.2 4.7E-05 40.1 4.0 37 168-205 270-306 (449)
172 KOG1201|consensus 80.0 3.1 6.8E-05 37.8 4.8 48 165-212 33-80 (300)
173 PRK04148 hypothetical protein; 79.8 5.4 0.00012 32.0 5.6 44 159-204 6-49 (134)
174 PF00208 ELFV_dehydrog: Glutam 79.8 3.3 7.2E-05 36.2 4.8 51 149-200 6-61 (244)
175 PLN02695 GDP-D-mannose-3',5'-e 79.6 2.3 4.9E-05 38.8 3.9 35 169-203 20-54 (370)
176 PLN02206 UDP-glucuronate decar 79.5 2.8 6E-05 39.6 4.5 38 165-202 114-151 (442)
177 cd06320 PBP1_allose_binding Pe 79.2 10 0.00023 31.8 7.6 64 44-109 2-66 (275)
178 PRK13581 D-3-phosphoglycerate 78.9 3.7 8E-05 39.8 5.3 37 165-202 135-171 (526)
179 PRK05928 hemD uroporphyrinogen 78.8 13 0.00029 31.0 8.1 129 62-204 16-158 (249)
180 PLN03209 translocon at the inn 78.7 2.7 5.8E-05 41.5 4.2 40 168-207 78-117 (576)
181 PRK05855 short chain dehydroge 78.6 2.4 5.3E-05 39.8 3.8 43 166-208 311-353 (582)
182 PRK00045 hemA glutamyl-tRNA re 78.3 3.4 7.4E-05 38.7 4.7 49 154-203 166-215 (423)
183 PRK08261 fabG 3-ketoacyl-(acyl 78.2 2.8 6.1E-05 39.0 4.1 36 167-202 207-242 (450)
184 PLN02172 flavin-containing mon 77.9 2.8 6.2E-05 39.8 4.1 37 167-204 201-237 (461)
185 PRK12831 putative oxidoreducta 77.9 2.8 6E-05 39.8 4.0 37 168-205 279-315 (464)
186 PRK06932 glycerate dehydrogena 77.6 4.7 0.0001 36.4 5.3 35 166-201 143-177 (314)
187 cd06300 PBP1_ABC_sugar_binding 77.5 12 0.00025 31.5 7.4 56 52-108 11-69 (272)
188 PF04392 ABC_sub_bind: ABC tra 77.0 20 0.00043 31.5 9.0 59 42-105 132-190 (294)
189 PRK15409 bifunctional glyoxyla 76.8 5.2 0.00011 36.3 5.3 38 165-203 140-178 (323)
190 COG0111 SerA Phosphoglycerate 76.3 4.5 9.8E-05 36.9 4.8 41 164-205 136-176 (324)
191 PLN02657 3,8-divinyl protochlo 76.1 3.7 8.1E-05 37.9 4.2 41 164-204 54-94 (390)
192 PLN00016 RNA-binding protein; 75.3 4.4 9.5E-05 36.9 4.5 38 168-205 50-91 (378)
193 KOG1208|consensus 75.3 4.9 0.00011 36.5 4.7 41 164-204 29-69 (314)
194 cd05188 MDR Medium chain reduc 75.1 8.2 0.00018 31.9 5.8 54 149-203 114-167 (271)
195 PRK08410 2-hydroxyacid dehydro 75.0 6.4 0.00014 35.5 5.4 36 166-202 141-176 (311)
196 KOG1200|consensus 74.4 4.9 0.00011 35.1 4.2 41 168-208 12-52 (256)
197 PRK10339 DNA-binding transcrip 74.2 16 0.00036 31.9 7.7 84 11-106 20-121 (327)
198 PRK06487 glycerate dehydrogena 74.2 6.9 0.00015 35.4 5.4 36 166-202 144-179 (317)
199 cd05213 NAD_bind_Glutamyl_tRNA 73.9 5.6 0.00012 35.7 4.7 49 153-202 161-210 (311)
200 cd06271 PBP1_AglR_RafR_like Li 73.4 32 0.00069 28.5 9.0 54 52-108 15-68 (268)
201 PF13407 Peripla_BP_4: Peripla 73.3 13 0.00029 30.9 6.6 59 54-116 12-70 (257)
202 PRK13403 ketol-acid reductoiso 73.2 4 8.6E-05 37.7 3.6 37 167-204 13-49 (335)
203 PF01861 DUF43: Protein of unk 72.9 8.4 0.00018 34.0 5.4 51 150-202 23-75 (243)
204 cd01840 SGNH_hydrolase_yrhL_li 72.7 44 0.00095 26.1 9.7 73 25-101 36-112 (150)
205 KOG3135|consensus 72.2 11 0.00025 31.8 5.8 57 42-99 2-58 (203)
206 cd06354 PBP1_BmpA_PnrA_like Pe 72.0 17 0.00036 31.0 7.0 61 44-108 2-66 (265)
207 PLN03139 formate dehydrogenase 72.0 5 0.00011 37.6 4.0 38 165-203 194-231 (386)
208 TIGR00518 alaDH alanine dehydr 71.6 4.7 0.0001 37.3 3.7 35 168-203 165-199 (370)
209 cd08295 double_bond_reductase_ 71.6 9.5 0.00021 33.7 5.6 52 150-201 132-183 (338)
210 PRK13982 bifunctional SbtC-lik 71.4 8.9 0.00019 37.0 5.7 52 153-204 234-306 (475)
211 PLN00203 glutamyl-tRNA reducta 71.4 6.7 0.00014 38.2 4.8 50 153-203 247-299 (519)
212 TIGR03366 HpnZ_proposed putati 70.9 9.2 0.0002 33.1 5.3 51 149-201 101-152 (280)
213 PF00743 FMO-like: Flavin-bind 70.7 4.3 9.3E-05 39.4 3.4 37 167-204 180-216 (531)
214 cd06312 PBP1_ABC_sugar_binding 70.6 20 0.00043 30.2 7.2 53 52-106 12-64 (271)
215 cd08289 MDR_yhfp_like Yhfp put 70.1 9.4 0.0002 33.1 5.2 50 153-202 130-179 (326)
216 PRK09754 phenylpropionate diox 69.9 6.3 0.00014 36.1 4.2 35 169-204 143-177 (396)
217 PRK12769 putative oxidoreducta 69.8 5.8 0.00012 39.2 4.1 38 167-205 465-503 (654)
218 PF10727 Rossmann-like: Rossma 69.8 6.2 0.00013 31.2 3.6 35 170-205 10-44 (127)
219 PRK07688 thiamine/molybdopteri 69.6 5.8 0.00013 36.3 3.9 45 167-212 21-66 (339)
220 cd01835 SGNH_hydrolase_like_3 69.5 57 0.0012 26.2 10.1 96 40-143 68-185 (193)
221 PLN02586 probable cinnamyl alc 69.4 15 0.00033 33.1 6.5 53 149-202 163-215 (360)
222 cd08292 ETR_like_2 2-enoyl thi 69.2 12 0.00026 32.3 5.6 53 149-202 120-172 (324)
223 PRK11749 dihydropyrimidine deh 69.0 10 0.00022 35.6 5.4 36 169-205 272-308 (457)
224 PRK12475 thiamine/molybdopteri 68.6 4.8 0.0001 36.9 3.1 41 165-206 19-60 (338)
225 cd06292 PBP1_LacI_like_10 Liga 68.0 52 0.0011 27.4 9.2 56 51-109 10-65 (273)
226 PRK04965 NADH:flavorubredoxin 68.0 6.8 0.00015 35.5 4.0 36 169-205 140-175 (377)
227 PRK12779 putative bifunctional 67.7 6.3 0.00014 41.0 4.1 38 167-205 444-481 (944)
228 PLN02306 hydroxypyruvate reduc 67.5 12 0.00026 35.0 5.5 37 165-202 160-197 (386)
229 cd08294 leukotriene_B4_DH_like 67.1 15 0.00032 31.9 5.7 52 150-201 124-175 (329)
230 cd06277 PBP1_LacI_like_1 Ligan 67.1 41 0.00088 28.1 8.3 54 52-108 14-67 (268)
231 PLN03154 putative allyl alcoho 66.9 15 0.00033 33.0 6.0 52 150-201 139-190 (348)
232 PRK10262 thioredoxin reductase 66.6 7.8 0.00017 34.2 4.0 36 168-204 144-179 (321)
233 cd06286 PBP1_CcpB_like Ligand- 66.5 42 0.00091 27.8 8.3 54 51-107 10-63 (260)
234 cd06273 PBP1_GntR_like_1 This 66.2 37 0.00081 28.2 7.9 52 52-106 11-62 (268)
235 PF12683 DUF3798: Protein of u 66.1 19 0.00041 32.4 6.2 67 47-115 7-76 (275)
236 PRK12814 putative NADPH-depend 66.0 11 0.00025 37.3 5.3 38 167-205 320-358 (652)
237 PRK12770 putative glutamate sy 66.0 7.2 0.00016 35.1 3.7 36 168-204 170-206 (352)
238 TIGR02717 AcCoA-syn-alpha acet 65.9 65 0.0014 30.5 10.2 64 40-108 294-379 (447)
239 cd08266 Zn_ADH_like1 Alcohol d 65.8 17 0.00036 31.2 5.8 35 168-202 165-199 (342)
240 cd08253 zeta_crystallin Zeta-c 65.7 16 0.00034 31.0 5.6 53 150-202 125-177 (325)
241 COG0403 GcvP Glycine cleavage 65.6 6.4 0.00014 37.5 3.3 66 56-131 175-240 (450)
242 cd06267 PBP1_LacI_sugar_bindin 65.3 51 0.0011 26.8 8.4 56 51-109 10-65 (264)
243 PRK11749 dihydropyrimidine deh 64.8 10 0.00022 35.6 4.5 128 63-203 39-172 (457)
244 cd06303 PBP1_LuxPQ_Quorum_Sens 64.7 24 0.00053 30.0 6.6 62 44-106 2-67 (280)
245 cd06289 PBP1_MalI_like Ligand- 64.7 49 0.0011 27.3 8.3 54 52-108 11-64 (268)
246 PF01220 DHquinase_II: Dehydro 64.6 23 0.00049 28.8 5.9 57 58-124 30-88 (140)
247 cd01485 E1-1_like Ubiquitin ac 64.6 6.4 0.00014 33.1 2.9 42 167-209 16-58 (198)
248 cd06296 PBP1_CatR_like Ligand- 64.4 54 0.0012 27.2 8.6 55 52-109 11-65 (270)
249 PF02610 Arabinose_Isome: L-ar 64.3 7.9 0.00017 36.1 3.6 72 71-144 44-124 (359)
250 PRK11199 tyrA bifunctional cho 64.1 14 0.00029 34.2 5.2 45 169-213 97-142 (374)
251 cd06282 PBP1_GntR_like_2 Ligan 64.1 45 0.00097 27.5 8.0 52 52-106 11-62 (266)
252 TIGR02825 B4_12hDH leukotriene 64.0 19 0.0004 31.6 5.8 53 150-202 119-171 (325)
253 cd05288 PGDH Prostaglandin deh 63.9 18 0.0004 31.3 5.7 53 150-202 126-178 (329)
254 COG0492 TrxB Thioredoxin reduc 63.8 8.2 0.00018 34.9 3.6 38 167-205 140-177 (305)
255 PRK12861 malic enzyme; Reviewe 63.8 21 0.00045 36.5 6.8 128 60-204 94-225 (764)
256 PRK13656 trans-2-enoyl-CoA red 63.8 18 0.0004 34.1 6.0 36 166-202 37-74 (398)
257 cd08231 MDR_TM0436_like Hypoth 63.7 18 0.00039 32.2 5.8 53 149-202 157-210 (361)
258 TIGR01162 purE phosphoribosyla 63.7 39 0.00084 27.9 7.2 58 47-106 3-60 (156)
259 cd06325 PBP1_ABC_uncharacteriz 63.4 41 0.00089 28.1 7.7 62 44-106 2-67 (281)
260 PRK10936 TMAO reductase system 63.3 39 0.00085 30.1 7.9 65 43-109 48-113 (343)
261 COG0011 Uncharacterized conser 63.3 20 0.00043 27.5 5.1 55 43-97 6-63 (100)
262 cd06278 PBP1_LacI_like_2 Ligan 63.2 84 0.0018 25.8 10.2 53 52-108 11-63 (266)
263 PRK12778 putative bifunctional 63.1 7.1 0.00015 39.3 3.3 37 168-205 568-605 (752)
264 cd08270 MDR4 Medium chain dehy 63.0 19 0.00042 30.7 5.7 53 149-202 113-165 (305)
265 PLN02166 dTDP-glucose 4,6-dehy 63.0 10 0.00022 35.8 4.2 39 165-203 115-153 (436)
266 cd06305 PBP1_methylthioribose_ 62.5 44 0.00096 27.8 7.7 55 51-108 10-64 (273)
267 KOG2250|consensus 62.1 39 0.00084 32.9 7.9 81 118-199 169-279 (514)
268 PRK12771 putative glutamate sy 61.8 9.8 0.00021 36.8 4.0 107 78-203 53-169 (564)
269 cd06310 PBP1_ABC_sugar_binding 61.5 43 0.00092 28.0 7.4 49 59-109 18-66 (273)
270 cd01575 PBP1_GntR Ligand-bindi 61.4 39 0.00085 27.9 7.1 54 51-107 10-63 (268)
271 cd05282 ETR_like 2-enoyl thioe 61.1 19 0.00042 30.9 5.3 52 150-201 119-170 (323)
272 cd06306 PBP1_TorT-like TorT-li 61.0 43 0.00092 28.3 7.4 54 52-106 11-64 (268)
273 TIGR02354 thiF_fam2 thiamine b 60.9 7.5 0.00016 32.8 2.6 37 167-204 18-55 (200)
274 PF08659 KR: KR domain; Inter 60.6 27 0.00058 28.4 5.8 63 46-109 28-91 (181)
275 PF07287 DUF1446: Protein of u 60.6 84 0.0018 29.3 9.7 69 18-92 52-120 (362)
276 cd01830 XynE_like SGNH_hydrola 60.6 50 0.0011 27.0 7.5 40 41-80 74-129 (204)
277 cd01536 PBP1_ABC_sugar_binding 60.5 50 0.0011 27.0 7.6 60 44-106 2-62 (267)
278 KOG1210|consensus 60.4 14 0.0003 34.0 4.4 39 171-209 34-72 (331)
279 cd01537 PBP1_Repressors_Sugar_ 60.3 90 0.002 25.2 11.2 63 44-109 2-65 (264)
280 cd08259 Zn_ADH5 Alcohol dehydr 60.2 24 0.00051 30.4 5.7 51 150-201 144-194 (332)
281 PRK13512 coenzyme A disulfide 60.1 11 0.00025 35.1 4.0 35 169-204 147-181 (438)
282 cd01545 PBP1_SalR Ligand-bindi 60.1 93 0.002 25.7 9.2 52 55-108 14-65 (270)
283 COG0540 PyrB Aspartate carbamo 60.0 1.4E+02 0.0031 27.4 11.1 170 12-204 10-194 (316)
284 cd01822 Lysophospholipase_L1_l 59.8 81 0.0018 24.5 9.4 93 40-144 63-169 (177)
285 PRK08125 bifunctional UDP-gluc 59.5 13 0.00028 36.7 4.4 38 168-205 313-351 (660)
286 cd01391 Periplasmic_Binding_Pr 59.3 89 0.0019 24.8 9.6 64 43-106 126-189 (269)
287 cd06309 PBP1_YtfQ_like Peripla 59.2 32 0.00069 28.9 6.3 55 51-109 10-64 (273)
288 cd08239 THR_DH_like L-threonin 58.8 18 0.00039 31.8 4.8 52 149-202 144-196 (339)
289 cd06316 PBP1_ABC_sugar_binding 58.7 72 0.0016 27.2 8.5 54 53-109 12-65 (294)
290 TIGR03385 CoA_CoA_reduc CoA-di 58.6 20 0.00043 33.0 5.3 35 169-204 136-170 (427)
291 PLN02331 phosphoribosylglycina 58.6 60 0.0013 27.7 7.8 51 42-97 26-80 (207)
292 TIGR01372 soxA sarcosine oxida 58.3 21 0.00046 37.2 5.9 50 153-204 301-351 (985)
293 cd01832 SGNH_hydrolase_like_1 58.1 91 0.002 24.6 10.7 112 13-143 47-178 (185)
294 cd01492 Aos1_SUMO Ubiquitin ac 58.1 9.7 0.00021 32.0 2.8 42 167-209 18-60 (197)
295 cd06298 PBP1_CcpA_like Ligand- 57.9 52 0.0011 27.2 7.3 52 52-106 11-62 (268)
296 TIGR01318 gltD_gamma_fam gluta 57.9 13 0.00028 35.2 4.0 37 168-205 280-317 (467)
297 PLN02514 cinnamyl-alcohol dehy 57.7 23 0.00051 31.8 5.5 52 150-202 161-212 (357)
298 cd08250 Mgc45594_like Mgc45594 57.7 29 0.00062 30.1 5.9 53 150-202 120-172 (329)
299 TIGR02356 adenyl_thiF thiazole 57.5 11 0.00024 31.6 3.2 43 166-209 17-60 (202)
300 cd00466 DHQase_II Dehydroquina 57.4 36 0.00079 27.6 5.9 57 58-124 29-87 (140)
301 PRK12769 putative oxidoreducta 57.1 12 0.00026 36.9 3.8 35 168-203 325-359 (654)
302 PRK05690 molybdopterin biosynt 57.0 12 0.00026 32.5 3.3 45 167-212 29-74 (245)
303 TIGR02955 TMAO_TorT TMAO reduc 56.9 58 0.0013 28.0 7.7 54 52-106 11-64 (295)
304 COG0604 Qor NADPH:quinone redu 56.8 20 0.00043 32.5 4.8 55 149-204 122-177 (326)
305 PRK14484 phosphotransferase ma 56.7 93 0.002 24.6 8.0 77 45-129 3-85 (124)
306 cd01391 Periplasmic_Binding_Pr 56.3 65 0.0014 25.6 7.4 52 52-106 12-65 (269)
307 cd06341 PBP1_ABC_ligand_bindin 56.2 96 0.0021 27.0 9.0 53 54-106 15-74 (341)
308 PF08501 Shikimate_dh_N: Shiki 56.2 7.1 0.00015 28.2 1.5 44 63-109 16-59 (83)
309 PRK06567 putative bifunctional 56.1 12 0.00027 39.3 3.7 35 168-203 381-415 (1028)
310 cd05286 QOR2 Quinone oxidoredu 55.9 39 0.00086 28.4 6.3 52 151-202 118-169 (320)
311 PRK05479 ketol-acid reductoiso 55.9 15 0.00033 33.7 3.9 36 167-203 14-49 (330)
312 PRK12770 putative glutamate sy 55.5 17 0.00037 32.7 4.2 39 164-203 12-50 (352)
313 PRK12809 putative oxidoreducta 55.5 13 0.00028 36.7 3.6 36 168-204 308-343 (639)
314 TIGR03452 mycothione_red mycot 55.0 17 0.00037 34.1 4.2 46 152-204 157-202 (452)
315 COG0794 GutQ Predicted sugar p 54.8 7.6 0.00017 33.4 1.7 32 169-201 39-72 (202)
316 cd06317 PBP1_ABC_sugar_binding 54.7 70 0.0015 26.5 7.6 53 51-106 11-63 (275)
317 PRK13015 3-dehydroquinate dehy 54.5 38 0.00081 27.7 5.6 57 59-125 32-90 (146)
318 cd08296 CAD_like Cinnamyl alco 54.5 27 0.00057 30.8 5.2 52 150-203 145-196 (333)
319 PRK09496 trkA potassium transp 54.3 29 0.00063 32.0 5.6 54 148-202 208-262 (453)
320 cd08288 MDR_yhdh Yhdh putative 54.3 28 0.00061 30.0 5.3 39 163-201 140-178 (324)
321 PRK09004 FMN-binding protein M 54.3 95 0.0021 24.7 7.9 108 43-198 3-117 (146)
322 PF12242 Eno-Rase_NADH_b: NAD( 54.1 34 0.00074 25.1 4.7 48 152-200 14-71 (78)
323 KOG0069|consensus 54.1 17 0.00037 33.6 3.9 41 166-208 158-198 (336)
324 cd05289 MDR_like_2 alcohol deh 53.8 32 0.0007 28.9 5.4 43 160-202 135-177 (309)
325 TIGR01292 TRX_reduct thioredox 53.7 18 0.00038 30.9 3.8 36 168-204 139-174 (300)
326 cd05276 p53_inducible_oxidored 53.7 34 0.00074 28.8 5.6 35 168-202 138-172 (323)
327 TIGR01318 gltD_gamma_fam gluta 53.6 16 0.00034 34.6 3.8 35 168-203 139-173 (467)
328 cd06302 PBP1_LsrB_Quorum_Sensi 53.4 78 0.0017 27.3 7.9 53 52-106 11-63 (298)
329 cd06294 PBP1_ycjW_transcriptio 53.2 1.1E+02 0.0024 25.2 8.6 55 51-108 15-69 (270)
330 TIGR01316 gltA glutamate synth 53.0 17 0.00036 34.2 3.8 36 167-203 130-165 (449)
331 PRK01747 mnmC bifunctional tRN 53.0 14 0.0003 36.5 3.4 33 171-204 261-293 (662)
332 cd05284 arabinose_DH_like D-ar 52.9 30 0.00066 30.2 5.3 53 149-202 146-200 (340)
333 PRK09564 coenzyme A disulfide 52.8 17 0.00037 33.5 3.8 36 168-204 147-182 (444)
334 PRK12810 gltD glutamate syntha 52.7 15 0.00033 34.7 3.5 34 168-202 141-174 (471)
335 PRK15317 alkyl hydroperoxide r 52.6 16 0.00034 35.0 3.6 37 167-204 348-384 (517)
336 COG1052 LdhA Lactate dehydroge 52.6 21 0.00046 32.6 4.3 39 165-204 141-179 (324)
337 PRK07364 2-octaprenyl-6-methox 52.6 16 0.00035 33.2 3.5 34 170-204 18-51 (415)
338 cd06295 PBP1_CelR Ligand bindi 52.4 1.1E+02 0.0023 25.6 8.4 50 52-106 22-71 (275)
339 cd03129 GAT1_Peptidase_E_like 52.3 1.4E+02 0.003 24.9 9.2 74 40-127 28-101 (210)
340 PRK05395 3-dehydroquinate dehy 52.3 48 0.001 27.1 5.8 57 58-124 31-89 (146)
341 cd08243 quinone_oxidoreductase 52.2 40 0.00088 28.6 5.8 51 150-200 123-173 (320)
342 TIGR03143 AhpF_homolog putativ 51.9 17 0.00037 35.2 3.8 36 168-204 141-176 (555)
343 PRK05976 dihydrolipoamide dehy 51.8 22 0.00047 33.5 4.4 35 169-204 179-213 (472)
344 cd06299 PBP1_LacI_like_13 Liga 51.7 1.4E+02 0.0029 24.7 10.8 53 51-106 10-62 (265)
345 TIGR01088 aroQ 3-dehydroquinat 51.4 50 0.0011 26.9 5.8 57 58-124 29-87 (141)
346 PRK07251 pyridine nucleotide-d 51.4 19 0.00041 33.4 3.9 35 169-204 156-190 (438)
347 COG0041 PurE Phosphoribosylcar 51.3 77 0.0017 26.3 6.9 60 44-105 4-63 (162)
348 cd06293 PBP1_LacI_like_11 Liga 51.2 99 0.0021 25.7 8.0 52 52-106 11-62 (269)
349 PRK15182 Vi polysaccharide bio 51.1 34 0.00073 32.3 5.5 40 164-203 308-356 (425)
350 cd08290 ETR 2-enoyl thioester 50.9 38 0.00083 29.6 5.6 53 150-202 127-179 (341)
351 PF02601 Exonuc_VII_L: Exonucl 50.7 42 0.00091 29.9 5.9 83 39-125 12-104 (319)
352 cd05280 MDR_yhdh_yhfp Yhdh and 50.7 36 0.00078 29.2 5.3 34 169-202 146-179 (325)
353 PLN02178 cinnamyl-alcohol dehy 50.5 43 0.00093 30.6 6.0 53 149-202 157-210 (375)
354 PRK12809 putative oxidoreducta 50.3 20 0.00043 35.4 4.0 37 168-205 449-486 (639)
355 TIGR02964 xanthine_xdhC xanthi 50.2 19 0.00042 31.4 3.5 34 171-205 101-134 (246)
356 cd06270 PBP1_GalS_like Ligand 50.2 86 0.0019 26.0 7.5 54 51-107 10-63 (268)
357 PRK06416 dihydrolipoamide dehy 50.0 25 0.00055 32.8 4.5 35 169-204 171-205 (462)
358 cd06353 PBP1_BmpA_Med_like Per 49.9 82 0.0018 27.2 7.4 61 43-106 1-64 (258)
359 cd06366 PBP1_GABAb_receptor Li 49.9 1.8E+02 0.0039 25.5 10.7 44 154-201 123-170 (350)
360 KOG1504|consensus 49.8 17 0.00037 32.9 3.1 77 124-200 143-220 (346)
361 PRK12814 putative NADPH-depend 49.8 18 0.00038 36.0 3.6 34 169-203 192-225 (652)
362 PRK09853 putative selenate red 49.5 29 0.00062 36.7 5.2 47 158-205 652-704 (1019)
363 PRK08644 thiamine biosynthesis 49.3 13 0.00029 31.6 2.3 42 166-208 24-66 (212)
364 cd01539 PBP1_GGBP Periplasmic 49.3 78 0.0017 27.4 7.3 55 53-109 12-66 (303)
365 PRK12775 putative trifunctiona 49.1 20 0.00043 37.7 3.9 37 168-205 569-606 (1006)
366 PRK08328 hypothetical protein; 49.1 21 0.00046 30.7 3.6 46 167-213 24-70 (231)
367 TIGR02824 quinone_pig3 putativ 49.0 45 0.00098 28.2 5.6 35 168-202 138-172 (325)
368 PRK06292 dihydrolipoamide dehy 49.0 22 0.00049 33.0 4.0 36 168-204 167-202 (460)
369 PRK09701 D-allose transporter 49.0 1E+02 0.0022 26.9 8.0 63 43-106 26-89 (311)
370 cd06284 PBP1_LacI_like_6 Ligan 48.6 1.1E+02 0.0024 25.1 7.8 55 51-108 10-64 (267)
371 cd01542 PBP1_TreR_like Ligand- 48.5 64 0.0014 26.6 6.3 54 52-108 11-64 (259)
372 cd06280 PBP1_LacI_like_4 Ligan 48.5 1.5E+02 0.0032 24.6 8.6 54 52-109 11-64 (263)
373 COG1086 Predicted nucleoside-d 48.3 3E+02 0.0064 27.6 12.2 117 62-205 169-285 (588)
374 TIGR03140 AhpF alkyl hydropero 48.3 21 0.00044 34.2 3.7 35 168-203 350-384 (515)
375 cd01968 Nitrogenase_NifE_I Nit 48.3 36 0.00078 31.6 5.2 48 158-206 275-322 (410)
376 KOG1429|consensus 48.3 28 0.00061 32.0 4.3 44 161-204 18-61 (350)
377 PF04273 DUF442: Putative phos 48.2 89 0.0019 24.0 6.6 42 57-98 44-86 (110)
378 cd06297 PBP1_LacI_like_12 Liga 48.2 90 0.0019 26.2 7.3 52 52-106 11-62 (269)
379 PRK08057 cobalt-precorrin-6x r 48.2 57 0.0012 28.6 6.2 36 58-93 203-245 (248)
380 PF10881 DUF2726: Protein of u 48.1 1.2E+02 0.0026 23.1 7.7 55 39-93 67-124 (126)
381 cd01574 PBP1_LacI Ligand-bindi 47.9 1E+02 0.0022 25.4 7.5 57 51-109 10-66 (264)
382 cd01538 PBP1_ABC_xylose_bindin 47.9 1.1E+02 0.0023 26.1 7.8 60 45-107 3-63 (288)
383 PF01262 AlaDh_PNT_C: Alanine 47.9 22 0.00049 28.7 3.4 36 168-204 18-53 (168)
384 KOG3474|consensus 47.8 18 0.00039 26.4 2.4 29 63-91 10-38 (84)
385 cd06314 PBP1_tmGBP Periplasmic 47.8 94 0.002 26.0 7.4 53 52-106 10-62 (271)
386 TIGR02823 oxido_YhdH putative 47.7 35 0.00076 29.5 4.8 48 153-201 129-177 (323)
387 cd06275 PBP1_PurR Ligand-bindi 47.7 75 0.0016 26.3 6.7 52 53-107 12-63 (269)
388 KOG1494|consensus 47.6 19 0.00042 32.9 3.1 28 165-192 23-50 (345)
389 PRK05600 thiamine biosynthesis 47.6 17 0.00036 33.8 2.8 47 166-213 37-84 (370)
390 PF01118 Semialdhyde_dh: Semia 47.6 22 0.00048 27.1 3.1 34 172-205 1-35 (121)
391 PRK06115 dihydrolipoamide dehy 47.6 24 0.00052 33.2 4.0 35 169-204 173-207 (466)
392 COG0521 MoaB Molybdopterin bio 47.5 1.3E+02 0.0029 25.1 7.9 89 42-134 8-101 (169)
393 PRK11267 biopolymer transport 47.3 48 0.001 26.3 5.1 55 13-74 76-130 (141)
394 COG0272 Lig NAD-dependent DNA 47.3 36 0.00078 34.3 5.2 67 10-91 599-666 (667)
395 cd06321 PBP1_ABC_sugar_binding 47.2 96 0.0021 25.8 7.3 56 52-109 11-66 (271)
396 PRK12831 putative oxidoreducta 47.2 24 0.00052 33.4 3.9 35 168-203 138-172 (464)
397 PRK06370 mercuric reductase; V 47.1 30 0.00064 32.4 4.5 35 169-204 170-204 (463)
398 PLN02712 arogenate dehydrogena 46.9 25 0.00055 35.2 4.2 38 165-203 364-401 (667)
399 TIGR02667 moaB_proteo molybden 46.8 1.6E+02 0.0034 24.0 8.3 89 40-133 3-96 (163)
400 cd06578 HemD Uroporphyrinogen- 46.7 43 0.00093 27.5 5.0 131 62-204 13-155 (239)
401 cd08273 MDR8 Medium chain dehy 46.6 50 0.0011 28.5 5.6 52 150-201 120-171 (331)
402 TIGR01421 gluta_reduc_1 glutat 46.5 26 0.00057 32.8 4.1 35 169-204 165-199 (450)
403 PRK09853 putative selenate red 46.4 22 0.00048 37.5 3.8 35 168-203 537-571 (1019)
404 PRK13984 putative oxidoreducta 46.0 24 0.00052 34.4 3.8 35 168-203 281-315 (604)
405 PRK06063 DNA polymerase III su 46.0 51 0.0011 29.8 5.7 71 10-94 237-308 (313)
406 cd06324 PBP1_ABC_sugar_binding 46.0 99 0.0021 26.7 7.4 55 52-109 12-67 (305)
407 cd01540 PBP1_arabinose_binding 45.9 88 0.0019 26.3 6.9 51 53-107 12-62 (289)
408 PRK05249 soluble pyridine nucl 45.8 26 0.00056 32.7 3.8 35 169-204 174-208 (461)
409 TIGR00715 precor6x_red precorr 45.7 50 0.0011 29.1 5.5 42 52-93 205-253 (256)
410 PRK06327 dihydrolipoamide dehy 45.5 31 0.00068 32.5 4.4 36 168-204 181-216 (475)
411 cd08248 RTN4I1 Human Reticulon 45.5 53 0.0012 28.7 5.7 34 169-202 162-195 (350)
412 PF02585 PIG-L: GlcNAc-PI de-N 45.4 1.3E+02 0.0028 22.6 7.6 80 39-120 25-120 (128)
413 cd06283 PBP1_RegR_EndR_KdgR_li 45.3 1.5E+02 0.0034 24.2 8.2 55 51-108 10-64 (267)
414 PF03807 F420_oxidored: NADP o 45.3 20 0.00044 25.6 2.5 34 172-206 1-37 (96)
415 PLN02529 lysine-specific histo 45.2 24 0.00052 35.9 3.7 54 148-203 124-192 (738)
416 PRK12810 gltD glutamate syntha 45.1 28 0.0006 32.9 4.0 35 167-202 278-313 (471)
417 cd06323 PBP1_ribose_binding Pe 45.1 92 0.002 25.6 6.8 53 51-106 10-62 (268)
418 TIGR01317 GOGAT_sm_gam glutama 45.1 33 0.00071 32.7 4.5 37 168-205 281-318 (485)
419 PTZ00058 glutathione reductase 45.1 24 0.00052 34.6 3.6 34 170-204 237-270 (561)
420 cd04501 SGNH_hydrolase_like_4 45.0 1.5E+02 0.0033 23.3 10.0 98 40-144 58-176 (183)
421 PF00582 Usp: Universal stress 44.8 66 0.0014 23.1 5.3 46 150-200 87-139 (140)
422 cd08274 MDR9 Medium chain dehy 44.7 57 0.0012 28.5 5.7 52 150-202 159-210 (350)
423 PRK09426 methylmalonyl-CoA mut 44.4 1.4E+02 0.0031 30.4 9.0 70 22-95 564-633 (714)
424 PRK10528 multifunctional acyl- 44.1 1.7E+02 0.0038 23.7 11.0 93 40-144 70-176 (191)
425 PF13380 CoA_binding_2: CoA bi 44.0 32 0.0007 26.3 3.6 36 171-206 1-39 (116)
426 PRK14989 nitrite reductase sub 44.0 42 0.00091 34.6 5.3 49 153-205 131-179 (847)
427 PRK06116 glutathione reductase 43.7 36 0.00078 31.7 4.5 35 169-204 166-200 (450)
428 cd04502 SGNH_hydrolase_like_7 43.7 1.6E+02 0.0034 23.1 9.1 96 40-143 49-163 (171)
429 cd07014 S49_SppA Signal peptid 43.6 32 0.0007 28.0 3.7 32 77-108 17-48 (177)
430 COG1103 Archaea-specific pyrid 43.5 1E+02 0.0022 28.4 7.0 136 50-191 106-269 (382)
431 COG0655 WrbA Multimeric flavod 43.5 1.7E+02 0.0038 24.3 8.3 36 46-81 5-42 (207)
432 COG5322 Predicted dehydrogenas 43.4 44 0.00096 30.5 4.7 104 99-203 70-200 (351)
433 PF13458 Peripla_BP_6: Peripla 43.2 87 0.0019 27.1 6.6 122 70-198 40-167 (343)
434 cd06281 PBP1_LacI_like_5 Ligan 43.2 1.5E+02 0.0032 24.7 7.8 53 52-107 11-63 (269)
435 PRK12779 putative bifunctional 43.1 24 0.00053 36.8 3.5 35 168-203 304-338 (944)
436 PLN02507 glutathione reductase 42.9 26 0.00057 33.5 3.5 35 169-204 202-236 (499)
437 TIGR02374 nitri_red_nirB nitri 42.8 54 0.0012 33.4 5.9 48 153-204 126-173 (785)
438 cd06290 PBP1_LacI_like_9 Ligan 42.8 1.1E+02 0.0025 25.2 7.1 52 52-106 11-62 (265)
439 cd06304 PBP1_BmpA_like Peripla 42.8 1.3E+02 0.0029 25.1 7.6 44 59-106 20-63 (260)
440 cd06332 PBP1_aromatic_compound 42.7 2.2E+02 0.0047 24.4 11.0 49 57-105 18-71 (333)
441 cd06288 PBP1_sucrose_transcrip 42.7 1.9E+02 0.0041 23.8 8.4 53 52-107 12-64 (269)
442 TIGR03315 Se_ygfK putative sel 42.7 41 0.00089 35.6 5.0 47 158-205 650-702 (1012)
443 KOG3035|consensus 42.6 1.1E+02 0.0023 27.1 6.8 53 20-76 96-171 (245)
444 PRK09424 pntA NAD(P) transhydr 42.5 55 0.0012 31.9 5.6 49 155-204 140-198 (509)
445 KOG0023|consensus 42.4 66 0.0014 30.0 5.8 59 152-212 165-223 (360)
446 cd08291 ETR_like_1 2-enoyl thi 42.3 56 0.0012 28.5 5.3 48 151-200 126-174 (324)
447 PRK07818 dihydrolipoamide dehy 42.2 29 0.00062 32.6 3.6 35 169-204 171-205 (466)
448 TIGR00289 conserved hypothetic 42.1 1E+02 0.0022 26.7 6.7 80 40-124 24-130 (222)
449 PRK08762 molybdopterin biosynt 42.0 26 0.00056 32.3 3.2 42 167-209 132-174 (376)
450 cd00229 SGNH_hydrolase SGNH_hy 42.0 1.4E+02 0.003 22.0 8.3 97 39-143 63-180 (187)
451 PF08937 DUF1863: MTH538 TIR-l 42.0 69 0.0015 24.7 5.2 54 21-83 59-112 (130)
452 PRK12778 putative bifunctional 41.5 34 0.00074 34.4 4.2 35 168-203 429-463 (752)
453 cd06339 PBP1_YraM_LppC_lipopro 41.4 2.5E+02 0.0054 24.8 10.1 138 58-204 19-162 (336)
454 cd07018 S49_SppA_67K_type Sign 41.3 33 0.00073 29.1 3.6 31 79-109 26-56 (222)
455 PRK07846 mycothione reductase; 41.3 46 0.001 31.3 4.8 36 169-205 165-200 (451)
456 cd06308 PBP1_sensor_kinase_lik 41.3 1.8E+02 0.0039 24.2 8.1 54 52-108 11-65 (270)
457 cd08268 MDR2 Medium chain dehy 41.2 62 0.0013 27.4 5.3 34 168-201 143-176 (328)
458 TIGR02355 moeB molybdopterin s 41.2 26 0.00056 30.4 2.9 43 167-210 21-64 (240)
459 COG2160 AraA L-arabinose isome 41.1 56 0.0012 31.3 5.2 79 66-145 39-130 (497)
460 cd08264 Zn_ADH_like2 Alcohol d 40.9 71 0.0015 27.6 5.7 51 150-201 144-194 (325)
461 TIGR01317 GOGAT_sm_gam glutama 40.9 31 0.00067 32.9 3.6 34 169-203 142-175 (485)
462 PF14259 RRM_6: RNA recognitio 40.9 13 0.00029 24.8 0.9 60 112-173 7-69 (70)
463 cd08267 MDR1 Medium chain dehy 40.9 67 0.0015 27.2 5.4 45 158-202 132-176 (319)
464 PF11272 DUF3072: Protein of u 40.8 80 0.0017 21.8 4.6 41 50-95 12-52 (57)
465 cd08244 MDR_enoyl_red Possible 40.7 81 0.0018 27.0 6.0 34 169-202 142-175 (324)
466 PRK09739 hypothetical protein; 40.6 1.6E+02 0.0034 24.3 7.5 64 43-109 5-89 (199)
467 PRK08010 pyridine nucleotide-d 40.6 40 0.00086 31.3 4.2 36 168-204 156-191 (441)
468 cd01994 Alpha_ANH_like_IV This 40.4 1.5E+02 0.0033 24.7 7.4 63 39-102 23-91 (194)
469 COG1587 HemD Uroporphyrinogen- 40.4 1.5E+02 0.0032 25.4 7.5 117 60-200 87-228 (248)
470 cd08277 liver_alcohol_DH_like 40.3 64 0.0014 28.9 5.4 34 168-202 183-217 (365)
471 PF02254 TrkA_N: TrkA-N domain 40.3 26 0.00057 25.8 2.5 31 173-204 1-31 (116)
472 PF02571 CbiJ: Precorrin-6x re 40.3 74 0.0016 27.9 5.6 24 58-81 207-230 (249)
473 cd08260 Zn_ADH6 Alcohol dehydr 40.3 74 0.0016 27.9 5.8 33 168-201 164-196 (345)
474 cd06375 PBP1_mGluR_groupII Lig 40.2 1.5E+02 0.0032 27.9 8.1 65 43-108 176-241 (458)
475 cd01829 SGNH_hydrolase_peri2 S 39.9 1.5E+02 0.0032 23.7 7.1 62 40-101 58-145 (200)
476 PF01963 TraB: TraB family; I 39.8 51 0.0011 27.9 4.5 30 170-199 228-258 (259)
477 cd00578 L-fuc_L-ara-isomerases 39.7 84 0.0018 29.6 6.3 104 17-136 140-261 (452)
478 cd06315 PBP1_ABC_sugar_binding 39.7 1.7E+02 0.0036 24.8 7.7 52 52-106 12-63 (280)
479 cd01452 VWA_26S_proteasome_sub 39.7 2.3E+02 0.005 23.8 11.5 63 42-105 108-172 (187)
480 TIGR00561 pntA NAD(P) transhyd 39.4 49 0.0011 32.3 4.8 50 155-205 139-198 (511)
481 PF03618 Kinase-PPPase: Kinase 39.4 98 0.0021 27.5 6.3 121 69-198 24-165 (255)
482 cd08252 AL_MDR Arginate lyase 39.4 88 0.0019 27.1 6.0 34 170-203 150-184 (336)
483 PRK15116 sulfur acceptor prote 39.3 27 0.00059 31.1 2.8 42 167-209 27-69 (268)
484 cd08281 liver_ADH_like1 Zinc-d 39.3 58 0.0013 29.3 5.0 32 169-201 191-223 (371)
485 TIGR03679 arCOG00187 arCOG0018 39.2 1E+02 0.0022 26.3 6.2 66 39-105 21-92 (218)
486 PRK09590 celB cellobiose phosp 39.1 1.6E+02 0.0035 22.3 6.7 35 46-80 5-39 (104)
487 PRK07877 hypothetical protein; 39.1 23 0.0005 36.0 2.5 40 167-208 104-145 (722)
488 TIGR02803 ExbD_1 TonB system t 38.9 73 0.0016 24.4 4.9 55 12-73 61-115 (122)
489 PRK12775 putative trifunctiona 38.7 34 0.00073 36.0 3.8 34 169-203 429-462 (1006)
490 TIGR00478 tly hemolysin TlyA f 38.7 92 0.002 27.0 5.9 61 149-212 55-116 (228)
491 cd08240 6_hydroxyhexanoate_dh_ 38.6 69 0.0015 28.2 5.3 42 160-202 166-208 (350)
492 PTZ00153 lipoamide dehydrogena 38.5 33 0.0007 34.4 3.5 35 169-204 311-345 (659)
493 cd07019 S49_SppA_1 Signal pept 38.4 38 0.00082 28.5 3.4 35 81-118 20-54 (211)
494 TIGR00106 uncharacterized prot 38.3 96 0.0021 23.3 5.3 54 44-97 5-61 (97)
495 PRK15408 autoinducer 2-binding 38.3 1.3E+02 0.0029 27.0 7.2 65 42-109 24-89 (336)
496 PRK13265 glycine/sarcosine/bet 38.3 49 0.0011 27.0 3.8 32 167-198 3-35 (154)
497 PF03358 FMN_red: NADPH-depend 38.2 1.4E+02 0.003 23.0 6.5 38 44-81 3-42 (152)
498 PLN02968 Probable N-acetyl-gam 38.2 38 0.00082 31.6 3.7 35 169-203 37-72 (381)
499 cd06274 PBP1_FruR Ligand bindi 38.0 1.9E+02 0.0041 23.9 7.7 52 52-106 11-62 (264)
500 cd08245 CAD Cinnamyl alcohol d 37.9 77 0.0017 27.5 5.4 51 150-202 144-194 (330)
No 1
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=100.00 E-value=4.1e-73 Score=502.94 Aligned_cols=203 Identities=39% Similarity=0.683 Sum_probs=196.6
Q ss_pred hhhhcccHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcchHHHHHHHHHHHHHcCcceEEEeCCCCCCHHHHH
Q psy7981 9 QAQILSGTAVSGDIREGLKERVKKLKERLPDFEPGLAIVQVGGREDSNVYIRMKMKAAKEIGIDAQHVKLPRSITEIELL 88 (216)
Q Consensus 9 ~a~il~Gk~vA~~i~~~ik~~v~~l~~~~~~~~P~LaiI~vg~~~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~ 88 (216)
|+++||||++|++|++++++++++|+++ .|++|+|++|++|+||+|..|+++|+|+|+++||++++++||++++|+|++
T Consensus 1 ~~~il~Gk~iA~~i~~~lk~~v~~l~~~-~g~~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~~l~ 79 (288)
T PRK14171 1 MNNIIDGKALANEILADLKLEIQELKSQ-TNASPKLAIVLVGDNPASIIYVKNKIKNAHKIGIDTLLVNLSTTIHTNDLI 79 (288)
T ss_pred CCeEeeHHHHHHHHHHHHHHHHHHHHhc-cCCCCeEEEEEeCCCccHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHH
Confidence 4689999999999999999999999854 378999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCccEEEEeCCCCCCCCCCHHHHhhhcCCCCCcccCCccchhHhhcCCCCCcccCCHHHHHHHHHHhCCCC
Q psy7981 89 SRLKKLNEDPSVHGIIVQMPLDSDNDINAMLVTDSVSPEKDVDGLNTINEGRVAIGDMNGFIPCTPNGVLELIKRTNVTI 168 (216)
Q Consensus 89 ~~I~~lN~D~~V~GIlvqlPL~~P~~id~~~i~~~I~p~KDVDG~~~~n~G~l~~~~~~~~~PcTa~av~~lL~~~~i~l 168 (216)
+.|++||+|++|||||||+|| |+|+|++.++++|+|+||||||||.|+|+|+.|+..+|+||||+||++||++|++++
T Consensus 80 ~~I~~LN~D~~V~GIlvqlPL--P~~id~~~i~~~I~p~KDVDGl~~~N~g~l~~g~~~~~~PcTp~av~~lL~~y~i~l 157 (288)
T PRK14171 80 SKINELNLDNEISGIIVQLPL--PSSIDKNKILSAVSPSKDIDGFHPLNVGYLHSGISQGFIPCTALGCLAVIKKYEPNL 157 (288)
T ss_pred HHHHHHcCCCCCCEEEEeCCC--CCCCCHHHHHhccCcccccccCCccchhhhhcCCCCCCcCCCHHHHHHHHHHhCCCC
Confidence 999999999999999999999 999999999999999999999999999999999524899999999999999999999
Q ss_pred CCCeEEEecCCCcccHHHHHHhhhCCCEEEEecCCCCChHHHHhcC
Q psy7981 169 AGTNAVVLGRSKIVGTPAAELLKWKHATVTVCHSKTKNIQDVVKSP 214 (216)
Q Consensus 169 ~Gk~vvViGrS~~VG~Pla~lL~~~~ATVtichs~T~~l~~~~k~a 214 (216)
+||+|||||||++||+|+++||+++|||||+|||+|+||++++++|
T Consensus 158 ~GK~vvViGrS~iVGkPla~lL~~~~ATVtichs~T~~L~~~~~~A 203 (288)
T PRK14171 158 TGKNVVIIGRSNIVGKPLSALLLKENCSVTICHSKTHNLSSITSKA 203 (288)
T ss_pred CCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCCCCHHHHHhhC
Confidence 9999999999999999999999999999999999999999999997
No 2
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=100.00 E-value=3.4e-73 Score=502.68 Aligned_cols=201 Identities=43% Similarity=0.747 Sum_probs=196.3
Q ss_pred hhhhcccHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcchHHHHHHHHHHHHHcCcceEEEeCCCCCCHHHHH
Q psy7981 9 QAQILSGTAVSGDIREGLKERVKKLKERLPDFEPGLAIVQVGGREDSNVYIRMKMKAAKEIGIDAQHVKLPRSITEIELL 88 (216)
Q Consensus 9 ~a~il~Gk~vA~~i~~~ik~~v~~l~~~~~~~~P~LaiI~vg~~~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~ 88 (216)
|+++||||++|++++++++++++.|+++ |++|+|++|++|+|++|..|+++|+|+|+++||+++.++||++++|+|++
T Consensus 1 ~~~il~Gk~iA~~i~~~ik~~i~~l~~~--g~~P~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~ 78 (284)
T PRK14170 1 MGEIIDGKKLAKEIQEKVTREVAELVKE--GKKPGLAVVLVGDNQASRTYVRNKQKRTEEAGMKSVLIELPENVTEEKLL 78 (284)
T ss_pred CCeEEEhHHHHHHHHHHHHHHHHHHHhC--CCCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHH
Confidence 5789999999999999999999999864 79999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCccEEEEeCCCCCCCCCCHHHHhhhcCCCCCcccCCccchhHhhcCCCCCcccCCHHHHHHHHHHhCCCC
Q psy7981 89 SRLKKLNEDPSVHGIIVQMPLDSDNDINAMLVTDSVSPEKDVDGLNTINEGRVAIGDMNGFIPCTPNGVLELIKRTNVTI 168 (216)
Q Consensus 89 ~~I~~lN~D~~V~GIlvqlPL~~P~~id~~~i~~~I~p~KDVDG~~~~n~G~l~~~~~~~~~PcTa~av~~lL~~~~i~l 168 (216)
+.|++||+|++|||||||+|| |+|+|+++++++|+|+||||||||+|+|+|+.|. .+|+||||+||++||++|++++
T Consensus 79 ~~I~~lN~D~~V~GIivqlPl--P~~i~~~~i~~~I~p~KDVDGl~p~N~g~l~~~~-~~~~PcTp~avi~lL~~~~i~l 155 (284)
T PRK14170 79 SVVEELNEDKTIHGILVQLPL--PEHISEEKVIDTISYDKDVDGFHPVNVGNLFIGK-DSFVPCTPAGIIELIKSTGTQI 155 (284)
T ss_pred HHHHHHhCCCCCCeEEEecCC--CCCCCHHHHHhccCcccCcccCChhhhhHHhCCC-CCCCCCCHHHHHHHHHHhCCCC
Confidence 999999999999999999999 9999999999999999999999999999999994 4899999999999999999999
Q ss_pred CCCeEEEecCCCcccHHHHHHhhhCCCEEEEecCCCCChHHHHhcC
Q psy7981 169 AGTNAVVLGRSKIVGTPAAELLKWKHATVTVCHSKTKNIQDVVKSP 214 (216)
Q Consensus 169 ~Gk~vvViGrS~~VG~Pla~lL~~~~ATVtichs~T~~l~~~~k~a 214 (216)
+||+|||||||++||+|+++||+++|||||+|||+|+||++++++|
T Consensus 156 ~Gk~vvVvGrS~iVGkPla~lL~~~~atVtichs~T~~l~~~~~~A 201 (284)
T PRK14170 156 EGKRAVVIGRSNIVGKPVAQLLLNENATVTIAHSRTKDLPQVAKEA 201 (284)
T ss_pred CCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCCCCHHHHHhhC
Confidence 9999999999999999999999999999999999999999999997
No 3
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=100.00 E-value=8e-73 Score=503.36 Aligned_cols=210 Identities=45% Similarity=0.740 Sum_probs=200.2
Q ss_pred CcchhhhhhhhhcccHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcchHHHHHHHHHHHHHcCcceEEEeCCC
Q psy7981 1 MAESAVQQQAQILSGTAVSGDIREGLKERVKKLKERLPDFEPGLAIVQVGGREDSNVYIRMKMKAAKEIGIDAQHVKLPR 80 (216)
Q Consensus 1 ~~~~~~~~~a~il~Gk~vA~~i~~~ik~~v~~l~~~~~~~~P~LaiI~vg~~~as~~Yv~~k~k~a~~~Gi~~~~~~l~~ 80 (216)
||+-..+| +++|||+++|++|+++++++++.|+++ .|++|+|++|++|+||+|..|+++|+|+|+++||+++.++||+
T Consensus 1 ~~~~~~~~-~~ildGk~vA~~i~~~l~~~v~~l~~~-~g~~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~ 78 (299)
T PLN02516 1 MASPSDHV-AQIIDGKAIAKAIRSEIAEEVAQLSEK-HGKVPGLAVVIVGSRKDSQTYVNMKRKACAEVGIKSFDVDLPE 78 (299)
T ss_pred CCCCcccc-CeEeehHHHHHHHHHHHHHHHHHHHHc-CCCCCeEEEEEECCChhHHHHHHHHHHHHHHcCCEEEEEECCC
Confidence 56666664 578999999999999999999999854 4789999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHhcCCCCccEEEEeCCCCCCCCCCHHHHhhhcCCCCCcccCCccchhHhhcCCC-CCcccCCHHHHHH
Q psy7981 81 SITEIELLSRLKKLNEDPSVHGIIVQMPLDSDNDINAMLVTDSVSPEKDVDGLNTINEGRVAIGDM-NGFIPCTPNGVLE 159 (216)
Q Consensus 81 ~~~~~el~~~I~~lN~D~~V~GIlvqlPL~~P~~id~~~i~~~I~p~KDVDG~~~~n~G~l~~~~~-~~~~PcTa~av~~ 159 (216)
++|++|+++.|++||+|++|||||||+|| |+|+|+++++++|+|+||||||||.|+|+|+.|.. .+|+||||+||++
T Consensus 79 ~~s~~el~~~I~~lN~D~~V~GIlvq~Pl--P~~id~~~i~~~I~p~KDVDGl~~~n~g~l~~~~~~~~~~PcTp~avi~ 156 (299)
T PLN02516 79 NISEAELISKVHELNANPDVHGILVQLPL--PKHINEEKILNEISLEKDVDGFHPLNIGKLAMKGREPLFLPCTPKGCLE 156 (299)
T ss_pred CCCHHHHHHHHHHHhCCCCCCeEEEecCC--CCCcCHHHHHhccCcccccCccCHhhHhhHhcCCCCCCCCCCCHHHHHH
Confidence 99999999999999999999999999999 99999999999999999999999999999998632 4899999999999
Q ss_pred HHHHhCCCCCCCeEEEecCCCcccHHHHHHhhhCCCEEEEecCCCCChHHHHhcC
Q psy7981 160 LIKRTNVTIAGTNAVVLGRSKIVGTPAAELLKWKHATVTVCHSKTKNIQDVVKSP 214 (216)
Q Consensus 160 lL~~~~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~ATVtichs~T~~l~~~~k~a 214 (216)
||++|+++++||+|||||||++||+|+++||+++|||||+|||+|+|+++++|+|
T Consensus 157 lL~~~~i~l~Gk~vvVIGRS~iVGkPla~lL~~~~ATVtvchs~T~nl~~~~~~A 211 (299)
T PLN02516 157 LLSRSGIPIKGKKAVVVGRSNIVGLPVSLLLLKADATVTVVHSRTPDPESIVREA 211 (299)
T ss_pred HHHHhCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCCCCCHHHHHhhC
Confidence 9999999999999999999999999999999999999999999999999999987
No 4
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=100.00 E-value=1.3e-72 Score=500.93 Aligned_cols=203 Identities=39% Similarity=0.691 Sum_probs=196.7
Q ss_pred hhhhcccHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcchHHHHHHHHHHHHHcCcceEEEeCCCCCCHHHHH
Q psy7981 9 QAQILSGTAVSGDIREGLKERVKKLKERLPDFEPGLAIVQVGGREDSNVYIRMKMKAAKEIGIDAQHVKLPRSITEIELL 88 (216)
Q Consensus 9 ~a~il~Gk~vA~~i~~~ik~~v~~l~~~~~~~~P~LaiI~vg~~~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~ 88 (216)
|+++||||++|++|+++++++++.|+++ .|++|+|++|++|+||+|..|+++|.|+|+++||+++.++||++++|+|++
T Consensus 1 ~~~ildGk~va~~i~~~lk~~v~~l~~~-~g~~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~e~~l~ 79 (294)
T PRK14187 1 ETNIIDGKKIANDITEILATCIDDLKRQ-HNLFPCLIVILVGDDPASQLYVRNKQRKAEMLGLRSETILLPSTISESSLI 79 (294)
T ss_pred CcEEeehHHHHHHHHHHHHHHHHHHHHc-cCCCCeEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHH
Confidence 4678999999999999999999999854 378999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCccEEEEeCCCCCCCCCCHHHHhhhcCCCCCcccCCccchhHhhcCCC-CCcccCCHHHHHHHHHHhCCC
Q psy7981 89 SRLKKLNEDPSVHGIIVQMPLDSDNDINAMLVTDSVSPEKDVDGLNTINEGRVAIGDM-NGFIPCTPNGVLELIKRTNVT 167 (216)
Q Consensus 89 ~~I~~lN~D~~V~GIlvqlPL~~P~~id~~~i~~~I~p~KDVDG~~~~n~G~l~~~~~-~~~~PcTa~av~~lL~~~~i~ 167 (216)
+.|++||+|++|||||||+|| |+|+|++.++++|+|+||||||||.|+|+|+.|+. .+|+||||+||++||++|+++
T Consensus 80 ~~I~~lN~d~~V~GIlvqlPL--P~~i~~~~i~~~I~p~KDVDGl~~~n~g~l~~g~~~~~~~PcTp~avi~lL~~~~i~ 157 (294)
T PRK14187 80 EKINELNNDDSVHGILVQLPV--PNHIDKNLIINTIDPEKDVDGFHNENVGRLFTGQKKNCLIPCTPKGCLYLIKTITRN 157 (294)
T ss_pred HHHHHHhCCCCCCEEEEeCCC--CCCCCHHHHHhccCcccCcccCChhhHHHHhCCCCCCCccCcCHHHHHHHHHHhCCC
Confidence 999999999999999999999 99999999999999999999999999999999964 389999999999999999999
Q ss_pred CCCCeEEEecCCCcccHHHHHHhhhCCCEEEEecCCCCChHHHHhcC
Q psy7981 168 IAGTNAVVLGRSKIVGTPAAELLKWKHATVTVCHSKTKNIQDVVKSP 214 (216)
Q Consensus 168 l~Gk~vvViGrS~~VG~Pla~lL~~~~ATVtichs~T~~l~~~~k~a 214 (216)
++||+|||||||++||+|+++||+++|||||+|||+|+||++++++|
T Consensus 158 l~Gk~vvViGrS~iVGkPla~lL~~~~aTVt~chs~T~~l~~~~~~A 204 (294)
T PRK14187 158 LSGSDAVVIGRSNIVGKPMACLLLGENCTVTTVHSATRDLADYCSKA 204 (294)
T ss_pred CCCCEEEEECCCccchHHHHHHHhhCCCEEEEeCCCCCCHHHHHhhC
Confidence 99999999999999999999999999999999999999999999998
No 5
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=100.00 E-value=1.2e-72 Score=510.95 Aligned_cols=204 Identities=45% Similarity=0.745 Sum_probs=196.9
Q ss_pred hhhhhcccHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcchHHHHHHHHHHHHHcCcceEEEeCCCCCCHHHH
Q psy7981 8 QQAQILSGTAVSGDIREGLKERVKKLKERLPDFEPGLAIVQVGGREDSNVYIRMKMKAAKEIGIDAQHVKLPRSITEIEL 87 (216)
Q Consensus 8 ~~a~il~Gk~vA~~i~~~ik~~v~~l~~~~~~~~P~LaiI~vg~~~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el 87 (216)
|++++|||+++|++|+++++++++.|+++ .|++|+|++|+||+||+|..|+++|+|+|+++||+++.++||++++|+|+
T Consensus 71 ~~~~ildGk~iA~~i~~~lk~~v~~lk~~-~g~~P~LaiIlvG~dpaS~~Yv~~k~K~~e~~GI~~~~~~lpe~~te~el 149 (364)
T PLN02616 71 GGAKVIDGKAVAKKIRDEITIEVSRMKES-IGVVPGLAVILVGDRKDSATYVRNKKKACDSVGINSFEVRLPEDSTEQEV 149 (364)
T ss_pred ccCeEeEhHHHHHHHHHHHHHHHHHHHHc-CCCCCeEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHH
Confidence 45779999999999999999999999864 47899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCccEEEEeCCCCCCCCCCHHHHhhhcCCCCCcccCCccchhHhhcCC-CCCcccCCHHHHHHHHHHhCC
Q psy7981 88 LSRLKKLNEDPSVHGIIVQMPLDSDNDINAMLVTDSVSPEKDVDGLNTINEGRVAIGD-MNGFIPCTPNGVLELIKRTNV 166 (216)
Q Consensus 88 ~~~I~~lN~D~~V~GIlvqlPL~~P~~id~~~i~~~I~p~KDVDG~~~~n~G~l~~~~-~~~~~PcTa~av~~lL~~~~i 166 (216)
++.|++||+|++|||||||+|| |+|+|+++++++|+|+||||||||+|+|+|+.|. ...|+||||+||++||++|++
T Consensus 150 l~~I~~LN~D~~V~GIlVQlPL--P~~id~~~i~~aI~P~KDVDGl~p~N~G~L~~g~~~~~f~PCTp~avielL~~y~i 227 (364)
T PLN02616 150 LKFISGFNNDPSVHGILVQLPL--PSHMDEQNILNAVSIEKDVDGFHPLNIGRLAMRGREPLFVPCTPKGCIELLHRYNV 227 (364)
T ss_pred HHHHHHHcCCCCCCEEEEeCCC--CCCCCHHHHHhccCcccCcccCChhhhHHHhcCCCCCCCCCCCHHHHHHHHHHhCC
Confidence 9999999999999999999999 9999999999999999999999999999999863 248999999999999999999
Q ss_pred CCCCCeEEEecCCCcccHHHHHHhhhCCCEEEEecCCCCChHHHHhcC
Q psy7981 167 TIAGTNAVVLGRSKIVGTPAAELLKWKHATVTVCHSKTKNIQDVVKSP 214 (216)
Q Consensus 167 ~l~Gk~vvViGrS~~VG~Pla~lL~~~~ATVtichs~T~~l~~~~k~a 214 (216)
+++||+|||||||++||+|+++||+++|||||+|||+|+||++++|+|
T Consensus 228 ~l~GK~vvVIGRS~iVGkPLa~LL~~~~ATVTicHs~T~nl~~~~r~A 275 (364)
T PLN02616 228 EIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTKNPEEITREA 275 (364)
T ss_pred CCCCCEEEEECCCccccHHHHHHHHHCCCeEEEeCCCCCCHHHHHhhC
Confidence 999999999999999999999999999999999999999999999998
No 6
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=100.00 E-value=1.4e-72 Score=495.85 Aligned_cols=200 Identities=47% Similarity=0.805 Sum_probs=195.2
Q ss_pred hhcccHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcchHHHHHHHHHHHHHcCcceEEEeCCCCCCHHHHHHH
Q psy7981 11 QILSGTAVSGDIREGLKERVKKLKERLPDFEPGLAIVQVGGREDSNVYIRMKMKAAKEIGIDAQHVKLPRSITEIELLSR 90 (216)
Q Consensus 11 ~il~Gk~vA~~i~~~ik~~v~~l~~~~~~~~P~LaiI~vg~~~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~ 90 (216)
++|||+.+|++++++++++++.|++ +.++.|+|++|++|+||+|..|+++|.|+|+++||.++.++||++++|+|+++.
T Consensus 1 ~~idGk~lA~~i~~~lk~~v~~~~~-~~~~~P~LavilvgddpaS~~YV~~K~k~~~~iGi~~~~~~l~~~~t~~eLl~~ 79 (283)
T COG0190 1 MIIDGKALAEKIREELKEKVEALKA-KGGFKPGLAVILVGDDPASQVYVRSKKKAAEEIGIASELYDLPEDITEEELLAL 79 (283)
T ss_pred CccchHHHHHHHHHHHHHHHHHHHh-ccCCCceEEEEEeCCCHHHHHHHHHHHHHHHHcCCeeEEEeCCCcCCHHHHHHH
Confidence 3799999999999999999999997 568999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCccEEEEeCCCCCCCCCCHHHHhhhcCCCCCcccCCccchhHhhcCCCCCcccCCHHHHHHHHHHhCCCCCC
Q psy7981 91 LKKLNEDPSVHGIIVQMPLDSDNDINAMLVTDSVSPEKDVDGLNTINEGRVAIGDMNGFIPCTPNGVLELIKRTNVTIAG 170 (216)
Q Consensus 91 I~~lN~D~~V~GIlvqlPL~~P~~id~~~i~~~I~p~KDVDG~~~~n~G~l~~~~~~~~~PcTa~av~~lL~~~~i~l~G 170 (216)
|++||+|++|||||||+|| |+|+|++.++++|+|+||||||||+|+|+|+.+. ..|+||||+|||+||++|+++++|
T Consensus 80 I~~lN~D~~v~GIlVQlPL--p~hld~~~il~~I~p~KDVDG~hp~N~g~L~~~~-~~~~PCTp~gi~~ll~~~~i~l~G 156 (283)
T COG0190 80 IDELNADPEVDGILVQLPL--PKHLDEQKLLQAIDPEKDVDGFHPYNLGKLAQGE-PGFLPCTPAGIMTLLEEYGIDLRG 156 (283)
T ss_pred HHHhcCCCCCcEEEEeCCC--CCCCCHHHHHhhcCcCCCccccChhHhcchhcCC-CCCCCCCHHHHHHHHHHhCCCCCC
Confidence 9999999999999999999 9999999999999999999999999999999982 489999999999999999999999
Q ss_pred CeEEEecCCCcccHHHHHHhhhCCCEEEEecCCCCChHHHHhcC
Q psy7981 171 TNAVVLGRSKIVGTPAAELLKWKHATVTVCHSKTKNIQDVVKSP 214 (216)
Q Consensus 171 k~vvViGrS~~VG~Pla~lL~~~~ATVtichs~T~~l~~~~k~a 214 (216)
|+|||||||++||||+++||+++|||||+|||+|+|+.+++|+|
T Consensus 157 k~~vVVGrS~iVGkPla~lL~~~naTVtvcHs~T~~l~~~~k~A 200 (283)
T COG0190 157 KNVVVVGRSNIVGKPLALLLLNANATVTVCHSRTKDLASITKNA 200 (283)
T ss_pred CEEEEECCCCcCcHHHHHHHHhCCCEEEEEcCCCCCHHHHhhhC
Confidence 99999999999999999999999999999999999999999997
No 7
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=100.00 E-value=2.1e-72 Score=497.39 Aligned_cols=200 Identities=39% Similarity=0.677 Sum_probs=195.2
Q ss_pred hhhcccHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcchHHHHHHHHHHHHHcCcceEEEeCCCCCCHHHHHH
Q psy7981 10 AQILSGTAVSGDIREGLKERVKKLKERLPDFEPGLAIVQVGGREDSNVYIRMKMKAAKEIGIDAQHVKLPRSITEIELLS 89 (216)
Q Consensus 10 a~il~Gk~vA~~i~~~ik~~v~~l~~~~~~~~P~LaiI~vg~~~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~ 89 (216)
|.+||||++|++++++++++++.|+++ |++|+|++|++|+||+|..|+++|+|+|+++||++++++||++++|+|+++
T Consensus 1 ~~il~Gk~va~~i~~~l~~~v~~l~~~--g~~P~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~ 78 (282)
T PRK14169 1 ATRLDGRAVSKKILADLKQTVAKLAQQ--DVTPTLAVVLVGSDPASEVYVRNKQRRAEDIGVRSLMFRLPEATTQADLLA 78 (282)
T ss_pred CeeeehHHHHHHHHHHHHHHHHHHHhC--CCCCeEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHH
Confidence 468999999999999999999999854 899999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCccEEEEeCCCCCCCCCCHHHHhhhcCCCCCcccCCccchhHhhcCCCCCcccCCHHHHHHHHHHhCCCCC
Q psy7981 90 RLKKLNEDPSVHGIIVQMPLDSDNDINAMLVTDSVSPEKDVDGLNTINEGRVAIGDMNGFIPCTPNGVLELIKRTNVTIA 169 (216)
Q Consensus 90 ~I~~lN~D~~V~GIlvqlPL~~P~~id~~~i~~~I~p~KDVDG~~~~n~G~l~~~~~~~~~PcTa~av~~lL~~~~i~l~ 169 (216)
.|++||+|++|||||||+|| |+|+|+++++++|+|+||||||||.|+|+|+.|+ .+|+||||+||++||++|+++++
T Consensus 79 ~I~~lN~D~~V~GIlvqlPL--p~~i~~~~i~~~I~p~KDVDGl~~~N~g~l~~~~-~~~~PcTp~avi~lL~~~~i~l~ 155 (282)
T PRK14169 79 KVAELNHDPDVDAILVQLPL--PAGLDEQAVIDAIDPDKDVDGFSPVSVGRLWANE-PTVVASTPYGIMALLDAYDIDVA 155 (282)
T ss_pred HHHHHhCCCCCCEEEEeCCC--CCCCCHHHHHhhcCcccCcccCChhhhHHHhcCC-CCCCCCCHHHHHHHHHHhCCCCC
Confidence 99999999999999999999 9999999999999999999999999999999984 48999999999999999999999
Q ss_pred CCeEEEecCCCcccHHHHHHhhhCCCEEEEecCCCCChHHHHhcC
Q psy7981 170 GTNAVVLGRSKIVGTPAAELLKWKHATVTVCHSKTKNIQDVVKSP 214 (216)
Q Consensus 170 Gk~vvViGrS~~VG~Pla~lL~~~~ATVtichs~T~~l~~~~k~a 214 (216)
||+|||||||++||+|+++||+++|||||+|||+|+||++++++|
T Consensus 156 Gk~vvViGrS~iVGkPla~lL~~~~atVtichs~T~~l~~~~~~A 200 (282)
T PRK14169 156 GKRVVIVGRSNIVGRPLAGLMVNHDATVTIAHSKTRNLKQLTKEA 200 (282)
T ss_pred CCEEEEECCCccchHHHHHHHHHCCCEEEEECCCCCCHHHHHhhC
Confidence 999999999999999999999999999999999999999999997
No 8
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=100.00 E-value=1.8e-72 Score=507.70 Aligned_cols=204 Identities=41% Similarity=0.688 Sum_probs=196.8
Q ss_pred hhhhhcccHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcchHHHHHHHHHHHHHcCcceEEEeCCCCCCHHHH
Q psy7981 8 QQAQILSGTAVSGDIREGLKERVKKLKERLPDFEPGLAIVQVGGREDSNVYIRMKMKAAKEIGIDAQHVKLPRSITEIEL 87 (216)
Q Consensus 8 ~~a~il~Gk~vA~~i~~~ik~~v~~l~~~~~~~~P~LaiI~vg~~~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el 87 (216)
.++++||||++|++|+++++++++.|+++ .|++|+|++|+||+||+|..|+++|+|+|+++||+++.++||++++|+|+
T Consensus 54 ~~~~ildGk~vA~~i~~~lk~~v~~l~~~-~g~~P~LaiIlvGddpaS~~Yv~~k~K~a~~~GI~~~~~~l~~~~te~el 132 (345)
T PLN02897 54 QKTVVIDGNVIAEEIRTKIASEVRKMKKA-VGKVPGLAVVLVGQQRDSQTYVRNKIKACEETGIKSLLAELPEDCTEGQI 132 (345)
T ss_pred ccceEeehHHHHHHHHHHHHHHHHHHHhc-cCCCCeEEEEEeCCChHHHHHHHHHHHHHHhcCCEEEEEECCCCCCHHHH
Confidence 46789999999999999999999999854 37899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCccEEEEeCCCCCCCCCCHHHHhhhcCCCCCcccCCccchhHhhcCCC-CCcccCCHHHHHHHHHHhCC
Q psy7981 88 LSRLKKLNEDPSVHGIIVQMPLDSDNDINAMLVTDSVSPEKDVDGLNTINEGRVAIGDM-NGFIPCTPNGVLELIKRTNV 166 (216)
Q Consensus 88 ~~~I~~lN~D~~V~GIlvqlPL~~P~~id~~~i~~~I~p~KDVDG~~~~n~G~l~~~~~-~~~~PcTa~av~~lL~~~~i 166 (216)
++.|++||+|++|||||||+|| |+|+|+++++++|+|+||||||||.|+|+|+.|.. ..|+||||+||++||++|++
T Consensus 133 l~~I~~lN~D~~V~GIlVQlPL--P~hid~~~i~~~I~p~KDVDGl~p~N~G~L~~~~~~~~~~PCTp~avi~LL~~~~i 210 (345)
T PLN02897 133 LSALRKFNEDTSIHGILVQLPL--PQHLDESKILNMVRLEKDVDGFHPLNVGNLAMRGREPLFVSCTPKGCVELLIRSGV 210 (345)
T ss_pred HHHHHHHhCCCCCCEEEEeCCC--CCCCCHHHHHhccCcccCccCCCHHHHHHHhcCCCCCCCcCCCHHHHHHHHHHhCC
Confidence 9999999999999999999999 99999999999999999999999999999998633 38999999999999999999
Q ss_pred CCCCCeEEEecCCCcccHHHHHHhhhCCCEEEEecCCCCChHHHHhcC
Q psy7981 167 TIAGTNAVVLGRSKIVGTPAAELLKWKHATVTVCHSKTKNIQDVVKSP 214 (216)
Q Consensus 167 ~l~Gk~vvViGrS~~VG~Pla~lL~~~~ATVtichs~T~~l~~~~k~a 214 (216)
+++||+|||||||++||+|+|+||+++|||||+|||+|+|+++++++|
T Consensus 211 ~l~GK~vvVIGRS~iVGkPla~LL~~~~ATVTicHs~T~nl~~~~~~A 258 (345)
T PLN02897 211 EIAGKNAVVIGRSNIVGLPMSLLLQRHDATVSTVHAFTKDPEQITRKA 258 (345)
T ss_pred CCCCCEEEEECCCccccHHHHHHHHHCCCEEEEEcCCCCCHHHHHhhC
Confidence 999999999999999999999999999999999999999999999997
No 9
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=100.00 E-value=1.7e-72 Score=498.66 Aligned_cols=202 Identities=48% Similarity=0.805 Sum_probs=197.0
Q ss_pred hhhhhcccHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcchHHHHHHHHHHHHHcCcceEEEeCCCCCCHHHH
Q psy7981 8 QQAQILSGTAVSGDIREGLKERVKKLKERLPDFEPGLAIVQVGGREDSNVYIRMKMKAAKEIGIDAQHVKLPRSITEIEL 87 (216)
Q Consensus 8 ~~a~il~Gk~vA~~i~~~ik~~v~~l~~~~~~~~P~LaiI~vg~~~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el 87 (216)
||+.+|+|+++|+.++++++++++.|+++ |++|+|++|++|+||+|..|+++|+|+|+++||++++++||++++|+||
T Consensus 1 ~~~~il~Gk~vA~~i~~~l~~~v~~l~~~--g~~P~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el 78 (284)
T PRK14190 1 MMAVIIDGKEVAKEKREQLKEEVVKLKEQ--GIVPGLAVILVGDDPASHSYVRGKKKAAEKVGIYSELYEFPADITEEEL 78 (284)
T ss_pred CCCeEeeHHHHHHHHHHHHHHHHHHHHhC--CCCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHH
Confidence 56789999999999999999999999854 8999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCccEEEEeCCCCCCCCCCHHHHhhhcCCCCCcccCCccchhHhhcCCCCCcccCCHHHHHHHHHHhCCC
Q psy7981 88 LSRLKKLNEDPSVHGIIVQMPLDSDNDINAMLVTDSVSPEKDVDGLNTINEGRVAIGDMNGFIPCTPNGVLELIKRTNVT 167 (216)
Q Consensus 88 ~~~I~~lN~D~~V~GIlvqlPL~~P~~id~~~i~~~I~p~KDVDG~~~~n~G~l~~~~~~~~~PcTa~av~~lL~~~~i~ 167 (216)
++.|++||+|++|||||||+|| |+|+|++.++++|+|+||||||||.|+|+|+.|+ .+|+||||+||++||++|+++
T Consensus 79 ~~~I~~lN~D~~V~GIlvq~PL--p~~i~~~~i~~~I~p~KDVDGl~~~n~g~l~~~~-~~~~PcTp~av~~lL~~~~i~ 155 (284)
T PRK14190 79 LALIDRLNADPRINGILVQLPL--PKHIDEKAVIERISPEKDVDGFHPINVGRMMLGQ-DTFLPCTPHGILELLKEYNID 155 (284)
T ss_pred HHHHHHHhCCCCCCEEEEeCCC--CCCCCHHHHHhcCCccccccccCHhhHHHHhcCC-CCCCCCCHHHHHHHHHHcCCC
Confidence 9999999999999999999999 9999999999999999999999999999999994 489999999999999999999
Q ss_pred CCCCeEEEecCCCcccHHHHHHhhhCCCEEEEecCCCCChHHHHhcC
Q psy7981 168 IAGTNAVVLGRSKIVGTPAAELLKWKHATVTVCHSKTKNIQDVVKSP 214 (216)
Q Consensus 168 l~Gk~vvViGrS~~VG~Pla~lL~~~~ATVtichs~T~~l~~~~k~a 214 (216)
++||+|||||||++||+|+++||+++|||||+|||+|+||++++++|
T Consensus 156 l~Gk~vvViGrS~iVG~Pla~lL~~~~atVt~chs~t~~l~~~~~~A 202 (284)
T PRK14190 156 ISGKHVVVVGRSNIVGKPVGQLLLNENATVTYCHSKTKNLAELTKQA 202 (284)
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHCCCEEEEEeCCchhHHHHHHhC
Confidence 99999999999999999999999999999999999999999999987
No 10
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=100.00 E-value=1.9e-72 Score=496.85 Aligned_cols=202 Identities=41% Similarity=0.678 Sum_probs=195.0
Q ss_pred hhhhcccHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcchHHHHHHHHHHHHHcCcceEEEeCCCCCCHHHHH
Q psy7981 9 QAQILSGTAVSGDIREGLKERVKKLKERLPDFEPGLAIVQVGGREDSNVYIRMKMKAAKEIGIDAQHVKLPRSITEIELL 88 (216)
Q Consensus 9 ~a~il~Gk~vA~~i~~~ik~~v~~l~~~~~~~~P~LaiI~vg~~~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~ 88 (216)
|+++||||++|+++++++++++++|+++ +..+|+|++|++|+||+|..|+++|.|+|+++||+++.++||++++|+|++
T Consensus 1 ~~~ildGk~iA~~i~~~lk~~i~~l~~~-g~~~P~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~ 79 (278)
T PRK14172 1 MGQIINGKEVALKIKEEIKNFVEERKEN-GLSIPKIASILVGNDGGSIYYMNNQEKVANSLGIDFKKIKLDESISEEDLI 79 (278)
T ss_pred CCeEEeHHHHHHHHHHHHHHHHHHHHhc-CCCCceEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHH
Confidence 4679999999999999999999999864 225699999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCccEEEEeCCCCCCCCCCHHHHhhhcCCCCCcccCCccchhHhhcCCCCCcccCCHHHHHHHHHHhCCCC
Q psy7981 89 SRLKKLNEDPSVHGIIVQMPLDSDNDINAMLVTDSVSPEKDVDGLNTINEGRVAIGDMNGFIPCTPNGVLELIKRTNVTI 168 (216)
Q Consensus 89 ~~I~~lN~D~~V~GIlvqlPL~~P~~id~~~i~~~I~p~KDVDG~~~~n~G~l~~~~~~~~~PcTa~av~~lL~~~~i~l 168 (216)
+.|++||+|++|||||||+|| |+|+|++.++++|+|+||||||||.|+|+|+.|+ .+|+||||+||++||++|++++
T Consensus 80 ~~I~~lN~d~~V~GIlvqlPL--P~~~~~~~i~~~I~p~KDVDGl~~~n~g~l~~g~-~~~~PcTp~av~~lL~~~~i~l 156 (278)
T PRK14172 80 NEIEELNKDNNVHGIMLQLPL--PKHLDEKKITNKIDANKDIDCLTFISVGKFYKGE-KCFLPCTPNSVITLIKSLNIDI 156 (278)
T ss_pred HHHHHHhCCCCCCeEEEcCCC--CCCCCHHHHHhccCcccccCccCHhhHHHHhCCC-CCCcCCCHHHHHHHHHHhCCCC
Confidence 999999999999999999999 9999999999999999999999999999999994 4899999999999999999999
Q ss_pred CCCeEEEecCCCcccHHHHHHhhhCCCEEEEecCCCCChHHHHhcC
Q psy7981 169 AGTNAVVLGRSKIVGTPAAELLKWKHATVTVCHSKTKNIQDVVKSP 214 (216)
Q Consensus 169 ~Gk~vvViGrS~~VG~Pla~lL~~~~ATVtichs~T~~l~~~~k~a 214 (216)
+||+|||||||.+||+|+++||+++|||||+|||+|+||++++++|
T Consensus 157 ~Gk~vvViGrS~~VGkPla~lL~~~~AtVt~chs~T~~l~~~~~~A 202 (278)
T PRK14172 157 EGKEVVVIGRSNIVGKPVAQLLLNENATVTICHSKTKNLKEVCKKA 202 (278)
T ss_pred CCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCCCCCHHHHHhhC
Confidence 9999999999999999999999999999999999999999999997
No 11
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=100.00 E-value=2.5e-72 Score=496.90 Aligned_cols=200 Identities=42% Similarity=0.678 Sum_probs=194.7
Q ss_pred hhcccHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcchHHHHHHHHHHHHHcCcceEEEeCCCCCCHHHHHHH
Q psy7981 11 QILSGTAVSGDIREGLKERVKKLKERLPDFEPGLAIVQVGGREDSNVYIRMKMKAAKEIGIDAQHVKLPRSITEIELLSR 90 (216)
Q Consensus 11 ~il~Gk~vA~~i~~~ik~~v~~l~~~~~~~~P~LaiI~vg~~~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~ 90 (216)
++||||++|++|+++++++++.|+++ |++|+|++|++|+||+|.+|+++|+|+|+++||+++.++||++++|+|+++.
T Consensus 2 ~il~Gk~~a~~i~~~l~~~v~~l~~~--g~~P~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~t~~~l~~~ 79 (282)
T PRK14166 2 TLLDGKALSAKIKEELKEKNQFLKSK--GIESCLAVILVGDNPASQTYVKSKAKACEECGIKSLVYHLNENTTQNELLAL 79 (282)
T ss_pred eeeehHHHHHHHHHHHHHHHHHHHhC--CCCceEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHH
Confidence 47999999999999999999999854 7999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCccEEEEeCCCCCCCCCCHHHHhhhcCCCCCcccCCccchhHhhcCCCCCcccCCHHHHHHHHHHhCCCCCC
Q psy7981 91 LKKLNEDPSVHGIIVQMPLDSDNDINAMLVTDSVSPEKDVDGLNTINEGRVAIGDMNGFIPCTPNGVLELIKRTNVTIAG 170 (216)
Q Consensus 91 I~~lN~D~~V~GIlvqlPL~~P~~id~~~i~~~I~p~KDVDG~~~~n~G~l~~~~~~~~~PcTa~av~~lL~~~~i~l~G 170 (216)
|++||+|++|||||||+|| |+|+|+++++++|+|+||||||||.|+|+|+.|...+|+||||+||++||++|+++++|
T Consensus 80 I~~lN~D~~V~GIivq~PL--P~~i~~~~i~~~I~p~KDVDGl~~~N~g~l~~g~~~~~~PcTp~avi~lL~~y~i~l~G 157 (282)
T PRK14166 80 INTLNHDDSVHGILVQLPL--PDHICKDLILESIISSKDVDGFHPINVGYLNLGLESGFLPCTPLGVMKLLKAYEIDLEG 157 (282)
T ss_pred HHHHhCCCCCCEEEEeCCC--CCCCCHHHHHhccCcccCcccCChhhhHHHhcCCCCCCcCCCHHHHHHHHHHhCCCCCC
Confidence 9999999999999999999 99999999999999999999999999999999942489999999999999999999999
Q ss_pred CeEEEecCCCcccHHHHHHhhhCCCEEEEecCCCCChHHHHhcC
Q psy7981 171 TNAVVLGRSKIVGTPAAELLKWKHATVTVCHSKTKNIQDVVKSP 214 (216)
Q Consensus 171 k~vvViGrS~~VG~Pla~lL~~~~ATVtichs~T~~l~~~~k~a 214 (216)
|+|||||||.+||+|+++||+++|||||+|||+|+||++++++|
T Consensus 158 k~vvVvGrS~iVGkPla~lL~~~~atVt~chs~T~nl~~~~~~A 201 (282)
T PRK14166 158 KDAVIIGASNIVGRPMATMLLNAGATVSVCHIKTKDLSLYTRQA 201 (282)
T ss_pred CEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCCCCHHHHHhhC
Confidence 99999999999999999999999999999999999999999997
No 12
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=100.00 E-value=2.2e-72 Score=497.49 Aligned_cols=203 Identities=38% Similarity=0.669 Sum_probs=196.5
Q ss_pred hhhhhcccHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcchHHHHHHHHHHHHHcCcceEEEeCCCCCCHHHH
Q psy7981 8 QQAQILSGTAVSGDIREGLKERVKKLKERLPDFEPGLAIVQVGGREDSNVYIRMKMKAAKEIGIDAQHVKLPRSITEIEL 87 (216)
Q Consensus 8 ~~a~il~Gk~vA~~i~~~ik~~v~~l~~~~~~~~P~LaiI~vg~~~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el 87 (216)
|.+.+||||++|++|++++++++++|+++ ++++|+||+|++|+||+|..|+++|+|+|+++||+++.++||++++++|+
T Consensus 1 ~~~~ildGk~ia~~i~~~lk~~i~~l~~~-~~~~P~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~s~~el 79 (284)
T PRK14177 1 MSPILLDGKKLSEKIRNEIRETIEERKTK-NKRIPKLATILVGNNPASETYVSMKVKACHKVGMGSEMIRLKEQTTTEEL 79 (284)
T ss_pred CCCeEeEhHHHHHHHHHHHHHHHHHHHhc-CCCCCeEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHH
Confidence 44789999999999999999999999864 36789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCccEEEEeCCCCCCCCCCHHHHhhhcCCCCCcccCCccchhHhhcCCCCCcccCCHHHHHHHHHHhCCC
Q psy7981 88 LSRLKKLNEDPSVHGIIVQMPLDSDNDINAMLVTDSVSPEKDVDGLNTINEGRVAIGDMNGFIPCTPNGVLELIKRTNVT 167 (216)
Q Consensus 88 ~~~I~~lN~D~~V~GIlvqlPL~~P~~id~~~i~~~I~p~KDVDG~~~~n~G~l~~~~~~~~~PcTa~av~~lL~~~~i~ 167 (216)
++.|++||+|++|||||||+|| |+|+|++.++++|+|+||||||||.|+|+|+.|+ ..|+||||+||++||++|+++
T Consensus 80 ~~~I~~lN~D~~V~GIlvqlPL--p~~i~~~~i~~~I~p~KDVDGl~~~n~g~l~~g~-~~~~PcTp~avi~ll~~y~i~ 156 (284)
T PRK14177 80 LGVIDKLNLDPNVDGILLQHPV--PSQIDERAAFDRIALEKDVDGVTTLSFGKLSMGV-ETYLPCTPYGMVLLLKEYGID 156 (284)
T ss_pred HHHHHHHhCCCCCCeEEEcCCC--CCCCCHHHHHhccCcccccccCChhhHHHHHcCC-CCCCCCCHHHHHHHHHHhCCC
Confidence 9999999999999999999999 9999999999999999999999999999999994 489999999999999999999
Q ss_pred CCCCeEEEecCCCcccHHHHHHhhhCCCEEEEecCCCCChHHHHhcC
Q psy7981 168 IAGTNAVVLGRSKIVGTPAAELLKWKHATVTVCHSKTKNIQDVVKSP 214 (216)
Q Consensus 168 l~Gk~vvViGrS~~VG~Pla~lL~~~~ATVtichs~T~~l~~~~k~a 214 (216)
++||+|||||||++||+|+++||+++|||||+|||+|+||++++|+|
T Consensus 157 l~Gk~vvViGrS~iVGkPla~lL~~~~atVt~chs~T~~l~~~~~~A 203 (284)
T PRK14177 157 VTGKNAVVVGRSPILGKPMAMLLTEMNATVTLCHSKTQNLPSIVRQA 203 (284)
T ss_pred CCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCCCCHHHHHhhC
Confidence 99999999999999999999999999999999999999999999998
No 13
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=100.00 E-value=2.4e-72 Score=496.80 Aligned_cols=199 Identities=38% Similarity=0.690 Sum_probs=194.1
Q ss_pred hhcccHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcchHHHHHHHHHHHHHcCcceEEEeCCCCCCHHHHHHH
Q psy7981 11 QILSGTAVSGDIREGLKERVKKLKERLPDFEPGLAIVQVGGREDSNVYIRMKMKAAKEIGIDAQHVKLPRSITEIELLSR 90 (216)
Q Consensus 11 ~il~Gk~vA~~i~~~ik~~v~~l~~~~~~~~P~LaiI~vg~~~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~ 90 (216)
++||||++|++|+++++++++.|+++ |++|+||+|++|+||+|..|+++|+|+|+++||+++.++||++++|+|+++.
T Consensus 2 ~ildGk~iA~~i~~~ik~~v~~l~~~--g~~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~t~~~l~~~ 79 (282)
T PRK14182 2 NLIDGKQIAAKVKGEVATEVRALAAR--GVQTGLTVVRVGDDPASAIYVRGKRKDCEEVGITSVEHHLPATTTQAELLAL 79 (282)
T ss_pred eeeeHHHHHHHHHHHHHHHHHHHHhC--CCCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHH
Confidence 47999999999999999999999864 8999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCccEEEEeCCCCCCCCCCHHHHhhhcCCCCCcccCCccchhHhhcCCCCC-cccCCHHHHHHHHHHhCCCCC
Q psy7981 91 LKKLNEDPSVHGIIVQMPLDSDNDINAMLVTDSVSPEKDVDGLNTINEGRVAIGDMNG-FIPCTPNGVLELIKRTNVTIA 169 (216)
Q Consensus 91 I~~lN~D~~V~GIlvqlPL~~P~~id~~~i~~~I~p~KDVDG~~~~n~G~l~~~~~~~-~~PcTa~av~~lL~~~~i~l~ 169 (216)
|++||+|++|||||||+|| |+|+|+.+++++|+|+||||||||+|+|+|+.|+ .. |+||||+||++||++|+++++
T Consensus 80 I~~lN~d~~V~GIivqlPL--p~~i~~~~i~~~I~p~KDVDGl~~~n~g~l~~g~-~~~~~PcTp~avi~ll~~~~i~l~ 156 (282)
T PRK14182 80 IARLNADPAVHGILVQLPL--PKHVDERAVLDAISPAKDADGFHPFNVGALSIGI-AGVPRPCTPAGVMRMLDEARVDPK 156 (282)
T ss_pred HHHHhCCCCCCEEEEeCCC--CCCCCHHHHHhccCcccCcCCCCHhHHHHHhCCC-CCCCCCCCHHHHHHHHHHhCCCCC
Confidence 9999999999999999999 9999999999999999999999999999999995 45 999999999999999999999
Q ss_pred CCeEEEecCCCcccHHHHHHhhhCCCEEEEecCCCCChHHHHhcC
Q psy7981 170 GTNAVVLGRSKIVGTPAAELLKWKHATVTVCHSKTKNIQDVVKSP 214 (216)
Q Consensus 170 Gk~vvViGrS~~VG~Pla~lL~~~~ATVtichs~T~~l~~~~k~a 214 (216)
||+|||||||++||+|+++||+++|||||+|||+|+||++++++|
T Consensus 157 Gk~vvViGrS~iVGkPla~lL~~~~AtVtichs~T~nl~~~~~~A 201 (282)
T PRK14182 157 GKRALVVGRSNIVGKPMAMMLLERHATVTIAHSRTADLAGEVGRA 201 (282)
T ss_pred CCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCCCCHHHHHhhC
Confidence 999999999999999999999999999999999999999999987
No 14
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=100.00 E-value=2.7e-72 Score=497.17 Aligned_cols=202 Identities=38% Similarity=0.676 Sum_probs=196.1
Q ss_pred hhhhhcccHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcchHHHHHHHHHHHHHcCcceEEEeCCCCCCHHHH
Q psy7981 8 QQAQILSGTAVSGDIREGLKERVKKLKERLPDFEPGLAIVQVGGREDSNVYIRMKMKAAKEIGIDAQHVKLPRSITEIEL 87 (216)
Q Consensus 8 ~~a~il~Gk~vA~~i~~~ik~~v~~l~~~~~~~~P~LaiI~vg~~~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el 87 (216)
||+.+||||++|++|+++++++++.|+++ |++|+|++|++|+|++|..|+++|+|+|+++||+++.++||++++|+|+
T Consensus 1 ~~~~il~Gk~va~~i~~~l~~~v~~l~~~--g~~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~t~~el 78 (284)
T PRK14193 1 MTAIILDGKATADEIKADLAERVAALKEK--GITPGLGTVLVGDDPGSQAYVRGKHRDCAEVGITSIRRDLPADATQEEL 78 (284)
T ss_pred CCCeEeeHHHHHHHHHHHHHHHHHHHHhC--CCCceEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHH
Confidence 45678999999999999999999999854 7899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCccEEEEeCCCCCCCCCCHHHHhhhcCCCCCcccCCccchhHhhcCCCCCcccCCHHHHHHHHHHhCCC
Q psy7981 88 LSRLKKLNEDPSVHGIIVQMPLDSDNDINAMLVTDSVSPEKDVDGLNTINEGRVAIGDMNGFIPCTPNGVLELIKRTNVT 167 (216)
Q Consensus 88 ~~~I~~lN~D~~V~GIlvqlPL~~P~~id~~~i~~~I~p~KDVDG~~~~n~G~l~~~~~~~~~PcTa~av~~lL~~~~i~ 167 (216)
++.|++||+|++|||||||+|| |+|+|+++++++|+|+||||||||.|+|+|+.|+ ..|+||||+||++||++|+++
T Consensus 79 ~~~I~~lN~D~~V~GIlvqlPl--P~~id~~~i~~~I~p~KDVDGl~~~n~g~l~~~~-~~~~PcTp~av~~ll~~~~i~ 155 (284)
T PRK14193 79 NAVIDELNADPACTGYIVQLPL--PKHLDENAVLERIDPAKDADGLHPTNLGRLVLNE-PAPLPCTPRGIVHLLRRYDVE 155 (284)
T ss_pred HHHHHHHhCCCCCCEEEEeCCC--CCCCCHHHHHhcCCcccCccCCChhhhhHHhCCC-CCCCCCCHHHHHHHHHHhCCC
Confidence 9999999999999999999999 9999999999999999999999999999999994 489999999999999999999
Q ss_pred CCCCeEEEecCCCcccHHHHHHhhh--CCCEEEEecCCCCChHHHHhcC
Q psy7981 168 IAGTNAVVLGRSKIVGTPAAELLKW--KHATVTVCHSKTKNIQDVVKSP 214 (216)
Q Consensus 168 l~Gk~vvViGrS~~VG~Pla~lL~~--~~ATVtichs~T~~l~~~~k~a 214 (216)
++||+|||||||++||+|+++||++ +|||||+|||+|+||++++|+|
T Consensus 156 l~Gk~vvViGrS~~VGkPla~lL~~~~~~atVtvchs~T~~l~~~~k~A 204 (284)
T PRK14193 156 LAGAHVVVIGRGVTVGRPIGLLLTRRSENATVTLCHTGTRDLAAHTRRA 204 (284)
T ss_pred CCCCEEEEECCCCcchHHHHHHHhhccCCCEEEEeCCCCCCHHHHHHhC
Confidence 9999999999999999999999999 8999999999999999999998
No 15
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=100.00 E-value=2.6e-72 Score=499.96 Aligned_cols=201 Identities=39% Similarity=0.694 Sum_probs=196.0
Q ss_pred hhhhcccHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcchHHHHHHHHHHHHHcCcceEEEeCCCCCCHHHHH
Q psy7981 9 QAQILSGTAVSGDIREGLKERVKKLKERLPDFEPGLAIVQVGGREDSNVYIRMKMKAAKEIGIDAQHVKLPRSITEIELL 88 (216)
Q Consensus 9 ~a~il~Gk~vA~~i~~~ik~~v~~l~~~~~~~~P~LaiI~vg~~~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~ 88 (216)
|+++|||+++|++++++++++++.|++. |++|+|++|++|+||+|..|+++|+|+|+++||++++++||++++|+|++
T Consensus 1 ~~~il~Gk~vA~~i~~~l~~~v~~l~~~--g~~P~LaiI~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~ 78 (297)
T PRK14167 1 MTEIIDGNAVAAQIRDDLTDAIETLEDA--GVTPGLATVLMSDDPASETYVSMKQRDCEEVGIEAIDVEIDPDAPAEELY 78 (297)
T ss_pred CCeEEeHHHHHHHHHHHHHHHHHHHHhC--CCCceEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHH
Confidence 5689999999999999999999999854 89999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCccEEEEeCCCCCCCCCCHHHHhhhcCCCCCcccCCccchhHhhcCCCCCcccCCHHHHHHHHHHhCCCC
Q psy7981 89 SRLKKLNEDPSVHGIIVQMPLDSDNDINAMLVTDSVSPEKDVDGLNTINEGRVAIGDMNGFIPCTPNGVLELIKRTNVTI 168 (216)
Q Consensus 89 ~~I~~lN~D~~V~GIlvqlPL~~P~~id~~~i~~~I~p~KDVDG~~~~n~G~l~~~~~~~~~PcTa~av~~lL~~~~i~l 168 (216)
+.|++||+|++|||||||+|| |+|+|++.++++|+|+||||||||.|+|+|+.|+ ..|+||||+||++||++|++++
T Consensus 79 ~~I~~lN~D~~V~GIlvq~PL--P~~i~~~~i~~~I~p~KDVDGl~~~n~g~l~~g~-~~~~PcTp~avi~lL~~~~i~l 155 (297)
T PRK14167 79 DTIDELNADEDVHGILVQMPV--PDHVDDREVLRRIDPAKDVDGFHPENVGRLVAGD-ARFKPCTPHGIQKLLAAAGVDT 155 (297)
T ss_pred HHHHHHhCCCCCCEEEEcCCC--CCCCCHHHHHhccCcccCcccCChhhhHHHhCCC-CCCCCCCHHHHHHHHHHhCCCC
Confidence 999999999999999999999 9999999999999999999999999999999994 5899999999999999999999
Q ss_pred CCCeEEEecCCCcccHHHHHHhhhC----CCEEEEecCCCCChHHHHhcC
Q psy7981 169 AGTNAVVLGRSKIVGTPAAELLKWK----HATVTVCHSKTKNIQDVVKSP 214 (216)
Q Consensus 169 ~Gk~vvViGrS~~VG~Pla~lL~~~----~ATVtichs~T~~l~~~~k~a 214 (216)
+||+|||||||++||+|+++||+++ |||||+|||+|+||++++++|
T Consensus 156 ~Gk~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~T~~l~~~~~~A 205 (297)
T PRK14167 156 EGADVVVVGRSDIVGKPMANLLIQKADGGNATVTVCHSRTDDLAAKTRRA 205 (297)
T ss_pred CCCEEEEECCCcccHHHHHHHHhcCccCCCCEEEEeCCCCCCHHHHHhhC
Confidence 9999999999999999999999998 999999999999999999998
No 16
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=100.00 E-value=4.6e-72 Score=496.29 Aligned_cols=199 Identities=41% Similarity=0.680 Sum_probs=193.5
Q ss_pred hhhhhcccHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcchHHHHHHHHHHHHHcCcceEEEeCCCCCCHHHH
Q psy7981 8 QQAQILSGTAVSGDIREGLKERVKKLKERLPDFEPGLAIVQVGGREDSNVYIRMKMKAAKEIGIDAQHVKLPRSITEIEL 87 (216)
Q Consensus 8 ~~a~il~Gk~vA~~i~~~ik~~v~~l~~~~~~~~P~LaiI~vg~~~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el 87 (216)
|++.+|+|+++|++|+++++++++.| +++|+|++|++|+|++|..|+++|+|+|+++||++++++||++++|+|+
T Consensus 1 m~~~il~Gk~vA~~i~~~l~~~v~~l-----~~~P~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el 75 (287)
T PRK14173 1 MAARELSGPPAAEAVYAELRARLAKL-----PFVPHLRVVRLGEDPASVSYVRLKDRQAKALGLRSQVEVLPESTSQEEL 75 (287)
T ss_pred CCCeEeeHHHHHHHHHHHHHHHHHHh-----CCCCcEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHH
Confidence 45679999999999999999999988 3789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCccEEEEeCCCCCCCCCCHHHHhhhcCCCCCcccCCccchhHhhcCCCCCcccCCHHHHHHHHHHhCCC
Q psy7981 88 LSRLKKLNEDPSVHGIIVQMPLDSDNDINAMLVTDSVSPEKDVDGLNTINEGRVAIGDMNGFIPCTPNGVLELIKRTNVT 167 (216)
Q Consensus 88 ~~~I~~lN~D~~V~GIlvqlPL~~P~~id~~~i~~~I~p~KDVDG~~~~n~G~l~~~~~~~~~PcTa~av~~lL~~~~i~ 167 (216)
++.|++||+|++|||||||+|| |+|+|+++++++|+|+||||||||.|+|+|+.|+ ..|+||||+||++||++|+++
T Consensus 76 ~~~I~~lN~D~~V~GIlvqlPL--P~~i~~~~i~~~I~p~KDVDGl~~~N~g~l~~~~-~~~~PcTp~avi~lL~~~~i~ 152 (287)
T PRK14173 76 LELIARLNADPEVDGILVQLPL--PPHIDFQRVLEAIDPLKDVDGFHPLNVGRLWMGG-EALEPCTPAGVVRLLKHYGIP 152 (287)
T ss_pred HHHHHHHhCCCCCCEEEEeCCC--CCCCCHHHHHhccCccccccccChhhhHHHhcCC-CCCCCCCHHHHHHHHHHcCCC
Confidence 9999999999999999999999 9999999999999999999999999999999994 489999999999999999999
Q ss_pred CCCCeEEEecCCCcccHHHHHHhhhCCCEEEEecCCCCChHHHHhcC
Q psy7981 168 IAGTNAVVLGRSKIVGTPAAELLKWKHATVTVCHSKTKNIQDVVKSP 214 (216)
Q Consensus 168 l~Gk~vvViGrS~~VG~Pla~lL~~~~ATVtichs~T~~l~~~~k~a 214 (216)
++||+|||||||++||+|+++||+++|||||+|||+|+||++++++|
T Consensus 153 l~Gk~vvViGrS~iVGkPla~lL~~~~aTVtichs~T~~l~~~~~~A 199 (287)
T PRK14173 153 LAGKEVVVVGRSNIVGKPLAALLLREDATVTLAHSKTQDLPAVTRRA 199 (287)
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHCCCEEEEeCCCCCCHHHHHhhC
Confidence 99999999999999999999999999999999999999999999987
No 17
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=100.00 E-value=8.2e-72 Score=494.46 Aligned_cols=203 Identities=36% Similarity=0.689 Sum_probs=197.2
Q ss_pred hhhhhcccHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcchHHHHHHHHHHHHHcCcceEEEeCCCCCCHHHH
Q psy7981 8 QQAQILSGTAVSGDIREGLKERVKKLKERLPDFEPGLAIVQVGGREDSNVYIRMKMKAAKEIGIDAQHVKLPRSITEIEL 87 (216)
Q Consensus 8 ~~a~il~Gk~vA~~i~~~ik~~v~~l~~~~~~~~P~LaiI~vg~~~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el 87 (216)
.|+++||||++|++|+++++++++.|+++ .|++|+||+|++|+||+|..|+++|+|+|+++||+++.++||++++|+|+
T Consensus 6 ~~~~ildGk~iA~~i~~~l~~~i~~l~~~-~g~~P~Laii~vg~d~aS~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el 84 (287)
T PRK14176 6 YESRIIDGKALAKKIEAEVRSGVERLKSN-RGITPGLATILVGDDPASKMYVRLKHKACERVGIRAEDQFLPADTTQEEL 84 (287)
T ss_pred cceEEEEhHHHHHHHHHHHHHHHHHHHhc-cCCCCeEEEEEECCCcchHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHH
Confidence 46789999999999999999999999854 37899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCccEEEEeCCCCCCCCCCHHHHhhhcCCCCCcccCCccchhHhhcCCCCCcccCCHHHHHHHHHHhCCC
Q psy7981 88 LSRLKKLNEDPSVHGIIVQMPLDSDNDINAMLVTDSVSPEKDVDGLNTINEGRVAIGDMNGFIPCTPNGVLELIKRTNVT 167 (216)
Q Consensus 88 ~~~I~~lN~D~~V~GIlvqlPL~~P~~id~~~i~~~I~p~KDVDG~~~~n~G~l~~~~~~~~~PcTa~av~~lL~~~~i~ 167 (216)
++.|++||+|++|||||||+|| |+|+|+++++++|+|+||||||||.|+|+|+.|+ .+|+||||+||++||++|+++
T Consensus 85 ~~~I~~LN~D~~V~GIlvqlPL--P~~i~~~~i~~~I~p~KDVDGl~~~N~g~l~~g~-~~~~PcTp~av~~ll~~~~i~ 161 (287)
T PRK14176 85 LELIDSLNKRKDVHGILLQLPL--PKHLDPQEAMEAIDPAKDADGFHPYNMGKLMIGD-EGLVPCTPHGVIRALEEYGVD 161 (287)
T ss_pred HHHHHHHhCCCCCCeEEEcCCC--CCCCCHHHHHhccCccccccccChhhhhhHhcCC-CCCCCCcHHHHHHHHHHcCCC
Confidence 9999999999999999999999 9999999999999999999999999999999994 489999999999999999999
Q ss_pred CCCCeEEEecCCCcccHHHHHHhhhCCCEEEEecCCCCChHHHHhcC
Q psy7981 168 IAGTNAVVLGRSKIVGTPAAELLKWKHATVTVCHSKTKNIQDVVKSP 214 (216)
Q Consensus 168 l~Gk~vvViGrS~~VG~Pla~lL~~~~ATVtichs~T~~l~~~~k~a 214 (216)
++||+|+|||||++||+|+++||+++|||||+|||+|+||++++++|
T Consensus 162 l~Gk~vvViGrs~iVGkPla~lL~~~~atVtv~hs~T~~l~~~~~~A 208 (287)
T PRK14176 162 IEGKNAVIVGHSNVVGKPMAAMLLNRNATVSVCHVFTDDLKKYTLDA 208 (287)
T ss_pred CCCCEEEEECCCcccHHHHHHHHHHCCCEEEEEeccCCCHHHHHhhC
Confidence 99999999999999999999999999999999999999999999987
No 18
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=100.00 E-value=9e-72 Score=496.47 Aligned_cols=204 Identities=39% Similarity=0.679 Sum_probs=197.0
Q ss_pred hhhhhcccHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcchHHHHHHHHHHHHHcCcceEEEeCCCCCCHHHH
Q psy7981 8 QQAQILSGTAVSGDIREGLKERVKKLKERLPDFEPGLAIVQVGGREDSNVYIRMKMKAAKEIGIDAQHVKLPRSITEIEL 87 (216)
Q Consensus 8 ~~a~il~Gk~vA~~i~~~ik~~v~~l~~~~~~~~P~LaiI~vg~~~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el 87 (216)
||+++||||++|++|+++++++++.|+++ .|++|+|++|++|+||+|..|+++|+|+|+++||+++.++||++++|+|+
T Consensus 1 m~~~ildGk~iA~~i~~~lk~~v~~l~~~-~g~~P~LaiI~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~t~~el 79 (297)
T PRK14168 1 MSAKIIKGTEIREEILEEIRGEVAELKEK-YGKVPGLVTILVGESPASLSYVTLKIKTAHRLGFHEIQDNQSVDITEEEL 79 (297)
T ss_pred CCCeEeeHHHHHHHHHHHHHHHHHHHHHc-CCCCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHH
Confidence 45679999999999999999999999854 37899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCccEEEEeCCCCCCCCCCHHHHhhhcCCCCCcccCCccchhHhhcCCCC-CcccCCHHHHHHHHHHhCC
Q psy7981 88 LSRLKKLNEDPSVHGIIVQMPLDSDNDINAMLVTDSVSPEKDVDGLNTINEGRVAIGDMN-GFIPCTPNGVLELIKRTNV 166 (216)
Q Consensus 88 ~~~I~~lN~D~~V~GIlvqlPL~~P~~id~~~i~~~I~p~KDVDG~~~~n~G~l~~~~~~-~~~PcTa~av~~lL~~~~i 166 (216)
++.|++||+|++|||||||+|| |+|+|+++++++|+|+||||||||.|+|+|+.|+.. +|+||||+||++||++|++
T Consensus 80 ~~~I~~lN~D~~V~GIivqlPl--P~~i~~~~i~~~I~p~KDVDGl~~~n~g~l~~~~~~~~~~PcTp~avi~lL~~~~i 157 (297)
T PRK14168 80 LALIDKYNNDDSIHGILVQLPL--PKHINEKKVLNAIDPDKDVDGFHPVNVGRLMIGGDEVKFLPCTPAGIQEMLVRSGV 157 (297)
T ss_pred HHHHHHHhCCCCCCEEEEeCCC--CCCCCHHHHHhccCccccccccChhhHHHHhcCCCCCCCcCCCHHHHHHHHHHhCC
Confidence 9999999999999999999999 999999999999999999999999999999999643 8999999999999999999
Q ss_pred CCCCCeEEEecCCCcccHHHHHHhhhC----CCEEEEecCCCCChHHHHhcC
Q psy7981 167 TIAGTNAVVLGRSKIVGTPAAELLKWK----HATVTVCHSKTKNIQDVVKSP 214 (216)
Q Consensus 167 ~l~Gk~vvViGrS~~VG~Pla~lL~~~----~ATVtichs~T~~l~~~~k~a 214 (216)
+++||+|||||||++||+|+|+||+++ |||||+|||+|+||++++++|
T Consensus 158 ~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~atVtv~hs~T~~l~~~~~~A 209 (297)
T PRK14168 158 ETSGAEVVVVGRSNIVGKPIANMMTQKGPGANATVTIVHTRSKNLARHCQRA 209 (297)
T ss_pred CCCCCEEEEECCCCcccHHHHHHHHhcccCCCCEEEEecCCCcCHHHHHhhC
Confidence 999999999999999999999999999 899999999999999999987
No 19
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=100.00 E-value=1e-71 Score=496.07 Aligned_cols=202 Identities=36% Similarity=0.651 Sum_probs=196.3
Q ss_pred hhhhcccHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcchHHHHHHHHHHHHHcCcceEEEeCCCCCCHHHHH
Q psy7981 9 QAQILSGTAVSGDIREGLKERVKKLKERLPDFEPGLAIVQVGGREDSNVYIRMKMKAAKEIGIDAQHVKLPRSITEIELL 88 (216)
Q Consensus 9 ~a~il~Gk~vA~~i~~~ik~~v~~l~~~~~~~~P~LaiI~vg~~~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~ 88 (216)
|+.+||||++|++|+++++++++.|+++ .|++|+|++|++|+||+|..|+++|.|+|+++||+++.++||++++|+|++
T Consensus 1 ~~~ildGk~iA~~i~~~lk~~v~~l~~~-~g~~p~LaiI~vgdd~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~ 79 (297)
T PRK14186 1 MALILDGKALAAEIEQRLQAQIESNLPK-AGRPPGLAVLRVGDDPASAVYVRNKEKACARVGIASFGKHLPADTSQAEVE 79 (297)
T ss_pred CCEEeehHHHHHHHHHHHHHHHHHHHHh-cCCCceEEEEEeCCChHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHH
Confidence 5689999999999999999999999854 378999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCccEEEEeCCCCCCCCCCHHHHhhhcCCCCCcccCCccchhHhhcCCCCCcccCCHHHHHHHHHHhCCCC
Q psy7981 89 SRLKKLNEDPSVHGIIVQMPLDSDNDINAMLVTDSVSPEKDVDGLNTINEGRVAIGDMNGFIPCTPNGVLELIKRTNVTI 168 (216)
Q Consensus 89 ~~I~~lN~D~~V~GIlvqlPL~~P~~id~~~i~~~I~p~KDVDG~~~~n~G~l~~~~~~~~~PcTa~av~~lL~~~~i~l 168 (216)
+.|++||+|++|||||||+|| |+|+|+++++++|+|+||||||||.|+|+|+.|+ ..|+||||+||++||++|++++
T Consensus 80 ~~I~~lN~D~~V~GIivq~PL--P~~i~~~~i~~~I~p~KDVDGl~~~n~g~l~~~~-~~~~PcTp~aii~lL~~~~i~l 156 (297)
T PRK14186 80 ALIAQLNQDERVDGILLQLPL--PKHLDEVPLLHAIDPDKDADGLHPLNLGRLVKGE-PGLRSCTPAGVMRLLRSQQIDI 156 (297)
T ss_pred HHHHHHhCCCCCCEEEEeCCC--CCCCCHHHHHhccCcccCcccCChhhHHHHhCCC-CCCCCCCHHHHHHHHHHhCCCC
Confidence 999999999999999999999 9999999999999999999999999999999984 4899999999999999999999
Q ss_pred CCCeEEEecCCCcccHHHHHHhhhCCCEEEEecCCCCChHHHHhcC
Q psy7981 169 AGTNAVVLGRSKIVGTPAAELLKWKHATVTVCHSKTKNIQDVVKSP 214 (216)
Q Consensus 169 ~Gk~vvViGrS~~VG~Pla~lL~~~~ATVtichs~T~~l~~~~k~a 214 (216)
+||+|||||||++||+|+++||+++|||||+|||+|+||++++++|
T Consensus 157 ~Gk~vvVIGrS~iVGkPla~lL~~~~atVtv~hs~T~~l~~~~~~A 202 (297)
T PRK14186 157 AGKKAVVVGRSILVGKPLALMLLAANATVTIAHSRTQDLASITREA 202 (297)
T ss_pred CCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCCCCCHHHHHhhC
Confidence 9999999999999999999999999999999999999999999997
No 20
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=100.00 E-value=1.2e-71 Score=494.72 Aligned_cols=200 Identities=40% Similarity=0.673 Sum_probs=194.6
Q ss_pred hhcccHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcchHHHHHHHHHHHHHcCcceEEEeCCCCCCHHHHHHH
Q psy7981 11 QILSGTAVSGDIREGLKERVKKLKERLPDFEPGLAIVQVGGREDSNVYIRMKMKAAKEIGIDAQHVKLPRSITEIELLSR 90 (216)
Q Consensus 11 ~il~Gk~vA~~i~~~ik~~v~~l~~~~~~~~P~LaiI~vg~~~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~ 90 (216)
++|||+++|++|+++++++++.|+++ .|++|+|++|++|+||+|..|+++|+|+|+++||+++.++||++++|+|+++.
T Consensus 2 ~ildGk~iA~~i~~~l~~~v~~l~~~-~g~~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~ 80 (293)
T PRK14185 2 QLIDGKAISAQIKQEIAAEVAEIVAK-GGKRPHLAAILVGHDGGSETYVANKVKACEECGFKSSLIRYESDVTEEELLAK 80 (293)
T ss_pred eeeeHHHHHHHHHHHHHHHHHHHHhc-cCCCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHH
Confidence 47999999999999999999999864 37899999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCccEEEEeCCCCCCCCCCHHHHhhhcCCCCCcccCCccchhHhhcCCCCCcccCCHHHHHHHHHHhCCCCCC
Q psy7981 91 LKKLNEDPSVHGIIVQMPLDSDNDINAMLVTDSVSPEKDVDGLNTINEGRVAIGDMNGFIPCTPNGVLELIKRTNVTIAG 170 (216)
Q Consensus 91 I~~lN~D~~V~GIlvqlPL~~P~~id~~~i~~~I~p~KDVDG~~~~n~G~l~~~~~~~~~PcTa~av~~lL~~~~i~l~G 170 (216)
|++||+|++|||||||+|| |+|+|++.++++|+|+||||||||.|+|+|+.|. .+|+||||+||++||++|+++++|
T Consensus 81 I~~lN~D~~V~GIlvqlPL--P~~i~~~~i~~~I~p~KDVDGl~~~N~g~l~~~~-~~~~PcTp~av~~lL~~~~i~l~G 157 (293)
T PRK14185 81 VRELNQDDDVDGFIVQLPL--PKHISEQKVIEAIDYRKDVDGFHPINVGRMSIGL-PCFVSATPNGILELLKRYHIETSG 157 (293)
T ss_pred HHHHhCCCCCCeEEEecCC--CCCCCHHHHHhccCcccCcCCCCHhhHHHHhCCC-CCCCCCCHHHHHHHHHHhCCCCCC
Confidence 9999999999999999999 9999999999999999999999999999999984 589999999999999999999999
Q ss_pred CeEEEecCCCcccHHHHHHhhhC----CCEEEEecCCCCChHHHHhcC
Q psy7981 171 TNAVVLGRSKIVGTPAAELLKWK----HATVTVCHSKTKNIQDVVKSP 214 (216)
Q Consensus 171 k~vvViGrS~~VG~Pla~lL~~~----~ATVtichs~T~~l~~~~k~a 214 (216)
|+|||||||++||+|+++||+++ |||||+|||+|+||++++++|
T Consensus 158 K~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~T~nl~~~~~~A 205 (293)
T PRK14185 158 KKCVVLGRSNIVGKPMAQLMMQKAYPGDCTVTVCHSRSKNLKKECLEA 205 (293)
T ss_pred CEEEEECCCccchHHHHHHHHcCCCCCCCEEEEecCCCCCHHHHHhhC
Confidence 99999999999999999999998 899999999999999999997
No 21
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=100.00 E-value=1.4e-71 Score=491.67 Aligned_cols=200 Identities=39% Similarity=0.725 Sum_probs=194.5
Q ss_pred hhcccHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcchHHHHHHHHHHHHHcCcceEEEeCCCCCCHHHHHHH
Q psy7981 11 QILSGTAVSGDIREGLKERVKKLKERLPDFEPGLAIVQVGGREDSNVYIRMKMKAAKEIGIDAQHVKLPRSITEIELLSR 90 (216)
Q Consensus 11 ~il~Gk~vA~~i~~~ik~~v~~l~~~~~~~~P~LaiI~vg~~~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~ 90 (216)
++||||++|++|+++++++++.|++. .|++|+|++|++|+||+|..|+++|.|+|+++||+++.++||++++|+++++.
T Consensus 2 ~ildGk~iA~~i~~~l~~~v~~l~~~-~g~~P~Laii~vgdd~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~~l~~~ 80 (281)
T PRK14183 2 QILDGKALSDKIKENVKKEVDELKLV-KNIVPGLAVILVGDDPASHTYVKMKAKACDRVGIYSITHEMPSTISQKEILET 80 (281)
T ss_pred eeeehHHHHHHHHHHHHHHHHHHHhc-CCCCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHH
Confidence 58999999999999999999999852 27999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCccEEEEeCCCCCCCCCCHHHHhhhcCCCCCcccCCccchhHhhcCCCCCcccCCHHHHHHHHHHhCCCCCC
Q psy7981 91 LKKLNEDPSVHGIIVQMPLDSDNDINAMLVTDSVSPEKDVDGLNTINEGRVAIGDMNGFIPCTPNGVLELIKRTNVTIAG 170 (216)
Q Consensus 91 I~~lN~D~~V~GIlvqlPL~~P~~id~~~i~~~I~p~KDVDG~~~~n~G~l~~~~~~~~~PcTa~av~~lL~~~~i~l~G 170 (216)
|++||+|++|||||||+|| |+|+|+++++++|+|+||||||||+|+|+++.|. .+|+||||+||++||++|+++++|
T Consensus 81 I~~lN~D~~V~GIlvq~Pl--P~~i~~~~i~~~I~p~KDVDGl~~~n~g~l~~g~-~~~~PcTp~avi~lL~~~~i~l~G 157 (281)
T PRK14183 81 IAMMNNNPNIDGILVQLPL--PKHIDTTKILEAIDPKKDVDGFHPYNVGRLVTGL-DGFVPCTPLGVMELLEEYEIDVKG 157 (281)
T ss_pred HHHHhCCCccCeEEEeCCC--CCCCCHHHHHhccCchhcccccChhhhhHHhcCC-CCCCCCcHHHHHHHHHHcCCCCCC
Confidence 9999999999999999999 9999999999999999999999999999999994 489999999999999999999999
Q ss_pred CeEEEecCCCcccHHHHHHhhhCCCEEEEecCCCCChHHHHhcC
Q psy7981 171 TNAVVLGRSKIVGTPAAELLKWKHATVTVCHSKTKNIQDVVKSP 214 (216)
Q Consensus 171 k~vvViGrS~~VG~Pla~lL~~~~ATVtichs~T~~l~~~~k~a 214 (216)
|+|||||||++||+|+++||+++|||||+|||+|+||++++++|
T Consensus 158 k~vvViGrS~~VG~Pla~lL~~~~AtVti~hs~T~~l~~~~~~A 201 (281)
T PRK14183 158 KDVCVVGASNIVGKPMAALLLNANATVDICHIFTKDLKAHTKKA 201 (281)
T ss_pred CEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCCcCHHHHHhhC
Confidence 99999999999999999999999999999999999999999987
No 22
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=100.00 E-value=1.6e-71 Score=492.55 Aligned_cols=196 Identities=39% Similarity=0.764 Sum_probs=191.3
Q ss_pred hcccHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcchHHHHHHHHHHHHHcCcceEEEeCCCCCCHHHHHHHH
Q psy7981 12 ILSGTAVSGDIREGLKERVKKLKERLPDFEPGLAIVQVGGREDSNVYIRMKMKAAKEIGIDAQHVKLPRSITEIELLSRL 91 (216)
Q Consensus 12 il~Gk~vA~~i~~~ik~~v~~l~~~~~~~~P~LaiI~vg~~~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I 91 (216)
+||||++|++++++++++++.| +++|+|++|++|+||+|..|+++|+|+|+++||+++.++||++++|+|+++.|
T Consensus 2 ildGk~iA~~i~~~~k~~v~~l-----~~~P~LaiI~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~t~~el~~~I 76 (287)
T PRK14181 2 LLKGAPAAEHILATIKENISAS-----STAPGLAVVLIGNDPASEVYVGMKVKKATDLGMVSKAHRLPSDATLSDILKLI 76 (287)
T ss_pred eeeHHHHHHHHHHHHHHHHHHh-----CCCCcEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHH
Confidence 7999999999999999999987 57899999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCccEEEEeCCCCCCCCCCHHHHhhhcCCCCCcccCCccchhHhhcCCCCCcccCCHHHHHHHHHHhCCCCCCC
Q psy7981 92 KKLNEDPSVHGIIVQMPLDSDNDINAMLVTDSVSPEKDVDGLNTINEGRVAIGDMNGFIPCTPNGVLELIKRTNVTIAGT 171 (216)
Q Consensus 92 ~~lN~D~~V~GIlvqlPL~~P~~id~~~i~~~I~p~KDVDG~~~~n~G~l~~~~~~~~~PcTa~av~~lL~~~~i~l~Gk 171 (216)
++||+|++|||||||+|| |+|+|+++++++|+|+||||||||+|+|+|+.|+..+|+||||+||++||++|+++++||
T Consensus 77 ~~lN~d~~V~GIlvqlPl--P~~i~~~~i~~~I~p~KDVDGl~p~n~g~l~~g~~~~~~PcTp~avi~lL~~~~i~l~Gk 154 (287)
T PRK14181 77 HRLNNDPNIHGILVQLPL--PKHLDAQAILQAISPDKDVDGLHPVNMGKLLLGETDGFIPCTPAGIIELLKYYEIPLHGR 154 (287)
T ss_pred HHHhCCCCCCeEEEcCCC--CCCcCHHHHHhccCcccCcccCChhhHHHHhcCCCCCCCCCCHHHHHHHHHHhCCCCCCC
Confidence 999999999999999999 999999999999999999999999999999999633899999999999999999999999
Q ss_pred eEEEecCCCcccHHHHHHhhhC----CCEEEEecCCCCChHHHHhcC
Q psy7981 172 NAVVLGRSKIVGTPAAELLKWK----HATVTVCHSKTKNIQDVVKSP 214 (216)
Q Consensus 172 ~vvViGrS~~VG~Pla~lL~~~----~ATVtichs~T~~l~~~~k~a 214 (216)
+|||||||++||+|+++||+++ |||||+|||+|+||++++++|
T Consensus 155 ~vvViGrS~iVGkPla~lL~~~~~~~~AtVtvchs~T~~l~~~~~~A 201 (287)
T PRK14181 155 HVAIVGRSNIVGKPLAALLMQKHPDTNATVTLLHSQSENLTEILKTA 201 (287)
T ss_pred EEEEECCCccchHHHHHHHHhCcCCCCCEEEEeCCCCCCHHHHHhhC
Confidence 9999999999999999999999 999999999999999999987
No 23
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=100.00 E-value=1.5e-71 Score=492.54 Aligned_cols=203 Identities=38% Similarity=0.634 Sum_probs=196.4
Q ss_pred hhhhhcccHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcchHHHHHHHHHHHHHcCcceEEEeCCCCCCHHHH
Q psy7981 8 QQAQILSGTAVSGDIREGLKERVKKLKERLPDFEPGLAIVQVGGREDSNVYIRMKMKAAKEIGIDAQHVKLPRSITEIEL 87 (216)
Q Consensus 8 ~~a~il~Gk~vA~~i~~~ik~~v~~l~~~~~~~~P~LaiI~vg~~~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el 87 (216)
|++++|||+++|++++++++++++.|+++ ++++|+|++|+||+||+|..|+++|+|+|+++||+++.++||++++|+||
T Consensus 1 M~~~ildGk~va~~i~~~lk~~v~~l~~~-~~~~P~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~s~~el 79 (285)
T PRK10792 1 MTAKIIDGKTIAQQVRSEVAQKVQARVAA-GLRAPGLAVVLVGSDPASQVYVASKRKACEEVGFVSRSYDLPETTSEAEL 79 (285)
T ss_pred CCCeEeeHHHHHHHHHHHHHHHHHHHHHc-CCCCceEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHH
Confidence 45679999999999999999999999854 36889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCccEEEEeCCCCCCCCCCHHHHhhhcCCCCCcccCCccchhHhhcCCCCCcccCCHHHHHHHHHHhCCC
Q psy7981 88 LSRLKKLNEDPSVHGIIVQMPLDSDNDINAMLVTDSVSPEKDVDGLNTINEGRVAIGDMNGFIPCTPNGVLELIKRTNVT 167 (216)
Q Consensus 88 ~~~I~~lN~D~~V~GIlvqlPL~~P~~id~~~i~~~I~p~KDVDG~~~~n~G~l~~~~~~~~~PcTa~av~~lL~~~~i~ 167 (216)
++.|++||+|++|||||||+|| |+|+|+++++++|+|+||||||||.|+|+|+.|+ ..|+||||+||+++|++|+++
T Consensus 80 ~~~I~~lN~d~~V~GIlvqlPL--P~~~~~~~i~~~I~p~KDVDGl~~~n~g~l~~~~-~~~~PcTp~av~~ll~~~~i~ 156 (285)
T PRK10792 80 LALIDELNADPTIDGILVQLPL--PAHIDNVKVLERIHPDKDVDGFHPYNVGRLAQRI-PLLRPCTPRGIMTLLERYGID 156 (285)
T ss_pred HHHHHHHhCCCCCCEEEEeCCC--CCCCCHHHHHhccCcccccCccChhhHhHHhCCC-CCCCCCCHHHHHHHHHHcCCC
Confidence 9999999999999999999999 9999999999999999999999999999999984 489999999999999999999
Q ss_pred CCCCeEEEecCCCcccHHHHHHhhhCCCEEEEecCCCCChHHHHhcC
Q psy7981 168 IAGTNAVVLGRSKIVGTPAAELLKWKHATVTVCHSKTKNIQDVVKSP 214 (216)
Q Consensus 168 l~Gk~vvViGrS~~VG~Pla~lL~~~~ATVtichs~T~~l~~~~k~a 214 (216)
++||+|||||||++||+|+++||+++|||||+|||+|+||++++++|
T Consensus 157 l~Gk~vvViGrs~iVG~Pla~lL~~~~atVtv~hs~T~~l~~~~~~A 203 (285)
T PRK10792 157 TYGLNAVVVGASNIVGRPMSLELLLAGCTVTVCHRFTKNLRHHVRNA 203 (285)
T ss_pred CCCCEEEEECCCcccHHHHHHHHHHCCCeEEEEECCCCCHHHHHhhC
Confidence 99999999999999999999999999999999999999999999987
No 24
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=100.00 E-value=2.1e-71 Score=490.99 Aligned_cols=201 Identities=37% Similarity=0.635 Sum_probs=194.7
Q ss_pred hhcccHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcchHHHHHHHHHHHHHcCcceEEEeCCCCCCHHHHHHH
Q psy7981 11 QILSGTAVSGDIREGLKERVKKLKERLPDFEPGLAIVQVGGREDSNVYIRMKMKAAKEIGIDAQHVKLPRSITEIELLSR 90 (216)
Q Consensus 11 ~il~Gk~vA~~i~~~ik~~v~~l~~~~~~~~P~LaiI~vg~~~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~ 90 (216)
.+||||++|++|+++++++++.|+++ .|++|+|++|++|+||+|..|+++|.|+|+++||+++.++||++++|+|+++.
T Consensus 2 ~ildGk~va~~i~~~lk~~v~~~~~~-~g~~P~La~I~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~ 80 (282)
T PRK14180 2 ILIDGKSLSKDLKERLATQVQEYKHH-TAITPKLVAIIVGNDPASKTYVASKEKACAQVGIDSQVITLPEHTTESELLEL 80 (282)
T ss_pred ceeeHHHHHHHHHHHHHHHHHHHHhc-cCCCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHH
Confidence 47999999999999999999999853 37899999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCccEEEEeCCCCCCCCCCHHHHhhhcCCCCCcccCCccchhHhhcCCCCCcccCCHHHHHHHHHHhCCCCCC
Q psy7981 91 LKKLNEDPSVHGIIVQMPLDSDNDINAMLVTDSVSPEKDVDGLNTINEGRVAIGDMNGFIPCTPNGVLELIKRTNVTIAG 170 (216)
Q Consensus 91 I~~lN~D~~V~GIlvqlPL~~P~~id~~~i~~~I~p~KDVDG~~~~n~G~l~~~~~~~~~PcTa~av~~lL~~~~i~l~G 170 (216)
|++||+|++|||||||+|| |+|+|++.++++|+|+||||||||.|+|+|+.|+..+|+||||+||++||++|+++++|
T Consensus 81 I~~lN~D~~V~GIivq~Pl--P~~i~~~~i~~~I~p~KDVDGl~~~n~g~l~~g~~~~~~PcTp~aii~lL~~y~i~l~G 158 (282)
T PRK14180 81 IDQLNNDSSVHAILVQLPL--PAHINKNNVIYSIKPEKDVDGFHPTNVGRLQLRDKKCLESCTPKGIMTMLREYGIKTEG 158 (282)
T ss_pred HHHHhCCCCCCeEEEcCCC--CCCCCHHHHHhhcCccccccccChhhHHHHhcCCCCCcCCCCHHHHHHHHHHhCCCCCC
Confidence 9999999999999999999 99999999999999999999999999999999942489999999999999999999999
Q ss_pred CeEEEecCCCcccHHHHHHhhhCCCEEEEecCCCCChHHHHhcC
Q psy7981 171 TNAVVLGRSKIVGTPAAELLKWKHATVTVCHSKTKNIQDVVKSP 214 (216)
Q Consensus 171 k~vvViGrS~~VG~Pla~lL~~~~ATVtichs~T~~l~~~~k~a 214 (216)
|+|||||||++||+|+++||+++|||||+|||+|+||++++|+|
T Consensus 159 k~vvViGrS~~VGkPla~lL~~~~ATVt~chs~T~dl~~~~k~A 202 (282)
T PRK14180 159 AYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFTTDLKSHTTKA 202 (282)
T ss_pred CEEEEECCCCcchHHHHHHHHHCCCEEEEEcCCCCCHHHHhhhc
Confidence 99999999999999999999999999999999999999999997
No 25
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=100.00 E-value=4e-71 Score=490.11 Aligned_cols=200 Identities=41% Similarity=0.696 Sum_probs=194.4
Q ss_pred hhcccHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcchHHHHHHHHHHHHHcCcceEEEeCCCCCCHHHHHHH
Q psy7981 11 QILSGTAVSGDIREGLKERVKKLKERLPDFEPGLAIVQVGGREDSNVYIRMKMKAAKEIGIDAQHVKLPRSITEIELLSR 90 (216)
Q Consensus 11 ~il~Gk~vA~~i~~~ik~~v~~l~~~~~~~~P~LaiI~vg~~~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~ 90 (216)
++||||++|++|+++++++++.|+++ .|++|+|++|++|+||+|..|+++|.|+|+++||+++.++||++++|+|+++.
T Consensus 2 ~ildGk~iA~~i~~~l~~~v~~l~~~-~g~~P~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~~l~~~ 80 (286)
T PRK14184 2 LLLDGKATAATIREELKTEVAALTAR-HGRAPGLAVILVGEDPASQVYVRNKERACEDAGIVSEAFRLPADTTQEELEDL 80 (286)
T ss_pred eeeeHHHHHHHHHHHHHHHHHHHHhc-cCCCCEEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHH
Confidence 57999999999999999999999854 37899999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCccEEEEeCCCCCCCCCCHHHHhhhcCCCCCcccCCccchhHhhcCCCCCcccCCHHHHHHHHHHhCCCCCC
Q psy7981 91 LKKLNEDPSVHGIIVQMPLDSDNDINAMLVTDSVSPEKDVDGLNTINEGRVAIGDMNGFIPCTPNGVLELIKRTNVTIAG 170 (216)
Q Consensus 91 I~~lN~D~~V~GIlvqlPL~~P~~id~~~i~~~I~p~KDVDG~~~~n~G~l~~~~~~~~~PcTa~av~~lL~~~~i~l~G 170 (216)
|++||+|++|||||||+|| |+|+|+++++++|+|+||||||||.|+|+|+.|. ..|+||||+||++||++|+++++|
T Consensus 81 I~~lN~d~~V~GIlvqlPL--P~~id~~~i~~~I~p~KDVDGl~~~N~g~l~~~~-~~~~PcTp~av~~lL~~~~i~l~G 157 (286)
T PRK14184 81 IAELNARPDIDGILLQLPL--PKGLDSQRCLELIDPAKDVDGFHPENMGRLALGL-PGFRPCTPAGVMTLLERYGLSPAG 157 (286)
T ss_pred HHHHhCCCcCceEEEecCC--CCCCCHHHHHhccCcccCcccCCHhhHHHHhCCC-CCCCCCCHHHHHHHHHHhCCCCCC
Confidence 9999999999999999999 9999999999999999999999999999999984 489999999999999999999999
Q ss_pred CeEEEecCCCcccHHHHHHhhh----CCCEEEEecCCCCChHHHHhcC
Q psy7981 171 TNAVVLGRSKIVGTPAAELLKW----KHATVTVCHSKTKNIQDVVKSP 214 (216)
Q Consensus 171 k~vvViGrS~~VG~Pla~lL~~----~~ATVtichs~T~~l~~~~k~a 214 (216)
|+|||||||++||+|+++||++ +|||||+|||+|+||++++++|
T Consensus 158 k~vvViGrS~iVG~Pla~lL~~~~~~~~AtVt~~hs~t~~l~~~~~~A 205 (286)
T PRK14184 158 KKAVVVGRSNIVGKPLALMLGAPGKFANATVTVCHSRTPDLAEECREA 205 (286)
T ss_pred CEEEEECCCccchHHHHHHHhCCcccCCCEEEEEeCCchhHHHHHHhC
Confidence 9999999999999999999999 9999999999999999999987
No 26
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=100.00 E-value=5.7e-71 Score=489.15 Aligned_cols=202 Identities=41% Similarity=0.737 Sum_probs=196.3
Q ss_pred hhhhhcccHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcchHHHHHHHHHHHHHcCcceEEEeCCCCCCHHHH
Q psy7981 8 QQAQILSGTAVSGDIREGLKERVKKLKERLPDFEPGLAIVQVGGREDSNVYIRMKMKAAKEIGIDAQHVKLPRSITEIEL 87 (216)
Q Consensus 8 ~~a~il~Gk~vA~~i~~~ik~~v~~l~~~~~~~~P~LaiI~vg~~~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el 87 (216)
|++++||||++|++|+++++++++.|+++ |++|+|++|++|+||+|..|+++|+|+|+++||+++.++||++++|+|+
T Consensus 1 M~~~ildGk~va~~i~~~lk~~i~~l~~~--g~~p~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~~l 78 (285)
T PRK14189 1 MTAQLIDGNALSKQLRAEAAQRAAALTAR--GHQPGLAVILVGDNPASQVYVRNKVKACEDNGFHSLKDRYPADLSEAEL 78 (285)
T ss_pred CCCeEeeHHHHHHHHHHHHHHHHHHHHhC--CCCCeEEEEEeCCCchHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHH
Confidence 45678999999999999999999999854 7899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCccEEEEeCCCCCCCCCCHHHHhhhcCCCCCcccCCccchhHhhcCCCCCcccCCHHHHHHHHHHhCCC
Q psy7981 88 LSRLKKLNEDPSVHGIIVQMPLDSDNDINAMLVTDSVSPEKDVDGLNTINEGRVAIGDMNGFIPCTPNGVLELIKRTNVT 167 (216)
Q Consensus 88 ~~~I~~lN~D~~V~GIlvqlPL~~P~~id~~~i~~~I~p~KDVDG~~~~n~G~l~~~~~~~~~PcTa~av~~lL~~~~i~ 167 (216)
++.|++||+|++|||||||+|| |+|+|+++++++|+|+||||||||.|+|+|+.|+ ..|+||||+||++||++|+++
T Consensus 79 ~~~I~~lN~d~~V~GIlvq~Pl--p~~i~~~~i~~~I~p~KDVDGl~~~n~g~l~~~~-~~~~PcTp~aii~lL~~~~i~ 155 (285)
T PRK14189 79 LARIDELNRDPKIHGILVQLPL--PKHIDSHKVIEAIAPEKDVDGFHVANAGALMTGQ-PLFRPCTPYGVMKMLESIGIP 155 (285)
T ss_pred HHHHHHHcCCCCCCeEEEeCCC--CCCCCHHHHHhhcCcccCcccCChhhhhHhhCCC-CCCcCCCHHHHHHHHHHcCCC
Confidence 9999999999999999999999 9999999999999999999999999999999984 489999999999999999999
Q ss_pred CCCCeEEEecCCCcccHHHHHHhhhCCCEEEEecCCCCChHHHHhcC
Q psy7981 168 IAGTNAVVLGRSKIVGTPAAELLKWKHATVTVCHSKTKNIQDVVKSP 214 (216)
Q Consensus 168 l~Gk~vvViGrS~~VG~Pla~lL~~~~ATVtichs~T~~l~~~~k~a 214 (216)
++||+|||||||.+||+|+++||+++|||||+|||+|+||++++++|
T Consensus 156 l~Gk~vvViGrs~iVGkPla~lL~~~~atVt~~hs~t~~l~~~~~~A 202 (285)
T PRK14189 156 LRGAHAVVIGRSNIVGKPMAMLLLQAGATVTICHSKTRDLAAHTRQA 202 (285)
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHCCCEEEEecCCCCCHHHHhhhC
Confidence 99999999999999999999999999999999999999999999987
No 27
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=100.00 E-value=3e-70 Score=484.32 Aligned_cols=200 Identities=38% Similarity=0.658 Sum_probs=194.7
Q ss_pred hhcccHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcchHHHHHHHHHHHHHcCcceEEEeCCCCCCHHHHHHH
Q psy7981 11 QILSGTAVSGDIREGLKERVKKLKERLPDFEPGLAIVQVGGREDSNVYIRMKMKAAKEIGIDAQHVKLPRSITEIELLSR 90 (216)
Q Consensus 11 ~il~Gk~vA~~i~~~ik~~v~~l~~~~~~~~P~LaiI~vg~~~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~ 90 (216)
++||||++|++|+++++++++.|+++ .|++|+|++|++|+|++|..|+++|+|+|+++||+++.++||++++|+|+++.
T Consensus 2 ~il~Gk~~A~~i~~~l~~~v~~l~~~-~g~~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~ 80 (285)
T PRK14191 2 VLLDGKALSYKIEKDLKNKIQILTAQ-TGKRPKLAVILVGKDPASQTYVNMKIKACERVGMDSDLHTLQENTTEAELLSL 80 (285)
T ss_pred eeeehHHHHHHHHHHHHHHHHHHHhc-CCCCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHH
Confidence 57999999999999999999999854 37999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCccEEEEeCCCCCCCCCCHHHHhhhcCCCCCcccCCccchhHhhcCCCCCcccCCHHHHHHHHHHhCCCCCC
Q psy7981 91 LKKLNEDPSVHGIIVQMPLDSDNDINAMLVTDSVSPEKDVDGLNTINEGRVAIGDMNGFIPCTPNGVLELIKRTNVTIAG 170 (216)
Q Consensus 91 I~~lN~D~~V~GIlvqlPL~~P~~id~~~i~~~I~p~KDVDG~~~~n~G~l~~~~~~~~~PcTa~av~~lL~~~~i~l~G 170 (216)
|++||+|++|||||||+|| |+|+|++.++++|+|+||||||||.|+|+|+.|. .+|+||||+||++||++|+++++|
T Consensus 81 I~~lN~D~~V~GIlvq~Pl--P~~i~~~~i~~~I~p~KDVDGl~~~n~g~l~~g~-~~~~PcTp~avi~lL~~~~i~l~G 157 (285)
T PRK14191 81 IKDLNTDQNIDGILVQLPL--PRHIDTKMVLEAIDPNKDVDGFHPLNIGKLCSQL-DGFVPATPMGVMRLLKHYHIEIKG 157 (285)
T ss_pred HHHHhCCCCCCEEEEeCCC--CCCCCHHHHHhcCCccccccccChhhHHHHhcCC-CCCCCCcHHHHHHHHHHhCCCCCC
Confidence 9999999999999999999 9999999999999999999999999999999994 489999999999999999999999
Q ss_pred CeEEEecCCCcccHHHHHHhhhCCCEEEEecCCCCChHHHHhcC
Q psy7981 171 TNAVVLGRSKIVGTPAAELLKWKHATVTVCHSKTKNIQDVVKSP 214 (216)
Q Consensus 171 k~vvViGrS~~VG~Pla~lL~~~~ATVtichs~T~~l~~~~k~a 214 (216)
|+|+|||||++||+|+|+||+++|||||+|||+|+||++++++|
T Consensus 158 k~vvVvGrs~~VG~Pla~lL~~~gAtVtv~hs~t~~l~~~~~~A 201 (285)
T PRK14191 158 KDVVIIGASNIVGKPLAMLMLNAGASVSVCHILTKDLSFYTQNA 201 (285)
T ss_pred CEEEEECCCchhHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999987
No 28
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=100.00 E-value=1.1e-69 Score=481.23 Aligned_cols=202 Identities=42% Similarity=0.759 Sum_probs=196.5
Q ss_pred hhhhhcccHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcchHHHHHHHHHHHHHcCcceEEEeCCCCCCHHHH
Q psy7981 8 QQAQILSGTAVSGDIREGLKERVKKLKERLPDFEPGLAIVQVGGREDSNVYIRMKMKAAKEIGIDAQHVKLPRSITEIEL 87 (216)
Q Consensus 8 ~~a~il~Gk~vA~~i~~~ik~~v~~l~~~~~~~~P~LaiI~vg~~~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el 87 (216)
||+++||||++|++++++++++++.|++. |++|+|++|++|+||+|..|+++|.|+|+++||+++.++||++++|+|+
T Consensus 1 m~~~il~Gk~ia~~i~~~~~~~v~~l~~~--g~~p~Laii~vg~~~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~~l 78 (286)
T PRK14175 1 MVAKILDGKQIAKDYRQGLQDQVEALKEK--GFTPKLSVILVGNDGASQSYVRSKKKAAEKIGMISEIVHLEETATEEEV 78 (286)
T ss_pred CCCeEeeHHHHHHHHHHHHHHHHHHHHhc--CCCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHH
Confidence 55779999999999999999999999854 7999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCccEEEEeCCCCCCCCCCHHHHhhhcCCCCCcccCCccchhHhhcCCCCCcccCCHHHHHHHHHHhCCC
Q psy7981 88 LSRLKKLNEDPSVHGIIVQMPLDSDNDINAMLVTDSVSPEKDVDGLNTINEGRVAIGDMNGFIPCTPNGVLELIKRTNVT 167 (216)
Q Consensus 88 ~~~I~~lN~D~~V~GIlvqlPL~~P~~id~~~i~~~I~p~KDVDG~~~~n~G~l~~~~~~~~~PcTa~av~~lL~~~~i~ 167 (216)
++.|++||+|++|||||||+|| |+|+|+++++++|+|+||||||||.|+|+|+.|+ ..|+||||+||++||++|+++
T Consensus 79 ~~~I~~lN~d~~V~GIivq~Pl--p~~i~~~~i~~~I~p~KDVDGl~~~n~g~l~~~~-~~~~PcTp~ai~~ll~~~~i~ 155 (286)
T PRK14175 79 LNELNRLNNDDSVSGILVQVPL--PKQVSEQKILEAINPEKDVDGFHPINIGKLYIDE-QTFVPCTPLGIMEILKHADID 155 (286)
T ss_pred HHHHHHHhCCCCCCEEEEeCCC--CCCCCHHHHHhccCcccCcccCCccchHhHhcCC-CCCCCCcHHHHHHHHHHcCCC
Confidence 9999999999999999999999 9999999999999999999999999999999994 489999999999999999999
Q ss_pred CCCCeEEEecCCCcccHHHHHHhhhCCCEEEEecCCCCChHHHHhcC
Q psy7981 168 IAGTNAVVLGRSKIVGTPAAELLKWKHATVTVCHSKTKNIQDVVKSP 214 (216)
Q Consensus 168 l~Gk~vvViGrS~~VG~Pla~lL~~~~ATVtichs~T~~l~~~~k~a 214 (216)
++||+|+|||||.+||+|++.||+++|||||+|||+|+||++++++|
T Consensus 156 l~Gk~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t~~l~~~~~~A 202 (286)
T PRK14175 156 LEGKNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRSKDMASYLKDA 202 (286)
T ss_pred CCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCchhHHHHHhhC
Confidence 99999999999999999999999999999999999999999999987
No 29
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=100.00 E-value=2e-69 Score=479.12 Aligned_cols=202 Identities=41% Similarity=0.725 Sum_probs=195.9
Q ss_pred hhhhcccHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcchHHHHHHHHHHHHHcCcceEEEeCCCCCCHHHHH
Q psy7981 9 QAQILSGTAVSGDIREGLKERVKKLKERLPDFEPGLAIVQVGGREDSNVYIRMKMKAAKEIGIDAQHVKLPRSITEIELL 88 (216)
Q Consensus 9 ~a~il~Gk~vA~~i~~~ik~~v~~l~~~~~~~~P~LaiI~vg~~~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~ 88 (216)
|+++||||++|++++++++++++.|+++ .|++|+|++|++|+||+|..|+++|+|+|+++||+++.++||++++|+|++
T Consensus 1 ~~~ildGk~ia~~i~~~lk~~v~~l~~~-~g~~P~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~~l~ 79 (284)
T PRK14179 1 MTEIIDGKALAQKMQAELAEKVAKLKEE-KGIVPGLVVILVGDNPASQVYVRNKERSALAAGFKSEVVRLPETISQEELL 79 (284)
T ss_pred CCeEEEhHHHHHHHHHHHHHHHHHHHhc-cCCCceEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHH
Confidence 4678999999999999999999999853 378999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCccEEEEeCCCCCCCCCCHHHHhhhcCCCCCcccCCccchhHhhcCCCCCcccCCHHHHHHHHHHhCCCC
Q psy7981 89 SRLKKLNEDPSVHGIIVQMPLDSDNDINAMLVTDSVSPEKDVDGLNTINEGRVAIGDMNGFIPCTPNGVLELIKRTNVTI 168 (216)
Q Consensus 89 ~~I~~lN~D~~V~GIlvqlPL~~P~~id~~~i~~~I~p~KDVDG~~~~n~G~l~~~~~~~~~PcTa~av~~lL~~~~i~l 168 (216)
+.|++||+|++|||||||+|| |+|+|++.++++|+|+||||||||+|+|+|+.|+ .+|+||||+||++||++|++++
T Consensus 80 ~~I~~lN~d~~V~GIivqlPl--p~~i~~~~i~~~I~p~KDVDGl~~~N~g~l~~~~-~~~~PcTp~avi~lL~~~~i~l 156 (284)
T PRK14179 80 DLIERYNQDPTWHGILVQLPL--PKHINEEKILLAIDPKKDVDGFHPMNTGHLWSGR-PVMIPCTPAGIMEMFREYNVEL 156 (284)
T ss_pred HHHHHHhCCCCCCEEEEcCCC--CCCCCHHHHHhccCccccccccCHhhHHHHhCCC-CCCcCCCHHHHHHHHHHhCCCC
Confidence 999999999999999999999 9999999999999999999999999999999984 4899999999999999999999
Q ss_pred CCCeEEEecCCCcccHHHHHHhhhCCCEEEEecCCCCChHHHHhcC
Q psy7981 169 AGTNAVVLGRSKIVGTPAAELLKWKHATVTVCHSKTKNIQDVVKSP 214 (216)
Q Consensus 169 ~Gk~vvViGrS~~VG~Pla~lL~~~~ATVtichs~T~~l~~~~k~a 214 (216)
+||+|+|||||.+||+|+|+||+++|||||+|||+|+++++++++|
T Consensus 157 ~Gk~v~vIG~S~ivG~Pla~lL~~~gatVtv~~s~t~~l~~~~~~A 202 (284)
T PRK14179 157 EGKHAVVIGRSNIVGKPMAQLLLDKNATVTLTHSRTRNLAEVARKA 202 (284)
T ss_pred CCCEEEEECCCCcCcHHHHHHHHHCCCEEEEECCCCCCHHHHHhhC
Confidence 9999999999999999999999999999999999999999999987
No 30
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=100.00 E-value=1.1e-68 Score=476.61 Aligned_cols=201 Identities=43% Similarity=0.749 Sum_probs=194.0
Q ss_pred hhcccHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcchHHHHHHHHHHHHHcCcceEEEeCCCCCCHHHHHHH
Q psy7981 11 QILSGTAVSGDIREGLKERVKKLKERLPDFEPGLAIVQVGGREDSNVYIRMKMKAAKEIGIDAQHVKLPRSITEIELLSR 90 (216)
Q Consensus 11 ~il~Gk~vA~~i~~~ik~~v~~l~~~~~~~~P~LaiI~vg~~~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~ 90 (216)
.+|||+++|++|+++++++++.|+++ .|++|+|++|++|+||+|..|+++|.|+|+++||++++++||++++|+|+++.
T Consensus 2 ~il~Gk~iA~~i~~~i~~~v~~l~~~-~g~~P~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~ 80 (295)
T PRK14174 2 LIIDGKKVSLDLKNELKTRVEAYRAK-TGKVPGLTVIIVGEDPASQVYVRNKAKSCKEIGMNSTVIELPADTTEEHLLKK 80 (295)
T ss_pred EEEeHHHHHHHHHHHHHHHHHHHHHc-cCCCCeEEEEEeCCChHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHH
Confidence 37999999999999999999999854 47899999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCccEEEEeCCCCCCCCCCHHHHhhhcCCCCCcccCCccchhHhhcCCC-CCcccCCHHHHHHHHHHhCCCCC
Q psy7981 91 LKKLNEDPSVHGIIVQMPLDSDNDINAMLVTDSVSPEKDVDGLNTINEGRVAIGDM-NGFIPCTPNGVLELIKRTNVTIA 169 (216)
Q Consensus 91 I~~lN~D~~V~GIlvqlPL~~P~~id~~~i~~~I~p~KDVDG~~~~n~G~l~~~~~-~~~~PcTa~av~~lL~~~~i~l~ 169 (216)
|++||+|++|||||||+|| |+|+|++.++++|+|+||||||||.|+|+|+.|+. .+|+||||+||++||++|+++++
T Consensus 81 I~~lN~D~~V~GIlvq~Pl--p~~id~~~i~~~I~p~KDVDGl~~~n~g~l~~~~~~~~~~PcTp~ail~ll~~y~i~l~ 158 (295)
T PRK14174 81 IEDLNNDPDVHGILVQQPL--PKQIDEFAVTLAIDPAKDVDGFHPENLGRLVMGHLDKCFVSCTPYGILELLGRYNIETK 158 (295)
T ss_pred HHHHhCCCCCCEEEEeCCC--CCCCCHHHHHhcCCccccccccChhhHHHHhcCCCCCCcCCCCHHHHHHHHHHhCCCCC
Confidence 9999999999999999999 99999999999999999999999999999999863 38999999999999999999999
Q ss_pred CCeEEEecCCCcccHHHHHHhhh----CCCEEEEecCCCCChHHHHhcC
Q psy7981 170 GTNAVVLGRSKIVGTPAAELLKW----KHATVTVCHSKTKNIQDVVKSP 214 (216)
Q Consensus 170 Gk~vvViGrS~~VG~Pla~lL~~----~~ATVtichs~T~~l~~~~k~a 214 (216)
||+|||||||++||+|+++||++ +|||||+|||+|+||++++++|
T Consensus 159 Gk~vvViGrS~iVG~Pla~lL~~~~~~~~atVt~~hs~t~~l~~~~~~A 207 (295)
T PRK14174 159 GKHCVVVGRSNIVGKPMANLMLQKLKESNCTVTICHSATKDIPSYTRQA 207 (295)
T ss_pred CCEEEEECCCCcchHHHHHHHHhccccCCCEEEEEeCCchhHHHHHHhC
Confidence 99999999999999999999998 7999999999999999999987
No 31
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=100.00 E-value=1.5e-68 Score=476.64 Aligned_cols=202 Identities=38% Similarity=0.659 Sum_probs=196.5
Q ss_pred hhhhhcccHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcchHHHHHHHHHHHHHcCcceEEEeCCCCCCHHHH
Q psy7981 8 QQAQILSGTAVSGDIREGLKERVKKLKERLPDFEPGLAIVQVGGREDSNVYIRMKMKAAKEIGIDAQHVKLPRSITEIEL 87 (216)
Q Consensus 8 ~~a~il~Gk~vA~~i~~~ik~~v~~l~~~~~~~~P~LaiI~vg~~~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el 87 (216)
||+++||||++|++|+++++++++.|+++ |++|+|++|++|+||+|..|+++|+|+|+++||+++.++||++++|+|+
T Consensus 2 m~~~il~Gk~iA~~i~~~lk~~i~~l~~~--g~~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~t~~~l 79 (301)
T PRK14194 2 MSAKLIDGKAAAARVLAQVREDVRTLKAA--GIEPALAVILVGNDPASQVYVRNKILRAEEAGIRSLEHRLPADTSQARL 79 (301)
T ss_pred CCCeEeeHHHHHHHHHHHHHHHHHHHHhC--CCCCeEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHH
Confidence 55779999999999999999999999864 7999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCccEEEEeCCCCCCCCCCHHHHhhhcCCCCCcccCCccchhHhhcCCCCCcccCCHHHHHHHHHHhCCC
Q psy7981 88 LSRLKKLNEDPSVHGIIVQMPLDSDNDINAMLVTDSVSPEKDVDGLNTINEGRVAIGDMNGFIPCTPNGVLELIKRTNVT 167 (216)
Q Consensus 88 ~~~I~~lN~D~~V~GIlvqlPL~~P~~id~~~i~~~I~p~KDVDG~~~~n~G~l~~~~~~~~~PcTa~av~~lL~~~~i~ 167 (216)
++.|++||+|++|||||||+|| |+|+|++.++++|+|+||||||||.|+|+|+.|+ .+|+||||+||++||++|+++
T Consensus 80 ~~~I~~lN~D~~V~GIlvqlPL--P~~i~~~~i~~~I~p~KDVDGl~~~N~g~l~~~~-~~~~PcTp~aii~lL~~~~i~ 156 (301)
T PRK14194 80 LALIAELNADPSVNGILLQLPL--PAHIDEARVLQAINPLKDVDGFHSENVGGLSQGR-DVLTPCTPSGCLRLLEDTCGD 156 (301)
T ss_pred HHHHHHHcCCCCCCeEEEeCCC--CCCCCHHHHHhccCchhccCccChhhhhHHhcCC-CCCCCCcHHHHHHHHHHhCCC
Confidence 9999999999999999999999 9999999999999999999999999999999994 489999999999999999999
Q ss_pred CCCCeEEEecCCCcccHHHHHHhhhCCCEEEEecCCCCChHHHHhcC
Q psy7981 168 IAGTNAVVLGRSKIVGTPAAELLKWKHATVTVCHSKTKNIQDVVKSP 214 (216)
Q Consensus 168 l~Gk~vvViGrS~~VG~Pla~lL~~~~ATVtichs~T~~l~~~~k~a 214 (216)
++||+|+|||||.+||+|++.+|+++|||||+||++|+++++++++|
T Consensus 157 l~Gk~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t~~l~e~~~~A 203 (301)
T PRK14194 157 LTGKHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRSTDAKALCRQA 203 (301)
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHCCCEEEEECCCCCCHHHHHhcC
Confidence 99999999999999999999999999999999999999999999987
No 32
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=100.00 E-value=2.8e-68 Score=470.52 Aligned_cols=195 Identities=44% Similarity=0.730 Sum_probs=191.2
Q ss_pred hcccHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcchHHHHHHHHHHHHHcCcceEEEeCCCCCCHHHHHHHH
Q psy7981 12 ILSGTAVSGDIREGLKERVKKLKERLPDFEPGLAIVQVGGREDSNVYIRMKMKAAKEIGIDAQHVKLPRSITEIELLSRL 91 (216)
Q Consensus 12 il~Gk~vA~~i~~~ik~~v~~l~~~~~~~~P~LaiI~vg~~~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I 91 (216)
+||||++|++|++++++++++| |++|+|++|++|+||+|..|+++|+|+|+++||+++.++||++++|+|+++.|
T Consensus 2 il~Gk~~a~~i~~~~~~~v~~l-----g~~P~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I 76 (279)
T PRK14178 2 ILDGKAVSEKRLELLKEEIIES-----GLYPRLATVIVGDDPASQMYVRMKHRACERVGIGSVGIELPGDATTRTVLERI 76 (279)
T ss_pred eeeHHHHHHHHHHHHHHHHHHh-----CCCCeEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHH
Confidence 7999999999999999999987 68999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCccEEEEeCCCCCCCCCCHHHHhhhcCCCCCcccCCccchhHhhcCCCCCcccCCHHHHHHHHHHhCCCCCCC
Q psy7981 92 KKLNEDPSVHGIIVQMPLDSDNDINAMLVTDSVSPEKDVDGLNTINEGRVAIGDMNGFIPCTPNGVLELIKRTNVTIAGT 171 (216)
Q Consensus 92 ~~lN~D~~V~GIlvqlPL~~P~~id~~~i~~~I~p~KDVDG~~~~n~G~l~~~~~~~~~PcTa~av~~lL~~~~i~l~Gk 171 (216)
++||+|++|||||||+|| |+|+|+++++++|+|+||||||||.|+|+|+.|+ ..|+||||+||++||++|+++++||
T Consensus 77 ~~lN~D~~V~GIlvqlPL--p~~i~~~~v~~~I~p~KDVDGl~~~n~g~l~~~~-~~~~PcTp~av~~ll~~~~i~l~Gk 153 (279)
T PRK14178 77 RRLNEDPDINGILVQLPL--PKGVDTERVIAAILPEKDVDGFHPLNLGRLVSGL-PGFAPCTPNGIMTLLHEYKISIAGK 153 (279)
T ss_pred HHHhCCCCCCeEEEcCCC--CCCCCHHHHHhccCcccCcccCChhhHHHHhCCC-CCCCCCCHHHHHHHHHHcCCCCCCC
Confidence 999999999999999999 9999999999999999999999999999999984 4899999999999999999999999
Q ss_pred eEEEecCCCcccHHHHHHhhhCCCEEEEecCCCCChHHHHhcC
Q psy7981 172 NAVVLGRSKIVGTPAAELLKWKHATVTVCHSKTKNIQDVVKSP 214 (216)
Q Consensus 172 ~vvViGrS~~VG~Pla~lL~~~~ATVtichs~T~~l~~~~k~a 214 (216)
+|+|+|||.+||+|+|+||.++|||||+|||+|+||++++++|
T Consensus 154 ~V~ViGrs~~vGrpla~lL~~~~atVtv~hs~t~~L~~~~~~A 196 (279)
T PRK14178 154 RAVVVGRSIDVGRPMAALLLNADATVTICHSKTENLKAELRQA 196 (279)
T ss_pred EEEEECCCccccHHHHHHHHhCCCeeEEEecChhHHHHHHhhC
Confidence 9999999999999999999999999999999999999999987
No 33
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=100.00 E-value=7.2e-67 Score=465.58 Aligned_cols=202 Identities=42% Similarity=0.744 Sum_probs=195.7
Q ss_pred hhhhcccHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcchHHHHHHHHHHHHHcCcceEEEeCCCCCCHHHHH
Q psy7981 9 QAQILSGTAVSGDIREGLKERVKKLKERLPDFEPGLAIVQVGGREDSNVYIRMKMKAAKEIGIDAQHVKLPRSITEIELL 88 (216)
Q Consensus 9 ~a~il~Gk~vA~~i~~~ik~~v~~l~~~~~~~~P~LaiI~vg~~~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~ 88 (216)
|+++|||+++|++|++++|++++.|+++ .|++|+|++|++|+||+|..|+++|.|+|+++||++++++||++++|+|++
T Consensus 1 ~~~il~Gk~~a~~i~~~i~~~v~~l~~~-~g~~p~La~i~vg~~~~s~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~ 79 (296)
T PRK14188 1 MATIIDGKAFAADVRATVAAEVARLKAA-HGVTPGLAVVLVGEDPASQVYVRSKGKQTKEAGMASFEHKLPADTSQAELL 79 (296)
T ss_pred CCEEEEHHHHHHHHHHHHHHHHHHHHHc-cCCCCeEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHH
Confidence 4678999999999999999999999854 378999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCccEEEEeCCCCCCCCCCHHHHhhhcCCCCCcccCCccchhHhhcCCCCCcccCCHHHHHHHHHHhCCCC
Q psy7981 89 SRLKKLNEDPSVHGIIVQMPLDSDNDINAMLVTDSVSPEKDVDGLNTINEGRVAIGDMNGFIPCTPNGVLELIKRTNVTI 168 (216)
Q Consensus 89 ~~I~~lN~D~~V~GIlvqlPL~~P~~id~~~i~~~I~p~KDVDG~~~~n~G~l~~~~~~~~~PcTa~av~~lL~~~~i~l 168 (216)
+.|++||+|++|||||||+|| |+|+|++.++++|+|+||||||||.|+|+|+.|+ .+|+||||+||++||++|++++
T Consensus 80 ~~i~~lN~d~~V~GIlvq~Pl--p~~~~~~~i~~~I~p~KDVDGl~~~n~g~l~~~~-~~~~PcTp~ai~~ll~~~~i~~ 156 (296)
T PRK14188 80 ALIARLNADPAIHGILVQLPL--PKHLDSEAVIQAIDPEKDVDGLHVVNAGRLATGE-TALVPCTPLGCMMLLRRVHGDL 156 (296)
T ss_pred HHHHHHhCCCCCcEEEEeCCC--CCCCCHHHHHhccCcccccccCChhhHHHHhCCC-CCCcCCCHHHHHHHHHHhCCCC
Confidence 999999999999999999999 9999999999999999999999999999999994 4899999999999999999999
Q ss_pred CCCeEEEecCCCcccHHHHHHhhhCCCEEEEecCCCCChHHHHhcC
Q psy7981 169 AGTNAVVLGRSKIVGTPAAELLKWKHATVTVCHSKTKNIQDVVKSP 214 (216)
Q Consensus 169 ~Gk~vvViGrS~~VG~Pla~lL~~~~ATVtichs~T~~l~~~~k~a 214 (216)
+||+|+|||||.+||+|+|.+|+++|+|||+||++|+++++++++|
T Consensus 157 ~Gk~V~viGrs~~mG~PmA~~L~~~g~tVtv~~~rT~~l~e~~~~A 202 (296)
T PRK14188 157 SGLNAVVIGRSNLVGKPMAQLLLAANATVTIAHSRTRDLPAVCRRA 202 (296)
T ss_pred CCCEEEEEcCCcchHHHHHHHHHhCCCEEEEECCCCCCHHHHHhcC
Confidence 9999999999999999999999999999999999999999999886
No 34
>KOG4230|consensus
Probab=100.00 E-value=2.6e-63 Score=465.93 Aligned_cols=205 Identities=59% Similarity=0.963 Sum_probs=201.3
Q ss_pred hhhhhcccHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcchHHHHHHHHHHHHHcCcceEEEeCCCCCCHHHH
Q psy7981 8 QQAQILSGTAVSGDIREGLKERVKKLKERLPDFEPGLAIVQVGGREDSNVYIRMKMKAAKEIGIDAQHVKLPRSITEIEL 87 (216)
Q Consensus 8 ~~a~il~Gk~vA~~i~~~ik~~v~~l~~~~~~~~P~LaiI~vg~~~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el 87 (216)
|++.||+|+.+|++++++++++++.+++..++|+|.|+|||||++++|..|+|+|.|+|++.||++.++.||+++|+-|+
T Consensus 1 ~~a~IL~Gk~la~kvr~~v~~eI~~ik~~~PnF~p~LaIiQVGnR~DSnvYVrmKlKAA~e~Gid~~~iklPetiTe~el 80 (935)
T KOG4230|consen 1 MVAEILSGKELARKVREDVAEEIQSIKEHHPNFKPVLAIIQVGNREDSNVYVRMKLKAAKEIGIDAKHIKLPETITEGEL 80 (935)
T ss_pred CcchhhccHHHHHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCcCCcceeehhhhhHHHhcCCceEEecCcccccHHHH
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCccEEEEeCCCCCCCCCCHHHHhhhcCCCCCcccCCccchhHhhcCCCC-CcccCCHHHHHHHHHHhCC
Q psy7981 88 LSRLKKLNEDPSVHGIIVQMPLDSDNDINAMLVTDSVSPEKDVDGLNTINEGRVAIGDMN-GFIPCTPNGVLELIKRTNV 166 (216)
Q Consensus 88 ~~~I~~lN~D~~V~GIlvqlPL~~P~~id~~~i~~~I~p~KDVDG~~~~n~G~l~~~~~~-~~~PcTa~av~~lL~~~~i 166 (216)
+..|..||+|+.|||||||+|| |.|+|++.+.++|+|+||||||+++|.|+|..++.+ .|+||||.|||+||+++++
T Consensus 81 l~~I~~lNeD~tvHGiiVQLPL--p~hide~~Vt~aI~peKDVDGf~~~NaG~Lak~~g~p~f~PCTPkGcmeLlk~a~v 158 (935)
T KOG4230|consen 81 LREIKALNEDPTVHGIIVQLPL--PAHIDEDTVTEAIDPEKDVDGFTRINAGRLAKGEGQPTFIPCTPKGCMELLKEAGV 158 (935)
T ss_pred HHHHHhccCCCccceEEEeccC--ccccchhhHhhccCcccccccccccchhhhhccCCCceeeccChHHHHHHHHHcCC
Confidence 9999999999999999999999 999999999999999999999999999999998766 8999999999999999999
Q ss_pred CCCCCeEEEecCCCcccHHHHHHhhhCCCEEEEecCCCCChHHHHhcC
Q psy7981 167 TIAGTNAVVLGRSKIVGTPAAELLKWKHATVTVCHSKTKNIQDVVKSP 214 (216)
Q Consensus 167 ~l~Gk~vvViGrS~~VG~Pla~lL~~~~ATVtichs~T~~l~~~~k~a 214 (216)
.+.||++||+|||.+||.|++.||.+.|||||+|||+|+||.+++.+|
T Consensus 159 ~v~Gk~aVVlGRS~IVG~Pia~LL~~~NaTVTiCHSKT~~lae~v~~A 206 (935)
T KOG4230|consen 159 FVAGKNAVVLGRSKIVGSPIAALLLWANATVTICHSKTRNLAEKVSRA 206 (935)
T ss_pred ccccceeEEEecccccCChHHHHHHhcCceEEEecCCCccHHHHhccC
Confidence 999999999999999999999999999999999999999999999987
No 35
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=100.00 E-value=3.2e-59 Score=414.60 Aligned_cols=203 Identities=40% Similarity=0.680 Sum_probs=195.4
Q ss_pred hhhhhcccHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcchHHHHHHHHHHHHHcCcceEEEeCCCCCCHHHH
Q psy7981 8 QQAQILSGTAVSGDIREGLKERVKKLKERLPDFEPGLAIVQVGGREDSNVYIRMKMKAAKEIGIDAQHVKLPRSITEIEL 87 (216)
Q Consensus 8 ~~a~il~Gk~vA~~i~~~ik~~v~~l~~~~~~~~P~LaiI~vg~~~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el 87 (216)
||+++||||++|++++++++++++.|+++ .|++|+|++|++|+||+|..|++.|.++|+++||+++.+.||+++++++|
T Consensus 1 ~~~~~l~gk~~a~~i~~~~~~~i~~~~~~-~~~~p~L~~i~vg~~~~s~~Y~~~~~~~~~~~Gi~~~~~~l~~~~~~~~l 79 (283)
T PRK14192 1 MMALVLDGKALAKQIEEELSVRVEALKAK-TGRTPILATILVGDDPASATYVRMKGNACRRVGMDSLKVELPQETTTEQL 79 (283)
T ss_pred CCCeEeeHHHHHHHHHHHHHHHHHHHHhc-cCCCCeEEEEEeCCChhHHHHHHHHHHHHHHcCCeEEEEECCCCCCHHHH
Confidence 45678999999999999999999999854 37899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCccEEEEeCCCCCCCCCCHHHHhhhcCCCCCcccCCccchhHhhcCCCCCcccCCHHHHHHHHHHhCCC
Q psy7981 88 LSRLKKLNEDPSVHGIIVQMPLDSDNDINAMLVTDSVSPEKDVDGLNTINEGRVAIGDMNGFIPCTPNGVLELIKRTNVT 167 (216)
Q Consensus 88 ~~~I~~lN~D~~V~GIlvqlPL~~P~~id~~~i~~~I~p~KDVDG~~~~n~G~l~~~~~~~~~PcTa~av~~lL~~~~i~ 167 (216)
.+.|++||+|++||||+||+|+ |+|++++++++.|+|.|||||+|+.|.|+++.|+ ..|.||||.|++++|++|+++
T Consensus 80 ~~~i~~Ln~d~~v~Gi~VqlPl--p~~i~~~~~ld~I~~aKDVdg~n~~n~G~l~~~~-~~~~p~T~~gii~~L~~~~i~ 156 (283)
T PRK14192 80 LAKIEELNANPDVHGILLQHPV--PAQIDERACFDAISLAKDVDGVTCLGFGRMAMGE-AAYGSATPAGIMRLLKAYNIE 156 (283)
T ss_pred HHHHHHHhCCCCCCEEEEeCCC--ccccCHHHHHhccCHHHhcCCCCccccCccccCC-CcccCCcHHHHHHHHHHcCCC
Confidence 9999999999999999999999 9999999999999999999999999999999994 489999999999999999999
Q ss_pred CCCCeEEEecCCCcccHHHHHHhhhCCCEEEEecCCCCChHHHHhcC
Q psy7981 168 IAGTNAVVLGRSKIVGTPAAELLKWKHATVTVCHSKTKNIQDVVKSP 214 (216)
Q Consensus 168 l~Gk~vvViGrS~~VG~Pla~lL~~~~ATVtichs~T~~l~~~~k~a 214 (216)
++||+|+|||||.+||+|++++|+++|||||+||++|++|.+.+++|
T Consensus 157 l~Gk~vvViG~gg~vGkpia~~L~~~gatVtv~~~~t~~L~~~~~~a 203 (283)
T PRK14192 157 LAGKHAVVVGRSAILGKPMAMMLLNANATVTICHSRTQNLPELVKQA 203 (283)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHhCCCEEEEEeCCchhHHHHhccC
Confidence 99999999999999999999999999999999999999999998876
No 36
>KOG0089|consensus
Probab=100.00 E-value=6.7e-59 Score=404.61 Aligned_cols=203 Identities=41% Similarity=0.650 Sum_probs=194.3
Q ss_pred hhhhcccHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcchHHHHHHHHHHHHHcCcceEEEeCCCCCCHHHHH
Q psy7981 9 QAQILSGTAVSGDIREGLKERVKKLKERLPDFEPGLAIVQVGGREDSNVYIRMKMKAAKEIGIDAQHVKLPRSITEIELL 88 (216)
Q Consensus 9 ~a~il~Gk~vA~~i~~~ik~~v~~l~~~~~~~~P~LaiI~vg~~~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~ 88 (216)
++.+++|+.+|..+++++..+++.+++. .|..|+|+.++||+||+|..|+.+|.|+|+++||.+..+++|++.++++++
T Consensus 7 ~~~viagk~~a~~i~~~i~~e~~~~~~~-~g~~P~L~~~lvg~~pas~~Ya~~k~kac~~vGi~s~~~~l~~~~~~~~l~ 85 (309)
T KOG0089|consen 7 TAVVIAGKVAATFIRQEIANEVEGMKES-NGKVPGLVGFLVGEDPASQMYATNKTKACEEVGIKSFQYELPESESEDELE 85 (309)
T ss_pred ceEEEehhHHHHHHHHHHHHHHHHHHhc-CCCCCceeEEEeCCCcchHHHHHHHHHHHHHhhhcccccccccccCHHHHH
Confidence 5788999999999999999999999865 578999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCccEEEEeCCCCCCCCCCHHHHhhhcCCCCCcccCCccchhHhhcCCCC-CcccCCHHHHHHHHHHhCCC
Q psy7981 89 SRLKKLNEDPSVHGIIVQMPLDSDNDINAMLVTDSVSPEKDVDGLNTINEGRVAIGDMN-GFIPCTPNGVLELIKRTNVT 167 (216)
Q Consensus 89 ~~I~~lN~D~~V~GIlvqlPL~~P~~id~~~i~~~I~p~KDVDG~~~~n~G~l~~~~~~-~~~PcTa~av~~lL~~~~i~ 167 (216)
+.|.++|+||+||||+||+|+ |.|++++.|+|+++|+|||||||+.|.|+|..+... .|+||||+||++||++++|+
T Consensus 86 ~~i~~~N~d~sV~GilV~~pv--~~h~~eq~i~n~Vs~eKDVDgfh~~Nigrl~ld~~~~~~lPcTP~gv~eiL~r~gI~ 163 (309)
T KOG0089|consen 86 SAIAEANNDPSVHGILVQLPV--PQHIQEQYILNAVSPEKDVDGFHPLNIGRLALDGREPLFLPCTPLGVVEILERTGIE 163 (309)
T ss_pred HHHHHhcCCCceeeEEEEeec--cccccHHHHHhhcCcccccccccccchhhhccccccccccCCchHHHHHHHHHhCCe
Confidence 999999999999999999999 999999999999999999999999999999987533 69999999999999999999
Q ss_pred CCCCeEEEecCCCcccHHHHHHhhhC--------CCEEEEecCCCCC--hHHHHhcC
Q psy7981 168 IAGTNAVVLGRSKIVGTPAAELLKWK--------HATVTVCHSKTKN--IQDVVKSP 214 (216)
Q Consensus 168 l~Gk~vvViGrS~~VG~Pla~lL~~~--------~ATVtichs~T~~--l~~~~k~a 214 (216)
+.||++||||||++||+|+|+||++. +||||+||++|++ ++.+++.|
T Consensus 164 ~~GKn~VVigRS~iVg~P~A~LL~~dG~~~~~~~datVti~hr~t~~~~lk~ht~~a 220 (309)
T KOG0089|consen 164 TYGKNAVVIGRSKIVGMPLALLLHNDGAHVYSVDDATVTIFHRYTSKPQLKHHTRDA 220 (309)
T ss_pred ecCceEEEEcccccccchHHHHHhhcCCcccccCcceEEEEEcCCCchhHHHHHHhc
Confidence 99999999999999999999999999 9999999999986 68888876
No 37
>PF00763 THF_DHG_CYH: Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; InterPro: IPR020630 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the N-terminal catalytic domain of these enzymes. ; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 2C2X_B 2C2Y_A 1EDZ_A 1EE9_A 4A26_B 3NGL_C 3NGX_A 1B0A_A 1DIA_A 1A4I_B ....
Probab=100.00 E-value=1.1e-38 Score=249.51 Aligned_cols=117 Identities=49% Similarity=0.799 Sum_probs=102.8
Q ss_pred hhcccHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcchHHHHHHHHHHHHHcCcceEEEeCCCCCCHHHHHHH
Q psy7981 11 QILSGTAVSGDIREGLKERVKKLKERLPDFEPGLAIVQVGGREDSNVYIRMKMKAAKEIGIDAQHVKLPRSITEIELLSR 90 (216)
Q Consensus 11 ~il~Gk~vA~~i~~~ik~~v~~l~~~~~~~~P~LaiI~vg~~~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~ 90 (216)
++|+|+++|+.|+++++++++.|+++ |++|+|++|++|+|++|.+|+++|+|+|+++||+++.++||++++++++++.
T Consensus 1 ~iL~Gk~va~~i~~~l~~~i~~l~~~--~~~P~Laii~vg~d~~S~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~ 78 (117)
T PF00763_consen 1 KILDGKPVAKEIKEELKEEIEKLKEK--GITPKLAIILVGDDPASISYVRSKQKAAEKLGIEFELIELPEDISEEELLEL 78 (117)
T ss_dssp EE--HHHHHHHHHHHHHHHHHHHHHC--T---EEEEEEES--HHHHHHHHHHHHHHHHHT-EEEEEEE-TTSSHHHHHHH
T ss_pred CeeeHHHHHHHHHHHHHHHHHHHHhc--CCCcEEEEEecCCChhHHHHHHHHHHHHHHcCCceEEEECCCCcCHHHHHHH
Confidence 47999999999999999999999975 8999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCccEEEEeCCCCCCCCCCHHHHhhhcCCCCCcc
Q psy7981 91 LKKLNEDPSVHGIIVQMPLDSDNDINAMLVTDSVSPEKDVD 131 (216)
Q Consensus 91 I~~lN~D~~V~GIlvqlPL~~P~~id~~~i~~~I~p~KDVD 131 (216)
|++||+|++|||||||+|| |+|+|++.++++|+|.||||
T Consensus 79 i~~lN~D~~V~GIlvq~PL--P~~i~~~~i~~~I~p~KDVD 117 (117)
T PF00763_consen 79 IEKLNEDPSVHGILVQLPL--PKHIDERKILEAIDPEKDVD 117 (117)
T ss_dssp HHHHHH-TT-SEEEEESSS--STTSHHHHHHHTS-GGGBTT
T ss_pred HHHHhCCCCCCEEEEcCCC--CCCccHHHHHhccCcccCCC
Confidence 9999999999999999999 99999999999999999998
No 38
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=100.00 E-value=2.6e-33 Score=236.22 Aligned_cols=89 Identities=27% Similarity=0.462 Sum_probs=83.0
Q ss_pred CCCCcccCCccchhHhhcCCC--------CCcccCCHHHHHHHHHHhCC---------CCCCCeEEEecCCCcccHHHHH
Q psy7981 126 PEKDVDGLNTINEGRVAIGDM--------NGFIPCTPNGVLELIKRTNV---------TIAGTNAVVLGRSKIVGTPAAE 188 (216)
Q Consensus 126 p~KDVDG~~~~n~G~l~~~~~--------~~~~PcTa~av~~lL~~~~i---------~l~Gk~vvViGrS~~VG~Pla~ 188 (216)
|+||||||||.|+|+|+.|.. .+|+||||+||++||++|++ +++||+|||||||++||+|+|+
T Consensus 1 P~KDVDGl~~~n~g~l~~~~~~~~~~~~~~~~~PCTp~avi~lL~~~~i~~~~~~~~~~l~GK~vvVIGrS~iVGkPla~ 80 (197)
T cd01079 1 PHKDVEGLSHKYIFNLYHNIRFLDPENRKKSILPCTPLAIVKILEFLGIYNKILPYGNRLYGKTITIINRSEVVGRPLAA 80 (197)
T ss_pred CCCCcCCCCHHHHHHHhcCCccccccccCCCccCCCHHHHHHHHHHhCCcccccccCCCCCCCEEEEECCCccchHHHHH
Confidence 899999999999999998742 37999999999999999987 8999999999999999999999
Q ss_pred HhhhCCCEEEEe---------------cCCC--CC----hHHHHhcC
Q psy7981 189 LLKWKHATVTVC---------------HSKT--KN----IQDVVKSP 214 (216)
Q Consensus 189 lL~~~~ATVtic---------------hs~T--~~----l~~~~k~a 214 (216)
||+++|||||+| ||+| +| +.+++++|
T Consensus 81 lL~~~~AtVti~~~~~~~~~~~~~~~~hs~t~~~~~~~~l~~~~~~A 127 (197)
T cd01079 81 LLANDGARVYSVDINGIQVFTRGESIRHEKHHVTDEEAMTLDCLSQS 127 (197)
T ss_pred HHHHCCCEEEEEecCcccccccccccccccccccchhhHHHHHhhhC
Confidence 999999999999 8898 57 88999987
No 39
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=99.96 E-value=4.5e-30 Score=211.13 Aligned_cols=80 Identities=48% Similarity=0.843 Sum_probs=70.8
Q ss_pred CccchhHhhcCCCCCcccCCHHHHHHHHHHhCCCCCCCeEEEecCCCcccHHHHHHhhhCCCEEEEecCCCCChHHHHhc
Q psy7981 134 NTINEGRVAIGDMNGFIPCTPNGVLELIKRTNVTIAGTNAVVLGRSKIVGTPAAELLKWKHATVTVCHSKTKNIQDVVKS 213 (216)
Q Consensus 134 ~~~n~G~l~~~~~~~~~PcTa~av~~lL~~~~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~ATVtichs~T~~l~~~~k~ 213 (216)
||+|+|+|+.|. ..|+||||+||++||++|+++++||+|+|||||.+||+|+++||+++|||||+|||+|+|+++++++
T Consensus 1 hp~N~g~l~~~~-~~~~PcTp~aii~lL~~~~~~l~Gk~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T~~l~~~~~~ 79 (160)
T PF02882_consen 1 HPLNLGRLVSGQ-PGFVPCTPLAIIELLEYYGIDLEGKKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKTKNLQEITRR 79 (160)
T ss_dssp SHHHHHHHHTTT-TSS--HHHHHHHHHHHHTT-STTT-EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTSSSHHHHHTT
T ss_pred CcHhHHHHhCCC-CCCcCCCHHHHHHHHHhcCCCCCCCEEEEECCcCCCChHHHHHHHhCCCeEEeccCCCCcccceeee
Confidence 899999999993 4999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred C
Q psy7981 214 P 214 (216)
Q Consensus 214 a 214 (216)
|
T Consensus 80 A 80 (160)
T PF02882_consen 80 A 80 (160)
T ss_dssp S
T ss_pred c
Confidence 7
No 40
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=99.87 E-value=2.1e-22 Score=162.39 Aligned_cols=68 Identities=35% Similarity=0.511 Sum_probs=66.2
Q ss_pred CCcccCCHHHHHHHHHHhCCCCCCCeEEEecCCCcccHHHHHHhhhCCCEEEEecCCCCChHHHHhcC
Q psy7981 147 NGFIPCTPNGVLELIKRTNVTIAGTNAVVLGRSKIVGTPAAELLKWKHATVTVCHSKTKNIQDVVKSP 214 (216)
Q Consensus 147 ~~~~PcTa~av~~lL~~~~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~ATVtichs~T~~l~~~~k~a 214 (216)
+.|+||||+||++||++|+++++||+|+|+|||..||+|++.||+++|||||+|||+|+|+++++++|
T Consensus 5 ~~~~p~t~~a~~~ll~~~~~~~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t~~l~~~v~~A 72 (140)
T cd05212 5 PLFVSPVAKAVKELLNKEGVRLDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKTIQLQSKVHDA 72 (140)
T ss_pred CcccccHHHHHHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCCcCHHHHHhhC
Confidence 37999999999999999999999999999999999999999999999999999999999999999987
No 41
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=99.82 E-value=4e-20 Score=153.16 Aligned_cols=88 Identities=60% Similarity=1.011 Sum_probs=84.2
Q ss_pred CCCCcccCCccchhHhhcCCCCCcccCCHHHHHHHHHHhCCCCCCCeEEEecCCCcccHHHHHHhhhCCCEEEEecCCCC
Q psy7981 126 PEKDVDGLNTINEGRVAIGDMNGFIPCTPNGVLELIKRTNVTIAGTNAVVLGRSKIVGTPAAELLKWKHATVTVCHSKTK 205 (216)
Q Consensus 126 p~KDVDG~~~~n~G~l~~~~~~~~~PcTa~av~~lL~~~~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~ATVtichs~T~ 205 (216)
|+||||||+..|.|+++.+. ..|+||||.|++++++++..++.||+|+|||++.++|.|++.+|.++|++|++||+.+.
T Consensus 1 ~~kdvdg~~~~~~~~~~~~~-~~~~p~~~~a~v~l~~~~~~~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~~ 79 (168)
T cd01080 1 PEKDVDGLHPVNLGRLALGR-PGFIPCTPAGILELLKRYGIDLAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKTK 79 (168)
T ss_pred CCccccCCCccchhhHhcCC-CCccCChHHHHHHHHHHcCCCCCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCch
Confidence 79999999999999999884 48999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHhcC
Q psy7981 206 NIQDVVKSP 214 (216)
Q Consensus 206 ~l~~~~k~a 214 (216)
++.+++++|
T Consensus 80 ~l~~~l~~a 88 (168)
T cd01080 80 NLKEHTKQA 88 (168)
T ss_pred hHHHHHhhC
Confidence 999988876
No 42
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=97.69 E-value=0.00024 Score=62.77 Aligned_cols=130 Identities=21% Similarity=0.287 Sum_probs=89.4
Q ss_pred HHHHHHHcCcceEEEeCCCCCCHHHHHHHHHHhcCCCCccEEEEeCCCCCCCCCCHHHHhhhcCCC-CCcccCCcc-ch-
Q psy7981 62 KMKAAKEIGIDAQHVKLPRSITEIELLSRLKKLNEDPSVHGIIVQMPLDSDNDINAMLVTDSVSPE-KDVDGLNTI-NE- 138 (216)
Q Consensus 62 k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvqlPL~~P~~id~~~i~~~I~p~-KDVDG~~~~-n~- 138 (216)
--.++++.|++.....|. +..+++.+.++.+... ++.|.-|..|. +.+.-.+++.++|. |-+-.++.+ +-
T Consensus 24 hn~~~~~~gl~~~y~~~~--v~~~~l~~~~~~~~~~-~~~G~nVT~P~----K~~~~~~~d~~~~~A~~igavNtv~~~~ 96 (278)
T PRK00258 24 HNAAFKQLGLDGVYLAIL--VPPEDLEDAVKGFFAL-GGRGANVTVPF----KEAAFALADELSERARLIGAVNTLVLED 96 (278)
T ss_pred HHHHHHHcCCCcEEEEEe--cCHHHHHHHHHHHHhC-CCCEEEECcCC----HHHHHHHhhcCCHHHHHhCCceEEEeeC
Confidence 367789999999877764 4567888888888665 79999999997 34334444444442 112222211 10
Q ss_pred hHhhcCCCCCcccCCHHHHHHHHHH-hCCCCCCCeEEEecCCCcccHHHHHHhhhCC-CEEEEecCCCC
Q psy7981 139 GRVAIGDMNGFIPCTPNGVLELIKR-TNVTIAGTNAVVLGRSKIVGTPAAELLKWKH-ATVTVCHSKTK 205 (216)
Q Consensus 139 G~l~~~~~~~~~PcTa~av~~lL~~-~~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~-ATVtichs~T~ 205 (216)
|++ .| .=-...|.++.|+. .++++.||+|+|+|.+ -+|+.++..|..+| +.|+++.+...
T Consensus 97 g~l-~G-----~NTD~~G~~~~l~~~~~~~~~~k~vlVlGaG-g~a~ai~~aL~~~g~~~V~v~~R~~~ 158 (278)
T PRK00258 97 GRL-IG-----DNTDGIGFVRALEERLGVDLKGKRILILGAG-GAARAVILPLLDLGVAEITIVNRTVE 158 (278)
T ss_pred CEE-EE-----EcccHHHHHHHHHhccCCCCCCCEEEEEcCc-HHHHHHHHHHHHcCCCEEEEEeCCHH
Confidence 111 11 11256788888886 6789999999999975 66999999999999 78999976543
No 43
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=97.65 E-value=0.0003 Score=61.84 Aligned_cols=128 Identities=16% Similarity=0.221 Sum_probs=89.0
Q ss_pred HHHHHHHcCcceEEEeCCCCCCHHHHHHHHHHhcCCCCccEEEEeCCCCCCCCCCHHHHhhhcCCC-CCcccCCcc-c-h
Q psy7981 62 KMKAAKEIGIDAQHVKLPRSITEIELLSRLKKLNEDPSVHGIIVQMPLDSDNDINAMLVTDSVSPE-KDVDGLNTI-N-E 138 (216)
Q Consensus 62 k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvqlPL~~P~~id~~~i~~~I~p~-KDVDG~~~~-n-~ 138 (216)
--.+.++.|++.....|+ +..+++.+.++.+... ++.|.-|..|. +.+.-.+++.++|. |-+-.++.+ + -
T Consensus 19 hn~~~~~~g~~~~y~~~~--v~~~~l~~~~~~~~~~-~~~G~nVT~P~----K~~~~~~~d~~~~~A~~~gavNti~~~~ 91 (270)
T TIGR00507 19 HNAFFKQLGLEGPYIAFL--VPPDDLEDALSGFFAL-GFKGANVTSPF----KEEAFQFLDEIDERAKLAGAVNTLKLED 91 (270)
T ss_pred HHHHHHHcCCCcEEEEEe--cCHHHHHHHHHHHHhc-CCCEEEECcCC----HHHHHHHhhhCCHHHHHhCCceEEEeeC
Confidence 355678999998887765 3456788888888654 79999999997 34434455555442 222222221 1 1
Q ss_pred hHhhcCCCCCcccCCHHHHHHHHHHhCCCCCCCeEEEecCCCcccHHHHHHhhhCCCEEEEecCC
Q psy7981 139 GRVAIGDMNGFIPCTPNGVLELIKRTNVTIAGTNAVVLGRSKIVGTPAAELLKWKHATVTVCHSK 203 (216)
Q Consensus 139 G~l~~~~~~~~~PcTa~av~~lL~~~~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~ATVtichs~ 203 (216)
|++ .| .=.-..|+++.|++++....||+++|+|.+ -.|++++..|...++.|+++.+.
T Consensus 92 g~l-~g-----~NTD~~G~~~~l~~~~~~~~~k~vliiGaG-g~g~aia~~L~~~g~~v~v~~R~ 149 (270)
T TIGR00507 92 GKL-VG-----YNTDGIGLVSDLERLIPLRPNQRVLIIGAG-GAARAVALPLLKADCNVIIANRT 149 (270)
T ss_pred CEE-EE-----EcCCHHHHHHHHHhcCCCccCCEEEEEcCc-HHHHHHHHHHHHCCCEEEEEeCC
Confidence 111 11 113567888888887777889999999997 78999999999999999999754
No 44
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=97.53 E-value=0.00015 Score=53.14 Aligned_cols=50 Identities=32% Similarity=0.498 Sum_probs=44.2
Q ss_pred CCHHHHHHHHHHhC----CCCCCCeEEEecCCCcccHHHHHHhhhC-CCEEEEecC
Q psy7981 152 CTPNGVLELIKRTN----VTIAGTNAVVLGRSKIVGTPAAELLKWK-HATVTVCHS 202 (216)
Q Consensus 152 cTa~av~~lL~~~~----i~l~Gk~vvViGrS~~VG~Pla~lL~~~-~ATVtichs 202 (216)
||+.++++.|++.. .++++|+++|+|. ..+|++++.+|.+. +.+|+++++
T Consensus 1 ~t~~~~~~~l~~~~~~~~~~~~~~~v~i~G~-G~~g~~~a~~l~~~~~~~v~v~~r 55 (86)
T cd05191 1 ATAAGAVALLKAAGKVTNKSLKGKTVVVLGA-GEVGKGIAKLLADEGGKKVVLCDR 55 (86)
T ss_pred ChhHHHHHHHHHHHHHhCCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEEcC
Confidence 79999999998764 4599999999999 77899999999998 788999876
No 45
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=97.44 E-value=0.0022 Score=57.13 Aligned_cols=132 Identities=19% Similarity=0.210 Sum_probs=88.7
Q ss_pred HHHHHHHHcCcceEEEeCCCC---CCHHHHHHHHHHhcCCCCccEEEEeCCCCCCCCCCHHHHhhhcCCC-CCcccCCcc
Q psy7981 61 MKMKAAKEIGIDAQHVKLPRS---ITEIELLSRLKKLNEDPSVHGIIVQMPLDSDNDINAMLVTDSVSPE-KDVDGLNTI 136 (216)
Q Consensus 61 ~k~k~a~~~Gi~~~~~~l~~~---~~~~el~~~I~~lN~D~~V~GIlvqlPL~~P~~id~~~i~~~I~p~-KDVDG~~~~ 136 (216)
.--.+.++.|++.....|.-. ++.++|.+.++.+.. .++.|.-|..|. +...-.+++.++|. +-+-.++.+
T Consensus 23 ihn~~f~~~gl~~~Y~~~~v~~~~v~~~~l~~~~~~l~~-~~~~G~nVTiP~----K~~v~~~~D~~~~~A~~iGAvNTv 97 (284)
T PRK12549 23 MHEAEGDAQGLRYVYRLIDLDALGLTADALPELLDAAER-MGFAGLNITHPC----KQAVIPHLDELSDDARALGAVNTV 97 (284)
T ss_pred HHHHHHHHcCCCeEEEEEeeccccCCHHHHHHHHHHHHh-cCCCEEEECcCC----HHHHHHHhccCCHHHHHhCCceEE
Confidence 345678999999988777632 356788888887753 479999999997 33333444444441 111112211
Q ss_pred -c-hhHhhcCCCCCcccCCHHHHHHHHHHhCCCCCCCeEEEecCCCcccHHHHHHhhhCCC-EEEEecCCC
Q psy7981 137 -N-EGRVAIGDMNGFIPCTPNGVLELIKRTNVTIAGTNAVVLGRSKIVGTPAAELLKWKHA-TVTVCHSKT 204 (216)
Q Consensus 137 -n-~G~l~~~~~~~~~PcTa~av~~lL~~~~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~A-TVtichs~T 204 (216)
+ -|++ .|. =.--.|+++.|+..+.++.||+|+|+|.+. +|+.++..|...|+ .|+++.+..
T Consensus 98 ~~~~g~l-~G~-----NTD~~G~~~~l~~~~~~~~~k~vlIlGaGG-aaraia~aL~~~G~~~I~I~nR~~ 161 (284)
T PRK12549 98 VFRDGRR-IGH-----NTDWSGFAESFRRGLPDASLERVVQLGAGG-AGAAVAHALLTLGVERLTIFDVDP 161 (284)
T ss_pred EecCCEE-EEE-----cCCHHHHHHHHHhhccCccCCEEEEECCcH-HHHHHHHHHHHcCCCEEEEECCCH
Confidence 0 0111 111 123478888998877788999999999988 59999999999998 699997643
No 46
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=97.40 E-value=0.0029 Score=56.28 Aligned_cols=143 Identities=17% Similarity=0.253 Sum_probs=91.3
Q ss_pred EEEeCCCcchHHHH-HHHHHHHHHcCcceEEEeCCCCCCHHHHHHHHHHhcCCCCccEEEEeCCCCCCCCCCHHHHhhhc
Q psy7981 46 IVQVGGREDSNVYI-RMKMKAAKEIGIDAQHVKLPRSITEIELLSRLKKLNEDPSVHGIIVQMPLDSDNDINAMLVTDSV 124 (216)
Q Consensus 46 iI~vg~~~as~~Yv-~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvqlPL~~P~~id~~~i~~~I 124 (216)
.-.+|+ |-+++.- ..--.+.++.|++...+.++-. +.++|.+.++.+. .++.|.-|.+|. +...-.+++.+
T Consensus 8 ~~liG~-Pi~hS~SP~ihn~~f~~~gl~~~y~~~~~~-~~~~l~~~~~~~~--~~~~G~nVT~P~----K~~~~~~~d~~ 79 (282)
T TIGR01809 8 AFIIGK-PIAHSRSPHLHNAGYEILGLPDKTYEFETC-SAEELKEVLSGFG--PQFGGASVTIPL----KFAILRFADEH 79 (282)
T ss_pred EEEEcC-CchhccCHHHHHHHHHHcCCCcEEEeeecC-CHHHHHHHHHhcC--CCCcEEEECCCC----HHHHHHHhhcC
Confidence 455674 4333322 2334578899999888777632 3578899998883 389999999998 33333444444
Q ss_pred CCC-CCcccCCcc-c--hhHhhcCCCCCcccCCHHHHHHHHHHhCC--CCCCCeEEEecCCCcccHHHHHHhhhCCC-EE
Q psy7981 125 SPE-KDVDGLNTI-N--EGRVAIGDMNGFIPCTPNGVLELIKRTNV--TIAGTNAVVLGRSKIVGTPAAELLKWKHA-TV 197 (216)
Q Consensus 125 ~p~-KDVDG~~~~-n--~G~l~~~~~~~~~PcTa~av~~lL~~~~i--~l~Gk~vvViGrS~~VG~Pla~lL~~~~A-TV 197 (216)
+|. |-+=.++.+ + -|++ .|. =---.|+++-|++.+. +++||+|+|||.+.. |+-++.-|...|+ +|
T Consensus 80 ~~~A~~iGAVNTv~~~~~g~l-~G~-----NTD~~G~~~~l~~~~~~~~~~~k~vlvlGaGGa-arai~~aL~~~G~~~i 152 (282)
T TIGR01809 80 TDRASLIGSVNTLLRTQNGIW-KGD-----NTDWDGIAGALANIGKFEPLAGFRGLVIGAGGT-SRAAVYALASLGVTDI 152 (282)
T ss_pred CHHHHHhCceeEEEEcCCCcE-EEe-----cCCHHHHHHHHHhhCCccccCCceEEEEcCcHH-HHHHHHHHHHcCCCeE
Confidence 431 111111111 0 0111 111 0123688888888774 689999999999887 8999999999996 69
Q ss_pred EEecCC
Q psy7981 198 TVCHSK 203 (216)
Q Consensus 198 tichs~ 203 (216)
+++.+.
T Consensus 153 ~I~nRt 158 (282)
T TIGR01809 153 TVINRN 158 (282)
T ss_pred EEEeCC
Confidence 999753
No 47
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=97.35 E-value=0.0013 Score=58.70 Aligned_cols=128 Identities=21% Similarity=0.306 Sum_probs=88.8
Q ss_pred HHHHHHHcCcceEEEeCCCCCCHHHHHHHHHHhcCCCCccEEEEeCCCCCCCCCCHHHHhhhcCCC-CCcccCCcc-c-h
Q psy7981 62 KMKAAKEIGIDAQHVKLPRSITEIELLSRLKKLNEDPSVHGIIVQMPLDSDNDINAMLVTDSVSPE-KDVDGLNTI-N-E 138 (216)
Q Consensus 62 k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvqlPL~~P~~id~~~i~~~I~p~-KDVDG~~~~-n-~ 138 (216)
--.+.++.|+++....|. +..++|.+.++.+... ++.|.-|..|. +.+.-.+++.++|. +-+-.++.+ + -
T Consensus 28 hn~~f~~~gl~~~Y~~~~--v~~~~l~~~~~~~~~~-~~~G~nVT~P~----K~~v~~~ld~~~~~A~~iGavNTi~~~~ 100 (289)
T PRK12548 28 YNYSFQKAGLDYAYLAFD--IPVDKVPDAIKAIKTF-NMRGANVTMPC----KSEAAKYMDELSPAARIIGAVNTIVNDD 100 (289)
T ss_pred HHHHHHHcCCCEEEEEEe--cCHHHHHHHHHHHHHC-CCCEEEECccC----HHHHHHHhhcCCHHHHHhCceeEEEeEC
Confidence 345678999998877775 3467888888887643 79999999997 34444555555542 112222211 0 0
Q ss_pred hHhhcCCCCCcccCCHHHHHHHHHHhCCCCCCCeEEEecCCCcccHHHHHHhhhCCCE-EEEecCC
Q psy7981 139 GRVAIGDMNGFIPCTPNGVLELIKRTNVTIAGTNAVVLGRSKIVGTPAAELLKWKHAT-VTVCHSK 203 (216)
Q Consensus 139 G~l~~~~~~~~~PcTa~av~~lL~~~~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~AT-Vtichs~ 203 (216)
|++. |. =.--.|+++.|+.++.+++||+|+|+|.+ =.|+-++..|...|+. |+++.+.
T Consensus 101 g~l~-G~-----NTD~~G~~~~l~~~~~~~~~k~vlI~GAG-GagrAia~~La~~G~~~V~I~~R~ 159 (289)
T PRK12548 101 GKLT-GH-----ITDGLGFVRNLREHGVDVKGKKLTVIGAG-GAATAIQVQCALDGAKEITIFNIK 159 (289)
T ss_pred CEEE-EE-----ecCHHHHHHHHHhcCCCcCCCEEEEECCc-HHHHHHHHHHHHCCCCEEEEEeCC
Confidence 2221 21 11257889999988889999999999998 5699999999999997 9998754
No 48
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=97.32 E-value=0.00044 Score=58.54 Aligned_cols=58 Identities=26% Similarity=0.280 Sum_probs=47.6
Q ss_pred cCCHHHHHHHHHHh------CCCCCCCeEEEecCCCcccHHHHHHhhhCCCEEEEecCCCCChHH
Q psy7981 151 PCTPNGVLELIKRT------NVTIAGTNAVVLGRSKIVGTPAAELLKWKHATVTVCHSKTKNIQD 209 (216)
Q Consensus 151 PcTa~av~~lL~~~------~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~ATVtichs~T~~l~~ 209 (216)
|.|+.|+...++.. +.+++||+|+|+|-+ -||++++..|.+.|+.|+++......+.+
T Consensus 3 ~aTg~Gv~~~~~~~~~~~~~~~~l~gk~v~I~G~G-~vG~~~A~~L~~~G~~Vvv~D~~~~~~~~ 66 (200)
T cd01075 3 PPTAYGVFLGMKAAAEHLLGTDSLEGKTVAVQGLG-KVGYKLAEHLLEEGAKLIVADINEEAVAR 66 (200)
T ss_pred ChhHHHHHHHHHHHHHHhcCCCCCCCCEEEEECCC-HHHHHHHHHHHHCCCEEEEEcCCHHHHHH
Confidence 67899986666543 789999999999999 58999999999999999998765443433
No 49
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=97.32 E-value=0.0037 Score=55.58 Aligned_cols=146 Identities=15% Similarity=0.206 Sum_probs=96.0
Q ss_pred CCCceEEEEEeCCCcchHHHHHHHHHHHHHcCcceEEEeCCCCCCHHHHHHHHHHhcCCCCccEEEEeCCCCCCCCCCHH
Q psy7981 39 DFEPGLAIVQVGGREDSNVYIRMKMKAAKEIGIDAQHVKLPRSITEIELLSRLKKLNEDPSVHGIIVQMPLDSDNDINAM 118 (216)
Q Consensus 39 ~~~P~LaiI~vg~~~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvqlPL~~P~~id~~ 118 (216)
+..++|..=++|+. -|++-. .--.+.+++|+++....|+ .++|.+.++.+..- ++.|.-|..|. +...-
T Consensus 6 ~~~~~~~~gliG~P-~~~Sp~-ihn~~f~~~gl~~~Y~~~~----~~~l~~~~~~l~~~-~~~G~nVT~P~----K~~~~ 74 (272)
T PRK12550 6 NKDTQLCISLAARP-SNFGTR-FHNYLYEALGLNFLYKAFT----TTDLTAAIGGVRAL-GIRGCAVSMPF----KEAVI 74 (272)
T ss_pred CCCceEEEEEEccc-hhcCHH-HHHHHHHHcCCCcEEEecC----HhHHHHHHHHHHhc-CCCEEEECcCC----HHHHH
Confidence 34567656667844 666655 5567789999999988886 35676777766543 69999999997 33334
Q ss_pred HHhhhcCCC-CCcccCCcc-c-hhHhhcCCCCCcccCCHHHHHHHHHHhCCCCCCCeEEEecCCCcccHHHHHHhhhCCC
Q psy7981 119 LVTDSVSPE-KDVDGLNTI-N-EGRVAIGDMNGFIPCTPNGVLELIKRTNVTIAGTNAVVLGRSKIVGTPAAELLKWKHA 195 (216)
Q Consensus 119 ~i~~~I~p~-KDVDG~~~~-n-~G~l~~~~~~~~~PcTa~av~~lL~~~~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~A 195 (216)
.+++.++|. +.+-.++.+ + -|++ .|. =.--.|+++-|+.++++ .+++|+|+|.+.. ++.++.-|.+.|+
T Consensus 75 ~~lD~l~~~A~~iGAVNTi~~~~g~l-~G~-----NTD~~Gf~~~L~~~~~~-~~~~vlilGaGGa-arAi~~aL~~~g~ 146 (272)
T PRK12550 75 PLVDELDPSAQAIESVNTIVNTDGHL-KAY-----NTDYIAIAKLLASYQVP-PDLVVALRGSGGM-AKAVAAALRDAGF 146 (272)
T ss_pred HHhhcCCHHHHHhCCeeEEEeeCCEE-EEE-----ecCHHHHHHHHHhcCCC-CCCeEEEECCcHH-HHHHHHHHHHCCC
Confidence 444444441 111111111 0 0111 111 12347888999888876 4789999998876 8999999999998
Q ss_pred E-EEEecCC
Q psy7981 196 T-VTVCHSK 203 (216)
Q Consensus 196 T-Vtichs~ 203 (216)
. |+++.+.
T Consensus 147 ~~i~i~nR~ 155 (272)
T PRK12550 147 TDGTIVARN 155 (272)
T ss_pred CEEEEEeCC
Confidence 5 9999764
No 50
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=97.11 E-value=0.003 Score=60.24 Aligned_cols=142 Identities=19% Similarity=0.308 Sum_probs=91.4
Q ss_pred EEeCCCcchHHH-HHHHHHHHHHcCcceEEEeCCCCCCHHHHHHHHHHhcCCCCccEEEEeCCCCCCCCCCHHHHhhhcC
Q psy7981 47 VQVGGREDSNVY-IRMKMKAAKEIGIDAQHVKLPRSITEIELLSRLKKLNEDPSVHGIIVQMPLDSDNDINAMLVTDSVS 125 (216)
Q Consensus 47 I~vg~~~as~~Y-v~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvqlPL~~P~~id~~~i~~~I~ 125 (216)
-.+|+ |-+++. =..--.+.++.|++.....|+ +..+++.+.++.+.. .++.|.-|..|. +...-..++.++
T Consensus 219 ~liG~-pi~hS~SP~~hn~~f~~~gl~~~Y~~~~--v~~~~l~~~~~~~~~-~~~~G~nVT~P~----K~~v~~~~d~~~ 290 (477)
T PRK09310 219 GLIGD-PVDRSISHLSHNPLFSQLSLNCPYIKLP--LTPQELPKFFSTIRD-LPFLGLSVTMPL----KTAVLDFLDKLD 290 (477)
T ss_pred EEECC-CcccccCHHHHHHHHHHcCCCcEEEEee--cCHHHHHHHHHHHHh-CCCCEEEECccC----HHHHHHHhccCC
Confidence 36675 322221 223456778999998877665 334667666666643 369999999997 333333444443
Q ss_pred CC-CCcccCCcc-c-hhHhhcCCCCCcccCCHHHHHHHHHHhCCCCCCCeEEEecCCCcccHHHHHHhhhCCCEEEEecC
Q psy7981 126 PE-KDVDGLNTI-N-EGRVAIGDMNGFIPCTPNGVLELIKRTNVTIAGTNAVVLGRSKIVGTPAAELLKWKHATVTVCHS 202 (216)
Q Consensus 126 p~-KDVDG~~~~-n-~G~l~~~~~~~~~PcTa~av~~lL~~~~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~ATVtichs 202 (216)
|. +-+-.++.+ + -|+++ |. =.--.|++..|+..+.+++|++++|+|-+ -+|++++..|.+.|+.|+++.+
T Consensus 291 ~~A~~iGAVNTv~~~~g~l~-G~-----NTD~~G~~~~l~~~~~~~~~k~vlIiGaG-giG~aia~~L~~~G~~V~i~~R 363 (477)
T PRK09310 291 PSVKLCGSCNTLVFRNGKIE-GY-----NTDGEGLFSLLKQKNIPLNNQHVAIVGAG-GAAKAIATTLARAGAELLIFNR 363 (477)
T ss_pred HHHHHhCcceEEEeeCCEEE-EE-----ecCHHHHHHHHHhcCCCcCCCEEEEEcCc-HHHHHHHHHHHHCCCEEEEEeC
Confidence 31 112222221 1 11221 11 12347899999999999999999999976 7899999999999999999865
Q ss_pred C
Q psy7981 203 K 203 (216)
Q Consensus 203 ~ 203 (216)
.
T Consensus 364 ~ 364 (477)
T PRK09310 364 T 364 (477)
T ss_pred C
Confidence 3
No 51
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=97.06 E-value=0.0011 Score=63.48 Aligned_cols=43 Identities=35% Similarity=0.432 Sum_probs=38.5
Q ss_pred HHHHhCCCCCCCeEEEecCCCcccHHHHHHhhhCCCEEEEecCC
Q psy7981 160 LIKRTNVTIAGTNAVVLGRSKIVGTPAAELLKWKHATVTVCHSK 203 (216)
Q Consensus 160 lL~~~~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~ATVtichs~ 203 (216)
+++.+++.+.||+|+|||.+. ||++++..|...|++|++|++.
T Consensus 244 ~~R~~~~~LaGKtVgVIG~G~-IGr~vA~rL~a~Ga~ViV~e~d 286 (476)
T PTZ00075 244 IFRATDVMIAGKTVVVCGYGD-VGKGCAQALRGFGARVVVTEID 286 (476)
T ss_pred HHHhcCCCcCCCEEEEECCCH-HHHHHHHHHHHCCCEEEEEeCC
Confidence 445568999999999999997 8999999999999999999764
No 52
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=97.05 E-value=0.0054 Score=54.91 Aligned_cols=129 Identities=22% Similarity=0.299 Sum_probs=86.9
Q ss_pred HHHHHHHHcCcceEEEeCCCCCCHHHHHHHHHHhcCCCCccEEEEeCCCCCCCCCCHHHHhhhcCCC-CCcccCCcc--c
Q psy7981 61 MKMKAAKEIGIDAQHVKLPRSITEIELLSRLKKLNEDPSVHGIIVQMPLDSDNDINAMLVTDSVSPE-KDVDGLNTI--N 137 (216)
Q Consensus 61 ~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvqlPL~~P~~id~~~i~~~I~p~-KDVDG~~~~--n 137 (216)
.--.+.++.|++.....+. +..++|.+.++.+... ++.|.-|.+|. +...-.+++.++|. |-+=.++.+ .
T Consensus 25 ihn~~f~~~gl~~~Y~~~~--v~~~~l~~~~~~l~~~-~~~G~nVTiP~----K~~~~~~~D~l~~~A~~iGAVNTv~~~ 97 (288)
T PRK12749 25 MQNKALEKAGLPFTYMAFE--VDNDSFPGAIEGLKAL-KMRGTGVSMPN----KQLACEYVDELTPAAKLVGAINTIVND 97 (288)
T ss_pred HHHHHHHHcCCCeEEEEEe--cCHHHHHHHHHHHHhc-CCCEEEECcCC----HHHHHHHhccCCHHHHHhCceeEEEcc
Confidence 3456778999998776664 4557888888877544 69999999997 33333344444331 111122211 0
Q ss_pred hhHhhcCCCCCcccCCHHHHHHHHHHhCCCCCCCeEEEecCCCcccHHHHHHhhhCCC-EEEEecCC
Q psy7981 138 EGRVAIGDMNGFIPCTPNGVLELIKRTNVTIAGTNAVVLGRSKIVGTPAAELLKWKHA-TVTVCHSK 203 (216)
Q Consensus 138 ~G~l~~~~~~~~~PcTa~av~~lL~~~~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~A-TVtichs~ 203 (216)
-|++. |. =.--.|+++-|+..+++++||+|+|+|.+.. ++.++..|..+|+ .|+++.+.
T Consensus 98 ~g~l~-G~-----NTD~~Gf~~~l~~~~~~~~~k~vlvlGaGGa-arAi~~~l~~~g~~~i~i~nRt 157 (288)
T PRK12749 98 DGYLR-GY-----NTDGTGHIRAIKESGFDIKGKTMVLLGAGGA-STAIGAQGAIEGLKEIKLFNRR 157 (288)
T ss_pred CCEEE-EE-----ecCHHHHHHHHHhcCCCcCCCEEEEECCcHH-HHHHHHHHHHCCCCEEEEEeCC
Confidence 12211 11 1134788999999999999999999999988 8999998988886 68888764
No 53
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=96.82 E-value=0.0017 Score=58.14 Aligned_cols=53 Identities=38% Similarity=0.465 Sum_probs=45.6
Q ss_pred CCHHH-HHHHHHHhCCCCCCCeEEEecCCCcccHHHHHHhhhCCCEEEEecCCCC
Q psy7981 152 CTPNG-VLELIKRTNVTIAGTNAVVLGRSKIVGTPAAELLKWKHATVTVCHSKTK 205 (216)
Q Consensus 152 cTa~a-v~~lL~~~~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~ATVtichs~T~ 205 (216)
.|+.+ +...++++++++.|++|+|+|.+. +|++++..|...|++|+++++.+.
T Consensus 133 ~~aegav~~a~~~~~~~l~g~kvlViG~G~-iG~~~a~~L~~~Ga~V~v~~r~~~ 186 (296)
T PRK08306 133 PTAEGAIMMAIEHTPITIHGSNVLVLGFGR-TGMTLARTLKALGANVTVGARKSA 186 (296)
T ss_pred hHHHHHHHHHHHhCCCCCCCCEEEEECCcH-HHHHHHHHHHHCCCEEEEEECCHH
Confidence 35544 556788889999999999999987 899999999999999999988754
No 54
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=96.70 E-value=0.016 Score=51.81 Aligned_cols=130 Identities=15% Similarity=0.148 Sum_probs=88.8
Q ss_pred HHHHHHHHcCcceEEEeCCCC---CCHHHHHHHHHHhcCCCCccEEEEeCCCCCCCCCCHHHHhhhcCC-CCCcccCCcc
Q psy7981 61 MKMKAAKEIGIDAQHVKLPRS---ITEIELLSRLKKLNEDPSVHGIIVQMPLDSDNDINAMLVTDSVSP-EKDVDGLNTI 136 (216)
Q Consensus 61 ~k~k~a~~~Gi~~~~~~l~~~---~~~~el~~~I~~lN~D~~V~GIlvqlPL~~P~~id~~~i~~~I~p-~KDVDG~~~~ 136 (216)
.--.+.++.|+++....|+-. .+.++|.+.++.+... ++.|.-|.+|. +...-.+++.++| .+.+-.++.+
T Consensus 22 ihn~~f~~~gl~~~Y~~~~v~~~~~~~~~l~~~~~~~~~~-~~~G~nVT~P~----K~~~~~~lD~l~~~A~~iGAVNTv 96 (283)
T PRK14027 22 MHEAEGLAQGRATVYRRIDTLGSRASGQDLKTLLDAALYL-GFNGLNITHPY----KQAVLPLLDEVSEQATQLGAVNTV 96 (283)
T ss_pred HHHHHHHHcCCCeEEEEEecccccCCHHHHHHHHHHHHhc-CCCEEEECccC----HHHHHHHhhhCCHHHHHhCCceEE
Confidence 335668899999988877622 3467788888877544 79999999997 4444455555555 2223333322
Q ss_pred -c--hhHhhcCCCCCcccCCHHHHHHHHHHhCCCCCCCeEEEecCCCcccHHHHHHhhhCCC-EEEEecC
Q psy7981 137 -N--EGRVAIGDMNGFIPCTPNGVLELIKRTNVTIAGTNAVVLGRSKIVGTPAAELLKWKHA-TVTVCHS 202 (216)
Q Consensus 137 -n--~G~l~~~~~~~~~PcTa~av~~lL~~~~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~A-TVtichs 202 (216)
+ -|++ .|.. ---.|+++.|++.+.+++||+|+|+|.+.. ++.++.-|...|+ .++++.+
T Consensus 97 ~~~~~g~l-~G~N-----TD~~Gf~~~L~~~~~~~~~k~vlilGaGGa-arAi~~aL~~~g~~~i~i~nR 159 (283)
T PRK14027 97 VIDATGHT-TGHN-----TDVSGFGRGMEEGLPNAKLDSVVQVGAGGV-GNAVAYALVTHGVQKLQVADL 159 (283)
T ss_pred EECCCCcE-EEEc-----CCHHHHHHHHHhcCcCcCCCeEEEECCcHH-HHHHHHHHHHCCCCEEEEEcC
Confidence 1 1222 1210 123688888887667789999999999876 8999999998886 6889975
No 55
>PRK14804 ornithine carbamoyltransferase; Provisional
Probab=96.49 E-value=0.039 Score=50.02 Aligned_cols=126 Identities=13% Similarity=0.121 Sum_probs=89.8
Q ss_pred HHHHHHHHHcCcceEEEeCCCC-CCHHHHHHHHHHhcCCCCccEEEEeCCCCCCCCCCHHHHhhhcCCCCCcccCCccch
Q psy7981 60 RMKMKAAKEIGIDAQHVKLPRS-ITEIELLSRLKKLNEDPSVHGIIVQMPLDSDNDINAMLVTDSVSPEKDVDGLNTINE 138 (216)
Q Consensus 60 ~~k~k~a~~~Gi~~~~~~l~~~-~~~~el~~~I~~lN~D~~V~GIlvqlPL~~P~~id~~~i~~~I~p~KDVDG~~~~n~ 138 (216)
-+=..++.++|.++....-.+. ++.+.+.+.++-|+. .+|+|++=.|- +-....+.+. -+ +-.+|.
T Consensus 59 ~SFe~A~~~LGg~~i~l~~~~~~~~~~~~~dt~~vls~--~~D~iv~R~~~----~~~~~~~a~~----~~---vPVINa 125 (311)
T PRK14804 59 VSFEVAMTEMGGHGIYLDWMASNFQLSDIDLEARYLSR--NVSVIMARLKK----HEDLLVMKNG----SQ---VPVING 125 (311)
T ss_pred HHHHHHHHHcCCeEEEeCCCccccccccHHHHHHHHHh--cCCEEEEeCCC----hHHHHHHHHH----CC---CCEEEC
Confidence 3457899999999887755322 233444455777766 69999987664 3333333322 12 344665
Q ss_pred hHhhcCCCCCcccCCHHH-HHHHHHHhCC-CCCCCeEEEecCCCcccHHHHHHhhhCCCEEEEecCCC
Q psy7981 139 GRVAIGDMNGFIPCTPNG-VLELIKRTNV-TIAGTNAVVLGRSKIVGTPAAELLKWKHATVTVCHSKT 204 (216)
Q Consensus 139 G~l~~~~~~~~~PcTa~a-v~~lL~~~~i-~l~Gk~vvViGrS~~VG~Pla~lL~~~~ATVtichs~T 204 (216)
| . ....||=+++ ++.+.+++|. +++|++|++||..+.|-+.+..++..-|+.|++|+=++
T Consensus 126 g---~---~~~HPtQaL~Dl~Ti~e~~g~~~l~g~~va~vGd~~rv~~Sl~~~~~~~G~~v~~~~P~~ 187 (311)
T PRK14804 126 C---D---NMFHPCQSLADIMTIALDSPEIPLNQKQLTYIGVHNNVVNSLIGITAALGIHLTLVTPIA 187 (311)
T ss_pred C---C---CCCChHHHHHHHHHHHHHhCCCCCCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEECCCC
Confidence 4 1 2588998887 5666677775 79999999999999999999999999999999998766
No 56
>PRK14805 ornithine carbamoyltransferase; Provisional
Probab=96.49 E-value=0.2 Score=45.28 Aligned_cols=125 Identities=12% Similarity=0.050 Sum_probs=86.3
Q ss_pred HHHHHHHHHcCcceEEEeCCCCC---CHHHHHHHHHHhcCCCCccEEEEeCCCCCCCCCCHHHHhhhcCCCCCcccCCcc
Q psy7981 60 RMKMKAAKEIGIDAQHVKLPRSI---TEIELLSRLKKLNEDPSVHGIIVQMPLDSDNDINAMLVTDSVSPEKDVDGLNTI 136 (216)
Q Consensus 60 ~~k~k~a~~~Gi~~~~~~l~~~~---~~~el~~~I~~lN~D~~V~GIlvqlPL~~P~~id~~~i~~~I~p~KDVDG~~~~ 136 (216)
-+=..++.++|.++.... +.++ .-|.+.+.++-|+.= +|+|++=.|- +-..+.+.+.. + +--+
T Consensus 54 ~SFE~A~~~LGg~~i~l~-~~~ss~~kgEsl~Dt~~vls~y--~D~iviR~~~----~~~~~~~a~~~----~---vPVI 119 (302)
T PRK14805 54 VSFDIGINKLGGHCLYLD-QQNGALGKRESVADFAANLSCW--ADAIVARVFS----HSTIEQLAEHG----S---VPVI 119 (302)
T ss_pred HHHHHHHHHcCCcEEECC-CCcCcCCCCcCHHHHHHHHHHh--CCEEEEeCCC----hhHHHHHHHhC----C---CCEE
Confidence 345789999999887754 2221 124555555555444 8899987664 33333443332 2 4456
Q ss_pred chhHhhcCCCCCcccCCHHH-HHHHHHHhCCCCCCCeEEEecCCCcccHHHHHHhhhCCCEEEEecCCCC
Q psy7981 137 NEGRVAIGDMNGFIPCTPNG-VLELIKRTNVTIAGTNAVVLGRSKIVGTPAAELLKWKHATVTVCHSKTK 205 (216)
Q Consensus 137 n~G~l~~~~~~~~~PcTa~a-v~~lL~~~~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~ATVtichs~T~ 205 (216)
|.|- ....||=+++ ++.+.++.| +++|++|++||-.+.|.+.+..++..-|+.|++|+=.+-
T Consensus 120 Na~~------~~~HPtQaL~Dl~Ti~e~~g-~l~g~kva~vGD~~~v~~S~~~~~~~~g~~v~~~~P~~~ 182 (302)
T PRK14805 120 NALC------DLYHPCQALADFLTLAEQFG-DVSKVKLAYVGDGNNVTHSLMYGAAILGATMTVICPPGH 182 (302)
T ss_pred ECCC------CCCChHHHHHHHHHHHHHhC-CcCCcEEEEEcCCCccHHHHHHHHHHcCCEEEEECCchh
Confidence 6532 2578998887 555556666 699999999999888999999999999999999986653
No 57
>PRK14031 glutamate dehydrogenase; Provisional
Probab=96.43 E-value=0.031 Score=53.18 Aligned_cols=53 Identities=17% Similarity=0.110 Sum_probs=44.7
Q ss_pred CcccCCHHHHHHHHH----HhCCCCCCCeEEEecCCCcccHHHHHHhhhCCCEEEE-ec
Q psy7981 148 GFIPCTPNGVLELIK----RTNVTIAGTNAVVLGRSKIVGTPAAELLKWKHATVTV-CH 201 (216)
Q Consensus 148 ~~~PcTa~av~~lL~----~~~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~ATVti-ch 201 (216)
.--+.|..|++..++ +.|.+++||+|+|.|-++ ||.-.+.+|...||.|+. +.
T Consensus 202 ~r~~aTg~Gv~~~~~~~~~~~g~~l~g~rVaVQGfGN-VG~~aA~~L~e~GAkVVaVSD 259 (444)
T PRK14031 202 IRPEATGYGNIYFLMEMLKTKGTDLKGKVCLVSGSGN-VAQYTAEKVLELGGKVVTMSD 259 (444)
T ss_pred CCCcccHHHHHHHHHHHHHhcCCCcCCCEEEEECCCH-HHHHHHHHHHHCCCEEEEEEC
Confidence 455789999876654 568999999999999865 699999999999999987 55
No 58
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=96.39 E-value=0.0045 Score=55.36 Aligned_cols=53 Identities=30% Similarity=0.382 Sum_probs=44.7
Q ss_pred CCHHH-HHHHHHHhCCCCCCCeEEEecCCCcccHHHHHHhhhCCCEEEEecCCCC
Q psy7981 152 CTPNG-VLELIKRTNVTIAGTNAVVLGRSKIVGTPAAELLKWKHATVTVCHSKTK 205 (216)
Q Consensus 152 cTa~a-v~~lL~~~~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~ATVtichs~T~ 205 (216)
+|+.+ +...++.+++++.|++|+|+|-+. +|+.++..|...|+.|+++.+...
T Consensus 132 ~~Ae~ai~~al~~~~~~l~gk~v~IiG~G~-iG~avA~~L~~~G~~V~v~~R~~~ 185 (287)
T TIGR02853 132 PTAEGAIMMAIEHTDFTIHGSNVMVLGFGR-TGMTIARTFSALGARVFVGARSSA 185 (287)
T ss_pred hHHHHHHHHHHHhcCCCCCCCEEEEEcChH-HHHHHHHHHHHCCCEEEEEeCCHH
Confidence 45554 556677888999999999999988 799999999999999999986543
No 59
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=96.28 E-value=0.069 Score=51.71 Aligned_cols=139 Identities=24% Similarity=0.325 Sum_probs=88.9
Q ss_pred EEeCCCcchHHH-HHHHHHHHHHcCcceEEEeCCCCCCHHHHHHHHHHhcCCCCccEEEEeCCCCCCCCCCHHHHhhhcC
Q psy7981 47 VQVGGREDSNVY-IRMKMKAAKEIGIDAQHVKLPRSITEIELLSRLKKLNEDPSVHGIIVQMPLDSDNDINAMLVTDSVS 125 (216)
Q Consensus 47 I~vg~~~as~~Y-v~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvqlPL~~P~~id~~~i~~~I~ 125 (216)
-.+|+ |-+++. =..--.+.++.|+++....|+- +++.+.++.+.. .++.|.-|.+|. +...-..++.++
T Consensus 256 ~liG~-Pi~hS~SP~ihn~~f~~~gl~~~Y~~~~v----~~l~~~~~~l~~-~~~~G~nVTiP~----K~~v~~~lD~~~ 325 (529)
T PLN02520 256 GIIGK-PVGHSKSPILHNEAFKSVGFNGVYVHLLV----DDLAKFLQTYSS-PDFAGFSCTIPH----KEDALKCCDEVD 325 (529)
T ss_pred EEEcC-CcccccCHHHHHHHHHHCCCCcEEEEeeh----hhHHHHHHHHhh-CCCCEEEECcCC----HHHHHHHhccCC
Confidence 36674 433322 2334567789999999888864 355556655543 579999999997 333334444444
Q ss_pred C-CCCcccCCcc-c---hhHhhcCCCCCcccCCHHHHHHHHHH----------hCCCCCCCeEEEecCCCcccHHHHHHh
Q psy7981 126 P-EKDVDGLNTI-N---EGRVAIGDMNGFIPCTPNGVLELIKR----------TNVTIAGTNAVVLGRSKIVGTPAAELL 190 (216)
Q Consensus 126 p-~KDVDG~~~~-n---~G~l~~~~~~~~~PcTa~av~~lL~~----------~~i~l~Gk~vvViGrS~~VG~Pla~lL 190 (216)
| .+.+-.++.+ + -|++ .|.. ---.|+++.|+. .+.+++||+|+|+|.+ =.|+.++..|
T Consensus 326 ~~A~~iGAVNTvv~~~~~g~l-~G~N-----TD~~G~~~~l~~~~~~~~~~~~~~~~~~~k~vlIlGaG-GagrAia~~L 398 (529)
T PLN02520 326 PIAKSIGAINTIIRRPSDGKL-VGYN-----TDYIGAISAIEDGLRASGSSPASGSPLAGKLFVVIGAG-GAGKALAYGA 398 (529)
T ss_pred HHHHHhCCceEEEEeCCCCEE-EEEc-----ccHHHHHHHHHhhhcccccccccccCCCCCEEEEECCc-HHHHHHHHHH
Confidence 3 1223333322 1 1332 1210 124677777764 2567999999999998 6699999999
Q ss_pred hhCCCEEEEecC
Q psy7981 191 KWKHATVTVCHS 202 (216)
Q Consensus 191 ~~~~ATVtichs 202 (216)
.++|+.|+++.+
T Consensus 399 ~~~G~~V~i~nR 410 (529)
T PLN02520 399 KEKGARVVIANR 410 (529)
T ss_pred HHCCCEEEEEcC
Confidence 999999999865
No 60
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=96.03 E-value=0.041 Score=49.40 Aligned_cols=129 Identities=20% Similarity=0.294 Sum_probs=93.2
Q ss_pred HHHHHHHHcCcceEEEeCCCCCCHHHHHHHHHHhcCCCCccEEEEeCCCCCCCCCCHHHHhhhcCCCCCcccCCccch--
Q psy7981 61 MKMKAAKEIGIDAQHVKLPRSITEIELLSRLKKLNEDPSVHGIIVQMPLDSDNDINAMLVTDSVSPEKDVDGLNTINE-- 138 (216)
Q Consensus 61 ~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvqlPL~~P~~id~~~i~~~I~p~KDVDG~~~~n~-- 138 (216)
.-..+.+.+|+++....+.-. .++|.+.|..+- +..+.|.-|..|+ +.....+++.++|.= .-+...|.
T Consensus 24 ~Hn~~~~~lGl~~~Y~a~~v~--~~~l~~~v~~~~-~~g~~G~NVTiP~----Ke~~~~~lD~l~~~A--~~iGAVNTl~ 94 (283)
T COG0169 24 MHNAAFRALGLDYVYLAFEVP--PEDLPEAVSGIR-ALGFRGLNVTIPF----KEAALPLLDELSPRA--RLIGAVNTLV 94 (283)
T ss_pred HHHHHHHHcCCCceEEEeecC--HHHHHHHHHHHH-hcCCCeeEECCcc----HHHHHHHHhcCCHHH--HHhCCceEEE
Confidence 345678999999888777654 789999999887 8889999999998 333444555555421 22222222
Q ss_pred ----hHhhcCCCCCcccCCHHHHHHHHHHhC--CCCCCCeEEEecCCCcccHHHHHHhhhCCC-EEEEecCCCC
Q psy7981 139 ----GRVAIGDMNGFIPCTPNGVLELIKRTN--VTIAGTNAVVLGRSKIVGTPAAELLKWKHA-TVTVCHSKTK 205 (216)
Q Consensus 139 ----G~l~~~~~~~~~PcTa~av~~lL~~~~--i~l~Gk~vvViGrS~~VG~Pla~lL~~~~A-TVtichs~T~ 205 (216)
|++.-. =--..|+.+.|+.++ .+.+|++|+|+|.+.. +|.++.-|++.|+ .++|+++...
T Consensus 95 ~~~~g~l~G~------NTD~~G~~~~L~~~~~~~~~~~~~vlilGAGGA-arAv~~aL~~~g~~~i~V~NRt~~ 161 (283)
T COG0169 95 REDDGKLRGY------NTDGIGFLRALKEFGLPVDVTGKRVLILGAGGA-ARAVAFALAEAGAKRITVVNRTRE 161 (283)
T ss_pred EccCCEEEEE------cCCHHHHHHHHHhcCCCcccCCCEEEEECCcHH-HHHHHHHHHHcCCCEEEEEeCCHH
Confidence 222211 113589999999987 5677999999999988 8999999999995 6999987443
No 61
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase. Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.
Probab=95.69 E-value=1 Score=40.74 Aligned_cols=132 Identities=18% Similarity=0.164 Sum_probs=88.7
Q ss_pred hHHHHHHHHHHHHHcCcceEEEeCCCCC---CHHHHHHHHHHhcCCCCccEEEEeCCCCCCCCCCHHHHhhhcCCCCCcc
Q psy7981 55 SNVYIRMKMKAAKEIGIDAQHVKLPRSI---TEIELLSRLKKLNEDPSVHGIIVQMPLDSDNDINAMLVTDSVSPEKDVD 131 (216)
Q Consensus 55 s~~Yv~~k~k~a~~~Gi~~~~~~l~~~~---~~~el~~~I~~lN~D~~V~GIlvqlPL~~P~~id~~~i~~~I~p~KDVD 131 (216)
|-.---+=..++.++|..+....-+.++ ..|.+.+..+-|+.= +|+|.+=.|- |-....+.+..
T Consensus 50 STRTR~SFe~A~~~LGg~~i~l~~~~~s~~~kgEsi~Dta~vls~y--~D~iviR~~~----~~~~~~~a~~s------- 116 (301)
T TIGR00670 50 STRTRLSFETAMKRLGGDVVNFSDSETSSVAKGETLADTIKTLSGY--SDAIVIRHPL----EGAARLAAEVS------- 116 (301)
T ss_pred CchhHhHHHHHHHHcCCcEEEcCCCCcccCCCCcCHHHHHHHHHHh--CCEEEEECCc----hhHHHHHHhhC-------
Confidence 4333344578999999988766441221 224444544444433 8899998663 44444544432
Q ss_pred cCCccchhHhhcCCCCCcccCCHHH-HHHHHHHhCCCCCCCeEEEecCC--CcccHHHHHHhhhCCCEEEEecCCCC
Q psy7981 132 GLNTINEGRVAIGDMNGFIPCTPNG-VLELIKRTNVTIAGTNAVVLGRS--KIVGTPAAELLKWKHATVTVCHSKTK 205 (216)
Q Consensus 132 G~~~~n~G~l~~~~~~~~~PcTa~a-v~~lL~~~~i~l~Gk~vvViGrS--~~VG~Pla~lL~~~~ATVtichs~T~ 205 (216)
++-.+|.|- | ....||=+++ ++.+.+++| +++|++|++||-. +.|-+.+..++..-|+.|++|+=.+-
T Consensus 117 ~vPVINa~~---g--~~~HPtQ~LaDl~Ti~e~~g-~l~g~~va~vGD~~~~~v~~Sl~~~~a~~g~~v~~~~P~~~ 187 (301)
T TIGR00670 117 EVPVINAGD---G--SNQHPTQTLLDLYTIYEEFG-RLDGLKIALVGDLKYGRTVHSLAEALTRFGVEVYLISPEEL 187 (301)
T ss_pred CCCEEeCCC---C--CCCCcHHHHHHHHHHHHHhC-CCCCCEEEEEccCCCCcHHHHHHHHHHHcCCEEEEECCccc
Confidence 244566532 1 2578998888 555556777 6999999999987 68889999999999999999997664
No 62
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=95.68 E-value=0.023 Score=47.09 Aligned_cols=46 Identities=30% Similarity=0.330 Sum_probs=39.1
Q ss_pred HHHHHHHhCCCCCCCeEEEecCCCcccHHHHHHhhhCCCEEEEecC
Q psy7981 157 VLELIKRTNVTIAGTNAVVLGRSKIVGTPAAELLKWKHATVTVCHS 202 (216)
Q Consensus 157 v~~lL~~~~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~ATVtichs 202 (216)
+.+.|++++++++|++++|+|-+.-+|+.++..|.+.++.|+++.+
T Consensus 15 ~~~~l~~~~~~l~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R 60 (194)
T cd01078 15 AGKALELMGKDLKGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGR 60 (194)
T ss_pred HHHHHHHhCcCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcC
Confidence 3344455678999999999999889999999999999999999854
No 63
>PLN02342 ornithine carbamoyltransferase
Probab=95.61 E-value=0.91 Score=41.99 Aligned_cols=126 Identities=13% Similarity=0.022 Sum_probs=85.7
Q ss_pred HHHHHHHHHcCcceEEEeCCCC--CCHHHHHHHHHHhcCCCCccEEEEeCCCCCCCCCCHHHHhhhcCCCCCcccCCccc
Q psy7981 60 RMKMKAAKEIGIDAQHVKLPRS--ITEIELLSRLKKLNEDPSVHGIIVQMPLDSDNDINAMLVTDSVSPEKDVDGLNTIN 137 (216)
Q Consensus 60 ~~k~k~a~~~Gi~~~~~~l~~~--~~~~el~~~I~~lN~D~~V~GIlvqlPL~~P~~id~~~i~~~I~p~KDVDG~~~~n 137 (216)
-+=..++.++|.++....-.+. ..-|.+.+.++-|..= +|+|++=.|- +-..+.+.+.. ++-.+|
T Consensus 101 ~SFE~A~~~LGg~~i~l~~~~ss~~kGESl~DTarvLs~y--~D~IviR~~~----~~~~~~la~~~-------~vPVIN 167 (348)
T PLN02342 101 VSFETGFFLLGGHALYLGPDDIQLGKREETRDIARVLSRY--NDIIMARVFA----HQDVLDLAEYS-------SVPVIN 167 (348)
T ss_pred HHHHHHHHHcCCcEEEeCcccccCCCCcCHHHHHHHHHHh--CCEEEEeCCC----hHHHHHHHHhC-------CCCEEE
Confidence 3447789999999877632221 1224455555555443 7899988664 33333443322 244566
Q ss_pred hhHhhcCCCCCcccCCHHH-HHHHHHHhCCCCCCCeEEEecCCCcccHHHHHHhhhCCCEEEEecCCCC
Q psy7981 138 EGRVAIGDMNGFIPCTPNG-VLELIKRTNVTIAGTNAVVLGRSKIVGTPAAELLKWKHATVTVCHSKTK 205 (216)
Q Consensus 138 ~G~l~~~~~~~~~PcTa~a-v~~lL~~~~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~ATVtichs~T~ 205 (216)
.| + ....||=+++ ++.+.++.| +++|++|++||-.+.|=+.+..++..-|+.|++|+=.+-
T Consensus 168 A~----~--~~~HPtQaLaDl~Ti~e~~G-~l~glkva~vGD~~nva~Sli~~~~~~G~~v~~~~P~~~ 229 (348)
T PLN02342 168 GL----T--DYNHPCQIMADALTIIEHIG-RLEGTKVVYVGDGNNIVHSWLLLAAVLPFHFVCACPKGY 229 (348)
T ss_pred CC----C--CCCChHHHHHHHHHHHHHhC-CcCCCEEEEECCCchhHHHHHHHHHHcCCEEEEECCccc
Confidence 52 1 2579998877 555666777 699999999999888999999999999999999987663
No 64
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=95.55 E-value=0.03 Score=49.53 Aligned_cols=55 Identities=27% Similarity=0.244 Sum_probs=46.5
Q ss_pred CcccCCHHHHHHHHH----HhCCCCCCCeEEEecCCCcccHHHHHHhhhCCCEEE-EecCC
Q psy7981 148 GFIPCTPNGVLELIK----RTNVTIAGTNAVVLGRSKIVGTPAAELLKWKHATVT-VCHSK 203 (216)
Q Consensus 148 ~~~PcTa~av~~lL~----~~~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~ATVt-ichs~ 203 (216)
..-+.|..|++..++ +.+.+++|++|+|.|-++ ||.-++.+|...|+.|+ +|.+.
T Consensus 12 gR~~aTg~Gv~~~~~~~~~~~~~~l~g~~vaIqGfGn-VG~~~a~~L~e~GakvvaVsD~~ 71 (254)
T cd05313 12 IRPEATGYGLVYFVEEMLKDRNETLKGKRVAISGSGN-VAQYAAEKLLELGAKVVTLSDSK 71 (254)
T ss_pred CCCchhHHHHHHHHHHHHHhcCCCcCCCEEEEECCCH-HHHHHHHHHHHCCCEEEEEECCC
Confidence 456889999877665 458999999999999876 59999999999999988 88754
No 65
>PRK01713 ornithine carbamoyltransferase; Provisional
Probab=95.32 E-value=1.2 Score=40.79 Aligned_cols=123 Identities=14% Similarity=0.109 Sum_probs=85.2
Q ss_pred HHHHHHHHcCcceEEEeCCCCC----CHHHHHHHHHHhcCCCCccEEEEeCCCCCCCCCCHHHHhhhcCCCCCcccCCcc
Q psy7981 61 MKMKAAKEIGIDAQHVKLPRSI----TEIELLSRLKKLNEDPSVHGIIVQMPLDSDNDINAMLVTDSVSPEKDVDGLNTI 136 (216)
Q Consensus 61 ~k~k~a~~~Gi~~~~~~l~~~~----~~~el~~~I~~lN~D~~V~GIlvqlPL~~P~~id~~~i~~~I~p~KDVDG~~~~ 136 (216)
+=..++.++|.++... +.+. .-|.+.+.++-|+.= +|+|.+-.|- +-..+.+.+.. + +-.+
T Consensus 63 SFe~A~~~LGg~~i~l--~~~~ss~~kgEsl~DTarvls~y--~D~iv~R~~~----~~~~~~~a~~~----~---vPVI 127 (334)
T PRK01713 63 AFEVAAYDQGAQVTYI--DPNSSQIGHKESMKDTARVLGRM--YDAIEYRGFK----QSIVNELAEYA----G---VPVF 127 (334)
T ss_pred HHHHHHHHcCCeEEEc--CCccccCCCCcCHHHHHHHHHHh--CCEEEEEcCc----hHHHHHHHHhC----C---CCEE
Confidence 4467889999998765 3221 235566666666554 8899998664 33333443332 2 3445
Q ss_pred chhHhhcCCCCCcccCCHHH-HHHHHHHhCCCCCCCeEEEecCC-CcccHHHHHHhhhCCCEEEEecCCC
Q psy7981 137 NEGRVAIGDMNGFIPCTPNG-VLELIKRTNVTIAGTNAVVLGRS-KIVGTPAAELLKWKHATVTVCHSKT 204 (216)
Q Consensus 137 n~G~l~~~~~~~~~PcTa~a-v~~lL~~~~i~l~Gk~vvViGrS-~~VG~Pla~lL~~~~ATVtichs~T 204 (216)
|.| + ....||=+++ ++.+.++.|-+++|++|++||-. +.|.+.+..++..-|+.|++|+=.+
T Consensus 128 Na~----~--~~~HPtQaL~Dl~Ti~e~~g~~l~gl~ia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~ 191 (334)
T PRK01713 128 NGL----T--DEFHPTQMLADVLTMIENCDKPLSEISYVYIGDARNNMGNSLLLIGAKLGMDVRICAPKA 191 (334)
T ss_pred ECC----C--CCCChHHHHHHHHHHHHHcCCCcCCcEEEEECCCccCHHHHHHHHHHHcCCEEEEECCch
Confidence 642 1 2678998887 56777777767999999999974 4589999999999999999998655
No 66
>PRK12562 ornithine carbamoyltransferase subunit F; Provisional
Probab=95.32 E-value=1.7 Score=39.98 Aligned_cols=131 Identities=13% Similarity=0.043 Sum_probs=88.6
Q ss_pred chHHHHHHHHHHHHHcCcceEEEeCCCCC---CHHHHHHHHHHhcCCCCccEEEEeCCCCCCCCCCHHHHhhhcCCCCCc
Q psy7981 54 DSNVYIRMKMKAAKEIGIDAQHVKLPRSI---TEIELLSRLKKLNEDPSVHGIIVQMPLDSDNDINAMLVTDSVSPEKDV 130 (216)
Q Consensus 54 as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~---~~~el~~~I~~lN~D~~V~GIlvqlPL~~P~~id~~~i~~~I~p~KDV 130 (216)
.|-----+=..+|.++|..+....- .++ .-|.+.+.++-|+.= +|+|++-.|- +-..+.+.+.. +
T Consensus 55 pSTRTR~SFE~A~~~LGg~~i~l~~-~~s~~~kgEsl~Dtarvls~y--~D~iviR~~~----~~~~~~~a~~~----~- 122 (334)
T PRK12562 55 DSTRTRCSFEVAAYDQGARVTYLGP-SGSQIGHKESIKDTARVLGRM--YDGIQYRGHG----QEVVETLAEYA----G- 122 (334)
T ss_pred CCchhHHHHHHHHHHcCCeEEEeCC-ccccCCCCcCHHHHHHHHHHh--CCEEEEECCc----hHHHHHHHHhC----C-
Confidence 3333333457889999999886642 221 235566666666554 8899998764 32333443332 2
Q ss_pred ccCCccchhHhhcCCCCCcccCCHHH-HHHHHHHhCC-CCCCCeEEEecCC-CcccHHHHHHhhhCCCEEEEecCCC
Q psy7981 131 DGLNTINEGRVAIGDMNGFIPCTPNG-VLELIKRTNV-TIAGTNAVVLGRS-KIVGTPAAELLKWKHATVTVCHSKT 204 (216)
Q Consensus 131 DG~~~~n~G~l~~~~~~~~~PcTa~a-v~~lL~~~~i-~l~Gk~vvViGrS-~~VG~Pla~lL~~~~ATVtichs~T 204 (216)
+-.+|.| + ....||=+++ ++.+.+++|- .++|+++++||-. +.|.+.+..++..-|+.|++|+=.+
T Consensus 123 --vPVINa~----~--~~~HPtQaLaDl~Ti~e~~g~~~l~gl~va~vGD~~~~v~~S~~~~~~~~G~~v~~~~P~~ 191 (334)
T PRK12562 123 --VPVWNGL----T--NEFHPTQLLADLLTMQEHLPGKAFNEMTLVYAGDARNNMGNSMLEAAALTGLDLRLVAPQA 191 (334)
T ss_pred --CCEEECC----C--CCCChHHHHHHHHHHHHHhCCCCcCCcEEEEECCCCCCHHHHHHHHHHHcCCEEEEECCcc
Confidence 3456653 1 2578998877 5556677764 5899999999974 4589999999999999999998766
No 67
>PRK02255 putrescine carbamoyltransferase; Provisional
Probab=95.31 E-value=1.4 Score=40.53 Aligned_cols=125 Identities=14% Similarity=0.078 Sum_probs=86.3
Q ss_pred HHHHHHHHcCcceEEEeCCCCC---CHHHHHHHHHHhcCCCCccEEEEeCCCCCCCCCCHHHHhhhcCCCCCcccCCccc
Q psy7981 61 MKMKAAKEIGIDAQHVKLPRSI---TEIELLSRLKKLNEDPSVHGIIVQMPLDSDNDINAMLVTDSVSPEKDVDGLNTIN 137 (216)
Q Consensus 61 ~k~k~a~~~Gi~~~~~~l~~~~---~~~el~~~I~~lN~D~~V~GIlvqlPL~~P~~id~~~i~~~I~p~KDVDG~~~~n 137 (216)
+=..++.++|.++....- .++ .-|.+.+.++-|+.= +|+|++-.|- |-..+.+.+.. ++-.+|
T Consensus 59 SFe~A~~~LGg~~i~l~~-~~ss~~kgEsl~Dtarvls~y--~D~iviR~~~----~~~~~~~a~~~-------~vPVIN 124 (338)
T PRK02255 59 SFETAMTQLGGHAQYLAP-GQIQLGGHESLEDTARVLSRL--VDIIMARVDR----HQTVVELAKYA-------TVPVIN 124 (338)
T ss_pred HHHHHHHHcCCeEEEeCc-ccccCCCCcCHHHHHHHHHHh--CcEEEEecCC----hHHHHHHHHhC-------CCCEEE
Confidence 457889999998877652 221 225566666666554 7898887653 44444443322 234566
Q ss_pred hhHhhcCCCCCcccCCHHH-HHHHHHHhC--CCCCCCeEEEecCCCcccHHHHHHhhhCCCEEEEecCCCC
Q psy7981 138 EGRVAIGDMNGFIPCTPNG-VLELIKRTN--VTIAGTNAVVLGRSKIVGTPAAELLKWKHATVTVCHSKTK 205 (216)
Q Consensus 138 ~G~l~~~~~~~~~PcTa~a-v~~lL~~~~--i~l~Gk~vvViGrS~~VG~Pla~lL~~~~ATVtichs~T~ 205 (216)
.| + ....||=+++ ++.+.+++| -+++|++|++||-.+.|.+.+..++..-|+.|++|+=.+-
T Consensus 125 a~----~--~~~HPtQaLaDl~Ti~e~~g~g~~l~glkv~~vGD~~~v~~Sl~~~~~~~g~~v~~~~P~~~ 189 (338)
T PRK02255 125 GM----S--DYNHPTQELGDLFTMIEHLPEGKKLEDCKVVFVGDATQVCVSLMFIATKMGMDFVHFGPKGY 189 (338)
T ss_pred CC----C--CCCChHHHHHHHHHHHHHhCCCCCCCCCEEEEECCCchHHHHHHHHHHhCCCEEEEECCCcc
Confidence 32 1 2579998877 556667775 3699999999999888999999999989999999986653
No 68
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=95.29 E-value=0.023 Score=47.15 Aligned_cols=49 Identities=35% Similarity=0.447 Sum_probs=34.3
Q ss_pred CHHHHHHHH-HHhCCCCCCCeEEEecCCCcccHHHHHHhhhCCCEEEEecC
Q psy7981 153 TPNGVLELI-KRTNVTIAGTNAVVLGRSKIVGTPAAELLKWKHATVTVCHS 202 (216)
Q Consensus 153 Ta~av~~lL-~~~~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~ATVtichs 202 (216)
|-+++++-+ +.+++.+.||+|+|+|-+.+ |+.+|..|...||.|+|+-.
T Consensus 5 ~g~S~~d~i~r~t~~~l~Gk~vvV~GYG~v-G~g~A~~lr~~Ga~V~V~e~ 54 (162)
T PF00670_consen 5 TGQSLVDGIMRATNLMLAGKRVVVIGYGKV-GKGIARALRGLGARVTVTEI 54 (162)
T ss_dssp HHHHHHHHHHHHH-S--TTSEEEEE--SHH-HHHHHHHHHHTT-EEEEE-S
T ss_pred cchhHHHHHHhcCceeeCCCEEEEeCCCcc-cHHHHHHHhhCCCEEEEEEC
Confidence 334555444 45799999999999999986 99999999999999999964
No 69
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=95.17 E-value=0.052 Score=46.97 Aligned_cols=55 Identities=29% Similarity=0.336 Sum_probs=45.9
Q ss_pred CcccCCHHHHHHHHH----HhCCCCCCCeEEEecCCCcccHHHHHHhhhCCCEEE-EecCC
Q psy7981 148 GFIPCTPNGVLELIK----RTNVTIAGTNAVVLGRSKIVGTPAAELLKWKHATVT-VCHSK 203 (216)
Q Consensus 148 ~~~PcTa~av~~lL~----~~~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~ATVt-ichs~ 203 (216)
...|.|+.|+...++ +.+.++.|++|+|.|- ..||+-++.+|..+|++|+ ++.+.
T Consensus 5 ~~~~~Tg~Gv~~~~~~~~~~~~~~l~~~~v~I~G~-G~VG~~~a~~L~~~g~~vv~v~D~~ 64 (227)
T cd01076 5 GREEATGRGVAYATREALKKLGIGLAGARVAIQGF-GNVGSHAARFLHEAGAKVVAVSDSD 64 (227)
T ss_pred CCCccchHHHHHHHHHHHHhcCCCccCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEECCC
Confidence 446789999877765 4577899999999996 5569999999999999998 88773
No 70
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=95.01 E-value=0.039 Score=52.20 Aligned_cols=52 Identities=38% Similarity=0.385 Sum_probs=45.7
Q ss_pred cCCHHHHHHHHHHh-CCCCCCCeEEEecCCCcccHHHHHHhhhCCCEEEEecCC
Q psy7981 151 PCTPNGVLELIKRT-NVTIAGTNAVVLGRSKIVGTPAAELLKWKHATVTVCHSK 203 (216)
Q Consensus 151 PcTa~av~~lL~~~-~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~ATVtichs~ 203 (216)
-+|.++++.-+++. ++.+.|++|+|+|.+. +|+-++..|...|+.|++|...
T Consensus 192 ~gt~~s~~~ai~rat~~~l~Gk~VlViG~G~-IG~~vA~~lr~~Ga~ViV~d~d 244 (425)
T PRK05476 192 YGTGESLLDGIKRATNVLIAGKVVVVAGYGD-VGKGCAQRLRGLGARVIVTEVD 244 (425)
T ss_pred HHHHhhhHHHHHHhccCCCCCCEEEEECCCH-HHHHHHHHHHhCCCEEEEEcCC
Confidence 46889998876666 8889999999999985 7999999999999999999754
No 71
>TIGR00658 orni_carb_tr ornithine carbamoyltransferase. Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily.
Probab=94.92 E-value=1.3 Score=39.96 Aligned_cols=127 Identities=16% Similarity=0.115 Sum_probs=86.4
Q ss_pred HHHHHHHHHcCcceEEEeCCCC--CCHHHHHHHHHHhcCCCCccEEEEeCCCCCCCCCCHHHHhhhcCCCCCcccCCccc
Q psy7981 60 RMKMKAAKEIGIDAQHVKLPRS--ITEIELLSRLKKLNEDPSVHGIIVQMPLDSDNDINAMLVTDSVSPEKDVDGLNTIN 137 (216)
Q Consensus 60 ~~k~k~a~~~Gi~~~~~~l~~~--~~~~el~~~I~~lN~D~~V~GIlvqlPL~~P~~id~~~i~~~I~p~KDVDG~~~~n 137 (216)
-+=..++.++|.++....-... ...|.+.+.+.-|+.= +|+|++-.|- +-..+.+.+.. ++--+|
T Consensus 55 ~SFe~A~~~LGg~~i~l~~~~ss~~kgEsl~Dt~~vls~y--~D~iv~R~~~----~~~~~~~a~~~-------~vPVIN 121 (304)
T TIGR00658 55 VSFEVAAYQLGGHPLYLNPNDLQLGRGESIKDTARVLSRY--VDGIMARVYK----HEDVEELAKYA-------SVPVIN 121 (304)
T ss_pred HHHHHHHHHcCCCEEEeCCccccCCCCCCHHHHHHHHHHh--CCEEEEECCC----hHHHHHHHHhC-------CCCEEE
Confidence 3447889999998887643221 1124555666555544 7788888664 33333443332 234567
Q ss_pred hhHhhcCCCCCcccCCHHH-HHHHHHHhCCCCCCCeEEEecCCCcccHHHHHHhhhCCCEEEEecCCCCC
Q psy7981 138 EGRVAIGDMNGFIPCTPNG-VLELIKRTNVTIAGTNAVVLGRSKIVGTPAAELLKWKHATVTVCHSKTKN 206 (216)
Q Consensus 138 ~G~l~~~~~~~~~PcTa~a-v~~lL~~~~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~ATVtichs~T~~ 206 (216)
.| + ....||=+++ ++.+.++.| .++|.+|++||....|-+.+..+|..-|+.|++||=.+-.
T Consensus 122 a~----~--~~~HPtQaL~Dl~Ti~e~~g-~l~g~~v~~vGd~~~v~~Sl~~~l~~~g~~v~~~~P~~~~ 184 (304)
T TIGR00658 122 GL----T--DLFHPCQALADLLTIIEHFG-KLKGVKVVYVGDGNNVCNSLMLAGAKLGMDVVVATPEGYE 184 (304)
T ss_pred CC----C--CCCChHHHHHHHHHHHHHhC-CCCCcEEEEEeCCCchHHHHHHHHHHcCCEEEEECCchhc
Confidence 53 1 2678997777 555556666 4999999999997778899999999999999999966543
No 72
>PRK03515 ornithine carbamoyltransferase subunit I; Provisional
Probab=94.92 E-value=0.99 Score=41.47 Aligned_cols=137 Identities=14% Similarity=0.045 Sum_probs=90.4
Q ss_pred EEEEEeCCCcchHHHHHHHHHHHHHcCcceEEEeCCCCC----CHHHHHHHHHHhcCCCCccEEEEeCCCCCCCCCCHHH
Q psy7981 44 LAIVQVGGREDSNVYIRMKMKAAKEIGIDAQHVKLPRSI----TEIELLSRLKKLNEDPSVHGIIVQMPLDSDNDINAML 119 (216)
Q Consensus 44 LaiI~vg~~~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~----~~~el~~~I~~lN~D~~V~GIlvqlPL~~P~~id~~~ 119 (216)
++.+..- .|-.---+=..++.++|..+.... .+. ..|.+.+.++-|+.= +|+|++-.|- |-..+.
T Consensus 48 l~~lF~e---pSTRTR~SFe~A~~~LGg~~i~l~--~~~s~~~kgEsl~Dtarvls~y--~D~Iv~R~~~----~~~~~~ 116 (336)
T PRK03515 48 IALIFEK---DSTRTRCSFEVAAYDQGARVTYLG--PSGSQIGHKESIKDTARVLGRM--YDGIQYRGYG----QEIVET 116 (336)
T ss_pred EEEEecC---CChhHHHHHHHHHHHcCCcEEEeC--CccccCCCCCCHHHHHHHHHHh--CcEEEEEeCC----hHHHHH
Confidence 4444433 333333344778999999987753 222 225566666666544 7899998664 333444
Q ss_pred HhhhcCCCCCcccCCccchhHhhcCCCCCcccCCHHH-HHHHHHHhCC-CCCCCeEEEecCC-CcccHHHHHHhhhCCCE
Q psy7981 120 VTDSVSPEKDVDGLNTINEGRVAIGDMNGFIPCTPNG-VLELIKRTNV-TIAGTNAVVLGRS-KIVGTPAAELLKWKHAT 196 (216)
Q Consensus 120 i~~~I~p~KDVDG~~~~n~G~l~~~~~~~~~PcTa~a-v~~lL~~~~i-~l~Gk~vvViGrS-~~VG~Pla~lL~~~~AT 196 (216)
+.+.. + +-.+|.| + ....||=+++ ++.+.++.|- +++|++|+.||-. +.|.+.+..++..-|+.
T Consensus 117 ~a~~~----~---vPVINa~----~--~~~HPtQaLaDl~Ti~e~~g~~~l~g~~ia~vGD~~~~v~~Sl~~~~~~~g~~ 183 (336)
T PRK03515 117 LAEYA----G---VPVWNGL----T--NEFHPTQLLADLLTMQEHLPGKAFNEMTLAYAGDARNNMGNSLLEAAALTGLD 183 (336)
T ss_pred HHHhC----C---CCEEECC----C--CCCChHHHHHHHHHHHHHhCCCCcCCCEEEEeCCCcCcHHHHHHHHHHHcCCE
Confidence 44332 2 3345642 1 2578998887 6666666653 6999999999974 45899999999999999
Q ss_pred EEEecCCC
Q psy7981 197 VTVCHSKT 204 (216)
Q Consensus 197 Vtichs~T 204 (216)
|++|+=..
T Consensus 184 v~~~~P~~ 191 (336)
T PRK03515 184 LRLVAPKA 191 (336)
T ss_pred EEEECCch
Confidence 99998554
No 73
>PRK00856 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional
Probab=94.82 E-value=0.58 Score=42.35 Aligned_cols=128 Identities=20% Similarity=0.226 Sum_probs=85.0
Q ss_pred hHHHHHHHHHHHHHcCcceEEEeCC-----CCCCHHHHHHHHHHhcCCCCccEEEEeCCCCCCCCCCHHHHhhhcCCCCC
Q psy7981 55 SNVYIRMKMKAAKEIGIDAQHVKLP-----RSITEIELLSRLKKLNEDPSVHGIIVQMPLDSDNDINAMLVTDSVSPEKD 129 (216)
Q Consensus 55 s~~Yv~~k~k~a~~~Gi~~~~~~l~-----~~~~~~el~~~I~~lN~D~~V~GIlvqlPL~~P~~id~~~i~~~I~p~KD 129 (216)
|-.---+=..+|.++|.++....-. ...+.+|....+..++ +|+|.+=.|- |-..+++.+..
T Consensus 56 STRTR~SFe~A~~~LGg~~i~l~~~~~~~~kgEs~~Dta~vls~y~----~D~iv~R~~~----~~~~~~~a~~~----- 122 (305)
T PRK00856 56 STRTRLSFELAAKRLGADVINFSASTSSVSKGETLADTIRTLSAMG----ADAIVIRHPQ----SGAARLLAESS----- 122 (305)
T ss_pred CcchHHHHHHHHHHcCCcEEEeCCCcccCCCCcCHHHHHHHHHhcC----CCEEEEeCCC----hHHHHHHHHHC-----
Confidence 4433445578899999988655322 2223444445554443 6688887654 33333443321
Q ss_pred cccCCccchhHhhcCCCCCcccCCHHH-HHHHHHHhCCCCCCCeEEEecCC--CcccHHHHHHhhhCCCEEEEecCC
Q psy7981 130 VDGLNTINEGRVAIGDMNGFIPCTPNG-VLELIKRTNVTIAGTNAVVLGRS--KIVGTPAAELLKWKHATVTVCHSK 203 (216)
Q Consensus 130 VDG~~~~n~G~l~~~~~~~~~PcTa~a-v~~lL~~~~i~l~Gk~vvViGrS--~~VG~Pla~lL~~~~ATVtichs~ 203 (216)
.+-.+|.|- | ....||=+.| ++.+.+++| +++|++|++||-. +.|...+..++..-|++|++|+=.
T Consensus 123 --~vPVINa~~---g--~~~HPtQ~LaDl~Ti~e~~G-~l~g~kv~~vGD~~~~~v~~Sl~~~~~~~g~~~~~~~P~ 191 (305)
T PRK00856 123 --DVPVINAGD---G--SHQHPTQALLDLLTIREEFG-RLEGLKVAIVGDIKHSRVARSNIQALTRLGAEVRLIAPP 191 (305)
T ss_pred --CCCEEECCC---C--CCCCcHHHHHHHHHHHHHhC-CCCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEECCc
Confidence 244456532 1 2578998888 667777777 5999999999876 678899999999999999999843
No 74
>PRK09414 glutamate dehydrogenase; Provisional
Probab=94.75 E-value=0.11 Score=49.47 Aligned_cols=54 Identities=24% Similarity=0.231 Sum_probs=44.8
Q ss_pred CcccCCHHHHHHHHH----HhCCCCCCCeEEEecCCCcccHHHHHHhhhCCCEEEEe-cC
Q psy7981 148 GFIPCTPNGVLELIK----RTNVTIAGTNAVVLGRSKIVGTPAAELLKWKHATVTVC-HS 202 (216)
Q Consensus 148 ~~~PcTa~av~~lL~----~~~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~ATVtic-hs 202 (216)
.--+.|..|++..++ +.+.+++|++|+|.|-++ ||.-++.+|...||+|+.+ .+
T Consensus 206 gr~~aTg~Gv~~~~~~~~~~~~~~l~g~rVaIqGfGn-VG~~~A~~L~~~GakVVavsDs 264 (445)
T PRK09414 206 IRTEATGYGLVYFAEEMLKARGDSFEGKRVVVSGSGN-VAIYAIEKAQQLGAKVVTCSDS 264 (445)
T ss_pred CCCCcccHHHHHHHHHHHHhcCCCcCCCEEEEECCCH-HHHHHHHHHHHCCCEEEEEEcC
Confidence 345789998776665 458999999999999965 5999999999999998876 53
No 75
>PRK10727 DNA-binding transcriptional regulator GalR; Provisional
Probab=94.66 E-value=2.7 Score=37.16 Aligned_cols=93 Identities=10% Similarity=0.047 Sum_probs=55.2
Q ss_pred hhcccHH-HHHHHHHHHHHHHHHHH--------hcCCCCCceEEEEEeC-CCcchHHHHHHHHHHHHHcCcceEEEeCCC
Q psy7981 11 QILSGTA-VSGDIREGLKERVKKLK--------ERLPDFEPGLAIVQVG-GREDSNVYIRMKMKAAKEIGIDAQHVKLPR 80 (216)
Q Consensus 11 ~il~Gk~-vA~~i~~~ik~~v~~l~--------~~~~~~~P~LaiI~vg-~~~as~~Yv~~k~k~a~~~Gi~~~~~~l~~ 80 (216)
++|+|+. |+++-++.+.+.+++|- .-..+..-.+++|.-. .++--....+...+.|++.|..........
T Consensus 20 rvLn~~~~Vs~~tr~rV~~~a~elgY~pn~~ar~l~~~~~~~Igvi~~~~~~~f~~~~~~gi~~~~~~~g~~~~~~~~~~ 99 (343)
T PRK10727 20 RVINNSPKASEASRLAVHSAMESLSYHPNANARALAQQSTETVGLVVGDVSDPFFGAMVKAVEQVAYHTGNFLLIGNGYH 99 (343)
T ss_pred HHhCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHhhhhCCCCeEEEEeCCCCcchHHHHHHHHHHHHHHcCCEEEEEeCCC
Confidence 6788875 88888887777776661 0000122244554422 233333445777889999998876554332
Q ss_pred CCCHHHHHHHHHHhcCCCCccEEEEe
Q psy7981 81 SITEIELLSRLKKLNEDPSVHGIIVQ 106 (216)
Q Consensus 81 ~~~~~el~~~I~~lN~D~~V~GIlvq 106 (216)
+.++..+.++.+.. .+|+||++.
T Consensus 100 --~~~~~~~~i~~l~~-~~vdgiIi~ 122 (343)
T PRK10727 100 --NEQKERQAIEQLIR-HRCAALVVH 122 (343)
T ss_pred --CHHHHHHHHHHHHh-cCCCEEEEe
Confidence 33444455666543 469999996
No 76
>PRK07200 aspartate/ornithine carbamoyltransferase family protein; Validated
Probab=94.53 E-value=0.7 Score=43.43 Aligned_cols=136 Identities=15% Similarity=0.113 Sum_probs=85.9
Q ss_pred HHHHHHHHcCcceEEEeCCCC--CCHHHHHHHHHHhcCCCCccEEEEeCCC-CCCCCCCHHHHhhhcC--CCCCc-ccCC
Q psy7981 61 MKMKAAKEIGIDAQHVKLPRS--ITEIELLSRLKKLNEDPSVHGIIVQMPL-DSDNDINAMLVTDSVS--PEKDV-DGLN 134 (216)
Q Consensus 61 ~k~k~a~~~Gi~~~~~~l~~~--~~~~el~~~I~~lN~D~~V~GIlvqlPL-~~P~~id~~~i~~~I~--p~KDV-DG~~ 134 (216)
+=.-++.++|.++....-.+. ..-|-+.+.++-|+.= +|+|.+=.|- ++..+-..+++.+... -.++| -..-
T Consensus 76 SFE~A~~~LGg~~i~l~~~~ss~~kGEsl~DTarvLs~y--~D~IviR~~~~~g~~~~~~~ela~~~~~~~~~~~~~~~p 153 (395)
T PRK07200 76 SYASACNLLGLEVQDLDEGKSQIAHGETVRETANMISFM--ADVIGIRDDMYIGKGNAYMREVGAAVDDGYKQGVLPQRP 153 (395)
T ss_pred HHHHHHHHcCCCEEEcCCccccCCCCCCHHHHHHHHHHh--CCEEEEecCcccccccHHHHHHHHHhhhhcccccccCCC
Confidence 447889999999877643211 0124455555555443 8899998773 1112322233332221 01121 1222
Q ss_pred c-cchhHhhcCCCCCcccCCHHH-HHHHHHHhCC--CCCCCeEEEe-------cCCCcccHHHHHHhhhCCCEEEEecCC
Q psy7981 135 T-INEGRVAIGDMNGFIPCTPNG-VLELIKRTNV--TIAGTNAVVL-------GRSKIVGTPAAELLKWKHATVTVCHSK 203 (216)
Q Consensus 135 ~-~n~G~l~~~~~~~~~PcTa~a-v~~lL~~~~i--~l~Gk~vvVi-------GrS~~VG~Pla~lL~~~~ATVtichs~ 203 (216)
| +|.| + ....||=+++ ++.+.+++|- .++|++|+++ ||.+.|.+.+..+|..-|+.|++|+=.
T Consensus 154 PVINa~----~--~~~HPtQaLaDl~TI~E~~G~~~~l~g~kVaivg~~~~~~g~~~~Va~Sl~~~~~~lG~~v~~~~P~ 227 (395)
T PRK07200 154 TLVNLQ----C--DIDHPTQSMADLLHLIEHFGGLENLKGKKIAMTWAYSPSYGKPLSVPQGIIGLMTRFGMDVTLAHPE 227 (395)
T ss_pred eEEECC----C--CCCCcHHHHHHHHHHHHHhCCCcccCCCEEEEEeccccccCCcchHHHHHHHHHHHcCCEEEEECCC
Confidence 2 6752 2 3678998888 5667777774 3899999988 577788899999998899999999876
Q ss_pred C
Q psy7981 204 T 204 (216)
Q Consensus 204 T 204 (216)
.
T Consensus 228 ~ 228 (395)
T PRK07200 228 G 228 (395)
T ss_pred c
Confidence 5
No 77
>PRK10423 transcriptional repressor RbsR; Provisional
Probab=94.52 E-value=0.34 Score=42.34 Aligned_cols=88 Identities=16% Similarity=0.257 Sum_probs=58.5
Q ss_pred hhcccHH-HHHHHHHHHHHHHHHHHhcCCCCCc-------------eEEEEEeC-CCcchHHHHHHHHHHHHHcCcceEE
Q psy7981 11 QILSGTA-VSGDIREGLKERVKKLKERLPDFEP-------------GLAIVQVG-GREDSNVYIRMKMKAAKEIGIDAQH 75 (216)
Q Consensus 11 ~il~Gk~-vA~~i~~~ik~~v~~l~~~~~~~~P-------------~LaiI~vg-~~~as~~Yv~~k~k~a~~~Gi~~~~ 75 (216)
++|+|+. |+++.++++.+.++++ |..| .+++|.-. +++--..+.+...+.|++.|..+..
T Consensus 17 rvLn~~~~vs~~tr~rV~~~a~~l-----gY~pn~~a~~l~~~~~~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~ 91 (327)
T PRK10423 17 HVINKDRFVSEAITAKVEAAIKEL-----NYAPSALARSLKLNQTRTIGMLITASTNPFYSELVRGVERSCFERGYSLVL 91 (327)
T ss_pred HHhCCCCCCCHHHHHHHHHHHHHH-----CCCccHHHHHHhhCCCCeEEEEeCCCCCCcHHHHHHHHHHHHHHcCCEEEE
Confidence 6788875 8888888887777666 3333 45555432 2455556678889999999988776
Q ss_pred EeCCCCCCHHHHHHHHHHhcCCCCccEEEEe
Q psy7981 76 VKLPRSITEIELLSRLKKLNEDPSVHGIIVQ 106 (216)
Q Consensus 76 ~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq 106 (216)
..... +.++..+.++.+.. .+|+||++.
T Consensus 92 ~~~~~--~~~~~~~~~~~l~~-~~vdGiI~~ 119 (327)
T PRK10423 92 CNTEG--DEQRMNRNLETLMQ-KRVDGLLLL 119 (327)
T ss_pred EeCCC--CHHHHHHHHHHHHH-cCCCEEEEe
Confidence 54332 34444566666544 469999985
No 78
>PRK00779 ornithine carbamoyltransferase; Provisional
Probab=94.50 E-value=3.2 Score=37.55 Aligned_cols=133 Identities=12% Similarity=0.048 Sum_probs=88.0
Q ss_pred chHHHHHHHHHHHHHcCcceEEEeCCCC--CCHHHHHHHHHHhcCCCCccEEEEeCCCCCCCCCCHHHHhhhcCCCCCcc
Q psy7981 54 DSNVYIRMKMKAAKEIGIDAQHVKLPRS--ITEIELLSRLKKLNEDPSVHGIIVQMPLDSDNDINAMLVTDSVSPEKDVD 131 (216)
Q Consensus 54 as~~Yv~~k~k~a~~~Gi~~~~~~l~~~--~~~~el~~~I~~lN~D~~V~GIlvqlPL~~P~~id~~~i~~~I~p~KDVD 131 (216)
.|-----+=..+|.++|.++....-... ...|.+.+.++-|+.= +|+|.+-.|- +-..+.+.+..
T Consensus 53 ~STRTR~SFe~A~~~LGg~~i~l~~~~ss~~kgEsl~Dt~~~l~~~--~D~iv~R~~~----~~~~~~~a~~~------- 119 (304)
T PRK00779 53 PSTRTRVSFEVGMAQLGGHAIFLSPRDTQLGRGEPIEDTARVLSRY--VDAIMIRTFE----HETLEELAEYS------- 119 (304)
T ss_pred CCchHHHHHHHHHHHcCCcEEEECcccccCCCCcCHHHHHHHHHHh--CCEEEEcCCC----hhHHHHHHHhC-------
Confidence 3333334458899999998877642211 1124455555555444 7788887664 33333443322
Q ss_pred cCCccchhHhhcCCCCCcccCCHHH-HHHHHHHhCCCCCCCeEEEecCCCcccHHHHHHhhhCCCEEEEecCCCCC
Q psy7981 132 GLNTINEGRVAIGDMNGFIPCTPNG-VLELIKRTNVTIAGTNAVVLGRSKIVGTPAAELLKWKHATVTVCHSKTKN 206 (216)
Q Consensus 132 G~~~~n~G~l~~~~~~~~~PcTa~a-v~~lL~~~~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~ATVtichs~T~~ 206 (216)
++-.+|.|- ....||=+.+ ++.+.++.| .++|++|++||-...|-+.++.+|..-|++|++|+=.+-.
T Consensus 120 ~vPVINag~------~~~HPtQaL~Dl~Ti~e~~g-~l~gl~i~~vGd~~~v~~Sl~~~l~~~g~~v~~~~P~~~~ 188 (304)
T PRK00779 120 TVPVINGLT------DLSHPCQILADLLTIYEHRG-SLKGLKVAWVGDGNNVANSLLLAAALLGFDLRVATPKGYE 188 (304)
T ss_pred CCCEEeCCC------CCCChHHHHHHHHHHHHHhC-CcCCcEEEEEeCCCccHHHHHHHHHHcCCEEEEECCcccC
Confidence 245677652 2578997777 445556666 5999999999997788999999999999999999876643
No 79
>PRK14030 glutamate dehydrogenase; Provisional
Probab=94.50 E-value=0.18 Score=47.99 Aligned_cols=50 Identities=22% Similarity=0.133 Sum_probs=42.3
Q ss_pred cccCCHHHHHHHH----HHhCCCCCCCeEEEecCCCcccHHHHHHhhhCCCEEEE
Q psy7981 149 FIPCTPNGVLELI----KRTNVTIAGTNAVVLGRSKIVGTPAAELLKWKHATVTV 199 (216)
Q Consensus 149 ~~PcTa~av~~lL----~~~~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~ATVti 199 (216)
--+.|..|++..+ ++.|.+++|++|+|=|- ..||.-++.+|...||+|..
T Consensus 203 r~~ATg~Gv~~~~~~~~~~~g~~l~g~~vaIQGf-GnVG~~aA~~L~e~GakvVa 256 (445)
T PRK14030 203 RPEATGFGALYFVHQMLETKGIDIKGKTVAISGF-GNVAWGAATKATELGAKVVT 256 (445)
T ss_pred CCCccHHHHHHHHHHHHHHcCCCcCCCEEEEECC-CHHHHHHHHHHHHCCCEEEE
Confidence 4458999977555 55689999999999995 56799999999999999887
No 80
>PRK09526 lacI lac repressor; Reviewed
Probab=94.41 E-value=0.52 Score=41.51 Aligned_cols=97 Identities=16% Similarity=0.204 Sum_probs=58.9
Q ss_pred hhcccHH-HHHHHHHHHHHHHHHHHh--------cCCCCCceEEEEEeCC-CcchHHHHHHHHHHHHHcCcceEEEeCCC
Q psy7981 11 QILSGTA-VSGDIREGLKERVKKLKE--------RLPDFEPGLAIVQVGG-REDSNVYIRMKMKAAKEIGIDAQHVKLPR 80 (216)
Q Consensus 11 ~il~Gk~-vA~~i~~~ik~~v~~l~~--------~~~~~~P~LaiI~vg~-~~as~~Yv~~k~k~a~~~Gi~~~~~~l~~ 80 (216)
++|+|+. |+++.++.+.+.+++|-= -..+....+++|.-.- ++--..+.+...+.|++.|..+......+
T Consensus 24 rvLn~~~~vs~~tr~rV~~~a~elgY~pn~~a~~l~~~~~~~Igvv~~~~~~~~~~~~~~gi~~~a~~~g~~~~i~~~~~ 103 (342)
T PRK09526 24 RVLNQASHVSAKTREKVEAAMAELNYVPNRVAQQLAGKQSLTIGLATTSLALHAPSQIAAAIKSRADQLGYSVVISMVER 103 (342)
T ss_pred HHhcCCCCCCHHHHHHHHHHHHHHCCCcCHHHHHhhcCCCceEEEEeCCCCcccHHHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 6788865 777777777776666510 0001222455554221 23334556788899999999988765543
Q ss_pred CCCHHHHHHHHHHhcCCCCccEEEEeCCC
Q psy7981 81 SITEIELLSRLKKLNEDPSVHGIIVQMPL 109 (216)
Q Consensus 81 ~~~~~el~~~I~~lN~D~~V~GIlvqlPL 109 (216)
+ +.++..+.++.|. +..||||++..|+
T Consensus 104 ~-~~~~~~~~l~~l~-~~~vdGiii~~~~ 130 (342)
T PRK09526 104 S-GVEACQAAVNELL-AQRVSGVIINVPL 130 (342)
T ss_pred C-hHHHHHHHHHHHH-hcCCCEEEEecCC
Confidence 3 2233445566664 3579999997676
No 81
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=94.32 E-value=0.026 Score=44.58 Aligned_cols=42 Identities=19% Similarity=0.252 Sum_probs=35.3
Q ss_pred HHHhCCCCCCCeEEEecCCCcccHHHHHHhhhCCCE-EEEecCC
Q psy7981 161 IKRTNVTIAGTNAVVLGRSKIVGTPAAELLKWKHAT-VTVCHSK 203 (216)
Q Consensus 161 L~~~~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~AT-Vtichs~ 203 (216)
.+...-+++|++|+|||.+.. |+.++..|..+|++ |+++.+.
T Consensus 3 a~~~~~~l~~~~vlviGaGg~-ar~v~~~L~~~g~~~i~i~nRt 45 (135)
T PF01488_consen 3 AKKKFGDLKGKRVLVIGAGGA-ARAVAAALAALGAKEITIVNRT 45 (135)
T ss_dssp HCTHHSTGTTSEEEEESSSHH-HHHHHHHHHHTTSSEEEEEESS
T ss_pred hHHhcCCcCCCEEEEECCHHH-HHHHHHHHHHcCCCEEEEEECC
Confidence 333334889999999999885 99999999999999 9999863
No 82
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=94.28 E-value=0.098 Score=41.19 Aligned_cols=53 Identities=13% Similarity=0.255 Sum_probs=43.5
Q ss_pred HHHHHHHHHhCCCCCCCeEEEecCCCcccHHHHHHhhhCC-CEEEEecCCCCChH
Q psy7981 155 NGVLELIKRTNVTIAGTNAVVLGRSKIVGTPAAELLKWKH-ATVTVCHSKTKNIQ 208 (216)
Q Consensus 155 ~av~~lL~~~~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~-ATVtichs~T~~l~ 208 (216)
-|+.+-+++.++++++++++|+|-+ .+|+.++..|.+.+ ..|+++.+.....+
T Consensus 4 ~g~~~a~~~~~~~~~~~~i~iiG~G-~~g~~~a~~l~~~g~~~v~v~~r~~~~~~ 57 (155)
T cd01065 4 LGFVRALEEAGIELKGKKVLILGAG-GAARAVAYALAELGAAKIVIVNRTLEKAK 57 (155)
T ss_pred HHHHHHHHhhCCCCCCCEEEEECCc-HHHHHHHHHHHHCCCCEEEEEcCCHHHHH
Confidence 4778888888999999999999985 67999999999885 78999976443333
No 83
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=94.23 E-value=0.057 Score=44.10 Aligned_cols=36 Identities=31% Similarity=0.250 Sum_probs=32.0
Q ss_pred CCCCCCCeEEEecCCCcccHHHHHHhhhCCCEEEEec
Q psy7981 165 NVTIAGTNAVVLGRSKIVGTPAAELLKWKHATVTVCH 201 (216)
Q Consensus 165 ~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~ATVtich 201 (216)
.++++|++|+|||-+.+ |.=.+.+|+..||.||++.
T Consensus 8 ~l~l~~~~vlVvGGG~v-a~rka~~Ll~~ga~V~VIs 43 (157)
T PRK06719 8 MFNLHNKVVVIIGGGKI-AYRKASGLKDTGAFVTVVS 43 (157)
T ss_pred EEEcCCCEEEEECCCHH-HHHHHHHHHhCCCEEEEEc
Confidence 46899999999998775 8889999999999999993
No 84
>PLN02527 aspartate carbamoyltransferase
Probab=94.21 E-value=4.2 Score=36.83 Aligned_cols=131 Identities=15% Similarity=0.086 Sum_probs=85.0
Q ss_pred hHHHHHHHHHHHHHcCcceEEEeCCC-CC---CHHHHHHHHHHhcCCCCccEEEEeCCCCCCCCCCHHHHhhhcCCCCCc
Q psy7981 55 SNVYIRMKMKAAKEIGIDAQHVKLPR-SI---TEIELLSRLKKLNEDPSVHGIIVQMPLDSDNDINAMLVTDSVSPEKDV 130 (216)
Q Consensus 55 s~~Yv~~k~k~a~~~Gi~~~~~~l~~-~~---~~~el~~~I~~lN~D~~V~GIlvqlPL~~P~~id~~~i~~~I~p~KDV 130 (216)
|-.---+=..++.++|.++....-.. ++ ..|.+.+.++-|+.= +|+|++=.|- +-..+.+.+.. .
T Consensus 50 StRTR~SFe~A~~~LGg~~i~l~~~~~~s~~~kgEs~~Dta~vls~y--~D~iviR~~~----~~~~~~~a~~~----~- 118 (306)
T PLN02527 50 STRTRLSFESAMKRLGGEVLTTENAGEFSSAAKGETLEDTIRTVEGY--SDIIVLRHFE----SGAARRAAATA----E- 118 (306)
T ss_pred CchhHHHHHHHHHHcCCCEEEeCCCCCccccCCCcCHHHHHHHHHHh--CcEEEEECCC----hhHHHHHHHhC----C-
Confidence 43333455789999999888776431 21 135555555555444 8899988664 33334443332 1
Q ss_pred ccCCccchhHhhcCCCCCcccCCHHH-HHHHHHHhCCCCCCCeEEEecCC-C-cccHHHHHHhhhC-CCEEEEecCCC
Q psy7981 131 DGLNTINEGRVAIGDMNGFIPCTPNG-VLELIKRTNVTIAGTNAVVLGRS-K-IVGTPAAELLKWK-HATVTVCHSKT 204 (216)
Q Consensus 131 DG~~~~n~G~l~~~~~~~~~PcTa~a-v~~lL~~~~i~l~Gk~vvViGrS-~-~VG~Pla~lL~~~-~ATVtichs~T 204 (216)
+-.+|.|- | ....||=+++ ++.+.++.| +++|++|++||-. + .|-+.++.+|... |+.|++|+=..
T Consensus 119 --vPVINa~~---g--~~~HPtQ~LaDl~Ti~e~~g-~l~g~kva~vGD~~~~rv~~Sl~~~~~~~~g~~v~~~~P~~ 188 (306)
T PLN02527 119 --IPVINAGD---G--PGQHPTQALLDVYTIQREIG-RLDGIKVGLVGDLANGRTVRSLAYLLAKYEDVKIYFVAPDV 188 (306)
T ss_pred --CCEEECCC---C--CCCChHHHHHHHHHHHHHhC-CcCCCEEEEECCCCCChhHHHHHHHHHhcCCCEEEEECCCc
Confidence 33466532 1 2578998888 455556666 5999999999975 3 4777888777765 99999998655
No 85
>PRK02102 ornithine carbamoyltransferase; Validated
Probab=94.20 E-value=4.1 Score=37.43 Aligned_cols=132 Identities=12% Similarity=0.029 Sum_probs=87.3
Q ss_pred chHHHHHHHHHHHHHcCcceEEEeCCCC---CCHHHHHHHHHHhcCCCCccEEEEeCCCCCCCCCCHHHHhhhcCCCCCc
Q psy7981 54 DSNVYIRMKMKAAKEIGIDAQHVKLPRS---ITEIELLSRLKKLNEDPSVHGIIVQMPLDSDNDINAMLVTDSVSPEKDV 130 (216)
Q Consensus 54 as~~Yv~~k~k~a~~~Gi~~~~~~l~~~---~~~~el~~~I~~lN~D~~V~GIlvqlPL~~P~~id~~~i~~~I~p~KDV 130 (216)
.|-.---+=.-+|.++|..+.... +++ ..-|.+.+.++-|+.= +|+|++-.|- +-..+.+.+.. +|
T Consensus 56 pSTRTR~SFe~A~~~LGg~~i~l~-~~~ss~~kgEsl~Dt~rvls~y--~D~iviR~~~----~~~~~~~a~~~----~v 124 (331)
T PRK02102 56 TSTRTRCAFEVAAIDLGAHVTYLG-PNDSQLGKKESIEDTARVLGRM--YDGIEYRGFK----QEIVEELAKYS----GV 124 (331)
T ss_pred CChhHHHHHHHHHHHcCCCEEEcC-cccccCCCCcCHHHHHHHHhhc--CCEEEEECCc----hHHHHHHHHhC----CC
Confidence 333333344788999999987442 121 1235666666666544 8899998764 33333443332 33
Q ss_pred ccCCccchhHhhcCCCCCcccCCHHH-HHHHHHHhCCCCCCCeEEEecCC-CcccHHHHHHhhhCCCEEEEecCCCCC
Q psy7981 131 DGLNTINEGRVAIGDMNGFIPCTPNG-VLELIKRTNVTIAGTNAVVLGRS-KIVGTPAAELLKWKHATVTVCHSKTKN 206 (216)
Q Consensus 131 DG~~~~n~G~l~~~~~~~~~PcTa~a-v~~lL~~~~i~l~Gk~vvViGrS-~~VG~Pla~lL~~~~ATVtichs~T~~ 206 (216)
-.+|.|- ....||=+++ ++.+.++.| .++|++|++||-. +.|-+.+..++..-|++|++|+=.+-.
T Consensus 125 ---PVINa~~------~~~HPtQaLaDl~Ti~e~~g-~l~g~~va~vGd~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~ 192 (331)
T PRK02102 125 ---PVWNGLT------DEWHPTQMLADFMTMKEHFG-PLKGLKLAYVGDGRNNMANSLMVGGAKLGMDVRICAPKELW 192 (331)
T ss_pred ---CEEECCC------CCCChHHHHHHHHHHHHHhC-CCCCCEEEEECCCcccHHHHHHHHHHHcCCEEEEECCcccc
Confidence 3466532 2578998888 455556665 6899999999985 458999999999999999999866533
No 86
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=94.17 E-value=0.13 Score=48.25 Aligned_cols=53 Identities=19% Similarity=0.279 Sum_probs=44.2
Q ss_pred CCHHHHHHHHHHh--CCCCCCCeEEEecC----------------CCcccHHHHHHhhhCCCEEEEecCCC
Q psy7981 152 CTPNGVLELIKRT--NVTIAGTNAVVLGR----------------SKIVGTPAAELLKWKHATVTVCHSKT 204 (216)
Q Consensus 152 cTa~av~~lL~~~--~i~l~Gk~vvViGr----------------S~~VG~Pla~lL~~~~ATVtichs~T 204 (216)
..|.-++..++++ .-+++||+|+|-|. |...|+.+|..|..+||+|+++|..+
T Consensus 168 ~~~~~I~~~~~~~~~~~~l~gk~vlITgG~T~E~ID~VR~isN~SSG~~G~aiA~~l~~~Ga~V~~v~~~~ 238 (399)
T PRK05579 168 AEPEEIVAAAERALSPKDLAGKRVLITAGPTREPIDPVRYITNRSSGKMGYALARAAARRGADVTLVSGPV 238 (399)
T ss_pred CCHHHHHHHHHHHhhhcccCCCEEEEeCCCccccccceeeeccCCcchHHHHHHHHHHHCCCEEEEeCCCc
Confidence 3667777766654 24689999999999 78899999999999999999998764
No 87
>TIGR01481 ccpA catabolite control protein A. Catabolite control protein A is a LacI family global transcriptional regulator found in Gram-positive bacteria. CcpA is involved in repressing carbohydrate utilization genes [ex: alpha-amylase (amyE), acetyl-coenzyme A synthase (acsA)] and in activating genes involved in transporting excess carbon from the cell [ex: acetate kinase (ackA), alpha-acetolactate synthase (alsS)]. Additionally, disruption of CcpA in Bacillus megaterium, Staphylococcus xylosus, Lactobacillus casei and Lactocacillus pentosus also decreases growth rate, which suggests CcpA is involved in the regulation of other metabolic pathways.
Probab=94.15 E-value=3.6 Score=35.90 Aligned_cols=93 Identities=16% Similarity=0.132 Sum_probs=55.8
Q ss_pred hhcccHH-HHHHHHHHHHHHHHHHHhc--------CCCCCceEEEEEeC-CCcchHHHHHHHHHHHHHcCcceEEEeCCC
Q psy7981 11 QILSGTA-VSGDIREGLKERVKKLKER--------LPDFEPGLAIVQVG-GREDSNVYIRMKMKAAKEIGIDAQHVKLPR 80 (216)
Q Consensus 11 ~il~Gk~-vA~~i~~~ik~~v~~l~~~--------~~~~~P~LaiI~vg-~~~as~~Yv~~k~k~a~~~Gi~~~~~~l~~ 80 (216)
++|+|+. |+++-++.+.+.+++|-=. ..+..-.++++.-. .++--...++...+.|++.|..+.......
T Consensus 20 rvLn~~~~vs~~tr~rV~~~a~~lgY~pn~~a~~l~~~~~~~Igvv~~~~~~~f~~~l~~~i~~~~~~~g~~~~i~~~~~ 99 (329)
T TIGR01481 20 RVVNGNPNVKPATRKKVLEVIKRLDYRPNAVARGLASKRTTTVGVIIPDISNIYYAELARGIEDIATMYKYNIILSNSDE 99 (329)
T ss_pred HHhCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHhhCCCCEEEEEeCCCCchhHHHHHHHHHHHHHHcCCEEEEEeCCC
Confidence 6788875 7777777777777666100 00122245555422 123333345677788999999887765443
Q ss_pred CCCHHHHHHHHHHhcCCCCccEEEEe
Q psy7981 81 SITEIELLSRLKKLNEDPSVHGIIVQ 106 (216)
Q Consensus 81 ~~~~~el~~~I~~lN~D~~V~GIlvq 106 (216)
..++..+.++.+.. ..|+||++.
T Consensus 100 --~~~~~~~~~~~l~~-~~vdGiIi~ 122 (329)
T TIGR01481 100 --DPEKEVQVLNTLLS-KQVDGIIFM 122 (329)
T ss_pred --CHHHHHHHHHHHHh-CCCCEEEEe
Confidence 34445566666654 579999985
No 88
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=94.06 E-value=0.11 Score=44.66 Aligned_cols=51 Identities=24% Similarity=0.259 Sum_probs=40.7
Q ss_pred CHHHHHH----HHHHhCCCCCCCeEEEecCCCcccHHHHHHhhhCCC-EEEEecCCC
Q psy7981 153 TPNGVLE----LIKRTNVTIAGTNAVVLGRSKIVGTPAAELLKWKHA-TVTVCHSKT 204 (216)
Q Consensus 153 Ta~av~~----lL~~~~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~A-TVtichs~T 204 (216)
|..|+.. .+++.+.+++|++|+|.|-++ ||+-++.+|.++|+ .|.++.+..
T Consensus 2 Tg~Gv~~~~~~~~~~~~~~l~g~~vaIqGfGn-VG~~~a~~L~~~G~~vV~vsD~~g 57 (217)
T cd05211 2 TGYGVVVAMKAAMKHLGDSLEGLTVAVQGLGN-VGWGLAKKLAEEGGKVLAVSDPDG 57 (217)
T ss_pred chhHHHHHHHHHHHHcCCCcCCCEEEEECCCH-HHHHHHHHHHHcCCEEEEEEcCCC
Confidence 5555554 455668899999999999755 69999999999977 688888754
No 89
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=94.00 E-value=0.038 Score=41.67 Aligned_cols=37 Identities=27% Similarity=0.373 Sum_probs=29.6
Q ss_pred CCCCCCeEEEecCCCcccHHHHHHhhhCCCEEEEecCC
Q psy7981 166 VTIAGTNAVVLGRSKIVGTPAAELLKWKHATVTVCHSK 203 (216)
Q Consensus 166 i~l~Gk~vvViGrS~~VG~Pla~lL~~~~ATVtichs~ 203 (216)
++++|++|+|||-+.+ |.--+..|++.||.||+....
T Consensus 3 l~l~~~~vlVvGgG~v-a~~k~~~Ll~~gA~v~vis~~ 39 (103)
T PF13241_consen 3 LDLKGKRVLVVGGGPV-AARKARLLLEAGAKVTVISPE 39 (103)
T ss_dssp E--TT-EEEEEEESHH-HHHHHHHHCCCTBEEEEEESS
T ss_pred EEcCCCEEEEECCCHH-HHHHHHHHHhCCCEEEEECCc
Confidence 4789999999998765 888899999999999998654
No 90
>TIGR03316 ygeW probable carbamoyltransferase YgeW. Members of this protein family include the ygeW gene product of Escherichia coli. The function is unknown. Members show homology to ornithine carbamoyltransferase (TIGR00658) and aspartate carbamoyltransferase (carbamoyltransferase), and therefore may belong to the carbamoyltransferases in function. Members often are found in a large, conserved genomic region associated with purine catabolism.
Probab=93.98 E-value=1.2 Score=41.34 Aligned_cols=135 Identities=15% Similarity=0.073 Sum_probs=83.9
Q ss_pred HHHHHHHHcCcceEEEeCCCCCC---HHHHHHHHHHhcCCCCccEEEEeCCCC-CCCCCCHHHHhhhc-CCCCC-c--cc
Q psy7981 61 MKMKAAKEIGIDAQHVKLPRSIT---EIELLSRLKKLNEDPSVHGIIVQMPLD-SDNDINAMLVTDSV-SPEKD-V--DG 132 (216)
Q Consensus 61 ~k~k~a~~~Gi~~~~~~l~~~~~---~~el~~~I~~lN~D~~V~GIlvqlPL~-~P~~id~~~i~~~I-~p~KD-V--DG 132 (216)
+=.-++.++|.++....- .+++ -|-+.+.++-|+.= +|+|.+=.|-. +..|-..+.+.+.. .--|| | -.
T Consensus 59 SFE~A~~~LGg~~i~l~~-~~s~~~kgEsl~Dtarvls~y--~D~Iv~R~~~~~~~~~~~l~~~a~~~~~~~~~~~~~s~ 135 (357)
T TIGR03316 59 SFASAMNLLGLHAQDLDE-GKSQIGHGETVRETAEMISFF--ADGIGIRDDMYIGVGNAYMREVAKYVQEGYKDGVLEQR 135 (357)
T ss_pred HHHHHHHHcCCcEEEeCC-ccccCCCCCCHHHHHHHHHHh--CcEEEEeCCCccccccHHHHHHHHhhhhccccccccCC
Confidence 447789999999887763 2211 24455555555443 88999987740 00122112332221 12232 0 11
Q ss_pred CCccchhHhhcCCCCCcccCCHHH-HHHHHHHhCC--CCCCCeEEEec-------CCCcccHHHHHHhhhCCCEEEEecC
Q psy7981 133 LNTINEGRVAIGDMNGFIPCTPNG-VLELIKRTNV--TIAGTNAVVLG-------RSKIVGTPAAELLKWKHATVTVCHS 202 (216)
Q Consensus 133 ~~~~n~G~l~~~~~~~~~PcTa~a-v~~lL~~~~i--~l~Gk~vvViG-------rS~~VG~Pla~lL~~~~ATVtichs 202 (216)
+-.+|.| + ..+.||=+++ ++.+.+++|- +++|++|+++| |.+.|.+.+..++..-|+.|++|+=
T Consensus 136 vPVINa~----~--~~~HPtQaLaDl~Ti~e~~G~~~~l~g~kvai~~~~d~~~gr~~~v~~Sl~~~~~~~G~~v~~~~P 209 (357)
T TIGR03316 136 PPLVNLQ----C--DIDHPTQAMADIMTLQEKFGGIENLKGKKFAMTWAYSPSYGKPLSVPQGIIGLMTRFGMDVTLAHP 209 (357)
T ss_pred CCEEECC----C--CCCCchHHHHHHHHHHHHhCCccccCCCEEEEEeccccccCccchHHHHHHHHHHHcCCEEEEECC
Confidence 3345653 1 2589998888 5566677773 48999999885 5667778888888888999999987
Q ss_pred CC
Q psy7981 203 KT 204 (216)
Q Consensus 203 ~T 204 (216)
..
T Consensus 210 ~~ 211 (357)
T TIGR03316 210 EG 211 (357)
T ss_pred Cc
Confidence 65
No 91
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=93.79 E-value=0.11 Score=44.06 Aligned_cols=37 Identities=22% Similarity=0.239 Sum_probs=34.0
Q ss_pred CCCCCeEEEecCCCcccHHHHHHhhhCCCEEEEecCC
Q psy7981 167 TIAGTNAVVLGRSKIVGTPAAELLKWKHATVTVCHSK 203 (216)
Q Consensus 167 ~l~Gk~vvViGrS~~VG~Pla~lL~~~~ATVtichs~ 203 (216)
++.||+|+|.|-|.-+|+-++..|.++|++|.++.+.
T Consensus 12 ~l~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~ 48 (258)
T PRK06935 12 SLDGKVAIVTGGNTGLGQGYAVALAKAGADIIITTHG 48 (258)
T ss_pred cCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence 4789999999999999999999999999999888654
No 92
>PRK11891 aspartate carbamoyltransferase; Provisional
Probab=93.74 E-value=1 Score=42.76 Aligned_cols=125 Identities=14% Similarity=0.099 Sum_probs=83.0
Q ss_pred HHHHHHHHHcCcceEEEeCCC------CCCHHHHHHHHHHhcCCCCccEEEEeCCCCCCCCCCHHHHhhhcCCCCCcccC
Q psy7981 60 RMKMKAAKEIGIDAQHVKLPR------SITEIELLSRLKKLNEDPSVHGIIVQMPLDSDNDINAMLVTDSVSPEKDVDGL 133 (216)
Q Consensus 60 ~~k~k~a~~~Gi~~~~~~l~~------~~~~~el~~~I~~lN~D~~V~GIlvqlPL~~P~~id~~~i~~~I~p~KDVDG~ 133 (216)
-+=..++.++|..+....-+. ..|-+|....+..+ +|+|++=.|- |-..+++.+.. + +
T Consensus 142 ~SFE~A~~~LGg~~i~l~~~~~ss~~kGESi~DTarvLs~y-----~D~IviR~~~----~~~~~e~A~~s----~---v 205 (429)
T PRK11891 142 VSFGAAFCRLGGSVCDTTGFTFSSMAKGESIYDTSRVMSGY-----VDALVIRHPE----QGSVAEFARAT----N---L 205 (429)
T ss_pred HHHHHHHHHcCCeEEEeCCccccCCCCCCCHHHHHHHHHHh-----CCEEEEeCCc----hhHHHHHHHhC----C---C
Confidence 345778899999887663222 22344444555555 7888887664 33444444332 1 4
Q ss_pred CccchhHhhcCCCCCcccCCHHH-HHHHHHHhCC---CCCCCeEEEecCC--CcccHHHHHHhhhC-CCEEEEecCCCC
Q psy7981 134 NTINEGRVAIGDMNGFIPCTPNG-VLELIKRTNV---TIAGTNAVVLGRS--KIVGTPAAELLKWK-HATVTVCHSKTK 205 (216)
Q Consensus 134 ~~~n~G~l~~~~~~~~~PcTa~a-v~~lL~~~~i---~l~Gk~vvViGrS--~~VG~Pla~lL~~~-~ATVtichs~T~ 205 (216)
-.+|.|- | ....||=+++ ++.+.+++|- +++|++|++||-. +.|...+..+|... |+.|++|+=.+-
T Consensus 206 PVINAgd---g--~~~HPtQaLaDl~Ti~E~~g~~g~~l~G~kIa~vGD~~~~rv~~Sl~~~la~~~G~~v~l~~P~~~ 279 (429)
T PRK11891 206 PVINGGD---G--PGEHPSQALLDLYTIQREFSRLGKIVDGAHIALVGDLKYGRTVHSLVKLLALYRGLKFTLVSPPTL 279 (429)
T ss_pred CEEECCC---C--CCCCcHHHHHHHHHHHHHhCccCCCcCCCEEEEECcCCCChHHHHHHHHHHHhcCCEEEEECCCcc
Confidence 4566532 2 3678998888 6666677653 4899999999976 56778888887765 999999986654
No 93
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=93.67 E-value=0.12 Score=48.62 Aligned_cols=51 Identities=29% Similarity=0.225 Sum_probs=42.8
Q ss_pred CCHHHHHHHHH-HhCCCCCCCeEEEecCCCcccHHHHHHhhhCCCEEEEecCC
Q psy7981 152 CTPNGVLELIK-RTNVTIAGTNAVVLGRSKIVGTPAAELLKWKHATVTVCHSK 203 (216)
Q Consensus 152 cTa~av~~lL~-~~~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~ATVtichs~ 203 (216)
+|.+++++-+. .+++.+.|++|+|+|.+.+ |+.++..+...|+.|+++...
T Consensus 176 g~g~s~~~~i~r~t~~~l~Gk~VvViG~G~I-G~~vA~~ak~~Ga~ViV~d~d 227 (406)
T TIGR00936 176 GTGQSTIDGILRATNLLIAGKTVVVAGYGWC-GKGIAMRARGMGARVIVTEVD 227 (406)
T ss_pred ccchhHHHHHHHhcCCCCCcCEEEEECCCHH-HHHHHHHHhhCcCEEEEEeCC
Confidence 56677666444 4588899999999999995 999999999999999998643
No 94
>PLN02477 glutamate dehydrogenase
Probab=93.63 E-value=0.16 Score=47.98 Aligned_cols=54 Identities=28% Similarity=0.258 Sum_probs=45.5
Q ss_pred cccCCHHHHHHHH----HHhCCCCCCCeEEEecCCCcccHHHHHHhhhCCCEEE-EecCC
Q psy7981 149 FIPCTPNGVLELI----KRTNVTIAGTNAVVLGRSKIVGTPAAELLKWKHATVT-VCHSK 203 (216)
Q Consensus 149 ~~PcTa~av~~lL----~~~~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~ATVt-ichs~ 203 (216)
.-+.|+.|+...+ ++++.+++|++|+|.|- ..||+-++.+|.++||.|+ ++.+.
T Consensus 181 r~~aTg~Gv~~~~~~~~~~~g~~l~g~~VaIqGf-GnVG~~~A~~L~e~GakVVaVsD~~ 239 (410)
T PLN02477 181 REAATGRGVVFATEALLAEHGKSIAGQTFVIQGF-GNVGSWAAQLIHEKGGKIVAVSDIT 239 (410)
T ss_pred CCccchHHHHHHHHHHHHHcCCCccCCEEEEECC-CHHHHHHHHHHHHcCCEEEEEECCC
Confidence 3468999876655 55789999999999996 5569999999999999998 88875
No 95
>PRK04284 ornithine carbamoyltransferase; Provisional
Probab=93.62 E-value=2.9 Score=38.32 Aligned_cols=123 Identities=10% Similarity=-0.039 Sum_probs=83.4
Q ss_pred HHHHHHHHHcCcceEEEeCCCCCC----HHHHHHHHHHhcCCCCccEEEEeCCCCCCCCCCHHHHhhhcCCCCCcccCCc
Q psy7981 60 RMKMKAAKEIGIDAQHVKLPRSIT----EIELLSRLKKLNEDPSVHGIIVQMPLDSDNDINAMLVTDSVSPEKDVDGLNT 135 (216)
Q Consensus 60 ~~k~k~a~~~Gi~~~~~~l~~~~~----~~el~~~I~~lN~D~~V~GIlvqlPL~~P~~id~~~i~~~I~p~KDVDG~~~ 135 (216)
-+=..++.++|.++... +...+ -|.+.+.++-|+.= +|+|++-.|- +-..+.+.+.. + +-.
T Consensus 61 ~SFe~A~~~LGg~~i~l--~~~~ss~~kgEsl~DTarvls~y--~D~iviR~~~----~~~~~~~a~~s----~---vPV 125 (332)
T PRK04284 61 CAFEVAAYDQGAHVTYL--GPTGSQMGKKESTKDTARVLGGM--YDGIEYRGFS----QRTVETLAEYS----G---VPV 125 (332)
T ss_pred HHHHHHHHHcCCeEEEc--CCccccCCCCcCHHHHHHHHHHh--CCEEEEecCc----hHHHHHHHHhC----C---CCE
Confidence 34577899999998754 33322 35666666666555 8899997653 33334443332 2 334
Q ss_pred cchhHhhcCCCCCcccCCHHH-HHHHHHH-hCCCCCCCeEEEecCC-CcccHHHHHHhhhCCCEEEEecCCC
Q psy7981 136 INEGRVAIGDMNGFIPCTPNG-VLELIKR-TNVTIAGTNAVVLGRS-KIVGTPAAELLKWKHATVTVCHSKT 204 (216)
Q Consensus 136 ~n~G~l~~~~~~~~~PcTa~a-v~~lL~~-~~i~l~Gk~vvViGrS-~~VG~Pla~lL~~~~ATVtichs~T 204 (216)
+|.| + ....||=+++ ++.+.++ .| +++|++|++||-. +.|.+.+..+|..-|++|++|+=.+
T Consensus 126 INa~----~--~~~HPtQaL~Dl~Ti~e~~~g-~l~g~kia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~ 190 (332)
T PRK04284 126 WNGL----T--DEDHPTQVLADFLTAKEHLKK-PYKDIKFTYVGDGRNNVANALMQGAAIMGMDFHLVCPKE 190 (332)
T ss_pred EECC----C--CCCChHHHHHHHHHHHHHhcC-CcCCcEEEEecCCCcchHHHHHHHHHHcCCEEEEECCcc
Confidence 6642 2 2678998887 4455555 35 6999999999974 4688999999998999999998654
No 96
>TIGR02417 fruct_sucro_rep D-fructose-responsive transcription factor. Members of this family belong the lacI helix-turn-helix family (pfam00356) of DNA-binding transcriptional regulators. All members are from the proteobacteria. Characterized members act as positive and negative transcriptional regulators of fructose and sucrose transport and metabolism. Sucrose is a disaccharide composed of fructose and glucose; D-fructose-1-phosphate rather than an intact sucrose moiety has been shown to act as the inducer.
Probab=93.60 E-value=0.8 Score=40.09 Aligned_cols=93 Identities=13% Similarity=0.085 Sum_probs=59.4
Q ss_pred hhcccHH----HHHHHHHHHHHHHHHHHhc--------CCCCCceEEEEEeC-CCcchHHHHHHHHHHHHHcCcceEEEe
Q psy7981 11 QILSGTA----VSGDIREGLKERVKKLKER--------LPDFEPGLAIVQVG-GREDSNVYIRMKMKAAKEIGIDAQHVK 77 (216)
Q Consensus 11 ~il~Gk~----vA~~i~~~ik~~v~~l~~~--------~~~~~P~LaiI~vg-~~~as~~Yv~~k~k~a~~~Gi~~~~~~ 77 (216)
++|+|+. |+++.++.+.+.++++-=. ..+....++++.-. +++-.....+...+.|++.|..+....
T Consensus 18 rvLn~~~~~~~vs~~tr~rV~~~a~~lgY~pn~~a~~l~~~~~~~Igvi~~~~~~~~~~~~~~~i~~~~~~~gy~~~i~~ 97 (327)
T TIGR02417 18 YVINGKAKEYRISQETVERVMAVVREQGYQPNIHAASLRAGRSRTIGLVIPDLENYSYARIAKELEQQCREAGYQLLIAC 97 (327)
T ss_pred HHHcCCCCCCccCHHHHHHHHHHHHHhCCCCCHHHHHhhcCCCceEEEEeCCCCCccHHHHHHHHHHHHHHCCCEEEEEe
Confidence 6799985 9998888888888776100 00222345555422 244445557788899999999988765
Q ss_pred CCCCCCHHHHHHHHHHhcCCCCccEEEEe
Q psy7981 78 LPRSITEIELLSRLKKLNEDPSVHGIIVQ 106 (216)
Q Consensus 78 l~~~~~~~el~~~I~~lN~D~~V~GIlvq 106 (216)
... +.++..+.++.+.. ..|+||++.
T Consensus 98 ~~~--~~~~~~~~~~~l~~-~~vdgiIi~ 123 (327)
T TIGR02417 98 SDD--NPDQEKVVIENLLA-RQVDALIVA 123 (327)
T ss_pred CCC--CHHHHHHHHHHHHH-cCCCEEEEe
Confidence 543 33444455666543 469999985
No 97
>PRK11303 DNA-binding transcriptional regulator FruR; Provisional
Probab=93.39 E-value=0.6 Score=40.85 Aligned_cols=93 Identities=13% Similarity=0.110 Sum_probs=57.4
Q ss_pred hhcccHH----HHHHHHHHHHHHHHHHHhc--------CCCCCceEEEEEeC-CCcchHHHHHHHHHHHHHcCcceEEEe
Q psy7981 11 QILSGTA----VSGDIREGLKERVKKLKER--------LPDFEPGLAIVQVG-GREDSNVYIRMKMKAAKEIGIDAQHVK 77 (216)
Q Consensus 11 ~il~Gk~----vA~~i~~~ik~~v~~l~~~--------~~~~~P~LaiI~vg-~~~as~~Yv~~k~k~a~~~Gi~~~~~~ 77 (216)
++|+|++ |+++-++++.+.+++|-=. ..+....++++.-+ +++--....+...+.|++.|+.+....
T Consensus 19 rvLn~~~~~~~Vs~~tr~rV~~~a~elgY~pn~~a~~l~~~~~~~Igvv~~~~~~~~~~~l~~gi~~~~~~~g~~~~~~~ 98 (328)
T PRK11303 19 YVINGKAKQYRVSDKTVEKVMAVVREHNYHPNAVAAGLRAGRTRSIGLIIPDLENTSYARIAKYLERQARQRGYQLLIAC 98 (328)
T ss_pred HHHcCCCCCCCcCHHHHHHHHHHHHHhCCCCCHHHHHhhcCCCceEEEEeCCCCCchHHHHHHHHHHHHHHcCCEEEEEe
Confidence 6799985 9998888888888776200 01223345555432 233333445678889999999987765
Q ss_pred CCCCCCHHHHHHHHHHhcCCCCccEEEEe
Q psy7981 78 LPRSITEIELLSRLKKLNEDPSVHGIIVQ 106 (216)
Q Consensus 78 l~~~~~~~el~~~I~~lN~D~~V~GIlvq 106 (216)
...+ .+...+.++.+-. ..|+|||+.
T Consensus 99 ~~~~--~~~~~~~~~~l~~-~~vdgiIi~ 124 (328)
T PRK11303 99 SDDQ--PDNEMRCAEHLLQ-RQVDALIVS 124 (328)
T ss_pred CCCC--HHHHHHHHHHHHH-cCCCEEEEc
Confidence 4332 3333455555533 369999995
No 98
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.28 E-value=0.12 Score=48.62 Aligned_cols=43 Identities=28% Similarity=0.213 Sum_probs=38.1
Q ss_pred HHHhCCCCCCCeEEEecCCCcccHHHHHHhhhCCCEEEEecCCC
Q psy7981 161 IKRTNVTIAGTNAVVLGRSKIVGTPAAELLKWKHATVTVCHSKT 204 (216)
Q Consensus 161 L~~~~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~ATVtichs~T 204 (216)
|.+++.+++|++|+|||-+. .|..+|..|.++|++||+++...
T Consensus 7 ~~~~~~~~~~~~v~viG~G~-~G~~~A~~L~~~G~~V~~~d~~~ 49 (480)
T PRK01438 7 LTSWHSDWQGLRVVVAGLGV-SGFAAADALLELGARVTVVDDGD 49 (480)
T ss_pred hhhcccCcCCCEEEEECCCH-HHHHHHHHHHHCCCEEEEEeCCc
Confidence 56778889999999999876 79999999999999999998654
No 99
>PRK13814 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional
Probab=93.25 E-value=6.3 Score=35.80 Aligned_cols=124 Identities=15% Similarity=0.139 Sum_probs=80.7
Q ss_pred HHHHHHHHcCcceEEEe-----CCCCCCHHHHHHHHHHhcCCCCccEEEEeCCCCCCCCCCHHHHhhhcCCCCCcccCCc
Q psy7981 61 MKMKAAKEIGIDAQHVK-----LPRSITEIELLSRLKKLNEDPSVHGIIVQMPLDSDNDINAMLVTDSVSPEKDVDGLNT 135 (216)
Q Consensus 61 ~k~k~a~~~Gi~~~~~~-----l~~~~~~~el~~~I~~lN~D~~V~GIlvqlPL~~P~~id~~~i~~~I~p~KDVDG~~~ 135 (216)
+=..++.++|..+.... +....|-+|....+..+. +|+|++=.|- +-..+.+.+.++ ..-+
T Consensus 62 SFe~A~~~LGg~~~~~~~~~s~~~kgEsl~Dtarvls~y~----~D~iv~R~~~----~~~~~~~a~~~~------~vPv 127 (310)
T PRK13814 62 SFEIAAKRLGAMVLNPNLKISAISKGETLFDTIKTLEAMG----VYFFIVRHSE----NETPEQIAKQLS------SGVV 127 (310)
T ss_pred HHHHHHHHhCCeEEECCCccccCCCCCCHHHHHHHHHHhC----CCEEEEeCCc----hhHHHHHHHhCC------CCCe
Confidence 44778889998765532 111123445555555552 3577776553 443344433321 1445
Q ss_pred cchhHhhcCCCCCcccCCHHH-HHHHHHHhCCCCCCCeEEEecCC--CcccHHHHHHhhhCCC-EEEEecCCC
Q psy7981 136 INEGRVAIGDMNGFIPCTPNG-VLELIKRTNVTIAGTNAVVLGRS--KIVGTPAAELLKWKHA-TVTVCHSKT 204 (216)
Q Consensus 136 ~n~G~l~~~~~~~~~PcTa~a-v~~lL~~~~i~l~Gk~vvViGrS--~~VG~Pla~lL~~~~A-TVtichs~T 204 (216)
+|.|. | ....||=+.+ ++.+.++.| +++|++|++||-. +.|...+..++..-|+ .|++|+=..
T Consensus 128 INag~---g--~~~HPtQaLaDl~Ti~e~~g-~l~g~~va~vGD~~~~rv~~Sl~~~~a~~g~~~v~~~~P~~ 194 (310)
T PRK13814 128 INAGD---G--NHQHPSQALIDLMTIKQHKP-HWNKLCVTIIGDIRHSRVANSLMDGLVTMGVPEIRLVGPSS 194 (310)
T ss_pred EECCc---C--CCCCchHHHHHHHHHHHHhC-CcCCcEEEEECCCCCCcHHHHHHHHHHHcCCCEEEEeCCcc
Confidence 67532 1 3688998887 555656666 5899999999976 6888999999999998 999998544
No 100
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=92.98 E-value=0.24 Score=47.31 Aligned_cols=53 Identities=28% Similarity=0.286 Sum_probs=44.8
Q ss_pred ccCCHHHHHHHH----HHhCCCCCCCeEEEecCCCcccHHHHHHhhhCCCEEE-EecCC
Q psy7981 150 IPCTPNGVLELI----KRTNVTIAGTNAVVLGRSKIVGTPAAELLKWKHATVT-VCHSK 203 (216)
Q Consensus 150 ~PcTa~av~~lL----~~~~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~ATVt-ichs~ 203 (216)
-+.|..|++..+ ++.+.+++||+|+|=|-+ .||.-++..|.+.||+|. ++.+.
T Consensus 213 ~eATG~Gv~~~~~~~l~~~~~~l~Gk~VaVqG~G-nVg~~aa~~L~e~GakVVavSD~~ 270 (454)
T PTZ00079 213 PEATGYGLVYFVLEVLKKLNDSLEGKTVVVSGSG-NVAQYAVEKLLQLGAKVLTMSDSD 270 (454)
T ss_pred CcccHHHHHHHHHHHHHHcCCCcCCCEEEEECCC-HHHHHHHHHHHHCCCEEEEEEcCC
Confidence 457999977655 556899999999999975 569999999999999988 88887
No 101
>PRK10014 DNA-binding transcriptional repressor MalI; Provisional
Probab=92.76 E-value=0.99 Score=39.70 Aligned_cols=89 Identities=16% Similarity=0.171 Sum_probs=54.4
Q ss_pred hhcccHH-HHHHHHHHHHHHHHHHHhcCCCCCc-------------eEEEEEeC-CCcchHHHHHHHHHHHHHcCcceEE
Q psy7981 11 QILSGTA-VSGDIREGLKERVKKLKERLPDFEP-------------GLAIVQVG-GREDSNVYIRMKMKAAKEIGIDAQH 75 (216)
Q Consensus 11 ~il~Gk~-vA~~i~~~ik~~v~~l~~~~~~~~P-------------~LaiI~vg-~~~as~~Yv~~k~k~a~~~Gi~~~~ 75 (216)
++|+|+. |+++.++++.+.+++| |+.| .++++.-+ +++-.....+...++|++.|.....
T Consensus 25 r~Ln~~~~vs~~tr~~V~~~a~el-----gY~p~~~a~~l~~~~~~~Igvv~~~~~~~~~~~i~~gi~~~a~~~g~~~~~ 99 (342)
T PRK10014 25 LVLSGKGRISTATGERVNQAIEEL-----GFVRNRQASALRGGQSGVIGLIVRDLSAPFYAELTAGLTEALEAQGRMVFL 99 (342)
T ss_pred HHHCCCCCCCHHHHHHHHHHHHHh-----CCCcCHHHHhhccCCCCEEEEEeCCCccchHHHHHHHHHHHHHHcCCEEEE
Confidence 5677764 6666777666666555 3333 45555432 2333334456678899999987765
Q ss_pred EeCCCCCCHHHHHHHHHHhcCCCCccEEEEeC
Q psy7981 76 VKLPRSITEIELLSRLKKLNEDPSVHGIIVQM 107 (216)
Q Consensus 76 ~~l~~~~~~~el~~~I~~lN~D~~V~GIlvql 107 (216)
... +.+.++..+.++.+.. .+++|||+.-
T Consensus 100 ~~~--~~~~~~~~~~~~~l~~-~~vdgiIi~~ 128 (342)
T PRK10014 100 LQG--GKDGEQLAQRFSTLLN-QGVDGVVIAG 128 (342)
T ss_pred EeC--CCCHHHHHHHHHHHHh-CCCCEEEEeC
Confidence 433 3344555666666643 4699999963
No 102
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=92.76 E-value=0.28 Score=45.80 Aligned_cols=43 Identities=28% Similarity=0.363 Sum_probs=37.6
Q ss_pred HHHHHhCCCCCCCeEEEecCCCcccHHHHHHhhhCCCEEEEecC
Q psy7981 159 ELIKRTNVTIAGTNAVVLGRSKIVGTPAAELLKWKHATVTVCHS 202 (216)
Q Consensus 159 ~lL~~~~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~ATVtichs 202 (216)
.+.++.+.++.||+|.|||-++ +|+.++..|..-|..|..|..
T Consensus 105 ~l~r~~g~~l~gktvGIIG~G~-IG~~va~~l~a~G~~V~~~Dp 147 (381)
T PRK00257 105 TLAEREGVDLAERTYGVVGAGH-VGGRLVRVLRGLGWKVLVCDP 147 (381)
T ss_pred HHhcccCCCcCcCEEEEECCCH-HHHHHHHHHHHCCCEEEEECC
Confidence 3445668899999999999998 599999999999999999964
No 103
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=92.70 E-value=0.21 Score=47.19 Aligned_cols=50 Identities=30% Similarity=0.364 Sum_probs=41.6
Q ss_pred CHHH-HHHHHHHhCCCCCCCeEEEecCCCcccHHHHHHhhhCCCEEEEecCC
Q psy7981 153 TPNG-VLELIKRTNVTIAGTNAVVLGRSKIVGTPAAELLKWKHATVTVCHSK 203 (216)
Q Consensus 153 Ta~a-v~~lL~~~~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~ATVtichs~ 203 (216)
|-++ +-.+++.+++.+.|++|+|+|.+.+ |+-++..+...||.|+++...
T Consensus 184 ~g~s~~~~i~r~t~~~l~GktVvViG~G~I-G~~va~~ak~~Ga~ViV~d~d 234 (413)
T cd00401 184 CRESLIDGIKRATDVMIAGKVAVVAGYGDV-GKGCAQSLRGQGARVIVTEVD 234 (413)
T ss_pred hchhhHHHHHHhcCCCCCCCEEEEECCCHH-HHHHHHHHHHCCCEEEEEECC
Confidence 4454 4456666799999999999999975 999999999999999998653
No 104
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=92.62 E-value=0.2 Score=43.23 Aligned_cols=51 Identities=29% Similarity=0.329 Sum_probs=46.1
Q ss_pred CCHHHHHHHHHHhCCCCCCCeEEEecCCCcccHHHHHHhhhCCCE---EEEecCC
Q psy7981 152 CTPNGVLELIKRTNVTIAGTNAVVLGRSKIVGTPAAELLKWKHAT---VTVCHSK 203 (216)
Q Consensus 152 cTa~av~~lL~~~~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~AT---Vtichs~ 203 (216)
.|-.|++.-++..+.+++|++|+|+|.+.. |+-++.+|...|++ ++++.++
T Consensus 7 v~lAG~~~al~~~g~~l~~~rvlvlGAGgA-g~aiA~~L~~~G~~~~~i~ivdr~ 60 (226)
T cd05311 7 VTLAGLLNALKLVGKKIEEVKIVINGAGAA-GIAIARLLLAAGAKPENIVVVDSK 60 (226)
T ss_pred HHHHHHHHHHHHhCCCccCCEEEEECchHH-HHHHHHHHHHcCcCcceEEEEeCC
Confidence 456788999999999999999999999765 99999999999997 9999987
No 105
>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]
Probab=92.61 E-value=0.32 Score=45.92 Aligned_cols=56 Identities=29% Similarity=0.226 Sum_probs=45.4
Q ss_pred cccCCHHHHHHHH----HHhCCCCCCCeEEEecCCCcccHHHHHHhhhCCCEEEEecCCCC
Q psy7981 149 FIPCTPNGVLELI----KRTNVTIAGTNAVVLGRSKIVGTPAAELLKWKHATVTVCHSKTK 205 (216)
Q Consensus 149 ~~PcTa~av~~lL----~~~~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~ATVtichs~T~ 205 (216)
--++|+.|+.-.. ++++.+|+|++|+|=|-++ ||.-++..|...||.|..|.-...
T Consensus 182 r~~aTg~Gv~~~~~~a~~~~g~~l~G~rVaVQG~GN-Vg~~aa~~l~~~GAkvva~sds~g 241 (411)
T COG0334 182 RSEATGYGVFYAIREALKALGDDLEGARVAVQGFGN-VGQYAAEKLHELGAKVVAVSDSKG 241 (411)
T ss_pred CCcccceehHHHHHHHHHHcCCCcCCCEEEEECccH-HHHHHHHHHHHcCCEEEEEEcCCC
Confidence 4568999876554 5578889999999999665 699999999999999998865443
No 106
>PRK10703 DNA-binding transcriptional repressor PurR; Provisional
Probab=92.54 E-value=1.1 Score=39.36 Aligned_cols=88 Identities=16% Similarity=0.206 Sum_probs=55.7
Q ss_pred hhcccHH-HHHHHHHHHHHHHHHHHhcCCCCCc-------------eEEEEEeC-CCcchHHHHHHHHHHHHHcCcceEE
Q psy7981 11 QILSGTA-VSGDIREGLKERVKKLKERLPDFEP-------------GLAIVQVG-GREDSNVYIRMKMKAAKEIGIDAQH 75 (216)
Q Consensus 11 ~il~Gk~-vA~~i~~~ik~~v~~l~~~~~~~~P-------------~LaiI~vg-~~~as~~Yv~~k~k~a~~~Gi~~~~ 75 (216)
++|+|+. |+++-++.|.+.++++ |+.| .+++|.-+ +++--....+...+.|++.|.++..
T Consensus 20 rvLn~~~~vs~~tr~~V~~~a~el-----gY~pn~~a~~l~~~~~~~i~vi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~ 94 (341)
T PRK10703 20 HVINKTRFVAEETRNAVWAAIKEL-----HYSPSAVARSLKVNHTKSIGLLATSSEAPYFAEIIEAVEKNCYQKGYTLIL 94 (341)
T ss_pred HHHcCCCCCCHHHHHHHHHHHHHH-----CCCcCHHHHHHhhCCCCeEEEEeCCCCCchHHHHHHHHHHHHHHCCCEEEE
Confidence 5688763 7777777777777665 3333 45555433 2333334457788899999988766
Q ss_pred EeCCCCCCHHHHHHHHHHhcCCCCccEEEEe
Q psy7981 76 VKLPRSITEIELLSRLKKLNEDPSVHGIIVQ 106 (216)
Q Consensus 76 ~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq 106 (216)
..- .-+.++..+.|+.+-. .+++||++.
T Consensus 95 ~~~--~~~~~~~~~~i~~l~~-~~vdgiii~ 122 (341)
T PRK10703 95 CNA--WNNLEKQRAYLSMLAQ-KRVDGLLVM 122 (341)
T ss_pred EeC--CCCHHHHHHHHHHHHH-cCCCEEEEe
Confidence 543 3345555666666644 469999985
No 107
>PRK06196 oxidoreductase; Provisional
Probab=92.45 E-value=0.17 Score=44.68 Aligned_cols=44 Identities=20% Similarity=0.211 Sum_probs=37.7
Q ss_pred hCCCCCCCeEEEecCCCcccHHHHHHhhhCCCEEEEecCCCCCh
Q psy7981 164 TNVTIAGTNAVVLGRSKIVGTPAAELLKWKHATVTVCHSKTKNI 207 (216)
Q Consensus 164 ~~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~ATVtichs~T~~l 207 (216)
+..++.||.|+|.|.|.-+|+-++..|..+|++|+++.+....+
T Consensus 20 ~~~~l~~k~vlITGasggIG~~~a~~L~~~G~~Vv~~~R~~~~~ 63 (315)
T PRK06196 20 AGHDLSGKTAIVTGGYSGLGLETTRALAQAGAHVIVPARRPDVA 63 (315)
T ss_pred cCCCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence 35678999999999999999999999999999999876544333
No 108
>PRK10401 DNA-binding transcriptional regulator GalS; Provisional
Probab=91.96 E-value=2.4 Score=37.47 Aligned_cols=88 Identities=17% Similarity=0.200 Sum_probs=54.5
Q ss_pred hhcccHH-HHHHHHHHHHHHHHHHHhcCCCCCc-------------eEEEEEeC-CCcchHHHHHHHHHHHHHcCcceEE
Q psy7981 11 QILSGTA-VSGDIREGLKERVKKLKERLPDFEP-------------GLAIVQVG-GREDSNVYIRMKMKAAKEIGIDAQH 75 (216)
Q Consensus 11 ~il~Gk~-vA~~i~~~ik~~v~~l~~~~~~~~P-------------~LaiI~vg-~~~as~~Yv~~k~k~a~~~Gi~~~~ 75 (216)
++|+|+. |+++-++.+.+.++++ |+.| .++++.-+ .++--...++...+.|++.|.....
T Consensus 20 rvLn~~~~Vs~~tr~kV~~~a~el-----gY~pn~~a~~l~~~~~~~Igvi~~~~~~~f~~~l~~gi~~~~~~~gy~~~~ 94 (346)
T PRK10401 20 RVLNNSALVSADTREAVMKAVSEL-----GYRPNANAQALATQVSDTIGVVVMDVSDAFFGALVKAVDLVAQQHQKYVLI 94 (346)
T ss_pred HHHCCCCCCCHHHHHHHHHHHHHH-----CCCCCHHHHHhhcCCCCEEEEEeCCCCCccHHHHHHHHHHHHHHCCCEEEE
Confidence 5688764 6666667666666655 3444 46666532 2333333456778899999988776
Q ss_pred EeCCCCCCHHHHHHHHHHhcCCCCccEEEEe
Q psy7981 76 VKLPRSITEIELLSRLKKLNEDPSVHGIIVQ 106 (216)
Q Consensus 76 ~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq 106 (216)
..... +.++..+.++.+.. .+++||++.
T Consensus 95 ~~~~~--~~~~~~~~i~~l~~-~~vdGiIi~ 122 (346)
T PRK10401 95 GNSYH--EAEKERHAIEVLIR-QRCNALIVH 122 (346)
T ss_pred EcCCC--ChHHHHHHHHHHHh-cCCCEEEEe
Confidence 54433 33444456666543 469999996
No 109
>PRK06841 short chain dehydrogenase; Provisional
Probab=91.82 E-value=0.25 Score=41.61 Aligned_cols=37 Identities=32% Similarity=0.398 Sum_probs=33.9
Q ss_pred CCCCCCeEEEecCCCcccHHHHHHhhhCCCEEEEecC
Q psy7981 166 VTIAGTNAVVLGRSKIVGTPAAELLKWKHATVTVCHS 202 (216)
Q Consensus 166 i~l~Gk~vvViGrS~~VG~Pla~lL~~~~ATVtichs 202 (216)
.++.||+|+|.|.|.-+|.-++..|.++|++|.++.+
T Consensus 11 ~~~~~k~vlItGas~~IG~~la~~l~~~G~~Vi~~~r 47 (255)
T PRK06841 11 FDLSGKVAVVTGGASGIGHAIAELFAAKGARVALLDR 47 (255)
T ss_pred cCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeC
Confidence 4678999999999999999999999999999988765
No 110
>PRK09492 treR trehalose repressor; Provisional
Probab=91.09 E-value=2.1 Score=37.17 Aligned_cols=88 Identities=22% Similarity=0.301 Sum_probs=54.0
Q ss_pred hhcccHH-HHHHHHHHHHHHHHHHHhcCCCCCc-------------eEEEEEeC-CCcchHHHHHHHHHHHHHcCcceEE
Q psy7981 11 QILSGTA-VSGDIREGLKERVKKLKERLPDFEP-------------GLAIVQVG-GREDSNVYIRMKMKAAKEIGIDAQH 75 (216)
Q Consensus 11 ~il~Gk~-vA~~i~~~ik~~v~~l~~~~~~~~P-------------~LaiI~vg-~~~as~~Yv~~k~k~a~~~Gi~~~~ 75 (216)
++|+|++ ++.+-++.+.+.++++ |+.| .+++|.-. +++-....++...+.|++.|..+..
T Consensus 23 rvLn~~~~vs~~tr~rV~~~a~el-----gY~pn~~a~~l~~~~~~~Ig~i~~~~~~~~~~~~~~~i~~~~~~~gy~~~~ 97 (315)
T PRK09492 23 RVLNNESGVSEETRERVEAVINQH-----GFSPSKSARAMRGQSDKVVGIIVSRLDSLSENQAVRTMLPAFYEQGYDPII 97 (315)
T ss_pred HHhCCCCCCCHHHHHHHHHHHHHH-----CCCcCHHHHHhhcCCCCeEEEEecCCcCcccHHHHHHHHHHHHHcCCeEEE
Confidence 5687743 5556666665555554 3333 56666532 2344455677888999999988766
Q ss_pred EeCCCCCCHHHHHHHHHHhcCCCCccEEEEe
Q psy7981 76 VKLPRSITEIELLSRLKKLNEDPSVHGIIVQ 106 (216)
Q Consensus 76 ~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq 106 (216)
..... +.+...+.++.+.. .+|+||++.
T Consensus 98 ~~~~~--~~~~~~~~~~~l~~-~~vdgiIi~ 125 (315)
T PRK09492 98 MESQF--SPEKVNEHLGVLKR-RNVDGVILF 125 (315)
T ss_pred EecCC--ChHHHHHHHHHHHh-cCCCEEEEe
Confidence 54433 33444455665543 469999996
No 111
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=91.00 E-value=0.37 Score=45.00 Aligned_cols=44 Identities=16% Similarity=0.291 Sum_probs=38.1
Q ss_pred HHHHHHhCCCCCCCeEEEecCCCcccHHHHHHhhhCCCEEEEecC
Q psy7981 158 LELIKRTNVTIAGTNAVVLGRSKIVGTPAAELLKWKHATVTVCHS 202 (216)
Q Consensus 158 ~~lL~~~~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~ATVtichs 202 (216)
+.+.++.+.++.||+|.|||-+++ |+.++.+|..-|..|..|..
T Consensus 104 L~l~r~~g~~L~gktvGIIG~G~I-G~~vA~~l~a~G~~V~~~dp 147 (378)
T PRK15438 104 LMLAERDGFSLHDRTVGIVGVGNV-GRRLQARLEALGIKTLLCDP 147 (378)
T ss_pred HHHhccCCCCcCCCEEEEECcCHH-HHHHHHHHHHCCCEEEEECC
Confidence 334456788999999999999876 99999999999999999974
No 112
>PRK05854 short chain dehydrogenase; Provisional
Probab=90.96 E-value=0.28 Score=43.59 Aligned_cols=37 Identities=30% Similarity=0.235 Sum_probs=33.8
Q ss_pred CCCCCCeEEEecCCCcccHHHHHHhhhCCCEEEEecC
Q psy7981 166 VTIAGTNAVVLGRSKIVGTPAAELLKWKHATVTVCHS 202 (216)
Q Consensus 166 i~l~Gk~vvViGrS~~VG~Pla~lL~~~~ATVtichs 202 (216)
.+++||.++|.|-+.-+|+-++..|.++|++|.++-+
T Consensus 10 ~~l~gk~~lITGas~GIG~~~a~~La~~G~~Vil~~R 46 (313)
T PRK05854 10 PDLSGKRAVVTGASDGLGLGLARRLAAAGAEVILPVR 46 (313)
T ss_pred cccCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeC
Confidence 3678999999999999999999999999999998754
No 113
>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated
Probab=90.71 E-value=0.3 Score=45.93 Aligned_cols=44 Identities=23% Similarity=0.320 Sum_probs=38.1
Q ss_pred CCCCCCCeEEEecCCCcccHHHHHHhhhCCCEEEEecCCCCChH
Q psy7981 165 NVTIAGTNAVVLGRSKIVGTPAAELLKWKHATVTVCHSKTKNIQ 208 (216)
Q Consensus 165 ~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~ATVtichs~T~~l~ 208 (216)
...++||+|+|.|.|.-+|+-++..|.++|++|.++.+....+.
T Consensus 173 a~sl~gK~VLITGASgGIG~aLA~~La~~G~~Vi~l~r~~~~l~ 216 (406)
T PRK07424 173 ALSLKGKTVAVTGASGTLGQALLKELHQQGAKVVALTSNSDKIT 216 (406)
T ss_pred ccCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 35679999999999999999999999999999999876554443
No 114
>PRK05866 short chain dehydrogenase; Provisional
Probab=90.68 E-value=0.31 Score=42.92 Aligned_cols=41 Identities=27% Similarity=0.381 Sum_probs=36.0
Q ss_pred CCCCCCCeEEEecCCCcccHHHHHHhhhCCCEEEEecCCCC
Q psy7981 165 NVTIAGTNAVVLGRSKIVGTPAAELLKWKHATVTVCHSKTK 205 (216)
Q Consensus 165 ~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~ATVtichs~T~ 205 (216)
+..+.||+++|.|.|.-+|+-++..|.++|+.|.++-....
T Consensus 35 ~~~~~~k~vlItGasggIG~~la~~La~~G~~Vi~~~R~~~ 75 (293)
T PRK05866 35 PVDLTGKRILLTGASSGIGEAAAEQFARRGATVVAVARRED 75 (293)
T ss_pred CcCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence 45678999999999999999999999999999998866543
No 115
>PRK08192 aspartate carbamoyltransferase; Provisional
Probab=90.68 E-value=14 Score=34.08 Aligned_cols=126 Identities=17% Similarity=0.106 Sum_probs=78.1
Q ss_pred HHHHHHHHcCcceEEEeCCCCC---CHHHHHHHHHHhcCCCCccEEEEeCCCCCCCCCCHHHHhhhcCCCCCcccCCccc
Q psy7981 61 MKMKAAKEIGIDAQHVKLPRSI---TEIELLSRLKKLNEDPSVHGIIVQMPLDSDNDINAMLVTDSVSPEKDVDGLNTIN 137 (216)
Q Consensus 61 ~k~k~a~~~Gi~~~~~~l~~~~---~~~el~~~I~~lN~D~~V~GIlvqlPL~~P~~id~~~i~~~I~p~KDVDG~~~~n 137 (216)
+=..++.++|..+..+.-++++ ..|-+.+.++-|+.= +|+|++=.|- +-....+.+.. . +-.+|
T Consensus 61 SFe~A~~~LGg~~i~~~~~~~s~~~kgEsl~Dtarvls~y--~D~IviR~~~----~~~~~~~a~~~----~---vPVIN 127 (338)
T PRK08192 61 SFGCAFNLLGGHVRETTGMASSSLSKGESLYDTARVLSTY--SDVIAMRHPD----AGSVKEFAEGS----R---VPVIN 127 (338)
T ss_pred HHHHHHHHcCCcEEeecCcccccCCCCCCHHHHHHHHHHc--CCEEEEeCCc----hhHHHHHHHhC----C---CCEEE
Confidence 4477899999987753111211 124455555555443 7899987664 33333443322 2 33456
Q ss_pred hhHhhcCCCCCcccCCHHH-HHHHHHHh---CCCCCCCeEEEecCC--CcccHHHHHHhhh-CCCEEEEecCCC
Q psy7981 138 EGRVAIGDMNGFIPCTPNG-VLELIKRT---NVTIAGTNAVVLGRS--KIVGTPAAELLKW-KHATVTVCHSKT 204 (216)
Q Consensus 138 ~G~l~~~~~~~~~PcTa~a-v~~lL~~~---~i~l~Gk~vvViGrS--~~VG~Pla~lL~~-~~ATVtichs~T 204 (216)
.|- | ....||=+++ ++.+.+++ |-+++|++|++||-. +-|...+..+|.. .|+.|++|+=..
T Consensus 128 a~~---g--~~~HPtQaLaDl~Ti~e~~~~~g~~l~g~kia~vGD~~~~rv~~Sl~~~l~~~~g~~v~~~~P~~ 196 (338)
T PRK08192 128 GGD---G--SNEHPTQALLDLFTIQKELAHAGRGIDGMHIAMVGDLKFGRTVHSLSRLLCMYKNVSFTLVSPKE 196 (338)
T ss_pred CCC---C--CCCCcHHHHHHHHHHHHHhhccCCCcCCCEEEEECcCCCCchHHHHHHHHHHhcCCEEEEECCcc
Confidence 532 2 2578998888 55555655 346899999999975 4566776666653 499999998654
No 116
>PRK06701 short chain dehydrogenase; Provisional
Probab=90.55 E-value=0.42 Score=41.95 Aligned_cols=39 Identities=18% Similarity=0.250 Sum_probs=35.2
Q ss_pred CCCCCCeEEEecCCCcccHHHHHHhhhCCCEEEEecCCC
Q psy7981 166 VTIAGTNAVVLGRSKIVGTPAAELLKWKHATVTVCHSKT 204 (216)
Q Consensus 166 i~l~Gk~vvViGrS~~VG~Pla~lL~~~~ATVtichs~T 204 (216)
-+++||+++|.|.|.-+|.-++..|+++|+.|+++....
T Consensus 42 ~~~~~k~iLItGasggIG~~la~~l~~~G~~V~l~~r~~ 80 (290)
T PRK06701 42 GKLKGKVALITGGDSGIGRAVAVLFAKEGADIAIVYLDE 80 (290)
T ss_pred cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 467899999999999999999999999999999886653
No 117
>PRK06720 hypothetical protein; Provisional
Probab=90.49 E-value=0.43 Score=39.22 Aligned_cols=38 Identities=32% Similarity=0.341 Sum_probs=34.2
Q ss_pred CCCCCCeEEEecCCCcccHHHHHHhhhCCCEEEEecCC
Q psy7981 166 VTIAGTNAVVLGRSKIVGTPAAELLKWKHATVTVCHSK 203 (216)
Q Consensus 166 i~l~Gk~vvViGrS~~VG~Pla~lL~~~~ATVtichs~ 203 (216)
..++||.++|.|.+.-+|..++..|.++|++|.++-..
T Consensus 12 ~~l~gk~~lVTGa~~GIG~aia~~l~~~G~~V~l~~r~ 49 (169)
T PRK06720 12 MKLAGKVAIVTGGGIGIGRNTALLLAKQGAKVIVTDID 49 (169)
T ss_pred cccCCCEEEEecCCChHHHHHHHHHHHCCCEEEEEECC
Confidence 45789999999999999999999999999999988643
No 118
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=90.46 E-value=0.71 Score=43.21 Aligned_cols=54 Identities=17% Similarity=0.246 Sum_probs=44.5
Q ss_pred cCCHHHHHHHHHHh---CCCCCCCeEEEecCCC----------------cccHHHHHHhhhCCCEEEEecCCC
Q psy7981 151 PCTPNGVLELIKRT---NVTIAGTNAVVLGRSK----------------IVGTPAAELLKWKHATVTVCHSKT 204 (216)
Q Consensus 151 PcTa~av~~lL~~~---~i~l~Gk~vvViGrS~----------------~VG~Pla~lL~~~~ATVtichs~T 204 (216)
+++|.-++..+.+. +-+++||+|+|-|... -.|..++..|..+||.|+++|..+
T Consensus 163 ~~~~~~i~~~v~~~~~~~~~~~~~~vlit~g~t~E~iD~VR~itN~SSG~~g~~~a~~~~~~Ga~V~~~~g~~ 235 (390)
T TIGR00521 163 LAEPETIVKAAEREFSPKEDLEGKRVLITAGPTREPIDPVRFISNLSSGKMGLALAEAAYKRGADVTLITGPV 235 (390)
T ss_pred CCCHHHHHHHHHHHHhhccccCCceEEEecCCccCCCCceeeecCCCcchHHHHHHHHHHHCCCEEEEeCCCC
Confidence 67888887777653 2469999999999743 689999999999999999999654
No 119
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=90.44 E-value=2.4 Score=34.71 Aligned_cols=63 Identities=22% Similarity=0.201 Sum_probs=45.6
Q ss_pred ceEEEEEeCCCcchHHHHHHHHHHHHHcCcceEEEeCCCCCCHHHHHHHHHHhcCCCCccEEEEeC
Q psy7981 42 PGLAIVQVGGREDSNVYIRMKMKAAKEIGIDAQHVKLPRSITEIELLSRLKKLNEDPSVHGIIVQM 107 (216)
Q Consensus 42 P~LaiI~vg~~~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvql 107 (216)
|+.+||. | ..++..+.+.-.+.++++||.++.......-+.+++.+.++++++ ...+-|+.--
T Consensus 1 p~V~Ii~-g-s~SD~~~~~~a~~~L~~~gi~~~~~V~saHR~p~~l~~~~~~~~~-~~~~viIa~A 63 (150)
T PF00731_consen 1 PKVAIIM-G-STSDLPIAEEAAKTLEEFGIPYEVRVASAHRTPERLLEFVKEYEA-RGADVIIAVA 63 (150)
T ss_dssp -EEEEEE-S-SGGGHHHHHHHHHHHHHTT-EEEEEE--TTTSHHHHHHHHHHTTT-TTESEEEEEE
T ss_pred CeEEEEe-C-CHHHHHHHHHHHHHHHHcCCCEEEEEEeccCCHHHHHHHHHHhcc-CCCEEEEEEC
Confidence 5555544 4 345667778888999999999999999999999999999999987 3455555543
No 120
>PRK06197 short chain dehydrogenase; Provisional
Probab=90.34 E-value=0.31 Score=42.74 Aligned_cols=37 Identities=30% Similarity=0.270 Sum_probs=33.2
Q ss_pred CCCCCeEEEecCCCcccHHHHHHhhhCCCEEEEecCC
Q psy7981 167 TIAGTNAVVLGRSKIVGTPAAELLKWKHATVTVCHSK 203 (216)
Q Consensus 167 ~l~Gk~vvViGrS~~VG~Pla~lL~~~~ATVtichs~ 203 (216)
+++||.|+|.|-+.-+|+-++..|.++|++|.++...
T Consensus 13 ~~~~k~vlItGas~gIG~~~a~~l~~~G~~vi~~~r~ 49 (306)
T PRK06197 13 DQSGRVAVVTGANTGLGYETAAALAAKGAHVVLAVRN 49 (306)
T ss_pred cCCCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCC
Confidence 4689999999999999999999999999999877543
No 121
>PRK02929 L-arabinose isomerase; Provisional
Probab=90.26 E-value=1 Score=43.51 Aligned_cols=45 Identities=22% Similarity=0.187 Sum_probs=38.3
Q ss_pred cceEEEeCCCCCCHHHHHHHHHHhcCCCCccEEEEeCCCCCCCCC
Q psy7981 71 IDAQHVKLPRSITEIELLSRLKKLNEDPSVHGIIVQMPLDSDNDI 115 (216)
Q Consensus 71 i~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvqlPL~~P~~i 115 (216)
+.++.+..+--.+.+++.+.+++.|.|++++||+++++-|+|+..
T Consensus 44 ~~~~vv~~~~v~~~~~i~~~~~~~~~~~~~dgvi~~m~TFs~a~~ 88 (499)
T PRK02929 44 LPVKIVLKPVLTTPDEITAVCREANYDDNCAGVITWMHTFSPAKM 88 (499)
T ss_pred CCeEEEEcCccCCHHHHHHHHHHccccCCCcEEEEccCCCchHHH
Confidence 556666666667889999999999999999999999999887743
No 122
>PLN02253 xanthoxin dehydrogenase
Probab=90.23 E-value=0.4 Score=41.22 Aligned_cols=37 Identities=22% Similarity=0.315 Sum_probs=33.7
Q ss_pred CCCCCeEEEecCCCcccHHHHHHhhhCCCEEEEecCC
Q psy7981 167 TIAGTNAVVLGRSKIVGTPAAELLKWKHATVTVCHSK 203 (216)
Q Consensus 167 ~l~Gk~vvViGrS~~VG~Pla~lL~~~~ATVtichs~ 203 (216)
.+.||.++|.|-+.-+|+-++..|..+|++|.++...
T Consensus 15 ~l~~k~~lItGas~gIG~~la~~l~~~G~~v~~~~~~ 51 (280)
T PLN02253 15 RLLGKVALVTGGATGIGESIVRLFHKHGAKVCIVDLQ 51 (280)
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCC
Confidence 4689999999999999999999999999999988653
No 123
>PLN02494 adenosylhomocysteinase
Probab=89.74 E-value=0.51 Score=45.38 Aligned_cols=51 Identities=31% Similarity=0.337 Sum_probs=41.8
Q ss_pred CCHHHHHHHHHH-hCCCCCCCeEEEecCCCcccHHHHHHhhhCCCEEEEecCC
Q psy7981 152 CTPNGVLELIKR-TNVTIAGTNAVVLGRSKIVGTPAAELLKWKHATVTVCHSK 203 (216)
Q Consensus 152 cTa~av~~lL~~-~~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~ATVtichs~ 203 (216)
+|-+++++-|.+ +++.+.||+|+|+|-+. +|+-++..+...|+.|+++...
T Consensus 235 GtgqS~~d~i~r~t~i~LaGKtVvViGyG~-IGr~vA~~aka~Ga~VIV~e~d 286 (477)
T PLN02494 235 GCRHSLPDGLMRATDVMIAGKVAVICGYGD-VGKGCAAAMKAAGARVIVTEID 286 (477)
T ss_pred cccccHHHHHHHhcCCccCCCEEEEECCCH-HHHHHHHHHHHCCCEEEEEeCC
Confidence 455666655544 48889999999999995 5999999999999999998654
No 124
>PRK14987 gluconate operon transcriptional regulator; Provisional
Probab=89.54 E-value=3.3 Score=36.33 Aligned_cols=88 Identities=14% Similarity=0.183 Sum_probs=53.2
Q ss_pred hhcccHH-HHHHHHHHHHHHHHHHHhcCCCCCc-------------eEEEEEeC-CCcchHHHHHHHHHHHHHcCcceEE
Q psy7981 11 QILSGTA-VSGDIREGLKERVKKLKERLPDFEP-------------GLAIVQVG-GREDSNVYIRMKMKAAKEIGIDAQH 75 (216)
Q Consensus 11 ~il~Gk~-vA~~i~~~ik~~v~~l~~~~~~~~P-------------~LaiI~vg-~~~as~~Yv~~k~k~a~~~Gi~~~~ 75 (216)
++|+|++ ++.+.++.+.+.+++| |+.| .+++|.-. .++--....+...+.|++.|.++..
T Consensus 24 rvLn~~~~vs~~tr~rV~~~a~el-----gY~pn~~a~~l~~~~~~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~ 98 (331)
T PRK14987 24 RFLRNPEQVSVALRGKIAAALDEL-----GYIPNRAPDILSNATSRAIGVLLPSLTNQVFAEVLRGIESVTDAHGYQTML 98 (331)
T ss_pred hhhCCCCCCCHHHHHHHHHHHHHh-----CCCccHHHHHHhhCCCCEEEEEeCCCcchhHHHHHHHHHHHHHHCCCEEEE
Confidence 5788875 7777777777766665 3333 44554421 1232333456788899999988876
Q ss_pred EeCCCCCCHHHHHHHHHHhcCCCCccEEEEe
Q psy7981 76 VKLPRSITEIELLSRLKKLNEDPSVHGIIVQ 106 (216)
Q Consensus 76 ~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq 106 (216)
.....+ .+...+.++.+. +..|+||++.
T Consensus 99 ~~~~~~--~~~~~~~~~~~~-~~~vdgiI~~ 126 (331)
T PRK14987 99 AHYGYK--PEMEQERLESML-SWNIDGLILT 126 (331)
T ss_pred ecCCCC--HHHHHHHHHHHH-hcCCCEEEEc
Confidence 554332 233334555553 3579999995
No 125
>PRK06128 oxidoreductase; Provisional
Probab=89.48 E-value=0.51 Score=41.39 Aligned_cols=36 Identities=17% Similarity=0.263 Sum_probs=33.0
Q ss_pred CCCCCeEEEecCCCcccHHHHHHhhhCCCEEEEecC
Q psy7981 167 TIAGTNAVVLGRSKIVGTPAAELLKWKHATVTVCHS 202 (216)
Q Consensus 167 ~l~Gk~vvViGrS~~VG~Pla~lL~~~~ATVtichs 202 (216)
.++||+|+|.|-|.-+|+-++..|.++|+.|.++..
T Consensus 52 ~l~~k~vlITGas~gIG~~~a~~l~~~G~~V~i~~~ 87 (300)
T PRK06128 52 RLQGRKALITGADSGIGRATAIAFAREGADIALNYL 87 (300)
T ss_pred ccCCCEEEEecCCCcHHHHHHHHHHHcCCEEEEEeC
Confidence 378999999999999999999999999999988654
No 126
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=89.46 E-value=0.68 Score=42.19 Aligned_cols=37 Identities=19% Similarity=0.325 Sum_probs=33.1
Q ss_pred CCCCCCeEEEecCCCcccHHHHHHhhhCCCEEEEecCC
Q psy7981 166 VTIAGTNAVVLGRSKIVGTPAAELLKWKHATVTVCHSK 203 (216)
Q Consensus 166 i~l~Gk~vvViGrS~~VG~Pla~lL~~~~ATVtichs~ 203 (216)
.++.|++|.|||-+.+ |+++|.+|...|+.|+.+...
T Consensus 142 ~~l~g~~VgIIG~G~I-G~~vA~~L~~~G~~V~~~d~~ 178 (330)
T PRK12480 142 KPVKNMTVAIIGTGRI-GAATAKIYAGFGATITAYDAY 178 (330)
T ss_pred cccCCCEEEEECCCHH-HHHHHHHHHhCCCEEEEEeCC
Confidence 4789999999999875 999999999999999988754
No 127
>PRK04523 N-acetylornithine carbamoyltransferase; Reviewed
Probab=89.32 E-value=14 Score=33.93 Aligned_cols=172 Identities=18% Similarity=0.057 Sum_probs=96.5
Q ss_pred hcccHHHHHHHHHHHHHHHHHHHhcCC---CCCceEEEEEeCCCcchHHHHHHHHHHHHHcCcceEEEeCCCC-------
Q psy7981 12 ILSGTAVSGDIREGLKERVKKLKERLP---DFEPGLAIVQVGGREDSNVYIRMKMKAAKEIGIDAQHVKLPRS------- 81 (216)
Q Consensus 12 il~Gk~vA~~i~~~ik~~v~~l~~~~~---~~~P~LaiI~vg~~~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~------- 81 (216)
+|+-+.+.++=.+.|-+....++.... -..-.++.+..- .|-.---+=.-++.++|-++....-...
T Consensus 6 ll~i~dl~~~ei~~ll~~A~~~k~~~~~~~L~gk~l~~lF~e---pSTRTR~SFe~A~~~LGg~~i~l~~~~ss~~~e~~ 82 (335)
T PRK04523 6 FLNTQDWSRAELDALLTQAAAFKRNKLGSALKGKSIALVFFN---PSLRTRTSFELGAFQLGGHAVVLQPGKDAWPIEFE 82 (335)
T ss_pred cCchhhCCHHHHHHHHHHHHHHHhcccCccCCCCEEEEEEcC---CCchhHHHHHHHHHHcCCeEEEeCcccccchhhcc
Confidence 344444444444455555555543110 011244554442 3333333447788999998876643321
Q ss_pred -------CCHHHHHHHHHHhcCCCCccEEEEeCCCCCCCCCC-----HHHHhhhcCCCCCcccCCccchhHhhcCCCCCc
Q psy7981 82 -------ITEIELLSRLKKLNEDPSVHGIIVQMPLDSDNDIN-----AMLVTDSVSPEKDVDGLNTINEGRVAIGDMNGF 149 (216)
Q Consensus 82 -------~~~~el~~~I~~lN~D~~V~GIlvqlPL~~P~~id-----~~~i~~~I~p~KDVDG~~~~n~G~l~~~~~~~~ 149 (216)
...|.+.+.++-|+.= +|+|++-.|- .+.+ +...++.+...-+ +-.+|. ++ . .
T Consensus 83 ~g~~~~~~kgEsl~Dtarvls~~--~D~iv~R~~~---~g~~~~~~~~~~~~~~~a~~s~---vPVINa-----~~-~-~ 147 (335)
T PRK04523 83 LGAVMDGETEEHIREVARVLSRY--VDLIGVRAFP---KFVDWSKDRQDQVLNSFAKYST---VPVINM-----ET-I-T 147 (335)
T ss_pred cccccCCCCCcCHHHHHHHHHHh--CcEEEEeCCc---cccccccchhHHHHHHHHHhCC---CCEEEC-----CC-C-C
Confidence 0225556666666544 8899998773 2221 1122222222222 444564 22 3 7
Q ss_pred ccCCHHHH-HHHHHHhCCCC-CCCeEEEec--CC----CcccHHHHHHhhhCCCEEEEecC
Q psy7981 150 IPCTPNGV-LELIKRTNVTI-AGTNAVVLG--RS----KIVGTPAAELLKWKHATVTVCHS 202 (216)
Q Consensus 150 ~PcTa~av-~~lL~~~~i~l-~Gk~vvViG--rS----~~VG~Pla~lL~~~~ATVtichs 202 (216)
.||=+++= +.+.++.| ++ +|++|+|++ -. ..|-+.+..++..-|+.|++|+=
T Consensus 148 HPtQaLaDl~Ti~e~~g-~~~~g~ki~i~~~gd~~~~~~~v~~S~~~~~~~~g~~v~~~~P 207 (335)
T PRK04523 148 HPCQELAHALALQEHFG-TTLRGKKYVLTWTYHPKPLNTAVANSALLIATRLGMDVTLLCP 207 (335)
T ss_pred ChHHHHHHHHHHHHHhC-CccCCCEEEEEEeccCcccccHHHHHHHHHHHHcCCEEEEECC
Confidence 89988884 45555666 47 899997764 32 25677888888888999999985
No 128
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=89.07 E-value=0.51 Score=40.24 Aligned_cols=35 Identities=20% Similarity=0.137 Sum_probs=31.4
Q ss_pred CCCCCeEEEecCCCcccHHHHHHhhhCCCEEEEec
Q psy7981 167 TIAGTNAVVLGRSKIVGTPAAELLKWKHATVTVCH 201 (216)
Q Consensus 167 ~l~Gk~vvViGrS~~VG~Pla~lL~~~~ATVtich 201 (216)
...+++|+|+|.|..+|+.++..|+++|++|+..-
T Consensus 14 ~~~~~~ilItGasG~iG~~l~~~L~~~g~~V~~~~ 48 (251)
T PLN00141 14 NVKTKTVFVAGATGRTGKRIVEQLLAKGFAVKAGV 48 (251)
T ss_pred cccCCeEEEECCCcHHHHHHHHHHHhCCCEEEEEe
Confidence 45689999999999999999999999999998763
No 129
>PRK07985 oxidoreductase; Provisional
Probab=88.76 E-value=0.66 Score=40.76 Aligned_cols=36 Identities=22% Similarity=0.231 Sum_probs=33.2
Q ss_pred CCCCCeEEEecCCCcccHHHHHHhhhCCCEEEEecC
Q psy7981 167 TIAGTNAVVLGRSKIVGTPAAELLKWKHATVTVCHS 202 (216)
Q Consensus 167 ~l~Gk~vvViGrS~~VG~Pla~lL~~~~ATVtichs 202 (216)
.++||+++|.|.|.-+|+-++..|+++|++|.++..
T Consensus 46 ~~~~k~vlITGas~gIG~aia~~L~~~G~~Vi~~~~ 81 (294)
T PRK07985 46 RLKDRKALVTGGDSGIGRAAAIAYAREGADVAISYL 81 (294)
T ss_pred ccCCCEEEEECCCCcHHHHHHHHHHHCCCEEEEecC
Confidence 479999999999999999999999999999988653
No 130
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=88.64 E-value=0.87 Score=43.11 Aligned_cols=49 Identities=22% Similarity=0.348 Sum_probs=43.7
Q ss_pred CHHHHHHHHHHhCCCCCCCeEEEecCCCcccHHHHHHhhhCC-CEEEEecC
Q psy7981 153 TPNGVLELIKRTNVTIAGTNAVVLGRSKIVGTPAAELLKWKH-ATVTVCHS 202 (216)
Q Consensus 153 Ta~av~~lL~~~~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~-ATVtichs 202 (216)
-+-+.+++.++..-+|+||+|+|||.+.. |.-++..|..+| .-||||++
T Consensus 161 i~saAv~lA~~~~~~L~~~~vlvIGAGem-~~lva~~L~~~g~~~i~IaNR 210 (414)
T COG0373 161 ISSAAVELAKRIFGSLKDKKVLVIGAGEM-GELVAKHLAEKGVKKITIANR 210 (414)
T ss_pred hHHHHHHHHHHHhcccccCeEEEEcccHH-HHHHHHHHHhCCCCEEEEEcC
Confidence 56789999999988899999999999998 888999999998 67889875
No 131
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=88.52 E-value=0.58 Score=44.23 Aligned_cols=36 Identities=22% Similarity=0.248 Sum_probs=32.8
Q ss_pred CCCCCCeEEEecCCCcccHHHHHHhhhCCCEEEEecC
Q psy7981 166 VTIAGTNAVVLGRSKIVGTPAAELLKWKHATVTVCHS 202 (216)
Q Consensus 166 i~l~Gk~vvViGrS~~VG~Pla~lL~~~~ATVtichs 202 (216)
.+++||+|+|||.+.. |-=++.-|...+++||+..+
T Consensus 171 ~~~~GKrV~VIG~GaS-A~di~~~l~~~ga~vt~~qR 206 (443)
T COG2072 171 EDLRGKRVLVIGAGAS-AVDIAPELAEVGASVTLSQR 206 (443)
T ss_pred cccCCCeEEEECCCcc-HHHHHHHHHhcCCeeEEEec
Confidence 5799999999999998 89999999999999999765
No 132
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=88.48 E-value=0.58 Score=38.06 Aligned_cols=36 Identities=22% Similarity=0.238 Sum_probs=30.5
Q ss_pred CCCCCeEEEecCCCcccHHHHHHhhhCCCEEEEecCC
Q psy7981 167 TIAGTNAVVLGRSKIVGTPAAELLKWKHATVTVCHSK 203 (216)
Q Consensus 167 ~l~Gk~vvViGrS~~VG~Pla~lL~~~~ATVtichs~ 203 (216)
+++||+|+|||-+.. +.=++..|.+.+..||+.++.
T Consensus 164 ~~~~k~V~VVG~G~S-A~d~a~~l~~~g~~V~~~~R~ 199 (203)
T PF13738_consen 164 DFKGKRVVVVGGGNS-AVDIAYALAKAGKSVTLVTRS 199 (203)
T ss_dssp GCTTSEEEEE--SHH-HHHHHHHHTTTCSEEEEEESS
T ss_pred hcCCCcEEEEcChHH-HHHHHHHHHhhCCEEEEEecC
Confidence 689999999999875 888999999999999999875
No 133
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=87.54 E-value=0.89 Score=40.87 Aligned_cols=41 Identities=20% Similarity=0.222 Sum_probs=36.1
Q ss_pred hCCCCCCCeEEEecCCCcccHHHHHHhhhCCCEEEEecCCC
Q psy7981 164 TNVTIAGTNAVVLGRSKIVGTPAAELLKWKHATVTVCHSKT 204 (216)
Q Consensus 164 ~~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~ATVtichs~T 204 (216)
+..-+++|+|+|.|.+..+|..|...|+++|.+|+.+...+
T Consensus 9 ~~~~~~~~~vlVtGatGfiG~~lv~~L~~~g~~V~~~d~~~ 49 (348)
T PRK15181 9 TKLVLAPKRWLITGVAGFIGSGLLEELLFLNQTVIGLDNFS 49 (348)
T ss_pred hcccccCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 45667899999999999999999999999999998886544
No 134
>cd03557 L-arabinose_isomerase L-Arabinose isomerase (AI) catalyzes the isomerization of L-arabinose to L-ribulose, the first reaction in its conversion into D-xylulose-5-phosphate, an intermediate in the pentose phosphate pathway, which allows L-arabinose to be used as a carbon source. AI can also convert D-galactose to D-tagatose at elevated temperatures in the presence of divalent metal ions. D-tagatose, rarely found in nature, is of commercial interest as a low-calorie sugar substitute.
Probab=87.35 E-value=1.6 Score=42.17 Aligned_cols=45 Identities=24% Similarity=0.237 Sum_probs=39.1
Q ss_pred cceEEEeCCCCCCHHHHHHHHHHhcCCCCccEEEEeCCCCCCCCC
Q psy7981 71 IDAQHVKLPRSITEIELLSRLKKLNEDPSVHGIIVQMPLDSDNDI 115 (216)
Q Consensus 71 i~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvqlPL~~P~~i 115 (216)
+.++++..+--.+.+++.+.+++.|.|++++||+++++-|+|+..
T Consensus 38 ~~~~v~~~~~v~~~~~i~~~~~~~~~~~~~dgvi~~m~TFs~a~~ 82 (484)
T cd03557 38 LPVKIVFKPVLTTPDEILAVCREANADDNCAGVITWMHTFSPAKM 82 (484)
T ss_pred CCeEEEEccccCCHHHHHHHHHHccccCCccEEEEccCCCchHHH
Confidence 567777777778899999999999999999999999999887743
No 135
>PLN02928 oxidoreductase family protein
Probab=87.32 E-value=1.3 Score=40.73 Aligned_cols=38 Identities=21% Similarity=0.241 Sum_probs=33.8
Q ss_pred CCCCCCCeEEEecCCCcccHHHHHHhhhCCCEEEEecCC
Q psy7981 165 NVTIAGTNAVVLGRSKIVGTPAAELLKWKHATVTVCHSK 203 (216)
Q Consensus 165 ~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~ATVtichs~ 203 (216)
+.++.||++.|||-+.+ |+.+|.+|..-|+.|+.+...
T Consensus 154 ~~~l~gktvGIiG~G~I-G~~vA~~l~afG~~V~~~dr~ 191 (347)
T PLN02928 154 GDTLFGKTVFILGYGAI-GIELAKRLRPFGVKLLATRRS 191 (347)
T ss_pred ccCCCCCEEEEECCCHH-HHHHHHHHhhCCCEEEEECCC
Confidence 35799999999999876 999999999999999998653
No 136
>PRK13376 pyrB bifunctional aspartate carbamoyltransferase catalytic subunit/aspartate carbamoyltransferase regulatory subunit; Provisional
Probab=87.26 E-value=31 Score=33.83 Aligned_cols=139 Identities=13% Similarity=0.057 Sum_probs=80.5
Q ss_pred HHHHHHHHc-CcceEEEeCCCC--CCHHHHHHHHHHhcCCCCccEEEEeCCCCCCCCCC-HHHHhhhcCCCCCcccCCcc
Q psy7981 61 MKMKAAKEI-GIDAQHVKLPRS--ITEIELLSRLKKLNEDPSVHGIIVQMPLDSDNDIN-AMLVTDSVSPEKDVDGLNTI 136 (216)
Q Consensus 61 ~k~k~a~~~-Gi~~~~~~l~~~--~~~~el~~~I~~lN~D~~V~GIlvqlPL~~P~~id-~~~i~~~I~p~KDVDG~~~~ 136 (216)
+=.-++.++ |..+....-... ...|-+.+.++-|+.=-+-++|++=.|..+ -.+ ..+.+..+...-.|+-...+
T Consensus 67 SFE~A~~~LgGg~~i~l~~~~ssl~kGESl~DTarvLs~y~D~d~IviR~~~~g--~~~~~~~~l~~~a~~s~vpVp~VI 144 (525)
T PRK13376 67 SFINAAKFHKNVKVNIFDSEHSSFNKQESYTDTFNMLTGYSDYSIFIVRTRLEG--VCRLLEEKVSEFASRNGIEVPAFI 144 (525)
T ss_pred HHHHHHHHcCCCcEEEcCCccccCCCCcCHHHHHHHHHHcCCCcEEEEeCCccc--hhHHHHHHHHHHHHhcCCCcceEE
Confidence 345677778 877765532211 112445555555544422238888877622 111 11111111111112211225
Q ss_pred chhHhhcCCCCCcccCCHHH-HHHHHHHhCCCCCCCeEEEecCC--CcccHHHHHHhhhCC-CEEEEecCCCCC
Q psy7981 137 NEGRVAIGDMNGFIPCTPNG-VLELIKRTNVTIAGTNAVVLGRS--KIVGTPAAELLKWKH-ATVTVCHSKTKN 206 (216)
Q Consensus 137 n~G~l~~~~~~~~~PcTa~a-v~~lL~~~~i~l~Gk~vvViGrS--~~VG~Pla~lL~~~~-ATVtichs~T~~ 206 (216)
|.|- | ..+.||=+++ ++.+.++.|.+++|++|++||-. ..|-+.+..+|..-| +.|++|+=.+-.
T Consensus 145 NAgd---g--~~~HPTQaLaDl~TI~E~~G~~l~glkVa~vGD~~~~rva~Sl~~~l~~~g~~~v~l~~P~~~~ 213 (525)
T PRK13376 145 NAGD---G--KHEHPTQELLDEFTFLEQNNFDNSFIHIALVGDLLHGRTVHSKVNGLKIFKNVKVDLIAPEELA 213 (525)
T ss_pred ECCC---C--CCCCchHHHHHHHHHHHHcCCCcCCCEEEEECCCCCCcHHHHHHHHHHhcCCcEEEEECCcccc
Confidence 6532 1 3688998887 66777777778999999999974 455667778777777 999999866643
No 137
>PRK13243 glyoxylate reductase; Reviewed
Probab=87.11 E-value=0.86 Score=41.51 Aligned_cols=38 Identities=16% Similarity=0.174 Sum_probs=33.6
Q ss_pred CCCCCCCeEEEecCCCcccHHHHHHhhhCCCEEEEecCC
Q psy7981 165 NVTIAGTNAVVLGRSKIVGTPAAELLKWKHATVTVCHSK 203 (216)
Q Consensus 165 ~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~ATVtichs~ 203 (216)
+.+|.||+|.|||-+.+ |+.+|.+|...|++|..+...
T Consensus 145 g~~L~gktvgIiG~G~I-G~~vA~~l~~~G~~V~~~d~~ 182 (333)
T PRK13243 145 GYDVYGKTIGIIGFGRI-GQAVARRAKGFGMRILYYSRT 182 (333)
T ss_pred ccCCCCCEEEEECcCHH-HHHHHHHHHHCCCEEEEECCC
Confidence 45799999999999776 999999999999999988753
No 138
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=87.11 E-value=0.85 Score=39.63 Aligned_cols=45 Identities=13% Similarity=0.138 Sum_probs=32.7
Q ss_pred CCCCCCCeEEEecCCCcccHHHHHHhhhCCCEEEEec-CCCCChHHH
Q psy7981 165 NVTIAGTNAVVLGRSKIVGTPAAELLKWKHATVTVCH-SKTKNIQDV 210 (216)
Q Consensus 165 ~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~ATVtich-s~T~~l~~~ 210 (216)
.++++|++|+|||-+.+ +.=-+..|++.||.||++- ..++.+.++
T Consensus 20 ~l~~~~~~VLVVGGG~V-A~RK~~~Ll~~gA~VtVVap~i~~el~~l 65 (223)
T PRK05562 20 SLLSNKIKVLIIGGGKA-AFIKGKTFLKKGCYVYILSKKFSKEFLDL 65 (223)
T ss_pred EEECCCCEEEEECCCHH-HHHHHHHHHhCCCEEEEEcCCCCHHHHHH
Confidence 46778999999998877 4555567777999999983 233445444
No 139
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=87.05 E-value=0.81 Score=37.62 Aligned_cols=42 Identities=21% Similarity=0.236 Sum_probs=35.5
Q ss_pred hCCCCCCCeEEEecCCCcccHHHHHHhhhCCCEEEEecCCCCC
Q psy7981 164 TNVTIAGTNAVVLGRSKIVGTPAAELLKWKHATVTVCHSKTKN 206 (216)
Q Consensus 164 ~~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~ATVtichs~T~~ 206 (216)
.+.++.||+|.|||-+.+ |+-++.+|..-|++|+.+..+.+.
T Consensus 30 ~~~~l~g~tvgIiG~G~I-G~~vA~~l~~fG~~V~~~d~~~~~ 71 (178)
T PF02826_consen 30 PGRELRGKTVGIIGYGRI-GRAVARRLKAFGMRVIGYDRSPKP 71 (178)
T ss_dssp TBS-STTSEEEEESTSHH-HHHHHHHHHHTT-EEEEEESSCHH
T ss_pred CccccCCCEEEEEEEcCC-cCeEeeeeecCCceeEEecccCCh
Confidence 467899999999999887 999999999999999999876553
No 140
>PLN02780 ketoreductase/ oxidoreductase
Probab=87.02 E-value=0.57 Score=42.04 Aligned_cols=40 Identities=20% Similarity=0.225 Sum_probs=35.0
Q ss_pred CCCeEEEecCCCcccHHHHHHhhhCCCEEEEecCCCCChH
Q psy7981 169 AGTNAVVLGRSKIVGTPAAELLKWKHATVTVCHSKTKNIQ 208 (216)
Q Consensus 169 ~Gk~vvViGrS~~VG~Pla~lL~~~~ATVtichs~T~~l~ 208 (216)
.|+.|+|.|.|.-+|+-++..|.++|++|.++.+....++
T Consensus 52 ~g~~~lITGAs~GIG~alA~~La~~G~~Vil~~R~~~~l~ 91 (320)
T PLN02780 52 YGSWALVTGPTDGIGKGFAFQLARKGLNLVLVARNPDKLK 91 (320)
T ss_pred cCCEEEEeCCCcHHHHHHHHHHHHCCCCEEEEECCHHHHH
Confidence 6999999999999999999999999999999876544444
No 141
>cd00578 L-fuc_L-ara-isomerases L-fucose isomerase (FucIase) and L-arabinose isomerase (AI) family; composed of FucIase, AI and similar proteins. FucIase converts L-fucose, an aldohexose, to its ketose form, which prepares it for aldol cleavage (similar to the isomerization of glucose in glycolysis). L-fucose (or 6-deoxy-L-galactose) is found in various oligo- and polysaccharides in mammals, bacteria and plants. AI catalyzes the isomerization of L-arabinose to L-ribulose, the first reaction in its conversion to D-xylulose-5-phosphate, an intermediate in the pentose phosphate pathway, which allows L-arabinose to be used as a carbon source. AI can also convert D-galactose to D-tagatose at elevated temperatures in the presence of divalent metal ions. D-tagatose, rarely found in nature, is of commercial interest as a low-calorie sugar substitute.
Probab=87.00 E-value=2.3 Score=40.02 Aligned_cols=71 Identities=23% Similarity=0.281 Sum_probs=49.8
Q ss_pred ceEEEEEeCCC---cch----HHHHHHHHHHHHHcCcceEEEeCCCCC-CHHHHHHHHHHhcCCCCccEEEEeCCCCCCC
Q psy7981 42 PGLAIVQVGGR---EDS----NVYIRMKMKAAKEIGIDAQHVKLPRSI-TEIELLSRLKKLNEDPSVHGIIVQMPLDSDN 113 (216)
Q Consensus 42 P~LaiI~vg~~---~as----~~Yv~~k~k~a~~~Gi~~~~~~l~~~~-~~~el~~~I~~lN~D~~V~GIlvqlPL~~P~ 113 (216)
|++.+|-.+.+ +.. .-|.+...+.-++.|+ +.+..+.-+ +.++..+..+++|++ +++||++.++-|+|+
T Consensus 1 ~~ig~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~vv~~~~~~~~~~~~~~~~~~~~~~-~~d~ii~~~~tf~~~ 77 (452)
T cd00578 1 PKIGFVTGSQHLYGEELLEQVEEYAREVADLLNELPV--EVVDKPEVTGTPDEARKAAEEFNEA-NCDGLIVWMHTFGPA 77 (452)
T ss_pred CEEEEEEecccccChhHHHHHHHHHHHHHHHHhcCCc--eEEecCcccCCHHHHHHHHHHHhhc-CCcEEEEcccccccH
Confidence 45666666655 333 3344444444455555 555566666 889999999999998 899999999988776
Q ss_pred CC
Q psy7981 114 DI 115 (216)
Q Consensus 114 ~i 115 (216)
+.
T Consensus 78 ~~ 79 (452)
T cd00578 78 KM 79 (452)
T ss_pred HH
Confidence 54
No 142
>PRK11041 DNA-binding transcriptional regulator CytR; Provisional
Probab=86.81 E-value=8.4 Score=33.10 Aligned_cols=86 Identities=12% Similarity=0.038 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHHHH--------hcCCCCCceEEEEEeC-CCcchHHHHHHHHHHHHHcCcceEEEeCCCCCCHHHHH
Q psy7981 18 VSGDIREGLKERVKKLK--------ERLPDFEPGLAIVQVG-GREDSNVYIRMKMKAAKEIGIDAQHVKLPRSITEIELL 88 (216)
Q Consensus 18 vA~~i~~~ik~~v~~l~--------~~~~~~~P~LaiI~vg-~~~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~ 88 (216)
|+++-++.+.+.+++|- .-..+....+++|.-. +++--....+...++|++.|.+........ ..+.-.
T Consensus 4 Vs~~Tr~rV~~~a~elgY~pn~~a~~l~~~~~~~ig~v~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~--~~~~~~ 81 (309)
T PRK11041 4 VSQATRQRVEQAVLEVGYSPQSLGRNLKRNESRTILVIVPDICDPFFSEIIRGIEVTAAEHGYLVLIGDCAH--QNQQEK 81 (309)
T ss_pred CCHHHHHHHHHHHHHHCCCcCHHHHHhhcCCCcEEEEEeCCCcCccHHHHHHHHHHHHHHCCCEEEEEeCCC--ChHHHH
Confidence 44555555555555540 0001223355555432 222233335778899999999887765443 333333
Q ss_pred HHHHHhcCCCCccEEEEe
Q psy7981 89 SRLKKLNEDPSVHGIIVQ 106 (216)
Q Consensus 89 ~~I~~lN~D~~V~GIlvq 106 (216)
+.++.+.. ..|+|||+.
T Consensus 82 ~~i~~l~~-~~vDgiIi~ 98 (309)
T PRK11041 82 TFVNLIIT-KQIDGMLLL 98 (309)
T ss_pred HHHHHHHH-cCCCEEEEe
Confidence 55555544 469999995
No 143
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=86.67 E-value=1.4 Score=40.54 Aligned_cols=48 Identities=19% Similarity=0.277 Sum_probs=38.1
Q ss_pred HHHHHHHHHHhCCCCCCCeEEEecCCCcccHHHHHHhhhCCC-EEEEecCC
Q psy7981 154 PNGVLELIKRTNVTIAGTNAVVLGRSKIVGTPAAELLKWKHA-TVTVCHSK 203 (216)
Q Consensus 154 a~av~~lL~~~~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~A-TVtichs~ 203 (216)
+.++..+.+.. -++.||+|+|||.+.+ |.=.+..|..+|+ .|++|++.
T Consensus 159 ~s~av~~~~~~-~~l~~k~vLvIGaGem-~~l~a~~L~~~g~~~i~v~nRt 207 (338)
T PRK00676 159 ESVVQQELRRR-QKSKKASLLFIGYSEI-NRKVAYYLQRQGYSRITFCSRQ 207 (338)
T ss_pred HHHHHHHHHHh-CCccCCEEEEEcccHH-HHHHHHHHHHcCCCEEEEEcCC
Confidence 34466777765 4699999999999987 7888888888885 59999864
No 144
>PRK07831 short chain dehydrogenase; Provisional
Probab=86.64 E-value=1.1 Score=38.09 Aligned_cols=42 Identities=17% Similarity=0.204 Sum_probs=34.1
Q ss_pred CCCCCeEEEecCCC-cccHHHHHHhhhCCCEEEEecCCCCChH
Q psy7981 167 TIAGTNAVVLGRSK-IVGTPAAELLKWKHATVTVCHSKTKNIQ 208 (216)
Q Consensus 167 ~l~Gk~vvViGrS~-~VG~Pla~lL~~~~ATVtichs~T~~l~ 208 (216)
.++||.++|.|-+. -+|+-++..|.++|++|+++.+....++
T Consensus 14 ~~~~k~vlItG~sg~gIG~~ia~~l~~~G~~V~~~~~~~~~~~ 56 (262)
T PRK07831 14 LLAGKVVLVTAAAGTGIGSATARRALEEGARVVISDIHERRLG 56 (262)
T ss_pred ccCCCEEEEECCCcccHHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence 45799999999874 6899999999999999998765443343
No 145
>PRK12367 short chain dehydrogenase; Provisional
Probab=86.53 E-value=0.89 Score=39.14 Aligned_cols=39 Identities=21% Similarity=0.188 Sum_probs=34.2
Q ss_pred CCCCCCeEEEecCCCcccHHHHHHhhhCCCEEEEecCCC
Q psy7981 166 VTIAGTNAVVLGRSKIVGTPAAELLKWKHATVTVCHSKT 204 (216)
Q Consensus 166 i~l~Gk~vvViGrS~~VG~Pla~lL~~~~ATVtichs~T 204 (216)
..++||.++|.|.|.-+|+-++..|.++|++|+++.+..
T Consensus 10 ~~l~~k~~lITGas~gIG~ala~~l~~~G~~Vi~~~r~~ 48 (245)
T PRK12367 10 STWQGKRIGITGASGALGKALTKAFRAKGAKVIGLTHSK 48 (245)
T ss_pred HhhCCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEECCc
Confidence 456899999999999999999999999999998765443
No 146
>PRK07201 short chain dehydrogenase; Provisional
Probab=86.07 E-value=0.77 Score=44.53 Aligned_cols=42 Identities=19% Similarity=0.236 Sum_probs=36.3
Q ss_pred CCCCCeEEEecCCCcccHHHHHHhhhCCCEEEEecCCCCChH
Q psy7981 167 TIAGTNAVVLGRSKIVGTPAAELLKWKHATVTVCHSKTKNIQ 208 (216)
Q Consensus 167 ~l~Gk~vvViGrS~~VG~Pla~lL~~~~ATVtichs~T~~l~ 208 (216)
+++||+++|.|-|.-+|+-++..|.++|++|.++.+....+.
T Consensus 368 ~~~~k~vlItGas~giG~~la~~l~~~G~~V~~~~r~~~~~~ 409 (657)
T PRK07201 368 PLVGKVVLITGASSGIGRATAIKVAEAGATVFLVARNGEALD 409 (657)
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHH
Confidence 578999999999999999999999999999999876544333
No 147
>TIGR02405 trehalos_R_Ecol trehalose operon repressor, proteobacterial. This family consists of repressors of the LacI family typically associated with trehalose utilization operons. Trehalose is imported as trehalose-6-phosphate and then hydrolyzed by alpha,alpha-phosphotrehalase to glucose and glucose-6-P. This family includes repressors mostly from Gammaproteobacteria and does not include the GntR family TreR of Bacillus subtilis
Probab=85.83 E-value=9.4 Score=33.22 Aligned_cols=93 Identities=15% Similarity=0.155 Sum_probs=53.6
Q ss_pred hhcccH-HHHHHHHHHHHHHHHHHH--------hcCCCCCceEEEEEeC-CCcchHHHHHHHHHHHHHcCcceEEEeCCC
Q psy7981 11 QILSGT-AVSGDIREGLKERVKKLK--------ERLPDFEPGLAIVQVG-GREDSNVYIRMKMKAAKEIGIDAQHVKLPR 80 (216)
Q Consensus 11 ~il~Gk-~vA~~i~~~ik~~v~~l~--------~~~~~~~P~LaiI~vg-~~~as~~Yv~~k~k~a~~~Gi~~~~~~l~~ 80 (216)
++|+|+ .|+++-++.+.+.++++- .-..+....+++|.-. +++-....++.....|++.|..........
T Consensus 20 r~Ln~~~~vs~~tr~rV~~~a~~lgY~pn~~a~~l~~~~~~~Ig~i~~~~~~~~~~~~~~~i~~~~~~~gy~~~i~~~~~ 99 (311)
T TIGR02405 20 RVLNNEPKVSIETRERVEQVIQQSGFVPSKSARAMRGGSDKVVAVIVSRLDSPSENLAVSGMLPVFYTAGYDPIIMESQF 99 (311)
T ss_pred HHhCCCCCCCHHHHHHHHHHHHHHCCCcCHHHHHhhcCCCCEEEEEeCCcccccHHHHHHHHHHHHHHCCCeEEEecCCC
Confidence 567775 366666666666555541 0001223355655422 244444557888999999999877664332
Q ss_pred CCCHHHHHHHHHHhcCCCCccEEEEe
Q psy7981 81 SITEIELLSRLKKLNEDPSVHGIIVQ 106 (216)
Q Consensus 81 ~~~~~el~~~I~~lN~D~~V~GIlvq 106 (216)
+.+...+.++.+. ..+|+|+|+.
T Consensus 100 --~~~~~~~~~~~l~-~~~vdGvIi~ 122 (311)
T TIGR02405 100 --SPQLTNEHLSVLQ-KRNVDGVILF 122 (311)
T ss_pred --ChHHHHHHHHHHH-hcCCCEEEEe
Confidence 3343444555553 3469999995
No 148
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=85.59 E-value=1.1 Score=31.67 Aligned_cols=33 Identities=30% Similarity=0.312 Sum_probs=28.1
Q ss_pred eEEEecCCCcccHHHHHHhhhCCCEEEEecCCCC
Q psy7981 172 NAVVLGRSKIVGTPAAELLKWKHATVTVCHSKTK 205 (216)
Q Consensus 172 ~vvViGrS~~VG~Pla~lL~~~~ATVtichs~T~ 205 (216)
+|+|||-+.+ |--+|..|...+..||++|..-.
T Consensus 1 ~vvViGgG~i-g~E~A~~l~~~g~~vtli~~~~~ 33 (80)
T PF00070_consen 1 RVVVIGGGFI-GIELAEALAELGKEVTLIERSDR 33 (80)
T ss_dssp EEEEESSSHH-HHHHHHHHHHTTSEEEEEESSSS
T ss_pred CEEEECcCHH-HHHHHHHHHHhCcEEEEEeccch
Confidence 5889997655 99999999999999999998654
No 149
>COG0281 SfcA Malic enzyme [Energy production and conversion]
Probab=85.54 E-value=3.9 Score=38.89 Aligned_cols=129 Identities=21% Similarity=0.249 Sum_probs=97.7
Q ss_pred HHHHHHHHH-HcCcceEEEeCCCCCCHHHHHHHHHHhcCCCCccEEEEeCCCCCCCCCCHHHHhhhcCCCCCcccCCccc
Q psy7981 59 IRMKMKAAK-EIGIDAQHVKLPRSITEIELLSRLKKLNEDPSVHGIIVQMPLDSDNDINAMLVTDSVSPEKDVDGLNTIN 137 (216)
Q Consensus 59 v~~k~k~a~-~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvqlPL~~P~~id~~~i~~~I~p~KDVDG~~~~n 137 (216)
...|.-..+ -.||++..++++.. +.+++.+.|+.+ .|.--||.++-= ++|+- ..+.....-+.|+.-||.--
T Consensus 103 meGKa~Lfk~faGid~~pI~ld~~-~~~ei~~~Vkal--~p~FgginLedi-~ap~c---f~ie~~lr~~~~IPvFhDDq 175 (432)
T COG0281 103 MEGKAVLFKAFAGIDVLPIELDVG-TNNEIIEFVKAL--EPTFGGINLEDI-DAPRC---FAIEERLRYRMNIPVFHDDQ 175 (432)
T ss_pred hhhHHHHHHHhcCCCceeeEeeCC-ChHHHHHHHHHh--hhcCCCcceeec-ccchh---hHHHHHHhhcCCCCcccccc
Confidence 344444443 35899999998865 457899999988 566888888732 12333 35556678888999999533
Q ss_pred hhHhhcCCCCCcccCCHHHHHHHHHHhCCCCCCCeEEEecCCCcccHHHHHHhhhCCCE---EEEecCCC
Q psy7981 138 EGRVAIGDMNGFIPCTPNGVLELIKRTNVTIAGTNAVVLGRSKIVGTPAAELLKWKHAT---VTVCHSKT 204 (216)
Q Consensus 138 ~G~l~~~~~~~~~PcTa~av~~lL~~~~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~AT---Vtichs~T 204 (216)
. +-.--|..|++.-|+-.|-+++-.++|+.|.+.- |--.+.+|...+++ +++|.|+-
T Consensus 176 q---------GTaiv~lA~llnalk~~gk~l~d~kiv~~GAGAA-giaia~~l~~~g~~~~~i~~~D~~G 235 (432)
T COG0281 176 Q---------GTAIVTLAALLNALKLTGKKLKDQKIVINGAGAA-GIAIADLLVAAGVKEENIFVVDRKG 235 (432)
T ss_pred c---------HHHHHHHHHHHHHHHHhCCCccceEEEEeCCcHH-HHHHHHHHHHhCCCcccEEEEecCC
Confidence 2 3334478899999999999999999999999876 99999999998885 99999883
No 150
>COG1609 PurR Transcriptional regulators [Transcription]
Probab=85.31 E-value=28 Score=31.38 Aligned_cols=181 Identities=23% Similarity=0.262 Sum_probs=101.6
Q ss_pred hhcccHH-HHHHHHHHHHHHHHHHHhcCCCCCc------------eEEEEEeC--CCcchHHHHHHHHHHHHHcCcceEE
Q psy7981 11 QILSGTA-VSGDIREGLKERVKKLKERLPDFEP------------GLAIVQVG--GREDSNVYIRMKMKAAKEIGIDAQH 75 (216)
Q Consensus 11 ~il~Gk~-vA~~i~~~ik~~v~~l~~~~~~~~P------------~LaiI~vg--~~~as~~Yv~~k~k~a~~~Gi~~~~ 75 (216)
++|+|.+ |+++-++++.+.+++| |..| ++..+.+. .++-....++.....|++.|....+
T Consensus 19 rvln~~~~Vs~eTr~kV~~a~~el-----gY~pN~~Ar~L~~~~s~~Ig~i~p~~~~~~~~~i~~gi~~~~~~~gy~~~l 93 (333)
T COG1609 19 RVLNGSPYVSEETREKVLAAIKEL-----GYRPNAVARSLRTGRTKTIGLVVPDITNPFFAEILKGIEEAAREAGYSLLL 93 (333)
T ss_pred HHHcCCCCCCHHHHHHHHHHHHHH-----CCCCCHHHHHHHhCCCCEEEEEeCCCCCchHHHHHHHHHHHHHHcCCEEEE
Confidence 6788886 7777777777777665 3333 23333333 2355566678999999999999988
Q ss_pred EeCCCCCCHHHHHHHHHHhcCCCCccEEEEeCCCCCCCCCCHHHHhhh-c--------CCCCCcccCCccchhHhhc---
Q psy7981 76 VKLPRSITEIELLSRLKKLNEDPSVHGIIVQMPLDSDNDINAMLVTDS-V--------SPEKDVDGLNTINEGRVAI--- 143 (216)
Q Consensus 76 ~~l~~~~~~~el~~~I~~lN~D~~V~GIlvqlPL~~P~~id~~~i~~~-I--------~p~KDVDG~~~~n~G~l~~--- 143 (216)
..... ++++....++.+ .+..|+|||+.-.- +.......+.+. + .+..+++.+..-|.+-.+.
T Consensus 94 ~~~~~--~~~~e~~~~~~l-~~~~vdGiIi~~~~--~~~~~~~~l~~~~~P~V~i~~~~~~~~~~~V~~Dn~~~~~~a~~ 168 (333)
T COG1609 94 ANTDD--DPEKEREYLETL-LQKRVDGLILLGER--PNDSLLELLAAAGIPVVVIDRSPPGLGVPSVGIDNFAGAYLATE 168 (333)
T ss_pred ECCCC--CHHHHHHHHHHH-HHcCCCEEEEecCC--CCHHHHHHHHhcCCCEEEEeCCCccCCCCEEEEChHHHHHHHHH
Confidence 87665 444444444444 44589999997422 222212222222 1 2345666666666553321
Q ss_pred -----CCCC-Ccc--c-CC------HHHHHHHHHHhCCCCCCCeEEEecC-CCcccHHHHHHhhhCC---CEEEEecC
Q psy7981 144 -----GDMN-GFI--P-CT------PNGVLELIKRTNVTIAGTNAVVLGR-SKIVGTPAAELLKWKH---ATVTVCHS 202 (216)
Q Consensus 144 -----~~~~-~~~--P-cT------a~av~~lL~~~~i~l~Gk~vvViGr-S~~VG~Pla~lL~~~~---ATVtichs 202 (216)
|..+ .|+ | .. -.|..+-++.++++.. ..-++-|. |.-=|.-.+.-|+... .|..+|-+
T Consensus 169 ~L~~~G~~~i~~i~~~~~~~~~~~R~~Gf~~al~~~~~~~~-~~~i~~~~~~~~~g~~~~~~ll~~~~~~ptAif~~n 245 (333)
T COG1609 169 HLIELGHRRIAFIGGPLDSSASRERLEGYRAALREAGLPIN-PEWIVEGDFSEESGYEAAERLLARGEPRPTAIFCAN 245 (333)
T ss_pred HHHHCCCceEEEEeCCCccccHhHHHHHHHHHHHHCCCCCC-cceEEecCCChHHHHHHHHHHHhcCCCCCcEEEEcC
Confidence 3222 333 2 11 1456667777777664 33333333 4555666656565433 67777743
No 151
>PRK06436 glycerate dehydrogenase; Provisional
Probab=85.02 E-value=1.9 Score=38.86 Aligned_cols=36 Identities=19% Similarity=0.120 Sum_probs=32.5
Q ss_pred CCCCCCeEEEecCCCcccHHHHHHhhhCCCEEEEecC
Q psy7981 166 VTIAGTNAVVLGRSKIVGTPAAELLKWKHATVTVCHS 202 (216)
Q Consensus 166 i~l~Gk~vvViGrS~~VG~Pla~lL~~~~ATVtichs 202 (216)
.+|.||+|.|||-+.+ |++++.+|..-|++|..+..
T Consensus 118 ~~L~gktvgIiG~G~I-G~~vA~~l~afG~~V~~~~r 153 (303)
T PRK06436 118 KLLYNKSLGILGYGGI-GRRVALLAKAFGMNIYAYTR 153 (303)
T ss_pred CCCCCCEEEEECcCHH-HHHHHHHHHHCCCEEEEECC
Confidence 5799999999999876 99999999888999998875
No 152
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=84.97 E-value=1.7 Score=40.71 Aligned_cols=49 Identities=39% Similarity=0.386 Sum_probs=39.5
Q ss_pred CHHHHHHHH-HHhCCCCCCCeEEEecCCCcccHHHHHHhhhCCCEEEEecC
Q psy7981 153 TPNGVLELI-KRTNVTIAGTNAVVLGRSKIVGTPAAELLKWKHATVTVCHS 202 (216)
Q Consensus 153 Ta~av~~lL-~~~~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~ATVtichs 202 (216)
|-++.+.=+ ..+++-+.||+|||.|-+. |||-.|+.|..-||.|.+.-.
T Consensus 191 tgqS~~DgI~RaTn~liaGK~vVV~GYG~-vGrG~A~~~rg~GA~ViVtEv 240 (420)
T COG0499 191 TGQSLLDGILRATNVLLAGKNVVVAGYGW-VGRGIAMRLRGMGARVIVTEV 240 (420)
T ss_pred cchhHHHHHHhhhceeecCceEEEecccc-cchHHHHHhhcCCCeEEEEec
Confidence 445555444 4478899999999999987 599999999999999998643
No 153
>PRK06484 short chain dehydrogenase; Validated
Probab=84.20 E-value=1.2 Score=42.04 Aligned_cols=42 Identities=7% Similarity=0.133 Sum_probs=36.4
Q ss_pred CCCCCeEEEecCCCcccHHHHHHhhhCCCEEEEecCCCCChH
Q psy7981 167 TIAGTNAVVLGRSKIVGTPAAELLKWKHATVTVCHSKTKNIQ 208 (216)
Q Consensus 167 ~l~Gk~vvViGrS~~VG~Pla~lL~~~~ATVtichs~T~~l~ 208 (216)
.+.||.++|.|-|.-+|+-++..|.++|++|.++.+....++
T Consensus 266 ~~~~k~~lItGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~ 307 (520)
T PRK06484 266 AESPRVVAITGGARGIGRAVADRFAAAGDRLLIIDRDAEGAK 307 (520)
T ss_pred ccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 458999999999999999999999999999999876544443
No 154
>PRK12862 malic enzyme; Reviewed
Probab=84.18 E-value=5.6 Score=40.53 Aligned_cols=127 Identities=18% Similarity=0.203 Sum_probs=92.6
Q ss_pred HHHHHHHH-HcCcceEEEeCCCCCCHHHHHHHHHHhcCCCCccEEEEeCCCCCCCCCCHHHHhhhcCCCCCcccCCccch
Q psy7981 60 RMKMKAAK-EIGIDAQHVKLPRSITEIELLSRLKKLNEDPSVHGIIVQMPLDSDNDINAMLVTDSVSPEKDVDGLNTINE 138 (216)
Q Consensus 60 ~~k~k~a~-~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvqlPL~~P~~id~~~i~~~I~p~KDVDG~~~~n~ 138 (216)
..|.-... -.||++..+.+... +.+|+++.++.+- |+.-||=+. =+ +.-+-.+|++.....-|+..||.
T Consensus 98 egK~~l~~~~~gi~~~~i~~~~~-d~d~~v~~v~~~~--p~f~~i~~E-D~---~~~~~f~i~~~~~~~~~ip~f~D--- 167 (763)
T PRK12862 98 EGKAVLFKKFAGIDVFDIELDES-DPDKLVEIVAALE--PTFGGINLE-DI---KAPECFYIERELRERMKIPVFHD--- 167 (763)
T ss_pred HHHHHHHHhhcCCCccccccCCC-CHHHHHHHHHHhC--CCcceeeee-cc---cCchHHHHHHHHHhcCCCceEec---
Confidence 34444333 45688777777754 7799999999996 555553332 11 22334566677666667887774
Q ss_pred hHhhcCCCCCcccCCHHHHHHHHHHhCCCCCCCeEEEecCCCcccHHHHHHhhhCCC---EEEEecCC
Q psy7981 139 GRVAIGDMNGFIPCTPNGVLELIKRTNVTIAGTNAVVLGRSKIVGTPAAELLKWKHA---TVTVCHSK 203 (216)
Q Consensus 139 G~l~~~~~~~~~PcTa~av~~lL~~~~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~A---TVtichs~ 203 (216)
+.++-.-+|..|++.-++-.|.+++.-++|+.|.+.- |--++.||...|. .+++|.|+
T Consensus 168 ------D~~GTa~v~la~l~~a~~~~~~~~~~~~iv~~GaGaa-g~~~a~~l~~~G~~~~~i~~~D~~ 228 (763)
T PRK12862 168 ------DQHGTAIIVAAALLNGLKLVGKDIEDVKLVASGAGAA-ALACLDLLVSLGVKRENIWVTDIK 228 (763)
T ss_pred ------CcccHHHHHHHHHHHHHHHhCCChhhcEEEEEChhHH-HHHHHHHHHHcCCCcccEEEEcCC
Confidence 3235556788999999999999999999999999876 8999999999988 58899876
No 155
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=84.13 E-value=1.9 Score=40.44 Aligned_cols=49 Identities=20% Similarity=0.375 Sum_probs=37.6
Q ss_pred HHHHHHHHHHhCCCCCCCeEEEecCCCcccHHHHHHhhhCC-CEEEEecCC
Q psy7981 154 PNGVLELIKRTNVTIAGTNAVVLGRSKIVGTPAAELLKWKH-ATVTVCHSK 203 (216)
Q Consensus 154 a~av~~lL~~~~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~-ATVtichs~ 203 (216)
+.+.+.+.+..--++.|++|+|||-+.+ |..++..|...| +.|+++...
T Consensus 164 ~~~Av~la~~~~~~l~~~~VlViGaG~i-G~~~a~~L~~~G~~~V~v~~rs 213 (417)
T TIGR01035 164 SSAAVELAERIFGSLKGKKALLIGAGEM-GELVAKHLLRKGVGKILIANRT 213 (417)
T ss_pred HHHHHHHHHHHhCCccCCEEEEECChHH-HHHHHHHHHHCCCCEEEEEeCC
Confidence 4455556655544689999999998655 999999999999 678888653
No 156
>PRK07574 formate dehydrogenase; Provisional
Probab=83.91 E-value=2.1 Score=40.07 Aligned_cols=37 Identities=16% Similarity=0.235 Sum_probs=33.2
Q ss_pred CCCCCCeEEEecCCCcccHHHHHHhhhCCCEEEEecCC
Q psy7981 166 VTIAGTNAVVLGRSKIVGTPAAELLKWKHATVTVCHSK 203 (216)
Q Consensus 166 i~l~Gk~vvViGrS~~VG~Pla~lL~~~~ATVtichs~ 203 (216)
.++.||+|.|||-+.+ |+.++.+|..-|++|..+...
T Consensus 188 ~~L~gktVGIvG~G~I-G~~vA~~l~~fG~~V~~~dr~ 224 (385)
T PRK07574 188 YDLEGMTVGIVGAGRI-GLAVLRRLKPFDVKLHYTDRH 224 (385)
T ss_pred eecCCCEEEEECCCHH-HHHHHHHHHhCCCEEEEECCC
Confidence 4689999999999885 999999999999999988754
No 157
>PRK08605 D-lactate dehydrogenase; Validated
Probab=83.88 E-value=2 Score=39.11 Aligned_cols=37 Identities=22% Similarity=0.346 Sum_probs=30.9
Q ss_pred CCCCCCCeEEEecCCCcccHHHHHHh-hhCCCEEEEecC
Q psy7981 165 NVTIAGTNAVVLGRSKIVGTPAAELL-KWKHATVTVCHS 202 (216)
Q Consensus 165 ~i~l~Gk~vvViGrS~~VG~Pla~lL-~~~~ATVtichs 202 (216)
+.+|.|++|.|||-+.+ |+.++.+| ...|++|..+..
T Consensus 141 ~~~l~g~~VgIIG~G~I-G~~vA~~L~~~~g~~V~~~d~ 178 (332)
T PRK08605 141 SRSIKDLKVAVIGTGRI-GLAVAKIFAKGYGSDVVAYDP 178 (332)
T ss_pred cceeCCCEEEEECCCHH-HHHHHHHHHhcCCCEEEEECC
Confidence 45789999999999875 99999999 556889987753
No 158
>PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed
Probab=83.14 E-value=6.6 Score=39.99 Aligned_cols=128 Identities=18% Similarity=0.274 Sum_probs=93.5
Q ss_pred HHHHHHHHHH-cCcceEEEeCCCCCCHHHHHHHHHHhcCCCCccEEEEeCCCCCCCCCCHHHHhhhcCCCCCcccCCccc
Q psy7981 59 IRMKMKAAKE-IGIDAQHVKLPRSITEIELLSRLKKLNEDPSVHGIIVQMPLDSDNDINAMLVTDSVSPEKDVDGLNTIN 137 (216)
Q Consensus 59 v~~k~k~a~~-~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvqlPL~~P~~id~~~i~~~I~p~KDVDG~~~~n 137 (216)
...|.-..+. .||++..+.+... +.+|+++.++.+- |+.-||=+. =+ +.-+-.+|++....+-|+.-||.-.
T Consensus 89 ~egK~~l~~~~~gid~~~i~~~~~-d~de~v~~v~~~~--p~~g~i~~E-D~---~~p~~f~i~~~~~~~~~ip~f~DD~ 161 (752)
T PRK07232 89 MEGKGVLFKKFAGIDVFDIEVDEE-DPDKFIEAVAALE--PTFGGINLE-DI---KAPECFYIEEKLRERMDIPVFHDDQ 161 (752)
T ss_pred HHHHHHHHHhhcCCCccccccCCC-CHHHHHHHHHHhC--CCccEEeee-ec---CCchHHHHHHHHHHhcCCCeecccc
Confidence 3445544444 4588877777654 6899999999885 666665443 11 2233456666666666788777422
Q ss_pred hhHhhcCCCCCcccCCHHHHHHHHHHhCCCCCCCeEEEecCCCcccHHHHHHhhhCCC---EEEEecCC
Q psy7981 138 EGRVAIGDMNGFIPCTPNGVLELIKRTNVTIAGTNAVVLGRSKIVGTPAAELLKWKHA---TVTVCHSK 203 (216)
Q Consensus 138 ~G~l~~~~~~~~~PcTa~av~~lL~~~~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~A---TVtichs~ 203 (216)
++-.-.|..|++.-|+-.|-+++.-++|+.|.+.- |--++.||...|. .+++|.|+
T Consensus 162 ---------~GTa~v~lA~l~na~~~~~~~~~~~~iv~~GaGaa-g~~~a~~l~~~G~~~~~i~~~D~~ 220 (752)
T PRK07232 162 ---------HGTAIISAAALLNALELVGKKIEDVKIVVSGAGAA-AIACLNLLVALGAKKENIIVCDSK 220 (752)
T ss_pred ---------chHHHHHHHHHHHHHHHhCCChhhcEEEEECccHH-HHHHHHHHHHcCCCcccEEEEcCC
Confidence 35556688899999999999999999999999876 8889999999988 58899887
No 159
>PLN02686 cinnamoyl-CoA reductase
Probab=82.52 E-value=1.6 Score=39.77 Aligned_cols=36 Identities=14% Similarity=0.166 Sum_probs=32.9
Q ss_pred CCCCCCCeEEEecCCCcccHHHHHHhhhCCCEEEEe
Q psy7981 165 NVTIAGTNAVVLGRSKIVGTPAAELLKWKHATVTVC 200 (216)
Q Consensus 165 ~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~ATVtic 200 (216)
..+.+||+|+|.|.+..+|..++..|+++|++|+++
T Consensus 48 ~~~~~~k~VLVTGatGfIG~~lv~~L~~~G~~V~~~ 83 (367)
T PLN02686 48 GADAEARLVCVTGGVSFLGLAIVDRLLRHGYSVRIA 83 (367)
T ss_pred ccCCCCCEEEEECCchHHHHHHHHHHHHCCCEEEEE
Confidence 356789999999999999999999999999999875
No 160
>PLN02572 UDP-sulfoquinovose synthase
Probab=82.35 E-value=1.6 Score=41.03 Aligned_cols=35 Identities=17% Similarity=0.193 Sum_probs=32.9
Q ss_pred CCCCCeEEEecCCCcccHHHHHHhhhCCCEEEEec
Q psy7981 167 TIAGTNAVVLGRSKIVGTPAAELLKWKHATVTVCH 201 (216)
Q Consensus 167 ~l~Gk~vvViGrS~~VG~Pla~lL~~~~ATVtich 201 (216)
.++||+|+|.|.+..+|+-++..|+++|+.|+++.
T Consensus 44 ~~~~k~VLVTGatGfIGs~Lv~~L~~~G~~V~~~d 78 (442)
T PLN02572 44 SSKKKKVMVIGGDGYCGWATALHLSKRGYEVAIVD 78 (442)
T ss_pred cccCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEe
Confidence 57899999999999999999999999999999875
No 161
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=82.28 E-value=2.9 Score=39.47 Aligned_cols=50 Identities=14% Similarity=0.211 Sum_probs=42.2
Q ss_pred CHHHHHHHHHHhCCCCCCCeEEEecCCCcccHHHHHHhhhCCC-EEEEecCC
Q psy7981 153 TPNGVLELIKRTNVTIAGTNAVVLGRSKIVGTPAAELLKWKHA-TVTVCHSK 203 (216)
Q Consensus 153 Ta~av~~lL~~~~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~A-TVtichs~ 203 (216)
.+.+.+++.+..--++.||+|+|||-+.. |+-++..|..+|+ .+++|.+.
T Consensus 164 v~~~Av~la~~~~~~l~~kkvlviGaG~~-a~~va~~L~~~g~~~I~V~nRt 214 (414)
T PRK13940 164 VAFSAITLAKRQLDNISSKNVLIIGAGQT-GELLFRHVTALAPKQIMLANRT 214 (414)
T ss_pred HHHHHHHHHHHHhcCccCCEEEEEcCcHH-HHHHHHHHHHcCCCEEEEECCC
Confidence 55677888888767899999999999887 9999999999996 58888763
No 162
>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase.
Probab=82.00 E-value=1.6 Score=43.56 Aligned_cols=38 Identities=26% Similarity=0.226 Sum_probs=34.4
Q ss_pred CCCCCeEEEecCCCcccHHHHHHhhhCCCEEEEecCCC
Q psy7981 167 TIAGTNAVVLGRSKIVGTPAAELLKWKHATVTVCHSKT 204 (216)
Q Consensus 167 ~l~Gk~vvViGrS~~VG~Pla~lL~~~~ATVtichs~T 204 (216)
++.||.|+|.|-+.-+|+-++..|.++|++|.+.....
T Consensus 411 ~l~gkvvLVTGasggIG~aiA~~La~~Ga~Vvi~~r~~ 448 (676)
T TIGR02632 411 TLARRVAFVTGGAGGIGRETARRLAAEGAHVVLADLNL 448 (676)
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 47899999999999999999999999999999886543
No 163
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=81.98 E-value=2.7 Score=40.72 Aligned_cols=38 Identities=21% Similarity=0.193 Sum_probs=34.1
Q ss_pred CCCCCCCeEEEecCCCcccHHHHHHhhhCCCEEEEecCC
Q psy7981 165 NVTIAGTNAVVLGRSKIVGTPAAELLKWKHATVTVCHSK 203 (216)
Q Consensus 165 ~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~ATVtichs~ 203 (216)
+.+|.||++.|||-+.+ |+.+|..|...|+.|..+..+
T Consensus 133 g~~l~gktvgIiG~G~I-G~~vA~~l~~fG~~V~~~d~~ 170 (525)
T TIGR01327 133 GTELYGKTLGVIGLGRI-GSIVAKRAKAFGMKVLAYDPY 170 (525)
T ss_pred ccccCCCEEEEECCCHH-HHHHHHHHHhCCCEEEEECCC
Confidence 56799999999999885 999999999999999998753
No 164
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=81.51 E-value=3.3 Score=37.49 Aligned_cols=36 Identities=14% Similarity=0.093 Sum_probs=32.2
Q ss_pred CCCCCCeEEEecCCCcccHHHHHHhhhCCCEEEEecC
Q psy7981 166 VTIAGTNAVVLGRSKIVGTPAAELLKWKHATVTVCHS 202 (216)
Q Consensus 166 i~l~Gk~vvViGrS~~VG~Pla~lL~~~~ATVtichs 202 (216)
.++.||+|.|||-+.+ |++++.+|..-|+.|+....
T Consensus 132 ~~l~g~tvgIvG~G~I-G~~vA~~l~afG~~V~~~~~ 167 (312)
T PRK15469 132 YHREDFTIGILGAGVL-GSKVAQSLQTWGFPLRCWSR 167 (312)
T ss_pred CCcCCCEEEEECCCHH-HHHHHHHHHHCCCEEEEEeC
Confidence 4689999999999987 99999999999999987653
No 165
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=81.34 E-value=3.1 Score=39.07 Aligned_cols=38 Identities=18% Similarity=0.220 Sum_probs=34.0
Q ss_pred CCCCCCCeEEEecCCCcccHHHHHHhhhCCCEEEEecCC
Q psy7981 165 NVTIAGTNAVVLGRSKIVGTPAAELLKWKHATVTVCHSK 203 (216)
Q Consensus 165 ~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~ATVtichs~ 203 (216)
+.+|.||++.|||-+.+ |+.+|.+|..-|+.|..+...
T Consensus 146 ~~~L~gktvGIiG~G~I-G~~vA~~~~~fGm~V~~~d~~ 183 (409)
T PRK11790 146 SFEVRGKTLGIVGYGHI-GTQLSVLAESLGMRVYFYDIE 183 (409)
T ss_pred cccCCCCEEEEECCCHH-HHHHHHHHHHCCCEEEEECCC
Confidence 36799999999999887 999999999999999988753
No 166
>PRK08324 short chain dehydrogenase; Validated
Probab=80.61 E-value=1.8 Score=42.89 Aligned_cols=41 Identities=24% Similarity=0.293 Sum_probs=35.5
Q ss_pred CCCCCeEEEecCCCcccHHHHHHhhhCCCEEEEecCCCCCh
Q psy7981 167 TIAGTNAVVLGRSKIVGTPAAELLKWKHATVTVCHSKTKNI 207 (216)
Q Consensus 167 ~l~Gk~vvViGrS~~VG~Pla~lL~~~~ATVtichs~T~~l 207 (216)
++.||.|+|.|-+.-+|+-++..|.++|++|.++......+
T Consensus 419 ~l~gk~vLVTGasggIG~~la~~L~~~Ga~Vvl~~r~~~~~ 459 (681)
T PRK08324 419 PLAGKVALVTGAAGGIGKATAKRLAAEGACVVLADLDEEAA 459 (681)
T ss_pred CCCCCEEEEecCCCHHHHHHHHHHHHCcCEEEEEeCCHHHH
Confidence 46899999999999999999999999999999887654333
No 167
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=80.48 E-value=2.2 Score=40.55 Aligned_cols=36 Identities=19% Similarity=0.173 Sum_probs=31.8
Q ss_pred CCCCCeEEEecCCCcccHHHHHHhhhCCCEEEEecCC
Q psy7981 167 TIAGTNAVVLGRSKIVGTPAAELLKWKHATVTVCHSK 203 (216)
Q Consensus 167 ~l~Gk~vvViGrS~~VG~Pla~lL~~~~ATVtichs~ 203 (216)
.+.||+|.|+|-+. .|++++.+|.++|+.|+++...
T Consensus 12 ~~~~~~v~v~G~G~-sG~a~a~~L~~~G~~V~~~D~~ 47 (473)
T PRK00141 12 QELSGRVLVAGAGV-SGRGIAAMLSELGCDVVVADDN 47 (473)
T ss_pred cccCCeEEEEccCH-HHHHHHHHHHHCCCEEEEECCC
Confidence 46899999999766 5999999999999999999864
No 168
>COG0078 ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism]
Probab=80.28 E-value=3.3 Score=37.74 Aligned_cols=119 Identities=18% Similarity=0.196 Sum_probs=81.2
Q ss_pred HHHHHHcCcceEEEe-----CCCCCCHHHHHHHHHHhcCCCCccEEEEeCCCCCCCCCCHHHHhhhcCCCCCcccCCccc
Q psy7981 63 MKAAKEIGIDAQHVK-----LPRSITEIELLSRLKKLNEDPSVHGIIVQMPLDSDNDINAMLVTDSVSPEKDVDGLNTIN 137 (216)
Q Consensus 63 ~k~a~~~Gi~~~~~~-----l~~~~~~~el~~~I~~lN~D~~V~GIlvqlPL~~P~~id~~~i~~~I~p~KDVDG~~~~n 137 (216)
.-++..+|-...... +....+-+|-...+.++ +|||++--. +|-+.+.+.+. -.|+ .+|
T Consensus 63 eva~~qlGg~~~~l~~~~~Qlgr~Esi~DTArVLsr~-----~D~I~~R~~----~~~~ve~lA~~----s~VP---ViN 126 (310)
T COG0078 63 EVAATQLGGHAIYLGPGDSQLGRGESIKDTARVLSRM-----VDAIMIRGF----SHETLEELAKY----SGVP---VIN 126 (310)
T ss_pred HHHHHHcCCCeEEeCCCccccCCCCcHHHHHHHHHhh-----hheEEEecc----cHHHHHHHHHh----CCCc---eEc
Confidence 567778888875543 33334556667777776 999998643 45544444322 1222 233
Q ss_pred hhHhhcCCCCCcccCCHHH-HHHHHHHhCCCCCCCeEEEecCCCcccHHHHHHhhhCCCEEEEecCCC
Q psy7981 138 EGRVAIGDMNGFIPCTPNG-VLELIKRTNVTIAGTNAVVLGRSKIVGTPAAELLKWKHATVTVCHSKT 204 (216)
Q Consensus 138 ~G~l~~~~~~~~~PcTa~a-v~~lL~~~~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~ATVtichs~T 204 (216)
|-...+.||=..| .+.+-|+.|- ++|++++-||-++.|+..+...-..-|..|+++.=+-
T Consensus 127 ------gLtD~~HP~Q~LADl~Ti~E~~g~-l~g~k~a~vGDgNNv~nSl~~~~a~~G~dv~ia~Pk~ 187 (310)
T COG0078 127 ------GLTDEFHPCQALADLMTIKEHFGS-LKGLKLAYVGDGNNVANSLLLAAAKLGMDVRIATPKG 187 (310)
T ss_pred ------ccccccCcHHHHHHHHHHHHhcCc-ccCcEEEEEcCcchHHHHHHHHHHHhCCeEEEECCCc
Confidence 2112689999999 5555566665 9999999999999999988877777899999986544
No 169
>PRK14982 acyl-ACP reductase; Provisional
Probab=80.23 E-value=3.5 Score=38.06 Aligned_cols=53 Identities=15% Similarity=0.253 Sum_probs=41.3
Q ss_pred HHHHHHHHHhCCCCCCCeEEEecCCCcccHHHHHHhhhC-C-CEEEEecCCCCCh
Q psy7981 155 NGVLELIKRTNVTIAGTNAVVLGRSKIVGTPAAELLKWK-H-ATVTVCHSKTKNI 207 (216)
Q Consensus 155 ~av~~lL~~~~i~l~Gk~vvViGrS~~VG~Pla~lL~~~-~-ATVtichs~T~~l 207 (216)
+++-.-.+..+.+++||+|+|+|.+..+|.=++..|.++ + ..++++.+.-..+
T Consensus 140 ~~V~la~~~lg~~l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl 194 (340)
T PRK14982 140 RQVEQNAPRLGIDLSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERL 194 (340)
T ss_pred HHHHHhHHHhccCcCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHH
Confidence 355555566788999999999999999999999999864 4 5888887643333
No 170
>PLN02427 UDP-apiose/xylose synthase
Probab=80.16 E-value=2.7 Score=38.22 Aligned_cols=41 Identities=15% Similarity=0.147 Sum_probs=34.5
Q ss_pred hCCCCCCCeEEEecCCCcccHHHHHHhhhC-CCEEEEecCCC
Q psy7981 164 TNVTIAGTNAVVLGRSKIVGTPAAELLKWK-HATVTVCHSKT 204 (216)
Q Consensus 164 ~~i~l~Gk~vvViGrS~~VG~Pla~lL~~~-~ATVtichs~T 204 (216)
-|-+++.++|+|.|.+..+|..++..|+++ +..|+.....+
T Consensus 8 ~~~~~~~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r~~ 49 (386)
T PLN02427 8 DGKPIKPLTICMIGAGGFIGSHLCEKLMTETPHKVLALDVYN 49 (386)
T ss_pred CCCcccCcEEEEECCcchHHHHHHHHHHhcCCCEEEEEecCc
Confidence 355677889999999999999999999998 58888776443
No 171
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=79.99 E-value=2.2 Score=40.15 Aligned_cols=37 Identities=24% Similarity=0.265 Sum_probs=33.0
Q ss_pred CCCCeEEEecCCCcccHHHHHHhhhCCCEEEEecCCCC
Q psy7981 168 IAGTNAVVLGRSKIVGTPAAELLKWKHATVTVCHSKTK 205 (216)
Q Consensus 168 l~Gk~vvViGrS~~VG~Pla~lL~~~~ATVtichs~T~ 205 (216)
..||+|+|||-++ +|.-+|..|.+.|+.||+++..+.
T Consensus 270 ~~gk~VvVIGgG~-~a~d~A~~l~~~G~~Vtlv~~~~~ 306 (449)
T TIGR01316 270 YAGKSVVVIGGGN-TAVDSARTALRLGAEVHCLYRRTR 306 (449)
T ss_pred cCCCeEEEECCCH-HHHHHHHHHHHcCCEEEEEeecCc
Confidence 4799999999885 699999999999999999998763
No 172
>KOG1201|consensus
Probab=79.95 E-value=3.1 Score=37.78 Aligned_cols=48 Identities=15% Similarity=0.183 Sum_probs=40.3
Q ss_pred CCCCCCCeEEEecCCCcccHHHHHHhhhCCCEEEEecCCCCChHHHHh
Q psy7981 165 NVTIAGTNAVVLGRSKIVGTPAAELLKWKHATVTVCHSKTKNIQDVVK 212 (216)
Q Consensus 165 ~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~ATVtichs~T~~l~~~~k 212 (216)
..+++|+.|+|=|-|.-+||-+|.-+.+++|++.+-....+..++.++
T Consensus 33 ~k~v~g~~vLITGgg~GlGr~ialefa~rg~~~vl~Din~~~~~etv~ 80 (300)
T KOG1201|consen 33 LKSVSGEIVLITGGGSGLGRLIALEFAKRGAKLVLWDINKQGNEETVK 80 (300)
T ss_pred hhhccCCEEEEeCCCchHHHHHHHHHHHhCCeEEEEeccccchHHHHH
Confidence 357899999999999999999999999999988887776665554443
No 173
>PRK04148 hypothetical protein; Provisional
Probab=79.84 E-value=5.4 Score=32.05 Aligned_cols=44 Identities=23% Similarity=0.087 Sum_probs=34.7
Q ss_pred HHHHHhCCCCCCCeEEEecCCCcccHHHHHHhhhCCCEEEEecCCC
Q psy7981 159 ELIKRTNVTIAGTNAVVLGRSKIVGTPAAELLKWKHATVTVCHSKT 204 (216)
Q Consensus 159 ~lL~~~~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~ATVtichs~T 204 (216)
+.|..+-...+|+++++||-+ .|.-+|..|.+.|..|+.....-
T Consensus 6 ~~l~~~~~~~~~~kileIG~G--fG~~vA~~L~~~G~~ViaIDi~~ 49 (134)
T PRK04148 6 EFIAENYEKGKNKKIVELGIG--FYFKVAKKLKESGFDVIVIDINE 49 (134)
T ss_pred HHHHHhcccccCCEEEEEEec--CCHHHHHHHHHCCCEEEEEECCH
Confidence 344443344578999999999 79889999999999999987643
No 174
>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....
Probab=79.82 E-value=3.3 Score=36.22 Aligned_cols=51 Identities=25% Similarity=0.207 Sum_probs=41.7
Q ss_pred cccCCHHHHHHHHH----HhCCC-CCCCeEEEecCCCcccHHHHHHhhhCCCEEEEe
Q psy7981 149 FIPCTPNGVLELIK----RTNVT-IAGTNAVVLGRSKIVGTPAAELLKWKHATVTVC 200 (216)
Q Consensus 149 ~~PcTa~av~~lL~----~~~i~-l~Gk~vvViGrS~~VG~Pla~lL~~~~ATVtic 200 (216)
..++|..||...++ +++.+ ++|++|+|-|- ..||.-++.+|.+.||.|..+
T Consensus 6 ~~~aTg~GV~~~~~~~~~~~~~~~l~g~~v~IqGf-G~VG~~~a~~l~~~Ga~vv~v 61 (244)
T PF00208_consen 6 RSEATGYGVAYAIEAALEHLGGDSLEGKRVAIQGF-GNVGSHAARFLAELGAKVVAV 61 (244)
T ss_dssp TTTHHHHHHHHHHHHHHHHTTCHSSTTCEEEEEES-SHHHHHHHHHHHHTTEEEEEE
T ss_pred CCcchHHHHHHHHHHHHHHcCCCCcCCCEEEEECC-CHHHHHHHHHHHHcCCEEEEE
Confidence 45789988877665 45666 99999999998 567999999999999997654
No 175
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=79.60 E-value=2.3 Score=38.84 Aligned_cols=35 Identities=14% Similarity=0.123 Sum_probs=32.0
Q ss_pred CCCeEEEecCCCcccHHHHHHhhhCCCEEEEecCC
Q psy7981 169 AGTNAVVLGRSKIVGTPAAELLKWKHATVTVCHSK 203 (216)
Q Consensus 169 ~Gk~vvViGrS~~VG~Pla~lL~~~~ATVtichs~ 203 (216)
++|+|+|.|.+..||..++..|.++|..|+...+.
T Consensus 20 ~~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~r~ 54 (370)
T PLN02695 20 EKLRICITGAGGFIASHIARRLKAEGHYIIASDWK 54 (370)
T ss_pred CCCEEEEECCccHHHHHHHHHHHhCCCEEEEEEec
Confidence 68999999999999999999999999999987643
No 176
>PLN02206 UDP-glucuronate decarboxylase
Probab=79.47 E-value=2.8 Score=39.62 Aligned_cols=38 Identities=24% Similarity=0.318 Sum_probs=33.9
Q ss_pred CCCCCCCeEEEecCCCcccHHHHHHhhhCCCEEEEecC
Q psy7981 165 NVTIAGTNAVVLGRSKIVGTPAAELLKWKHATVTVCHS 202 (216)
Q Consensus 165 ~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~ATVtichs 202 (216)
|..-++++|+|.|.+..||.-|+..|+++|..|..+..
T Consensus 114 ~~~~~~~kILVTGatGfIGs~Lv~~Ll~~G~~V~~ld~ 151 (442)
T PLN02206 114 GLKRKGLRVVVTGGAGFVGSHLVDRLMARGDSVIVVDN 151 (442)
T ss_pred ccccCCCEEEEECcccHHHHHHHHHHHHCcCEEEEEeC
Confidence 44557899999999999999999999999999998854
No 177
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=79.21 E-value=10 Score=31.84 Aligned_cols=64 Identities=16% Similarity=0.183 Sum_probs=41.8
Q ss_pred EEEEEeC-CCcchHHHHHHHHHHHHHcCcceEEEeCCCCCCHHHHHHHHHHhcCCCCccEEEEeCCC
Q psy7981 44 LAIVQVG-GREDSNVYIRMKMKAAKEIGIDAQHVKLPRSITEIELLSRLKKLNEDPSVHGIIVQMPL 109 (216)
Q Consensus 44 LaiI~vg-~~~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvqlPL 109 (216)
+++|.-. +++-....++...++|++.|++......+..-+.+.-.+.++++-.. +|+||++. |.
T Consensus 2 igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~~-~vdgiIi~-~~ 66 (275)
T cd06320 2 YGVVLKTLSNEFWRSLKEGYENEAKKLGVSVDIQAAPSEGDQQGQLSIAENMINK-GYKGLLFS-PI 66 (275)
T ss_pred eeEEEecCCCHHHHHHHHHHHHHHHHhCCeEEEEccCCCCCHHHHHHHHHHHHHh-CCCEEEEC-CC
Confidence 3444432 34445555677889999999998887665444455555666666444 69999884 54
No 178
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=78.92 E-value=3.7 Score=39.76 Aligned_cols=37 Identities=22% Similarity=0.270 Sum_probs=33.3
Q ss_pred CCCCCCCeEEEecCCCcccHHHHHHhhhCCCEEEEecC
Q psy7981 165 NVTIAGTNAVVLGRSKIVGTPAAELLKWKHATVTVCHS 202 (216)
Q Consensus 165 ~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~ATVtichs 202 (216)
+.+|.||++.|||-+.+ |+.+|..|...|++|..+..
T Consensus 135 g~~l~gktvgIiG~G~I-G~~vA~~l~~fG~~V~~~d~ 171 (526)
T PRK13581 135 GVELYGKTLGIIGLGRI-GSEVAKRAKAFGMKVIAYDP 171 (526)
T ss_pred ccccCCCEEEEECCCHH-HHHHHHHHHhCCCEEEEECC
Confidence 45789999999999885 99999999999999998875
No 179
>PRK05928 hemD uroporphyrinogen-III synthase; Reviewed
Probab=78.76 E-value=13 Score=30.95 Aligned_cols=129 Identities=16% Similarity=0.159 Sum_probs=76.7
Q ss_pred HHHHHHHcCcceEEEeCCCCCC---HHHHHHHHHHhcCCCCccEEEEeCCCCCCCCCCHHHHhhhcCCCCCcccC---Cc
Q psy7981 62 KMKAAKEIGIDAQHVKLPRSIT---EIELLSRLKKLNEDPSVHGIIVQMPLDSDNDINAMLVTDSVSPEKDVDGL---NT 135 (216)
Q Consensus 62 k~k~a~~~Gi~~~~~~l~~~~~---~~el~~~I~~lN~D~~V~GIlvqlPL~~P~~id~~~i~~~I~p~KDVDG~---~~ 135 (216)
-.+.+++.|+++....+-+... .+. -..+......++|+...|- .++ .+++.+. +.+...+ +-
T Consensus 16 l~~~l~~~G~~v~~~p~~~~~~~~~~~~----~~~~~~~~~~d~iiftS~~----av~--~~~~~~~-~~~~~~~~~~~~ 84 (249)
T PRK05928 16 LVELLRELGFVALHFPLIEIEPGRQLPQ----LAAQLAALGADWVIFTSKN----AVE--FLLSALK-KKKLKWPKNKKY 84 (249)
T ss_pred HHHHHHHcCCCEEEeccEEEecCCCcCh----HHHHhhCCCCCEEEEECHH----HHH--HHHHHHH-hcCcCCCCCCEE
Confidence 3577888898887654432211 111 3445556678999987663 343 4455544 3333322 22
Q ss_pred cchhHhh------cCCCCCccc--CCHHHHHHHHHHhCCCCCCCeEEEecCCCcccHHHHHHhhhCCCEEEEecCCC
Q psy7981 136 INEGRVA------IGDMNGFIP--CTPNGVLELIKRTNVTIAGTNAVVLGRSKIVGTPAAELLKWKHATVTVCHSKT 204 (216)
Q Consensus 136 ~n~G~l~------~~~~~~~~P--cTa~av~~lL~~~~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~ATVtichs~T 204 (216)
+-.|.-- .|-...++| -|+.+.++.|..+. +.|+++++. |+.--..-+...|.+.|++|..+..+.
T Consensus 85 ~avG~~Ta~~l~~~G~~~~~~~~~~~~~~l~~~l~~~~--~~~~~ili~-~~~~~~~~l~~~L~~~G~~v~~~~~Y~ 158 (249)
T PRK05928 85 AAIGEKTALALKKLGGKVVFVPEDGESSELLLELPELL--LKGKRVLYL-RGNGGREVLGDTLEERGAEVDECEVYE 158 (249)
T ss_pred EEECHHHHHHHHHcCCCccccCCCCcChHHHHhChhhh--cCCCEEEEE-CCCCCHHHHHHHHHHCCCEEeEEEEEE
Confidence 2233111 121113555 37788888887765 689997777 566545568889999999998887664
No 180
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=78.67 E-value=2.7 Score=41.46 Aligned_cols=40 Identities=18% Similarity=0.043 Sum_probs=34.4
Q ss_pred CCCCeEEEecCCCcccHHHHHHhhhCCCEEEEecCCCCCh
Q psy7981 168 IAGTNAVVLGRSKIVGTPAAELLKWKHATVTVCHSKTKNI 207 (216)
Q Consensus 168 l~Gk~vvViGrS~~VG~Pla~lL~~~~ATVtichs~T~~l 207 (216)
..||.|+|.|.+..+|+-++..|+++|+.|+++.+.-..+
T Consensus 78 ~~gKvVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~ekl 117 (576)
T PLN03209 78 KDEDLAFVAGATGKVGSRTVRELLKLGFRVRAGVRSAQRA 117 (576)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCHHHH
Confidence 3799999999999999999999999999999886544333
No 181
>PRK05855 short chain dehydrogenase; Validated
Probab=78.56 E-value=2.4 Score=39.82 Aligned_cols=43 Identities=19% Similarity=0.181 Sum_probs=36.3
Q ss_pred CCCCCCeEEEecCCCcccHHHHHHhhhCCCEEEEecCCCCChH
Q psy7981 166 VTIAGTNAVVLGRSKIVGTPAAELLKWKHATVTVCHSKTKNIQ 208 (216)
Q Consensus 166 i~l~Gk~vvViGrS~~VG~Pla~lL~~~~ATVtichs~T~~l~ 208 (216)
..+.+++++|+|-|.-+|+-++..|.++|++|.++-+....++
T Consensus 311 ~~~~~~~~lv~G~s~giG~~~a~~l~~~G~~v~~~~r~~~~~~ 353 (582)
T PRK05855 311 GPFSGKLVVVTGAGSGIGRETALAFAREGAEVVASDIDEAAAE 353 (582)
T ss_pred ccCCCCEEEEECCcCHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 3578899999999999999999999999999999866443333
No 182
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=78.34 E-value=3.4 Score=38.73 Aligned_cols=49 Identities=24% Similarity=0.380 Sum_probs=36.9
Q ss_pred HHHHHHHHHHhCCCCCCCeEEEecCCCcccHHHHHHhhhCCC-EEEEecCC
Q psy7981 154 PNGVLELIKRTNVTIAGTNAVVLGRSKIVGTPAAELLKWKHA-TVTVCHSK 203 (216)
Q Consensus 154 a~av~~lL~~~~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~A-TVtichs~ 203 (216)
+.+.+++.+..--++.|++|+|||-+.+ |.-++..|...|+ .|+++...
T Consensus 166 ~~~Av~~a~~~~~~~~~~~vlViGaG~i-G~~~a~~L~~~G~~~V~v~~r~ 215 (423)
T PRK00045 166 ASAAVELAKQIFGDLSGKKVLVIGAGEM-GELVAKHLAEKGVRKITVANRT 215 (423)
T ss_pred HHHHHHHHHHhhCCccCCEEEEECchHH-HHHHHHHHHHCCCCeEEEEeCC
Confidence 3444555554323789999999998665 9999999999997 68888653
No 183
>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=78.17 E-value=2.8 Score=38.96 Aligned_cols=36 Identities=31% Similarity=0.404 Sum_probs=33.2
Q ss_pred CCCCCeEEEecCCCcccHHHHHHhhhCCCEEEEecC
Q psy7981 167 TIAGTNAVVLGRSKIVGTPAAELLKWKHATVTVCHS 202 (216)
Q Consensus 167 ~l~Gk~vvViGrS~~VG~Pla~lL~~~~ATVtichs 202 (216)
+++|+.++|.|-+.-+|+-++..|.++|++|.++-.
T Consensus 207 ~~~g~~vlItGasggIG~~la~~l~~~Ga~vi~~~~ 242 (450)
T PRK08261 207 PLAGKVALVTGAARGIGAAIAEVLARDGAHVVCLDV 242 (450)
T ss_pred CCCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeC
Confidence 568999999999999999999999999999998854
No 184
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=77.85 E-value=2.8 Score=39.84 Aligned_cols=37 Identities=14% Similarity=0.154 Sum_probs=33.1
Q ss_pred CCCCCeEEEecCCCcccHHHHHHhhhCCCEEEEecCCC
Q psy7981 167 TIAGTNAVVLGRSKIVGTPAAELLKWKHATVTVCHSKT 204 (216)
Q Consensus 167 ~l~Gk~vvViGrS~~VG~Pla~lL~~~~ATVtichs~T 204 (216)
+++||+|+|||.+.. |.=+|..|......||++|...
T Consensus 201 ~~~gk~VvVVG~G~S-g~diA~~L~~~a~~V~l~~r~~ 237 (461)
T PLN02172 201 PFKNEVVVVIGNFAS-GADISRDIAKVAKEVHIASRAS 237 (461)
T ss_pred ccCCCEEEEECCCcC-HHHHHHHHHHhCCeEEEEEeec
Confidence 468999999999887 9999999999999999999754
No 185
>PRK12831 putative oxidoreductase; Provisional
Probab=77.85 E-value=2.8 Score=39.78 Aligned_cols=37 Identities=22% Similarity=0.248 Sum_probs=33.0
Q ss_pred CCCCeEEEecCCCcccHHHHHHhhhCCCEEEEecCCCC
Q psy7981 168 IAGTNAVVLGRSKIVGTPAAELLKWKHATVTVCHSKTK 205 (216)
Q Consensus 168 l~Gk~vvViGrS~~VG~Pla~lL~~~~ATVtichs~T~ 205 (216)
..||+|+|||-++ +|.-+|..|.+.|+.||+++..+.
T Consensus 279 ~~gk~VvVIGgG~-va~d~A~~l~r~Ga~Vtlv~r~~~ 315 (464)
T PRK12831 279 KVGKKVAVVGGGN-VAMDAARTALRLGAEVHIVYRRSE 315 (464)
T ss_pred cCCCeEEEECCcH-HHHHHHHHHHHcCCEEEEEeecCc
Confidence 5799999999885 699999999999999999988663
No 186
>PRK06932 glycerate dehydrogenase; Provisional
Probab=77.61 E-value=4.7 Score=36.40 Aligned_cols=35 Identities=20% Similarity=0.285 Sum_probs=31.3
Q ss_pred CCCCCCeEEEecCCCcccHHHHHHhhhCCCEEEEec
Q psy7981 166 VTIAGTNAVVLGRSKIVGTPAAELLKWKHATVTVCH 201 (216)
Q Consensus 166 i~l~Gk~vvViGrS~~VG~Pla~lL~~~~ATVtich 201 (216)
.++.||+|.|||-+.+ |+-++.+|..-|+.|....
T Consensus 143 ~~l~gktvgIiG~G~I-G~~va~~l~~fg~~V~~~~ 177 (314)
T PRK06932 143 TDVRGSTLGVFGKGCL-GTEVGRLAQALGMKVLYAE 177 (314)
T ss_pred cccCCCEEEEECCCHH-HHHHHHHHhcCCCEEEEEC
Confidence 4689999999999887 9999999999999997654
No 187
>cd06300 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily. Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their substrate specificity is not known in detail.
Probab=77.46 E-value=12 Score=31.50 Aligned_cols=56 Identities=14% Similarity=0.169 Sum_probs=41.1
Q ss_pred CcchHHHHHHHHHHHHHc---CcceEEEeCCCCCCHHHHHHHHHHhcCCCCccEEEEeCC
Q psy7981 52 REDSNVYIRMKMKAAKEI---GIDAQHVKLPRSITEIELLSRLKKLNEDPSVHGIIVQMP 108 (216)
Q Consensus 52 ~~as~~Yv~~k~k~a~~~---Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvqlP 108 (216)
++--...++...+.|++. |.+++..-++.+-++++..+.++++... +|+||++.-.
T Consensus 11 ~~~~~~~~~~i~~~~~~~~~~g~~~~l~i~~~~~~~~~~~~~~~~~~~~-~vdgiIi~~~ 69 (272)
T cd06300 11 NTWRAQMLDEFKAQAKELKKAGLISEFIVTSADGDVAQQIADIRNLIAQ-GVDAIIINPA 69 (272)
T ss_pred ChHHHHHHHHHHHHHHhhhccCCeeEEEEecCCCCHHHHHHHHHHHHHc-CCCEEEEeCC
Confidence 344445567778899999 9866666666666677778888887666 8999999643
No 188
>PF04392 ABC_sub_bind: ABC transporter substrate binding protein; InterPro: IPR007487 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. This family contains many hypothetical proteins and some ABC transporter substrate binding proteins.; PDB: 3LFT_A 3LKV_A.
Probab=76.98 E-value=20 Score=31.46 Aligned_cols=59 Identities=24% Similarity=0.344 Sum_probs=43.5
Q ss_pred ceEEEEEeCCCcchHHHHHHHHHHHHHcCcceEEEeCCCCCCHHHHHHHHHHhcCCCCccEEEE
Q psy7981 42 PGLAIVQVGGREDSNVYIRMKMKAAKEIGIDAQHVKLPRSITEIELLSRLKKLNEDPSVHGIIV 105 (216)
Q Consensus 42 P~LaiI~vg~~~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlv 105 (216)
-+++++.-.+.+.|..+++.-.+.|++.|++...+.+++ .+|+...++.+.++ ++++++
T Consensus 132 k~igvl~~~~~~~~~~~~~~~~~~a~~~g~~l~~~~v~~---~~~~~~~~~~l~~~--~da~~~ 190 (294)
T PF04392_consen 132 KRIGVLYDPSEPNSVAQIEQLRKAAKKLGIELVEIPVPS---SEDLEQALEALAEK--VDALYL 190 (294)
T ss_dssp -EEEEEEETT-HHHHHHHHHHHHHHHHTT-EEEEEEESS---GGGHHHHHHHHCTT---SEEEE
T ss_pred CEEEEEecCCCccHHHHHHHHHHHHHHcCCEEEEEecCc---HhHHHHHHHHhhcc--CCEEEE
Confidence 467777665566688899999999999999998888764 46788889999765 666665
No 189
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=76.84 E-value=5.2 Score=36.34 Aligned_cols=38 Identities=11% Similarity=0.130 Sum_probs=32.6
Q ss_pred CCCCCCCeEEEecCCCcccHHHHHHhh-hCCCEEEEecCC
Q psy7981 165 NVTIAGTNAVVLGRSKIVGTPAAELLK-WKHATVTVCHSK 203 (216)
Q Consensus 165 ~i~l~Gk~vvViGrS~~VG~Pla~lL~-~~~ATVtichs~ 203 (216)
+.+|.||++.|||-+.+ |+-++..|. .-|+.|.....+
T Consensus 140 g~~L~gktvGIiG~G~I-G~~va~~l~~~fgm~V~~~~~~ 178 (323)
T PRK15409 140 GTDVHHKTLGIVGMGRI-GMALAQRAHFGFNMPILYNARR 178 (323)
T ss_pred cCCCCCCEEEEEcccHH-HHHHHHHHHhcCCCEEEEECCC
Confidence 56799999999999887 999999997 789999876544
No 190
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=76.34 E-value=4.5 Score=36.92 Aligned_cols=41 Identities=22% Similarity=0.260 Sum_probs=36.9
Q ss_pred hCCCCCCCeEEEecCCCcccHHHHHHhhhCCCEEEEecCCCC
Q psy7981 164 TNVTIAGTNAVVLGRSKIVGTPAAELLKWKHATVTVCHSKTK 205 (216)
Q Consensus 164 ~~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~ATVtichs~T~ 205 (216)
.+.+|.||.+-|||-+.+ |+-++..|..-|+.|..+..+++
T Consensus 136 ~g~el~gkTvGIiG~G~I-G~~va~~l~afgm~v~~~d~~~~ 176 (324)
T COG0111 136 RGTELAGKTVGIIGLGRI-GRAVAKRLKAFGMKVIGYDPYSP 176 (324)
T ss_pred ccccccCCEEEEECCCHH-HHHHHHHHHhCCCeEEEECCCCc
Confidence 367899999999999987 99999999999999999988553
No 191
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=76.10 E-value=3.7 Score=37.91 Aligned_cols=41 Identities=12% Similarity=0.142 Sum_probs=35.9
Q ss_pred hCCCCCCCeEEEecCCCcccHHHHHHhhhCCCEEEEecCCC
Q psy7981 164 TNVTIAGTNAVVLGRSKIVGTPAAELLKWKHATVTVCHSKT 204 (216)
Q Consensus 164 ~~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~ATVtichs~T 204 (216)
-+.+.+|++|+|+|.+..+|+.++..|+++|+.|+.+.+..
T Consensus 54 ~~~~~~~~kVLVtGatG~IG~~l~~~Ll~~G~~V~~l~R~~ 94 (390)
T PLN02657 54 RSKEPKDVTVLVVGATGYIGKFVVRELVRRGYNVVAVAREK 94 (390)
T ss_pred cccCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEEech
Confidence 35667899999999999999999999999999998886543
No 192
>PLN00016 RNA-binding protein; Provisional
Probab=75.32 E-value=4.4 Score=36.85 Aligned_cols=38 Identities=16% Similarity=0.198 Sum_probs=33.7
Q ss_pred CCCCeEEEe----cCCCcccHHHHHHhhhCCCEEEEecCCCC
Q psy7981 168 IAGTNAVVL----GRSKIVGTPAAELLKWKHATVTVCHSKTK 205 (216)
Q Consensus 168 l~Gk~vvVi----GrS~~VG~Pla~lL~~~~ATVtichs~T~ 205 (216)
...++|+|+ |-+..+|..++..|+++|.+|+++.+...
T Consensus 50 ~~~~~VLVt~~~~GatG~iG~~lv~~L~~~G~~V~~l~R~~~ 91 (378)
T PLN00016 50 VEKKKVLIVNTNSGGHAFIGFYLAKELVKAGHEVTLFTRGKE 91 (378)
T ss_pred cccceEEEEeccCCCceeEhHHHHHHHHHCCCEEEEEecCCc
Confidence 455789999 99999999999999999999999987643
No 193
>KOG1208|consensus
Probab=75.26 E-value=4.9 Score=36.52 Aligned_cols=41 Identities=22% Similarity=0.325 Sum_probs=37.3
Q ss_pred hCCCCCCCeEEEecCCCcccHHHHHHhhhCCCEEEEecCCC
Q psy7981 164 TNVTIAGTNAVVLGRSKIVGTPAAELLKWKHATVTVCHSKT 204 (216)
Q Consensus 164 ~~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~ATVtichs~T 204 (216)
..+++.|+.++|-|.+.=+|+-.+.-|..+||+|++.++..
T Consensus 29 ~~~~~~~~~~vVTGansGIG~eta~~La~~Ga~Vv~~~R~~ 69 (314)
T KOG1208|consen 29 HGIDLSGKVALVTGATSGIGFETARELALRGAHVVLACRNE 69 (314)
T ss_pred ccccCCCcEEEEECCCCchHHHHHHHHHhCCCEEEEEeCCH
Confidence 36788999999999999999999999999999999988754
No 194
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=75.07 E-value=8.2 Score=31.95 Aligned_cols=54 Identities=30% Similarity=0.372 Sum_probs=40.9
Q ss_pred cccCCHHHHHHHHHHhCCCCCCCeEEEecCCCcccHHHHHHhhhCCCEEEEecCC
Q psy7981 149 FIPCTPNGVLELIKRTNVTIAGTNAVVLGRSKIVGTPAAELLKWKHATVTVCHSK 203 (216)
Q Consensus 149 ~~PcTa~av~~lL~~~~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~ATVtichs~ 203 (216)
.+|+.....+..+.....-..|.+|+|.|-+. +|.-++.++...|+.|+.+.+.
T Consensus 114 ~~~~~~~~a~~~l~~~~~~~~~~~vli~g~~~-~G~~~~~~a~~~g~~v~~~~~~ 167 (271)
T cd05188 114 LLPEPLATAYHALRRAGVLKPGDTVLVLGAGG-VGLLAAQLAKAAGARVIVTDRS 167 (271)
T ss_pred HhcCHHHHHHHHHHhccCCCCCCEEEEECCCH-HHHHHHHHHHHcCCeEEEEcCC
Confidence 34554444555555555445899999999999 9999999999999999887553
No 195
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=75.02 E-value=6.4 Score=35.47 Aligned_cols=36 Identities=22% Similarity=0.238 Sum_probs=32.8
Q ss_pred CCCCCCeEEEecCCCcccHHHHHHhhhCCCEEEEecC
Q psy7981 166 VTIAGTNAVVLGRSKIVGTPAAELLKWKHATVTVCHS 202 (216)
Q Consensus 166 i~l~Gk~vvViGrS~~VG~Pla~lL~~~~ATVtichs 202 (216)
.+|.||++.|||-+.+ |+-+|.++..-|+.|..+..
T Consensus 141 ~~L~gktvGIiG~G~I-G~~vA~~~~~fgm~V~~~d~ 176 (311)
T PRK08410 141 GEIKGKKWGIIGLGTI-GKRVAKIAQAFGAKVVYYST 176 (311)
T ss_pred cccCCCEEEEECCCHH-HHHHHHHHhhcCCEEEEECC
Confidence 4789999999999887 99999999999999988765
No 196
>KOG1200|consensus
Probab=74.37 E-value=4.9 Score=35.05 Aligned_cols=41 Identities=29% Similarity=0.311 Sum_probs=35.6
Q ss_pred CCCCeEEEecCCCcccHHHHHHhhhCCCEEEEecCCCCChH
Q psy7981 168 IAGTNAVVLGRSKIVGTPAAELLKWKHATVTVCHSKTKNIQ 208 (216)
Q Consensus 168 l~Gk~vvViGrS~~VG~Pla~lL~~~~ATVtichs~T~~l~ 208 (216)
++.|.++|-|.|.=+||.++.+|.++||+|.+|......-+
T Consensus 12 ~~sk~~~vtGg~sGIGrAia~~la~~Garv~v~dl~~~~A~ 52 (256)
T KOG1200|consen 12 LMSKVAAVTGGSSGIGRAIAQLLAKKGARVAVADLDSAAAE 52 (256)
T ss_pred HhcceeEEecCCchHHHHHHHHHHhcCcEEEEeecchhhHH
Confidence 46788999999999999999999999999999987765433
No 197
>PRK10339 DNA-binding transcriptional repressor EbgR; Provisional
Probab=74.23 E-value=16 Score=31.87 Aligned_cols=84 Identities=14% Similarity=0.149 Sum_probs=48.6
Q ss_pred hhcccHH---HHHHHHHHHHHHHHHHHhc------C-C--CCCceEEEEEeCC---CcchHH---HHHHHHHHHHHcCcc
Q psy7981 11 QILSGTA---VSGDIREGLKERVKKLKER------L-P--DFEPGLAIVQVGG---REDSNV---YIRMKMKAAKEIGID 72 (216)
Q Consensus 11 ~il~Gk~---vA~~i~~~ik~~v~~l~~~------~-~--~~~P~LaiI~vg~---~~as~~---Yv~~k~k~a~~~Gi~ 72 (216)
++|+|++ |+.+-++.+.+.+++|-=. . . ..+-.+..|.+.. +-.+.. ..+.....|++.|+.
T Consensus 20 rvln~~~~~~vs~~tr~rV~~~a~~lgY~pn~~~~~~~~~~~~~~~i~v~~~~~~~~~~~~f~~~l~~~i~~~~~~~g~~ 99 (327)
T PRK10339 20 RVLNDDPTLNVKEETKHRILEIAEKLEYKTSSARKLQTGAVNQHHILAIYSYQQELEINDPYYLAIRHGIETQCEKLGIE 99 (327)
T ss_pred hhhcCCCCCCcCHHHHHHHHHHHHHhCCCCchhhhhhccccccccEEEEEEccccccccCchHHHHHHHHHHHHHHCCCE
Confidence 6789986 8888888888888776200 0 0 0111233333331 222333 357777889999988
Q ss_pred eEEEeCCCCCCHHHHHHHHHHhcCCCCccEEEEe
Q psy7981 73 AQHVKLPRSITEIELLSRLKKLNEDPSVHGIIVQ 106 (216)
Q Consensus 73 ~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq 106 (216)
..... ..+ .+. ...+|||||+.
T Consensus 100 ~~~~~-~~~---~~~--------~~~~vDgiI~~ 121 (327)
T PRK10339 100 LTNCY-EHS---GLP--------DIKNVTGILIV 121 (327)
T ss_pred EEEee-ccc---ccc--------ccccCCEEEEe
Confidence 76542 111 111 13679999996
No 198
>PRK06487 glycerate dehydrogenase; Provisional
Probab=74.19 E-value=6.9 Score=35.35 Aligned_cols=36 Identities=22% Similarity=0.298 Sum_probs=32.0
Q ss_pred CCCCCCeEEEecCCCcccHHHHHHhhhCCCEEEEecC
Q psy7981 166 VTIAGTNAVVLGRSKIVGTPAAELLKWKHATVTVCHS 202 (216)
Q Consensus 166 i~l~Gk~vvViGrS~~VG~Pla~lL~~~~ATVtichs 202 (216)
.++.||++.|||-+.+ |+-+|.+|..-|+.|.....
T Consensus 144 ~~l~gktvgIiG~G~I-G~~vA~~l~~fgm~V~~~~~ 179 (317)
T PRK06487 144 VELEGKTLGLLGHGEL-GGAVARLAEAFGMRVLIGQL 179 (317)
T ss_pred cccCCCEEEEECCCHH-HHHHHHHHhhCCCEEEEECC
Confidence 4799999999999887 99999999999999986654
No 199
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=73.92 E-value=5.6 Score=35.68 Aligned_cols=49 Identities=24% Similarity=0.396 Sum_probs=36.0
Q ss_pred CHHHHHHHHHHhCCCCCCCeEEEecCCCcccHHHHHHhhhCC-CEEEEecC
Q psy7981 153 TPNGVLELIKRTNVTIAGTNAVVLGRSKIVGTPAAELLKWKH-ATVTVCHS 202 (216)
Q Consensus 153 Ta~av~~lL~~~~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~-ATVtichs 202 (216)
++...+++.+..--++.|++|+|||-+.+ |+-++..|..++ ..|+++.+
T Consensus 161 v~~~Av~~a~~~~~~l~~~~V~ViGaG~i-G~~~a~~L~~~g~~~V~v~~r 210 (311)
T cd05213 161 ISSAAVELAEKIFGNLKGKKVLVIGAGEM-GELAAKHLAAKGVAEITIANR 210 (311)
T ss_pred HHHHHHHHHHHHhCCccCCEEEEECcHHH-HHHHHHHHHHcCCCEEEEEeC
Confidence 34444566665433489999999998666 999999998876 46787764
No 200
>cd06271 PBP1_AglR_RafR_like Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the represso
Probab=73.43 E-value=32 Score=28.46 Aligned_cols=54 Identities=19% Similarity=0.177 Sum_probs=37.8
Q ss_pred CcchHHHHHHHHHHHHHcCcceEEEeCCCCCCHHHHHHHHHHhcCCCCccEEEEeCC
Q psy7981 52 REDSNVYIRMKMKAAKEIGIDAQHVKLPRSITEIELLSRLKKLNEDPSVHGIIVQMP 108 (216)
Q Consensus 52 ~~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvqlP 108 (216)
++-...+.+...+.|++.|+.+.....+.+ ++-.+.+.++-...+|+||++.-+
T Consensus 15 ~~~~~~~~~~i~~~~~~~g~~~~~~~~~~~---~~~~~~~~~~~~~~~vdgiii~~~ 68 (268)
T cd06271 15 DPFFAEFLSGLSEALAEHGYDLVLLPVDPD---EDPLEVYRRLVESGLVDGVIISRT 68 (268)
T ss_pred CccHHHHHHHHHHHHHHCCceEEEecCCCc---HHHHHHHHHHHHcCCCCEEEEecC
Confidence 566667778899999999999888776544 233344445434457999999643
No 201
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=73.25 E-value=13 Score=30.94 Aligned_cols=59 Identities=22% Similarity=0.222 Sum_probs=45.3
Q ss_pred chHHHHHHHHHHHHHcCcceEEEeCCCCCCHHHHHHHHHHhcCCCCccEEEEeCCCCCCCCCC
Q psy7981 54 DSNVYIRMKMKAAKEIGIDAQHVKLPRSITEIELLSRLKKLNEDPSVHGIIVQMPLDSDNDIN 116 (216)
Q Consensus 54 as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvqlPL~~P~~id 116 (216)
=-..+.+.-.++|++.|+++... ++...+.++..+.++++-. ..++||++..+- |....
T Consensus 12 ~~~~~~~g~~~~a~~~g~~~~~~-~~~~~d~~~q~~~i~~~i~-~~~d~Iiv~~~~--~~~~~ 70 (257)
T PF13407_consen 12 FWQQVIKGAKAAAKELGYEVEIV-FDAQNDPEEQIEQIEQAIS-QGVDGIIVSPVD--PDSLA 70 (257)
T ss_dssp HHHHHHHHHHHHHHHHTCEEEEE-EESTTTHHHHHHHHHHHHH-TTESEEEEESSS--TTTTH
T ss_pred HHHHHHHHHHHHHHHcCCEEEEe-CCCCCCHHHHHHHHHHHHH-hcCCEEEecCCC--HHHHH
Confidence 33446678899999999999987 6777778888899988854 349999998665 54443
No 202
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=73.15 E-value=4 Score=37.69 Aligned_cols=37 Identities=22% Similarity=0.244 Sum_probs=32.4
Q ss_pred CCCCCeEEEecCCCcccHHHHHHhhhCCCEEEEecCCC
Q psy7981 167 TIAGTNAVVLGRSKIVGTPAAELLKWKHATVTVCHSKT 204 (216)
Q Consensus 167 ~l~Gk~vvViGrS~~VG~Pla~lL~~~~ATVtichs~T 204 (216)
.|+||+|.|||-+.+ |+++|..|...|..|++..+..
T Consensus 13 ~LkgKtVGIIG~GsI-G~amA~nL~d~G~~ViV~~r~~ 49 (335)
T PRK13403 13 LLQGKTVAVIGYGSQ-GHAQAQNLRDSGVEVVVGVRPG 49 (335)
T ss_pred hhCcCEEEEEeEcHH-HHHHHHHHHHCcCEEEEEECcc
Confidence 468999999999876 9999999999999999985543
No 203
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=72.92 E-value=8.4 Score=34.04 Aligned_cols=51 Identities=20% Similarity=0.185 Sum_probs=31.4
Q ss_pred ccCCHHHHHHHHHH--hCCCCCCCeEEEecCCCcccHHHHHHhhhCCCEEEEecC
Q psy7981 150 IPCTPNGVLELIKR--TNVTIAGTNAVVLGRSKIVGTPAAELLKWKHATVTVCHS 202 (216)
Q Consensus 150 ~PcTa~av~~lL~~--~~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~ATVtichs 202 (216)
..|||.-.+.=... -..+|.||+++++|-...+.-+++ |....+.|+|...
T Consensus 23 ~~~T~eT~~~Ra~~~~~~gdL~gk~il~lGDDDLtSlA~a--l~~~~~~I~VvDi 75 (243)
T PF01861_consen 23 GYATPETTLRRAALMAERGDLEGKRILFLGDDDLTSLALA--LTGLPKRITVVDI 75 (243)
T ss_dssp --B-HHHHHHHHHHHHHTT-STT-EEEEES-TT-HHHHHH--HHT--SEEEEE-S
T ss_pred ccccHHHHHHHHHHHHhcCcccCCEEEEEcCCcHHHHHHH--hhCCCCeEEEEEc
Confidence 56888876653333 256789999999999999988887 4667788988865
No 204
>cd01840 SGNH_hydrolase_yrhL_like yrhL-like subfamily of SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases. Most members of this sub-family appear to co-occur with N-terminal acyltransferase domains. Might be involved in lipid metabolism.
Probab=72.72 E-value=44 Score=26.15 Aligned_cols=73 Identities=11% Similarity=0.045 Sum_probs=43.3
Q ss_pred HHHHHHHHHHhcCCCCCceEEEEEeCCCcchHHHHHHHHHHHHHcC--cceEEEeCC-CCCCHHHHHHHHHHhcCCC-Cc
Q psy7981 25 GLKERVKKLKERLPDFEPGLAIVQVGGREDSNVYIRMKMKAAKEIG--IDAQHVKLP-RSITEIELLSRLKKLNEDP-SV 100 (216)
Q Consensus 25 ~ik~~v~~l~~~~~~~~P~LaiI~vg~~~as~~Yv~~k~k~a~~~G--i~~~~~~l~-~~~~~~el~~~I~~lN~D~-~V 100 (216)
+..+.++.+.+. +..|.+++|..|.|.. .|.++..+.-+.++ ........+ ...-.+++-+.++++-++. +|
T Consensus 36 ~~~~~l~~~~~~--~~~~d~vvi~lGtNd~--~~~~nl~~ii~~~~~~~~ivlv~~~~~~~~~~~~n~~~~~~a~~~~~v 111 (150)
T cd01840 36 EAPDLIRQLKDS--GKLRKTVVIGLGTNGP--FTKDQLDELLDALGPDRQVYLVNPHVPRPWEPDVNAYLLDAAKKYKNV 111 (150)
T ss_pred HHHHHHHHHHHc--CCCCCeEEEEecCCCC--CCHHHHHHHHHHcCCCCEEEEEECCCCcchHHHHHHHHHHHHHHCCCc
Confidence 344555555542 4679999999999887 46666677776666 233222222 1223456666677765543 44
Q ss_pred c
Q psy7981 101 H 101 (216)
Q Consensus 101 ~ 101 (216)
+
T Consensus 112 ~ 112 (150)
T cd01840 112 T 112 (150)
T ss_pred E
Confidence 4
No 205
>KOG3135|consensus
Probab=72.22 E-value=11 Score=31.78 Aligned_cols=57 Identities=19% Similarity=0.269 Sum_probs=45.6
Q ss_pred ceEEEEEeCCCcchHHHHHHHHHHHHHcCcceEEEeCCCCCCHHHHHHHHHHhcCCCC
Q psy7981 42 PGLAIVQVGGREDSNVYIRMKMKAAKEIGIDAQHVKLPRSITEIELLSRLKKLNEDPS 99 (216)
Q Consensus 42 P~LaiI~vg~~~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~ 99 (216)
|+.+||...-...-..-.+..+|-.+.+|-+.+++.+|+..+ +|+++.+..-++|.+
T Consensus 2 ~kv~iv~ys~yghv~~lAe~~kkGie~a~geA~i~qVpEtl~-~evl~km~a~pkp~d 58 (203)
T KOG3135|consen 2 PKVAIVIYSTYGHVAKLAEAEKKGIESAGGEATIYQVPETLS-EEVLEKMKAPPKPSD 58 (203)
T ss_pred ceEEEEEEEcccHHHHHHHHHHhhhhccCCeeEEEEcccccC-HHHHHHhcCCCCCcc
Confidence 678888877666667778888899999999999999999866 677777777766643
No 206
>cd06354 PBP1_BmpA_PnrA_like Periplasmic binding domain of basic membrane lipoprotein, PnrA, in Treponema pallidum and its homologs from other bacteria and Archaea. Periplasmic binding domain of basic membrane lipoprotein, PnrA, in Treponema pallidum and its homologs from other bacteria and Archaea. The PnrA lipoprotein, also known as Tp0319 or TmpC, represents a novel family of bacterial purine nucleoside receptor encoded within an ATP-binding cassette (ABC) transport system (pnrABCDE). It shows a striking structural similarity to another basic membrane lipoprotein Med which regulates the competence transcription factor gene, comK, in Bacillus subtilis. The members of PnrA-like subgroup are likely to have similar nucleoside-binding functions and a similar type I periplasmic sugar-binding protein-like fold.
Probab=72.04 E-value=17 Score=31.00 Aligned_cols=61 Identities=21% Similarity=0.172 Sum_probs=41.9
Q ss_pred EEEEEeC----CCcchHHHHHHHHHHHHHcCcceEEEeCCCCCCHHHHHHHHHHhcCCCCccEEEEeCC
Q psy7981 44 LAIVQVG----GREDSNVYIRMKMKAAKEIGIDAQHVKLPRSITEIELLSRLKKLNEDPSVHGIIVQMP 108 (216)
Q Consensus 44 LaiI~vg----~~~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvqlP 108 (216)
+++|.-. ++|-....++...+.|++.|.++...... ..++..+.++.|- +.+|+||++.-+
T Consensus 2 I~~i~~~~~~~~~~f~~~~~~gi~~~~~~~gy~~~i~~~~---~~~~~~~~i~~l~-~~~vdgiI~~~~ 66 (265)
T cd06354 2 VALVTDVGGLGDKSFNQSAWEGLERAAKELGIEYKYVESK---SDADYEPNLEQLA-DAGYDLIVGVGF 66 (265)
T ss_pred EEEEeCCCCcCchhHHHHHHHHHHHHHHHcCCeEEEEecC---CHHHHHHHHHHHH-hCCCCEEEEcCc
Confidence 5555543 45666777889999999999998886433 2344456666653 367999999643
No 207
>PLN03139 formate dehydrogenase; Provisional
Probab=71.97 E-value=5 Score=37.62 Aligned_cols=38 Identities=16% Similarity=0.167 Sum_probs=33.2
Q ss_pred CCCCCCCeEEEecCCCcccHHHHHHhhhCCCEEEEecCC
Q psy7981 165 NVTIAGTNAVVLGRSKIVGTPAAELLKWKHATVTVCHSK 203 (216)
Q Consensus 165 ~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~ATVtichs~ 203 (216)
+.+|.||+|.|||-+.+ |+.++..|..-|+.|..+...
T Consensus 194 ~~~L~gktVGIVG~G~I-G~~vA~~L~afG~~V~~~d~~ 231 (386)
T PLN03139 194 AYDLEGKTVGTVGAGRI-GRLLLQRLKPFNCNLLYHDRL 231 (386)
T ss_pred CcCCCCCEEEEEeecHH-HHHHHHHHHHCCCEEEEECCC
Confidence 34799999999998875 999999999999999887653
No 208
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=71.65 E-value=4.7 Score=37.28 Aligned_cols=35 Identities=29% Similarity=0.401 Sum_probs=31.2
Q ss_pred CCCCeEEEecCCCcccHHHHHHhhhCCCEEEEecCC
Q psy7981 168 IAGTNAVVLGRSKIVGTPAAELLKWKHATVTVCHSK 203 (216)
Q Consensus 168 l~Gk~vvViGrS~~VG~Pla~lL~~~~ATVtichs~ 203 (216)
+.+++|+|+|.+ .+|+-.+..|...||.|+++...
T Consensus 165 l~~~~VlViGaG-~vG~~aa~~a~~lGa~V~v~d~~ 199 (370)
T TIGR00518 165 VEPGDVTIIGGG-VVGTNAAKMANGLGATVTILDIN 199 (370)
T ss_pred CCCceEEEEcCC-HHHHHHHHHHHHCCCeEEEEECC
Confidence 578899999997 57999999999999999999764
No 209
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=71.56 E-value=9.5 Score=33.68 Aligned_cols=52 Identities=17% Similarity=0.051 Sum_probs=39.0
Q ss_pred ccCCHHHHHHHHHHhCCCCCCCeEEEecCCCcccHHHHHHhhhCCCEEEEec
Q psy7981 150 IPCTPNGVLELIKRTNVTIAGTNAVVLGRSKIVGTPAAELLKWKHATVTVCH 201 (216)
Q Consensus 150 ~PcTa~av~~lL~~~~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~ATVtich 201 (216)
+||.....+..|.+..---.|.+|+|.|.+.-||.-+..++..+|++|+..-
T Consensus 132 l~~~~~tA~~~l~~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~ 183 (338)
T cd08295 132 LGMPGLTAYAGFYEVCKPKKGETVFVSAASGAVGQLVGQLAKLKGCYVVGSA 183 (338)
T ss_pred cccHHHHHHHHHHHhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEe
Confidence 4555455555554433334799999999999999999999999999987643
No 210
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=71.41 E-value=8.9 Score=36.99 Aligned_cols=52 Identities=17% Similarity=0.133 Sum_probs=39.1
Q ss_pred CHHHHHHHHHHh---C--CCCCCCeEEEec----------------CCCcccHHHHHHhhhCCCEEEEecCCC
Q psy7981 153 TPNGVLELIKRT---N--VTIAGTNAVVLG----------------RSKIVGTPAAELLKWKHATVTVCHSKT 204 (216)
Q Consensus 153 Ta~av~~lL~~~---~--i~l~Gk~vvViG----------------rS~~VG~Pla~lL~~~~ATVtichs~T 204 (216)
.|.-|++.+.++ + -+|+||+|+|-+ -|.--|.-+|.-+..+||.||+.|-.+
T Consensus 234 e~~~I~~~v~~~~~~~~~~~l~gkkvLITaGpT~E~IDpVR~ItN~SSGkmG~alA~aa~~~GA~VtlI~Gp~ 306 (475)
T PRK13982 234 EPLEIAAAAEALLRPPQPKPLAGRRVLITAGPTHEPIDPVRYIANRSSGKQGFAIAAAAAAAGAEVTLISGPV 306 (475)
T ss_pred CHHHHHHHHHHHHhhccccccCCCEEEEecCCccccCCcceeeCCCCchHHHHHHHHHHHHCCCcEEEEeCCc
Confidence 344455555443 1 369999999876 456789999999999999999998443
No 211
>PLN00203 glutamyl-tRNA reductase
Probab=71.36 E-value=6.7 Score=38.19 Aligned_cols=50 Identities=20% Similarity=0.236 Sum_probs=39.3
Q ss_pred CHHHHHHHHHHhC--CCCCCCeEEEecCCCcccHHHHHHhhhCCC-EEEEecCC
Q psy7981 153 TPNGVLELIKRTN--VTIAGTNAVVLGRSKIVGTPAAELLKWKHA-TVTVCHSK 203 (216)
Q Consensus 153 Ta~av~~lL~~~~--i~l~Gk~vvViGrS~~VG~Pla~lL~~~~A-TVtichs~ 203 (216)
-+-+.+++.+..- .++.|++|+|||-+. .|+.++..|..+|+ .|++++..
T Consensus 247 v~s~Av~la~~~~~~~~l~~kkVlVIGAG~-mG~~~a~~L~~~G~~~V~V~nRs 299 (519)
T PLN00203 247 VSSAAVELALMKLPESSHASARVLVIGAGK-MGKLLVKHLVSKGCTKMVVVNRS 299 (519)
T ss_pred HHHHHHHHHHHhcCCCCCCCCEEEEEeCHH-HHHHHHHHHHhCCCCeEEEEeCC
Confidence 4556778777653 259999999999955 59999999999997 58888653
No 212
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=70.92 E-value=9.2 Score=33.06 Aligned_cols=51 Identities=20% Similarity=0.311 Sum_probs=36.5
Q ss_pred cccCCHHHHHHHHHHhCCCCCCCeEEEecCCCcccHHHHHHhhhCCCE-EEEec
Q psy7981 149 FIPCTPNGVLELIKRTNVTIAGTNAVVLGRSKIVGTPAAELLKWKHAT-VTVCH 201 (216)
Q Consensus 149 ~~PcTa~av~~lL~~~~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~AT-Vtich 201 (216)
.++|....++..+++.+. ..|.+|+|.|-+ .||.-.+.++...|+. |+++.
T Consensus 101 ~l~~~~~ta~~al~~~~~-~~g~~VlV~G~G-~vG~~~~~~ak~~G~~~Vi~~~ 152 (280)
T TIGR03366 101 PAGCATATVMAALEAAGD-LKGRRVLVVGAG-MLGLTAAAAAAAAGAARVVAAD 152 (280)
T ss_pred HhhhHHHHHHHHHHhccC-CCCCEEEEECCC-HHHHHHHHHHHHcCCCEEEEEC
Confidence 345544444555555554 389999999975 6899988888889998 77663
No 213
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=70.74 E-value=4.3 Score=39.45 Aligned_cols=37 Identities=19% Similarity=0.249 Sum_probs=31.9
Q ss_pred CCCCCeEEEecCCCcccHHHHHHhhhCCCEEEEecCCC
Q psy7981 167 TIAGTNAVVLGRSKIVGTPAAELLKWKHATVTVCHSKT 204 (216)
Q Consensus 167 ~l~Gk~vvViGrS~~VG~Pla~lL~~~~ATVtichs~T 204 (216)
+++||+|+|||-|+. |-=+|.-|....+.|+++++..
T Consensus 180 ~f~gKrVlVVG~g~S-g~DIa~el~~~a~~v~~s~R~~ 216 (531)
T PF00743_consen 180 PFKGKRVLVVGGGNS-GADIAVELSRVAKKVYLSTRRG 216 (531)
T ss_dssp GGTTSEEEEESSSHH-HHHHHHHHTTTSCCEEEECC--
T ss_pred hcCCCEEEEEeCCHh-HHHHHHHHHHhcCCeEEEEecc
Confidence 589999999999997 8889999999888999988654
No 214
>cd06312 PBP1_ABC_sugar_binding_like_4 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=70.56 E-value=20 Score=30.17 Aligned_cols=53 Identities=17% Similarity=0.151 Sum_probs=37.6
Q ss_pred CcchHHHHHHHHHHHHHcCcceEEEeCCCCCCHHHHHHHHHHhcCCCCccEEEEe
Q psy7981 52 REDSNVYIRMKMKAAKEIGIDAQHVKLPRSITEIELLSRLKKLNEDPSVHGIIVQ 106 (216)
Q Consensus 52 ~~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq 106 (216)
++--...++...++|++.|+.+....... .+.+...+.++.+... .++||++.
T Consensus 12 ~~~~~~~~~g~~~~~~~~g~~v~~~~~~~-~~~~~~~~~i~~l~~~-~vdgiii~ 64 (271)
T cd06312 12 DPFWTVVKNGAEDAAKDLGVDVEYRGPET-FDVADMARLIEAAIAA-KPDGIVVT 64 (271)
T ss_pred CcHHHHHHHHHHHHHHHhCCEEEEECCCC-CCHHHHHHHHHHHHHh-CCCEEEEe
Confidence 34444556778899999999988765543 3455666777776654 79999995
No 215
>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases. yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH
Probab=70.15 E-value=9.4 Score=33.06 Aligned_cols=50 Identities=18% Similarity=0.140 Sum_probs=36.7
Q ss_pred CHHHHHHHHHHhCCCCCCCeEEEecCCCcccHHHHHHhhhCCCEEEEecC
Q psy7981 153 TPNGVLELIKRTNVTIAGTNAVVLGRSKIVGTPAAELLKWKHATVTVCHS 202 (216)
Q Consensus 153 Ta~av~~lL~~~~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~ATVtichs 202 (216)
|+.-.+.-+...++...|.+|+|.|.+..+|.-+..+....|+.|+...+
T Consensus 130 ta~~~l~~~~~~~~~~~~~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~ 179 (326)
T cd08289 130 TAALSIHRLEENGLTPEQGPVLVTGATGGVGSLAVSILAKLGYEVVASTG 179 (326)
T ss_pred HHHHHHHHHHhcCCCCCCCEEEEEcCCchHHHHHHHHHHHCCCeEEEEec
Confidence 33333443444444446889999999999999999999999999876543
No 216
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=69.92 E-value=6.3 Score=36.14 Aligned_cols=35 Identities=20% Similarity=0.270 Sum_probs=30.9
Q ss_pred CCCeEEEecCCCcccHHHHHHhhhCCCEEEEecCCC
Q psy7981 169 AGTNAVVLGRSKIVGTPAAELLKWKHATVTVCHSKT 204 (216)
Q Consensus 169 ~Gk~vvViGrS~~VG~Pla~lL~~~~ATVtichs~T 204 (216)
.|++|+|||-+ .+|--+|..|.+.|..||+.+...
T Consensus 143 ~~~~vvViGgG-~ig~E~A~~l~~~g~~Vtlv~~~~ 177 (396)
T PRK09754 143 PERSVVIVGAG-TIGLELAASATQRRCKVTVIELAA 177 (396)
T ss_pred cCCeEEEECCC-HHHHHHHHHHHHcCCeEEEEecCC
Confidence 58999999976 679999999999999999998654
No 217
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=69.76 E-value=5.8 Score=39.22 Aligned_cols=38 Identities=26% Similarity=0.252 Sum_probs=31.1
Q ss_pred CCCCCeEEEecCCCcccHHHHHHhhhCCC-EEEEecCCCC
Q psy7981 167 TIAGTNAVVLGRSKIVGTPAAELLKWKHA-TVTVCHSKTK 205 (216)
Q Consensus 167 ~l~Gk~vvViGrS~~VG~Pla~lL~~~~A-TVtichs~T~ 205 (216)
.+.||+|+|||-+ .+|.=.+..+++.|| .||+.+..+.
T Consensus 465 ~~~gk~VvVIGgG-~~a~d~A~~a~r~ga~~Vt~i~~~~~ 503 (654)
T PRK12769 465 NTAGLNVVVLGGG-DTAMDCVRTALRHGASNVTCAYRRDE 503 (654)
T ss_pred cCCCCeEEEECCc-HHHHHHHHHHHHcCCCeEEEeEecCC
Confidence 4689999999955 478888888888998 6999887654
No 218
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=69.75 E-value=6.2 Score=31.22 Aligned_cols=35 Identities=23% Similarity=0.246 Sum_probs=30.1
Q ss_pred CCeEEEecCCCcccHHHHHHhhhCCCEEEEecCCCC
Q psy7981 170 GTNAVVLGRSKIVGTPAAELLKWKHATVTVCHSKTK 205 (216)
Q Consensus 170 Gk~vvViGrS~~VG~Pla~lL~~~~ATVtichs~T~ 205 (216)
-.+|.|||.++ ||.-|+..|.+.|..|..+++++.
T Consensus 10 ~l~I~iIGaGr-VG~~La~aL~~ag~~v~~v~srs~ 44 (127)
T PF10727_consen 10 RLKIGIIGAGR-VGTALARALARAGHEVVGVYSRSP 44 (127)
T ss_dssp --EEEEECTSC-CCCHHHHHHHHTTSEEEEESSCHH
T ss_pred ccEEEEECCCH-HHHHHHHHHHHCCCeEEEEEeCCc
Confidence 45899999966 599999999999999999999875
No 219
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=69.60 E-value=5.8 Score=36.32 Aligned_cols=45 Identities=18% Similarity=0.350 Sum_probs=36.3
Q ss_pred CCCCCeEEEecCCCcccHHHHHHhhhCCC-EEEEecCCCCChHHHHh
Q psy7981 167 TIAGTNAVVLGRSKIVGTPAAELLKWKHA-TVTVCHSKTKNIQDVVK 212 (216)
Q Consensus 167 ~l~Gk~vvViGrS~~VG~Pla~lL~~~~A-TVtichs~T~~l~~~~k 212 (216)
.|+.++|+|||-+.+ |.+++..|...|- .++++...+-.+...-|
T Consensus 21 ~L~~~~VlVvG~Ggl-Gs~va~~La~aGvg~i~lvD~D~Ve~sNL~R 66 (339)
T PRK07688 21 KLREKHVLIIGAGAL-GTANAEMLVRAGVGKVTIVDRDYVEWSNLQR 66 (339)
T ss_pred HhcCCcEEEECCCHH-HHHHHHHHHHcCCCeEEEEeCCccCHHHcCc
Confidence 468899999999765 9999999999988 89999987654444333
No 220
>cd01835 SGNH_hydrolase_like_3 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=69.51 E-value=57 Score=26.15 Aligned_cols=96 Identities=14% Similarity=0.051 Sum_probs=52.8
Q ss_pred CCceEEEEEeCCCcchH-----------HHHHHHHHHHHH--cCcceEEEeCCCCC---------CHHHHHHHHHHhcCC
Q psy7981 40 FEPGLAIVQVGGREDSN-----------VYIRMKMKAAKE--IGIDAQHVKLPRSI---------TEIELLSRLKKLNED 97 (216)
Q Consensus 40 ~~P~LaiI~vg~~~as~-----------~Yv~~k~k~a~~--~Gi~~~~~~l~~~~---------~~~el~~~I~~lN~D 97 (216)
.+|.+++|.+|-|.... .|.+...+..++ -+..+..+..+... ..+++-+.++++.+.
T Consensus 68 ~~pd~V~i~~G~ND~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~vi~~~~~p~~~~~~~~~~~~~~~~n~~~~~~a~~ 147 (193)
T cd01835 68 NVPNRLVLSVGLNDTARGGRKRPQLSARAFLFGLNQLLEEAKRLVPVLVVGPTPVDEAKMPYSNRRIARLETAFAEVCLR 147 (193)
T ss_pred CCCCEEEEEecCcccccccCcccccCHHHHHHHHHHHHHHHhcCCcEEEEeCCCccccccchhhHHHHHHHHHHHHHHHH
Confidence 47999999999987532 354444443332 25555554443221 223455677777766
Q ss_pred CCccEEEEeCCCCCCCCCCHHHHhhhcCCCCCcccCCccchhHhhc
Q psy7981 98 PSVHGIIVQMPLDSDNDINAMLVTDSVSPEKDVDGLNTINEGRVAI 143 (216)
Q Consensus 98 ~~V~GIlvqlPL~~P~~id~~~i~~~I~p~KDVDG~~~~n~G~l~~ 143 (216)
.++.-|=+..++ ..+- ...+.+.+ -||+||...|.-..
T Consensus 148 ~~~~~vd~~~~~--~~~~---~~~~~~~~---~Dg~Hpn~~G~~~~ 185 (193)
T cd01835 148 RDVPFLDTFTPL--LNHP---QWRRELAA---TDGIHPNAAGYGWL 185 (193)
T ss_pred cCCCeEeCccch--hcCc---HHHHhhhc---cCCCCCCHHHHHHH
Confidence 666555555454 2221 11111111 39999988887544
No 221
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=69.36 E-value=15 Score=33.12 Aligned_cols=53 Identities=26% Similarity=0.162 Sum_probs=38.7
Q ss_pred cccCCHHHHHHHHHHhCCCCCCCeEEEecCCCcccHHHHHHhhhCCCEEEEecC
Q psy7981 149 FIPCTPNGVLELIKRTNVTIAGTNAVVLGRSKIVGTPAAELLKWKHATVTVCHS 202 (216)
Q Consensus 149 ~~PcTa~av~~lL~~~~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~ATVtichs 202 (216)
.++|.....+..+..++..-.|.+|+|.|. .-||.-...++...|+.|++.-.
T Consensus 163 ~l~~~~~ta~~al~~~~~~~~g~~VlV~G~-G~vG~~avq~Ak~~Ga~vi~~~~ 215 (360)
T PLN02586 163 PLLCAGITVYSPMKYYGMTEPGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISS 215 (360)
T ss_pred hhhcchHHHHHHHHHhcccCCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeC
Confidence 345555555555665554457999999996 56799999999999999876543
No 222
>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina
Probab=69.21 E-value=12 Score=32.30 Aligned_cols=53 Identities=19% Similarity=0.099 Sum_probs=39.6
Q ss_pred cccCCHHHHHHHHHHhCCCCCCCeEEEecCCCcccHHHHHHhhhCCCEEEEecC
Q psy7981 149 FIPCTPNGVLELIKRTNVTIAGTNAVVLGRSKIVGTPAAELLKWKHATVTVCHS 202 (216)
Q Consensus 149 ~~PcTa~av~~lL~~~~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~ATVtichs 202 (216)
.+||.+..++..++...+. .|..|+|.|.+..+|.-++.+....|+.|+..-+
T Consensus 120 ~~~~~~~ta~~~~~~~~~~-~g~~vlI~g~~g~ig~~~~~~a~~~G~~v~~~~~ 172 (324)
T cd08292 120 QLIAMPLSALMLLDFLGVK-PGQWLIQNAAGGAVGKLVAMLAAARGINVINLVR 172 (324)
T ss_pred hccccHHHHHHHHHhhCCC-CCCEEEEcccccHHHHHHHHHHHHCCCeEEEEec
Confidence 3455555555555543333 6899999999999999999999999999877643
No 223
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=68.97 E-value=10 Score=35.56 Aligned_cols=36 Identities=28% Similarity=0.324 Sum_probs=31.4
Q ss_pred CCCeEEEecCCCcccHHHHHHhhhCCC-EEEEecCCCC
Q psy7981 169 AGTNAVVLGRSKIVGTPAAELLKWKHA-TVTVCHSKTK 205 (216)
Q Consensus 169 ~Gk~vvViGrS~~VG~Pla~lL~~~~A-TVtichs~T~ 205 (216)
.|++|+|||-+ .+|.-+|..|.+.|+ .||+++..+.
T Consensus 272 ~g~~VvViGgG-~~g~e~A~~l~~~G~~~Vtlv~~~~~ 308 (457)
T PRK11749 272 VGKRVVVIGGG-NTAMDAARTAKRLGAESVTIVYRRGR 308 (457)
T ss_pred CCCeEEEECCC-HHHHHHHHHHHHcCCCeEEEeeecCc
Confidence 69999999977 579999999999998 8999987653
No 224
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=68.62 E-value=4.8 Score=36.88 Aligned_cols=41 Identities=17% Similarity=0.273 Sum_probs=34.7
Q ss_pred CCCCCCCeEEEecCCCcccHHHHHHhhhCCC-EEEEecCCCCC
Q psy7981 165 NVTIAGTNAVVLGRSKIVGTPAAELLKWKHA-TVTVCHSKTKN 206 (216)
Q Consensus 165 ~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~A-TVtichs~T~~ 206 (216)
+-.|++++|+|||-+. +|.+++..|...|. .+|++....-.
T Consensus 19 Q~~L~~~~VlIiG~Gg-lGs~va~~La~aGvg~i~lvD~D~ve 60 (338)
T PRK12475 19 QRKIREKHVLIVGAGA-LGAANAEALVRAGIGKLTIADRDYVE 60 (338)
T ss_pred HHhhcCCcEEEECCCH-HHHHHHHHHHHcCCCEEEEEcCCccc
Confidence 3457899999999987 69999999999997 89999877643
No 225
>cd06292 PBP1_LacI_like_10 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=68.00 E-value=52 Score=27.44 Aligned_cols=56 Identities=11% Similarity=0.058 Sum_probs=39.5
Q ss_pred CCcchHHHHHHHHHHHHHcCcceEEEeCCCCCCHHHHHHHHHHhcCCCCccEEEEeCCC
Q psy7981 51 GREDSNVYIRMKMKAAKEIGIDAQHVKLPRSITEIELLSRLKKLNEDPSVHGIIVQMPL 109 (216)
Q Consensus 51 ~~~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvqlPL 109 (216)
+++-....++...++|++.|......... .+.+...+.++.|... +||||++.-+.
T Consensus 10 ~~~~~~~~~~gi~~~~~~~g~~~~~~~~~--~~~~~~~~~i~~l~~~-~vdgiIi~~~~ 65 (273)
T cd06292 10 SNPIFPAFAEAIEAALAQYGYTVLLCNTY--RGGVSEADYVEDLLAR-GVRGVVFISSL 65 (273)
T ss_pred cCchHHHHHHHHHHHHHHCCCEEEEEeCC--CChHHHHHHHHHHHHc-CCCEEEEeCCC
Confidence 35666677899999999999888665433 3345555666666664 79999997544
No 226
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=67.99 E-value=6.8 Score=35.55 Aligned_cols=36 Identities=22% Similarity=0.285 Sum_probs=31.2
Q ss_pred CCCeEEEecCCCcccHHHHHHhhhCCCEEEEecCCCC
Q psy7981 169 AGTNAVVLGRSKIVGTPAAELLKWKHATVTVCHSKTK 205 (216)
Q Consensus 169 ~Gk~vvViGrS~~VG~Pla~lL~~~~ATVtichs~T~ 205 (216)
.+++|+|||-+ .+|--+|..|.+++..||+.+....
T Consensus 140 ~~~~vvViGgG-~~g~e~A~~L~~~g~~Vtlv~~~~~ 175 (377)
T PRK04965 140 DAQRVLVVGGG-LIGTELAMDLCRAGKAVTLVDNAAS 175 (377)
T ss_pred cCCeEEEECCC-HHHHHHHHHHHhcCCeEEEEecCCc
Confidence 68999999965 5699999999999999999987653
No 227
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=67.69 E-value=6.3 Score=41.02 Aligned_cols=38 Identities=26% Similarity=0.347 Sum_probs=33.5
Q ss_pred CCCCCeEEEecCCCcccHHHHHHhhhCCCEEEEecCCCC
Q psy7981 167 TIAGTNAVVLGRSKIVGTPAAELLKWKHATVTVCHSKTK 205 (216)
Q Consensus 167 ~l~Gk~vvViGrS~~VG~Pla~lL~~~~ATVtichs~T~ 205 (216)
...||+|+|||-++ +|.=.|..+.+.||.||+.+.++.
T Consensus 444 ~~~Gk~VvVIGGG~-tA~D~A~ta~R~Ga~Vtlv~rr~~ 481 (944)
T PRK12779 444 EVKGKEVFVIGGGN-TAMDAARTAKRLGGNVTIVYRRTK 481 (944)
T ss_pred ccCCCEEEEECCCH-HHHHHHHHHHHcCCEEEEEEecCc
Confidence 35799999999986 599999999999999999998763
No 228
>PLN02306 hydroxypyruvate reductase
Probab=67.45 E-value=12 Score=34.98 Aligned_cols=37 Identities=16% Similarity=0.240 Sum_probs=31.8
Q ss_pred CCCCCCCeEEEecCCCcccHHHHHHhh-hCCCEEEEecC
Q psy7981 165 NVTIAGTNAVVLGRSKIVGTPAAELLK-WKHATVTVCHS 202 (216)
Q Consensus 165 ~i~l~Gk~vvViGrS~~VG~Pla~lL~-~~~ATVtichs 202 (216)
+.++.||+|.|||-+.+ |+-+|.+|. .-|+.|.....
T Consensus 160 g~~L~gktvGIiG~G~I-G~~vA~~l~~~fGm~V~~~d~ 197 (386)
T PLN02306 160 GNLLKGQTVGVIGAGRI-GSAYARMMVEGFKMNLIYYDL 197 (386)
T ss_pred CcCCCCCEEEEECCCHH-HHHHHHHHHhcCCCEEEEECC
Confidence 45789999999999987 999999985 78999987753
No 229
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=67.14 E-value=15 Score=31.92 Aligned_cols=52 Identities=21% Similarity=0.176 Sum_probs=38.2
Q ss_pred ccCCHHHHHHHHHHhCCCCCCCeEEEecCCCcccHHHHHHhhhCCCEEEEec
Q psy7981 150 IPCTPNGVLELIKRTNVTIAGTNAVVLGRSKIVGTPAAELLKWKHATVTVCH 201 (216)
Q Consensus 150 ~PcTa~av~~lL~~~~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~ATVtich 201 (216)
+||.+...+..|.+..---.|.+|+|.|.+.-||.-+..+....|++|+.+-
T Consensus 124 ~~~~~~ta~~al~~~~~~~~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~ 175 (329)
T cd08294 124 LGMPGLTAYFGLLEICKPKAGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCA 175 (329)
T ss_pred cccHHHHHHHHHHHhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEe
Confidence 4555554555554333234799999999999999999999999999987654
No 230
>cd06277 PBP1_LacI_like_1 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=67.12 E-value=41 Score=28.06 Aligned_cols=54 Identities=19% Similarity=0.040 Sum_probs=37.7
Q ss_pred CcchHHHHHHHHHHHHHcCcceEEEeCCCCCCHHHHHHHHHHhcCCCCccEEEEeCC
Q psy7981 52 REDSNVYIRMKMKAAKEIGIDAQHVKLPRSITEIELLSRLKKLNEDPSVHGIIVQMP 108 (216)
Q Consensus 52 ~~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvqlP 108 (216)
++-.....+...+.|++.|.++.....+.+. ++..+.++.+.+ .+||||++.-+
T Consensus 14 ~~~~~~~~~~i~~~~~~~g~~~~~~~~~~~~--~~~~~~~~~l~~-~~vdgiii~~~ 67 (268)
T cd06277 14 PAFYSEIYRAIEEEAKKYGYNLILKFVSDED--EEEFELPSFLED-GKVDGIILLGG 67 (268)
T ss_pred CCcHHHHHHHHHHHHHHcCCEEEEEeCCCCh--HHHHHHHHHHHH-CCCCEEEEeCC
Confidence 6666777788889999999998877665432 333445555543 57999999643
No 231
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=66.93 E-value=15 Score=32.95 Aligned_cols=52 Identities=15% Similarity=0.045 Sum_probs=38.3
Q ss_pred ccCCHHHHHHHHHHhCCCCCCCeEEEecCCCcccHHHHHHhhhCCCEEEEec
Q psy7981 150 IPCTPNGVLELIKRTNVTIAGTNAVVLGRSKIVGTPAAELLKWKHATVTVCH 201 (216)
Q Consensus 150 ~PcTa~av~~lL~~~~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~ATVtich 201 (216)
+||.....+..|....-.-.|.+|+|.|.+.-||.-...+....|++|...-
T Consensus 139 l~~~~~TA~~al~~~~~~~~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~ 190 (348)
T PLN03154 139 LGMAGFTAYAGFYEVCSPKKGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSA 190 (348)
T ss_pred cccHHHHHHHHHHHhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEc
Confidence 4555555555554333334799999999999999999999999999887653
No 232
>PRK10262 thioredoxin reductase; Provisional
Probab=66.59 E-value=7.8 Score=34.21 Aligned_cols=36 Identities=17% Similarity=0.220 Sum_probs=31.9
Q ss_pred CCCCeEEEecCCCcccHHHHHHhhhCCCEEEEecCCC
Q psy7981 168 IAGTNAVVLGRSKIVGTPAAELLKWKHATVTVCHSKT 204 (216)
Q Consensus 168 l~Gk~vvViGrS~~VG~Pla~lL~~~~ATVtichs~T 204 (216)
..|++|+|||-+. +|-=+|..|.+.+..||+++...
T Consensus 144 ~~g~~vvVvGgG~-~g~e~A~~l~~~~~~Vtlv~~~~ 179 (321)
T PRK10262 144 YRNQKVAVIGGGN-TAVEEALYLSNIASEVHLIHRRD 179 (321)
T ss_pred cCCCEEEEECCCH-HHHHHHHHHHhhCCEEEEEEECC
Confidence 4799999999995 59999999999999999998764
No 233
>cd06286 PBP1_CcpB_like Ligand-binding domain of a novel transcription factor implicated in catabolite repression in Bacillus and Clostridium species. This group includes the ligand-binding domain of a novel transcription factor implicated in catabolite repression in Bacillus and Clostridium species. CcpB is 30% identical in sequence to CcpA which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. Like CcpA, the DNA-binding protein CcpB exerts its catabolite-repressing effect by a mechanism dependent on the presence of HPr(Ser-P), the small phosphocarrier proteins of the phosphoenolpyruvate-sugar phosphotransferase system, but with a less significant degree.
Probab=66.55 E-value=42 Score=27.78 Aligned_cols=54 Identities=19% Similarity=0.135 Sum_probs=37.6
Q ss_pred CCcchHHHHHHHHHHHHHcCcceEEEeCCCCCCHHHHHHHHHHhcCCCCccEEEEeC
Q psy7981 51 GREDSNVYIRMKMKAAKEIGIDAQHVKLPRSITEIELLSRLKKLNEDPSVHGIIVQM 107 (216)
Q Consensus 51 ~~~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvql 107 (216)
+++-.....+...+.|++.|.+.....- +.+.+...+.++.++. ..|+||++.-
T Consensus 10 ~~~~~~~i~~gi~~~~~~~g~~~~~~~~--~~~~~~~~~~i~~l~~-~~vdgiii~~ 63 (260)
T cd06286 10 NHPYFSQLVDGIEKAALKHGYKVVLLQT--NYDKEKELEYLELLKT-KQVDGLILCS 63 (260)
T ss_pred CCchHHHHHHHHHHHHHHcCCEEEEEeC--CCChHHHHHHHHHHHH-cCCCEEEEeC
Confidence 3555566668888999999988876543 3344555566776655 4799999963
No 234
>cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational
Probab=66.17 E-value=37 Score=28.16 Aligned_cols=52 Identities=13% Similarity=0.036 Sum_probs=38.1
Q ss_pred CcchHHHHHHHHHHHHHcCcceEEEeCCCCCCHHHHHHHHHHhcCCCCccEEEEe
Q psy7981 52 REDSNVYIRMKMKAAKEIGIDAQHVKLPRSITEIELLSRLKKLNEDPSVHGIIVQ 106 (216)
Q Consensus 52 ~~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq 106 (216)
++-...+.+...+.|++.|+.+... ..+-++++..+.++.+... .|+||++.
T Consensus 11 ~~~~~~~~~~i~~~~~~~g~~~~~~--~~~~~~~~~~~~~~~l~~~-~vdgiii~ 62 (268)
T cd06273 11 NAIFARVIQAFQETLAAHGYTLLVA--SSGYDLDREYAQARKLLER-GVDGLALI 62 (268)
T ss_pred CchHHHHHHHHHHHHHHCCCEEEEe--cCCCCHHHHHHHHHHHHhc-CCCEEEEe
Confidence 4555666788899999999888764 3444556666777777655 79999986
No 235
>PF12683 DUF3798: Protein of unknown function (DUF3798); InterPro: IPR024258 This entry represents functionally uncharacterised proteins that are found in bacteria. They are typically between 247 and 417 amino acids in length. Most of the proteins in this entry have an N-terminal lipoprotein attachment site. These proteins have distant similarity to periplasmic ligand binding families suggesting that this family has a similar role.; PDB: 3QI7_A.
Probab=66.07 E-value=19 Score=32.43 Aligned_cols=67 Identities=21% Similarity=0.314 Sum_probs=49.2
Q ss_pred EEeCCCcchHHHHHHHHHHHHHcCc-ceEEEeCCCCC--CHHHHHHHHHHhcCCCCccEEEEeCCCCCCCCC
Q psy7981 47 VQVGGREDSNVYIRMKMKAAKEIGI-DAQHVKLPRSI--TEIELLSRLKKLNEDPSVHGIIVQMPLDSDNDI 115 (216)
Q Consensus 47 I~vg~~~as~~Yv~~k~k~a~~~Gi-~~~~~~l~~~~--~~~el~~~I~~lN~D~~V~GIlvqlPL~~P~~i 115 (216)
|..|.-..|.-..|...+..+++|= ...+..+|++. .+|..++.|..|-.||+|-.|+|-.=. |-.+
T Consensus 7 ivTgtvSq~ed~~r~Ae~l~~~Yg~~~I~h~tyPdnf~~e~EttIskI~~lAdDp~mKaIVv~q~v--pGt~ 76 (275)
T PF12683_consen 7 IVTGTVSQSEDEYRGAEELIKKYGDVMIKHVTYPDNFMSEQETTISKIVSLADDPDMKAIVVSQAV--PGTA 76 (275)
T ss_dssp EEE--TTT-HHHHHHHHHHHHHHHHHEEEEEE--TTGGGCHHHHHHHHHGGGG-TTEEEEEEE-SS-----H
T ss_pred EEeCCcccChHHHHHHHHHHHHhCcceEEEEeCCCcccchHHHHHHHHHHhccCCCccEEEEeCCC--cchH
Confidence 3446677888888999999999998 88999999984 678899999999999999999998887 5443
No 236
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=65.96 E-value=11 Score=37.31 Aligned_cols=38 Identities=26% Similarity=0.286 Sum_probs=32.2
Q ss_pred CCCCCeEEEecCCCcccHHHHHHhhhCCC-EEEEecCCCC
Q psy7981 167 TIAGTNAVVLGRSKIVGTPAAELLKWKHA-TVTVCHSKTK 205 (216)
Q Consensus 167 ~l~Gk~vvViGrS~~VG~Pla~lL~~~~A-TVtichs~T~ 205 (216)
...||+|+|||-++ +|.-+|..|.+.|+ .||+.+..+.
T Consensus 320 ~~~gk~VvVIGgG~-~a~e~A~~l~~~Ga~~Vtlv~r~~~ 358 (652)
T PRK12814 320 LHPGKKVVVIGGGN-TAIDAARTALRLGAESVTILYRRTR 358 (652)
T ss_pred ccCCCeEEEECCCH-HHHHHHHHHHHcCCCeEEEeeecCc
Confidence 45799999999886 59999999998887 5999987764
No 237
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=65.95 E-value=7.2 Score=35.14 Aligned_cols=36 Identities=25% Similarity=0.228 Sum_probs=30.4
Q ss_pred CCCCeEEEecCCCcccHHHHHHhhhCCCE-EEEecCCC
Q psy7981 168 IAGTNAVVLGRSKIVGTPAAELLKWKHAT-VTVCHSKT 204 (216)
Q Consensus 168 l~Gk~vvViGrS~~VG~Pla~lL~~~~AT-Vtichs~T 204 (216)
+.|++|+|||.+. +|--+|..|.++++. ||+.+...
T Consensus 170 ~~g~~vvViG~G~-~g~e~A~~l~~~g~~~Vtvi~~~~ 206 (352)
T PRK12770 170 VEGKKVVVVGAGL-TAVDAALEAVLLGAEKVYLAYRRT 206 (352)
T ss_pred cCCCEEEEECCCH-HHHHHHHHHHHcCCCeEEEEeecc
Confidence 4599999999985 699999999888987 99997643
No 238
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=65.93 E-value=65 Score=30.50 Aligned_cols=64 Identities=23% Similarity=0.304 Sum_probs=43.2
Q ss_pred CCceEEEEEeCCCcchHHHHHHHHHHHHHcCcceE----------------------EEeCCCCCCHHHHHHHHHHhcCC
Q psy7981 40 FEPGLAIVQVGGREDSNVYIRMKMKAAKEIGIDAQ----------------------HVKLPRSITEIELLSRLKKLNED 97 (216)
Q Consensus 40 ~~P~LaiI~vg~~~as~~Yv~~k~k~a~~~Gi~~~----------------------~~~l~~~~~~~el~~~I~~lN~D 97 (216)
.-+.++||..+.-.+.. -...|++.|+++- .+++....+.+.+.+.++.+-+|
T Consensus 294 ~g~rvaivs~sGG~g~l-----~aD~~~~~Gl~lp~ls~~t~~~L~~~lp~~~~~~NPlDl~~~~~~~~~~~al~~l~~d 368 (447)
T TIGR02717 294 KGNRVAIITNAGGPGVI-----ATDACEENGLELAELSEATKNKLRNILPPEASIKNPVDVLGDATPERYAKALKTVAED 368 (447)
T ss_pred CCCeEEEEECCchHHHH-----HHHHHHHcCCCcCCCCHHHHHHHHHhCccccccCCCEecCCCCCHHHHHHHHHHHHcC
Confidence 34679999888554432 3566777777653 24444445667777888888888
Q ss_pred CCccEEEEeCC
Q psy7981 98 PSVHGIIVQMP 108 (216)
Q Consensus 98 ~~V~GIlvqlP 108 (216)
|+||++++-..
T Consensus 369 p~vd~Vlv~~~ 379 (447)
T TIGR02717 369 ENVDGVVVVLT 379 (447)
T ss_pred CCCCEEEEEcc
Confidence 88888886654
No 239
>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family. This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone
Probab=65.76 E-value=17 Score=31.25 Aligned_cols=35 Identities=29% Similarity=0.303 Sum_probs=31.4
Q ss_pred CCCCeEEEecCCCcccHHHHHHhhhCCCEEEEecC
Q psy7981 168 IAGTNAVVLGRSKIVGTPAAELLKWKHATVTVCHS 202 (216)
Q Consensus 168 l~Gk~vvViGrS~~VG~Pla~lL~~~~ATVtichs 202 (216)
..|.+++|.|.+..+|..++.++...|++|+++.+
T Consensus 165 ~~~~~vlI~g~~~~iG~~~~~~~~~~g~~v~~~~~ 199 (342)
T cd08266 165 RPGETVLVHGAGSGVGSAAIQIAKLFGATVIATAG 199 (342)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeC
Confidence 47899999999999999999999999999887643
No 240
>cd08253 zeta_crystallin Zeta-crystallin with NADP-dependent quinone reductase activity (QOR). Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts
Probab=65.65 E-value=16 Score=30.98 Aligned_cols=53 Identities=25% Similarity=0.299 Sum_probs=39.2
Q ss_pred ccCCHHHHHHHHHHhCCCCCCCeEEEecCCCcccHHHHHHhhhCCCEEEEecC
Q psy7981 150 IPCTPNGVLELIKRTNVTIAGTNAVVLGRSKIVGTPAAELLKWKHATVTVCHS 202 (216)
Q Consensus 150 ~PcTa~av~~lL~~~~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~ATVtichs 202 (216)
+||....++..+.+..--..|+.++|.|-+.-+|.-++.++..+|++|++.-+
T Consensus 125 ~~~~~~~a~~~l~~~~~~~~g~~vlI~g~~~~~g~~~~~~a~~~g~~v~~~~~ 177 (325)
T cd08253 125 LGIPALTAYRALFHRAGAKAGETVLVHGGSGAVGHAAVQLARWAGARVIATAS 177 (325)
T ss_pred hhhHHHHHHHHHHHHhCCCCCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEeC
Confidence 45444445555544333347999999999999999999999999999877643
No 241
>COG0403 GcvP Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain [Amino acid transport and metabolism]
Probab=65.63 E-value=6.4 Score=37.55 Aligned_cols=66 Identities=20% Similarity=0.265 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHcCcceEEEeCCCCCCHHHHHHHHHHhcCCCCccEEEEeCCCCCCCCCCHHHHhhhcCCCCCcc
Q psy7981 56 NVYIRMKMKAAKEIGIDAQHVKLPRSITEIELLSRLKKLNEDPSVHGIIVQMPLDSDNDINAMLVTDSVSPEKDVD 131 (216)
Q Consensus 56 ~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvqlPL~~P~~id~~~i~~~I~p~KDVD 131 (216)
..|+.--...|+-+||+.+....+ ++.+ +++. .|.++.|+++|+|=+ -++.+..+...++-.|+-.
T Consensus 175 pqt~~Vl~Tra~~~g~~i~~~~~~------d~~~-l~~~-~~~~~~gv~vQyP~~--~G~~~~d~~~l~~~~h~~~ 240 (450)
T COG0403 175 PQTLDVLRTRAEGLGIEIEVVDAD------DLDD-LESA-DDGDVFGVLVQYPNT--FGIVEEDLRALIEAAHSAG 240 (450)
T ss_pred HHHHHHHHhhcccCceEEEEeccc------hhhh-hhhc-cccCeEEEEEecCCC--CCccchhHHHHHHHHhhcC
Confidence 345666788899999999998776 2222 2333 678999999999973 3433333444444344433
No 242
>cd06267 PBP1_LacI_sugar_binding_like Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. In most cases, ligands are monosaccharide including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the domain sugar binding changes the DNA binding activity of the repressor domain.
Probab=65.33 E-value=51 Score=26.79 Aligned_cols=56 Identities=20% Similarity=0.074 Sum_probs=40.6
Q ss_pred CCcchHHHHHHHHHHHHHcCcceEEEeCCCCCCHHHHHHHHHHhcCCCCccEEEEeCCC
Q psy7981 51 GREDSNVYIRMKMKAAKEIGIDAQHVKLPRSITEIELLSRLKKLNEDPSVHGIIVQMPL 109 (216)
Q Consensus 51 ~~~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvqlPL 109 (216)
+++....+.+..+++|++.|+++..+... .+.++..+.++.+-+ ..++||++....
T Consensus 10 ~~~~~~~~~~g~~~~~~~~g~~~~~~~~~--~~~~~~~~~~~~~~~-~~~d~iii~~~~ 65 (264)
T cd06267 10 SNPFFAELLRGIEEAAREAGYSVLLCNSD--EDPEKEREALELLLS-RRVDGIILAPSR 65 (264)
T ss_pred CCHHHHHHHHHHHHHHHHcCCEEEEEcCC--CCHHHHHHHHHHHHH-cCcCEEEEecCC
Confidence 45666677788899999999998876543 345666777777654 379999997554
No 243
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=64.78 E-value=10 Score=35.61 Aligned_cols=128 Identities=20% Similarity=0.162 Sum_probs=75.6
Q ss_pred HHHHHHcCcceEEEeCCCCCCHHHHHHHHHHhcCCCCccEEEEeCCCCCCCCCCHHHHhhhcCCCCCcccCCccchhHhh
Q psy7981 63 MKAAKEIGIDAQHVKLPRSITEIELLSRLKKLNEDPSVHGIIVQMPLDSDNDINAMLVTDSVSPEKDVDGLNTINEGRVA 142 (216)
Q Consensus 63 ~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvqlPL~~P~~id~~~i~~~I~p~KDVDG~~~~n~G~l~ 142 (216)
...|-.++...=....|..+...+++..|.+=|-+....=|.--.|| |. ++..|-|... .+...+..+..
T Consensus 39 ~~rc~~c~~~~c~~~cp~~~~~~~~~~~~~~~~~~~a~~~~~~~~p~--~~------~~g~vc~~~~-~C~~~C~~~~~- 108 (457)
T PRK11749 39 ASRCLQCKDAPCVKACPVSIDIPEFIRLIAEGNLKGAAETILETNPL--PA------VCGRVCPQER-LCEGACVRGKK- 108 (457)
T ss_pred HHHhhCCCCCcccccCCCcCCHHHHHHHHHCCCHHHHHHHHHHhCCc--hh------hhcCcCCCcc-CHHHHhcCCCC-
Confidence 34444555444445667777777777777766555555555566777 64 3444555331 11111111111
Q ss_pred cCCCCCcccCCHHHHHHHHHHhC------CCCCCCeEEEecCCCcccHHHHHHhhhCCCEEEEecCC
Q psy7981 143 IGDMNGFIPCTPNGVLELIKRTN------VTIAGTNAVVLGRSKIVGTPAAELLKWKHATVTVCHSK 203 (216)
Q Consensus 143 ~~~~~~~~PcTa~av~~lL~~~~------i~l~Gk~vvViGrS~~VG~Pla~lL~~~~ATVtichs~ 203 (216)
+ ....++|.-+.+.+.-..++ .+-.+|+|+|||.+.. |...|..|.++|..||+....
T Consensus 109 -~-~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~VvIIGgGpa-Gl~aA~~l~~~g~~V~lie~~ 172 (457)
T PRK11749 109 -G-EPVAIGRLERYITDWAMETGWVLFKRAPKTGKKVAVIGAGPA-GLTAAHRLARKGYDVTIFEAR 172 (457)
T ss_pred -C-CCcchHHHHHHHHHHHHhcCCCCCCCCccCCCcEEEECCCHH-HHHHHHHHHhCCCeEEEEccC
Confidence 1 01345565555544332222 2346899999998755 999999999999999999754
No 244
>cd06303 PBP1_LuxPQ_Quorum_Sensing Periplasmic binding protein (LuxP) of autoinducer-2 (AI-2) receptor LuxPQ from Vibrio harveyi and its close homologs. Periplasmic binding protein (LuxP) of autoinducer-2 (AI-2) receptor LuxPQ from Vibrio harveyi and its close homologs from other bacteria. The members of this group are highly homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea, and that are members of the type I periplasmic binding protein superfamily. The Vibrio harveyi AI-2 receptor consists of two polypeptides, LuxP and LuxQ: LuxP is a periplasmic binding protein that binds AI-2 by clamping it between two domains, LuxQ is an integral membrane protein belonging to the two-component sensor kinase family. Unlike AI-2 bound to the LsrB receptor in Salmonella typhimurium, the Vibrio harveyi AI-2 signaling molecule has an unusual furanosyl borate
Probab=64.73 E-value=24 Score=29.97 Aligned_cols=62 Identities=13% Similarity=0.080 Sum_probs=37.4
Q ss_pred EEEEEeCC--CcchHHHHHHHHHHHHHcCcceEEEeCCCC--CCHHHHHHHHHHhcCCCCccEEEEe
Q psy7981 44 LAIVQVGG--REDSNVYIRMKMKAAKEIGIDAQHVKLPRS--ITEIELLSRLKKLNEDPSVHGIIVQ 106 (216)
Q Consensus 44 LaiI~vg~--~~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~--~~~~el~~~I~~lN~D~~V~GIlvq 106 (216)
+++|.-.. ++-....++...+.|++.|+.+....+..+ .+.+.-.+.|+.+- +.+|+||++.
T Consensus 2 Igvi~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~-~~~vDgiIv~ 67 (280)
T cd06303 2 IAVIYPGQQISDYWVRNIASFTARLEELNIPYELTQFSSRPGIDHRLQSQQLNEAL-QSKPDYLIFT 67 (280)
T ss_pred eeEEecCccHHHHHHHHHHHHHHHHHHcCCcEEEEEeccCcccCHHHHHHHHHHHH-HcCCCEEEEc
Confidence 45555431 233334456777889999999887654322 23344455666654 3479999986
No 245
>cd06289 PBP1_MalI_like Ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. This group includes the ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. They are members of the LacI-GalR family of repressor proteins which are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=64.71 E-value=49 Score=27.29 Aligned_cols=54 Identities=15% Similarity=-0.032 Sum_probs=38.3
Q ss_pred CcchHHHHHHHHHHHHHcCcceEEEeCCCCCCHHHHHHHHHHhcCCCCccEEEEeCC
Q psy7981 52 REDSNVYIRMKMKAAKEIGIDAQHVKLPRSITEIELLSRLKKLNEDPSVHGIIVQMP 108 (216)
Q Consensus 52 ~~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvqlP 108 (216)
++-...+.+...++|++.|.+.... +.....++..+.|+.+.+ ..++||++.-+
T Consensus 11 ~~~~~~~~~g~~~~a~~~g~~~~~~--~~~~~~~~~~~~i~~~~~-~~vdgiii~~~ 64 (268)
T cd06289 11 NPFFAELAAGLEEVLEEAGYTVFLA--NSGEDVERQEQLLSTMLE-HGVAGIILCPA 64 (268)
T ss_pred cchHHHHHHHHHHHHHHcCCeEEEe--cCCCChHHHHHHHHHHHH-cCCCEEEEeCC
Confidence 4555556678889999999877544 333445666777888765 57999999843
No 246
>PF01220 DHquinase_II: Dehydroquinase class II; InterPro: IPR001874 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. Class-II enzymes are homododecameric enzymes of about 17 kDa. They are found in some bacteria such as actinomycetales [, ] and some fungi where they act in a catabolic pathway that allows the use of quinic acid as a carbon source.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 3N8K_J 3N7A_I 3N87_F 3N8N_H 3N86_N 1H0S_A 3N59_J 1H05_A 1H0R_A 2Y71_A ....
Probab=64.64 E-value=23 Score=28.79 Aligned_cols=57 Identities=23% Similarity=0.418 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHcCcceEEEeCCCCCCHHHHHHHHHHhcCCCCccEEEEeCCCCCCCCCC--HHHHhhhc
Q psy7981 58 YIRMKMKAAKEIGIDAQHVKLPRSITEIELLSRLKKLNEDPSVHGIIVQMPLDSDNDIN--AMLVTDSV 124 (216)
Q Consensus 58 Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvqlPL~~P~~id--~~~i~~~I 124 (216)
..+.-.+.|++.|++++.+. +-.|.|+++.|.+.-++ ++||++= |..+. .-.+.+++
T Consensus 30 i~~~~~~~a~~~g~~v~~~Q---SN~EGelid~I~~a~~~--~dgiIIN-----pga~thtS~Ai~DAl 88 (140)
T PF01220_consen 30 IEQKCKETAAELGVEVEFFQ---SNHEGELIDWIHEARDD--VDGIIIN-----PGAYTHTSIAIRDAL 88 (140)
T ss_dssp HHHHHHHHHHHTTEEEEEEE----SSHHHHHHHHHHHTCT--TSEEEEE------GGGGHT-HHHHHHH
T ss_pred HHHHHHHHHHHCCCeEEEEe---cCCHHHHHHHHHHHHhh--CCEEEEc-----cchhccccHHHHHHH
Confidence 35667788899999887764 44689999999999766 9999996 55552 33455555
No 247
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=64.63 E-value=6.4 Score=33.09 Aligned_cols=42 Identities=14% Similarity=0.323 Sum_probs=34.8
Q ss_pred CCCCCeEEEecCCCcccHHHHHHhhhCCCE-EEEecCCCCChHH
Q psy7981 167 TIAGTNAVVLGRSKIVGTPAAELLKWKHAT-VTVCHSKTKNIQD 209 (216)
Q Consensus 167 ~l~Gk~vvViGrS~~VG~Pla~lL~~~~AT-Vtichs~T~~l~~ 209 (216)
.++.++|+|||-+. +|-.++..|...|.. +|+++..+-....
T Consensus 16 ~L~~s~VlviG~gg-lGsevak~L~~~GVg~i~lvD~d~ve~sn 58 (198)
T cd01485 16 KLRSAKVLIIGAGA-LGAEIAKNLVLAGIDSITIVDHRLVSTED 58 (198)
T ss_pred HHhhCcEEEECCCH-HHHHHHHHHHHcCCCEEEEEECCcCChhc
Confidence 46789999999999 899999999998876 9999877654433
No 248
>cd06296 PBP1_CatR_like Ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group includes the ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=64.39 E-value=54 Score=27.20 Aligned_cols=55 Identities=18% Similarity=0.158 Sum_probs=38.2
Q ss_pred CcchHHHHHHHHHHHHHcCcceEEEeCCCCCCHHHHHHHHHHhcCCCCccEEEEeCCC
Q psy7981 52 REDSNVYIRMKMKAAKEIGIDAQHVKLPRSITEIELLSRLKKLNEDPSVHGIIVQMPL 109 (216)
Q Consensus 52 ~~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvqlPL 109 (216)
++-.....+...+.|++.|+++....-..+ ++...+.|+.+.. .++|||++..+.
T Consensus 11 ~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~--~~~~~~~i~~l~~-~~~dgiii~~~~ 65 (270)
T cd06296 11 SPWASEVLRGVEEAAAAAGYDVVLSESGRR--TSPERQWVERLSA-RRTDGVILVTPE 65 (270)
T ss_pred CccHHHHHHHHHHHHHHcCCeEEEecCCCc--hHHHHHHHHHHHH-cCCCEEEEecCC
Confidence 455566678888999999998877654433 3444456666654 469999997665
No 249
>PF02610 Arabinose_Isome: L-arabinose isomerase; InterPro: IPR003762 The Escherichia coli araBAD operon consists of three genes encoding three enzymes that convert L-arabinose to D-xylulose-5 phosphate. L-arabinose isomerase (AraA) 5.3.1.4 from EC catalyses the conversion of L-arabinose to L-ribulose as the first step in the pathway of L-arabinose utilization as a carbon source [].; GO: 0008733 L-arabinose isomerase activity, 0008152 metabolic process; PDB: 4F2D_A 2AJT_C 2HXG_C.
Probab=64.27 E-value=7.9 Score=36.09 Aligned_cols=72 Identities=19% Similarity=0.195 Sum_probs=39.4
Q ss_pred cceEEEeCCCCCCHHHHHHHHHHhcCCCCccEEEEeCCCCCCCCCCHHHHhh---------hcCCCCCcccCCccchhHh
Q psy7981 71 IDAQHVKLPRSITEIELLSRLKKLNEDPSVHGIIVQMPLDSDNDINAMLVTD---------SVSPEKDVDGLNTINEGRV 141 (216)
Q Consensus 71 i~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvqlPL~~P~~id~~~i~~---------~I~p~KDVDG~~~~n~G~l 141 (216)
+.+++..-|--.|.+++.+.+.+.|.|++++||++.+=-|+|+..=- ..++ .+-|.+++| -...+++.+
T Consensus 44 ~p~~vv~k~~~~t~~~i~~~~~~an~~~~c~gvi~wMhTfSpakmwI-~gl~~l~kPllhl~tQ~~~~ip-~~~iDmd~M 121 (359)
T PF02610_consen 44 LPVKVVFKPVVTTPEEITRVCKEANADEDCDGVITWMHTFSPAKMWI-PGLQRLQKPLLHLHTQPNRAIP-WDTIDMDFM 121 (359)
T ss_dssp -SSEEEE---B-SHHHHHHHHHHHHH-TTEEEEEEEESS---THHHH-HHHHH--S-EEEEE--SSSS---TTT--HHHH
T ss_pred CceEEEecCccCCHHHHHHHHHHhhccCCccEEeehhhhhccHHHHH-HHHHHhCCCeEEeecccccCCC-cccCCHHHH
Confidence 45555555666788999999999999999999999998888775421 1122 245677776 333455544
Q ss_pred hcC
Q psy7981 142 AIG 144 (216)
Q Consensus 142 ~~~ 144 (216)
..+
T Consensus 122 nlN 124 (359)
T PF02610_consen 122 NLN 124 (359)
T ss_dssp HSS
T ss_pred HHh
Confidence 443
No 250
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=64.11 E-value=14 Score=34.23 Aligned_cols=45 Identities=16% Similarity=0.213 Sum_probs=34.9
Q ss_pred CCCeEEEecCCCcccHHHHHHhhhCCCEEEEecCCCC-ChHHHHhc
Q psy7981 169 AGTNAVVLGRSKIVGTPAAELLKWKHATVTVCHSKTK-NIQDVVKS 213 (216)
Q Consensus 169 ~Gk~vvViGrS~~VG~Pla~lL~~~~ATVtichs~T~-~l~~~~k~ 213 (216)
..++|+|||-....|.+++..|.++|.+|+++..... +..+.+++
T Consensus 97 ~~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~~~~~~~~~~~ 142 (374)
T PRK11199 97 DLRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDDWDRAEDILAD 142 (374)
T ss_pred ccceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCcchhHHHHHhc
Confidence 3478999997788899999999999999999986442 34444433
No 251
>cd06282 PBP1_GntR_like_2 Ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding
Probab=64.10 E-value=45 Score=27.50 Aligned_cols=52 Identities=12% Similarity=0.072 Sum_probs=38.6
Q ss_pred CcchHHHHHHHHHHHHHcCcceEEEeCCCCCCHHHHHHHHHHhcCCCCccEEEEe
Q psy7981 52 REDSNVYIRMKMKAAKEIGIDAQHVKLPRSITEIELLSRLKKLNEDPSVHGIIVQ 106 (216)
Q Consensus 52 ~~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq 106 (216)
++-.....+...++|++.|+.+...... -++++..+.++.+.. ..|+||++.
T Consensus 11 ~~~~~~~~~~i~~~~~~~g~~~~~~~~~--~~~~~~~~~~~~l~~-~~vdgiii~ 62 (266)
T cd06282 11 NPVFAECVQGIQEEARAAGYSLLLATTD--YDAEREADAVETLLR-QRVDGLILT 62 (266)
T ss_pred cchHHHHHHHHHHHHHHCCCEEEEeeCC--CCHHHHHHHHHHHHh-cCCCEEEEe
Confidence 4555566788889999999999886543 244566677778776 479999985
No 252
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=63.95 E-value=19 Score=31.58 Aligned_cols=53 Identities=13% Similarity=0.050 Sum_probs=36.8
Q ss_pred ccCCHHHHHHHHHHhCCCCCCCeEEEecCCCcccHHHHHHhhhCCCEEEEecC
Q psy7981 150 IPCTPNGVLELIKRTNVTIAGTNAVVLGRSKIVGTPAAELLKWKHATVTVCHS 202 (216)
Q Consensus 150 ~PcTa~av~~lL~~~~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~ATVtichs 202 (216)
+||.....+..|.+..---.|.+|+|.|.+.-||.-+..+...+|++|+...+
T Consensus 119 l~~~~~TA~~~l~~~~~~~~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~ 171 (325)
T TIGR02825 119 VGMPGLTAYFGLLEICGVKGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAG 171 (325)
T ss_pred cccHHHHHHHHHHHHhCCCCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeC
Confidence 34433333333333322246999999999999999999999999999876543
No 253
>cd05288 PGDH Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
Probab=63.89 E-value=18 Score=31.29 Aligned_cols=53 Identities=17% Similarity=0.083 Sum_probs=40.1
Q ss_pred ccCCHHHHHHHHHHhCCCCCCCeEEEecCCCcccHHHHHHhhhCCCEEEEecC
Q psy7981 150 IPCTPNGVLELIKRTNVTIAGTNAVVLGRSKIVGTPAAELLKWKHATVTVCHS 202 (216)
Q Consensus 150 ~PcTa~av~~lL~~~~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~ATVtichs 202 (216)
+||.....+..+.+.+---.|.+|+|.|.+..+|.-++.++.+.|+.|+.+-+
T Consensus 126 l~~~~~ta~~~l~~~~~~~~~~~vlI~g~~g~ig~~~~~~a~~~G~~vi~~~~ 178 (329)
T cd05288 126 LGMTGLTAYFGLTEIGKPKPGETVVVSAAAGAVGSVVGQIAKLLGARVVGIAG 178 (329)
T ss_pred cccHHHHHHHHHHhccCCCCCCEEEEecCcchHHHHHHHHHHHcCCEEEEEeC
Confidence 45555555555544443457899999999999999999999999999877754
No 254
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=63.84 E-value=8.2 Score=34.90 Aligned_cols=38 Identities=24% Similarity=0.318 Sum_probs=31.7
Q ss_pred CCCCCeEEEecCCCcccHHHHHHhhhCCCEEEEecCCCC
Q psy7981 167 TIAGTNAVVLGRSKIVGTPAAELLKWKHATVTVCHSKTK 205 (216)
Q Consensus 167 ~l~Gk~vvViGrS~~VG~Pla~lL~~~~ATVtichs~T~ 205 (216)
.++||+|+|||-++. .-=-|++|.+-...||++|++..
T Consensus 140 ~~~~k~v~ViGgG~s-Ave~Al~L~~~a~~Vtlv~r~~~ 177 (305)
T COG0492 140 FFKGKDVVVIGGGDS-AVEEALYLSKIAKKVTLVHRRDE 177 (305)
T ss_pred cccCCeEEEEcCCHH-HHHHHHHHHHhcCeEEEEecCcc
Confidence 578999999999887 55667888888888999999864
No 255
>PRK12861 malic enzyme; Reviewed
Probab=63.77 E-value=21 Score=36.53 Aligned_cols=128 Identities=13% Similarity=0.120 Sum_probs=87.0
Q ss_pred HHHHHHHHH-cCcceEEEeCCCCCCHHHHHHHHHHhcCCCCccEEEEeCCCCCCCCCCHHHHhhhcCCCCCcccCCccch
Q psy7981 60 RMKMKAAKE-IGIDAQHVKLPRSITEIELLSRLKKLNEDPSVHGIIVQMPLDSDNDINAMLVTDSVSPEKDVDGLNTINE 138 (216)
Q Consensus 60 ~~k~k~a~~-~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvqlPL~~P~~id~~~i~~~I~p~KDVDG~~~~n~ 138 (216)
..|.-.... .||++..+.... .+.+|+++.++.+..- --| +|+==| +.-+-.+|++....+=|+..||.-.
T Consensus 94 eGK~~L~~~~agid~~di~~~~-~dpd~~v~~v~a~~~~--fg~--i~lED~--~~p~~f~il~~~~~~~~ipvf~DD~- 165 (764)
T PRK12861 94 EGKAVLFKKFAGIDVFDIEINE-TDPDKLVDIIAGLEPT--FGG--INLEDI--KAPECFTVERKLRERMKIPVFHDDQ- 165 (764)
T ss_pred HHHHHHHhhccCCCccccccCC-CCHHHHHHHHHHHHhh--cCC--ceeeec--cCchHHHHHHHHHhcCCCCeecccc-
Confidence 344444443 468877777765 5678999988887432 333 221110 1122344555554444677777422
Q ss_pred hHhhcCCCCCcccCCHHHHHHHHHHhCCCCCCCeEEEecCCCcccHHHHHHhhhCCC---EEEEecCCC
Q psy7981 139 GRVAIGDMNGFIPCTPNGVLELIKRTNVTIAGTNAVVLGRSKIVGTPAAELLKWKHA---TVTVCHSKT 204 (216)
Q Consensus 139 G~l~~~~~~~~~PcTa~av~~lL~~~~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~A---TVtichs~T 204 (216)
++-.-.|..|++.-|+-.|-+++.-++|+.|.+.- |.-++.||...|. .+++|.|+-
T Consensus 166 --------qGTa~v~lA~llnal~~~gk~l~d~~iv~~GAGaA-g~~ia~~l~~~G~~~~~i~~~D~~G 225 (764)
T PRK12861 166 --------HGTAITVSAAFINGLKVVGKSIKEVKVVTSGAGAA-ALACLDLLVDLGLPVENIWVTDIEG 225 (764)
T ss_pred --------chHHHHHHHHHHHHHHHhCCChhHcEEEEECHhHH-HHHHHHHHHHcCCChhhEEEEcCCC
Confidence 24445577899999999999999999999999877 8999999999998 589998764
No 256
>PRK13656 trans-2-enoyl-CoA reductase; Provisional
Probab=63.75 E-value=18 Score=34.14 Aligned_cols=36 Identities=17% Similarity=0.082 Sum_probs=30.6
Q ss_pred CCCCCCeEEEecCCCcccHH--HHHHhhhCCCEEEEecC
Q psy7981 166 VTIAGTNAVVLGRSKIVGTP--AAELLKWKHATVTVCHS 202 (216)
Q Consensus 166 i~l~Gk~vvViGrS~~VG~P--la~lL~~~~ATVtichs 202 (216)
+.--||+++|+|-|.=.|.. ++..| ..||.|.+++.
T Consensus 37 ~~~ggK~aLVTGaSsGIGlA~~IA~al-~~GA~Vi~v~~ 74 (398)
T PRK13656 37 IANGPKKVLVIGASSGYGLASRIAAAF-GAGADTLGVFF 74 (398)
T ss_pred cCCCCCEEEEECCCchHhHHHHHHHHH-HcCCeEEEEec
Confidence 33568999999999999999 88899 99998777763
No 257
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=63.75 E-value=18 Score=32.20 Aligned_cols=53 Identities=28% Similarity=0.275 Sum_probs=40.6
Q ss_pred cccCCHHHHHHHHHHhCCCCCCCeEEEecCCCcccHHHHHHhhhCCC-EEEEecC
Q psy7981 149 FIPCTPNGVLELIKRTNVTIAGTNAVVLGRSKIVGTPAAELLKWKHA-TVTVCHS 202 (216)
Q Consensus 149 ~~PcTa~av~~lL~~~~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~A-TVtichs 202 (216)
.+||...-.+..+.+.+..-.|.+|+|.| +..||.-+..++...|+ +|++..+
T Consensus 157 ~~~~~~~ta~~al~~~~~~~~g~~vlI~g-~g~vG~~~~~lak~~G~~~v~~~~~ 210 (361)
T cd08231 157 PANCALATVLAALDRAGPVGAGDTVVVQG-AGPLGLYAVAAAKLAGARRVIVIDG 210 (361)
T ss_pred HhcCHHHHHHHHHHhccCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCeEEEEcC
Confidence 44565555566666666555899999999 67999999999999999 8877754
No 258
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=63.67 E-value=39 Score=27.90 Aligned_cols=58 Identities=17% Similarity=0.188 Sum_probs=45.0
Q ss_pred EEeCCCcchHHHHHHHHHHHHHcCcceEEEeCCCCCCHHHHHHHHHHhcCCCCccEEEEe
Q psy7981 47 VQVGGREDSNVYIRMKMKAAKEIGIDAQHVKLPRSITEIELLSRLKKLNEDPSVHGIIVQ 106 (216)
Q Consensus 47 I~vg~~~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq 106 (216)
|..|. ..+.-+.+...+.++++||+++.......-+.+++.+.++++.++ .++-||.-
T Consensus 3 IimGS-~SD~~~~~~a~~~L~~~gi~~dv~V~SaHRtp~~~~~~~~~a~~~-g~~viIa~ 60 (156)
T TIGR01162 3 IIMGS-DSDLPTMKKAADILEEFGIPYELRVVSAHRTPELMLEYAKEAEER-GIKVIIAG 60 (156)
T ss_pred EEECc-HhhHHHHHHHHHHHHHcCCCeEEEEECcccCHHHHHHHHHHHHHC-CCeEEEEe
Confidence 45563 345556777788889999999999999999999999999998764 34555553
No 259
>cd06325 PBP1_ABC_uncharacterized_transporter Type I periplasmic ligand-binding domain of uncharacterized ABC-type transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This group includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); its ligand specificity has not been determined experimentally.
Probab=63.36 E-value=41 Score=28.14 Aligned_cols=62 Identities=15% Similarity=0.054 Sum_probs=43.1
Q ss_pred EEEEEeCCCcchHHHHHHHHHHHHHcCc----ceEEEeCCCCCCHHHHHHHHHHhcCCCCccEEEEe
Q psy7981 44 LAIVQVGGREDSNVYIRMKMKAAKEIGI----DAQHVKLPRSITEIELLSRLKKLNEDPSVHGIIVQ 106 (216)
Q Consensus 44 LaiI~vg~~~as~~Yv~~k~k~a~~~Gi----~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq 106 (216)
++++..-+++--..+++...+.+++.|- +++....+...++++-...++++-.+ .|+||++.
T Consensus 2 igv~~~~~~~~~~~~~~gi~~~~~~~g~~~g~~v~l~~~~~~~~~~~~~~~~~~l~~~-~vd~iI~~ 67 (281)
T cd06325 2 VGILQLVEHPALDAARKGFKDGLKEAGYKEGKNVKIDYQNAQGDQSNLPTIARKFVAD-KPDLIVAI 67 (281)
T ss_pred eEEecCCCCcchHHHHHHHHHHHHHhCccCCceEEEEEecCCCCHHHHHHHHHHHHhc-CCCEEEEc
Confidence 4455555566777778889999999885 34444444444566667788888654 89999994
No 260
>PRK10936 TMAO reductase system periplasmic protein TorT; Provisional
Probab=63.28 E-value=39 Score=30.12 Aligned_cols=65 Identities=11% Similarity=0.024 Sum_probs=43.9
Q ss_pred eEEEEEeC-CCcchHHHHHHHHHHHHHcCcceEEEeCCCCCCHHHHHHHHHHhcCCCCccEEEEeCCC
Q psy7981 43 GLAIVQVG-GREDSNVYIRMKMKAAKEIGIDAQHVKLPRSITEIELLSRLKKLNEDPSVHGIIVQMPL 109 (216)
Q Consensus 43 ~LaiI~vg-~~~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvqlPL 109 (216)
.+++|.-. +++--....+...+.|++.|.++.....+.+.+.++..+.++.+-. ..|+||++. |.
T Consensus 48 ~Igvv~p~~~~~f~~~~~~gi~~aa~~~G~~l~i~~~~~~~~~~~q~~~i~~l~~-~~vdgIIl~-~~ 113 (343)
T PRK10936 48 KLCALYPHLKDSYWLSVNYGMVEEAKRLGVDLKVLEAGGYYNLAKQQQQLEQCVA-WGADAILLG-AV 113 (343)
T ss_pred EEEEEecCCCchHHHHHHHHHHHHHHHhCCEEEEEcCCCCCCHHHHHHHHHHHHH-hCCCEEEEe-CC
Confidence 56666533 2444455567889999999999888765433445556677777654 469999985 55
No 261
>COG0011 Uncharacterized conserved protein [Function unknown]
Probab=63.25 E-value=20 Score=27.48 Aligned_cols=55 Identities=24% Similarity=0.320 Sum_probs=42.8
Q ss_pred eEEEEEeCCCcch-HHHHHHHHHHHHHcCcceEEEeCCCCC--CHHHHHHHHHHhcCC
Q psy7981 43 GLAIVQVGGREDS-NVYIRMKMKAAKEIGIDAQHVKLPRSI--TEIELLSRLKKLNED 97 (216)
Q Consensus 43 ~LaiI~vg~~~as-~~Yv~~k~k~a~~~Gi~~~~~~l~~~~--~~~el~~~I~~lN~D 97 (216)
-+.++=+|.+..| ..|+..-++.-++.|+++++-.+--.+ +-+|+++.|++..+-
T Consensus 6 ~~sviP~gt~~~svs~yVa~~i~~lk~~glky~~~pm~T~iEg~~del~~~ik~~~Ea 63 (100)
T COG0011 6 ELSVIPLGTGGPSVSKYVAEAIEILKESGLKYQLGPMGTVIEGELDELMEAVKEAHEA 63 (100)
T ss_pred EEEEEecCCCCCCHHHHHHHHHHHHHHcCCceeecCcceEEEecHHHHHHHHHHHHHH
Confidence 4677888966665 999999999999999999887554222 678999998887653
No 262
>cd06278 PBP1_LacI_like_2 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=63.19 E-value=84 Score=25.83 Aligned_cols=53 Identities=17% Similarity=0.161 Sum_probs=35.7
Q ss_pred CcchHHHHHHHHHHHHHcCcceEEEeCCCCCCHHHHHHHHHHhcCCCCccEEEEeCC
Q psy7981 52 REDSNVYIRMKMKAAKEIGIDAQHVKLPRSITEIELLSRLKKLNEDPSVHGIIVQMP 108 (216)
Q Consensus 52 ~~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvqlP 108 (216)
++-.....+...+.|++.|+.+..+..+.+. +..+.++.+- ...|+||++...
T Consensus 11 ~~~~~~~~~~i~~~~~~~g~~~~~~~~~~~~---~~~~~i~~~~-~~~vdgiii~~~ 63 (266)
T cd06278 11 NPFYSELLEALSRALQARGYQPLLINTDDDE---DLDAALRQLL-QYRVDGVIVTSG 63 (266)
T ss_pred CchHHHHHHHHHHHHHHCCCeEEEEcCCCCH---HHHHHHHHHH-HcCCCEEEEecC
Confidence 3444555677789999999999877655433 3445555554 357999999643
No 263
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=63.10 E-value=7.1 Score=39.26 Aligned_cols=37 Identities=22% Similarity=0.257 Sum_probs=32.5
Q ss_pred CCCCeEEEecCCCcccHHHHHHhhhCCCE-EEEecCCCC
Q psy7981 168 IAGTNAVVLGRSKIVGTPAAELLKWKHAT-VTVCHSKTK 205 (216)
Q Consensus 168 l~Gk~vvViGrS~~VG~Pla~lL~~~~AT-Vtichs~T~ 205 (216)
..||+|+|||-++ +|.-.|..+.+.|+. ||+.+..+.
T Consensus 568 ~~gk~VvVIGgG~-~a~d~A~~~~r~Ga~~Vtlv~r~~~ 605 (752)
T PRK12778 568 KFGKKVAVVGGGN-TAMDSARTAKRLGAERVTIVYRRSE 605 (752)
T ss_pred cCCCcEEEECCcH-HHHHHHHHHHHcCCCeEEEeeecCc
Confidence 4799999999886 599999999999998 999987753
No 264
>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=63.03 E-value=19 Score=30.70 Aligned_cols=53 Identities=25% Similarity=0.252 Sum_probs=40.3
Q ss_pred cccCCHHHHHHHHHHhCCCCCCCeEEEecCCCcccHHHHHHhhhCCCEEEEecC
Q psy7981 149 FIPCTPNGVLELIKRTNVTIAGTNAVVLGRSKIVGTPAAELLKWKHATVTVCHS 202 (216)
Q Consensus 149 ~~PcTa~av~~lL~~~~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~ATVtichs 202 (216)
.+||.....+..+...+.. .|..|+|.|-+.-+|..+..+....|+.|..+.+
T Consensus 113 ~~~~~~~ta~~~~~~~~~~-~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~ 165 (305)
T cd08270 113 TLPVAGVTALRALRRGGPL-LGRRVLVTGASGGVGRFAVQLAALAGAHVVAVVG 165 (305)
T ss_pred HhHhHHHHHHHHHHHhCCC-CCCEEEEECCCcHHHHHHHHHHHHcCCEEEEEeC
Confidence 3455444444455555543 5999999999999999999999999999888754
No 265
>PLN02166 dTDP-glucose 4,6-dehydratase
Probab=63.02 E-value=10 Score=35.78 Aligned_cols=39 Identities=21% Similarity=0.179 Sum_probs=33.9
Q ss_pred CCCCCCCeEEEecCCCcccHHHHHHhhhCCCEEEEecCC
Q psy7981 165 NVTIAGTNAVVLGRSKIVGTPAAELLKWKHATVTVCHSK 203 (216)
Q Consensus 165 ~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~ATVtichs~ 203 (216)
|+.=++++|+|.|-+..||.-|...|+++|..|+.....
T Consensus 115 ~~~~~~mkILVTGatGFIGs~Lv~~Ll~~G~~V~~ldr~ 153 (436)
T PLN02166 115 GIGRKRLRIVVTGGAGFVGSHLVDKLIGRGDEVIVIDNF 153 (436)
T ss_pred ccccCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCC
Confidence 344467899999999999999999999999999987643
No 266
>cd06305 PBP1_methylthioribose_binding_like Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.
Probab=62.55 E-value=44 Score=27.80 Aligned_cols=55 Identities=15% Similarity=0.179 Sum_probs=38.0
Q ss_pred CCcchHHHHHHHHHHHHHcCcceEEEeCCCCCCHHHHHHHHHHhcCCCCccEEEEeCC
Q psy7981 51 GREDSNVYIRMKMKAAKEIGIDAQHVKLPRSITEIELLSRLKKLNEDPSVHGIIVQMP 108 (216)
Q Consensus 51 ~~~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvqlP 108 (216)
+++-....++...++|++.|+.+.... ..-+.+...+.++.+-.. .++||++..+
T Consensus 10 ~~~~~~~~~~gi~~~~~~~g~~~~~~~--~~~~~~~~~~~l~~~~~~-~vdgii~~~~ 64 (273)
T cd06305 10 SGDFDQAYLAGTKAEAEALGGDLRVYD--AGGDDAKQADQIDQAIAQ-KVDAIIIQHG 64 (273)
T ss_pred CCcHHHHHHHHHHHHHHHcCCEEEEEC--CCCCHHHHHHHHHHHHHc-CCCEEEEecC
Confidence 345555667888999999999988754 333445555666665443 7999999654
No 267
>KOG2250|consensus
Probab=62.14 E-value=39 Score=32.90 Aligned_cols=81 Identities=30% Similarity=0.347 Sum_probs=56.1
Q ss_pred HHHhhhcCCCCCcc----cCCccchhHhhc--------------CCC------CCcccCCHHHHHHHH----HHhC--CC
Q psy7981 118 MLVTDSVSPEKDVD----GLNTINEGRVAI--------------GDM------NGFIPCTPNGVLELI----KRTN--VT 167 (216)
Q Consensus 118 ~~i~~~I~p~KDVD----G~~~~n~G~l~~--------------~~~------~~~~PcTa~av~~lL----~~~~--i~ 167 (216)
+++.+.|.|.+||. |+.|--+|.+|- |.. ..-.-+|-+||+... ++.+ -+
T Consensus 169 ~el~~~iGp~~DvPapdig~G~rEm~~if~~Ya~~~g~~~a~vTGK~i~~GGs~~R~~ATG~GV~~y~e~~~~~~~~~~~ 248 (514)
T KOG2250|consen 169 DELIDIIGPDTDVPAPDIGTGPREMGWIFDEYAKTHGHWKAVVTGKPISLGGSHGRYEATGRGVVYYVEAILNDANGKKG 248 (514)
T ss_pred HHHHHHcCCCCCCCccccccCcchhhhhHHHHHHhhcccceeeeCCCCccCCccCcccccchhHHHHHHHHHHhccCCCC
Confidence 45667889999987 455555555553 110 123458999988654 4556 67
Q ss_pred CCCCeEEEecCCCcccHHHHHHhhhCCCEEEE
Q psy7981 168 IAGTNAVVLGRSKIVGTPAAELLKWKHATVTV 199 (216)
Q Consensus 168 l~Gk~vvViGrS~~VG~Pla~lL~~~~ATVti 199 (216)
++||+|+|=|-+ .||.--+.+|...|+.|.-
T Consensus 249 ~kgkr~~i~G~G-nv~~~aa~~l~~~G~kvva 279 (514)
T KOG2250|consen 249 IKGKRVVIQGFG-NVGGHAAKKLSEKGAKVVA 279 (514)
T ss_pred cCceEEEEeCCC-chHHHHHHHHHhcCCEEEE
Confidence 999998776655 5688899999999998653
No 268
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=61.81 E-value=9.8 Score=36.82 Aligned_cols=107 Identities=17% Similarity=0.118 Sum_probs=61.9
Q ss_pred CCCCCCHHHHHHHHHHhcCCCCccEEEEeCCCCCCCCCCHHHHhhhcCCCCCcccCCccchhHhhcCCCCCcccCCHHHH
Q psy7981 78 LPRSITEIELLSRLKKLNEDPSVHGIIVQMPLDSDNDINAMLVTDSVSPEKDVDGLNTINEGRVAIGDMNGFIPCTPNGV 157 (216)
Q Consensus 78 l~~~~~~~el~~~I~~lN~D~~V~GIlvqlPL~~P~~id~~~i~~~I~p~KDVDG~~~~n~G~l~~~~~~~~~PcTa~av 157 (216)
.|..+...+++..|.+=|-+....=|.-..|| |. ++..+-|. .+-...+.+. .-.|++-.++
T Consensus 53 CP~~~~i~~~~~~~~~g~~~~a~~~~~~~np~--~~------~~grvc~~---~ce~~C~r~~-------~~~~v~i~~l 114 (564)
T PRK12771 53 CPAGEDIRGWLALVRGGDYEYAWRRLTKDNPF--PA------VMGRVCYH---PCESGCNRGQ-------VDDAVGINAV 114 (564)
T ss_pred CCCCCcHHHHHHHHHCCCHHHHHHHHHHhCCc--ch------HhhCcCCc---hhHHhccCCC-------CCCCcCHHHH
Confidence 45566666666666655555444445555666 53 23344443 2222222211 1124444443
Q ss_pred HHHHHHh----C------CCCCCCeEEEecCCCcccHHHHHHhhhCCCEEEEecCC
Q psy7981 158 LELIKRT----N------VTIAGTNAVVLGRSKIVGTPAAELLKWKHATVTVCHSK 203 (216)
Q Consensus 158 ~~lL~~~----~------i~l~Gk~vvViGrS~~VG~Pla~lL~~~~ATVtichs~ 203 (216)
-+..-.+ + -.-.|++|+|||.+. .|.-.+..|..+|+.||+....
T Consensus 115 ~r~~~~~~~~~~~~~~~~~~~~g~~V~VIGaGp-aGL~aA~~l~~~G~~V~v~e~~ 169 (564)
T PRK12771 115 ERFLGDYAIANGWKFPAPAPDTGKRVAVIGGGP-AGLSAAYHLRRMGHAVTIFEAG 169 (564)
T ss_pred HHHHHHHHHHcCCCCCCCCCCCCCEEEEECCCH-HHHHHHHHHHHCCCeEEEEecC
Confidence 3322111 1 134799999999996 5999999999999999999753
No 269
>cd06310 PBP1_ABC_sugar_binding_like_2 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=61.49 E-value=43 Score=27.96 Aligned_cols=49 Identities=16% Similarity=0.150 Sum_probs=33.6
Q ss_pred HHHHHHHHHHcCcceEEEeCCCCCCHHHHHHHHHHhcCCCCccEEEEeCCC
Q psy7981 59 IRMKMKAAKEIGIDAQHVKLPRSITEIELLSRLKKLNEDPSVHGIIVQMPL 109 (216)
Q Consensus 59 v~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvqlPL 109 (216)
.+....+|++.|.......-...-+.++..+.++.+... +++||++. |.
T Consensus 18 ~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~~-~vdgvii~-~~ 66 (273)
T cd06310 18 KAGAEAAAKELGVKVTFQGPASETDVAGQVNLLENAIAR-GPDAILLA-PT 66 (273)
T ss_pred HHHHHHHHHHcCCEEEEecCccCCCHHHHHHHHHHHHHh-CCCEEEEc-CC
Confidence 356667899999988877543233556666777776443 79999995 54
No 270
>cd01575 PBP1_GntR Ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. This group represents the ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of GntR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding,
Probab=61.40 E-value=39 Score=27.90 Aligned_cols=54 Identities=9% Similarity=-0.057 Sum_probs=37.3
Q ss_pred CCcchHHHHHHHHHHHHHcCcceEEEeCCCCCCHHHHHHHHHHhcCCCCccEEEEeC
Q psy7981 51 GREDSNVYIRMKMKAAKEIGIDAQHVKLPRSITEIELLSRLKKLNEDPSVHGIIVQM 107 (216)
Q Consensus 51 ~~~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvql 107 (216)
+++.-..+++...++|++.|.++....... +.++..+.++.+. ...||||++.-
T Consensus 10 ~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~--~~~~~~~~~~~l~-~~~vdgiii~~ 63 (268)
T cd01575 10 SNSVFADVLQGISDVLEAAGYQLLLGNTGY--SPEREEELLRTLL-SRRPAGLILTG 63 (268)
T ss_pred cchhHHHHHHHHHHHHHHcCCEEEEecCCC--CchhHHHHHHHHH-HcCCCEEEEeC
Confidence 355556667888999999999887755433 3344555666664 35699999973
No 271
>cd05282 ETR_like 2-enoyl thioester reductase-like. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossman
Probab=61.07 E-value=19 Score=30.90 Aligned_cols=52 Identities=12% Similarity=-0.005 Sum_probs=39.9
Q ss_pred ccCCHHHHHHHHHHhCCCCCCCeEEEecCCCcccHHHHHHhhhCCCEEEEec
Q psy7981 150 IPCTPNGVLELIKRTNVTIAGTNAVVLGRSKIVGTPAAELLKWKHATVTVCH 201 (216)
Q Consensus 150 ~PcTa~av~~lL~~~~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~ATVtich 201 (216)
+||.+...+..+...+.-..|..|+|.|-+..+|.-+..++..+|+.|++.-
T Consensus 119 ~~~~~~ta~~~~~~~~~~~~~~~vlI~g~~~~vg~~~~~~a~~~g~~v~~~~ 170 (323)
T cd05282 119 LYINPLTAWLMLTEYLKLPPGDWVIQNAANSAVGRMLIQLAKLLGFKTINVV 170 (323)
T ss_pred HhccHHHHHHHHHHhccCCCCCEEEEcccccHHHHHHHHHHHHCCCeEEEEe
Confidence 4455555555555555446789999999999999999999999999987653
No 272
>cd06306 PBP1_TorT-like TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. The Tor respiratory system is consists of three proteins (TorC, TorA, and TorD) and is induced in the presence of TMAO. The TMAO control is tightly regulated by three proteins: TorS, TorT, and TorR. Thus, the disruption of any of these proteins can abolish the Tor respiratory induction. TorT shares homology with the sugar-binding domain of the type I periplasmic binding proteins. The members of TorT-like family bind TMAO or related compounds and are predicted to be involved in signal transduction and/or substrate transport.
Probab=60.97 E-value=43 Score=28.25 Aligned_cols=54 Identities=9% Similarity=0.025 Sum_probs=34.8
Q ss_pred CcchHHHHHHHHHHHHHcCcceEEEeCCCCCCHHHHHHHHHHhcCCCCccEEEEe
Q psy7981 52 REDSNVYIRMKMKAAKEIGIDAQHVKLPRSITEIELLSRLKKLNEDPSVHGIIVQ 106 (216)
Q Consensus 52 ~~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq 106 (216)
++--....+...+.|++.|+++.......+.+.++..+.|+.+-. .+++||++.
T Consensus 11 ~~f~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~i~~~~~-~~vdgiI~~ 64 (268)
T cd06306 11 DAYWLSVNYGMVEEAKRLGVSLKLLEAGGYPNLAKQIAQLEDCAA-WGADAILLG 64 (268)
T ss_pred CHHHHHHHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHHH-cCCCEEEEc
Confidence 333344456778899999998877643332344555566666643 379999986
No 273
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=60.86 E-value=7.5 Score=32.83 Aligned_cols=37 Identities=11% Similarity=0.136 Sum_probs=32.7
Q ss_pred CCCCCeEEEecCCCcccHHHHHHhhhCCC-EEEEecCCC
Q psy7981 167 TIAGTNAVVLGRSKIVGTPAAELLKWKHA-TVTVCHSKT 204 (216)
Q Consensus 167 ~l~Gk~vvViGrS~~VG~Pla~lL~~~~A-TVtichs~T 204 (216)
.|+.++|+|||-+. +|.+++..|...|. ++|++....
T Consensus 18 ~L~~~~V~IvG~Gg-lGs~ia~~La~~Gvg~i~lvD~D~ 55 (200)
T TIGR02354 18 KLEQATVAICGLGG-LGSNVAINLARAGIGKLILVDFDV 55 (200)
T ss_pred HHhCCcEEEECcCH-HHHHHHHHHHHcCCCEEEEECCCE
Confidence 46889999999987 59999999999998 799998873
No 274
>PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B ....
Probab=60.65 E-value=27 Score=28.42 Aligned_cols=63 Identities=11% Similarity=0.216 Sum_probs=40.5
Q ss_pred EEEeCCCcchHHHHHHHHHHHHHcCcceEEEeCCCCCCHHHHHHHHHHhcCC-CCccEEEEeCCC
Q psy7981 46 IVQVGGREDSNVYIRMKMKAAKEIGIDAQHVKLPRSITEIELLSRLKKLNED-PSVHGIIVQMPL 109 (216)
Q Consensus 46 iI~vg~~~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D-~~V~GIlvqlPL 109 (216)
+|++|..+......+...+..++.|.++..+..+ -...+++.+.+..+.++ +.|+||+---..
T Consensus 28 ~il~~r~~~~~~~~~~~i~~l~~~g~~v~~~~~D-v~d~~~v~~~~~~~~~~~~~i~gVih~ag~ 91 (181)
T PF08659_consen 28 LILLGRSGAPSAEAEAAIRELESAGARVEYVQCD-VTDPEAVAAALAQLRQRFGPIDGVIHAAGV 91 (181)
T ss_dssp EEEEESSGGGSTTHHHHHHHHHHTT-EEEEEE---TTSHHHHHHHHHTSHTTSS-EEEEEE----
T ss_pred EEEeccCCCccHHHHHHHHHHHhCCCceeeeccC-ccCHHHHHHHHHHHHhccCCcceeeeeeee
Confidence 5566666444444455677777789988887766 45678999999999877 599998865433
No 275
>PF07287 DUF1446: Protein of unknown function (DUF1446); InterPro: IPR010839 This family consists of several bacterial and plant proteins of around 400 residues in length. The function of this family is unknown.
Probab=60.64 E-value=84 Score=29.33 Aligned_cols=69 Identities=13% Similarity=0.100 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcchHHHHHHHHHHHHHcCcceEEEeCCCCCCHHHHHHHHH
Q psy7981 18 VSGDIREGLKERVKKLKERLPDFEPGLAIVQVGGREDSNVYIRMKMKAAKEIGIDAQHVKLPRSITEIELLSRLK 92 (216)
Q Consensus 18 vA~~i~~~ik~~v~~l~~~~~~~~P~LaiI~vg~~~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~ 92 (216)
.+..+.+.++.-+...+++ |+ ++.+=--|-||.. +.+...+.|++.|+.+++-.+..+...+++.+.+.
T Consensus 52 Y~~~~~~~L~~~L~~~~~~--gI--kvI~NaGg~np~~--~a~~v~eia~e~Gl~lkvA~V~gDd~~~~v~~~~~ 120 (362)
T PF07287_consen 52 YAPDFVRDLRPLLPAAAEK--GI--KVITNAGGLNPAG--CADIVREIARELGLSLKVAVVYGDDLKDEVKELLA 120 (362)
T ss_pred chHHHHHHHHHHHHHHHhC--CC--CEEEeCCCCCHHH--HHHHHHHHHHhcCCCeeEEEEECccchHhHHHHHh
Confidence 5666777888888887753 43 3433333445544 88999999999999999888887655555544443
No 276
>cd01830 XynE_like SGNH_hydrolase subfamily, similar to the putative arylesterase/acylhydrolase from the rumen anaerobe Prevotella bryantii XynE. The P. bryantii XynE gene is located in a xylanase gene cluster. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=60.55 E-value=50 Score=27.02 Aligned_cols=40 Identities=15% Similarity=0.133 Sum_probs=27.6
Q ss_pred CceEEEEEeCCCcchH-------------HH---HHHHHHHHHHcCcceEEEeCCC
Q psy7981 41 EPGLAIVQVGGREDSN-------------VY---IRMKMKAAKEIGIDAQHVKLPR 80 (216)
Q Consensus 41 ~P~LaiI~vg~~~as~-------------~Y---v~~k~k~a~~~Gi~~~~~~l~~ 80 (216)
.|.+++|.+|-|.... .| .+...+.|++.|+++....++.
T Consensus 74 ~p~~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~vil~t~~P 129 (204)
T cd01830 74 GVRTVIILEGVNDIGASGTDFAAAPVTAEELIAGYRQLIRRAHARGIKVIGATITP 129 (204)
T ss_pred CCCEEEEecccccccccccccccCCCCHHHHHHHHHHHHHHHHHCCCeEEEecCCC
Confidence 5899999999887432 23 3455667777798887765543
No 277
>cd01536 PBP1_ABC_sugar_binding_like Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. The members of this family function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea. The sugar binding domain is also homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR. Moreover, this periplasmic binding domain, also known as Venus flytrap domain, undergoes transition from an open to a closed conformational state upon the binding of ligands such as lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. This family also includes the periplasmic binding domain of autoinducer-2 (AI-2
Probab=60.52 E-value=50 Score=27.03 Aligned_cols=60 Identities=18% Similarity=0.253 Sum_probs=38.1
Q ss_pred EEEEEeC-CCcchHHHHHHHHHHHHHcCcceEEEeCCCCCCHHHHHHHHHHhcCCCCccEEEEe
Q psy7981 44 LAIVQVG-GREDSNVYIRMKMKAAKEIGIDAQHVKLPRSITEIELLSRLKKLNEDPSVHGIIVQ 106 (216)
Q Consensus 44 LaiI~vg-~~~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq 106 (216)
+++|.-. +++.-....+...++|++.|+++....... +.+...+.++++... +|+||++.
T Consensus 2 ig~i~p~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~~--~~~~~~~~~~~l~~~-~vdgvi~~ 62 (267)
T cd01536 2 IGLVVPSLNNPFWQAMNKGAEAAAKELGVELIVLDAQN--DVSKQIQQIEDLIAQ-GVDGIIIS 62 (267)
T ss_pred EEEEeccccCHHHHHHHHHHHHHHHhcCceEEEECCCC--CHHHHHHHHHHHHHc-CCCEEEEe
Confidence 3444433 233333345666788888999988876654 345555677776555 79999986
No 278
>KOG1210|consensus
Probab=60.43 E-value=14 Score=34.05 Aligned_cols=39 Identities=23% Similarity=0.232 Sum_probs=32.5
Q ss_pred CeEEEecCCCcccHHHHHHhhhCCCEEEEecCCCCChHH
Q psy7981 171 TNAVVLGRSKIVGTPAAELLKWKHATVTVCHSKTKNIQD 209 (216)
Q Consensus 171 k~vvViGrS~~VG~Pla~lL~~~~ATVtichs~T~~l~~ 209 (216)
.|++|.|+|.=.|+-++.-+..+||.||+.-.-.+-+.+
T Consensus 34 ~hi~itggS~glgl~la~e~~~~ga~Vti~ar~~~kl~~ 72 (331)
T KOG1210|consen 34 RHILITGGSSGLGLALALECKREGADVTITARSGKKLLE 72 (331)
T ss_pred ceEEEecCcchhhHHHHHHHHHccCceEEEeccHHHHHH
Confidence 699999999999999999999999999976544343443
No 279
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems. Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem
Probab=60.26 E-value=90 Score=25.20 Aligned_cols=63 Identities=19% Similarity=0.152 Sum_probs=43.5
Q ss_pred EEEEEeC-CCcchHHHHHHHHHHHHHcCcceEEEeCCCCCCHHHHHHHHHHhcCCCCccEEEEeCCC
Q psy7981 44 LAIVQVG-GREDSNVYIRMKMKAAKEIGIDAQHVKLPRSITEIELLSRLKKLNEDPSVHGIIVQMPL 109 (216)
Q Consensus 44 LaiI~vg-~~~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvqlPL 109 (216)
++++.-+ +++-...+.+..++++++.|+++..+.... ++++..+.++++-.. .++||++.-..
T Consensus 2 ig~v~~~~~~~~~~~~~~g~~~~~~~~g~~l~~~~~~~--~~~~~~~~~~~~~~~-~~d~ii~~~~~ 65 (264)
T cd01537 2 IGVLVPDLDNPFFAQVLKGIEEAAKAAGYQVLLANSQN--DAEKQLSALENLIAR-GVDGIIIAPSD 65 (264)
T ss_pred eEEEEcCCCChHHHHHHHHHHHHHHHcCCeEEEEeCCC--CHHHHHHHHHHHHHc-CCCEEEEecCC
Confidence 4555544 355667778888999999999888775543 456666666666443 79999996433
No 280
>cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES.
Probab=60.18 E-value=24 Score=30.44 Aligned_cols=51 Identities=25% Similarity=0.272 Sum_probs=37.2
Q ss_pred ccCCHHHHHHHHHHhCCCCCCCeEEEecCCCcccHHHHHHhhhCCCEEEEec
Q psy7981 150 IPCTPNGVLELIKRTNVTIAGTNAVVLGRSKIVGTPAAELLKWKHATVTVCH 201 (216)
Q Consensus 150 ~PcTa~av~~lL~~~~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~ATVtich 201 (216)
+||.....+..++. .---.|.+++|.|-+..+|.-++.++...|++|+..-
T Consensus 144 ~~~~~~ta~~~l~~-~~~~~~~~vlI~ga~g~vG~~~~~~a~~~g~~v~~~~ 194 (332)
T cd08259 144 AACVVGTAVHALKR-AGVKKGDTVLVTGAGGGVGIHAIQLAKALGARVIAVT 194 (332)
T ss_pred hccHHHHHHHHHHH-hCCCCCCEEEEECCCCHHHHHHHHHHHHcCCeEEEEe
Confidence 34443444444544 2224688999999999999999999999999986654
No 281
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=60.14 E-value=11 Score=35.07 Aligned_cols=35 Identities=20% Similarity=0.178 Sum_probs=30.7
Q ss_pred CCCeEEEecCCCcccHHHHHHhhhCCCEEEEecCCC
Q psy7981 169 AGTNAVVLGRSKIVGTPAAELLKWKHATVTVCHSKT 204 (216)
Q Consensus 169 ~Gk~vvViGrS~~VG~Pla~lL~~~~ATVtichs~T 204 (216)
.+++++||| +..+|--+|..|.+.|..||+.+...
T Consensus 147 ~~~~vvViG-gG~ig~E~A~~l~~~g~~Vtli~~~~ 181 (438)
T PRK13512 147 QVDKALVVG-AGYISLEVLENLYERGLHPTLIHRSD 181 (438)
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHhCCCcEEEEeccc
Confidence 578999999 55779999999999999999998754
No 282
>cd01545 PBP1_SalR Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. The SalR binds to glucose based compound Salicin which is chemically related to aspirin. The ligand-binding of SalR is structurally homologous to the periplasmic sugar-binding domain of ABC-transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand bind
Probab=60.10 E-value=93 Score=25.69 Aligned_cols=52 Identities=13% Similarity=0.056 Sum_probs=34.9
Q ss_pred hHHHHHHHHHHHHHcCcceEEEeCCCCCCHHHHHHHHHHhcCCCCccEEEEeCC
Q psy7981 55 SNVYIRMKMKAAKEIGIDAQHVKLPRSITEIELLSRLKKLNEDPSVHGIIVQMP 108 (216)
Q Consensus 55 s~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvqlP 108 (216)
-....+...++|++.|.++.......+.. +...+.++.+.. ..|+||++..+
T Consensus 14 ~~~~~~gi~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~l~~-~~vdgiii~~~ 65 (270)
T cd01545 14 VSEIQLGALDACRDTGYQLVIEPCDSGSP-DLAERVRALLQR-SRVDGVILTPP 65 (270)
T ss_pred HHHHHHHHHHHHHhCCCeEEEEeCCCCch-HHHHHHHHHHHH-CCCCEEEEeCC
Confidence 34445777889999999998887664432 234445555544 47999999744
No 283
>COG0540 PyrB Aspartate carbamoyltransferase, catalytic chain [Nucleotide transport and metabolism]
Probab=60.00 E-value=1.4e+02 Score=27.42 Aligned_cols=170 Identities=21% Similarity=0.217 Sum_probs=98.5
Q ss_pred hcccHHHHHHHHHHHHHHHHHHHhc--CCCCC-----ceEEEEEeCCCcchHHHHHHHHHHHHHcCcceEEEeCCCCCC-
Q psy7981 12 ILSGTAVSGDIREGLKERVKKLKER--LPDFE-----PGLAIVQVGGREDSNVYIRMKMKAAKEIGIDAQHVKLPRSIT- 83 (216)
Q Consensus 12 il~Gk~vA~~i~~~ik~~v~~l~~~--~~~~~-----P~LaiI~vg~~~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~- 83 (216)
+|+-+.+.++=.+.|-+..+++++. ..+.. -.++.+.+-+.. ---.+=.-+++++|.++....-.++++
T Consensus 10 lis~~dls~~ei~~ll~~A~~~~~~~~~~~~~~~l~gk~v~~lFFEpST---RTr~SFE~A~krLG~~Vv~~~~~~sSs~ 86 (316)
T COG0540 10 LISIEDLSREELELLLDTADEFKAVARAEKKLDLLKGKVVANLFFEPST---RTRLSFETAMKRLGADVVNFSDSESSSK 86 (316)
T ss_pred eechHhCCHHHHHHHHHHHHHHHHhhhccCCcchhcCcEEEEEEecCCC---chhhhHHHHHHHcCCcEEeecCCccccc
Confidence 4555555555445555555555421 00111 144555555332 222333678899999875554443332
Q ss_pred -HHHHHHHHHHhcCCCCccEEEEeCCCCCCCCCCHHHHhhhcCCCCCcccCC-ccchhHhhcCCCCCcccCCHHHHHHH-
Q psy7981 84 -EIELLSRLKKLNEDPSVHGIIVQMPLDSDNDINAMLVTDSVSPEKDVDGLN-TINEGRVAIGDMNGFIPCTPNGVLEL- 160 (216)
Q Consensus 84 -~~el~~~I~~lN~D~~V~GIlvqlPL~~P~~id~~~i~~~I~p~KDVDG~~-~~n~G~l~~~~~~~~~PcTa~av~~l- 160 (216)
-|-|.++|..|++=- +|.|.+-.|..+ . ...+.+.. +.+ -+|. |+...-.| | ++.+++
T Consensus 87 KGEtL~DT~~tl~ayg-~D~iViRH~~eg---a-a~~~a~~~-------~~~pvINa-----GDG~~qHP-T-Q~LLDl~ 147 (316)
T COG0540 87 KGETLADTIRTLSAYG-VDAIVIRHPEEG---A-ARLLAEFS-------GVNPVINA-----GDGSHQHP-T-QALLDLY 147 (316)
T ss_pred ccccHHHHHHHHHhhC-CCEEEEeCcccc---H-HHHHHHhc-------CCCceEEC-----CCCCCCCc-c-HHHHHHH
Confidence 467888888887764 889999999732 2 12222222 222 4564 33124456 3 444444
Q ss_pred --HHHhCCCCCCCeEEEec--CCCcccHHHHHHhhhCCCEEEEecCCC
Q psy7981 161 --IKRTNVTIAGTNAVVLG--RSKIVGTPAAELLKWKHATVTVCHSKT 204 (216)
Q Consensus 161 --L~~~~i~l~Gk~vvViG--rS~~VG~Pla~lL~~~~ATVtichs~T 204 (216)
-+.+|- +.|++|+++| +-.-|=+.+..+|..-||.|..|-=.|
T Consensus 148 TI~~~~G~-~~gl~iaivGDlkhsRva~S~~~~L~~~ga~v~lvsP~~ 194 (316)
T COG0540 148 TIREEFGR-LDGLKIAIVGDLKHSRVAHSNIQALKRFGAEVYLVSPET 194 (316)
T ss_pred HHHHHhCC-cCCcEEEEEccccchHHHHHHHHHHHHcCCEEEEECchH
Confidence 455564 8999999999 333345677788998999999995444
No 284
>cd01822 Lysophospholipase_L1_like Lysophospholipase L1-like subgroup of SGNH-hydrolases. The best characterized member in this family is TesA, an E. coli periplasmic protein with thioesterase, esterase, arylesterase, protease and lysophospholipase activity.
Probab=59.82 E-value=81 Score=24.54 Aligned_cols=93 Identities=24% Similarity=0.384 Sum_probs=51.7
Q ss_pred CCceEEEEEeCCCcc-----hHHHH---HHHHHHHHHcCcceEEEeC--CCCCC---HHHHHHHHHHhcCCCCccEEEEe
Q psy7981 40 FEPGLAIVQVGGRED-----SNVYI---RMKMKAAKEIGIDAQHVKL--PRSIT---EIELLSRLKKLNEDPSVHGIIVQ 106 (216)
Q Consensus 40 ~~P~LaiI~vg~~~a-----s~~Yv---~~k~k~a~~~Gi~~~~~~l--~~~~~---~~el~~~I~~lN~D~~V~GIlvq 106 (216)
.+|.+++|.+|.|.. ...|. +...+.+++.|.+...+.. |.... .+++.+.++++.+..++.=+
T Consensus 63 ~~pd~v~i~~G~ND~~~~~~~~~~~~~l~~li~~~~~~~~~vil~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~--- 139 (177)
T cd01822 63 HKPDLVILELGGNDGLRGIPPDQTRANLRQMIETAQARGAPVLLVGMQAPPNYGPRYTRRFAAIYPELAEEYGVPLV--- 139 (177)
T ss_pred cCCCEEEEeccCcccccCCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCccchHHHHHHHHHHHHHHHHcCCcEe---
Confidence 478999999999863 22343 4444555555888777654 33322 34666677777665554211
Q ss_pred CCCCCCCCCCHHHHhhhcCCC-CCcccCCccchhHhhcC
Q psy7981 107 MPLDSDNDINAMLVTDSVSPE-KDVDGLNTINEGRVAIG 144 (216)
Q Consensus 107 lPL~~P~~id~~~i~~~I~p~-KDVDG~~~~n~G~l~~~ 144 (216)
|+ ..+ .+.. .|. --.||+||.-.|.-...
T Consensus 140 -d~----~~~--~~~~--~~~~~~~DgvHpn~~G~~~~a 169 (177)
T cd01822 140 -PF----FLE--GVAG--DPELMQSDGIHPNAEGQPIIA 169 (177)
T ss_pred -ch----HHh--hhhh--ChhhhCCCCCCcCHHHHHHHH
Confidence 22 000 0000 111 13699999888865543
No 285
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=59.45 E-value=13 Score=36.74 Aligned_cols=38 Identities=18% Similarity=0.171 Sum_probs=33.1
Q ss_pred CCCCeEEEecCCCcccHHHHHHhhhC-CCEEEEecCCCC
Q psy7981 168 IAGTNAVVLGRSKIVGTPAAELLKWK-HATVTVCHSKTK 205 (216)
Q Consensus 168 l~Gk~vvViGrS~~VG~Pla~lL~~~-~ATVtichs~T~ 205 (216)
.++++|+|.|.+..+|.-|+..|+++ |..|+..+..+.
T Consensus 313 ~~~~~VLVTGatGFIGs~Lv~~Ll~~~g~~V~~l~r~~~ 351 (660)
T PRK08125 313 KRRTRVLILGVNGFIGNHLTERLLRDDNYEVYGLDIGSD 351 (660)
T ss_pred hcCCEEEEECCCchHHHHHHHHHHhCCCcEEEEEeCCch
Confidence 36899999999999999999999985 799998876554
No 286
>cd01391 Periplasmic_Binding_Protein_Type_1 Type 1 periplasmic binding fold superfamily. Type 1 periplasmic binding fold superfamily. This model and hierarchy represent the ligand binding domains of the LacI family of transcriptional regulators, periplasmic binding proteins of the ABC-type transport systems, the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases including the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domains of the ionotropic glutamate receptors (iGluRs). In LacI-like transcriptional regulator and the bacterial periplasmic binding proteins the ligands are monosaccharides including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars, with a few exceptions. Periplasmic sugar binding proteins are one of the components of ABC transporters and are involved in the active transport of water-soluble ligands. The LacI family of proteins con
Probab=59.30 E-value=89 Score=24.82 Aligned_cols=64 Identities=17% Similarity=0.129 Sum_probs=27.6
Q ss_pred eEEEEEeCCCcchHHHHHHHHHHHHHcCcceEEEeCCCCCCHHHHHHHHHHhcCCCCccEEEEe
Q psy7981 43 GLAIVQVGGREDSNVYIRMKMKAAKEIGIDAQHVKLPRSITEIELLSRLKKLNEDPSVHGIIVQ 106 (216)
Q Consensus 43 ~LaiI~vg~~~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq 106 (216)
+++++.-..++.+....+.-.+.+++.|++..........+++......+.+++.+++++|++.
T Consensus 126 ~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~ 189 (269)
T cd01391 126 RVALIYGDDGAYGRERLEGFKAALKKAGIEVVAIEYGDLDTEKGFQALLQLLKAAPKPDAIFAC 189 (269)
T ss_pred eEEEEecCCcchhhHHHHHHHHHHHhcCcEEEeccccCCCccccHHHHHHHHhcCCCCCEEEEc
Confidence 4444443222444555555555555665444322222222212333344444444455555553
No 287
>cd06309 PBP1_YtfQ_like Periplasmic binding domain of ABC-type YtfQ-like transport systems. Periplasmic binding domain of ABC-type YtfQ-like transport systems. The YtfQ protein from Escherichia coli is up-regulated under glucose-limited conditions and shares homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their ligand specificity is not determined experimentally.
Probab=59.16 E-value=32 Score=28.88 Aligned_cols=55 Identities=16% Similarity=0.208 Sum_probs=40.6
Q ss_pred CCcchHHHHHHHHHHHHHcCcceEEEeCCCCCCHHHHHHHHHHhcCCCCccEEEEeCCC
Q psy7981 51 GREDSNVYIRMKMKAAKEIGIDAQHVKLPRSITEIELLSRLKKLNEDPSVHGIIVQMPL 109 (216)
Q Consensus 51 ~~~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvqlPL 109 (216)
+++-.....+...++|++.|+++....-.. +.+.-.+.|+.+.. ..++||++. |.
T Consensus 10 ~~~~~~~~~~~~~~~a~~~g~~~~~~~~~~--~~~~~~~~i~~l~~-~~vdgiIi~-~~ 64 (273)
T cd06309 10 ESPWRTAETKSIKDAAEKRGFDLKFADAQQ--KQENQISAIRSFIA-QGVDVIILA-PV 64 (273)
T ss_pred CCHHHHHHHHHHHHHHHhcCCEEEEeCCCC--CHHHHHHHHHHHHH-cCCCEEEEc-CC
Confidence 356667778999999999999998865433 45555677777755 469999995 54
No 288
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=58.81 E-value=18 Score=31.79 Aligned_cols=52 Identities=21% Similarity=0.265 Sum_probs=38.0
Q ss_pred cccCCHHHHHHHHHHhCCCCCCCeEEEecCCCcccHHHHHHhhhCCCE-EEEecC
Q psy7981 149 FIPCTPNGVLELIKRTNVTIAGTNAVVLGRSKIVGTPAAELLKWKHAT-VTVCHS 202 (216)
Q Consensus 149 ~~PcTa~av~~lL~~~~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~AT-Vtichs 202 (216)
.+||.....+..++..++. .|.+|+|.|- ..||.-...++...|+. |++..+
T Consensus 144 ~l~~~~~ta~~~l~~~~~~-~g~~vlV~G~-G~vG~~~~~~ak~~G~~~vi~~~~ 196 (339)
T cd08239 144 LLLCGIGTAYHALRRVGVS-GRDTVLVVGA-GPVGLGALMLARALGAEDVIGVDP 196 (339)
T ss_pred hhcchHHHHHHHHHhcCCC-CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECC
Confidence 4555544455555555543 5999999996 58999999999999999 777644
No 289
>cd06316 PBP1_ABC_sugar_binding_like_7 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=58.70 E-value=72 Score=27.18 Aligned_cols=54 Identities=15% Similarity=0.159 Sum_probs=35.6
Q ss_pred cchHHHHHHHHHHHHHcCcceEEEeCCCCCCHHHHHHHHHHhcCCCCccEEEEeCCC
Q psy7981 53 EDSNVYIRMKMKAAKEIGIDAQHVKLPRSITEIELLSRLKKLNEDPSVHGIIVQMPL 109 (216)
Q Consensus 53 ~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvqlPL 109 (216)
+-.....+...+.|++.|+++... ++.+.+++...+.++.+-. .+++||++. |.
T Consensus 12 ~~~~~~~~gi~~~a~~~g~~~~~~-~~~~~~~~~~~~~l~~~~~-~~~dgiii~-~~ 65 (294)
T cd06316 12 DWSNAQVRGAKDEFAKLGIEVVAT-TDAQFDPAKQVADIETTIS-QKPDIIISI-PV 65 (294)
T ss_pred hHHHHHHHHHHHHHHHcCCEEEEe-cCCCCCHHHHHHHHHHHHH-hCCCEEEEc-CC
Confidence 333445667789999999988643 2344455666666666543 459999985 65
No 290
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=58.63 E-value=20 Score=33.02 Aligned_cols=35 Identities=29% Similarity=0.403 Sum_probs=30.1
Q ss_pred CCCeEEEecCCCcccHHHHHHhhhCCCEEEEecCCC
Q psy7981 169 AGTNAVVLGRSKIVGTPAAELLKWKHATVTVCHSKT 204 (216)
Q Consensus 169 ~Gk~vvViGrS~~VG~Pla~lL~~~~ATVtichs~T 204 (216)
.+++|+|||.+. +|--+|..|.+.|..||+++...
T Consensus 136 ~~~~vvViGgG~-~g~e~A~~l~~~g~~Vtli~~~~ 170 (427)
T TIGR03385 136 KVENVVIIGGGY-IGIEMAEALRERGKNVTLIHRSE 170 (427)
T ss_pred CCCeEEEECCCH-HHHHHHHHHHhCCCcEEEEECCc
Confidence 579999999775 59999999999999999987654
No 291
>PLN02331 phosphoribosylglycinamide formyltransferase
Probab=58.56 E-value=60 Score=27.72 Aligned_cols=51 Identities=22% Similarity=0.217 Sum_probs=35.5
Q ss_pred ceEEEEEeCCCcchHHHHHHHHHHHHHcCcceEEEeCC----CCCCHHHHHHHHHHhcCC
Q psy7981 42 PGLAIVQVGGREDSNVYIRMKMKAAKEIGIDAQHVKLP----RSITEIELLSRLKKLNED 97 (216)
Q Consensus 42 P~LaiI~vg~~~as~~Yv~~k~k~a~~~Gi~~~~~~l~----~~~~~~el~~~I~~lN~D 97 (216)
+.=.++.+++++.... .+.|++.||.+..+... .+..++++++.+++++-|
T Consensus 26 ~~~i~~visn~~~~~~-----~~~A~~~gIp~~~~~~~~~~~~~~~~~~~~~~l~~~~~D 80 (207)
T PLN02331 26 NGDVVVVVTNKPGCGG-----AEYARENGIPVLVYPKTKGEPDGLSPDELVDALRGAGVD 80 (207)
T ss_pred CeEEEEEEEeCCCChH-----HHHHHHhCCCEEEeccccCCCcccchHHHHHHHHhcCCC
Confidence 4445555666665544 67899999999765442 334578899999998666
No 292
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=58.26 E-value=21 Score=37.20 Aligned_cols=50 Identities=18% Similarity=0.155 Sum_probs=39.1
Q ss_pred CHHHHHHHHHHhCCCCCCCeEEEecCCCcccHHHHHHhhhCCC-EEEEecCCC
Q psy7981 153 TPNGVLELIKRTNVTIAGTNAVVLGRSKIVGTPAAELLKWKHA-TVTVCHSKT 204 (216)
Q Consensus 153 Ta~av~~lL~~~~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~A-TVtichs~T 204 (216)
|+.++..+++.|++ ..|++|+|||.+.+ |--+|..|.+.|+ .|++++...
T Consensus 301 ~~~~~~~~l~~~~~-~~gk~VvViG~G~~-g~e~A~~L~~~G~~vV~vv~~~~ 351 (985)
T TIGR01372 301 LAGAARTYLNRYGV-APGKRIVVATNNDS-AYRAAADLLAAGIAVVAIIDARA 351 (985)
T ss_pred EchHHHHHHHhhCc-CCCCeEEEECCCHH-HHHHHHHHHHcCCceEEEEccCc
Confidence 45566677777664 47999999998775 9999999999996 578887653
No 293
>cd01832 SGNH_hydrolase_like_1 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid. Myxobacterial members of this subfamily have been reported to be involved in adventurous gliding motility.
Probab=58.15 E-value=91 Score=24.57 Aligned_cols=112 Identities=13% Similarity=0.183 Sum_probs=61.1
Q ss_pred cccHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcchH------HHH---HHHHHHHHHcCcceEEEeCCCC-C
Q psy7981 13 LSGTAVSGDIREGLKERVKKLKERLPDFEPGLAIVQVGGREDSN------VYI---RMKMKAAKEIGIDAQHVKLPRS-I 82 (216)
Q Consensus 13 l~Gk~vA~~i~~~ik~~v~~l~~~~~~~~P~LaiI~vg~~~as~------~Yv---~~k~k~a~~~Gi~~~~~~l~~~-~ 82 (216)
+.|....+-+...++.. + ..+|.+++|.+|-|.... .|. +.-.+....-+..+..+..|.. .
T Consensus 47 ~~G~~~~~~~~~~~~~~---~-----~~~~d~vii~~G~ND~~~~~~~~~~~~~~~~~~i~~i~~~~~~vil~~~~~~~~ 118 (185)
T cd01832 47 VRGRRTAQILAEQLPAA---L-----ALRPDLVTLLAGGNDILRPGTDPDTYRADLEEAVRRLRAAGARVVVFTIPDPAV 118 (185)
T ss_pred CCcchHHHHHHHHHHHH---H-----hcCCCEEEEeccccccccCCCCHHHHHHHHHHHHHHHHhCCCEEEEecCCCccc
Confidence 56666554333333322 1 247899999999886532 222 3333333455777777766543 1
Q ss_pred -C---------HHHHHHHHHHhcCCCCccEEEEeCCCCCCCCCCHHHHhhhcCCCCCcccCCccchhHhhc
Q psy7981 83 -T---------EIELLSRLKKLNEDPSVHGIIVQMPLDSDNDINAMLVTDSVSPEKDVDGLNTINEGRVAI 143 (216)
Q Consensus 83 -~---------~~el~~~I~~lN~D~~V~GIlvqlPL~~P~~id~~~i~~~I~p~KDVDG~~~~n~G~l~~ 143 (216)
+ .+++-+.++++-+..+|.-+=+..++ . ..+. .. . =-||+||...|....
T Consensus 119 ~~~~~~~~~~~~~~~n~~l~~~a~~~~v~~vd~~~~~--~-~~~~-~~---~----~~DgiHpn~~G~~~~ 178 (185)
T cd01832 119 LEPFRRRVRARLAAYNAVIRAVAARYGAVHVDLWEHP--E-FADP-RL---W----ASDRLHPSAAGHARL 178 (185)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHcCCEEEecccCc--c-cCCc-cc---c----ccCCCCCChhHHHHH
Confidence 1 14566667777666666655554443 1 1110 00 1 139999988876554
No 294
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=58.07 E-value=9.7 Score=32.00 Aligned_cols=42 Identities=17% Similarity=0.288 Sum_probs=34.9
Q ss_pred CCCCCeEEEecCCCcccHHHHHHhhhCCC-EEEEecCCCCChHH
Q psy7981 167 TIAGTNAVVLGRSKIVGTPAAELLKWKHA-TVTVCHSKTKNIQD 209 (216)
Q Consensus 167 ~l~Gk~vvViGrS~~VG~Pla~lL~~~~A-TVtichs~T~~l~~ 209 (216)
.++.++|+|||.+. +|-.++..|...|. .+|+++..+-+...
T Consensus 18 ~L~~s~VlIiG~gg-lG~evak~La~~GVg~i~lvD~d~ve~sn 60 (197)
T cd01492 18 RLRSARILLIGLKG-LGAEIAKNLVLSGIGSLTILDDRTVTEED 60 (197)
T ss_pred HHHhCcEEEEcCCH-HHHHHHHHHHHcCCCEEEEEECCcccHhh
Confidence 46789999999988 89999999999887 49999877654443
No 295
>cd06298 PBP1_CcpA_like Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation. Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. In gram-positive bacteria, CCR is controlled by HPr, a phosphoenolpyruvate:sugar phsophotrasnferase system (PTS) and a transcriptional regulator CcpA. Moreover, CcpA can regulate sporulation and antibiotic resistance as well as play a role in virulence development of certain pathogens such as the group A streptococcus. The ligand binding domain of CcpA is a member of the LacI-GalR family of bacterial transcription regulators.
Probab=57.94 E-value=52 Score=27.20 Aligned_cols=52 Identities=17% Similarity=0.002 Sum_probs=35.7
Q ss_pred CcchHHHHHHHHHHHHHcCcceEEEeCCCCCCHHHHHHHHHHhcCCCCccEEEEe
Q psy7981 52 REDSNVYIRMKMKAAKEIGIDAQHVKLPRSITEIELLSRLKKLNEDPSVHGIIVQ 106 (216)
Q Consensus 52 ~~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq 106 (216)
++-.....+...+++++.|..+...... -+.+...+.++.+- +.++|||++.
T Consensus 11 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~~~i~~l~-~~~vdgiii~ 62 (268)
T cd06298 11 NSYFAELARGIDDIATMYKYNIILSNSD--NDKEKELKVLNNLL-AKQVDGIIFM 62 (268)
T ss_pred chHHHHHHHHHHHHHHHcCCeEEEEeCC--CCHHHHHHHHHHHH-HhcCCEEEEe
Confidence 4555556677788999999988777432 23455556666654 3679999996
No 296
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=57.88 E-value=13 Score=35.22 Aligned_cols=37 Identities=22% Similarity=0.270 Sum_probs=31.2
Q ss_pred CCCCeEEEecCCCcccHHHHHHhhhCCC-EEEEecCCCC
Q psy7981 168 IAGTNAVVLGRSKIVGTPAAELLKWKHA-TVTVCHSKTK 205 (216)
Q Consensus 168 l~Gk~vvViGrS~~VG~Pla~lL~~~~A-TVtichs~T~ 205 (216)
+.||+|+|||-+. +|.-.+..+...|+ .||+.+..+.
T Consensus 280 ~~gk~VvVIGgG~-~a~d~A~~a~~~Ga~~Vtvv~r~~~ 317 (467)
T TIGR01318 280 VEGKRVVVLGGGD-TAMDCVRTAIRLGAASVTCAYRRDE 317 (467)
T ss_pred cCCCEEEEECCcH-HHHHHHHHHHHcCCCeEEEEEecCc
Confidence 5799999999765 78888888888897 6999997664
No 297
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=57.70 E-value=23 Score=31.77 Aligned_cols=52 Identities=23% Similarity=0.240 Sum_probs=37.4
Q ss_pred ccCCHHHHHHHHHHhCCCCCCCeEEEecCCCcccHHHHHHhhhCCCEEEEecC
Q psy7981 150 IPCTPNGVLELIKRTNVTIAGTNAVVLGRSKIVGTPAAELLKWKHATVTVCHS 202 (216)
Q Consensus 150 ~PcTa~av~~lL~~~~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~ATVtichs 202 (216)
+||.....+..+...+....|.+|+|.|- .-||.-...++...|+.|+++-+
T Consensus 161 l~~~~~ta~~al~~~~~~~~g~~vlV~G~-G~vG~~av~~Ak~~G~~vi~~~~ 212 (357)
T PLN02514 161 LLCAGVTVYSPLSHFGLKQSGLRGGILGL-GGVGHMGVKIAKAMGHHVTVISS 212 (357)
T ss_pred hhhhHHHHHHHHHHcccCCCCCeEEEEcc-cHHHHHHHHHHHHCCCeEEEEeC
Confidence 44444444545555566668999999985 66899998888889998776643
No 298
>cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members. Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=57.67 E-value=29 Score=30.11 Aligned_cols=53 Identities=15% Similarity=0.057 Sum_probs=38.4
Q ss_pred ccCCHHHHHHHHHHhCCCCCCCeEEEecCCCcccHHHHHHhhhCCCEEEEecC
Q psy7981 150 IPCTPNGVLELIKRTNVTIAGTNAVVLGRSKIVGTPAAELLKWKHATVTVCHS 202 (216)
Q Consensus 150 ~PcTa~av~~lL~~~~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~ATVtichs 202 (216)
+||.....+..+...+--..|.+++|.|-+..+|.-+..+....|+.|+.+.+
T Consensus 120 l~~~~~ta~~~l~~~~~~~~~~~vlI~ga~g~ig~~~~~~a~~~g~~v~~~~~ 172 (329)
T cd08250 120 LLVSGLTASIALEEVGEMKSGETVLVTAAAGGTGQFAVQLAKLAGCHVIGTCS 172 (329)
T ss_pred cccHHHHHHHHHHHhcCCCCCCEEEEEeCccHHHHHHHHHHHHcCCeEEEEeC
Confidence 34433334444444443457999999999999999999999999999877653
No 299
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=57.51 E-value=11 Score=31.60 Aligned_cols=43 Identities=16% Similarity=0.389 Sum_probs=34.9
Q ss_pred CCCCCCeEEEecCCCcccHHHHHHhhhCCC-EEEEecCCCCChHH
Q psy7981 166 VTIAGTNAVVLGRSKIVGTPAAELLKWKHA-TVTVCHSKTKNIQD 209 (216)
Q Consensus 166 i~l~Gk~vvViGrS~~VG~Pla~lL~~~~A-TVtichs~T~~l~~ 209 (216)
-.|++++|+|||-+.+ |..++..|...|. .+++.+..+-....
T Consensus 17 ~kl~~~~VlviG~Ggl-Gs~ia~~La~~Gv~~i~lvD~d~ve~sN 60 (202)
T TIGR02356 17 QRLLNSHVLIIGAGGL-GSPAALYLAGAGVGTIVIVDDDHVDLSN 60 (202)
T ss_pred HHhcCCCEEEECCCHH-HHHHHHHHHHcCCCeEEEecCCEEcccc
Confidence 3578999999998765 9999999999997 89999877644333
No 300
>cd00466 DHQase_II Dehydroquinase (DHQase), type II. Dehydroquinase (or 3-dehydroquinate dehydratase) catalyzes the reversible dehydration of 3-dehydroquinate to form 3-dehydroshikimate. This reaction is part of two metabolic pathways: the biosynthetic shikimate pathway and the catabolic quinate pathway. There are two types of DHQases, which are distinct from each other in amino acid sequence and three-dimensional structure. Type I enzymes usually catalyze the biosynthetic reaction using a syn elimination mechanism. In contrast, type II enzymes, found in the quinate pathway of fungi and in the shikimate pathway of many bacteria, are dodecameric enzymes that employ an anti elimination reaction mechanism.
Probab=57.38 E-value=36 Score=27.64 Aligned_cols=57 Identities=19% Similarity=0.351 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHcCcceEEEeCCCCCCHHHHHHHHHHhcCCCCccEEEEeCCCCCCCCCC--HHHHhhhc
Q psy7981 58 YIRMKMKAAKEIGIDAQHVKLPRSITEIELLSRLKKLNEDPSVHGIIVQMPLDSDNDIN--AMLVTDSV 124 (216)
Q Consensus 58 Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvqlPL~~P~~id--~~~i~~~I 124 (216)
..+.-.+.|++.|++++.+. +=.|-|+++.|.+.- .+++||++- |..+. .-.+.+++
T Consensus 29 i~~~l~~~a~~~g~~v~~~Q---SN~Egelid~I~~a~--~~~dgiIIN-----pga~THtSvAi~DAl 87 (140)
T cd00466 29 IEALLRELAAELGVEVEFFQ---SNHEGELIDWIHEAR--DGADGIIIN-----PGAYTHTSIALRDAL 87 (140)
T ss_pred HHHHHHHHHHHcCCEEEEEe---eCcHHHHHHHHHHhh--ccCcEEEEc-----chHHHHHHHHHHHHH
Confidence 35666777888999877664 446899999999973 369999986 55553 33455555
No 301
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=57.08 E-value=12 Score=36.95 Aligned_cols=35 Identities=20% Similarity=0.338 Sum_probs=31.3
Q ss_pred CCCCeEEEecCCCcccHHHHHHhhhCCCEEEEecCC
Q psy7981 168 IAGTNAVVLGRSKIVGTPAAELLKWKHATVTVCHSK 203 (216)
Q Consensus 168 l~Gk~vvViGrS~~VG~Pla~lL~~~~ATVtichs~ 203 (216)
-.|++|+|||.+.. |.-.|..|.+.|+.||+....
T Consensus 325 ~~~~~VaIIGaGpA-GLsaA~~L~~~G~~V~V~E~~ 359 (654)
T PRK12769 325 KSDKRVAIIGAGPA-GLACADVLARNGVAVTVYDRH 359 (654)
T ss_pred cCCCEEEEECCCHH-HHHHHHHHHHCCCeEEEEecC
Confidence 36999999998876 999999999999999999753
No 302
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=57.04 E-value=12 Score=32.53 Aligned_cols=45 Identities=18% Similarity=0.320 Sum_probs=35.5
Q ss_pred CCCCCeEEEecCCCcccHHHHHHhhhCCC-EEEEecCCCCChHHHHh
Q psy7981 167 TIAGTNAVVLGRSKIVGTPAAELLKWKHA-TVTVCHSKTKNIQDVVK 212 (216)
Q Consensus 167 ~l~Gk~vvViGrS~~VG~Pla~lL~~~~A-TVtichs~T~~l~~~~k 212 (216)
.|+.++|+|||-+. +|.+++..|..-|. .+|+++..+-+....-|
T Consensus 29 ~L~~~~VliiG~Gg-lGs~va~~La~~Gvg~i~lvD~D~ve~sNL~R 74 (245)
T PRK05690 29 KLKAARVLVVGLGG-LGCAASQYLAAAGVGTLTLVDFDTVSLSNLQR 74 (245)
T ss_pred HhcCCeEEEECCCH-HHHHHHHHHHHcCCCEEEEEcCCEECcchhhh
Confidence 56899999999965 49999999998875 78888877755544433
No 303
>TIGR02955 TMAO_TorT TMAO reductase system periplasmic protein TorT. Members of this family are the periplasmic protein TorT which, together with the the TorS/TorR histidine kinase/response regulator system, regulates expression of the torCAD operon for trimethylamine N-oxide reductase (TMAO reductase). It appears to bind an inducer for TMAO reductase, and shows homology to a periplasmic D-ribose binding protein.
Probab=56.95 E-value=58 Score=28.02 Aligned_cols=54 Identities=9% Similarity=0.038 Sum_probs=35.5
Q ss_pred CcchHHHHHHHHHHHHHcCcceEEEeCCCCCCHHHHHHHHHHhcCCCCccEEEEe
Q psy7981 52 REDSNVYIRMKMKAAKEIGIDAQHVKLPRSITEIELLSRLKKLNEDPSVHGIIVQ 106 (216)
Q Consensus 52 ~~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq 106 (216)
++-.....+...+.|++.|.++.........+.++..+.++.+- +.+|+||++.
T Consensus 11 n~f~~~~~~gi~~~a~~~g~~v~~~~~~~~~~~~~~~~~i~~l~-~~~vDgiIi~ 64 (295)
T TIGR02955 11 DSYWLSINYGMVEQAKHLGVELKVLEAGGYPNLDKQLAQIEQCK-SWGADAILLG 64 (295)
T ss_pred cHHHHHHHHHHHHHHHHhCCEEEEEcCCCCCCHHHHHHHHHHHH-HcCCCEEEEe
Confidence 33444445677789999999998876543234444456666554 3569999996
No 304
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=56.84 E-value=20 Score=32.47 Aligned_cols=55 Identities=24% Similarity=0.199 Sum_probs=39.3
Q ss_pred cccCCHHHHHHHHHH-hCCCCCCCeEEEecCCCcccHHHHHHhhhCCCEEEEecCCC
Q psy7981 149 FIPCTPNGVLELIKR-TNVTIAGTNAVVLGRSKIVGTPAAELLKWKHATVTVCHSKT 204 (216)
Q Consensus 149 ~~PcTa~av~~lL~~-~~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~ATVtichs~T 204 (216)
-+|++..-.+.+|.. ++... |.+|+|.|.|--||.=...|....|++|.+.-+..
T Consensus 122 al~~~~~TA~~~l~~~~~l~~-g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~s~ 177 (326)
T COG0604 122 ALPLAGLTAWLALFDRAGLKP-GETVLVHGAAGGVGSAAIQLAKALGATVVAVVSSS 177 (326)
T ss_pred HHHHHHHHHHHHHHHhcCCCC-CCEEEEecCCchHHHHHHHHHHHcCCcEEEEecCH
Confidence 345555555555555 34444 99999999999999999999999997744444433
No 305
>PRK14484 phosphotransferase mannnose-specific family component IIA; Provisional
Probab=56.73 E-value=93 Score=24.58 Aligned_cols=77 Identities=16% Similarity=0.191 Sum_probs=46.3
Q ss_pred EEEEeCCCcchHHHHHHHHHHHHHc--CcceEEEeCCC----CCCHHHHHHHHHHhcCCCCccEEEEeCCCCCCCCCCHH
Q psy7981 45 AIVQVGGREDSNVYIRMKMKAAKEI--GIDAQHVKLPR----SITEIELLSRLKKLNEDPSVHGIIVQMPLDSDNDINAM 118 (216)
Q Consensus 45 aiI~vg~~~as~~Yv~~k~k~a~~~--Gi~~~~~~l~~----~~~~~el~~~I~~lN~D~~V~GIlvqlPL~~P~~id~~ 118 (216)
.||.|+ -|..+.+.....++.. ..++....+.+ .++.+++.+.|++++. +|++++.=| +-.-.+..
T Consensus 3 GIVlVS---Hs~~lA~gl~~~~~~i~~~~~i~~~gg~~d~~~gt~~~~i~~ai~~~~~----dGVlVltDL-Gssp~n~~ 74 (124)
T PRK14484 3 GIVIVS---HSKKIAEGVKDLIKQMAPDVPIIYAGGTEDGRIGTSFDQIQEAIEKNES----DGVLIFFDL-GSAEMNAE 74 (124)
T ss_pred eEEEEe---CcHHHHHHHHHHHHHhhCCCCEEEecCCCCCCccchHHHHHHHHHhcCc----CCeEEEEeC-CChHHHHH
Confidence 345555 3333333444444433 44555555444 2467888888988844 799999998 43556667
Q ss_pred HHhhhcCCCCC
Q psy7981 119 LVTDSVSPEKD 129 (216)
Q Consensus 119 ~i~~~I~p~KD 129 (216)
..++.++.++.
T Consensus 75 ~a~e~~~~~~~ 85 (124)
T PRK14484 75 MAIEMLDGEKK 85 (124)
T ss_pred HHHHhcCCCCc
Confidence 77777765543
No 306
>cd01391 Periplasmic_Binding_Protein_Type_1 Type 1 periplasmic binding fold superfamily. Type 1 periplasmic binding fold superfamily. This model and hierarchy represent the ligand binding domains of the LacI family of transcriptional regulators, periplasmic binding proteins of the ABC-type transport systems, the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases including the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domains of the ionotropic glutamate receptors (iGluRs). In LacI-like transcriptional regulator and the bacterial periplasmic binding proteins the ligands are monosaccharides including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars, with a few exceptions. Periplasmic sugar binding proteins are one of the components of ABC transporters and are involved in the active transport of water-soluble ligands. The LacI family of proteins con
Probab=56.34 E-value=65 Score=25.62 Aligned_cols=52 Identities=21% Similarity=0.167 Sum_probs=33.2
Q ss_pred CcchHHHHHHHHHHHHH--cCcceEEEeCCCCCCHHHHHHHHHHhcCCCCccEEEEe
Q psy7981 52 REDSNVYIRMKMKAAKE--IGIDAQHVKLPRSITEIELLSRLKKLNEDPSVHGIIVQ 106 (216)
Q Consensus 52 ~~as~~Yv~~k~k~a~~--~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq 106 (216)
++-...+.+....++++ .|+++..+. ..-+.++..+.++++-.+ .++||++.
T Consensus 12 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~d~ii~~ 65 (269)
T cd01391 12 APFGAQLLAGIELAAEEIGRGLEVILAD--SQSDPERALEALRDLIQQ-GVDGIIGP 65 (269)
T ss_pred cHHHHHHHHHHHHHHHHhCCceEEEEec--CCCCHHHHHHHHHHHHHc-CCCEEEec
Confidence 44555666777788888 565555543 344445666666666544 78999884
No 307
>cd06341 PBP1_ABC_ligand_binding_like_7 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=56.24 E-value=96 Score=27.04 Aligned_cols=53 Identities=15% Similarity=-0.078 Sum_probs=38.4
Q ss_pred chHHHHHHHHHHHHHc-------CcceEEEeCCCCCCHHHHHHHHHHhcCCCCccEEEEe
Q psy7981 54 DSNVYIRMKMKAAKEI-------GIDAQHVKLPRSITEIELLSRLKKLNEDPSVHGIIVQ 106 (216)
Q Consensus 54 as~~Yv~~k~k~a~~~-------Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq 106 (216)
....+.+....+++++ |-+++++..+..-+.++..+..++|-++++|++|+..
T Consensus 15 ~g~~~~~g~~~a~~~~N~~Ggi~G~~i~lv~~D~~~~~~~~~~~~~~li~~~~V~~iig~ 74 (341)
T cd06341 15 SFPGARAGADAAAGYANAAGGIAGRPIEYVWCDDQGDPASAAACARDLVEDDKVVAVVGG 74 (341)
T ss_pred ccHHHHHHHHHHHHHHHhcCCcCCceEEEEEecCCCChhHHHHHHHHHHHhcCceEEEec
Confidence 3455666677777776 5566777776666777778888888888889988874
No 308
>PF08501 Shikimate_dh_N: Shikimate dehydrogenase substrate binding domain; InterPro: IPR013708 This domain is the substrate binding domain of shikimate dehydrogenase []. Shikimate dehydrogenase catalyses the fourth step of the mycobacterial Shikimate pathway, which results in the biosynthesis of chorismate. Chorismate is a precursor of aromatic amino acids, naphthoquinones, menaquinones and mycobactins [, ]. This pathway is an important target for antibacterial agents, especially against Mycobacterium tuberculosis, since it does not occur in mammals.; GO: 0004764 shikimate 3-dehydrogenase (NADP+) activity, 0055114 oxidation-reduction process; PDB: 3U62_A 2EGG_A 1P74_B 1P77_A 3O8Q_A 3TNL_C 3TOZ_G 1NYT_C 1VI2_B 1NPD_A ....
Probab=56.15 E-value=7.1 Score=28.20 Aligned_cols=44 Identities=27% Similarity=0.396 Sum_probs=31.6
Q ss_pred HHHHHHcCcceEEEeCCCCCCHHHHHHHHHHhcCCCCccEEEEeCCC
Q psy7981 63 MKAAKEIGIDAQHVKLPRSITEIELLSRLKKLNEDPSVHGIIVQMPL 109 (216)
Q Consensus 63 ~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvqlPL 109 (216)
-.+.++.|++.....++-+ .+++.+.++.+.+ +++.|.-|.+|.
T Consensus 16 n~~f~~~g~~~~Y~~~~v~--~~~l~~~~~~~~~-~~~~G~~VT~P~ 59 (83)
T PF08501_consen 16 NAAFEALGLDAVYIPFEVE--PEDLEDFLDALRA-PNFRGLNVTMPH 59 (83)
T ss_dssp HHHHHHTTSSEEEEEEETS--TTCHHHHHHHHHH-TTESEEEE-TTS
T ss_pred HHHHHHcCCCcEEEEeecC--HHHHHHHHHHHhc-CCCCeeeecchH
Confidence 4677899999887766543 3455556666555 789999999998
No 309
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=56.10 E-value=12 Score=39.30 Aligned_cols=35 Identities=20% Similarity=0.108 Sum_probs=31.5
Q ss_pred CCCCeEEEecCCCcccHHHHHHhhhCCCEEEEecCC
Q psy7981 168 IAGTNAVVLGRSKIVGTPAAELLKWKHATVTVCHSK 203 (216)
Q Consensus 168 l~Gk~vvViGrS~~VG~Pla~lL~~~~ATVtichs~ 203 (216)
-.||+|+|||-+.- |.-.|..|.++|.+||+....
T Consensus 381 ~tgKKVaVVGaGPA-GLsAA~~La~~Gh~Vtv~E~~ 415 (1028)
T PRK06567 381 PTNYNILVTGLGPA-GFSLSYYLLRSGHNVTAIDGL 415 (1028)
T ss_pred CCCCeEEEECcCHH-HHHHHHHHHhCCCeEEEEccc
Confidence 47999999997776 999999999999999999863
No 310
>cd05286 QOR2 Quinone oxidoreductase (QOR). Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone
Probab=55.90 E-value=39 Score=28.35 Aligned_cols=52 Identities=21% Similarity=0.035 Sum_probs=37.9
Q ss_pred cCCHHHHHHHHHHhCCCCCCCeEEEecCCCcccHHHHHHhhhCCCEEEEecC
Q psy7981 151 PCTPNGVLELIKRTNVTIAGTNAVVLGRSKIVGTPAAELLKWKHATVTVCHS 202 (216)
Q Consensus 151 PcTa~av~~lL~~~~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~ATVtichs 202 (216)
|+-+...+..+...+--..|.+|+|.|.+..+|.-+..+....|+.|+...+
T Consensus 118 ~~~~~~a~~~l~~~~~~~~g~~vlI~g~~g~~g~~~~~~a~~~g~~v~~~~~ 169 (320)
T cd05286 118 LLQGLTAHYLLRETYPVKPGDTVLVHAAAGGVGLLLTQWAKALGATVIGTVS 169 (320)
T ss_pred cchHHHHHHHHHHhcCCCCCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEcC
Confidence 4433444444444443447999999999999999999999999999877643
No 311
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=55.87 E-value=15 Score=33.75 Aligned_cols=36 Identities=22% Similarity=0.245 Sum_probs=30.7
Q ss_pred CCCCCeEEEecCCCcccHHHHHHhhhCCCEEEEecCC
Q psy7981 167 TIAGTNAVVLGRSKIVGTPAAELLKWKHATVTVCHSK 203 (216)
Q Consensus 167 ~l~Gk~vvViGrS~~VG~Pla~lL~~~~ATVtichs~ 203 (216)
.++||+|.|||-+. .|..++..|...|..|.+....
T Consensus 14 ~L~gktIgIIG~Gs-mG~AlA~~L~~sG~~Vvv~~r~ 49 (330)
T PRK05479 14 LIKGKKVAIIGYGS-QGHAHALNLRDSGVDVVVGLRE 49 (330)
T ss_pred hhCCCEEEEEeeHH-HHHHHHHHHHHCCCEEEEEECC
Confidence 36899999999885 6999999999999999886544
No 312
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=55.50 E-value=17 Score=32.69 Aligned_cols=39 Identities=21% Similarity=0.218 Sum_probs=33.2
Q ss_pred hCCCCCCCeEEEecCCCcccHHHHHHhhhCCCEEEEecCC
Q psy7981 164 TNVTIAGTNAVVLGRSKIVGTPAAELLKWKHATVTVCHSK 203 (216)
Q Consensus 164 ~~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~ATVtichs~ 203 (216)
+..+-.|++|+|||.+ ..|.-.|..|.++|..||+....
T Consensus 12 ~~~~~~~~~VvIIG~G-~aGl~aA~~l~~~g~~v~lie~~ 50 (352)
T PRK12770 12 EKPPPTGKKVAIIGAG-PAGLAAAGYLACLGYEVHVYDKL 50 (352)
T ss_pred cCCCCCCCEEEEECcC-HHHHHHHHHHHHCCCcEEEEeCC
Confidence 3455679999999999 77999999999999999998764
No 313
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=55.48 E-value=13 Score=36.74 Aligned_cols=36 Identities=19% Similarity=0.267 Sum_probs=31.4
Q ss_pred CCCCeEEEecCCCcccHHHHHHhhhCCCEEEEecCCC
Q psy7981 168 IAGTNAVVLGRSKIVGTPAAELLKWKHATVTVCHSKT 204 (216)
Q Consensus 168 l~Gk~vvViGrS~~VG~Pla~lL~~~~ATVtichs~T 204 (216)
-.||+|+|||.+.. |.-.|..|.++|+.||++....
T Consensus 308 ~~~kkVaIIG~Gpa-Gl~aA~~L~~~G~~Vtv~e~~~ 343 (639)
T PRK12809 308 PRSEKVAVIGAGPA-GLGCADILARAGVQVDVFDRHP 343 (639)
T ss_pred CCCCEEEEECcCHH-HHHHHHHHHHcCCcEEEEeCCC
Confidence 36999999998765 9999999999999999997654
No 314
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=54.98 E-value=17 Score=34.14 Aligned_cols=46 Identities=17% Similarity=0.242 Sum_probs=36.2
Q ss_pred CCHHHHHHHHHHhCCCCCCCeEEEecCCCcccHHHHHHhhhCCCEEEEecCCC
Q psy7981 152 CTPNGVLELIKRTNVTIAGTNAVVLGRSKIVGTPAAELLKWKHATVTVCHSKT 204 (216)
Q Consensus 152 cTa~av~~lL~~~~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~ATVtichs~T 204 (216)
||...++++-+ .+++++|||-+. +|--+|..|.+.|..||+++...
T Consensus 157 ~~~~~~~~l~~------~~k~vvVIGgG~-ig~E~A~~l~~~G~~Vtli~~~~ 202 (452)
T TIGR03452 157 HTNEDIMRLPE------LPESLVIVGGGY-IAAEFAHVFSALGTRVTIVNRST 202 (452)
T ss_pred EcHHHHHhhhh------cCCcEEEECCCH-HHHHHHHHHHhCCCcEEEEEccC
Confidence 56555555432 378999999885 59999999999999999998654
No 315
>COG0794 GutQ Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]
Probab=54.77 E-value=7.6 Score=33.36 Aligned_cols=32 Identities=22% Similarity=0.296 Sum_probs=27.7
Q ss_pred CCCeEEE--ecCCCcccHHHHHHhhhCCCEEEEec
Q psy7981 169 AGTNAVV--LGRSKIVGTPAAELLKWKHATVTVCH 201 (216)
Q Consensus 169 ~Gk~vvV--iGrS~~VG~Pla~lL~~~~ATVtich 201 (216)
+|| |+| +|||.+|||-+|+-|+.-|..+.+.|
T Consensus 39 ~gk-v~V~G~GkSG~Igkk~Aa~L~s~G~~a~fv~ 72 (202)
T COG0794 39 KGK-VFVTGVGKSGLIGKKFAARLASTGTPAFFVG 72 (202)
T ss_pred CCc-EEEEcCChhHHHHHHHHHHHHccCCceEEec
Confidence 454 444 67999999999999999999999999
No 316
>cd06317 PBP1_ABC_sugar_binding_like_8 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Pperiplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=54.73 E-value=70 Score=26.55 Aligned_cols=53 Identities=19% Similarity=0.219 Sum_probs=38.0
Q ss_pred CCcchHHHHHHHHHHHHHcCcceEEEeCCCCCCHHHHHHHHHHhcCCCCccEEEEe
Q psy7981 51 GREDSNVYIRMKMKAAKEIGIDAQHVKLPRSITEIELLSRLKKLNEDPSVHGIIVQ 106 (216)
Q Consensus 51 ~~~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq 106 (216)
+++-...+.+...+.|++.|+++.... ...+.++..+.++.+... .++||++.
T Consensus 11 ~~~~~~~~~~g~~~~~~~~g~~~~~~~--~~~~~~~~~~~~~~l~~~-~vdgiii~ 63 (275)
T cd06317 11 SHSYQTTYNKAFQAAAEEDGVEVIVLD--ANGDVARQAAQVEDLIAQ-KVDGIILW 63 (275)
T ss_pred CCHHHHHHHHHHHHHHHhcCCEEEEEc--CCcCHHHHHHHHHHHHHc-CCCEEEEe
Confidence 455556667888889999999987764 334555666777776654 69999995
No 317
>PRK13015 3-dehydroquinate dehydratase; Reviewed
Probab=54.53 E-value=38 Score=27.74 Aligned_cols=57 Identities=19% Similarity=0.344 Sum_probs=39.6
Q ss_pred HHHHHHHHHHcCcceEEEeCCCCCCHHHHHHHHHHhcCCCCccEEEEeCCCCCCCCCC--HHHHhhhcC
Q psy7981 59 IRMKMKAAKEIGIDAQHVKLPRSITEIELLSRLKKLNEDPSVHGIIVQMPLDSDNDIN--AMLVTDSVS 125 (216)
Q Consensus 59 v~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvqlPL~~P~~id--~~~i~~~I~ 125 (216)
.+.-.+.|++.|++++.+. +-.|-|+++.|.+. ..+++||++- |..+. .-.+.+++.
T Consensus 32 ~~~~~~~a~~~g~~~~~~Q---SN~EGelId~i~~a--~~~~dgiIIN-----pga~THtSiAl~DAl~ 90 (146)
T PRK13015 32 EALCRAAAEALGLEVEFRQ---SNHEGELIDWIHEA--RGDVAGIVIN-----PGAYTHTSVAIRDALA 90 (146)
T ss_pred HHHHHHHHHHcCCEEEEEe---eCcHHHHHHHHHHh--hhcCCEEEEc-----chHHhhhHHHHHHHHH
Confidence 4556677888999877653 44689999999997 3358998885 55553 345556553
No 318
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=54.48 E-value=27 Score=30.76 Aligned_cols=52 Identities=12% Similarity=0.116 Sum_probs=36.7
Q ss_pred ccCCHHHHHHHHHHhCCCCCCCeEEEecCCCcccHHHHHHhhhCCCEEEEecCC
Q psy7981 150 IPCTPNGVLELIKRTNVTIAGTNAVVLGRSKIVGTPAAELLKWKHATVTVCHSK 203 (216)
Q Consensus 150 ~PcTa~av~~lL~~~~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~ATVtichs~ 203 (216)
+||.....+..++... --.|.+|+|.| +..+|.-+..++...|+.|+...+.
T Consensus 145 l~~~~~ta~~~~~~~~-~~~~~~vlV~g-~g~iG~~~~~~a~~~G~~vi~~~~~ 196 (333)
T cd08296 145 LLCAGVTTFNALRNSG-AKPGDLVAVQG-IGGLGHLAVQYAAKMGFRTVAISRG 196 (333)
T ss_pred hhhhhHHHHHHHHhcC-CCCCCEEEEEC-CcHHHHHHHHHHHHCCCeEEEEeCC
Confidence 3443333343344332 23689999999 8999999999999999998887553
No 319
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=54.34 E-value=29 Score=32.03 Aligned_cols=54 Identities=11% Similarity=0.153 Sum_probs=44.0
Q ss_pred CcccCCHHHHHHHHHHhC-CCCCCCeEEEecCCCcccHHHHHHhhhCCCEEEEecC
Q psy7981 148 GFIPCTPNGVLELIKRTN-VTIAGTNAVVLGRSKIVGTPAAELLKWKHATVTVCHS 202 (216)
Q Consensus 148 ~~~PcTa~av~~lL~~~~-i~l~Gk~vvViGrS~~VG~Pla~lL~~~~ATVtichs 202 (216)
-++=+++..+-++.+.++ .....++++|+|-+ -+|+.++..|.++|..|++...
T Consensus 208 l~v~g~~~~l~~~~~~~~~~~~~~~~iiIiG~G-~~g~~l~~~L~~~~~~v~vid~ 262 (453)
T PRK09496 208 VYFIGAREHIRAVMSEFGRLEKPVKRVMIVGGG-NIGYYLAKLLEKEGYSVKLIER 262 (453)
T ss_pred EEEEeCHHHHHHHHHHhCccCCCCCEEEEECCC-HHHHHHHHHHHhCCCeEEEEEC
Confidence 355688888888887764 45678999999995 5599999999999999999854
No 320
>cd08288 MDR_yhdh Yhdh putative quinone oxidoreductases. Yhdh putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catal
Probab=54.31 E-value=28 Score=30.02 Aligned_cols=39 Identities=26% Similarity=0.198 Sum_probs=31.9
Q ss_pred HhCCCCCCCeEEEecCCCcccHHHHHHhhhCCCEEEEec
Q psy7981 163 RTNVTIAGTNAVVLGRSKIVGTPAAELLKWKHATVTVCH 201 (216)
Q Consensus 163 ~~~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~ATVtich 201 (216)
..++.-.|.+|+|.|-+..+|.-+..+....|+.|...-
T Consensus 140 ~~~~~~~~~~vlI~ga~g~vg~~~~~~A~~~G~~vi~~~ 178 (324)
T cd08288 140 DHGVTPGDGPVLVTGAAGGVGSVAVALLARLGYEVVAST 178 (324)
T ss_pred hcCcCCCCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEe
Confidence 334433578999999999999999999999999987653
No 321
>PRK09004 FMN-binding protein MioC; Provisional
Probab=54.30 E-value=95 Score=24.65 Aligned_cols=108 Identities=13% Similarity=0.125 Sum_probs=66.9
Q ss_pred eEEEEEeCCCcchHHHHHHHHHHHHHcCcceEEEeCCCCCCHHHHHHHHHHhcCCCCccEEEEeCCCCCCCCCCHHHHhh
Q psy7981 43 GLAIVQVGGREDSNVYIRMKMKAAKEIGIDAQHVKLPRSITEIELLSRLKKLNEDPSVHGIIVQMPLDSDNDINAMLVTD 122 (216)
Q Consensus 43 ~LaiI~vg~~~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvqlPL~~P~~id~~~i~~ 122 (216)
++.|+.....-.++.+.+...+.+.+.|+++.++...+ ++.+. +-+.+++-.|=.+
T Consensus 3 ~i~I~ygS~tGnae~~A~~l~~~~~~~g~~~~~~~~~~----------~~~l~---~~~~li~~~sT~G----------- 58 (146)
T PRK09004 3 DITLISGSTLGGAEYVADHLAEKLEEAGFSTETLHGPL----------LDDLS---ASGLWLIVTSTHG----------- 58 (146)
T ss_pred eEEEEEEcCchHHHHHHHHHHHHHHHcCCceEEeccCC----------HHHhc---cCCeEEEEECCCC-----------
Confidence 46666666667889999999999999999988764321 12222 2234444433210
Q ss_pred hcCCCCCcccCCccchhHhhcCCCCCcccCCHHHHHHHHHHhCCCCCCCeEEEecCC-------CcccHHHHHHhhhCCC
Q psy7981 123 SVSPEKDVDGLNTINEGRVAIGDMNGFIPCTPNGVLELIKRTNVTIAGTNAVVLGRS-------KIVGTPAAELLKWKHA 195 (216)
Q Consensus 123 ~I~p~KDVDG~~~~n~G~l~~~~~~~~~PcTa~av~~lL~~~~i~l~Gk~vvViGrS-------~~VG~Pla~lL~~~~A 195 (216)
| +=.|-++.-.++-|+...-+++|++..|.|=+ .-.++-+...|...||
T Consensus 59 --------~----------------Ge~p~~~~~f~~~L~~~~~~l~g~~~aVfGlGds~Y~~fc~~~~~ld~~l~~lGa 114 (146)
T PRK09004 59 --------A----------------GDLPDNLQPFFEELQEQKPDLSQVRFAAIGIGSSEYDTFCGAIDKLEQLLKAKGA 114 (146)
T ss_pred --------C----------------CCCChhHHHHHHHHHhcCCCCCCCEEEEEeecCCCHHHHhHHHHHHHHHHHHcCC
Confidence 1 11233344444445444456889999998832 4566888888888888
Q ss_pred EEE
Q psy7981 196 TVT 198 (216)
Q Consensus 196 TVt 198 (216)
+..
T Consensus 115 ~~v 117 (146)
T PRK09004 115 KQI 117 (146)
T ss_pred eEe
Confidence 865
No 322
>PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A.
Probab=54.10 E-value=34 Score=25.11 Aligned_cols=48 Identities=25% Similarity=0.315 Sum_probs=27.5
Q ss_pred CCHHHHHHHHHH----h--CCCCCC-CeEEEecCCCcccHH--HHHHhhhCCC-EEEEe
Q psy7981 152 CTPNGVLELIKR----T--NVTIAG-TNAVVLGRSKIVGTP--AAELLKWKHA-TVTVC 200 (216)
Q Consensus 152 cTa~av~~lL~~----~--~i~l~G-k~vvViGrS~~VG~P--la~lL~~~~A-TVtic 200 (216)
|-|.||.+..+. . .-++.| |+|+|||.|.=.|.- ++..+ .-|| |+-+.
T Consensus 14 aHP~GC~~~V~~qI~yvk~~~~~~GpK~VLViGaStGyGLAsRIa~aF-g~gA~TiGV~ 71 (78)
T PF12242_consen 14 AHPVGCARNVENQIEYVKSQGKINGPKKVLVIGASTGYGLASRIAAAF-GAGADTIGVS 71 (78)
T ss_dssp --HHHHHHHHHHHHHHHHHC---TS-SEEEEES-SSHHHHHHHHHHHH-CC--EEEEEE
T ss_pred CCcHHHHHHHHHHHHHHHhcCCCCCCceEEEEecCCcccHHHHHHHHh-cCCCCEEEEe
Confidence 567777766653 1 345688 999999999988877 55555 4444 44443
No 323
>KOG0069|consensus
Probab=54.05 E-value=17 Score=33.58 Aligned_cols=41 Identities=29% Similarity=0.344 Sum_probs=36.2
Q ss_pred CCCCCCeEEEecCCCcccHHHHHHhhhCCCEEEEecCCCCChH
Q psy7981 166 VTIAGTNAVVLGRSKIVGTPAAELLKWKHATVTVCHSKTKNIQ 208 (216)
Q Consensus 166 i~l~Gk~vvViGrS~~VG~Pla~lL~~~~ATVtichs~T~~l~ 208 (216)
.+++||+|.|+|-+.+ |+-+|..|..-| .+...|++++...
T Consensus 158 ~~~~gK~vgilG~G~I-G~~ia~rL~~Fg-~~i~y~~r~~~~~ 198 (336)
T KOG0069|consen 158 YDLEGKTVGILGLGRI-GKAIAKRLKPFG-CVILYHSRTQLPP 198 (336)
T ss_pred ccccCCEEEEecCcHH-HHHHHHhhhhcc-ceeeeecccCCch
Confidence 5789999999999988 999999999988 8889999987633
No 324
>cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases. Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et
Probab=53.85 E-value=32 Score=28.87 Aligned_cols=43 Identities=26% Similarity=0.210 Sum_probs=34.7
Q ss_pred HHHHhCCCCCCCeEEEecCCCcccHHHHHHhhhCCCEEEEecC
Q psy7981 160 LIKRTNVTIAGTNAVVLGRSKIVGTPAAELLKWKHATVTVCHS 202 (216)
Q Consensus 160 lL~~~~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~ATVtichs 202 (216)
.+...+-...|.+++|.|-+..+|.-++.++...|+.|++...
T Consensus 135 ~~~~~~~~~~~~~vlv~g~~g~~g~~~~~~a~~~g~~v~~~~~ 177 (309)
T cd05289 135 ALFELGGLKAGQTVLIHGAAGGVGSFAVQLAKARGARVIATAS 177 (309)
T ss_pred HHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEec
Confidence 3444443457999999999999999999999999999987754
No 325
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=53.73 E-value=18 Score=30.87 Aligned_cols=36 Identities=19% Similarity=0.216 Sum_probs=30.8
Q ss_pred CCCCeEEEecCCCcccHHHHHHhhhCCCEEEEecCCC
Q psy7981 168 IAGTNAVVLGRSKIVGTPAAELLKWKHATVTVCHSKT 204 (216)
Q Consensus 168 l~Gk~vvViGrS~~VG~Pla~lL~~~~ATVtichs~T 204 (216)
..|++|+|||-+ ..|--++..|.+.+..||+.+...
T Consensus 139 ~~~~~v~ViG~G-~~~~e~a~~l~~~~~~V~~v~~~~ 174 (300)
T TIGR01292 139 FKNKEVAVVGGG-DSAIEEALYLTRIAKKVTLVHRRD 174 (300)
T ss_pred cCCCEEEEECCC-hHHHHHHHHHHhhcCEEEEEEeCc
Confidence 478999999977 459999999998899999998754
No 326
>cd05276 p53_inducible_oxidoreductase PIG3 p53-inducible quinone oxidoreductase. PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding
Probab=53.73 E-value=34 Score=28.78 Aligned_cols=35 Identities=31% Similarity=0.305 Sum_probs=31.0
Q ss_pred CCCCeEEEecCCCcccHHHHHHhhhCCCEEEEecC
Q psy7981 168 IAGTNAVVLGRSKIVGTPAAELLKWKHATVTVCHS 202 (216)
Q Consensus 168 l~Gk~vvViGrS~~VG~Pla~lL~~~~ATVtichs 202 (216)
..|.+|+|.|.+.-+|.-++.++...|++|.+.-+
T Consensus 138 ~~~~~vlv~g~~~~ig~~~~~~~~~~g~~v~~~~~ 172 (323)
T cd05276 138 KAGETVLIHGGASGVGTAAIQLAKALGARVIATAG 172 (323)
T ss_pred CCCCEEEEEcCcChHHHHHHHHHHHcCCEEEEEcC
Confidence 47899999999999999999999999999876644
No 327
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=53.63 E-value=16 Score=34.63 Aligned_cols=35 Identities=23% Similarity=0.359 Sum_probs=30.7
Q ss_pred CCCCeEEEecCCCcccHHHHHHhhhCCCEEEEecCC
Q psy7981 168 IAGTNAVVLGRSKIVGTPAAELLKWKHATVTVCHSK 203 (216)
Q Consensus 168 l~Gk~vvViGrS~~VG~Pla~lL~~~~ATVtichs~ 203 (216)
-.|++|+|||.+.. |.-.|..|.++|+.||+....
T Consensus 139 ~~~~~V~IIG~Gpa-Gl~aA~~l~~~G~~V~i~e~~ 173 (467)
T TIGR01318 139 PTGKRVAVIGAGPA-GLACADILARAGVQVVVFDRH 173 (467)
T ss_pred CCCCeEEEECCCHH-HHHHHHHHHHcCCeEEEEecC
Confidence 47999999998865 999999999999999999654
No 328
>cd06302 PBP1_LsrB_Quorum_Sensing Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs. Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs from other bacteria. The members of this group are homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transporters of many sugar based solutes in bacteria and archaea and that are a member of the type I periplasmic binding protein superfamily. LsrB binds a chemically distinct form of the AI-2 signal that lacks boron, in contrast to the Vibrio harveyi AI-2 signaling molecule that has an unusual furanosyl borate diester. Hence, many bacteria coordinate their gene expression according to the local density of their population by producing species specific AI-2. This process of quorum sensing allows LsrB to function as a periplasmic AI-2 binding p
Probab=53.41 E-value=78 Score=27.27 Aligned_cols=53 Identities=26% Similarity=0.234 Sum_probs=36.4
Q ss_pred CcchHHHHHHHHHHHHHcCcceEEEeCCCCCCHHHHHHHHHHhcCCCCccEEEEe
Q psy7981 52 REDSNVYIRMKMKAAKEIGIDAQHVKLPRSITEIELLSRLKKLNEDPSVHGIIVQ 106 (216)
Q Consensus 52 ~~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq 106 (216)
++-....++..++.|++.|+++.... +.+.++++..+.++.+... .++||++.
T Consensus 11 ~~f~~~i~~gi~~~a~~~g~~v~~~~-~~~~d~~~~~~~i~~~~~~-~~DgiIi~ 63 (298)
T cd06302 11 IPYFNRMEEGAKEAAKELGVDAIYVG-PTTADAAGQVQIIEDLIAQ-GVDAIAVV 63 (298)
T ss_pred ChHHHHHHHHHHHHHHHhCCeEEEEC-CCCCCHHHHHHHHHHHHhc-CCCEEEEe
Confidence 44445556888899999999887542 3334455666777776543 58999996
No 329
>cd06294 PBP1_ycjW_transcription_regulator_like Ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors. This group includes the ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=53.18 E-value=1.1e+02 Score=25.21 Aligned_cols=55 Identities=24% Similarity=0.179 Sum_probs=35.5
Q ss_pred CCcchHHHHHHHHHHHHHcCcceEEEeCCCCCCHHHHHHHHHHhcCCCCccEEEEeCC
Q psy7981 51 GREDSNVYIRMKMKAAKEIGIDAQHVKLPRSITEIELLSRLKKLNEDPSVHGIIVQMP 108 (216)
Q Consensus 51 ~~~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvqlP 108 (216)
+++-...+.+...++|++.|+++....-. + . ++-.+.+.++-....++||++.-+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~-~-~~~~~~~~~~~~~~~~dgiii~~~ 69 (270)
T cd06294 15 QNPFFIEVLRGISAVANENGYDISLATGK-N-E-EELLEEVKKMIQQKRVDGFILLYS 69 (270)
T ss_pred CCCCHHHHHHHHHHHHHHCCCEEEEecCC-C-c-HHHHHHHHHHHHHcCcCEEEEecC
Confidence 35556677788889999999998765332 2 2 233344444433456999999744
No 330
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=53.02 E-value=17 Score=34.19 Aligned_cols=36 Identities=22% Similarity=0.201 Sum_probs=31.4
Q ss_pred CCCCCeEEEecCCCcccHHHHHHhhhCCCEEEEecCC
Q psy7981 167 TIAGTNAVVLGRSKIVGTPAAELLKWKHATVTVCHSK 203 (216)
Q Consensus 167 ~l~Gk~vvViGrS~~VG~Pla~lL~~~~ATVtichs~ 203 (216)
+..+++|+|||.+ .-|.-.|..|.++|..||++...
T Consensus 130 ~~~~~~V~IIG~G-~aGl~aA~~l~~~G~~V~vie~~ 165 (449)
T TIGR01316 130 PSTHKKVAVIGAG-PAGLACASELAKAGHSVTVFEAL 165 (449)
T ss_pred CCCCCEEEEECcC-HHHHHHHHHHHHCCCcEEEEecC
Confidence 3578999999977 56999999999999999999764
No 331
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=53.00 E-value=14 Score=36.53 Aligned_cols=33 Identities=24% Similarity=0.330 Sum_probs=28.9
Q ss_pred CeEEEecCCCcccHHHHHHhhhCCCEEEEecCCC
Q psy7981 171 TNAVVLGRSKIVGTPAAELLKWKHATVTVCHSKT 204 (216)
Q Consensus 171 k~vvViGrS~~VG~Pla~lL~~~~ATVtichs~T 204 (216)
.+|+|||- .++|.-+|..|.++|..||+.....
T Consensus 261 ~dVvIIGa-GIaG~s~A~~La~~G~~V~VlE~~~ 293 (662)
T PRK01747 261 RDAAIIGG-GIAGAALALALARRGWQVTLYEADE 293 (662)
T ss_pred CCEEEECc-cHHHHHHHHHHHHCCCeEEEEecCC
Confidence 47999995 5789999999999999999998653
No 332
>cd05284 arabinose_DH_like D-arabinose dehydrogenase. This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d
Probab=52.94 E-value=30 Score=30.18 Aligned_cols=53 Identities=21% Similarity=0.231 Sum_probs=35.9
Q ss_pred cccCCHHHHHHHHHHh-CCCCCCCeEEEecCCCcccHHHHHHhhhCC-CEEEEecC
Q psy7981 149 FIPCTPNGVLELIKRT-NVTIAGTNAVVLGRSKIVGTPAAELLKWKH-ATVTVCHS 202 (216)
Q Consensus 149 ~~PcTa~av~~lL~~~-~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~-ATVtichs 202 (216)
.+|+.....+..|... +.-..|.+|+|.|-+. ||.-++.++...| ++|+...+
T Consensus 146 ~l~~~~~ta~~~l~~~~~~~~~~~~vlI~g~~~-vg~~~~~~a~~~g~~~v~~~~~ 200 (340)
T cd05284 146 PLADAGLTAYHAVKKALPYLDPGSTVVVIGVGG-LGHIAVQILRALTPATVIAVDR 200 (340)
T ss_pred hhcchHHHHHHHHHHhcccCCCCCEEEEEcCcH-HHHHHHHHHHHhCCCcEEEEeC
Confidence 3454444444444433 2234699999999554 9999999999998 78876644
No 333
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=52.82 E-value=17 Score=33.54 Aligned_cols=36 Identities=22% Similarity=0.228 Sum_probs=30.6
Q ss_pred CCCCeEEEecCCCcccHHHHHHhhhCCCEEEEecCCC
Q psy7981 168 IAGTNAVVLGRSKIVGTPAAELLKWKHATVTVCHSKT 204 (216)
Q Consensus 168 l~Gk~vvViGrS~~VG~Pla~lL~~~~ATVtichs~T 204 (216)
..+++|+|||.+. +|-.++..|.+.|..||+++...
T Consensus 147 ~~~~~vvVvGgG~-~g~e~A~~l~~~g~~Vtli~~~~ 182 (444)
T PRK09564 147 EEIKNIVIIGAGF-IGLEAVEAAKHLGKNVRIIQLED 182 (444)
T ss_pred cCCCEEEEECCCH-HHHHHHHHHHhcCCcEEEEeCCc
Confidence 3589999999665 69999999999999999997643
No 334
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=52.73 E-value=15 Score=34.69 Aligned_cols=34 Identities=29% Similarity=0.346 Sum_probs=30.1
Q ss_pred CCCCeEEEecCCCcccHHHHHHhhhCCCEEEEecC
Q psy7981 168 IAGTNAVVLGRSKIVGTPAAELLKWKHATVTVCHS 202 (216)
Q Consensus 168 l~Gk~vvViGrS~~VG~Pla~lL~~~~ATVtichs 202 (216)
-.|++|+|||.+ ..|.-.|..|.++|..||++..
T Consensus 141 ~~~~~VvIIGaG-pAGl~aA~~l~~~G~~V~vie~ 174 (471)
T PRK12810 141 RTGKKVAVVGSG-PAGLAAADQLARAGHKVTVFER 174 (471)
T ss_pred CCCCEEEEECcC-HHHHHHHHHHHhCCCcEEEEec
Confidence 468999999988 5699999999999999999864
No 335
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=52.59 E-value=16 Score=35.04 Aligned_cols=37 Identities=27% Similarity=0.205 Sum_probs=32.0
Q ss_pred CCCCCeEEEecCCCcccHHHHHHhhhCCCEEEEecCCC
Q psy7981 167 TIAGTNAVVLGRSKIVGTPAAELLKWKHATVTVCHSKT 204 (216)
Q Consensus 167 ~l~Gk~vvViGrS~~VG~Pla~lL~~~~ATVtichs~T 204 (216)
...||+|+|||-+. .|-=+|..|...+..||+++...
T Consensus 348 ~~~gk~VvVVGgG~-~g~e~A~~L~~~~~~Vtlv~~~~ 384 (517)
T PRK15317 348 LFKGKRVAVIGGGN-SGVEAAIDLAGIVKHVTVLEFAP 384 (517)
T ss_pred hcCCCEEEEECCCH-HHHHHHHHHHhcCCEEEEEEECc
Confidence 45899999999876 49999999999999999998754
No 336
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=52.59 E-value=21 Score=32.61 Aligned_cols=39 Identities=21% Similarity=0.251 Sum_probs=34.3
Q ss_pred CCCCCCCeEEEecCCCcccHHHHHHhhhCCCEEEEecCCC
Q psy7981 165 NVTIAGTNAVVLGRSKIVGTPAAELLKWKHATVTVCHSKT 204 (216)
Q Consensus 165 ~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~ATVtichs~T 204 (216)
+.++.||++-|||-+.+ |+-+|..+..-|+.|...|.+.
T Consensus 141 ~~~l~gktvGIiG~GrI-G~avA~r~~~Fgm~v~y~~~~~ 179 (324)
T COG1052 141 GFDLRGKTLGIIGLGRI-GQAVARRLKGFGMKVLYYDRSP 179 (324)
T ss_pred ccCCCCCEEEEECCCHH-HHHHHHHHhcCCCEEEEECCCC
Confidence 45799999999999988 9999999998899998877654
No 337
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=52.55 E-value=16 Score=33.19 Aligned_cols=34 Identities=18% Similarity=0.235 Sum_probs=29.6
Q ss_pred CCeEEEecCCCcccHHHHHHhhhCCCEEEEecCCC
Q psy7981 170 GTNAVVLGRSKIVGTPAAELLKWKHATVTVCHSKT 204 (216)
Q Consensus 170 Gk~vvViGrS~~VG~Pla~lL~~~~ATVtichs~T 204 (216)
-.+|+|||.+. +|.-+|..|.+.|..|++.-+.+
T Consensus 18 ~~dV~IvGaG~-aGl~~A~~L~~~G~~v~v~E~~~ 51 (415)
T PRK07364 18 TYDVAIVGGGI-VGLTLAAALKDSGLRIALIEAQP 51 (415)
T ss_pred ccCEEEECcCH-HHHHHHHHHhcCCCEEEEEecCC
Confidence 36799999765 59999999999999999998765
No 338
>cd06295 PBP1_CelR Ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. This group includes the ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. The binding of CelR to the celE promoter is inhibited specifically by cellobiose. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn chang
Probab=52.44 E-value=1.1e+02 Score=25.61 Aligned_cols=50 Identities=16% Similarity=-0.001 Sum_probs=32.8
Q ss_pred CcchHHHHHHHHHHHHHcCcceEEEeCCCCCCHHHHHHHHHHhcCCCCccEEEEe
Q psy7981 52 REDSNVYIRMKMKAAKEIGIDAQHVKLPRSITEIELLSRLKKLNEDPSVHGIIVQ 106 (216)
Q Consensus 52 ~~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq 106 (216)
++--..+.+...+.|++.|+.+.......+ .++.+.+.+. ..++|||++.
T Consensus 22 ~~~~~~~~~gi~~~~~~~g~~~~v~~~~~~-~~~~~~~~l~----~~~~dgiii~ 71 (275)
T cd06295 22 DPFFLSLLGGIADALAERGYDLLLSFVSSP-DRDWLARYLA----SGRADGVILI 71 (275)
T ss_pred CchHHHHHHHHHHHHHHcCCEEEEEeCCch-hHHHHHHHHH----hCCCCEEEEe
Confidence 334455567788999999999887765443 3334443332 2468999996
No 339
>cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from
Probab=52.30 E-value=1.4e+02 Score=24.88 Aligned_cols=74 Identities=15% Similarity=0.249 Sum_probs=51.6
Q ss_pred CCceEEEEEeCCCcchHHHHHHHHHHHHHcCcceEEEeCCCCCCHHHHHHHHHHhcCCCCccEEEEeCCCCCCCCCCHHH
Q psy7981 40 FEPGLAIVQVGGREDSNVYIRMKMKAAKEIGIDAQHVKLPRSITEIELLSRLKKLNEDPSVHGIIVQMPLDSDNDINAML 119 (216)
Q Consensus 40 ~~P~LaiI~vg~~~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvqlPL~~P~~id~~~ 119 (216)
..|++++|-....+ ...|.+.-.++.+++|++...+...++.+.+++.+.|.. .++|.+- +=|...
T Consensus 28 ~~~~i~~iptA~~~-~~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~l~~------ad~I~~~-------GG~~~~ 93 (210)
T cd03129 28 AGARVLFIPTASGD-RDEYGEEYRAAFERLGVEVVHLLLIDTANDPDVVARLLE------ADGIFVG-------GGNQLR 93 (210)
T ss_pred CCCeEEEEeCCCCC-hHHHHHHHHHHHHHcCCceEEEeccCCCCCHHHHHHHhh------CCEEEEc-------CCcHHH
Confidence 57889888777654 667888889999999999998887655555777777743 4577762 234445
Q ss_pred HhhhcCCC
Q psy7981 120 VTDSVSPE 127 (216)
Q Consensus 120 i~~~I~p~ 127 (216)
+++.+...
T Consensus 94 ~~~~l~~t 101 (210)
T cd03129 94 LLSVLRET 101 (210)
T ss_pred HHHHHHhC
Confidence 55555443
No 340
>PRK05395 3-dehydroquinate dehydratase; Provisional
Probab=52.27 E-value=48 Score=27.15 Aligned_cols=57 Identities=21% Similarity=0.399 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHcCcceEEEeCCCCCCHHHHHHHHHHhcCCCCccEEEEeCCCCCCCCCC--HHHHhhhc
Q psy7981 58 YIRMKMKAAKEIGIDAQHVKLPRSITEIELLSRLKKLNEDPSVHGIIVQMPLDSDNDIN--AMLVTDSV 124 (216)
Q Consensus 58 Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvqlPL~~P~~id--~~~i~~~I 124 (216)
..+.-.+.|++.|++++.+. +-.|-|+++.|.+.-+ +++||++- |..+. .-.+.+++
T Consensus 31 i~~~~~~~a~~~g~~v~~~Q---SN~EGelId~I~~a~~--~~dgiiIN-----pga~THtSiAl~DAl 89 (146)
T PRK05395 31 IEALLEEEAAELGVELEFFQ---SNHEGELIDRIHEARD--GADGIIIN-----PGAYTHTSVALRDAL 89 (146)
T ss_pred HHHHHHHHHHHcCCEEEEEe---eCcHHHHHHHHHhccc--CCcEEEEC-----chHHHHHHHHHHHHH
Confidence 35666778889999877654 4468999999998733 69999985 55553 34555555
No 341
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=52.24 E-value=40 Score=28.64 Aligned_cols=51 Identities=27% Similarity=0.211 Sum_probs=36.9
Q ss_pred ccCCHHHHHHHHHHhCCCCCCCeEEEecCCCcccHHHHHHhhhCCCEEEEe
Q psy7981 150 IPCTPNGVLELIKRTNVTIAGTNAVVLGRSKIVGTPAAELLKWKHATVTVC 200 (216)
Q Consensus 150 ~PcTa~av~~lL~~~~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~ATVtic 200 (216)
+||.....+..+....---.|..|+|.|-+..+|.-+..+...+|+.|+..
T Consensus 123 ~~~~~~ta~~~l~~~~~~~~g~~vlV~ga~g~~g~~~~~~a~~~g~~v~~~ 173 (320)
T cd08243 123 LPETYYTAWGSLFRSLGLQPGDTLLIRGGTSSVGLAALKLAKALGATVTAT 173 (320)
T ss_pred cchHHHHHHHHHHHhcCCCCCCEEEEEcCCChHHHHHHHHHHHcCCEEEEE
Confidence 344333333344444333468999999999999999999999999998655
No 342
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=51.90 E-value=17 Score=35.21 Aligned_cols=36 Identities=22% Similarity=0.281 Sum_probs=31.5
Q ss_pred CCCCeEEEecCCCcccHHHHHHhhhCCCEEEEecCCC
Q psy7981 168 IAGTNAVVLGRSKIVGTPAAELLKWKHATVTVCHSKT 204 (216)
Q Consensus 168 l~Gk~vvViGrS~~VG~Pla~lL~~~~ATVtichs~T 204 (216)
..|++|+|||-+. +|--+|..|.+.+..||+++...
T Consensus 141 ~~g~~VvVIGgG~-~g~E~A~~L~~~g~~Vtli~~~~ 176 (555)
T TIGR03143 141 FTGMDVFVIGGGF-AAAEEAVFLTRYASKVTVIVREP 176 (555)
T ss_pred cCCCEEEEECCCH-HHHHHHHHHHccCCEEEEEEeCC
Confidence 4799999999886 49999999999999999998754
No 343
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=51.84 E-value=22 Score=33.47 Aligned_cols=35 Identities=23% Similarity=0.270 Sum_probs=30.5
Q ss_pred CCCeEEEecCCCcccHHHHHHhhhCCCEEEEecCCC
Q psy7981 169 AGTNAVVLGRSKIVGTPAAELLKWKHATVTVCHSKT 204 (216)
Q Consensus 169 ~Gk~vvViGrS~~VG~Pla~lL~~~~ATVtichs~T 204 (216)
.+++++|||-+ .+|--+|..|.+.|..||++++..
T Consensus 179 ~~~~vvIIGgG-~~G~E~A~~l~~~g~~Vtli~~~~ 213 (472)
T PRK05976 179 LPKSLVIVGGG-VIGLEWASMLADFGVEVTVVEAAD 213 (472)
T ss_pred cCCEEEEECCC-HHHHHHHHHHHHcCCeEEEEEecC
Confidence 47999999955 579999999999999999998654
No 344
>cd06299 PBP1_LacI_like_13 Ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This group includes the ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This regulatory protein is a member of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial trans
Probab=51.72 E-value=1.4e+02 Score=24.66 Aligned_cols=53 Identities=19% Similarity=0.039 Sum_probs=36.7
Q ss_pred CCcchHHHHHHHHHHHHHcCcceEEEeCCCCCCHHHHHHHHHHhcCCCCccEEEEe
Q psy7981 51 GREDSNVYIRMKMKAAKEIGIDAQHVKLPRSITEIELLSRLKKLNEDPSVHGIIVQ 106 (216)
Q Consensus 51 ~~~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq 106 (216)
+++-...+.+...++|++.|+++....-.. +.+...+.++.+- ...|||||+.
T Consensus 10 ~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~--~~~~~~~~~~~l~-~~~vdgiIi~ 62 (265)
T cd06299 10 RNPYFASLATAIQDAASAAGYSTIIGNSDE--NPETENRYLDNLL-SQRVDGIIVV 62 (265)
T ss_pred CCccHHHHHHHHHHHHHHcCCEEEEEeCCC--CHHHHHHHHHHHH-hcCCCEEEEc
Confidence 355556677888999999999888765433 3444455666654 3379999996
No 345
>TIGR01088 aroQ 3-dehydroquinate dehydratase, type II. This model specifies the type II enzyme. The type I enzyme, often found as part of a multifunctional protein, is described by TIGR01093.
Probab=51.45 E-value=50 Score=26.87 Aligned_cols=57 Identities=14% Similarity=0.349 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHcCcceEEEeCCCCCCHHHHHHHHHHhcCCCCccEEEEeCCCCCCCCCC--HHHHhhhc
Q psy7981 58 YIRMKMKAAKEIGIDAQHVKLPRSITEIELLSRLKKLNEDPSVHGIIVQMPLDSDNDIN--AMLVTDSV 124 (216)
Q Consensus 58 Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvqlPL~~P~~id--~~~i~~~I 124 (216)
..+.-.+.|++.|++++.+. +-.|-|+++.|.+.- .+++||++- |..+. .-.+.+++
T Consensus 29 i~~~~~~~a~~~g~~v~~~Q---SN~EGelId~i~~a~--~~~dgiIIN-----pga~THtSiAl~DAl 87 (141)
T TIGR01088 29 IVEIIETFAAQLNVELEFFQ---SNSEGQLIDKIHEAE--GQYDGIIIN-----PGALTHTSVALRDAL 87 (141)
T ss_pred HHHHHHHHHHHcCCEEEEEe---eCcHHHHHHHHHhcc--ccCCEEEEc-----ChHHhhhHHHHHHHH
Confidence 34566777888998877653 446899999999873 348998885 55553 34555555
No 346
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=51.38 E-value=19 Score=33.42 Aligned_cols=35 Identities=20% Similarity=0.213 Sum_probs=30.8
Q ss_pred CCCeEEEecCCCcccHHHHHHhhhCCCEEEEecCCC
Q psy7981 169 AGTNAVVLGRSKIVGTPAAELLKWKHATVTVCHSKT 204 (216)
Q Consensus 169 ~Gk~vvViGrS~~VG~Pla~lL~~~~ATVtichs~T 204 (216)
.+++|+|||-+. +|--+|..|.+.|..||+++...
T Consensus 156 ~~~~vvIIGgG~-~g~e~A~~l~~~g~~Vtli~~~~ 190 (438)
T PRK07251 156 LPERLGIIGGGN-IGLEFAGLYNKLGSKVTVLDAAS 190 (438)
T ss_pred cCCeEEEECCCH-HHHHHHHHHHHcCCeEEEEecCC
Confidence 478999999875 69999999999999999998754
No 347
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=51.32 E-value=77 Score=26.34 Aligned_cols=60 Identities=13% Similarity=0.140 Sum_probs=45.8
Q ss_pred EEEEEeCCCcchHHHHHHHHHHHHHcCcceEEEeCCCCCCHHHHHHHHHHhcCCCCccEEEE
Q psy7981 44 LAIVQVGGREDSNVYIRMKMKAAKEIGIDAQHVKLPRSITEIELLSRLKKLNEDPSVHGIIV 105 (216)
Q Consensus 44 LaiI~vg~~~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlv 105 (216)
.+.|..|++. +-.+.+.-....+++||.|+.......-|.+.+.+.+++.-+. .+.-||-
T Consensus 4 ~V~IIMGS~S-D~~~mk~Aa~~L~~fgi~ye~~VvSAHRTPe~m~~ya~~a~~~-g~~viIA 63 (162)
T COG0041 4 KVGIIMGSKS-DWDTMKKAAEILEEFGVPYEVRVVSAHRTPEKMFEYAEEAEER-GVKVIIA 63 (162)
T ss_pred eEEEEecCcc-hHHHHHHHHHHHHHcCCCeEEEEEeccCCHHHHHHHHHHHHHC-CCeEEEe
Confidence 5566678554 4456667788899999999999999999999999999877554 4544444
No 348
>cd06293 PBP1_LacI_like_11 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=51.19 E-value=99 Score=25.71 Aligned_cols=52 Identities=15% Similarity=0.095 Sum_probs=36.1
Q ss_pred CcchHHHHHHHHHHHHHcCcceEEEeCCCCCCHHHHHHHHHHhcCCCCccEEEEe
Q psy7981 52 REDSNVYIRMKMKAAKEIGIDAQHVKLPRSITEIELLSRLKKLNEDPSVHGIIVQ 106 (216)
Q Consensus 52 ~~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq 106 (216)
++-.....+...++|++.|.++....... +++...+.++.+... .++||++.
T Consensus 11 ~~~~~~~~~gi~~~~~~~gy~v~~~~~~~--~~~~~~~~i~~~~~~-~~dgiii~ 62 (269)
T cd06293 11 NPFFAELADAVEEEADARGLSLVLCATRN--RPERELTYLRWLDTN-HVDGLIFV 62 (269)
T ss_pred CCcHHHHHHHHHHHHHHCCCEEEEEeCCC--CHHHHHHHHHHHHHC-CCCEEEEe
Confidence 45556677889999999999987775543 334445555555433 58999997
No 349
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=51.06 E-value=34 Score=32.30 Aligned_cols=40 Identities=13% Similarity=0.184 Sum_probs=32.4
Q ss_pred hCCCCCCCeEEEecCC---------CcccHHHHHHhhhCCCEEEEecCC
Q psy7981 164 TNVTIAGTNAVVLGRS---------KIVGTPAAELLKWKHATVTVCHSK 203 (216)
Q Consensus 164 ~~i~l~Gk~vvViGrS---------~~VG~Pla~lL~~~~ATVtichs~ 203 (216)
++.+++|++|.|.|=+ +.-..++...|..+|+.|.+..-+
T Consensus 308 ~~~~~~~~~V~vlGlafK~~t~D~R~Spa~~ii~~L~~~g~~V~~~DP~ 356 (425)
T PRK15182 308 KGINVEGSSVLILGFTFKENCPDIRNTRIIDVVKELGKYSCKVDIFDPW 356 (425)
T ss_pred cCCCCCCCEEEEEEeEeCCCCCccccCcHHHHHHHHHhCCCEEEEECCC
Confidence 3567899999999932 344788999999999999988754
No 350
>cd08290 ETR 2-enoyl thioester reductase (ETR). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann f
Probab=50.92 E-value=38 Score=29.56 Aligned_cols=53 Identities=15% Similarity=0.146 Sum_probs=38.3
Q ss_pred ccCCHHHHHHHHHHhCCCCCCCeEEEecCCCcccHHHHHHhhhCCCEEEEecC
Q psy7981 150 IPCTPNGVLELIKRTNVTIAGTNAVVLGRSKIVGTPAAELLKWKHATVTVCHS 202 (216)
Q Consensus 150 ~PcTa~av~~lL~~~~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~ATVtichs 202 (216)
+||.....+..+....---.|.+|+|.|-+..||.-+..++...|++|++.-+
T Consensus 127 ~~~~~~ta~~~l~~~~~~~~g~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~ 179 (341)
T cd08290 127 LSVNPCTAYRLLEDFVKLQPGDWVIQNGANSAVGQAVIQLAKLLGIKTINVVR 179 (341)
T ss_pred hhccHHHHHHHHHhhcccCCCCEEEEccchhHHHHHHHHHHHHcCCeEEEEEc
Confidence 45444444444444332247999999999999999999999999999766644
No 351
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=50.74 E-value=42 Score=29.94 Aligned_cols=83 Identities=18% Similarity=0.147 Sum_probs=52.6
Q ss_pred CCCceEEEEEeCCCcchHHHHHHHHHHHHHcCcceEEEeCCCC----CCHHHHHHHHHHhcCCC---CccEEEEeCCCCC
Q psy7981 39 DFEPGLAIVQVGGREDSNVYIRMKMKAAKEIGIDAQHVKLPRS----ITEIELLSRLKKLNEDP---SVHGIIVQMPLDS 111 (216)
Q Consensus 39 ~~~P~LaiI~vg~~~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~----~~~~el~~~I~~lN~D~---~V~GIlvqlPL~~ 111 (216)
.+.-+++||.-....+=.-+++...+ -+-.++.+.+|.. -..+++.+.|+++|++. .+|.|+|-+==.+
T Consensus 12 ~~p~~I~vITs~~gAa~~D~~~~~~~----r~~~~~~~~~p~~vQG~~A~~~I~~al~~~~~~~~~~~~Dviii~RGGGs 87 (319)
T PF02601_consen 12 KFPKRIAVITSPTGAAIQDFLRTLKR----RNPIVEIILYPASVQGEGAAASIVSALRKANEMGQADDFDVIIIIRGGGS 87 (319)
T ss_pred CCCCEEEEEeCCchHHHHHHHHHHHH----hCCCcEEEEEeccccccchHHHHHHHHHHHHhccccccccEEEEecCCCC
Confidence 45568999887644444444444444 3333344444444 47889999999999987 8999999875422
Q ss_pred C---CCCCHHHHhhhcC
Q psy7981 112 D---NDINAMLVTDSVS 125 (216)
Q Consensus 112 P---~~id~~~i~~~I~ 125 (216)
- --+|++.+..+|.
T Consensus 88 ~eDL~~FN~e~varai~ 104 (319)
T PF02601_consen 88 IEDLWAFNDEEVARAIA 104 (319)
T ss_pred hHHhcccChHHHHHHHH
Confidence 1 1245666666664
No 352
>cd05280 MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone oxidoreductases. Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and so
Probab=50.74 E-value=36 Score=29.23 Aligned_cols=34 Identities=24% Similarity=0.171 Sum_probs=29.5
Q ss_pred CCCeEEEecCCCcccHHHHHHhhhCCCEEEEecC
Q psy7981 169 AGTNAVVLGRSKIVGTPAAELLKWKHATVTVCHS 202 (216)
Q Consensus 169 ~Gk~vvViGrS~~VG~Pla~lL~~~~ATVtichs 202 (216)
.|.+|+|.|-+..+|.-+..+....|+.|+++.+
T Consensus 146 ~~~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~ 179 (325)
T cd05280 146 EDGPVLVTGATGGVGSIAVAILAKLGYTVVALTG 179 (325)
T ss_pred CCCEEEEECCccHHHHHHHHHHHHcCCEEEEEeC
Confidence 4578999999999999999999999999876644
No 353
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=50.49 E-value=43 Score=30.56 Aligned_cols=53 Identities=25% Similarity=0.128 Sum_probs=38.2
Q ss_pred cccCCHHHHHHHHHHhCCC-CCCCeEEEecCCCcccHHHHHHhhhCCCEEEEecC
Q psy7981 149 FIPCTPNGVLELIKRTNVT-IAGTNAVVLGRSKIVGTPAAELLKWKHATVTVCHS 202 (216)
Q Consensus 149 ~~PcTa~av~~lL~~~~i~-l~Gk~vvViGrS~~VG~Pla~lL~~~~ATVtichs 202 (216)
.++|.....+..+.+.+.. -.|..|+|.|- .-||.-...+....||.|++.-+
T Consensus 157 ~l~~~~~ta~~al~~~~~~~~~g~~VlV~G~-G~vG~~avq~Ak~~Ga~Vi~~~~ 210 (375)
T PLN02178 157 PLLCAGITVYSPMKYYGMTKESGKRLGVNGL-GGLGHIAVKIGKAFGLRVTVISR 210 (375)
T ss_pred hhhccchHHHHHHHHhCCCCCCCCEEEEEcc-cHHHHHHHHHHHHcCCeEEEEeC
Confidence 3455555555555555543 47999999996 57899999999999999877643
No 354
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=50.34 E-value=20 Score=35.43 Aligned_cols=37 Identities=22% Similarity=0.259 Sum_probs=30.4
Q ss_pred CCCCeEEEecCCCcccHHHHHHhhhCCC-EEEEecCCCC
Q psy7981 168 IAGTNAVVLGRSKIVGTPAAELLKWKHA-TVTVCHSKTK 205 (216)
Q Consensus 168 l~Gk~vvViGrS~~VG~Pla~lL~~~~A-TVtichs~T~ 205 (216)
..||+|+|||-+. +|.-.+..+++.|| .||+.+..+.
T Consensus 449 ~~gk~vvViGgG~-~a~d~a~~~~~~Ga~~Vt~v~rr~~ 486 (639)
T PRK12809 449 VEGKRVVVLGGGD-TTMDCLRTSIRLNAASVTCAYRRDE 486 (639)
T ss_pred CCCCeEEEECCcH-HHHHHHHHHHHcCCCeEEEeeecCc
Confidence 5799999999877 58888888888887 7999987653
No 355
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.
Probab=50.25 E-value=19 Score=31.44 Aligned_cols=34 Identities=21% Similarity=0.269 Sum_probs=29.4
Q ss_pred CeEEEecCCCcccHHHHHHhhhCCCEEEEecCCCC
Q psy7981 171 TNAVVLGRSKIVGTPAAELLKWKHATVTVCHSKTK 205 (216)
Q Consensus 171 k~vvViGrS~~VG~Pla~lL~~~~ATVtichs~T~ 205 (216)
-+++|+|.+.+ ++|++.++..-|..||+|..+..
T Consensus 101 ~~L~IfGaG~v-a~~la~la~~lGf~V~v~D~R~~ 134 (246)
T TIGR02964 101 PHVVLFGAGHV-GRALVRALAPLPCRVTWVDSREA 134 (246)
T ss_pred CEEEEECCcHH-HHHHHHHHhcCCCEEEEEeCCcc
Confidence 47899998765 99999999999999999987643
No 356
>cd06270 PBP1_GalS_like Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalS is a dimeric protein like GalR,and its major role is in regulating expression of the high-affinity galactose transporter encoded by the mgl operon, whereas GalR is the exclusive regulator of galactose permease, the low-affinity galactose transporter. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are homologous to the periplasmic sugar bindi
Probab=50.23 E-value=86 Score=26.05 Aligned_cols=54 Identities=9% Similarity=-0.038 Sum_probs=39.3
Q ss_pred CCcchHHHHHHHHHHHHHcCcceEEEeCCCCCCHHHHHHHHHHhcCCCCccEEEEeC
Q psy7981 51 GREDSNVYIRMKMKAAKEIGIDAQHVKLPRSITEIELLSRLKKLNEDPSVHGIIVQM 107 (216)
Q Consensus 51 ~~~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvql 107 (216)
+++-...+.+...+.|++.|..+....-+. .++.-.+.|+.+.. ..|+||++.-
T Consensus 10 ~~~~~~~~~~g~~~~a~~~g~~~~~~~~~~--~~~~~~~~i~~~~~-~~vdgii~~~ 63 (268)
T cd06270 10 DGPFFGPLLSGVESVARKAGKHLIITAGHH--SAEKEREAIEFLLE-RRCDALILHS 63 (268)
T ss_pred cCcchHHHHHHHHHHHHHCCCEEEEEeCCC--chHHHHHHHHHHHH-cCCCEEEEec
Confidence 466777788889999999999988755432 34445567766654 4799999963
No 357
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=49.99 E-value=25 Score=32.76 Aligned_cols=35 Identities=23% Similarity=0.227 Sum_probs=30.5
Q ss_pred CCCeEEEecCCCcccHHHHHHhhhCCCEEEEecCCC
Q psy7981 169 AGTNAVVLGRSKIVGTPAAELLKWKHATVTVCHSKT 204 (216)
Q Consensus 169 ~Gk~vvViGrS~~VG~Pla~lL~~~~ATVtichs~T 204 (216)
.+++++|||-+. +|--+|..|.+.|..||+++...
T Consensus 171 ~~~~vvVvGgG~-~g~E~A~~l~~~g~~Vtli~~~~ 205 (462)
T PRK06416 171 VPKSLVVIGGGY-IGVEFASAYASLGAEVTIVEALP 205 (462)
T ss_pred cCCeEEEECCCH-HHHHHHHHHHHcCCeEEEEEcCC
Confidence 468999999775 59999999999999999998654
No 358
>cd06353 PBP1_BmpA_Med_like Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Med, a cell-surface localized protein, which regulates the competence transcription factor gene comK in Bacillus subtilis, lacks the DNA binding domain when compared with structures of transcription regulators from the LacI family. Nevertheless, Med has significant overall sequence homology to various periplasmic substrate-binding proteins. Moreover, the structure of Med shows a striking similarity to PnrA, a periplasmic nucleoside binding protein of an ATP-binding cassette transport system. Members of this group contain the type I periplasmic sugar-binding protein-like fold.
Probab=49.94 E-value=82 Score=27.20 Aligned_cols=61 Identities=20% Similarity=0.151 Sum_probs=42.5
Q ss_pred eEEEEEeCCCcch---HHHHHHHHHHHHHcCcceEEEeCCCCCCHHHHHHHHHHhcCCCCccEEEEe
Q psy7981 43 GLAIVQVGGREDS---NVYIRMKMKAAKEIGIDAQHVKLPRSITEIELLSRLKKLNEDPSVHGIIVQ 106 (216)
Q Consensus 43 ~LaiI~vg~~~as---~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq 106 (216)
+++++..|.-.+. ....+..++++++.|+++..++-.. ++++..+.|+++-+ ...+.|+..
T Consensus 1 kva~l~~g~~~D~~~n~~~~~G~~~~~~~~gv~~~~~e~~~--~~~~~~~~i~~~~~-~g~dlIi~~ 64 (258)
T cd06353 1 KVAFVYVGPIGDQGWNYAHDEGRKAAEKALGVEVTYVENVP--EGADAERVLRELAA-QGYDLIFGT 64 (258)
T ss_pred CEEEEEeCCCCccchhHHHHHHHHHHHHhcCCeEEEEecCC--chHhHHHHHHHHHH-cCCCEEEEC
Confidence 3567777654332 3334777888888999988876443 56788888888854 478888883
No 359
>cd06366 PBP1_GABAb_receptor Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA). Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA). GABA is the major inhibitory neurotransmitter in the mammalian CNS and, like glutamate and other transmitters, acts via both ligand gated ion channels (GABAa receptors) and G-protein coupled receptors (GABAb). GABAa receptors are members of the ionotropic receptor superfamily which includes alpha-adrenergic and glycine receptors. The GABAb receptor is a member of a receptor superfamily which includes the mGlu receptors. The GABAb receptor is coupled to G alpha_i proteins, and activation causes a decrease in calcium, an increase in potassium membrane conductance, and inhibition of cAMP formation. The response is thus inhibitory and leads to hyperpolarization and decreased neurotransmitter release, for example.
Probab=49.90 E-value=1.8e+02 Score=25.49 Aligned_cols=44 Identities=9% Similarity=0.074 Sum_probs=29.4
Q ss_pred HHHHHHHHHHhCCCCCCCeEEEecCCCcccHHHH----HHhhhCCCEEEEec
Q psy7981 154 PNGVLELIKRTNVTIAGTNAVVLGRSKIVGTPAA----ELLKWKHATVTVCH 201 (216)
Q Consensus 154 a~av~~lL~~~~i~l~Gk~vvViGrS~~VG~Pla----~lL~~~~ATVtich 201 (216)
+.++.+++++++ -++|.+|....--|+.++ ..|.+.|.+|+.--
T Consensus 123 ~~a~~~~~~~~~----~~~v~ii~~~~~~g~~~~~~~~~~~~~~g~~v~~~~ 170 (350)
T cd06366 123 NPAIAALLKKFG----WRRVATIYEDDDYGSGGLPDLVDALQEAGIEISYRA 170 (350)
T ss_pred HHHHHHHHHHCC----CcEEEEEEEcCcccchhHHHHHHHHHHcCCEEEEEe
Confidence 456778887764 378999987666665554 44455687876543
No 360
>KOG1504|consensus
Probab=49.85 E-value=17 Score=32.87 Aligned_cols=77 Identities=14% Similarity=0.103 Sum_probs=51.1
Q ss_pred cCCCCCcccCCccchhHhhcCCCCCcccCCHHH-HHHHHHHhCCCCCCCeEEEecCCCcccHHHHHHhhhCCCEEEEe
Q psy7981 124 VSPEKDVDGLNTINEGRVAIGDMNGFIPCTPNG-VLELIKRTNVTIAGTNAVVLGRSKIVGTPAAELLKWKHATVTVC 200 (216)
Q Consensus 124 I~p~KDVDG~~~~n~G~l~~~~~~~~~PcTa~a-v~~lL~~~~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~ATVtic 200 (216)
+.-..|++-|.-+..=-+..|-...|.||-+.| .+.++++||-.++|-+++-||-.+.|=--+.+.-++-|..+.+.
T Consensus 143 V~khsDi~tlak~sSvPiINgL~D~~HPlQ~laD~LTi~E~f~ks~~glkvawiGD~NNvlhs~mia~ak~gih~s~a 220 (346)
T KOG1504|consen 143 VNKHSDILTLAKYSSVPIINGLCDHFHPLQILADLLTIIEHFGKSVEGLKVAWIGDGNNVLHSWMIAAAKFGIHFSCA 220 (346)
T ss_pred HhhhhhHHHHhhccCCceecccccccChHHHHHHHHHHHHHHhccccccEEEEEccccHHHHHHHHHhhhcceEEEec
Confidence 334445544443332233334213689998888 78899999999999999999999988776655555555554443
No 361
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=49.75 E-value=18 Score=35.97 Aligned_cols=34 Identities=26% Similarity=0.384 Sum_probs=30.5
Q ss_pred CCCeEEEecCCCcccHHHHHHhhhCCCEEEEecCC
Q psy7981 169 AGTNAVVLGRSKIVGTPAAELLKWKHATVTVCHSK 203 (216)
Q Consensus 169 ~Gk~vvViGrS~~VG~Pla~lL~~~~ATVtichs~ 203 (216)
.||+|+|||.+.. |.-.|..|.++|..||++...
T Consensus 192 ~~k~VaIIGaGpA-Gl~aA~~La~~G~~Vtv~e~~ 225 (652)
T PRK12814 192 SGKKVAIIGAGPA-GLTAAYYLLRKGHDVTIFDAN 225 (652)
T ss_pred CCCEEEEECCCHH-HHHHHHHHHHCCCcEEEEecC
Confidence 6899999997766 999999999999999999754
No 362
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=49.53 E-value=29 Score=36.71 Aligned_cols=47 Identities=28% Similarity=0.295 Sum_probs=34.6
Q ss_pred HHHHHHh-C---CCCCCCeEEEecCCCcccHHHHHHhhhC-CC-EEEEecCCCC
Q psy7981 158 LELIKRT-N---VTIAGTNAVVLGRSKIVGTPAAELLKWK-HA-TVTVCHSKTK 205 (216)
Q Consensus 158 ~~lL~~~-~---i~l~Gk~vvViGrS~~VG~Pla~lL~~~-~A-TVtichs~T~ 205 (216)
+++|+.+ + ..-.||+|||||-++ +|.-+|..+.+. ++ .||+++..+.
T Consensus 652 ldfL~~~k~~~~~~~~GKrVVVIGGGn-VAmD~Ar~a~RlgGakeVTLVyRr~~ 704 (1019)
T PRK09853 652 LPFLEEYKNKGTALKLGKHVVVVGGGN-TAMDAARAALRVPGVEKVTVVYRRTK 704 (1019)
T ss_pred HHHHHHHhhhcccccCCCEEEEECCCh-HHHHHHHHHHhcCCCceEEEEEccCc
Confidence 4666665 1 223599999999885 688888877766 43 8999998763
No 363
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=49.34 E-value=13 Score=31.60 Aligned_cols=42 Identities=10% Similarity=0.095 Sum_probs=33.5
Q ss_pred CCCCCCeEEEecCCCcccHHHHHHhhhCCCE-EEEecCCCCChH
Q psy7981 166 VTIAGTNAVVLGRSKIVGTPAAELLKWKHAT-VTVCHSKTKNIQ 208 (216)
Q Consensus 166 i~l~Gk~vvViGrS~~VG~Pla~lL~~~~AT-Vtichs~T~~l~ 208 (216)
-.|+.++|+|||-+.+ |.+++..|...|.. +++++-.+-+..
T Consensus 24 ~~L~~~~V~ViG~Ggl-Gs~ia~~La~~Gvg~i~lvD~D~ve~s 66 (212)
T PRK08644 24 EKLKKAKVGIAGAGGL-GSNIAVALARSGVGNLKLVDFDVVEPS 66 (212)
T ss_pred HHHhCCCEEEECcCHH-HHHHHHHHHHcCCCeEEEEeCCEeccc
Confidence 3468999999998765 99999999998876 888887654333
No 364
>cd01539 PBP1_GGBP Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. GGBP is a member of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic GGBP is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=49.30 E-value=78 Score=27.39 Aligned_cols=55 Identities=9% Similarity=-0.045 Sum_probs=33.0
Q ss_pred cchHHHHHHHHHHHHHcCcceEEEeCCCCCCHHHHHHHHHHhcCCCCccEEEEeCCC
Q psy7981 53 EDSNVYIRMKMKAAKEIGIDAQHVKLPRSITEIELLSRLKKLNEDPSVHGIIVQMPL 109 (216)
Q Consensus 53 ~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvqlPL 109 (216)
+--....+...++|++.|..+....++.+.+.+.-.+.++.+... .|+||++. |.
T Consensus 12 ~~~~~~~~gi~~~a~~~~~g~~~~~~~~~~~~~~q~~~i~~l~~~-~vdgiii~-~~ 66 (303)
T cd01539 12 TFISLVRKNLEDIQKENGGKVEFTFYDAKNNQSTQNEQIDTALAK-GVDLLAVN-LV 66 (303)
T ss_pred hHHHHHHHHHHHHHHhhCCCeeEEEecCCCCHHHHHHHHHHHHHc-CCCEEEEe-cC
Confidence 333444577888999943334444445555555555666665433 79999984 54
No 365
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=49.10 E-value=20 Score=37.68 Aligned_cols=37 Identities=22% Similarity=0.274 Sum_probs=31.0
Q ss_pred CCCCeEEEecCCCcccHHHHHHhhhCCC-EEEEecCCCC
Q psy7981 168 IAGTNAVVLGRSKIVGTPAAELLKWKHA-TVTVCHSKTK 205 (216)
Q Consensus 168 l~Gk~vvViGrS~~VG~Pla~lL~~~~A-TVtichs~T~ 205 (216)
..||+|+|||-++ +|.-.+..+.+.|| .||+.+.++.
T Consensus 569 ~~Gk~VvVIGgG~-tA~D~A~~a~rlGa~~Vtiv~rr~~ 606 (1006)
T PRK12775 569 SLGKSVVVIGAGN-TAMDCLRVAKRLGAPTVRCVYRRSE 606 (1006)
T ss_pred cCCCEEEEECCcH-HHHHHHHHHHHcCCCEEEEEeecCc
Confidence 4799999999987 68888889888898 5888887654
No 366
>PRK08328 hypothetical protein; Provisional
Probab=49.06 E-value=21 Score=30.66 Aligned_cols=46 Identities=15% Similarity=0.317 Sum_probs=36.1
Q ss_pred CCCCCeEEEecCCCcccHHHHHHhhhCCC-EEEEecCCCCChHHHHhc
Q psy7981 167 TIAGTNAVVLGRSKIVGTPAAELLKWKHA-TVTVCHSKTKNIQDVVKS 213 (216)
Q Consensus 167 ~l~Gk~vvViGrS~~VG~Pla~lL~~~~A-TVtichs~T~~l~~~~k~ 213 (216)
.+++++|+|||-+.+ |.+++..|...|. .+++++..+-.+...-||
T Consensus 24 ~L~~~~VlIiG~GGl-Gs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq 70 (231)
T PRK08328 24 KLKKAKVAVVGVGGL-GSPVAYYLAAAGVGRILLIDEQTPELSNLNRQ 70 (231)
T ss_pred HHhCCcEEEECCCHH-HHHHHHHHHHcCCCEEEEEcCCccChhhhccc
Confidence 468899999999976 9999999999885 488887766555554443
No 367
>TIGR02824 quinone_pig3 putative NAD(P)H quinone oxidoreductase, PIG3 family. Members of this family are putative quinone oxidoreductases that belong to the broader superfamily (modeled by Pfam pfam00107) of zinc-dependent alcohol (of medium chain length) dehydrogenases and quinone oxiooreductases. The alignment shows no motif of conserved Cys residues as are found in zinc-binding members of the superfamily, and members are likely to be quinone oxidoreductases instead. A member of this family in Homo sapiens, PIG3, is induced by p53 but is otherwise uncharacterized.
Probab=49.02 E-value=45 Score=28.21 Aligned_cols=35 Identities=29% Similarity=0.273 Sum_probs=31.4
Q ss_pred CCCCeEEEecCCCcccHHHHHHhhhCCCEEEEecC
Q psy7981 168 IAGTNAVVLGRSKIVGTPAAELLKWKHATVTVCHS 202 (216)
Q Consensus 168 l~Gk~vvViGrS~~VG~Pla~lL~~~~ATVtichs 202 (216)
..|..++|.|-+.-+|.-+..++...|+.|+.+..
T Consensus 138 ~~~~~vlv~g~~~~~g~~~~~~a~~~g~~v~~~~~ 172 (325)
T TIGR02824 138 KAGETVLIHGGASGIGTTAIQLAKAFGARVFTTAG 172 (325)
T ss_pred CCCCEEEEEcCcchHHHHHHHHHHHcCCEEEEEeC
Confidence 36899999999999999999999999999988865
No 368
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=49.02 E-value=22 Score=33.03 Aligned_cols=36 Identities=19% Similarity=0.187 Sum_probs=31.4
Q ss_pred CCCCeEEEecCCCcccHHHHHHhhhCCCEEEEecCCC
Q psy7981 168 IAGTNAVVLGRSKIVGTPAAELLKWKHATVTVCHSKT 204 (216)
Q Consensus 168 l~Gk~vvViGrS~~VG~Pla~lL~~~~ATVtichs~T 204 (216)
-.+++++|||-+. +|.-+|..|.+.+..||+++...
T Consensus 167 ~~~k~v~VIGgG~-~g~E~A~~l~~~g~~Vtli~~~~ 202 (460)
T PRK06292 167 KLPKSLAVIGGGV-IGLELGQALSRLGVKVTVFERGD 202 (460)
T ss_pred ccCCeEEEECCCH-HHHHHHHHHHHcCCcEEEEecCC
Confidence 4579999999775 59999999999999999998764
No 369
>PRK09701 D-allose transporter subunit; Provisional
Probab=48.97 E-value=1e+02 Score=26.86 Aligned_cols=63 Identities=16% Similarity=0.093 Sum_probs=41.1
Q ss_pred eEEEEEeC-CCcchHHHHHHHHHHHHHcCcceEEEeCCCCCCHHHHHHHHHHhcCCCCccEEEEe
Q psy7981 43 GLAIVQVG-GREDSNVYIRMKMKAAKEIGIDAQHVKLPRSITEIELLSRLKKLNEDPSVHGIIVQ 106 (216)
Q Consensus 43 ~LaiI~vg-~~~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq 106 (216)
.+++|.-. .++-.....+...+.+++.|+.+..+..+..-+.++-.+.|+.+-.. .++||++.
T Consensus 26 ~Igvi~~~~~~~f~~~~~~gi~~~a~~~g~~v~~~~~~~~~~~~~~~~~i~~l~~~-~vDgiIi~ 89 (311)
T PRK09701 26 EYAVVLKTLSNPFWVDMKKGIEDEAKTLGVSVDIFASPSEGDFQSQLQLFEDLSNK-NYKGIAFA 89 (311)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHc-CCCEEEEe
Confidence 45555432 23334444577788899999999887555444555666667666433 59999996
No 370
>cd06284 PBP1_LacI_like_6 Ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group includes the ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors and are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=48.62 E-value=1.1e+02 Score=25.14 Aligned_cols=55 Identities=15% Similarity=0.021 Sum_probs=36.6
Q ss_pred CCcchHHHHHHHHHHHHHcCcceEEEeCCCCCCHHHHHHHHHHhcCCCCccEEEEeCC
Q psy7981 51 GREDSNVYIRMKMKAAKEIGIDAQHVKLPRSITEIELLSRLKKLNEDPSVHGIIVQMP 108 (216)
Q Consensus 51 ~~~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvqlP 108 (216)
+++--........++|++.|+.+....-. -+++...+.++.+... +|+||++.-+
T Consensus 10 ~~~~~~~~~~~i~~~~~~~g~~~~~~~~~--~~~~~~~~~~~~~~~~-~vdgiii~~~ 64 (267)
T cd06284 10 ANPFFSEILKGIEDEAREAGYGVLLGDTR--SDPEREQEYLDLLRRK-QADGIILLDG 64 (267)
T ss_pred CCccHHHHHHHHHHHHHHcCCeEEEecCC--CChHHHHHHHHHHHHc-CCCEEEEecC
Confidence 45555566688899999999988665433 3344445556655443 7899999544
No 371
>cd01542 PBP1_TreR_like Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of TreR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding wh
Probab=48.53 E-value=64 Score=26.58 Aligned_cols=54 Identities=17% Similarity=0.163 Sum_probs=38.4
Q ss_pred CcchHHHHHHHHHHHHHcCcceEEEeCCCCCCHHHHHHHHHHhcCCCCccEEEEeCC
Q psy7981 52 REDSNVYIRMKMKAAKEIGIDAQHVKLPRSITEIELLSRLKKLNEDPSVHGIIVQMP 108 (216)
Q Consensus 52 ~~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvqlP 108 (216)
++-.....+...++|++.|.++.... .+-+.++..+.|+++.. .+++||++.-+
T Consensus 11 ~~~~~~~~~gi~~~~~~~g~~~~~~~--~~~~~~~~~~~i~~l~~-~~~dgii~~~~ 64 (259)
T cd01542 11 SFSTSRTVKGILAALYENGYQMLLMN--TNFSIEKEIEALELLAR-QKVDGIILLAT 64 (259)
T ss_pred cchHHHHHHHHHHHHHHCCCEEEEEe--CCCCHHHHHHHHHHHHh-cCCCEEEEeCC
Confidence 34445567778889999998886653 33445666778888764 58999999743
No 372
>cd06280 PBP1_LacI_like_4 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=48.53 E-value=1.5e+02 Score=24.62 Aligned_cols=54 Identities=19% Similarity=0.135 Sum_probs=37.6
Q ss_pred CcchHHHHHHHHHHHHHcCcceEEEeCCCCCCHHHHHHHHHHhcCCCCccEEEEeCCC
Q psy7981 52 REDSNVYIRMKMKAAKEIGIDAQHVKLPRSITEIELLSRLKKLNEDPSVHGIIVQMPL 109 (216)
Q Consensus 52 ~~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvqlPL 109 (216)
++-...+.+.....|++.|..+...... .++++..+.++.+... .++||++. |.
T Consensus 11 ~~~~~~~~~~i~~~~~~~g~~~~~~~~~--~~~~~~~~~i~~l~~~-~~dgiii~-~~ 64 (263)
T cd06280 11 NPFFTAVSRAVEDAAYRAGLRVILCNTD--EDPEKEAMYLELMEEE-RVTGVIFA-PT 64 (263)
T ss_pred cccHHHHHHHHHHHHHHCCCEEEEEeCC--CCHHHHHHHHHHHHhC-CCCEEEEe-CC
Confidence 4555667788999999999888655333 3445555666666643 69999995 44
No 373
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=48.31 E-value=3e+02 Score=27.56 Aligned_cols=117 Identities=15% Similarity=0.213 Sum_probs=78.1
Q ss_pred HHHHHHHcCcceEEEeCCCCCCHHHHHHHHHHhcCCCCccEEEEeCCCCCCCCCCHHHHhhhcCCCCCcccCCccchhHh
Q psy7981 62 KMKAAKEIGIDAQHVKLPRSITEIELLSRLKKLNEDPSVHGIIVQMPLDSDNDINAMLVTDSVSPEKDVDGLNTINEGRV 141 (216)
Q Consensus 62 k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvqlPL~~P~~id~~~i~~~I~p~KDVDG~~~~n~G~l 141 (216)
.....++.+++--.+..| +.++++..+.++.+|..+ +. +. =| |+..| +.+.....+||+ .--|
T Consensus 169 i~~~v~~~~~~~iiiAip-s~~~~~~~~i~~~l~~~~-~~---v~-~l--P~~~~---l~~~~~~lreI~------ieDL 231 (588)
T COG1086 169 IERVVEELGIQLILIAIP-SASQEERRRILLRLARTG-IA---VR-IL--PQLTD---LKDLNGQLREIE------IEDL 231 (588)
T ss_pred HHHHHHHcCCceEEEecC-CCCHHHHHHHHHHHHhcC-Cc---EE-ec--CcHHH---HHHhccccccCC------HHHH
Confidence 667788888887777777 578889999999998886 22 22 13 44333 333455555554 2233
Q ss_pred hcCCCCCcccCCHHHHHHHHHHhCCCCCCCeEEEecCCCcccHHHHHHhhhCCCEEEEecCCCC
Q psy7981 142 AIGDMNGFIPCTPNGVLELIKRTNVTIAGTNAVVLGRSKIVGTPAAELLKWKHATVTVCHSKTK 205 (216)
Q Consensus 142 ~~~~~~~~~PcTa~av~~lL~~~~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~ATVtichs~T~ 205 (216)
. | +..+|---..+... +.||+|.|-|.+..+|.-+...+++.|....+.-++..
T Consensus 232 L-g--R~pV~~d~~~i~~~-------~~gK~vLVTGagGSiGsel~~qil~~~p~~i~l~~~~E 285 (588)
T COG1086 232 L-G--RPPVALDTELIGAM-------LTGKTVLVTGGGGSIGSELCRQILKFNPKEIILFSRDE 285 (588)
T ss_pred h-C--CCCCCCCHHHHHhH-------cCCCEEEEeCCCCcHHHHHHHHHHhcCCCEEEEecCch
Confidence 2 2 22333333333333 47999999999999999999999999888777666654
No 374
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=48.29 E-value=21 Score=34.24 Aligned_cols=35 Identities=29% Similarity=0.239 Sum_probs=31.0
Q ss_pred CCCCeEEEecCCCcccHHHHHHhhhCCCEEEEecCC
Q psy7981 168 IAGTNAVVLGRSKIVGTPAAELLKWKHATVTVCHSK 203 (216)
Q Consensus 168 l~Gk~vvViGrS~~VG~Pla~lL~~~~ATVtichs~ 203 (216)
..|++|+|||.+. +|--+|..|...+..||+.+..
T Consensus 350 ~~~k~VvViGgG~-~g~E~A~~L~~~g~~Vtli~~~ 384 (515)
T TIGR03140 350 FKGKDVAVIGGGN-SGIEAAIDLAGIVRHVTVLEFA 384 (515)
T ss_pred cCCCEEEEECCcH-HHHHHHHHHHhcCcEEEEEEeC
Confidence 4699999999997 5999999999889999999864
No 375
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=48.28 E-value=36 Score=31.60 Aligned_cols=48 Identities=8% Similarity=-0.016 Sum_probs=36.8
Q ss_pred HHHHHHhCCCCCCCeEEEecCCCcccHHHHHHhhhCCCEEEEecCCCCC
Q psy7981 158 LELIKRTNVTIAGTNAVVLGRSKIVGTPAAELLKWKHATVTVCHSKTKN 206 (216)
Q Consensus 158 ~~lL~~~~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~ATVtichs~T~~ 206 (216)
.+.++.|.-.|.||+|+|.|-+..+ .+++.+|...|..|..+.+.+.+
T Consensus 275 ~~~l~~~~~~l~gkrv~i~~~~~~~-~~la~~l~elGm~v~~~~~~~~~ 322 (410)
T cd01968 275 RPELAPYRARLEGKKAALYTGGVKS-WSLVSALQDLGMEVVATGTQKGT 322 (410)
T ss_pred HHHHHHHHHHhCCCEEEEEcCCchH-HHHHHHHHHCCCEEEEEecccCC
Confidence 3444445556899999999977665 88999998899999999765544
No 376
>KOG1429|consensus
Probab=48.26 E-value=28 Score=31.98 Aligned_cols=44 Identities=9% Similarity=0.115 Sum_probs=38.0
Q ss_pred HHHhCCCCCCCeEEEecCCCcccHHHHHHhhhCCCEEEEecCCC
Q psy7981 161 IKRTNVTIAGTNAVVLGRSKIVGTPAAELLKWKHATVTVCHSKT 204 (216)
Q Consensus 161 L~~~~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~ATVtichs~T 204 (216)
++.-..+..+++++|.|....||.=|+--|+.++..|.+...+-
T Consensus 18 ~~~~~~p~~~lrI~itGgaGFIgSHLvdkLm~egh~VIa~Dn~f 61 (350)
T KOG1429|consen 18 LREQVKPSQNLRILITGGAGFIGSHLVDKLMTEGHEVIALDNYF 61 (350)
T ss_pred hhhcccCCCCcEEEEecCcchHHHHHHHHHHhcCCeEEEEeccc
Confidence 33345677889999999999999999999999999999988764
No 377
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=48.22 E-value=89 Score=23.96 Aligned_cols=42 Identities=21% Similarity=0.253 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHcCcceEEEeCC-CCCCHHHHHHHHHHhcCCC
Q psy7981 57 VYIRMKMKAAKEIGIDAQHVKLP-RSITEIELLSRLKKLNEDP 98 (216)
Q Consensus 57 ~Yv~~k~k~a~~~Gi~~~~~~l~-~~~~~~el~~~I~~lN~D~ 98 (216)
-......++|++.|+.|.++.+. ...+++.+....+.++.-+
T Consensus 44 p~~~~~~~~a~~~Gl~y~~iPv~~~~~~~~~v~~f~~~l~~~~ 86 (110)
T PF04273_consen 44 PSSAEEAAAAEALGLQYVHIPVDGGAITEEDVEAFADALESLP 86 (110)
T ss_dssp T-HHCHHHHHHHCT-EEEE----TTT--HHHHHHHHHHHHTTT
T ss_pred CCHHHHHHHHHHcCCeEEEeecCCCCCCHHHHHHHHHHHHhCC
Confidence 34445678999999999988876 4567777777777776544
No 378
>cd06297 PBP1_LacI_like_12 Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs. Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=48.21 E-value=90 Score=26.20 Aligned_cols=52 Identities=15% Similarity=-0.003 Sum_probs=36.1
Q ss_pred CcchHHHHHHHHHHHHHcCcceEEEeCCCCCCHHHHHHHHHHhcCCCCccEEEEe
Q psy7981 52 REDSNVYIRMKMKAAKEIGIDAQHVKLPRSITEIELLSRLKKLNEDPSVHGIIVQ 106 (216)
Q Consensus 52 ~~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq 106 (216)
++--...++...+.|++.|.+...+....+ ++..+.+.++....+|+||++.
T Consensus 11 ~~~~~~~~~~i~~~~~~~gy~~~~~~~~~~---~~~~~~~~~~l~~~~vdgvi~~ 62 (269)
T cd06297 11 TEFYRRLLEGIEGALLEQRYDLALFPLLSL---ARLKRYLESTTLAYLTDGLLLA 62 (269)
T ss_pred ChhHHHHHHHHHHHHHHCCCEEEEEeCCCc---HHHHHHHHHHHHhcCCCEEEEe
Confidence 344455568889999999999998876532 2334555544445579999997
No 379
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=48.15 E-value=57 Score=28.62 Aligned_cols=36 Identities=28% Similarity=0.368 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHcCcceEEEeCCCC-------CCHHHHHHHHHH
Q psy7981 58 YIRMKMKAAKEIGIDAQHVKLPRS-------ITEIELLSRLKK 93 (216)
Q Consensus 58 Yv~~k~k~a~~~Gi~~~~~~l~~~-------~~~~el~~~I~~ 93 (216)
-...|.++|+++||.+..++=|+. .+-+|+++.+.+
T Consensus 203 g~~eKi~AA~~lgi~vivI~RP~~~~~~~~~~~~~e~~~~l~~ 245 (248)
T PRK08057 203 GTEAKLEAARELGIPVVMIARPALPYADREFEDVAELVAWLRH 245 (248)
T ss_pred hhHHHHHHHHHcCCeEEEEeCCCCCCCCcccCCHHHHHHHHHH
Confidence 445677777777777777776642 244555555543
No 380
>PF10881 DUF2726: Protein of unknown function (DUF2726); InterPro: IPR024402 This domain found in bacterial proteins has no known function.
Probab=48.12 E-value=1.2e+02 Score=23.08 Aligned_cols=55 Identities=24% Similarity=0.193 Sum_probs=39.6
Q ss_pred CCCceEEEEEeCCCcc---hHHHHHHHHHHHHHcCcceEEEeCCCCCCHHHHHHHHHH
Q psy7981 39 DFEPGLAIVQVGGRED---SNVYIRMKMKAAKEIGIDAQHVKLPRSITEIELLSRLKK 93 (216)
Q Consensus 39 ~~~P~LaiI~vg~~~a---s~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~ 93 (216)
+..|.++|=+-|.... ...==+.|.+.|+.+||.+-.+.-.+.-+.+++.+.|++
T Consensus 67 ~~~p~~vIEld~~~h~~~~~~~rD~~k~~~l~~agiplir~~~~~~~~~~~l~~~l~~ 124 (126)
T PF10881_consen 67 DGRPVAVIELDGSSHDQEKRQERDEFKDRVLKKAGIPLIRISPKDSYSVEELRRDLRE 124 (126)
T ss_pred CCcEEEEEEecCccccchhhHHHHHHHHHHHHHCCCCEEEEeCCCCCCHHHHHHHHHH
Confidence 5678777766665222 111124578899999999999988888888999888864
No 381
>cd01574 PBP1_LacI Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of LacI is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=47.93 E-value=1e+02 Score=25.39 Aligned_cols=57 Identities=25% Similarity=0.325 Sum_probs=37.4
Q ss_pred CCcchHHHHHHHHHHHHHcCcceEEEeCCCCCCHHHHHHHHHHhcCCCCccEEEEeCCC
Q psy7981 51 GREDSNVYIRMKMKAAKEIGIDAQHVKLPRSITEIELLSRLKKLNEDPSVHGIIVQMPL 109 (216)
Q Consensus 51 ~~~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvqlPL 109 (216)
+++-...+.+...++|++.|..........+ ..+...+.++.+- ...+|||++..+-
T Consensus 10 ~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~-~~~vdgiii~~~~ 66 (264)
T cd01574 10 ALHGPSSTLAAIESAAREAGYAVTLSMLAEA-DEEALRAAVRRLL-AQRVDGVIVNAPL 66 (264)
T ss_pred CcccHHHHHHHHHHHHHHCCCeEEEEeCCCC-chHHHHHHHHHHH-hcCCCEEEEeCCC
Confidence 3455667788899999999999887755432 2233344444443 2369999997553
No 382
>cd01538 PBP1_ABC_xylose_binding Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic xylose-binding protein is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=47.93 E-value=1.1e+02 Score=26.13 Aligned_cols=60 Identities=12% Similarity=0.037 Sum_probs=40.9
Q ss_pred EEEEeC-CCcchHHHHHHHHHHHHHcCcceEEEeCCCCCCHHHHHHHHHHhcCCCCccEEEEeC
Q psy7981 45 AIVQVG-GREDSNVYIRMKMKAAKEIGIDAQHVKLPRSITEIELLSRLKKLNEDPSVHGIIVQM 107 (216)
Q Consensus 45 aiI~vg-~~~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvql 107 (216)
++|.-. +++-....++...+.|++.|+.+....... ++++..+.++.+-+ ..++||++.-
T Consensus 3 ~vi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~--~~~~~~~~i~~~~~-~~vdgiii~~ 63 (288)
T cd01538 3 GLSLPTKTEERWIRDRPNFEAALKELGAEVIVQNANG--DPAKQISQIENMIA-KGVDVLVIAP 63 (288)
T ss_pred EEEEeCCCcHHHHHHHHHHHHHHHHcCCEEEEECCCC--CHHHHHHHHHHHHH-cCCCEEEEec
Confidence 444432 344555666788899999999988876433 45556677777654 4799999973
No 383
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=47.87 E-value=22 Score=28.70 Aligned_cols=36 Identities=33% Similarity=0.339 Sum_probs=28.6
Q ss_pred CCCCeEEEecCCCcccHHHHHHhhhCCCEEEEecCCC
Q psy7981 168 IAGTNAVVLGRSKIVGTPAAELLKWKHATVTVCHSKT 204 (216)
Q Consensus 168 l~Gk~vvViGrS~~VG~Pla~lL~~~~ATVtichs~T 204 (216)
+..++|+|+| ...||+-.+.+|...||.|++.+..-
T Consensus 18 ~~p~~vvv~G-~G~vg~gA~~~~~~lGa~v~~~d~~~ 53 (168)
T PF01262_consen 18 VPPAKVVVTG-AGRVGQGAAEIAKGLGAEVVVPDERP 53 (168)
T ss_dssp E-T-EEEEES-TSHHHHHHHHHHHHTT-EEEEEESSH
T ss_pred CCCeEEEEEC-CCHHHHHHHHHHhHCCCEEEeccCCH
Confidence 4568999999 55679999999999999999998753
No 384
>KOG3474|consensus
Probab=47.80 E-value=18 Score=26.37 Aligned_cols=29 Identities=17% Similarity=0.284 Sum_probs=26.0
Q ss_pred HHHHHHcCcceEEEeCCCCCCHHHHHHHH
Q psy7981 63 MKAAKEIGIDAQHVKLPRSITEIELLSRL 91 (216)
Q Consensus 63 ~k~a~~~Gi~~~~~~l~~~~~~~el~~~I 91 (216)
.++|+-.|..-+.++||+.++.++.++.|
T Consensus 10 a~A~eLtG~~d~ai~~Pe~s~~ee~~dei 38 (84)
T KOG3474|consen 10 AEACELTGKPDEAIDFPEESDTEECLDEI 38 (84)
T ss_pred hhhHHhcCCchhhccCCCCCCHHHHHHHH
Confidence 37899999999999999999999888865
No 385
>cd06314 PBP1_tmGBP Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs. Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs from other bacteria. They are a member of the type I periplasmic binding protein superfamily which consists of two domains connected by a three-stranded hinge. TmGBP is specific for glucose and its binding pocket is buried at the interface of the two domains. TmGBP also exhibits high thermostability and the highest structural similarity to E. coli glucose binding protein (ecGBP).
Probab=47.76 E-value=94 Score=25.98 Aligned_cols=53 Identities=26% Similarity=0.251 Sum_probs=33.3
Q ss_pred CcchHHHHHHHHHHHHHcCcceEEEeCCCCCCHHHHHHHHHHhcCCCCccEEEEe
Q psy7981 52 REDSNVYIRMKMKAAKEIGIDAQHVKLPRSITEIELLSRLKKLNEDPSVHGIIVQ 106 (216)
Q Consensus 52 ~~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq 106 (216)
++-....++.....|++.|+.+.... +...+.+...+.++.+- +.+|+|+++.
T Consensus 10 ~~~~~~~~~gi~~~~~~~g~~~~~~~-~~~~~~~~~~~~i~~l~-~~~vDgiIi~ 62 (271)
T cd06314 10 SPFWKIAEAGVKAAGKELGVDVEFVV-PQQGTVNAQLRMLEDLI-AEGVDGIAIS 62 (271)
T ss_pred cHHHHHHHHHHHHHHHHcCCeEEEeC-CCCCCHHHHHHHHHHHH-hcCCCEEEEe
Confidence 44445556777888999998877652 22223344445555553 3479999996
No 386
>TIGR02823 oxido_YhdH putative quinone oxidoreductase, YhdH/YhfP family. This model represents a subfamily of pfam00107 as defined by Pfam, a superfamily in which some members are zinc-binding medium-chain alcohol dehydrogenases while others are quinone oxidoreductases with no bound zinc. This subfamily includes proteins studied crystallographically for insight into function: YhdH from Escherichia coli and YhfP from Bacillus subtilis. Members bind NADPH or NAD, but not zinc.
Probab=47.71 E-value=35 Score=29.47 Aligned_cols=48 Identities=19% Similarity=0.166 Sum_probs=35.4
Q ss_pred CHHHHHHHHHHhCCCCCCC-eEEEecCCCcccHHHHHHhhhCCCEEEEec
Q psy7981 153 TPNGVLELIKRTNVTIAGT-NAVVLGRSKIVGTPAAELLKWKHATVTVCH 201 (216)
Q Consensus 153 Ta~av~~lL~~~~i~l~Gk-~vvViGrS~~VG~Pla~lL~~~~ATVtich 201 (216)
|+.-.+.-++.+++ ..|. +|+|.|.+..+|.-+..++..+|++|++.-
T Consensus 129 ta~~~~~~~~~~~~-~~~~~~vlI~g~~g~vg~~~~~la~~~G~~vi~~~ 177 (323)
T TIGR02823 129 TAALSVMALERNGL-TPEDGPVLVTGATGGVGSLAVAILSKLGYEVVAST 177 (323)
T ss_pred HHHHHHHHhhhcCC-CCCCceEEEEcCCcHHHHHHHHHHHHcCCeEEEEe
Confidence 33333344454443 3576 999999999999999999999999987653
No 387
>cd06275 PBP1_PurR Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. This dimeric PurR belongs to the LacI-GalR family of transcription regulators and is activated to bind to DNA operator sites by initially binding either of high affinity corepressors, hypoxanthine or guanine. PurR is composed of two functional domains: aan N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the purine transcription repressor undergoes a
Probab=47.69 E-value=75 Score=26.32 Aligned_cols=52 Identities=15% Similarity=0.050 Sum_probs=35.3
Q ss_pred cchHHHHHHHHHHHHHcCcceEEEeCCCCCCHHHHHHHHHHhcCCCCccEEEEeC
Q psy7981 53 EDSNVYIRMKMKAAKEIGIDAQHVKLPRSITEIELLSRLKKLNEDPSVHGIIVQM 107 (216)
Q Consensus 53 ~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvql 107 (216)
+-.....+...++|++.|.+..... .+-+.++..+.++.+... +++||++.-
T Consensus 12 ~~~~~~~~gi~~~~~~~g~~~~~~~--~~~~~~~~~~~i~~l~~~-~vdgiii~~ 63 (269)
T cd06275 12 PFFAEVVRGVEQYCYRQGYNLILCN--TEGDPERQRSYLRMLAQK-RVDGLLVMC 63 (269)
T ss_pred chHHHHHHHHHHHHHHcCCEEEEEe--CCCChHHHHHHHHHHHHc-CCCEEEEec
Confidence 3344445777888999998876643 333456666777777653 789999953
No 388
>KOG1494|consensus
Probab=47.63 E-value=19 Score=32.93 Aligned_cols=28 Identities=32% Similarity=0.438 Sum_probs=24.1
Q ss_pred CCCCCCCeEEEecCCCcccHHHHHHhhh
Q psy7981 165 NVTIAGTNAVVLGRSKIVGTPAAELLKW 192 (216)
Q Consensus 165 ~i~l~Gk~vvViGrS~~VG~Pla~lL~~ 192 (216)
...-.+.+|+|+|.+.=+|.||++||..
T Consensus 23 ~~~~~~~KVAvlGAaGGIGQPLSLLlK~ 50 (345)
T KOG1494|consen 23 SGSQRGLKVAVLGAAGGIGQPLSLLLKL 50 (345)
T ss_pred ccccCcceEEEEecCCccCccHHHHHhc
Confidence 3455788999999999999999999864
No 389
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=47.61 E-value=17 Score=33.79 Aligned_cols=47 Identities=19% Similarity=0.382 Sum_probs=37.8
Q ss_pred CCCCCCeEEEecCCCcccHHHHHHhhhCCC-EEEEecCCCCChHHHHhc
Q psy7981 166 VTIAGTNAVVLGRSKIVGTPAAELLKWKHA-TVTVCHSKTKNIQDVVKS 213 (216)
Q Consensus 166 i~l~Gk~vvViGrS~~VG~Pla~lL~~~~A-TVtichs~T~~l~~~~k~ 213 (216)
-.|++++|+|||-+.+ |.+++..|...|. ++++++-.+-++..+-||
T Consensus 37 ~~l~~~~VliiG~Ggl-G~~v~~~La~~Gvg~i~ivD~D~ve~sNL~RQ 84 (370)
T PRK05600 37 ERLHNARVLVIGAGGL-GCPAMQSLASAGVGTITLIDDDTVDVSNIHRQ 84 (370)
T ss_pred HHhcCCcEEEECCCHH-HHHHHHHHHHcCCCEEEEEeCCEEcccccccc
Confidence 3578999999999976 9999999999885 899998876555554444
No 390
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=47.57 E-value=22 Score=27.07 Aligned_cols=34 Identities=18% Similarity=0.249 Sum_probs=24.8
Q ss_pred eEEEecCCCcccHHHHHHhhhC-CCEEEEecCCCC
Q psy7981 172 NAVVLGRSKIVGTPAAELLKWK-HATVTVCHSKTK 205 (216)
Q Consensus 172 ~vvViGrS~~VG~Pla~lL~~~-~ATVtichs~T~ 205 (216)
||.|||.+..+|+-+..+|.++ ++.++.+.+.+.
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~ 35 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSR 35 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTT
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeecc
Confidence 5889999999999999998875 555554444443
No 391
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=47.55 E-value=24 Score=33.25 Aligned_cols=35 Identities=23% Similarity=0.305 Sum_probs=30.5
Q ss_pred CCCeEEEecCCCcccHHHHHHhhhCCCEEEEecCCC
Q psy7981 169 AGTNAVVLGRSKIVGTPAAELLKWKHATVTVCHSKT 204 (216)
Q Consensus 169 ~Gk~vvViGrS~~VG~Pla~lL~~~~ATVtichs~T 204 (216)
.+++++|||-+ .+|--+|..|.+.|..||+++...
T Consensus 173 ~~~~vvIIGgG-~ig~E~A~~l~~~G~~Vtlie~~~ 207 (466)
T PRK06115 173 VPKHLVVIGAG-VIGLELGSVWRRLGAQVTVVEYLD 207 (466)
T ss_pred CCCeEEEECCC-HHHHHHHHHHHHcCCeEEEEeCCC
Confidence 58999999976 569999999999999999998644
No 392
>COG0521 MoaB Molybdopterin biosynthesis enzymes [Coenzyme metabolism]
Probab=47.48 E-value=1.3e+02 Score=25.08 Aligned_cols=89 Identities=15% Similarity=0.246 Sum_probs=61.2
Q ss_pred ceEEEEEeCCCcchHHHH----HHHHHHHHHcCcceEEEeCCCCCCHHHHHHHHHHhcCCCCccEEEEeCCCC-CCCCCC
Q psy7981 42 PGLAIVQVGGREDSNVYI----RMKMKAAKEIGIDAQHVKLPRSITEIELLSRLKKLNEDPSVHGIIVQMPLD-SDNDIN 116 (216)
Q Consensus 42 P~LaiI~vg~~~as~~Yv----~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvqlPL~-~P~~id 116 (216)
-+.+||.|.+.-.+..|. +-.....++.|.+...+.+=.| ..+.+.+.+.++.++. +|.|+.-==-. .|....
T Consensus 8 ~~~~VvTVSd~r~~~~~~D~sG~~l~~~L~~ag~~~~~~~iV~D-~~~~I~~~l~~~~~~~-~DvvlttGGTG~t~RDvT 85 (169)
T COG0521 8 LRIAVVTVSDRRSTGEYEDKSGPLLVELLEEAGHNVAAYTIVPD-DKEQIRATLIALIDED-VDVVLTTGGTGITPRDVT 85 (169)
T ss_pred eeEEEEEEecccccCCccccchhHHHHHHHHcCCccceEEEeCC-CHHHHHHHHHHHhcCC-CCEEEEcCCccCCCCcCC
Confidence 358999999876444442 3456777889998855544333 3578999999998888 99988742110 055666
Q ss_pred HHHHhhhcCCCCCcccCC
Q psy7981 117 AMLVTDSVSPEKDVDGLN 134 (216)
Q Consensus 117 ~~~i~~~I~p~KDVDG~~ 134 (216)
.+.+...+ +|+++||.
T Consensus 86 pEA~~~~~--dKeipGFg 101 (169)
T COG0521 86 PEATRPLF--DKEIPGFG 101 (169)
T ss_pred HHHHHHHH--hccCCcHH
Confidence 66666655 89999985
No 393
>PRK11267 biopolymer transport protein ExbD; Provisional
Probab=47.35 E-value=48 Score=26.28 Aligned_cols=55 Identities=13% Similarity=0.088 Sum_probs=40.9
Q ss_pred cccHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcchHHHHHHHHHHHHHcCcceE
Q psy7981 13 LSGTAVSGDIREGLKERVKKLKERLPDFEPGLAIVQVGGREDSNVYIRMKMKAAKEIGIDAQ 74 (216)
Q Consensus 13 l~Gk~vA~~i~~~ik~~v~~l~~~~~~~~P~LaiI~vg~~~as~~Yv~~k~k~a~~~Gi~~~ 74 (216)
++|+++.. ++++++++.+.+ ..|...++..+|...+.-.+-.-...|++.|+.-.
T Consensus 76 ~~~~~v~~---~~L~~~L~~~~~----~~~~~~V~I~aD~~~~~~~vv~vmd~l~~aG~~~v 130 (141)
T PRK11267 76 IGNDPVTD---ETMITALDALTE----GKKDTTIFFRADKTVDYETLMKVMDTLHQAGYLKI 130 (141)
T ss_pred ECCccccH---HHHHHHHHHHHh----cCCCceEEEEcCCCCCHHHHHHHHHHHHHcCCCeE
Confidence 57777653 456666665543 23667788889899999999999999999999743
No 394
>COG0272 Lig NAD-dependent DNA ligase (contains BRCT domain type II) [DNA replication, recombination, and repair]
Probab=47.29 E-value=36 Score=34.31 Aligned_cols=67 Identities=27% Similarity=0.389 Sum_probs=46.0
Q ss_pred hhhcccHHHHHHHHHHHHHHHHHHHhcC-CCCCceEEEEEeCCCcchHHHHHHHHHHHHHcCcceEEEeCCCCCCHHHHH
Q psy7981 10 AQILSGTAVSGDIREGLKERVKKLKERL-PDFEPGLAIVQVGGREDSNVYIRMKMKAAKEIGIDAQHVKLPRSITEIELL 88 (216)
Q Consensus 10 a~il~Gk~vA~~i~~~ik~~v~~l~~~~-~~~~P~LaiI~vg~~~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~ 88 (216)
+.++.|. +..-=|.++|+.++.+-.+- +.+..+.-.|.+|++++| |.+.|+++||+.. ++++++
T Consensus 599 t~V~TGt-L~~~sR~eak~~le~lGakv~~SVSkktD~vvaG~~aGS------Kl~kA~eLgv~i~--------~E~~~~ 663 (667)
T COG0272 599 TFVLTGT-LEGMSRDEAKALLEALGAKVSGSVSKKTDYVVAGENAGS------KLAKAQELGVKII--------DEEEFL 663 (667)
T ss_pred EEEEecc-CCCCCHHHHHHHHHHcCCEEeceecccccEEEEcCCCCh------HHHHHHHcCCeEe--------cHHHHH
Confidence 3445554 33334567777777663221 235788999999999998 8899999999764 467777
Q ss_pred HHH
Q psy7981 89 SRL 91 (216)
Q Consensus 89 ~~I 91 (216)
+.+
T Consensus 664 ~ll 666 (667)
T COG0272 664 ALL 666 (667)
T ss_pred Hhh
Confidence 665
No 395
>cd06321 PBP1_ABC_sugar_binding_like_11 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=47.23 E-value=96 Score=25.81 Aligned_cols=56 Identities=11% Similarity=0.057 Sum_probs=36.9
Q ss_pred CcchHHHHHHHHHHHHHcCcceEEEeCCCCCCHHHHHHHHHHhcCCCCccEEEEeCCC
Q psy7981 52 REDSNVYIRMKMKAAKEIGIDAQHVKLPRSITEIELLSRLKKLNEDPSVHGIIVQMPL 109 (216)
Q Consensus 52 ~~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvqlPL 109 (216)
++--....+...++|+++|..+....++.+.+.+...+.++.+-. ..++||++. |.
T Consensus 11 ~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~dgiIi~-~~ 66 (271)
T cd06321 11 NPFFVALAKGAEAAAKKLNPGVKVTVVSADYDLNKQVSQIDNFIA-AKVDLILLN-AV 66 (271)
T ss_pred CHHHHHHHHHHHHHHHHhCCCeEEEEccCCCCHHHHHHHHHHHHH-hCCCEEEEe-CC
Confidence 344444567788999997766766666555566666666666543 458999884 54
No 396
>PRK12831 putative oxidoreductase; Provisional
Probab=47.22 E-value=24 Score=33.41 Aligned_cols=35 Identities=23% Similarity=0.221 Sum_probs=30.5
Q ss_pred CCCCeEEEecCCCcccHHHHHHhhhCCCEEEEecCC
Q psy7981 168 IAGTNAVVLGRSKIVGTPAAELLKWKHATVTVCHSK 203 (216)
Q Consensus 168 l~Gk~vvViGrS~~VG~Pla~lL~~~~ATVtichs~ 203 (216)
-.|++|+|||.+.- |.-.|..|.++|+.||+..+.
T Consensus 138 ~~~~~V~IIG~GpA-Gl~aA~~l~~~G~~V~v~e~~ 172 (464)
T PRK12831 138 KKGKKVAVIGSGPA-GLTCAGDLAKMGYDVTIFEAL 172 (464)
T ss_pred CCCCEEEEECcCHH-HHHHHHHHHhCCCeEEEEecC
Confidence 46999999998854 899999999999999999753
No 397
>PRK06370 mercuric reductase; Validated
Probab=47.07 E-value=30 Score=32.41 Aligned_cols=35 Identities=20% Similarity=0.284 Sum_probs=31.1
Q ss_pred CCCeEEEecCCCcccHHHHHHhhhCCCEEEEecCCC
Q psy7981 169 AGTNAVVLGRSKIVGTPAAELLKWKHATVTVCHSKT 204 (216)
Q Consensus 169 ~Gk~vvViGrS~~VG~Pla~lL~~~~ATVtichs~T 204 (216)
.+++|+|||-+. +|--+|..|.+.|..||+++...
T Consensus 170 ~~~~vvVIGgG~-~g~E~A~~l~~~G~~Vtli~~~~ 204 (463)
T PRK06370 170 LPEHLVIIGGGY-IGLEFAQMFRRFGSEVTVIERGP 204 (463)
T ss_pred cCCEEEEECCCH-HHHHHHHHHHHcCCeEEEEEcCC
Confidence 479999999885 69999999999999999998755
No 398
>PLN02712 arogenate dehydrogenase
Probab=46.86 E-value=25 Score=35.22 Aligned_cols=38 Identities=13% Similarity=0.008 Sum_probs=32.6
Q ss_pred CCCCCCCeEEEecCCCcccHHHHHHhhhCCCEEEEecCC
Q psy7981 165 NVTIAGTNAVVLGRSKIVGTPAAELLKWKHATVTVCHSK 203 (216)
Q Consensus 165 ~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~ATVtichs~ 203 (216)
+.++.+++|.|||-+ .+|..++..|.+.|.+|+++...
T Consensus 364 ~~~~~~~kIgIIGlG-~mG~slA~~L~~~G~~V~~~dr~ 401 (667)
T PLN02712 364 VNDGSKLKIAIVGFG-NFGQFLAKTMVKQGHTVLAYSRS 401 (667)
T ss_pred cCCCCCCEEEEEecC-HHHHHHHHHHHHCcCEEEEEECC
Confidence 457899999999955 67999999999999999988754
No 399
>TIGR02667 moaB_proteo molybdenum cofactor biosynthesis protein B, proteobacterial. This model represents the MoaB protein molybdopterin biosynthesis regions in Proteobacteria. This crystallized but incompletely characterized protein is thought to be involved in, though not required for, early steps in molybdopterin biosynthesis. It may bind a molybdopterin precursor. A distinctive conserved motif PCN near the C-terminus helps distinguish this clade from other homologs, including sets of proteins designated MogA.
Probab=46.80 E-value=1.6e+02 Score=23.95 Aligned_cols=89 Identities=16% Similarity=0.245 Sum_probs=53.7
Q ss_pred CCceEEEEEeCCCc----chHHHHHHHHHHHHHcCcceEEEeCCCCCCHHHHHHHHHHhcCCCCccEEEEeCCCC-CCCC
Q psy7981 40 FEPGLAIVQVGGRE----DSNVYIRMKMKAAKEIGIDAQHVKLPRSITEIELLSRLKKLNEDPSVHGIIVQMPLD-SDND 114 (216)
Q Consensus 40 ~~P~LaiI~vg~~~----as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvqlPL~-~P~~ 114 (216)
.+|+.++|.+|+.- ++..| ......++.|+++..+..=.| +.+++.+.|+++-+....|-|+.-==.. +|..
T Consensus 3 ~~~rv~vit~~d~~~~~~d~n~~--~l~~~L~~~G~~v~~~~iv~D-d~~~i~~~l~~~~~~~~~DlVIttGGtg~g~~D 79 (163)
T TIGR02667 3 IPLRIAILTVSDTRTEEDDTSGQ--YLVERLTEAGHRLADRAIVKD-DIYQIRAQVSAWIADPDVQVILITGGTGFTGRD 79 (163)
T ss_pred CccEEEEEEEeCcCCccCCCcHH--HHHHHHHHCCCeEEEEEEcCC-CHHHHHHHHHHHHhcCCCCEEEECCCcCCCCCC
Confidence 46899999999842 33333 345568889999877654332 4578888888874434567666542110 0333
Q ss_pred CCHHHHhhhcCCCCCcccC
Q psy7981 115 INAMLVTDSVSPEKDVDGL 133 (216)
Q Consensus 115 id~~~i~~~I~p~KDVDG~ 133 (216)
+-.+.+.+.+ +|.++|+
T Consensus 80 ~t~eal~~l~--~~~l~G~ 96 (163)
T TIGR02667 80 VTPEALEPLF--DKTVEGF 96 (163)
T ss_pred CcHHHHHHHH--CCcCCcH
Confidence 3345554444 5777775
No 400
>cd06578 HemD Uroporphyrinogen-III synthase (HemD) catalyzes the asymmetrical cyclization of tetrapyrrole (linear) to uroporphyrinogen-III, the fourth step in the biosynthesis of heme. This ubiquitous enzyme is present in eukaryotes, bacteria and archaea. Mutations in the human uroporphyrinogen-III synthase gene cause congenital erythropoietic porphyria, a recessive inborn error of metabolism also known as Gunther disease.
Probab=46.70 E-value=43 Score=27.46 Aligned_cols=131 Identities=19% Similarity=0.240 Sum_probs=79.0
Q ss_pred HHHHHHHcCcceEEEeCCCCC--CHHHHHHHHHHhcCCCCccEEEEeCCCCCCCCCCHHHHhhhcCCC--CCcccCCccc
Q psy7981 62 KMKAAKEIGIDAQHVKLPRSI--TEIELLSRLKKLNEDPSVHGIIVQMPLDSDNDINAMLVTDSVSPE--KDVDGLNTIN 137 (216)
Q Consensus 62 k~k~a~~~Gi~~~~~~l~~~~--~~~el~~~I~~lN~D~~V~GIlvqlPL~~P~~id~~~i~~~I~p~--KDVDG~~~~n 137 (216)
..+.+++.|.++..+.+-+.. +..++...+..++ +.++|++..|= .. +.+.+.+... ......+-+-
T Consensus 13 l~~~L~~~G~~~~~~p~~~~~~~~~~~~~~~~~~~~---~~~~iiftS~~----av--~~~~~~~~~~~~~~~~~~~~~a 83 (239)
T cd06578 13 LAALLEALGAEVLELPLIEIEPLDDAELDAALADLD---EYDWLIFTSPN----AV--EAFFEALEELGLRALAGLKIAA 83 (239)
T ss_pred HHHHHHHcCCcEEEeeeEEEecCChHHHHHHHHhcC---CCCEEEEECHH----HH--HHHHHHHHhhCCccccCCEEEE
Confidence 356777788887766554432 2345666666665 68888887663 23 2333333211 1222233333
Q ss_pred hhHhh------cCCCCCccc--CCHHHHHHHHHHhCCCCCCCeEEEecCCCcccHHHHHHhhhCCCEEEEecCCC
Q psy7981 138 EGRVA------IGDMNGFIP--CTPNGVLELIKRTNVTIAGTNAVVLGRSKIVGTPAAELLKWKHATVTVCHSKT 204 (216)
Q Consensus 138 ~G~l~------~~~~~~~~P--cTa~av~~lL~~~~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~ATVtichs~T 204 (216)
.|.-- .|-...+.| -|..+.++++..+ ++.|++ ++++|+......+...|.++|+.|+.+.-++
T Consensus 84 vG~~Ta~~l~~~g~~~~~~~~~~~~~~L~~~i~~~--~~~~~~-il~~~g~~~~~~l~~~L~~~g~~v~~~~~Y~ 155 (239)
T cd06578 84 VGPKTAEALREAGLTADFVPEEGDSEGLLELLELQ--DGKGKR-ILRPRGGRAREDLAEALRERGAEVDEVEVYR 155 (239)
T ss_pred ECHHHHHHHHHcCCCceeCCCccCHHHHHHHHHhc--CCCCCE-EEEEcCcchhHHHHHHHHHCCCEEEEEEEEE
Confidence 33211 121113333 4788899999876 567777 5567777777899999999999999887654
No 401
>cd08273 MDR8 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=46.59 E-value=50 Score=28.48 Aligned_cols=52 Identities=19% Similarity=0.193 Sum_probs=38.3
Q ss_pred ccCCHHHHHHHHHHhCCCCCCCeEEEecCCCcccHHHHHHhhhCCCEEEEec
Q psy7981 150 IPCTPNGVLELIKRTNVTIAGTNAVVLGRSKIVGTPAAELLKWKHATVTVCH 201 (216)
Q Consensus 150 ~PcTa~av~~lL~~~~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~ATVtich 201 (216)
+||.....+..+...+--..|..++|.|-+..+|.-+..+....|++|...-
T Consensus 120 ~~~~~~ta~~~l~~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~g~~v~~~~ 171 (331)
T cd08273 120 LVLNYVTAYQMLHRAAKVLTGQRVLIHGASGGVGQALLELALLAGAEVYGTA 171 (331)
T ss_pred hhhHHHHHHHHHHHhcCCCCCCEEEEECCCcHHHHHHHHHHHHcCCEEEEEe
Confidence 3444444444444444445799999999999999999999999999987654
No 402
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=46.46 E-value=26 Score=32.84 Aligned_cols=35 Identities=11% Similarity=0.129 Sum_probs=31.0
Q ss_pred CCCeEEEecCCCcccHHHHHHhhhCCCEEEEecCCC
Q psy7981 169 AGTNAVVLGRSKIVGTPAAELLKWKHATVTVCHSKT 204 (216)
Q Consensus 169 ~Gk~vvViGrS~~VG~Pla~lL~~~~ATVtichs~T 204 (216)
.+++++|||-+. +|-=+|..|.+.|..||+++...
T Consensus 165 ~~~~vvIIGgG~-iG~E~A~~l~~~g~~Vtli~~~~ 199 (450)
T TIGR01421 165 LPKRVVIVGAGY-IAVELAGVLHGLGSETHLVIRHE 199 (450)
T ss_pred cCCeEEEECCCH-HHHHHHHHHHHcCCcEEEEecCC
Confidence 479999999885 59999999999999999998764
No 403
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=46.39 E-value=22 Score=37.53 Aligned_cols=35 Identities=26% Similarity=0.259 Sum_probs=31.7
Q ss_pred CCCCeEEEecCCCcccHHHHHHhhhCCCEEEEecCC
Q psy7981 168 IAGTNAVVLGRSKIVGTPAAELLKWKHATVTVCHSK 203 (216)
Q Consensus 168 l~Gk~vvViGrS~~VG~Pla~lL~~~~ATVtichs~ 203 (216)
-.||+|+|||.+.- |...|..|.++|..||+....
T Consensus 537 ~tgKkVaIIGgGPA-GLsAA~~Lar~G~~VtV~Ek~ 571 (1019)
T PRK09853 537 GSRKKVAVIGAGPA-GLAAAYFLARAGHPVTVFERE 571 (1019)
T ss_pred CCCCcEEEECCCHH-HHHHHHHHHHcCCeEEEEecc
Confidence 47999999999986 999999999999999999754
No 404
>PRK13984 putative oxidoreductase; Provisional
Probab=45.98 E-value=24 Score=34.40 Aligned_cols=35 Identities=29% Similarity=0.223 Sum_probs=30.4
Q ss_pred CCCCeEEEecCCCcccHHHHHHhhhCCCEEEEecCC
Q psy7981 168 IAGTNAVVLGRSKIVGTPAAELLKWKHATVTVCHSK 203 (216)
Q Consensus 168 l~Gk~vvViGrS~~VG~Pla~lL~~~~ATVtichs~ 203 (216)
-.|++|+||| +...|.-.|..|.++|..||+..+.
T Consensus 281 ~~~~~v~IIG-aG~aGl~aA~~L~~~G~~v~vie~~ 315 (604)
T PRK13984 281 KKNKKVAIVG-SGPAGLSAAYFLATMGYEVTVYESL 315 (604)
T ss_pred cCCCeEEEEC-CCHHHHHHHHHHHHCCCeEEEEecC
Confidence 4799999999 5578999999999999999998543
No 405
>PRK06063 DNA polymerase III subunit epsilon; Provisional
Probab=45.97 E-value=51 Score=29.81 Aligned_cols=71 Identities=20% Similarity=0.239 Sum_probs=45.5
Q ss_pred hhhcccHHHHHHHHHHHHHHHHHHHhcC-CCCCceEEEEEeCCCcchHHHHHHHHHHHHHcCcceEEEeCCCCCCHHHHH
Q psy7981 10 AQILSGTAVSGDIREGLKERVKKLKERL-PDFEPGLAIVQVGGREDSNVYIRMKMKAAKEIGIDAQHVKLPRSITEIELL 88 (216)
Q Consensus 10 a~il~Gk~vA~~i~~~ik~~v~~l~~~~-~~~~P~LaiI~vg~~~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~ 88 (216)
..++.|.- . .=|+++++.++..--.- .++.-+.-.+.+|++++. .+|.+.|+++||. -+++++|+
T Consensus 237 ~~v~TG~l-~-~~R~e~~~~~~~~G~~v~~sVs~~t~~lv~g~~~~~----ssK~~kA~~~gi~--------ii~e~~f~ 302 (313)
T PRK06063 237 RVALSAEV-S-RTHEELVERILHAGLAYSDSVDRDTSLVVCNDPAPE----QGKGYHARQLGVP--------VLDEAAFL 302 (313)
T ss_pred EEEEecCC-C-CCHHHHHHHHHHcCCEecCccccCccEEEECCCCCc----ccHHHHHHHcCCc--------cccHHHHH
Confidence 34566653 2 23456655555431100 134567888999987763 3489999999986 35789999
Q ss_pred HHHHHh
Q psy7981 89 SRLKKL 94 (216)
Q Consensus 89 ~~I~~l 94 (216)
+.+...
T Consensus 303 ~ll~~~ 308 (313)
T PRK06063 303 ELLRAV 308 (313)
T ss_pred HHHHhh
Confidence 988654
No 406
>cd06324 PBP1_ABC_sugar_binding_like_13 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=45.97 E-value=99 Score=26.72 Aligned_cols=55 Identities=16% Similarity=0.204 Sum_probs=35.9
Q ss_pred CcchHHHHHHHHHHHHHcCcceEEEeCCCCCCHHHHHHHHHHhcCC-CCccEEEEeCCC
Q psy7981 52 REDSNVYIRMKMKAAKEIGIDAQHVKLPRSITEIELLSRLKKLNED-PSVHGIIVQMPL 109 (216)
Q Consensus 52 ~~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D-~~V~GIlvqlPL 109 (216)
++-.....+..+++|++.|..+....-.. +.+.-.+.++.+-.. .+|+||++. |.
T Consensus 12 ~~~~~~~~~gi~~~~~~~g~~v~~~~~~~--~~~~~~~~i~~~~~~~~~vdgiIi~-~~ 67 (305)
T cd06324 12 EPFWNSVARFMQAAADDLGIELEVLYAER--DRFLMLQQARTILQRPDKPDALIFT-NE 67 (305)
T ss_pred CcHHHHHHHHHHHHHHhcCCeEEEEeCCC--CHHHHHHHHHHHHHhccCCCEEEEc-CC
Confidence 33444556778889999999988765433 344445566665443 279999995 54
No 407
>cd01540 PBP1_arabinose_binding Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. ABP is only involved in transport contrary to other related sugar-binding proteins such as the glucose/galactose-binding protein (GGBP) and the ribose-binding protein (RBP), both of which are involved in chemotaxis as well as transport. The periplasmic ABP consists of two alpha/beta globular domains connected by a three-stranded hinge, a Venus flytrap-like domain, which undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, ABP is homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR) and DNA-binding transcriptional repressors such a
Probab=45.89 E-value=88 Score=26.32 Aligned_cols=51 Identities=22% Similarity=0.330 Sum_probs=34.5
Q ss_pred cchHHHHHHHHHHHHHcCcceEEEeCCCCCCHHHHHHHHHHhcCCCCccEEEEeC
Q psy7981 53 EDSNVYIRMKMKAAKEIGIDAQHVKLPRSITEIELLSRLKKLNEDPSVHGIIVQM 107 (216)
Q Consensus 53 ~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvql 107 (216)
+--....+...++|++.|..+..+... ..++..+.++.+-. .+++||++.-
T Consensus 12 ~~~~~~~~gi~~~~~~~g~~~~~~~~~---~~~~~~~~i~~~~~-~~~dgiii~~ 62 (289)
T cd01540 12 PWFQTEWKFAKKAAKEKGFTVVKIDVP---DGEKVLSAIDNLGA-QGAKGFVICV 62 (289)
T ss_pred cHHHHHHHHHHHHHHHcCCEEEEccCC---CHHHHHHHHHHHHH-cCCCEEEEcc
Confidence 333444567789999999888765433 34555667776644 6799999963
No 408
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=45.77 E-value=26 Score=32.66 Aligned_cols=35 Identities=14% Similarity=0.251 Sum_probs=31.0
Q ss_pred CCCeEEEecCCCcccHHHHHHhhhCCCEEEEecCCC
Q psy7981 169 AGTNAVVLGRSKIVGTPAAELLKWKHATVTVCHSKT 204 (216)
Q Consensus 169 ~Gk~vvViGrS~~VG~Pla~lL~~~~ATVtichs~T 204 (216)
.+++++|||-+. +|-=+|..|.+.|..||+++...
T Consensus 174 ~~~~v~IiGgG~-~g~E~A~~l~~~g~~Vtli~~~~ 208 (461)
T PRK05249 174 LPRSLIIYGAGV-IGCEYASIFAALGVKVTLINTRD 208 (461)
T ss_pred cCCeEEEECCCH-HHHHHHHHHHHcCCeEEEEecCC
Confidence 479999999774 59999999999999999998765
No 409
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=45.67 E-value=50 Score=29.08 Aligned_cols=42 Identities=19% Similarity=0.172 Sum_probs=24.5
Q ss_pred CcchHHHHHHHHHHHHHcCcceEEEeCCCC-------CCHHHHHHHHHH
Q psy7981 52 REDSNVYIRMKMKAAKEIGIDAQHVKLPRS-------ITEIELLSRLKK 93 (216)
Q Consensus 52 ~~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~-------~~~~el~~~I~~ 93 (216)
|.+.......|..+|.++||.+..++=|.. .+.+|+++.+++
T Consensus 205 ~SG~~Gg~~eKi~AA~~lgi~vivI~RP~~~~~~~~~~~~~el~~~l~~ 253 (256)
T TIGR00715 205 ASGEQGGELEKVKAAEALGINVIRIARPQTIPGVAIFDDISQLNQFVAR 253 (256)
T ss_pred CCCCccchHHHHHHHHHcCCcEEEEeCCCCCCCCccCCCHHHHHHHHHH
Confidence 333333445677777777777777776652 244555555544
No 410
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=45.55 E-value=31 Score=32.50 Aligned_cols=36 Identities=17% Similarity=0.205 Sum_probs=31.0
Q ss_pred CCCCeEEEecCCCcccHHHHHHhhhCCCEEEEecCCC
Q psy7981 168 IAGTNAVVLGRSKIVGTPAAELLKWKHATVTVCHSKT 204 (216)
Q Consensus 168 l~Gk~vvViGrS~~VG~Pla~lL~~~~ATVtichs~T 204 (216)
-.+++|+|||.+. +|.-+|..|.+.+..||+++...
T Consensus 181 ~~~~~vvVvGgG~-~g~E~A~~l~~~g~~Vtli~~~~ 216 (475)
T PRK06327 181 EVPKKLAVIGAGV-IGLELGSVWRRLGAEVTILEALP 216 (475)
T ss_pred ccCCeEEEECCCH-HHHHHHHHHHHcCCeEEEEeCCC
Confidence 3579999999885 49999999999999999998643
No 411
>cd08248 RTN4I1 Human Reticulon 4 Interacting Protein 1. Human Reticulon 4 Interacting Protein 1 is a member of the medium chain dehydrogenase/ reductase (MDR) family. Riticulons are endoplasmic reticulum associated proteins involved in membrane trafficking and neuroendocrine secretion. The MDR/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=45.52 E-value=53 Score=28.69 Aligned_cols=34 Identities=47% Similarity=0.430 Sum_probs=30.4
Q ss_pred CCCeEEEecCCCcccHHHHHHhhhCCCEEEEecC
Q psy7981 169 AGTNAVVLGRSKIVGTPAAELLKWKHATVTVCHS 202 (216)
Q Consensus 169 ~Gk~vvViGrS~~VG~Pla~lL~~~~ATVtichs 202 (216)
.|.+|+|.|.+..+|.-++.+....|++|+...+
T Consensus 162 ~g~~vlI~g~~g~ig~~~~~~a~~~G~~v~~~~~ 195 (350)
T cd08248 162 AGKRVLILGGSGGVGTFAIQLLKAWGAHVTTTCS 195 (350)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCeEEEEeC
Confidence 5999999999889999999999999999887654
No 412
>PF02585 PIG-L: GlcNAc-PI de-N-acetylase; InterPro: IPR003737 A number of the members of this family have been characterised as a probable N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase, (3.5.1.89 from EC) that catalyses the second step in glycosylphosphatidylinositol (GPI) biosynthesis [, ]. The family also includes a number of thiol biosynthesis proteins. ; PDB: 2XAD_C 2X9L_A 3DFK_A 3DFM_A 3DFF_A 2IXD_A 1UAN_A 1Q74_B 1Q7T_B 3DFI_A.
Probab=45.43 E-value=1.3e+02 Score=22.64 Aligned_cols=80 Identities=15% Similarity=0.093 Sum_probs=45.9
Q ss_pred CCCceEEEEEeCCCcch--------HHH--HHHHHHHHHHcCc-ceEEEeCCCCC--C--HHHHHHHHHHhcCCCCccEE
Q psy7981 39 DFEPGLAIVQVGGREDS--------NVY--IRMKMKAAKEIGI-DAQHVKLPRSI--T--EIELLSRLKKLNEDPSVHGI 103 (216)
Q Consensus 39 ~~~P~LaiI~vg~~~as--------~~Y--v~~k~k~a~~~Gi-~~~~~~l~~~~--~--~~el~~~I~~lN~D~~V~GI 103 (216)
|....++++.-|+.... ..- .+--.++|+.+|+ ++....||+.. . .+++.+.|.++-++-+.+-|
T Consensus 25 g~~v~vv~~t~G~~~~~~~~~~~~~~~~~R~~E~~~a~~~lGv~~~~~l~~~D~~~~~~~~~~~~~~l~~~i~~~~p~~V 104 (128)
T PF02585_consen 25 GHRVVVVTLTDGEAGHPDPTPWARELGEIRRAEARAAAEILGVENVIFLDFPDGQLPGWSWEELVRDLEDLIREFRPDVV 104 (128)
T ss_dssp T-EEEEEECE--TTTSSSSHHHHHSCHHHHHHHHHHHHHHCT-EEEEEEEECTTSCTCHHHHHHHHHHHHHHHHH-ESEE
T ss_pred CCeEEEEEecccccCCcccchhhHhHHHHHHHHHHHHHHHcCCceEEEeecCCCCcccccHHHHHHHHHHHHHHcCCCEE
Confidence 66677777777754311 111 2334567899999 88888888653 2 56676666666655555567
Q ss_pred EEeCCCCCCC-CCCHHHH
Q psy7981 104 IVQMPLDSDN-DINAMLV 120 (216)
Q Consensus 104 lvqlPL~~P~-~id~~~i 120 (216)
+...|- .. |.|-..+
T Consensus 105 ~t~~~~--~~gH~DH~~~ 120 (128)
T PF02585_consen 105 FTPDPD--DGGHPDHRAV 120 (128)
T ss_dssp EEE-ST--TS-SHHHHHH
T ss_pred EECCCC--CCCcHHHHHH
Confidence 777776 44 6664443
No 413
>cd06283 PBP1_RegR_EndR_KdgR_like Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR. Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR, all of which are members of the LacI-GalR family of bacterial transcription regulators. RegR regulates bacterial competence and the expression of virulence factors, including hyaluronidase. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=45.30 E-value=1.5e+02 Score=24.22 Aligned_cols=55 Identities=15% Similarity=0.062 Sum_probs=38.1
Q ss_pred CCcchHHHHHHHHHHHHHcCcceEEEeCCCCCCHHHHHHHHHHhcCCCCccEEEEeCC
Q psy7981 51 GREDSNVYIRMKMKAAKEIGIDAQHVKLPRSITEIELLSRLKKLNEDPSVHGIIVQMP 108 (216)
Q Consensus 51 ~~~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvqlP 108 (216)
+++-...+.+...++|++.|+.+..+.-. -+.++..+.++.+-. .+++||++.-+
T Consensus 10 ~~~~~~~~~~~i~~~a~~~g~~~~~~~~~--~~~~~~~~~~~~l~~-~~~dgiii~~~ 64 (267)
T cd06283 10 TNPFSSLVLKGIEDVCRAHGYQVLVCNSD--NDPEKEKEYLESLLA-YQVDGLIVNPT 64 (267)
T ss_pred ccccHHHHHHHHHHHHHHcCCEEEEEcCC--CCHHHHHHHHHHHHH-cCcCEEEEeCC
Confidence 45566677788899999999888765432 234455566666654 47999999644
No 414
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=45.29 E-value=20 Score=25.61 Aligned_cols=34 Identities=18% Similarity=0.261 Sum_probs=27.1
Q ss_pred eEEEecCCCcccHHHHHHhhhCC---CEEEEecCCCCC
Q psy7981 172 NAVVLGRSKIVGTPAAELLKWKH---ATVTVCHSKTKN 206 (216)
Q Consensus 172 ~vvViGrS~~VG~Pla~lL~~~~---ATVtichs~T~~ 206 (216)
++.+||-+++ |.-++.-|.+.| ..|+++.+++++
T Consensus 1 kI~iIG~G~m-g~al~~~l~~~g~~~~~v~~~~~r~~~ 37 (96)
T PF03807_consen 1 KIGIIGAGNM-GSALARGLLASGIKPHEVIIVSSRSPE 37 (96)
T ss_dssp EEEEESTSHH-HHHHHHHHHHTTS-GGEEEEEEESSHH
T ss_pred CEEEECCCHH-HHHHHHHHHHCCCCceeEEeeccCcHH
Confidence 5788987776 999999999999 999977555543
No 415
>PLN02529 lysine-specific histone demethylase 1
Probab=45.25 E-value=24 Score=35.95 Aligned_cols=54 Identities=13% Similarity=0.146 Sum_probs=41.6
Q ss_pred CcccCCHHHHHHHHHHhC-C--------------CCCCCeEEEecCCCcccHHHHHHhhhCCCEEEEecCC
Q psy7981 148 GFIPCTPNGVLELIKRTN-V--------------TIAGTNAVVLGRSKIVGTPAAELLKWKHATVTVCHSK 203 (216)
Q Consensus 148 ~~~PcTa~av~~lL~~~~-i--------------~l~Gk~vvViGrS~~VG~Pla~lL~~~~ATVtichs~ 203 (216)
.+.||.. +|++.|.+.+ | ....++|+|||.+.- |.-.|..|.++|.+|++.-.+
T Consensus 124 ~i~~ci~-~c~~~l~~~~~inc~vnp~~~~~~~~~~~~~~v~viGaG~a-Gl~aA~~l~~~g~~v~v~E~~ 192 (738)
T PLN02529 124 EYEHLIS-AAYDFLLYNGYINFGVSPSFASPIPEEGTEGSVIIVGAGLA-GLAAARQLLSFGFKVVVLEGR 192 (738)
T ss_pred hHHHHHH-HHHHHHHhCCCcceeecccccCCCCcccCCCCEEEECcCHH-HHHHHHHHHHcCCcEEEEecC
Confidence 3567776 7777776554 2 134689999998877 999999999999999998654
No 416
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=45.15 E-value=28 Score=32.92 Aligned_cols=35 Identities=23% Similarity=0.269 Sum_probs=28.8
Q ss_pred CCCCCeEEEecCCCcccHHHHHHhhhCCC-EEEEecC
Q psy7981 167 TIAGTNAVVLGRSKIVGTPAAELLKWKHA-TVTVCHS 202 (216)
Q Consensus 167 ~l~Gk~vvViGrS~~VG~Pla~lL~~~~A-TVtichs 202 (216)
...||+|+|||-+. +|.-+|..++..++ +||....
T Consensus 278 ~~~gk~VvVIGgG~-~g~e~A~~~~~~ga~~Vt~~~~ 313 (471)
T PRK12810 278 SAKGKHVVVIGGGD-TGMDCVGTAIRQGAKSVTQRDI 313 (471)
T ss_pred cCCCCEEEEECCcH-HHHHHHHHHHHcCCCeEEEccc
Confidence 45799999999885 69999988888887 7886654
No 417
>cd06323 PBP1_ribose_binding Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Members of this group are belonging to the type I periplasmic binding protein superfamily, whose members are involved in chemotaxis, ATP-binding cassette transport, and intercellular communication in central nervous system. The thermophilic and mesophilic ribose-binding proteins are structurally very similar, but differ substantially in thermal stability.
Probab=45.14 E-value=92 Score=25.62 Aligned_cols=53 Identities=19% Similarity=0.180 Sum_probs=37.7
Q ss_pred CCcchHHHHHHHHHHHHHcCcceEEEeCCCCCCHHHHHHHHHHhcCCCCccEEEEe
Q psy7981 51 GREDSNVYIRMKMKAAKEIGIDAQHVKLPRSITEIELLSRLKKLNEDPSVHGIIVQ 106 (216)
Q Consensus 51 ~~~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq 106 (216)
+++-.....+...+.|++.|+.+.... .+-+.++..+.++++... +++||++.
T Consensus 10 ~~~~~~~~~~~i~~~~~~~g~~v~~~~--~~~~~~~~~~~~~~~~~~-~~dgii~~ 62 (268)
T cd06323 10 NNPFFVTLKDGAQKEAKELGYELTVLD--AQNDAAKQLNDIEDLITR-GVDAIIIN 62 (268)
T ss_pred cCHHHHHHHHHHHHHHHHcCceEEecC--CCCCHHHHHHHHHHHHHc-CCCEEEEc
Confidence 355555666788899999998886543 334556667788877664 59999985
No 418
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=45.13 E-value=33 Score=32.70 Aligned_cols=37 Identities=22% Similarity=0.237 Sum_probs=29.0
Q ss_pred CCCCeEEEecCCCcccHHHHHHhhhCCC-EEEEecCCCC
Q psy7981 168 IAGTNAVVLGRSKIVGTPAAELLKWKHA-TVTVCHSKTK 205 (216)
Q Consensus 168 l~Gk~vvViGrS~~VG~Pla~lL~~~~A-TVtichs~T~ 205 (216)
..||+|+|||-++ +|.-.+..+++.++ .||+.+..+.
T Consensus 281 ~~gk~VvViGgG~-~g~d~a~~a~~~ga~~V~vv~~~~~ 318 (485)
T TIGR01317 281 AKGKKVVVIGGGD-TGADCVGTSLRHGAASVHQFEIMPK 318 (485)
T ss_pred CCCCEEEEECCcH-HHHHHHHHHHHcCCCEEEEEEecCC
Confidence 5799999999775 48887777777776 6999886654
No 419
>PTZ00058 glutathione reductase; Provisional
Probab=45.12 E-value=24 Score=34.58 Aligned_cols=34 Identities=6% Similarity=0.063 Sum_probs=30.6
Q ss_pred CCeEEEecCCCcccHHHHHHhhhCCCEEEEecCCC
Q psy7981 170 GTNAVVLGRSKIVGTPAAELLKWKHATVTVCHSKT 204 (216)
Q Consensus 170 Gk~vvViGrS~~VG~Pla~lL~~~~ATVtichs~T 204 (216)
+++|+|||-+ .+|--+|..|...|+.||+.+...
T Consensus 237 pk~VvIIGgG-~iGlE~A~~l~~~G~~Vtli~~~~ 270 (561)
T PTZ00058 237 AKRIGIAGSG-YIAVELINVVNRLGAESYIFARGN 270 (561)
T ss_pred CCEEEEECCc-HHHHHHHHHHHHcCCcEEEEEecc
Confidence 8999999988 569999999999999999998654
No 420
>cd04501 SGNH_hydrolase_like_4 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=44.98 E-value=1.5e+02 Score=23.31 Aligned_cols=98 Identities=19% Similarity=0.186 Sum_probs=52.1
Q ss_pred CCceEEEEEeCCCcch-----HHHH---HHHHHHHHHcCcceEEEeCCCCC-------------CHHHHHHHHHHhcCCC
Q psy7981 40 FEPGLAIVQVGGREDS-----NVYI---RMKMKAAKEIGIDAQHVKLPRSI-------------TEIELLSRLKKLNEDP 98 (216)
Q Consensus 40 ~~P~LaiI~vg~~~as-----~~Yv---~~k~k~a~~~Gi~~~~~~l~~~~-------------~~~el~~~I~~lN~D~ 98 (216)
.+|.+++|.+|.|... ..|. +...+.+++.|..+.....+... ...++-+.++++-++.
T Consensus 58 ~~~d~v~i~~G~ND~~~~~~~~~~~~~~~~li~~~~~~~~~~il~~~~p~~~~~~~~~~~~~~~~~~~~n~~~~~~a~~~ 137 (183)
T cd04501 58 LKPAVVIIMGGTNDIIVNTSLEMIKDNIRSMVELAEANGIKVILASPLPVDDYPWKPQWLRPANKLKSLNRWLKDYAREN 137 (183)
T ss_pred cCCCEEEEEeccCccccCCCHHHHHHHHHHHHHHHHHCCCcEEEEeCCCcCccccchhhcchHHHHHHHHHHHHHHHHHc
Confidence 5699999999998754 2344 34446667778877665543221 1235555666666554
Q ss_pred CccEEEEeCCCCCCCCCCHHHHhhhcCCCCCcccCCccchhHhhcC
Q psy7981 99 SVHGIIVQMPLDSDNDINAMLVTDSVSPEKDVDGLNTINEGRVAIG 144 (216)
Q Consensus 99 ~V~GIlvqlPL~~P~~id~~~i~~~I~p~KDVDG~~~~n~G~l~~~ 144 (216)
+|.-|=+...+ .+.-. ......--.||+||...|.-..+
T Consensus 138 ~v~~vd~~~~~--~~~~~-----~~~~~~~~~DgvHp~~~Gy~~~a 176 (183)
T cd04501 138 GLLFLDFYSPL--LDERN-----VGLKPGLLTDGLHPSREGYRVMA 176 (183)
T ss_pred CCCEEechhhh--hcccc-----ccccccccCCCCCCCHHHHHHHH
Confidence 43322222222 11110 01111122489998877765543
No 421
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA [] reveals an alpha/beta fold similar to that of the Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0577 protein, which binds ATP [], though UspA lacks ATP-binding activity.; GO: 0006950 response to stress; PDB: 3DLO_C 3QTB_A 2PFS_A 3TNJ_A 1JMV_D 3FH0_B 3FDX_B 3AB7_A 3AB8_A 2GM3_F ....
Probab=44.78 E-value=66 Score=23.11 Aligned_cols=46 Identities=22% Similarity=0.413 Sum_probs=37.6
Q ss_pred ccCCHHHHHHHHHHhCCCCCCCeEEEecCCC-------cccHHHHHHhhhCCCEEEEe
Q psy7981 150 IPCTPNGVLELIKRTNVTIAGTNAVVLGRSK-------IVGTPAAELLKWKHATVTVC 200 (216)
Q Consensus 150 ~PcTa~av~~lL~~~~i~l~Gk~vvViGrS~-------~VG~Pla~lL~~~~ATVtic 200 (216)
..-.+.++++..+..++++ +|+|++. +.|.-...++.+-.+.|.++
T Consensus 87 ~~~~~~~i~~~~~~~~~dl-----iv~G~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv 139 (140)
T PF00582_consen 87 SGDVADAIIEFAEEHNADL-----IVMGSRGRSGLERLLFGSVAEKLLRHAPCPVLVV 139 (140)
T ss_dssp ESSHHHHHHHHHHHTTCSE-----EEEESSSTTSTTTSSSHHHHHHHHHHTSSEEEEE
T ss_pred eeccchhhhhcccccccee-----EEEeccCCCCccCCCcCCHHHHHHHcCCCCEEEe
Confidence 3457799999999988765 9999887 67888888888888888876
No 422
>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=44.70 E-value=57 Score=28.52 Aligned_cols=52 Identities=29% Similarity=0.426 Sum_probs=37.8
Q ss_pred ccCCHHHHHHHHHHhCCCCCCCeEEEecCCCcccHHHHHHhhhCCCEEEEecC
Q psy7981 150 IPCTPNGVLELIKRTNVTIAGTNAVVLGRSKIVGTPAAELLKWKHATVTVCHS 202 (216)
Q Consensus 150 ~PcTa~av~~lL~~~~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~ATVtichs 202 (216)
+||.....+..++..++ -.|.+|+|.|-+..+|.-+..++...|+.|+.+.+
T Consensus 159 l~~~~~ta~~~~~~~~~-~~g~~vlI~g~~g~ig~~~~~~a~~~g~~vi~~~~ 210 (350)
T cd08274 159 FPCSYSTAENMLERAGV-GAGETVLVTGASGGVGSALVQLAKRRGAIVIAVAG 210 (350)
T ss_pred cccHHHHHHHHHhhcCC-CCCCEEEEEcCCcHHHHHHHHHHHhcCCEEEEEeC
Confidence 34443334444443333 36999999999999999999999999999877654
No 423
>PRK09426 methylmalonyl-CoA mutase; Reviewed
Probab=44.39 E-value=1.4e+02 Score=30.36 Aligned_cols=70 Identities=14% Similarity=0.136 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcchHHHHHHHHHHHHHcCcceEEEeCCCCCCHHHHHHHHHHhc
Q psy7981 22 IREGLKERVKKLKERLPDFEPGLAIVQVGGREDSNVYIRMKMKAAKEIGIDAQHVKLPRSITEIELLSRLKKLN 95 (216)
Q Consensus 22 i~~~ik~~v~~l~~~~~~~~P~LaiI~vg~~~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN 95 (216)
--+.+|.+.+.+.++ .|.+|+..+..+|.+ ....=.+-.....+..|+++.. -....+.+++.+...+-+
T Consensus 564 ~fE~LR~~~~~~~~~-~g~rpkV~LatlG~d-~H~~ra~fv~~~l~~~GfeV~~--~~~~~s~e~~v~aa~~~~ 633 (714)
T PRK09426 564 EFAAARALVEAFAEA-EGRRPRILVAKMGQD-GHDRGAKVIATAFADLGFDVDI--GPLFQTPEEAARQAVEND 633 (714)
T ss_pred HHHHHHHHHHHHHHh-cCCCceEEEEecCCc-chhHhHHHHHHHHHhCCeeEec--CCCCCCHHHHHHHHHHcC
Confidence 336788888776543 478999999999997 5666667778889999999932 123467788888886543
No 424
>PRK10528 multifunctional acyl-CoA thioesterase I and protease I and lysophospholipase L1; Provisional
Probab=44.11 E-value=1.7e+02 Score=23.71 Aligned_cols=93 Identities=15% Similarity=0.242 Sum_probs=48.8
Q ss_pred CCceEEEEEeCCCcc-----hHHHHH---HHHHHHHHcCcceEEEe--CCCCCCH---HHHHHHHHHhcCCCCccEEEEe
Q psy7981 40 FEPGLAIVQVGGRED-----SNVYIR---MKMKAAKEIGIDAQHVK--LPRSITE---IELLSRLKKLNEDPSVHGIIVQ 106 (216)
Q Consensus 40 ~~P~LaiI~vg~~~a-----s~~Yv~---~k~k~a~~~Gi~~~~~~--l~~~~~~---~el~~~I~~lN~D~~V~GIlvq 106 (216)
.+|.+++|.+|-|.. ...|.+ ...+.+++.|....... +|..... +++-+.++++.++.+++=|
T Consensus 70 ~~pd~Vii~~GtND~~~~~~~~~~~~~l~~li~~~~~~~~~~ill~~~~P~~~~~~~~~~~~~~~~~~a~~~~v~~i--- 146 (191)
T PRK10528 70 HQPRWVLVELGGNDGLRGFPPQQTEQTLRQIIQDVKAANAQPLLMQIRLPANYGRRYNEAFSAIYPKLAKEFDIPLL--- 146 (191)
T ss_pred cCCCEEEEEeccCcCccCCCHHHHHHHHHHHHHHHHHcCCCEEEEEeecCCcccHHHHHHHHHHHHHHHHHhCCCcc---
Confidence 468999999999874 233333 33344455576665543 4543322 3444556666655544311
Q ss_pred CCCCCCCCCCHHHHhhhcCCCC-CcccCCccchhHhhcC
Q psy7981 107 MPLDSDNDINAMLVTDSVSPEK-DVDGLNTINEGRVAIG 144 (216)
Q Consensus 107 lPL~~P~~id~~~i~~~I~p~K-DVDG~~~~n~G~l~~~ 144 (216)
|++ + -.....|+- -.||+||.-.|.-...
T Consensus 147 -d~~-----~---~~~~~~~~~~~~DGiHpn~~Gy~~~A 176 (191)
T PRK10528 147 -PFF-----M---EEVYLKPQWMQDDGIHPNRDAQPFIA 176 (191)
T ss_pred -HHH-----H---HhhccCHhhcCCCCCCCCHHHHHHHH
Confidence 221 0 001122221 1499999888765544
No 425
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=43.99 E-value=32 Score=26.31 Aligned_cols=36 Identities=22% Similarity=0.109 Sum_probs=23.4
Q ss_pred CeEEEecCCCcccHH---HHHHhhhCCCEEEEecCCCCC
Q psy7981 171 TNAVVLGRSKIVGTP---AAELLKWKHATVTVCHSKTKN 206 (216)
Q Consensus 171 k~vvViGrS~~VG~P---la~lL~~~~ATVtichs~T~~ 206 (216)
|+++|||.|.--+++ +...|.++|..|.-.|-+...
T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l~~~G~~v~~Vnp~~~~ 39 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNLKAAGYEVYPVNPKGGE 39 (116)
T ss_dssp -EEEEET--SSTTSHHHHHHHHHHHTT-EEEEESTTCSE
T ss_pred CEEEEEcccCCCCChHHHHHHHHHhCCCEEEEECCCceE
Confidence 689999988765554 555556688899999877643
No 426
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=43.98 E-value=42 Score=34.64 Aligned_cols=49 Identities=18% Similarity=0.140 Sum_probs=37.1
Q ss_pred CHHHHHHHHHHhCCCCCCCeEEEecCCCcccHHHHHHhhhCCCEEEEecCCCC
Q psy7981 153 TPNGVLELIKRTNVTIAGTNAVVLGRSKIVGTPAAELLKWKHATVTVCHSKTK 205 (216)
Q Consensus 153 Ta~av~~lL~~~~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~ATVtichs~T~ 205 (216)
|...+.++.++.. .+++++|||-+ .+|.-+|..|.+.|..||++|....
T Consensus 131 t~~d~~~l~~~~~---~~k~vvVIGgG-~iGlE~A~~L~~~G~~VtvVe~~~~ 179 (847)
T PRK14989 131 TIEDLNAIEACAR---RSKRGAVVGGG-LLGLEAAGALKNLGVETHVIEFAPM 179 (847)
T ss_pred CHHHHHHHHHHHh---cCCeEEEECCC-HHHHHHHHHHHHcCCeEEEEecccc
Confidence 4444444444322 57999999976 6799999999999999999997543
No 427
>PRK06116 glutathione reductase; Validated
Probab=43.71 E-value=36 Score=31.66 Aligned_cols=35 Identities=11% Similarity=0.084 Sum_probs=30.7
Q ss_pred CCCeEEEecCCCcccHHHHHHhhhCCCEEEEecCCC
Q psy7981 169 AGTNAVVLGRSKIVGTPAAELLKWKHATVTVCHSKT 204 (216)
Q Consensus 169 ~Gk~vvViGrS~~VG~Pla~lL~~~~ATVtichs~T 204 (216)
.+++|+|||-+ .+|.-+|..|.+.+..||+++...
T Consensus 166 ~~~~vvViGgG-~~g~E~A~~l~~~g~~Vtlv~~~~ 200 (450)
T PRK06116 166 LPKRVAVVGAG-YIAVEFAGVLNGLGSETHLFVRGD 200 (450)
T ss_pred cCCeEEEECCC-HHHHHHHHHHHHcCCeEEEEecCC
Confidence 47999999977 569999999999999999998754
No 428
>cd04502 SGNH_hydrolase_like_7 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=43.67 E-value=1.6e+02 Score=23.06 Aligned_cols=96 Identities=18% Similarity=0.191 Sum_probs=46.4
Q ss_pred CCceEEEEEeCCCcc-----hHHH---HHHHHHHHHHcC--cceEEEeCCCCCC-------HHHHHHHHHHhcC-CCCcc
Q psy7981 40 FEPGLAIVQVGGRED-----SNVY---IRMKMKAAKEIG--IDAQHVKLPRSIT-------EIELLSRLKKLNE-DPSVH 101 (216)
Q Consensus 40 ~~P~LaiI~vg~~~a-----s~~Y---v~~k~k~a~~~G--i~~~~~~l~~~~~-------~~el~~~I~~lN~-D~~V~ 101 (216)
.+|.+++|.+|.|.. ...| .+...+.+++.+ ........+.... ..++-+.++++.+ +.+++
T Consensus 49 ~~p~~vvi~~G~ND~~~~~~~~~~~~~~~~lv~~i~~~~~~~~iil~~~~p~~~~~~~~~~~~~~n~~~~~~a~~~~~v~ 128 (171)
T cd04502 49 YQPRRVVLYAGDNDLASGRTPEEVLRDFRELVNRIRAKLPDTPIAIISIKPSPARWALRPKIRRFNALLKELAETRPNLT 128 (171)
T ss_pred CCCCEEEEEEecCcccCCCCHHHHHHHHHHHHHHHHHHCCCCcEEEEEecCCCcchhhHHHHHHHHHHHHHHHhcCCCeE
Confidence 579999999998763 2234 344445555543 4444444322221 1234445555544 33444
Q ss_pred EEEEeCCCCCCCCCCHHHHhhhcCCCC-CcccCCccchhHhhc
Q psy7981 102 GIIVQMPLDSDNDINAMLVTDSVSPEK-DVDGLNTINEGRVAI 143 (216)
Q Consensus 102 GIlvqlPL~~P~~id~~~i~~~I~p~K-DVDG~~~~n~G~l~~ 143 (216)
=|=+.-++ .+.-. ...+.. -.||+||...|.-..
T Consensus 129 ~vD~~~~~--~~~~~------~~~~~~~~~DGlH~n~~Gy~~~ 163 (171)
T cd04502 129 YIDVASPM--LDADG------KPRAELFQEDGLHLNDAGYALW 163 (171)
T ss_pred EEECcHHH--hCCCC------CcChhhcCCCCCCCCHHHHHHH
Confidence 22222222 11100 011111 249999988776544
No 429
>cd07014 S49_SppA Signal peptide peptidase A. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is an intramembrane enzyme found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be ClpP-like serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain, cleaving peptide bonds in the plane of the lipid bilayer. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal p
Probab=43.57 E-value=32 Score=27.96 Aligned_cols=32 Identities=13% Similarity=0.306 Sum_probs=27.1
Q ss_pred eCCCCCCHHHHHHHHHHhcCCCCccEEEEeCC
Q psy7981 77 KLPRSITEIELLSRLKKLNEDPSVHGIIVQMP 108 (216)
Q Consensus 77 ~l~~~~~~~el~~~I~~lN~D~~V~GIlvqlP 108 (216)
......+-+++.+.++++++|++|.+|++..-
T Consensus 17 ~~~~~~~~~~l~~~l~~a~~d~~v~~vvl~~~ 48 (177)
T cd07014 17 DTQGNVSGDTTAAQIRDARLDPKVKAIVLRVN 48 (177)
T ss_pred CCCCCcCHHHHHHHHHHHhcCCCceEEEEEee
Confidence 34456788999999999999999999999853
No 430
>COG1103 Archaea-specific pyridoxal phosphate-dependent enzymes [General function prediction only]
Probab=43.53 E-value=1e+02 Score=28.37 Aligned_cols=136 Identities=17% Similarity=0.291 Sum_probs=86.8
Q ss_pred CCCcchHHHHHHHHHHHHHcCcceEEEeC---CC-CCCHHHHHHHHHHhcCC--CCccEEEEeCCCCCCCCCCHHHHhhh
Q psy7981 50 GGREDSNVYIRMKMKAAKEIGIDAQHVKL---PR-SITEIELLSRLKKLNED--PSVHGIIVQMPLDSDNDINAMLVTDS 123 (216)
Q Consensus 50 g~~~as~~Yv~~k~k~a~~~Gi~~~~~~l---~~-~~~~~el~~~I~~lN~D--~~V~GIlvqlPL~~P~~id~~~i~~~ 123 (216)
..+.--.+|+ +|++.|.++....- |+ .++.+..-+.|++.-+. +.+-=.++..|=.+--.+...+=...
T Consensus 106 D~~aHYttyv-----AAEragl~v~eVp~tg~Pey~i~~e~y~~viee~~~~~g~~~~lallTh~Dg~YGNl~Dakkva~ 180 (382)
T COG1103 106 DSLAHYTTYV-----AAERAGLNVAEVPNTGYPEYKITPEGYAEVIEEVKDEGGDPPALALLTHVDGEYGNLADAKKVAK 180 (382)
T ss_pred cCcchHHHHH-----HHHhcCCeEEecCCCCCCceEecHHHHHHHHHHHHhccCCCceEEEEeccCCCcCCchhhHHHHH
Confidence 3344445565 79999998765431 11 14667777777777665 33555566666422223433333446
Q ss_pred cCCCCCcccC--CccchhHhhcC-----------CCC-CcccCCHHHHHHH--------HHHhCCCCCCCeEEEecCCCc
Q psy7981 124 VSPEKDVDGL--NTINEGRVAIG-----------DMN-GFIPCTPNGVLEL--------IKRTNVTIAGTNAVVLGRSKI 181 (216)
Q Consensus 124 I~p~KDVDG~--~~~n~G~l~~~-----------~~~-~~~PcTa~av~~l--------L~~~~i~l~Gk~vvViGrS~~ 181 (216)
|.-+++|.-+ +.+.+|+|-.. +.. ++..|.|-||+.. |+..|-...-|.|-..|.+ .
T Consensus 181 ic~e~gvPlllN~AYt~Grmpvs~ke~g~DFiVgSGHKsmAAs~PiGvl~~~eE~ae~V~r~Sg~~~~~KEvellGCT-~ 259 (382)
T COG1103 181 ICREYGVPLLLNCAYTVGRMPVSGKEIGADFIVGSGHKSMAASAPIGVLAMSEEWAEIVLRRSGRAFPKKEVELLGCT-V 259 (382)
T ss_pred HHHHcCCceEeecceeeccccccccccCCCEEEecCccchhccCCeeEEeehhHHHHHHHhhcccccccceeeeeccc-c
Confidence 7778888876 35677877542 112 5666777777654 4445667888999999999 7
Q ss_pred ccHHHHHHhh
Q psy7981 182 VGTPAAELLK 191 (216)
Q Consensus 182 VG~Pla~lL~ 191 (216)
-|.|+..|+.
T Consensus 260 rGapivTlmA 269 (382)
T COG1103 260 RGAPIVTLMA 269 (382)
T ss_pred cCchHHHHHh
Confidence 7999999985
No 431
>COG0655 WrbA Multimeric flavodoxin WrbA [General function prediction only]
Probab=43.52 E-value=1.7e+02 Score=24.28 Aligned_cols=36 Identities=17% Similarity=0.321 Sum_probs=27.9
Q ss_pred EEEeCCC--cchHHHHHHHHHHHHHcCcceEEEeCCCC
Q psy7981 46 IVQVGGR--EDSNVYIRMKMKAAKEIGIDAQHVKLPRS 81 (216)
Q Consensus 46 iI~vg~~--~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~ 81 (216)
.|.+..+ ......++.-.+.+++.|++++.+.+++.
T Consensus 5 ~I~gs~r~~G~t~~l~~~~~~g~~~~G~E~~~i~v~~~ 42 (207)
T COG0655 5 GINGSPRSNGNTAKLAEAVLEGAEEAGAEVEIIRLPEK 42 (207)
T ss_pred EEEecCCCCCcHHHHHHHHHHHHHHcCCEEEEEEecCC
Confidence 3444443 46667788899999999999999999975
No 432
>COG5322 Predicted dehydrogenase [General function prediction only]
Probab=43.42 E-value=44 Score=30.54 Aligned_cols=104 Identities=17% Similarity=0.237 Sum_probs=67.3
Q ss_pred CccEEEEeCCCCCCCCCC------HHHHhhhcCCCCC----cccCCcc-----chhHhhcCCC-C-Cccc------CCHH
Q psy7981 99 SVHGIIVQMPLDSDNDIN------AMLVTDSVSPEKD----VDGLNTI-----NEGRVAIGDM-N-GFIP------CTPN 155 (216)
Q Consensus 99 ~V~GIlvqlPL~~P~~id------~~~i~~~I~p~KD----VDG~~~~-----n~G~l~~~~~-~-~~~P------cTa~ 155 (216)
-+.|+++..||- |+.+- .++++++..-.+| |=|+--+ |+|+-..-.. . .|.| =|+.
T Consensus 70 vieg~l~~~pll-pe~~~s~pkaatrrvl~a~~~a~~~Ga~V~gLGgFssIVgn~~~n~q~~~~e~t~~~~ttgns~Tay 148 (351)
T COG5322 70 VIEGYLVESPLL-PEMLRSRPKAATRRVLNAMALAQKLGADVTGLGGFSSIVGNLGQNVQVRNVELTFTRFTTGNSHTAY 148 (351)
T ss_pred EEEEEEEccccC-HHHHhhCHHHHHHHHHHHHHHHHHcCCeEEeecchhhhhccccccccccceEEEEEecccCCccchH
Confidence 377999999984 54332 3556666655444 4343221 3332221000 0 2333 3444
Q ss_pred H----HHHHHHHhCCCCCCCeEEEecCCCcccHHHHHHhhhCCCEEEEecCC
Q psy7981 156 G----VLELIKRTNVTIAGTNAVVLGRSKIVGTPAAELLKWKHATVTVCHSK 203 (216)
Q Consensus 156 a----v~~lL~~~~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~ATVtichs~ 203 (216)
+ |++=.+..|++++...|.|+|....||.-++.+|..+..-..+.|+.
T Consensus 149 aa~r~Vl~~~~~lGidlsqatvaivGa~G~Ia~~Iar~la~~~~~~~ll~r~ 200 (351)
T COG5322 149 AACRQVLKHFAQLGIDLSQATVAIVGATGDIASAIARWLAPKVGVKELLLRD 200 (351)
T ss_pred HHHHHHHHHHHHhCcCHHHCeEEEecCCchHHHHHHHHhccccCEEEEeccc
Confidence 4 44455567999999999999999999999999999998888888854
No 433
>PF13458 Peripla_BP_6: Periplasmic binding protein; PDB: 4EVS_A 4EY3_A 4EYG_B 4EYK_A 3H5L_B 3TD9_A 3EAF_A 1Z18_A 1Z17_A 2LIV_A ....
Probab=43.22 E-value=87 Score=27.05 Aligned_cols=122 Identities=15% Similarity=0.149 Sum_probs=61.0
Q ss_pred CcceEEEeCCCCCCHHHHHHHHHHhcCCCCccEEEEeCCCCCCCCCCHHHHhhhcCCCCCcccCCccchhHhhcCCCCC-
Q psy7981 70 GIDAQHVKLPRSITEIELLSRLKKLNEDPSVHGIIVQMPLDSDNDINAMLVTDSVSPEKDVDGLNTINEGRVAIGDMNG- 148 (216)
Q Consensus 70 Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvqlPL~~P~~id~~~i~~~I~p~KDVDG~~~~n~G~l~~~~~~~- 148 (216)
|.+++++..+...+.+...+..++|-.+++|+.|+- |+ .+ -....+...+ ....+.-+++...-.-..++ ..
T Consensus 40 G~~i~l~~~D~~~~~~~a~~~~~~l~~~~~v~~vvg--~~--~s-~~~~~~~~~~-~~~~ip~i~~~~~~~~~~~~-~~f 112 (343)
T PF13458_consen 40 GRKIELVVYDDGGDPAQAVQAARKLIDDDGVDAVVG--PL--SS-AQAEAVAPIA-EEAGIPYISPSASSPSPDSP-NVF 112 (343)
T ss_dssp TEEEEEEEEE-TT-HHHHHHHHHHHHHTSTESEEEE--SS--SH-HHHHHHHHHH-HHHT-EEEESSGGGGTTTHT-TEE
T ss_pred CccceeeeccCCCChHHHHHHHHHhhhhcCcEEEEe--cC--Cc-HHHHHHHHHH-HhcCcEEEEeeccCCCCCCC-cEE
Confidence 667777776666677777778888877777776665 22 00 1111222221 12234444433211110110 11
Q ss_pred -cccCCHHHHHHHHHHhCCCCCCCeEEEecCCCcccHHHHHHh----hhCCCEEE
Q psy7981 149 -FIPCTPNGVLELIKRTNVTIAGTNAVVLGRSKIVGTPAAELL----KWKHATVT 198 (216)
Q Consensus 149 -~~PcTa~av~~lL~~~~i~l~Gk~vvViGrS~~VG~Pla~lL----~~~~ATVt 198 (216)
+.|-.....-.++++..-...++++.+|....--|+.++..+ ...|.+|.
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~g~~~v~iv~~~~~~g~~~~~~~~~~~~~~G~~vv 167 (343)
T PF13458_consen 113 RLSPSDSQQAAALAEYLAKKLGAKKVAIVYPDDPYGRSLAEAFRKALEAAGGKVV 167 (343)
T ss_dssp ESS--HHHHHHHHHHHHHHTTTTSEEEEEEESSHHHHHHHHHHHHHHHHTTCEEE
T ss_pred EEeccccHHHHHHHHHHHHHcCCcEEEEEecCchhhhHHHHHHHHHHhhcCceec
Confidence 233333334444443222234799999998887888777555 34577763
No 434
>cd06281 PBP1_LacI_like_5 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=43.17 E-value=1.5e+02 Score=24.71 Aligned_cols=53 Identities=11% Similarity=0.041 Sum_probs=35.0
Q ss_pred CcchHHHHHHHHHHHHHcCcceEEEeCCCCCCHHHHHHHHHHhcCCCCccEEEEeC
Q psy7981 52 REDSNVYIRMKMKAAKEIGIDAQHVKLPRSITEIELLSRLKKLNEDPSVHGIIVQM 107 (216)
Q Consensus 52 ~~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvql 107 (216)
++-...-.+...+.|++.|..+....-. .+.+...+.++.+-. ..|+||++.-
T Consensus 11 ~~~~~~~~~~i~~~a~~~g~~~~~~~~~--~~~~~~~~~i~~l~~-~~vdgii~~~ 63 (269)
T cd06281 11 NPLLAQLFSGAEDRLRAAGYSLLIANSL--NDPERELEILRSFEQ-RRMDGIIIAP 63 (269)
T ss_pred cccHHHHHHHHHHHHHHcCCEEEEEeCC--CChHHHHHHHHHHHH-cCCCEEEEec
Confidence 4444445577789999999987766433 344555556666544 4799999963
No 435
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=43.08 E-value=24 Score=36.79 Aligned_cols=35 Identities=26% Similarity=0.171 Sum_probs=31.4
Q ss_pred CCCCeEEEecCCCcccHHHHHHhhhCCCEEEEecCC
Q psy7981 168 IAGTNAVVLGRSKIVGTPAAELLKWKHATVTVCHSK 203 (216)
Q Consensus 168 l~Gk~vvViGrS~~VG~Pla~lL~~~~ATVtichs~ 203 (216)
-.||+|+|||-+.- |.-.|..|.++|..||+.-..
T Consensus 304 ~~gkkVaVIGsGPA-GLsaA~~Lar~G~~VtVfE~~ 338 (944)
T PRK12779 304 AVKPPIAVVGSGPS-GLINAYLLAVEGFPVTVFEAF 338 (944)
T ss_pred CCCCeEEEECCCHH-HHHHHHHHHHCCCeEEEEeeC
Confidence 46999999998877 999999999999999998654
No 436
>PLN02507 glutathione reductase
Probab=42.85 E-value=26 Score=33.46 Aligned_cols=35 Identities=29% Similarity=0.283 Sum_probs=30.6
Q ss_pred CCCeEEEecCCCcccHHHHHHhhhCCCEEEEecCCC
Q psy7981 169 AGTNAVVLGRSKIVGTPAAELLKWKHATVTVCHSKT 204 (216)
Q Consensus 169 ~Gk~vvViGrS~~VG~Pla~lL~~~~ATVtichs~T 204 (216)
.+++++|||.+ .+|-=+|..|.+.|..||++|...
T Consensus 202 ~~k~vvVIGgG-~ig~E~A~~l~~~G~~Vtli~~~~ 236 (499)
T PLN02507 202 LPKRAVVLGGG-YIAVEFASIWRGMGATVDLFFRKE 236 (499)
T ss_pred cCCeEEEECCc-HHHHHHHHHHHHcCCeEEEEEecC
Confidence 37899999976 569999999999999999999765
No 437
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=42.82 E-value=54 Score=33.36 Aligned_cols=48 Identities=23% Similarity=0.219 Sum_probs=36.2
Q ss_pred CHHHHHHHHHHhCCCCCCCeEEEecCCCcccHHHHHHhhhCCCEEEEecCCC
Q psy7981 153 TPNGVLELIKRTNVTIAGTNAVVLGRSKIVGTPAAELLKWKHATVTVCHSKT 204 (216)
Q Consensus 153 Ta~av~~lL~~~~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~ATVtichs~T 204 (216)
|..-+-++.+... .|++|+|||-+ .+|.-+|..|.+.|..||+.|...
T Consensus 126 t~~d~~~i~~~~~---~~k~vvVVGgG-~~GlE~A~~L~~~G~~Vtvv~~~~ 173 (785)
T TIGR02374 126 TIEDLDAIMAMAQ---RFKKAAVIGGG-LLGLEAAVGLQNLGMDVSVIHHAP 173 (785)
T ss_pred CHHHHHHHHHHhh---cCCeEEEECCC-HHHHHHHHHHHhcCCeEEEEccCC
Confidence 4434444444332 58999999987 569999999999999999998654
No 438
>cd06290 PBP1_LacI_like_9 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=42.80 E-value=1.1e+02 Score=25.17 Aligned_cols=52 Identities=12% Similarity=0.041 Sum_probs=33.4
Q ss_pred CcchHHHHHHHHHHHHHcCcceEEEeCCCCCCHHHHHHHHHHhcCCCCccEEEEe
Q psy7981 52 REDSNVYIRMKMKAAKEIGIDAQHVKLPRSITEIELLSRLKKLNEDPSVHGIIVQ 106 (216)
Q Consensus 52 ~~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq 106 (216)
++--....+.....|++.|..+....- +.++++..+.++.+- ...++||++.
T Consensus 11 ~~~~~~~~~gi~~~~~~~gy~~~~~~~--~~~~~~~~~~i~~l~-~~~~dgiii~ 62 (265)
T cd06290 11 SPFYGRILKGMERGLNGSGYSPIIATG--HWNQSRELEALELLK-SRRVDALILL 62 (265)
T ss_pred CchHHHHHHHHHHHHHHCCCEEEEEeC--CCCHHHHHHHHHHHH-HCCCCEEEEe
Confidence 444445566777889999988766543 334455555555552 3458899996
No 439
>cd06304 PBP1_BmpA_like Periplasmic binding component of a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. Periplasmic binding component of a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. These outer membrane proteins include Med, a cell-surface localized protein regulating the competence transcription factor gene comK in Bacillus subtilis, and PnrA, a periplasmic purine nucleoside binding protein of an ATP-binding cassette (ABC) transport system in Treponema pallidum. All contain the type I periplasmic sugar-binding protein-like fold.
Probab=42.76 E-value=1.3e+02 Score=25.08 Aligned_cols=44 Identities=20% Similarity=0.225 Sum_probs=30.0
Q ss_pred HHHHHHHHHHcCcceEEEeCCCCCCHHHHHHHHHHhcCCCCccEEEEe
Q psy7981 59 IRMKMKAAKEIGIDAQHVKLPRSITEIELLSRLKKLNEDPSVHGIIVQ 106 (216)
Q Consensus 59 v~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq 106 (216)
++...+.+++.|.++..+.-+ +++...+.++.+-. .+|+||++.
T Consensus 20 ~~gi~~~~~~~gy~~~~~~~~---~~~~~~~~~~~l~~-~~vdgiii~ 63 (260)
T cd06304 20 YEGLEKAEKELGVEVKYVESV---EDADYEPNLRQLAA-QGYDLIFGV 63 (260)
T ss_pred HHHHHHHHHhcCceEEEEecC---CHHHHHHHHHHHHH-cCCCEEEEC
Confidence 467778899999987775433 33444566666544 368999994
No 440
>cd06332 PBP1_aromatic_compounds_like Type I periplasmic binding proteins of active transport systems that are predicted to be involved in transport of aromatic compounds such as 2-nitrobenzoic acid and alkylbenzenes. This group includes the type I periplasmic binding proteins of active transport systems that are predicted to be involved in transport of aromatic compounds such as 2-nitrobenzoic acid and alkylbenzenes; their substrate specificities are not well characterized, however. Members also exhibit close similarity to active transport systems for short chain amides and/or urea found in bacteria and archaea.
Probab=42.75 E-value=2.2e+02 Score=24.42 Aligned_cols=49 Identities=16% Similarity=0.024 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHcC-----cceEEEeCCCCCCHHHHHHHHHHhcCCCCccEEEE
Q psy7981 57 VYIRMKMKAAKEIG-----IDAQHVKLPRSITEIELLSRLKKLNEDPSVHGIIV 105 (216)
Q Consensus 57 ~Yv~~k~k~a~~~G-----i~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlv 105 (216)
.+.+.-+.++++.| .++++...+...+.+...+.+++|-+++.|++|+.
T Consensus 18 ~~~~g~~~a~~~~~~~i~G~~i~l~~~d~~~~~~~~~~~~~~l~~~~~v~~iig 71 (333)
T cd06332 18 DIRDGFELALKQLGGKLGGRPVEVVVEDDELKPDVAVQAARKLIEQDKVDVVVG 71 (333)
T ss_pred HHHHHHHHHHHHhCCCcCCeEEEEEEecCCCCHHHHHHHHHHHHHHcCCcEEEc
Confidence 56677777777774 33566666666677888888999887788999875
No 441
>cd06288 PBP1_sucrose_transcription_regulator Ligand-binding domain of DNA-binding regulatory proteins specific to sucrose that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of DNA-binding regulatory proteins specific to sucrose that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=42.72 E-value=1.9e+02 Score=23.78 Aligned_cols=53 Identities=23% Similarity=0.075 Sum_probs=34.4
Q ss_pred CcchHHHHHHHHHHHHHcCcceEEEeCCCCCCHHHHHHHHHHhcCCCCccEEEEeC
Q psy7981 52 REDSNVYIRMKMKAAKEIGIDAQHVKLPRSITEIELLSRLKKLNEDPSVHGIIVQM 107 (216)
Q Consensus 52 ~~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvql 107 (216)
++-.....+...+.|++.|+....+....+ .++..+.++.+- ...++||++..
T Consensus 12 ~~~~~~~~~~i~~~~~~~g~~~~~~~~~~~--~~~~~~~~~~l~-~~~~dgiii~~ 64 (269)
T cd06288 12 TPFAVEIILGAQDAAREHGYLLLVVNTGGD--DELEAEAVEALL-DHRVDGIIYAT 64 (269)
T ss_pred CccHHHHHHHHHHHHHHCCCEEEEEeCCCC--HHHHHHHHHHHH-HcCCCEEEEec
Confidence 344445567788999999988876654433 344445555553 35789999964
No 442
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=42.67 E-value=41 Score=35.57 Aligned_cols=47 Identities=28% Similarity=0.306 Sum_probs=0.0
Q ss_pred HHHHHHh----CCCCCCCeEEEecCCCcccHHHHHHhhhC-CC-EEEEecCCCC
Q psy7981 158 LELIKRT----NVTIAGTNAVVLGRSKIVGTPAAELLKWK-HA-TVTVCHSKTK 205 (216)
Q Consensus 158 ~~lL~~~----~i~l~Gk~vvViGrS~~VG~Pla~lL~~~-~A-TVtichs~T~ 205 (216)
+++|+.+ .....||+|+||| +..+|.=+|..+.+. |+ .||+++..+.
T Consensus 650 vefL~~~~~~~~~~~~GK~VVVIG-GGnvAmD~Ar~a~Rl~Ga~kVtLVyRr~~ 702 (1012)
T TIGR03315 650 LEFLRAFKEGPTINPLGKHVVVVG-GGNTAMDAARAALRVPGVEKVTVVYRRTK 702 (1012)
T ss_pred HHHHHHhhccccccccCCeEEEEC-CCHHHHHHHHHHHHhCCCceEEEEEccCc
No 443
>KOG3035|consensus
Probab=42.63 E-value=1.1e+02 Score=27.10 Aligned_cols=53 Identities=21% Similarity=0.364 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcch-----------------------HHHHHHHHHHHHHcCcceEEE
Q psy7981 20 GDIREGLKERVKKLKERLPDFEPGLAIVQVGGREDS-----------------------NVYIRMKMKAAKEIGIDAQHV 76 (216)
Q Consensus 20 ~~i~~~ik~~v~~l~~~~~~~~P~LaiI~vg~~~as-----------------------~~Yv~~k~k~a~~~Gi~~~~~ 76 (216)
.+..+++|+-++.|+. ..|.-.||.++..|-. ..|.+...+.|+++|+.+...
T Consensus 96 ~Ey~dNlr~iv~~lks----~~~~~riIlitPpp~de~~~~~~~~e~~~~~~~RtNe~~~~Ya~ac~~la~e~~l~~vdl 171 (245)
T KOG3035|consen 96 EEYKDNLRKIVSHLKS----LSPETRIILITPPPVDEEAWEKQEQEPYVLGPERTNETVGTYAKACANLAQEIGLYVVDL 171 (245)
T ss_pred HHHHHHHHHHHHHhhc----cCCcceEEEecCCCcCHHHHHHHhccchhccchhhhhHHHHHHHHHHHHHHHhCCeeeeH
Confidence 4677899999999973 5699999999876533 368888999999999887654
No 444
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=42.54 E-value=55 Score=31.90 Aligned_cols=49 Identities=16% Similarity=0.180 Sum_probs=37.2
Q ss_pred HHHHHHHHHhCC----------CCCCCeEEEecCCCcccHHHHHHhhhCCCEEEEecCCC
Q psy7981 155 NGVLELIKRTNV----------TIAGTNAVVLGRSKIVGTPAAELLKWKHATVTVCHSKT 204 (216)
Q Consensus 155 ~av~~lL~~~~i----------~l~Gk~vvViGrS~~VG~Pla~lL~~~~ATVtichs~T 204 (216)
+|+++-.++++. ...|.+|+|+|.+.+ |.-....+...||.|+++....
T Consensus 140 ~Av~~aa~~~~~~~~g~~taaG~~pg~kVlViGaG~i-GL~Ai~~Ak~lGA~V~a~D~~~ 198 (509)
T PRK09424 140 RAVIEAAHEFGRFFTGQITAAGKVPPAKVLVIGAGVA-GLAAIGAAGSLGAIVRAFDTRP 198 (509)
T ss_pred HHHHHHHHHhcccCCCceeccCCcCCCEEEEECCcHH-HHHHHHHHHHCCCEEEEEeCCH
Confidence 556666666653 346999999998865 9888888888899998887653
No 445
>KOG0023|consensus
Probab=42.43 E-value=66 Score=29.98 Aligned_cols=59 Identities=24% Similarity=0.331 Sum_probs=41.6
Q ss_pred CCHHHHHHHHHHhCCCCCCCeEEEecCCCcccHHHHHHhhhCCCEEEEecCCCCChHHHHh
Q psy7981 152 CTPNGVLELIKRTNVTIAGTNAVVLGRSKIVGTPAAELLKWKHATVTVCHSKTKNIQDVVK 212 (216)
Q Consensus 152 cTa~av~~lL~~~~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~ATVtichs~T~~l~~~~k 212 (216)
|.=--|..=|+++|.. .|+++.|+|-+. +|-=--..=..-|+.||+..+-++.-++.++
T Consensus 165 CaGITvYspLk~~g~~-pG~~vgI~GlGG-LGh~aVq~AKAMG~rV~vis~~~~kkeea~~ 223 (360)
T KOG0023|consen 165 CAGITVYSPLKRSGLG-PGKWVGIVGLGG-LGHMAVQYAKAMGMRVTVISTSSKKKEEAIK 223 (360)
T ss_pred hcceEEeehhHHcCCC-CCcEEEEecCcc-cchHHHHHHHHhCcEEEEEeCCchhHHHHHH
Confidence 4333356668999999 999999999999 7863333333458999998776655555554
No 446
>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin
Probab=42.28 E-value=56 Score=28.48 Aligned_cols=48 Identities=21% Similarity=0.203 Sum_probs=32.9
Q ss_pred cCCHHHHHHHHHHhCCCCCCCeEEEe-cCCCcccHHHHHHhhhCCCEEEEe
Q psy7981 151 PCTPNGVLELIKRTNVTIAGTNAVVL-GRSKIVGTPAAELLKWKHATVTVC 200 (216)
Q Consensus 151 PcTa~av~~lL~~~~i~l~Gk~vvVi-GrS~~VG~Pla~lL~~~~ATVtic 200 (216)
|+.+..+..+++... +.|.+++|+ |-+.-||.-...+....|++|+..
T Consensus 126 ~~~~~ta~~~~~~~~--~~~~~vlv~~~g~g~vG~~a~q~a~~~G~~vi~~ 174 (324)
T cd08291 126 FVNPLTALGMLETAR--EEGAKAVVHTAAASALGRMLVRLCKADGIKVINI 174 (324)
T ss_pred cccHHHHHHHHHhhc--cCCCcEEEEccCccHHHHHHHHHHHHcCCEEEEE
Confidence 333333344444333 367788887 788889999998888899987654
No 447
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=42.23 E-value=29 Score=32.57 Aligned_cols=35 Identities=23% Similarity=0.200 Sum_probs=30.3
Q ss_pred CCCeEEEecCCCcccHHHHHHhhhCCCEEEEecCCC
Q psy7981 169 AGTNAVVLGRSKIVGTPAAELLKWKHATVTVCHSKT 204 (216)
Q Consensus 169 ~Gk~vvViGrS~~VG~Pla~lL~~~~ATVtichs~T 204 (216)
.+++++|||-+ .+|-=+|..|.+.|..||+++...
T Consensus 171 ~~~~vvVIGgG-~ig~E~A~~l~~~G~~Vtlv~~~~ 205 (466)
T PRK07818 171 LPKSIVIAGAG-AIGMEFAYVLKNYGVDVTIVEFLD 205 (466)
T ss_pred CCCeEEEECCc-HHHHHHHHHHHHcCCeEEEEecCC
Confidence 47899999976 569999999999999999998653
No 448
>TIGR00289 conserved hypothetical protein TIGR00289. Homologous proteins related to MJ0570 of Methanococcus jannaschii include both the apparent orthologs found by this model above the trusted cutoff, the much longer protein YLR143W from Saccharomyces cerevisiae, and second homologous proteins from Archaeoglobus fulgidus and Pyrococcus horikoshii that appear to represent a second orthologous group.
Probab=42.08 E-value=1e+02 Score=26.69 Aligned_cols=80 Identities=16% Similarity=0.125 Sum_probs=52.8
Q ss_pred CCceEEEEEeCCCcchHHHH----HHHHHHHHHcCcceEEEeCCCCCCHHHHHHHHHHhcCCCCccE-------------
Q psy7981 40 FEPGLAIVQVGGREDSNVYI----RMKMKAAKEIGIDAQHVKLPRSITEIELLSRLKKLNEDPSVHG------------- 102 (216)
Q Consensus 40 ~~P~LaiI~vg~~~as~~Yv----~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~G------------- 102 (216)
..|...+..+.++.+|..|- +.....|+.+||....+..+.. .++++.+..+.| .+..|+|
T Consensus 24 ~~V~~L~~~~~~~~~s~~~h~~~~~~~~~qA~algiPl~~~~~~~~-~e~~~~~l~~~l-~~~gv~~vv~GdI~s~~qr~ 101 (222)
T TIGR00289 24 HEVISLVGVFSENEESYMFHSPNLHLTDLVAEAVGIPLIKLYTSGE-EEKEVEDLAGQL-GELDVEALCIGAIESNYQKS 101 (222)
T ss_pred CeeEEEEEEcCCCCCccccccCCHHHHHHHHHHcCCCeEEEEcCCc-hhHHHHHHHHHH-HHcCCCEEEECccccHHHHH
Confidence 35677777777776665552 6678899999999887777653 456666666655 3334554
Q ss_pred ----------EEEeCCCCCCCCCCHHHHhhhc
Q psy7981 103 ----------IIVQMPLDSDNDINAMLVTDSV 124 (216)
Q Consensus 103 ----------IlvqlPL~~P~~id~~~i~~~I 124 (216)
+-...|| =+.|++.+.+.|
T Consensus 102 ~~e~vc~~~gl~~~~PL---W~~d~~~l~e~i 130 (222)
T TIGR00289 102 RIDKVCRELGLKSIAPL---WHADPEKLMYEV 130 (222)
T ss_pred HHHHHHHHcCCEEeccc---cCCCHHHHHHHH
Confidence 4466787 356666666665
No 449
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=42.02 E-value=26 Score=32.29 Aligned_cols=42 Identities=17% Similarity=0.308 Sum_probs=33.8
Q ss_pred CCCCCeEEEecCCCcccHHHHHHhhhCCC-EEEEecCCCCChHH
Q psy7981 167 TIAGTNAVVLGRSKIVGTPAAELLKWKHA-TVTVCHSKTKNIQD 209 (216)
Q Consensus 167 ~l~Gk~vvViGrS~~VG~Pla~lL~~~~A-TVtichs~T~~l~~ 209 (216)
.+++++|+|+|-+. +|.+++..|...|. ++++++..+-.+..
T Consensus 132 ~l~~~~VlvvG~GG-~Gs~ia~~La~~Gvg~i~lvD~d~v~~sN 174 (376)
T PRK08762 132 RLLEARVLLIGAGG-LGSPAALYLAAAGVGTLGIVDHDVVDRSN 174 (376)
T ss_pred HHhcCcEEEECCCH-HHHHHHHHHHHcCCCeEEEEeCCEecchh
Confidence 46899999999987 59999999999987 68888876443333
No 450
>cd00229 SGNH_hydrolase SGNH_hydrolase, or GDSL_hydrolase, is a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the typical Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=42.01 E-value=1.4e+02 Score=22.05 Aligned_cols=97 Identities=12% Similarity=0.125 Sum_probs=54.5
Q ss_pred CCCceEEEEEeCCCcch-------HHHHHHHHHHHHH-----cCcceEEEeCCCCCC--------HHHHHHHHHHhcCCC
Q psy7981 39 DFEPGLAIVQVGGREDS-------NVYIRMKMKAAKE-----IGIDAQHVKLPRSIT--------EIELLSRLKKLNEDP 98 (216)
Q Consensus 39 ~~~P~LaiI~vg~~~as-------~~Yv~~k~k~a~~-----~Gi~~~~~~l~~~~~--------~~el~~~I~~lN~D~ 98 (216)
...|.++++.+|.|... ..|...-.+..+. -+.++.....|.... ...+.+.++++.+.-
T Consensus 63 ~~~~d~vil~~G~ND~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (187)
T cd00229 63 KDKPDLVIIELGTNDLGRGGDTSIDEFKANLEELLDALRERAPGAKVILITPPPPPPREGLLGRALPRYNEAIKAVAAEN 142 (187)
T ss_pred cCCCCEEEEEecccccccccccCHHHHHHHHHHHHHHHHHHCCCCcEEEEeCCCCCCCchhhHHHHHHHHHHHHHHHHHc
Confidence 57899999999998542 3344433333333 467777777765432 356667777776665
Q ss_pred CccEEEEeCCCCCCCCCCHHHHhhh-cCCCCCcccCCccchhHhhc
Q psy7981 99 SVHGIIVQMPLDSDNDINAMLVTDS-VSPEKDVDGLNTINEGRVAI 143 (216)
Q Consensus 99 ~V~GIlvqlPL~~P~~id~~~i~~~-I~p~KDVDG~~~~n~G~l~~ 143 (216)
.....+...++ ...... ....=..||+||...|.-..
T Consensus 143 ~~~~~~~~~d~--------~~~~~~~~~~~~~~Dg~H~~~~G~~~~ 180 (187)
T cd00229 143 PAPSGVDLVDL--------AALLGDEDKSLYSPDGIHPNPAGHKLI 180 (187)
T ss_pred CCCcceEEEEh--------hhhhCCCccccccCCCCCCchhhHHHH
Confidence 53212222222 111111 12333569999987776443
No 451
>PF08937 DUF1863: MTH538 TIR-like domain (DUF1863); InterPro: IPR015032 This protein adopts the flavodoxin fold, that is, five parallel beta-strands and four helical segments. The structure is a three-layer sandwich with alpha-1 and alpha-4 on one side of the beta-sheet, and alpha-2 and alpha-3 on the other side. Probable role in signal transduction as a phosphorylation-independent conformational switch protein []. This domain is similar to the TIR domain [].; PDB: 3HYN_A.
Probab=41.99 E-value=69 Score=24.68 Aligned_cols=54 Identities=22% Similarity=0.350 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcchHHHHHHHHHHHHHcCcceEEEeCCCCCC
Q psy7981 21 DIREGLKERVKKLKERLPDFEPGLAIVQVGGREDSNVYIRMKMKAAKEIGIDAQHVKLPRSIT 83 (216)
Q Consensus 21 ~i~~~ik~~v~~l~~~~~~~~P~LaiI~vg~~~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~ 83 (216)
.|++.|++++.. -...||++|.+.....||+.-...|.+.|.....+.++....
T Consensus 59 ~ik~~I~~~i~~---------s~~~IVLig~~T~~s~wV~~EI~~A~~~~~~Ii~V~~~~~~~ 112 (130)
T PF08937_consen 59 YIKRKIRERIKN---------SSVTIVLIGPNTAKSKWVNWEIEYALKKGKPIIGVYLPGLKD 112 (130)
T ss_dssp THHHHHHHHHHT---------EEEEEEE--TT----HHHHHHHHHHTTT---EEEEETT--SG
T ss_pred HHHHHHHHHHhc---------CCEEEEEeCCCcccCcHHHHHHHHHHHCCCCEEEEECCCCCC
Confidence 456666555531 368999999999999999999999999999999998887643
No 452
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=41.48 E-value=34 Score=34.41 Aligned_cols=35 Identities=26% Similarity=0.240 Sum_probs=31.0
Q ss_pred CCCCeEEEecCCCcccHHHHHHhhhCCCEEEEecCC
Q psy7981 168 IAGTNAVVLGRSKIVGTPAAELLKWKHATVTVCHSK 203 (216)
Q Consensus 168 l~Gk~vvViGrS~~VG~Pla~lL~~~~ATVtichs~ 203 (216)
-.||+|+|||-+.- |.-.|..|.++|..||++...
T Consensus 429 ~~~~~V~IIGaGpA-Gl~aA~~l~~~G~~V~v~e~~ 463 (752)
T PRK12778 429 KNGKKVAVIGSGPA-GLSFAGDLAKRGYDVTVFEAL 463 (752)
T ss_pred CCCCEEEEECcCHH-HHHHHHHHHHCCCeEEEEecC
Confidence 46999999998765 999999999999999999753
No 453
>cd06339 PBP1_YraM_LppC_lipoprotein_like Periplasmic binding component of lipoprotein LppC, an immunodominant antigen. This subgroup includes periplasmic binding component of lipoprotein LppC, an immunodominant antigen, whose molecular function is not characterized. Members of this subgroup are predicted to be involved in transport of lipid compounds, and they are sequence similar to the family of ABC-type hydrophobic amino acid transporters (HAAT).
Probab=41.40 E-value=2.5e+02 Score=24.78 Aligned_cols=138 Identities=15% Similarity=0.096 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHc-CcceEEEeCCCCCCHHHHHHHHHHhcCCCCccEEEEeCCCCCCCCCCHHHHhhhcCCCCCcccCCcc
Q psy7981 58 YIRMKMKAAKEI-GIDAQHVKLPRSITEIELLSRLKKLNEDPSVHGIIVQMPLDSDNDINAMLVTDSVSPEKDVDGLNTI 136 (216)
Q Consensus 58 Yv~~k~k~a~~~-Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvqlPL~~P~~id~~~i~~~I~p~KDVDG~~~~ 136 (216)
+.+.-+-+.+++ |-++++...+... .++-.+..++|..+ +|++|+= |+. .........+.-..+|.=+.+.
T Consensus 19 ~~~g~~lA~~~inG~~i~l~~~D~~~-~~~a~~~~~~li~~-~V~~iiG--~~~----s~~~~a~~~~~~~~~ip~i~~~ 90 (336)
T cd06339 19 IRNGFLAALYDLNGASIELRVYDTAG-AAGAAAAARQAVAE-GADIIVG--PLL----KENVAALAAAAAELGVPVLALN 90 (336)
T ss_pred HHHHHHHHHHhccCCCceEEEEeCCC-cccHHHHHHHHHHc-CCCEEEc--cCC----HHHHHHHHhhhccCCCCEEEcc
Confidence 355555555553 4444444444444 56666777778765 7886653 431 1111111112222333333321
Q ss_pred chhHhhcCCCC-CcccCCHHHHHHHHHHhCCCCCCCeEEEecCCCcccHHHHHHh----hhCCCEEEEecCCC
Q psy7981 137 NEGRVAIGDMN-GFIPCTPNGVLELIKRTNVTIAGTNAVVLGRSKIVGTPAAELL----KWKHATVTVCHSKT 204 (216)
Q Consensus 137 n~G~l~~~~~~-~~~PcTa~av~~lL~~~~i~l~Gk~vvViGrS~~VG~Pla~lL----~~~~ATVtichs~T 204 (216)
+...+..+. . ..+.+++......+-.|-.+...|++.|++-...-|+-++.-+ ...|.+|+..-+++
T Consensus 91 ~~~~~~~~~-~~f~~~~~~~~~~~~~~~~~~~~g~k~vaii~~~~~~g~~~~~~f~~~~~~~G~~vv~~~~~~ 162 (336)
T cd06339 91 NDESVAAGP-NLFYFGLSPEDEARRAAEYARSQGKRRPLVLAPDGAYGQRVADAFRQAWQQLGGTVVAIESYD 162 (336)
T ss_pred CCccccCCC-CEEEecCChHHHHHHHHHHHHhcCccceEEEecCChHHHHHHHHHHHHHHHcCCceeeeEecC
Confidence 111111111 1 1223333333332222222334589999987777787776654 34577776544444
No 454
>cd07018 S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 67K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily contain an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown that members in this subfamily, mostly bacterial, are serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys
Probab=41.29 E-value=33 Score=29.12 Aligned_cols=31 Identities=26% Similarity=0.452 Sum_probs=27.0
Q ss_pred CCCCCHHHHHHHHHHhcCCCCccEEEEeCCC
Q psy7981 79 PRSITEIELLSRLKKLNEDPSVHGIIVQMPL 109 (216)
Q Consensus 79 ~~~~~~~el~~~I~~lN~D~~V~GIlvqlPL 109 (216)
+...+-+++.+.|+++.+|++|.||++...=
T Consensus 26 ~~~~~~~~l~~~l~~a~~d~~ik~vvL~~~s 56 (222)
T cd07018 26 SSELSLRDLLEALEKAAEDDRIKGIVLDLDG 56 (222)
T ss_pred cCCccHHHHHHHHHHHhcCCCeEEEEEECCC
Confidence 3456789999999999999999999999754
No 455
>PRK07846 mycothione reductase; Reviewed
Probab=41.28 E-value=46 Score=31.27 Aligned_cols=36 Identities=17% Similarity=0.233 Sum_probs=31.2
Q ss_pred CCCeEEEecCCCcccHHHHHHhhhCCCEEEEecCCCC
Q psy7981 169 AGTNAVVLGRSKIVGTPAAELLKWKHATVTVCHSKTK 205 (216)
Q Consensus 169 ~Gk~vvViGrS~~VG~Pla~lL~~~~ATVtichs~T~ 205 (216)
.+++++|||-+ .+|-=+|..|.+.|..||+++....
T Consensus 165 ~~~~vvIIGgG-~iG~E~A~~l~~~G~~Vtli~~~~~ 200 (451)
T PRK07846 165 LPESLVIVGGG-FIAAEFAHVFSALGVRVTVVNRSGR 200 (451)
T ss_pred cCCeEEEECCC-HHHHHHHHHHHHcCCeEEEEEcCCc
Confidence 47999999977 5699999999999999999987653
No 456
>cd06308 PBP1_sensor_kinase_like Periplasmic binding domain of two-component sensor kinase signaling systems. Periplasmic binding domain of two-component sensor kinase signaling systems, some of which are fused with a C-terminal histidine kinase A domain (HisK) and/or a signal receiver domain (REC). Members of this group share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily and are predicted to be involved in sensing of environmental stimuli; their substrate specificities, however, are not known in detail.
Probab=41.27 E-value=1.8e+02 Score=24.18 Aligned_cols=54 Identities=6% Similarity=0.019 Sum_probs=34.7
Q ss_pred CcchHHHHHHHHHHHHHc-CcceEEEeCCCCCCHHHHHHHHHHhcCCCCccEEEEeCC
Q psy7981 52 REDSNVYIRMKMKAAKEI-GIDAQHVKLPRSITEIELLSRLKKLNEDPSVHGIIVQMP 108 (216)
Q Consensus 52 ~~as~~Yv~~k~k~a~~~-Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvqlP 108 (216)
++-....++...+.|++. |+.+....... +.++-.+.++.+-. ..++||++.-+
T Consensus 11 ~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~--~~~~~~~~i~~~~~-~~vdgiii~~~ 65 (270)
T cd06308 11 DPWRAAMNDEIQREASNYPDVELIIADAAD--DNSKQVADIENFIR-QGVDLLIISPN 65 (270)
T ss_pred CHHHHHHHHHHHHHHHhcCCcEEEEEcCCC--CHHHHHHHHHHHHH-hCCCEEEEecC
Confidence 344556677888889986 88887665432 33444556665543 36899999733
No 457
>cd08268 MDR2 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=41.20 E-value=62 Score=27.39 Aligned_cols=34 Identities=24% Similarity=0.255 Sum_probs=30.4
Q ss_pred CCCCeEEEecCCCcccHHHHHHhhhCCCEEEEec
Q psy7981 168 IAGTNAVVLGRSKIVGTPAAELLKWKHATVTVCH 201 (216)
Q Consensus 168 l~Gk~vvViGrS~~VG~Pla~lL~~~~ATVtich 201 (216)
..|+.++|.|.+.-+|.-+..++..+|+.|....
T Consensus 143 ~~~~~vli~g~~~~~g~~~~~~~~~~g~~v~~~~ 176 (328)
T cd08268 143 RPGDSVLITAASSSVGLAAIQIANAAGATVIATT 176 (328)
T ss_pred CCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEc
Confidence 4688999999999999999999999999987764
No 458
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=41.18 E-value=26 Score=30.43 Aligned_cols=43 Identities=14% Similarity=0.315 Sum_probs=33.4
Q ss_pred CCCCCeEEEecCCCcccHHHHHHhhhCCC-EEEEecCCCCChHHH
Q psy7981 167 TIAGTNAVVLGRSKIVGTPAAELLKWKHA-TVTVCHSKTKNIQDV 210 (216)
Q Consensus 167 ~l~Gk~vvViGrS~~VG~Pla~lL~~~~A-TVtichs~T~~l~~~ 210 (216)
.|++++|+|+|-+.+ |.+++..|...|. .+|+++...-.....
T Consensus 21 ~L~~~~VlvvG~Ggl-Gs~va~~La~~Gvg~i~lvD~D~ve~sNL 64 (240)
T TIGR02355 21 ALKASRVLIVGLGGL-GCAASQYLAAAGVGNLTLLDFDTVSLSNL 64 (240)
T ss_pred HHhCCcEEEECcCHH-HHHHHHHHHHcCCCEEEEEeCCcccccCc
Confidence 467899999999976 9999999998864 578877666544433
No 459
>COG2160 AraA L-arabinose isomerase [Carbohydrate transport and metabolism]
Probab=41.07 E-value=56 Score=31.32 Aligned_cols=79 Identities=19% Similarity=0.181 Sum_probs=52.4
Q ss_pred HHHcCcceEEEeCCCCCCHHHHHHHHHHhcCCCCccEEEEeCCCCCCCCCCHHHH-------------hhhcCCCCCccc
Q psy7981 66 AKEIGIDAQHVKLPRSITEIELLSRLKKLNEDPSVHGIIVQMPLDSDNDINAMLV-------------TDSVSPEKDVDG 132 (216)
Q Consensus 66 a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvqlPL~~P~~id~~~i-------------~~~I~p~KDVDG 132 (216)
.++....++....|=-+|.+++-+..++.|.|+.+-|+|+-+--|+|...-...+ .++--|-+++|
T Consensus 39 n~~~~~P~kiv~k~l~tS~d~i~~~~~~an~~d~cag~ItwmHtfSpakmwi~g~~~~~kPllhlhtQ~n~~Ipw~tiD- 117 (497)
T COG2160 39 NEEAKLPYKIVLKPLITSPDEITAICREANYDDRCAGVITWLHTFSPAKMWINGLRILNKPLLHLHTQFNAAIPWDSID- 117 (497)
T ss_pred hhhcCCCeEEEeccccCCHHHHHHHHHHhccCccceeEEEEEEecChHHHhhcccccccCceEEeeccccccCCccccc-
Confidence 3444555677777777899999999999999999999999887776643211110 12223555555
Q ss_pred CCccchhHhhcCC
Q psy7981 133 LNTINEGRVAIGD 145 (216)
Q Consensus 133 ~~~~n~G~l~~~~ 145 (216)
....|.-+...|+
T Consensus 118 md~MnlnqsAHGd 130 (497)
T COG2160 118 MDFMNLNQSAHGD 130 (497)
T ss_pred chhhcccccccCc
Confidence 5556666666664
No 460
>cd08264 Zn_ADH_like2 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the clo
Probab=40.92 E-value=71 Score=27.62 Aligned_cols=51 Identities=25% Similarity=0.294 Sum_probs=36.7
Q ss_pred ccCCHHHHHHHHHHhCCCCCCCeEEEecCCCcccHHHHHHhhhCCCEEEEec
Q psy7981 150 IPCTPNGVLELIKRTNVTIAGTNAVVLGRSKIVGTPAAELLKWKHATVTVCH 201 (216)
Q Consensus 150 ~PcTa~av~~lL~~~~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~ATVtich 201 (216)
+||.....+..+...++ -.|.+++|.|-+.-+|.-++.++..+|+.|+...
T Consensus 144 ~~~~~~~a~~~l~~~~~-~~g~~vlI~g~~g~vg~~~~~~a~~~G~~v~~~~ 194 (325)
T cd08264 144 LPVAALTAYHALKTAGL-GPGETVVVFGASGNTGIFAVQLAKMMGAEVIAVS 194 (325)
T ss_pred hhhhhHHHHHHHHhcCC-CCCCEEEEECCCchHHHHHHHHHHHcCCeEEEEe
Confidence 34333333333444333 3689999999999999999999999999988764
No 461
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=40.89 E-value=31 Score=32.87 Aligned_cols=34 Identities=32% Similarity=0.427 Sum_probs=29.9
Q ss_pred CCCeEEEecCCCcccHHHHHHhhhCCCEEEEecCC
Q psy7981 169 AGTNAVVLGRSKIVGTPAAELLKWKHATVTVCHSK 203 (216)
Q Consensus 169 ~Gk~vvViGrS~~VG~Pla~lL~~~~ATVtichs~ 203 (216)
.|++|+|||.+.. |.-.|..|.++|+.||+....
T Consensus 142 ~~~~V~IIGaG~a-Gl~aA~~L~~~g~~V~v~e~~ 175 (485)
T TIGR01317 142 TGKKVAVVGSGPA-GLAAADQLNRAGHTVTVFERE 175 (485)
T ss_pred CCCEEEEECCcHH-HHHHHHHHHHcCCeEEEEecC
Confidence 6899999999854 999999999999999999643
No 462
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=40.86 E-value=13 Score=24.83 Aligned_cols=60 Identities=13% Similarity=0.120 Sum_probs=35.8
Q ss_pred CCCCCHHHHhhhcCCCCCcccCCccchh-HhhcCCCCCccc-CCHHHHHHHHHHhC-CCCCCCeE
Q psy7981 112 DNDINAMLVTDSVSPEKDVDGLNTINEG-RVAIGDMNGFIP-CTPNGVLELIKRTN-VTIAGTNA 173 (216)
Q Consensus 112 P~~id~~~i~~~I~p~KDVDG~~~~n~G-~l~~~~~~~~~P-cTa~av~~lL~~~~-i~l~Gk~v 173 (216)
|...+++.|.+...+.-+|..+....-. ....| .+|+= +|+..+.+.++.++ ..+.|+++
T Consensus 7 p~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~--~a~v~f~~~~~a~~al~~~~~~~~~g~~l 69 (70)
T PF14259_consen 7 PPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRG--FAFVEFSSEEDAKRALELLNGKEIDGRKL 69 (70)
T ss_dssp TTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEE--EEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCCCHHHHHHHHHhcCCcceEEEEeeeccccCC--EEEEEeCCHHHHHHHHHHCCCcEECCEEc
Confidence 5666677777777666666555432110 01111 24553 69999999999987 88888765
No 463
>cd08267 MDR1 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=40.86 E-value=67 Score=27.24 Aligned_cols=45 Identities=29% Similarity=0.260 Sum_probs=35.1
Q ss_pred HHHHHHhCCCCCCCeEEEecCCCcccHHHHHHhhhCCCEEEEecC
Q psy7981 158 LELIKRTNVTIAGTNAVVLGRSKIVGTPAAELLKWKHATVTVCHS 202 (216)
Q Consensus 158 ~~lL~~~~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~ATVtichs 202 (216)
+..+...+---.|.+|+|.|-+..+|.-++.+....|+.|+.+.+
T Consensus 132 ~~~~~~~~~~~~g~~vli~g~~g~~g~~~~~la~~~g~~v~~~~~ 176 (319)
T cd08267 132 LQALRDAGKVKPGQRVLINGASGGVGTFAVQIAKALGAHVTGVCS 176 (319)
T ss_pred HHHHHHhcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCCEEEEEeC
Confidence 333444443347999999999899999999999999999988654
No 464
>PF11272 DUF3072: Protein of unknown function (DUF3072); InterPro: IPR021425 This bacterial family of proteins has no known function.
Probab=40.84 E-value=80 Score=21.82 Aligned_cols=41 Identities=20% Similarity=0.304 Sum_probs=28.6
Q ss_pred CCCcchHHHHHHHHHHHHHcCcceEEEeCCCCCCHHHHHHHHHHhc
Q psy7981 50 GGREDSNVYIRMKMKAAKEIGIDAQHVKLPRSITEIELLSRLKKLN 95 (216)
Q Consensus 50 g~~~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN 95 (216)
|+.|....=.......|++.| ..||++.|..+-.+.|..|-
T Consensus 12 GDePmT~aQ~syL~tL~e~Ag-----e~~~~~LtkaeAs~rId~L~ 52 (57)
T PF11272_consen 12 GDEPMTGAQASYLKTLSEEAG-----EPFPDDLTKAEASERIDELQ 52 (57)
T ss_pred CCCCCcHHHHHHHHHHHHHhC-----CCCCCcccHHHHHHHHHHHH
Confidence 566643332333466788888 67889999998888888774
No 465
>cd08244 MDR_enoyl_red Possible enoyl reductase. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr
Probab=40.67 E-value=81 Score=27.00 Aligned_cols=34 Identities=24% Similarity=0.178 Sum_probs=29.9
Q ss_pred CCCeEEEecCCCcccHHHHHHhhhCCCEEEEecC
Q psy7981 169 AGTNAVVLGRSKIVGTPAAELLKWKHATVTVCHS 202 (216)
Q Consensus 169 ~Gk~vvViGrS~~VG~Pla~lL~~~~ATVtichs 202 (216)
.|..++|.|-+..+|.-+..++..+|++|..+.+
T Consensus 142 ~~~~vlI~g~~~~~g~~~~~la~~~g~~v~~~~~ 175 (324)
T cd08244 142 PGDVVLVTAAAGGLGSLLVQLAKAAGATVVGAAG 175 (324)
T ss_pred CCCEEEEEcCCchHHHHHHHHHHHCCCEEEEEeC
Confidence 5889999999999999999999999999866643
No 466
>PRK09739 hypothetical protein; Provisional
Probab=40.62 E-value=1.6e+02 Score=24.32 Aligned_cols=64 Identities=22% Similarity=0.210 Sum_probs=38.6
Q ss_pred eEEEEEeCCCcchHHH--HHHHHHHHHHcCcceEEEeCCCC-------------------CCHHHHHHHHHHhcCCCCcc
Q psy7981 43 GLAIVQVGGREDSNVY--IRMKMKAAKEIGIDAQHVKLPRS-------------------ITEIELLSRLKKLNEDPSVH 101 (216)
Q Consensus 43 ~LaiI~vg~~~as~~Y--v~~k~k~a~~~Gi~~~~~~l~~~-------------------~~~~el~~~I~~lN~D~~V~ 101 (216)
++.+|....++.|.+. .+.-.+.+++.|.+++.+++.+. ...+++.+.++++. +-|
T Consensus 5 kiliI~~sp~~~s~s~~l~~~~~~~~~~~g~~v~~~dL~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~AD 81 (199)
T PRK09739 5 RIYLVWAHPRHDSLTAKVAEAIHQRAQERGHQVEELDLYRSGFDPVLTPEDEPDWKNPDKRYSPEVHQLYSELL---EHD 81 (199)
T ss_pred eEEEEEcCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEhhhhCCCCCCCHHHhhhhcccCCCCCHHHHHHHHHHH---hCC
Confidence 4666666666655333 45556666777777776665431 11245555666652 367
Q ss_pred EEEEeCCC
Q psy7981 102 GIIVQMPL 109 (216)
Q Consensus 102 GIlvqlPL 109 (216)
+|+++.|+
T Consensus 82 ~iV~~~P~ 89 (199)
T PRK09739 82 ALVFVFPL 89 (199)
T ss_pred EEEEECch
Confidence 89999997
No 467
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=40.57 E-value=40 Score=31.30 Aligned_cols=36 Identities=17% Similarity=0.182 Sum_probs=30.5
Q ss_pred CCCCeEEEecCCCcccHHHHHHhhhCCCEEEEecCCC
Q psy7981 168 IAGTNAVVLGRSKIVGTPAAELLKWKHATVTVCHSKT 204 (216)
Q Consensus 168 l~Gk~vvViGrS~~VG~Pla~lL~~~~ATVtichs~T 204 (216)
-.+++++|||.+ .+|--+|..|.+.+..||+++...
T Consensus 156 ~~~~~v~ViGgG-~~g~E~A~~l~~~g~~Vtli~~~~ 191 (441)
T PRK08010 156 ELPGHLGILGGG-YIGVEFASMFANFGSKVTILEAAS 191 (441)
T ss_pred ccCCeEEEECCC-HHHHHHHHHHHHCCCeEEEEecCC
Confidence 357899999977 569999999999999999998643
No 468
>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=40.44 E-value=1.5e+02 Score=24.72 Aligned_cols=63 Identities=17% Similarity=0.154 Sum_probs=39.4
Q ss_pred CCCceEEEEEeCCCcchHH----HHHHHHHHHHHcCcceEEEeCCCCC--CHHHHHHHHHHhcCCCCccE
Q psy7981 39 DFEPGLAIVQVGGREDSNV----YIRMKMKAAKEIGIDAQHVKLPRSI--TEIELLSRLKKLNEDPSVHG 102 (216)
Q Consensus 39 ~~~P~LaiI~vg~~~as~~----Yv~~k~k~a~~~Gi~~~~~~l~~~~--~~~el~~~I~~lN~D~~V~G 102 (216)
|..+...++..+.++.+.. =.+.-.+.|+.+||....+.++.+. -.+++.+.++++-+. .+++
T Consensus 23 G~~v~~l~~~~~~~~~~~~~h~~~~e~~~~~A~~lgipl~~i~~~~~~e~~~~~l~~~l~~~~~~-g~~~ 91 (194)
T cd01994 23 GHEVVALLNLTPEEGSSMMYHTVNHELLELQAEAMGIPLIRIEISGEEEDEVEDLKELLRKLKEE-GVDA 91 (194)
T ss_pred CCEEEEEEEEecCCCCcccccccCHHHHHHHHHHcCCcEEEEeCCCCchHHHHHHHHHHHHHHHc-CCCE
Confidence 5666666666665554421 2356678999999999988876532 224566667666543 4544
No 469
>COG1587 HemD Uroporphyrinogen-III synthase [Coenzyme metabolism]
Probab=40.39 E-value=1.5e+02 Score=25.44 Aligned_cols=117 Identities=18% Similarity=0.247 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCcceEEEeCCCCCCHHHHHHHHHHhcCC------------------------CCccEEEEeCCCCCCCCC
Q psy7981 60 RMKMKAAKEIGIDAQHVKLPRSITEIELLSRLKKLNED------------------------PSVHGIIVQMPLDSDNDI 115 (216)
Q Consensus 60 ~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D------------------------~~V~GIlvqlPL~~P~~i 115 (216)
....+.+++.|+....+ |++-+.++++..+..++.- -+|+=+-+..=. |.+.
T Consensus 87 ~~Ta~~l~~~G~~~~~~--p~~~~~~~l~~~l~~~~~~~~~vl~~~~~~~r~~l~~~L~~~G~~v~~~~~Y~~~--~~~~ 162 (248)
T COG1587 87 EKTAEALRKLGIKVDFI--PEDGDSEGLLEELPELLKGGKRVLILRGNGGREVLEEKLEERGAEVREVEVYRTE--PPPL 162 (248)
T ss_pred HHHHHHHHHhCCCCCcC--CCccchHHHHHHhhhhccCCCeEEEEcCCCchHHHHHHHHhCCCEEEEEeeeeec--CCCc
Q ss_pred CHHHHhhhcCCCCCcccCCccchhHhhcCCCCCcccCCHHHHHHHHHHhCCC-CCCCeEEEecCCCcccHHHHHHhhhCC
Q psy7981 116 NAMLVTDSVSPEKDVDGLNTINEGRVAIGDMNGFIPCTPNGVLELIKRTNVT-IAGTNAVVLGRSKIVGTPAAELLKWKH 194 (216)
Q Consensus 116 d~~~i~~~I~p~KDVDG~~~~n~G~l~~~~~~~~~PcTa~av~~lL~~~~i~-l~Gk~vvViGrS~~VG~Pla~lL~~~~ 194 (216)
++..+.+.+...+ +|.+...+ |-|+++.+.+++..+.+ +..+.++.| |...+..|.+.|
T Consensus 163 ~~~~~~~~~~~~~-~d~v~ftS-------------~~~v~~~~~~~~~~~~~~~~~~~v~~I------G~~Ta~~l~~~G 222 (248)
T COG1587 163 DEATLIELLKLGE-VDAVVFTS-------------SSAVRALLALAPESGIEFLERKRVASI------GPRTAETLKELG 222 (248)
T ss_pred cHHHHHHHHHhCC-CCEEEEeC-------------HHHHHHHHHHccccchhHhhCceEEEe------cHHHHHHHHHcC
Q ss_pred CEEEEe
Q psy7981 195 ATVTVC 200 (216)
Q Consensus 195 ATVtic 200 (216)
.++.++
T Consensus 223 ~~~~~~ 228 (248)
T COG1587 223 ITVDIA 228 (248)
T ss_pred Ccceec
No 470
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=40.32 E-value=64 Score=28.93 Aligned_cols=34 Identities=24% Similarity=0.170 Sum_probs=28.1
Q ss_pred CCCCeEEEecCCCcccHHHHHHhhhCCC-EEEEecC
Q psy7981 168 IAGTNAVVLGRSKIVGTPAAELLKWKHA-TVTVCHS 202 (216)
Q Consensus 168 l~Gk~vvViGrS~~VG~Pla~lL~~~~A-TVtichs 202 (216)
..|.+|+|.| +.-+|.-.+.+....|+ .|+.+.+
T Consensus 183 ~~g~~vlV~G-~g~vG~~~~~~a~~~G~~~Vi~~~~ 217 (365)
T cd08277 183 EPGSTVAVFG-LGAVGLSAIMGAKIAGASRIIGVDI 217 (365)
T ss_pred CCCCEEEEEC-CCHHHHHHHHHHHHcCCCeEEEEeC
Confidence 4699999999 47889999999999999 5776644
No 471
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=40.31 E-value=26 Score=25.79 Aligned_cols=31 Identities=29% Similarity=0.388 Sum_probs=24.5
Q ss_pred EEEecCCCcccHHHHHHhhhCCCEEEEecCCC
Q psy7981 173 AVVLGRSKIVGTPAAELLKWKHATVTVCHSKT 204 (216)
Q Consensus 173 vvViGrS~~VG~Pla~lL~~~~ATVtichs~T 204 (216)
|+|+|-+. +|+.++..|.+.+..|+++....
T Consensus 1 vvI~G~g~-~~~~i~~~L~~~~~~vvvid~d~ 31 (116)
T PF02254_consen 1 VVIIGYGR-IGREIAEQLKEGGIDVVVIDRDP 31 (116)
T ss_dssp EEEES-SH-HHHHHHHHHHHTTSEEEEEESSH
T ss_pred eEEEcCCH-HHHHHHHHHHhCCCEEEEEECCc
Confidence 57889875 69999999999777899887643
No 472
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=40.29 E-value=74 Score=27.92 Aligned_cols=24 Identities=33% Similarity=0.454 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHcCcceEEEeCCCC
Q psy7981 58 YIRMKMKAAKEIGIDAQHVKLPRS 81 (216)
Q Consensus 58 Yv~~k~k~a~~~Gi~~~~~~l~~~ 81 (216)
-...|..+|.++||.+..++=|..
T Consensus 207 g~~eKi~AA~~lgi~vivI~RP~~ 230 (249)
T PF02571_consen 207 GFDEKIEAARELGIPVIVIKRPPE 230 (249)
T ss_pred hhHHHHHHHHHcCCeEEEEeCCCC
Confidence 445566677777777666665543
No 473
>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty
Probab=40.29 E-value=74 Score=27.88 Aligned_cols=33 Identities=24% Similarity=0.140 Sum_probs=28.8
Q ss_pred CCCCeEEEecCCCcccHHHHHHhhhCCCEEEEec
Q psy7981 168 IAGTNAVVLGRSKIVGTPAAELLKWKHATVTVCH 201 (216)
Q Consensus 168 l~Gk~vvViGrS~~VG~Pla~lL~~~~ATVtich 201 (216)
-.|.+|+|.| ..-+|.-+..++..+|++|+..-
T Consensus 164 ~~~~~vlV~g-~g~vg~~~~~~a~~~G~~vi~~~ 196 (345)
T cd08260 164 KPGEWVAVHG-CGGVGLSAVMIASALGARVIAVD 196 (345)
T ss_pred CCCCEEEEEC-CCHHHHHHHHHHHHcCCeEEEEe
Confidence 4689999999 78999999999999999987763
No 474
>cd06375 PBP1_mGluR_groupII Ligand binding domain of the group II metabotropic glutamate receptor. Ligand binding domain of the group II metabotropic glutamate receptor, a family that contains mGlu2R and mGlu3R, all of which inhibit adenylyl cyclase. The metabotropic glutamate receptor is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into intracellular responses. The mGluRs are classified into three groups which comprise eight subtypes
Probab=40.24 E-value=1.5e+02 Score=27.88 Aligned_cols=65 Identities=18% Similarity=0.126 Sum_probs=46.7
Q ss_pred eEEEEEeCCCcchHHHHHHHHHHHHHcCcceEE-EeCCCCCCHHHHHHHHHHhcCCCCccEEEEeCC
Q psy7981 43 GLAIVQVGGREDSNVYIRMKMKAAKEIGIDAQH-VKLPRSITEIELLSRLKKLNEDPSVHGIIVQMP 108 (216)
Q Consensus 43 ~LaiI~vg~~~as~~Yv~~k~k~a~~~Gi~~~~-~~l~~~~~~~el~~~I~~lN~D~~V~GIlvqlP 108 (216)
+.++|...++ -...-++.-.+.+++.|+.... ..++.+.++.++...+.++.++++.+.|++...
T Consensus 176 ~Vaii~~~~~-yG~~~~~~~~~~~~~~gi~i~~~~~i~~~~~~~d~~~~l~~l~~~~~a~vVvl~~~ 241 (458)
T cd06375 176 YVSTVASEGD-YGETGIEAFEQEARLRNICIATSEKVGRSADRKSYDSVIRKLLQKPNARVVVLFTR 241 (458)
T ss_pred EEEEEEeCch-HHHHHHHHHHHHHHHCCeeEEEEEEecCCCCHHHHHHHHHHHhccCCCEEEEEecC
Confidence 5677665544 3455567777889999998754 446666667888899999876677888887644
No 475
>cd01829 SGNH_hydrolase_peri2 SGNH_peri2; putative periplasmic member of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=39.95 E-value=1.5e+02 Score=23.74 Aligned_cols=62 Identities=18% Similarity=0.218 Sum_probs=37.4
Q ss_pred CCceEEEEEeCCCcch-----------------HHHHHHHHHH---HHHcCcceEEEeCCCCCCH------HHHHHHHHH
Q psy7981 40 FEPGLAIVQVGGREDS-----------------NVYIRMKMKA---AKEIGIDAQHVKLPRSITE------IELLSRLKK 93 (216)
Q Consensus 40 ~~P~LaiI~vg~~~as-----------------~~Yv~~k~k~---a~~~Gi~~~~~~l~~~~~~------~el~~~I~~ 93 (216)
.+|.+++|.+|.|... ..|.++.... +++-|+.+..+..|.-... .++.+.+++
T Consensus 58 ~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~~~~~l~~lv~~~~~~~~~vili~~pp~~~~~~~~~~~~~~~~~~~ 137 (200)
T cd01829 58 EKPDVVVVFLGANDRQDIRDGDGYLKFGSPEWEEEYRQRIDELLNVARAKGVPVIWVGLPAMRSPKLSADMVYLNSLYRE 137 (200)
T ss_pred CCCCEEEEEecCCCCccccCCCceeecCChhHHHHHHHHHHHHHHHHHhCCCcEEEEcCCCCCChhHhHHHHHHHHHHHH
Confidence 5799999999998632 3565444433 4456888777766554321 245555555
Q ss_pred hcCCCCcc
Q psy7981 94 LNEDPSVH 101 (216)
Q Consensus 94 lN~D~~V~ 101 (216)
+-+..+++
T Consensus 138 ~a~~~~~~ 145 (200)
T cd01829 138 EVAKAGGE 145 (200)
T ss_pred HHHHcCCE
Confidence 55554443
No 476
>PF01963 TraB: TraB family; InterPro: IPR002816 In prokaryotes, for example Enterococcus faecalis (Streptococcus faecalis), the conjugative transfer of certain plasmids is controlled by peptide pheromones []. Plasmid free recipient cells secret plasmid specific oligopeptides, termed sex pheromones. They induce bacterial clumping and specifically activate the conjugative transfer of the corresponding plasmid. Once recipient cells acquire the plasmid they start to produce a pheromone inhibitor to block the activity of the pheromone and to prevent plasmid containing cells from clumping; they also become donor cells able to transfer the plasmid to plasmid free recipient cells. Examples of such plasmid-pheromone systems are bacteriocin plasmid pPD1 [], haemolysin/bacteriocin plasmid, pAD1 [], tetracycline-resistance plasmid, pCF10 [], and the haemolysin/bacteriocin plasmid, pOB1 []. TraB in combination with another factor contributes to pheromone shutdown in cells that have acquired a plasmid. It exact function has not yet been determined [, ]. This entry also contains plant and mammalian proteins, suggesting that these Trab-related proteins may have a somewhat wider or different function in eukaryotes.
Probab=39.76 E-value=51 Score=27.91 Aligned_cols=30 Identities=37% Similarity=0.439 Sum_probs=25.4
Q ss_pred CCeEEEecCCCcccHH-HHHHhhhCCCEEEE
Q psy7981 170 GTNAVVLGRSKIVGTP-AAELLKWKHATVTV 199 (216)
Q Consensus 170 Gk~vvViGrS~~VG~P-la~lL~~~~ATVti 199 (216)
|.-++|||.+-++|.- +-.+|.++|+||+-
T Consensus 228 ~~~fvvVGa~HL~G~~gvl~lLr~~Gy~V~~ 258 (259)
T PF01963_consen 228 GTVFVVVGAGHLPGEDGVLDLLRKKGYTVEP 258 (259)
T ss_pred CCEEEEEcchhccchhhHHHHHHhCCceeec
Confidence 5789999999999864 66788889999973
No 477
>cd00578 L-fuc_L-ara-isomerases L-fucose isomerase (FucIase) and L-arabinose isomerase (AI) family; composed of FucIase, AI and similar proteins. FucIase converts L-fucose, an aldohexose, to its ketose form, which prepares it for aldol cleavage (similar to the isomerization of glucose in glycolysis). L-fucose (or 6-deoxy-L-galactose) is found in various oligo- and polysaccharides in mammals, bacteria and plants. AI catalyzes the isomerization of L-arabinose to L-ribulose, the first reaction in its conversion to D-xylulose-5-phosphate, an intermediate in the pentose phosphate pathway, which allows L-arabinose to be used as a carbon source. AI can also convert D-galactose to D-tagatose at elevated temperatures in the presence of divalent metal ions. D-tagatose, rarely found in nature, is of commercial interest as a low-calorie sugar substitute.
Probab=39.69 E-value=84 Score=29.57 Aligned_cols=104 Identities=14% Similarity=0.214 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHH--HHHHHhcCCCCCceEEEEEeCCCcchHHHH-HHHHHHHHHcCcceEEEeCC------CCCCHHHH
Q psy7981 17 AVSGDIREGLKER--VKKLKERLPDFEPGLAIVQVGGREDSNVYI-RMKMKAAKEIGIDAQHVKLP------RSITEIEL 87 (216)
Q Consensus 17 ~vA~~i~~~ik~~--v~~l~~~~~~~~P~LaiI~vg~~~as~~Yv-~~k~k~a~~~Gi~~~~~~l~------~~~~~~el 87 (216)
.++++|.+.++.- +..|+ + +-+.++|+++..-... -.+...-+++|++++.+.+. +.++.+|+
T Consensus 140 ~~~~~i~~~~raa~~~~~lr----~----~rig~iG~~~~~~~~~~~d~~~~~~~fG~~v~~i~~~el~~~~~~v~~~ev 211 (452)
T cd00578 140 DVLRKIESWARAAAAVATLR----G----LRVGRFGDRMRGMAVTEGDKVLAQIKFGVSVEYLEVGELVRRIDEVSDEEV 211 (452)
T ss_pred HHHHHHHHHHHHHHHHHHhh----c----CceEEECCCcCCcEEecCCHHHHHHhhCeEEEEEcHHHHHHHHHhCCHHHH
Confidence 4666666655532 22332 2 3367788775432211 13456678899999988875 34577888
Q ss_pred HHHHHHhcCCCCccEEEEeCCCCCCCCCCHHHHhhh---------cCCCCCcccCCcc
Q psy7981 88 LSRLKKLNEDPSVHGIIVQMPLDSDNDINAMLVTDS---------VSPEKDVDGLNTI 136 (216)
Q Consensus 88 ~~~I~~lN~D~~V~GIlvqlPL~~P~~id~~~i~~~---------I~p~KDVDG~~~~ 136 (216)
.+.++.+-+.-.+. .. -..+.++.+... +--+++.|++...
T Consensus 212 ~~~~~~~~~~~~~~-----~~---~~~~~~e~l~~~ar~~~Al~~~~~~~~~~a~a~~ 261 (452)
T cd00578 212 EELLEEYEENYDVV-----LD---AKGLTDESLRKAARLYLALRRLLEDGGLDAFTIQ 261 (452)
T ss_pred HHHHHHHHhhccee-----cc---CCCCCHHHHHHHHHHHHHHHHHHHhCCCCEEEec
Confidence 88888776664332 11 112333333333 3447899998743
No 478
>cd06315 PBP1_ABC_sugar_binding_like_6 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=39.68 E-value=1.7e+02 Score=24.81 Aligned_cols=52 Identities=17% Similarity=0.036 Sum_probs=35.9
Q ss_pred CcchHHHHHHHHHHHHHcCcceEEEeCCCCCCHHHHHHHHHHhcCCCCccEEEEe
Q psy7981 52 REDSNVYIRMKMKAAKEIGIDAQHVKLPRSITEIELLSRLKKLNEDPSVHGIIVQ 106 (216)
Q Consensus 52 ~~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq 106 (216)
++-....++...+.|++.|..+....- +-++++..+.++.+.. .+|+||++.
T Consensus 12 ~~~~~~~~~gi~~~a~~~gy~~~~~~~--~~~~~~~~~~i~~l~~-~~vdgiil~ 63 (280)
T cd06315 12 NGGILGVGEGVREAAKAIGWNLRILDG--RGSEAGQAAALNQAIA-LKPDGIVLG 63 (280)
T ss_pred CcHHHHHHHHHHHHHHHcCcEEEEECC--CCCHHHHHHHHHHHHH-cCCCEEEEc
Confidence 455566678888999999987766533 2344555566666654 469999996
No 479
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=39.66 E-value=2.3e+02 Score=23.81 Aligned_cols=63 Identities=14% Similarity=0.140 Sum_probs=44.4
Q ss_pred ceEEEEEeCCC-cchHHHHHHHHHHHHHcCcceEEEeCCCCC-CHHHHHHHHHHhcCCCCccEEEE
Q psy7981 42 PGLAIVQVGGR-EDSNVYIRMKMKAAKEIGIDAQHVKLPRSI-TEIELLSRLKKLNEDPSVHGIIV 105 (216)
Q Consensus 42 P~LaiI~vg~~-~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~-~~~el~~~I~~lN~D~~V~GIlv 105 (216)
.++. |.+|++ .....-+....+.+++-||.+..+-|-+.. ..+.|...++..|.+++-|=|-+
T Consensus 108 ~riv-i~v~S~~~~d~~~i~~~~~~lkk~~I~v~vI~~G~~~~~~~~l~~~~~~~~~~~~s~~~~~ 172 (187)
T cd01452 108 QRIV-AFVGSPIEEDEKDLVKLAKRLKKNNVSVDIINFGEIDDNTEKLTAFIDAVNGKDGSHLVSV 172 (187)
T ss_pred ceEE-EEEecCCcCCHHHHHHHHHHHHHcCCeEEEEEeCCCCCCHHHHHHHHHHhcCCCCceEEEe
Confidence 3544 444443 555555667888999999999999998654 55677778899998777664433
No 480
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=39.44 E-value=49 Score=32.29 Aligned_cols=50 Identities=14% Similarity=0.233 Sum_probs=37.5
Q ss_pred HHHHHHHHHhCC----------CCCCCeEEEecCCCcccHHHHHHhhhCCCEEEEecCCCC
Q psy7981 155 NGVLELIKRTNV----------TIAGTNAVVLGRSKIVGTPAAELLKWKHATVTVCHSKTK 205 (216)
Q Consensus 155 ~av~~lL~~~~i----------~l~Gk~vvViGrS~~VG~Pla~lL~~~~ATVtichs~T~ 205 (216)
+|+++-..+++- ...+.+|+|+|.+ .+|.-.+..+...||.|+++.....
T Consensus 139 ~Avi~Aa~~lgr~~~g~~taag~vp~akVlViGaG-~iGl~Aa~~ak~lGA~V~v~d~~~~ 198 (511)
T TIGR00561 139 RAIIEAAHEFGRFFTGQITAAGKVPPAKVLVIGAG-VAGLAAIGAANSLGAIVRAFDTRPE 198 (511)
T ss_pred HHHHHHHHHhhhhcCCceecCCCCCCCEEEEECCC-HHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 456666666543 2356899999975 4599999999999999999876544
No 481
>PF03618 Kinase-PPPase: Kinase/pyrophosphorylase; InterPro: IPR005177 This entry represents a family of uncharacterised proteins which are predicted to function as phosphotransferases.; GO: 0005524 ATP binding, 0016772 transferase activity, transferring phosphorus-containing groups
Probab=39.42 E-value=98 Score=27.52 Aligned_cols=121 Identities=18% Similarity=0.205 Sum_probs=70.1
Q ss_pred cCcceEEEeCCCCCCHHHHHHHHHHhcCCCCccEEEEeCCCCCCCCCCHHHHhhhcCCCCCcccCCccchhHhh------
Q psy7981 69 IGIDAQHVKLPRSITEIELLSRLKKLNEDPSVHGIIVQMPLDSDNDINAMLVTDSVSPEKDVDGLNTINEGRVA------ 142 (216)
Q Consensus 69 ~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvqlPL~~P~~id~~~i~~~I~p~KDVDG~~~~n~G~l~------ 142 (216)
-|++++.+.+|--.+.+++.+.+++.++++ ||++..=. .-+.++.+..-.-+.+|..+.- +|.+.
T Consensus 24 ~~~~~~~~~~p~I~~~~~~~~il~~i~~~~---~iV~~Tlv----~~~lr~~l~~~~~~~~i~~~Dl--l~~~l~~l~~~ 94 (255)
T PF03618_consen 24 PDVEFEIHRFPFIRTEEQLDEILEEIKEEN---AIVFYTLV----DPELREYLEEFCREHGIPCVDL--LGPLLSALEEF 94 (255)
T ss_pred CCCceEEEECCCcCCHHHHHHHHHHHhccC---CEEEEeCC----CHHHHHHHHHHHHhcCCCEEec--cHHHHHHHHHH
Confidence 388999999998889999999999998843 45554333 1122333333333444333332 11111
Q ss_pred cCCCCCcccCCHHH-------HHHHHHH---h--CC---CCCCCeEEEecCCCcccHHHHHHhhhCCCEEE
Q psy7981 143 IGDMNGFIPCTPNG-------VLELIKR---T--NV---TIAGTNAVVLGRSKIVGTPAAELLKWKHATVT 198 (216)
Q Consensus 143 ~~~~~~~~PcTa~a-------v~~lL~~---~--~i---~l~Gk~vvViGrS~~VG~Pla~lL~~~~ATVt 198 (216)
.|..+...|--... =++-+++ | |. .+.-..+++||=|..==.|+++.|.++|..|.
T Consensus 95 lg~~p~~~pg~~~~ld~~Yf~RIeAiefav~~DDG~~~~~l~~ADivLvGVSRtsKTPlS~YLA~~G~KvA 165 (255)
T PF03618_consen 95 LGQKPSRKPGLQHQLDEDYFKRIEAIEFAVKHDDGKNPRGLDEADIVLVGVSRTSKTPLSMYLANKGYKVA 165 (255)
T ss_pred HCcCcccccCccccchHHHHHHHHHHHHHHHccCCCCccccccCCEEEEcccccCCCchhHHHHhcCccee
Confidence 12100111111110 1122222 1 22 46788999999999988899999999987764
No 482
>cd08252 AL_MDR Arginate lyase and other MDR family members. This group contains a structure identified as an arginate lyase. Other members are identified quinone reductases, alginate lyases, and other proteins related to the zinc-dependent dehydrogenases/reductases. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, whil
Probab=39.41 E-value=88 Score=27.05 Aligned_cols=34 Identities=29% Similarity=0.351 Sum_probs=30.7
Q ss_pred CCeEEEecCCCcccHHHHHHhhhCC-CEEEEecCC
Q psy7981 170 GTNAVVLGRSKIVGTPAAELLKWKH-ATVTVCHSK 203 (216)
Q Consensus 170 Gk~vvViGrS~~VG~Pla~lL~~~~-ATVtichs~ 203 (216)
|..|+|.|-+..+|.-+..+....| +.|..+.+.
T Consensus 150 g~~vlV~g~~g~vg~~~~~~a~~~G~~~v~~~~~~ 184 (336)
T cd08252 150 GKTLLIIGGAGGVGSIAIQLAKQLTGLTVIATASR 184 (336)
T ss_pred CCEEEEEcCCchHHHHHHHHHHHcCCcEEEEEcCC
Confidence 8999999999999999999999999 998887554
No 483
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=39.32 E-value=27 Score=31.07 Aligned_cols=42 Identities=21% Similarity=0.277 Sum_probs=34.7
Q ss_pred CCCCCeEEEecCCCcccHHHHHHhhhCC-CEEEEecCCCCChHH
Q psy7981 167 TIAGTNAVVLGRSKIVGTPAAELLKWKH-ATVTVCHSKTKNIQD 209 (216)
Q Consensus 167 ~l~Gk~vvViGrS~~VG~Pla~lL~~~~-ATVtichs~T~~l~~ 209 (216)
.|++++|+|+|-+.+ |--++..|...| -.+|+++..+-....
T Consensus 27 kL~~s~VlVvG~GGV-Gs~vae~Lar~GVg~itLiD~D~V~~sN 69 (268)
T PRK15116 27 LFADAHICVVGIGGV-GSWAAEALARTGIGAITLIDMDDVCVTN 69 (268)
T ss_pred HhcCCCEEEECcCHH-HHHHHHHHHHcCCCEEEEEeCCEecccc
Confidence 478999999998864 999999999998 789999877654443
No 484
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=39.29 E-value=58 Score=29.28 Aligned_cols=32 Identities=25% Similarity=0.139 Sum_probs=26.5
Q ss_pred CCCeEEEecCCCcccHHHHHHhhhCCC-EEEEec
Q psy7981 169 AGTNAVVLGRSKIVGTPAAELLKWKHA-TVTVCH 201 (216)
Q Consensus 169 ~Gk~vvViGrS~~VG~Pla~lL~~~~A-TVtich 201 (216)
.|.+|+|.|- .-||.-.+.++..+|+ .|++..
T Consensus 191 ~g~~VlV~G~-G~vG~~a~~lak~~G~~~Vi~~~ 223 (371)
T cd08281 191 PGQSVAVVGL-GGVGLSALLGAVAAGASQVVAVD 223 (371)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCcEEEEc
Confidence 6899999995 6889988888888999 576654
No 485
>TIGR03679 arCOG00187 arCOG00187 universal archaeal metal-binding-domain/4Fe-4S-binding-domain containing ABC transporter, ATP-binding protein. This model has the same scope as an archaeal COG (arCOG00187) and is found in all completely sequenced archaea and does not recognize any known non-archaeal genes.
Probab=39.20 E-value=1e+02 Score=26.26 Aligned_cols=66 Identities=24% Similarity=0.310 Sum_probs=40.7
Q ss_pred CCCceEEEEEeCCCcchHH----HHHHHHHHHHHcCcceEEEeCCC--CCCHHHHHHHHHHhcCCCCccEEEE
Q psy7981 39 DFEPGLAIVQVGGREDSNV----YIRMKMKAAKEIGIDAQHVKLPR--SITEIELLSRLKKLNEDPSVHGIIV 105 (216)
Q Consensus 39 ~~~P~LaiI~vg~~~as~~----Yv~~k~k~a~~~Gi~~~~~~l~~--~~~~~el~~~I~~lN~D~~V~GIlv 105 (216)
|..+..++...+.+..|-. -.+.-.+.|+.+||....+.++. +...+++...+.++-+. .+++|..
T Consensus 21 G~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~lgip~~~i~~~~~~~~~~~~l~~~l~~~~~~-g~~~vv~ 92 (218)
T TIGR03679 21 GHEVRCLITVVPENEESYMFHTPNIELTRLQAEALGIPLVKIETSGEKEKEVEDLKGALKELKRE-GVEGIVT 92 (218)
T ss_pred CCEEEEEEEeccCCCCccccCCCCHHHHHHHHHHhCCCEEEEECCCCChHHHHHHHHHHHHHHHc-CCCEEEE
Confidence 6666555555565433322 23566789999999998888874 22334566777766444 5665543
No 486
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=39.15 E-value=1.6e+02 Score=22.29 Aligned_cols=35 Identities=14% Similarity=0.162 Sum_probs=27.8
Q ss_pred EEEeCCCcchHHHHHHHHHHHHHcCcceEEEeCCC
Q psy7981 46 IVQVGGREDSNVYIRMKMKAAKEIGIDAQHVKLPR 80 (216)
Q Consensus 46 iI~vg~~~as~~Yv~~k~k~a~~~Gi~~~~~~l~~ 80 (216)
++..|..-+|..-++..++.|++-|++++....+.
T Consensus 5 LlvCg~G~STSlla~k~k~~~~e~gi~~~i~a~~~ 39 (104)
T PRK09590 5 LIICAAGMSSSMMAKKTTEYLKEQGKDIEVDAITA 39 (104)
T ss_pred EEECCCchHHHHHHHHHHHHHHHCCCceEEEEecH
Confidence 45566666777888888999999999998877664
No 487
>PRK07877 hypothetical protein; Provisional
Probab=39.09 E-value=23 Score=35.98 Aligned_cols=40 Identities=20% Similarity=0.218 Sum_probs=33.8
Q ss_pred CCCCCeEEEecCCCcccHHHHHHhhhCC--CEEEEecCCCCChH
Q psy7981 167 TIAGTNAVVLGRSKIVGTPAAELLKWKH--ATVTVCHSKTKNIQ 208 (216)
Q Consensus 167 ~l~Gk~vvViGrS~~VG~Pla~lL~~~~--ATVtichs~T~~l~ 208 (216)
.|+.++|.|||-| ||-+++.+|...| -..++++--+-++.
T Consensus 104 ~L~~~~V~IvG~G--lGs~~a~~LaraGvvG~l~lvD~D~ve~s 145 (722)
T PRK07877 104 RLGRLRIGVVGLS--VGHAIAHTLAAEGLCGELRLADFDTLELS 145 (722)
T ss_pred HHhcCCEEEEEec--HHHHHHHHHHHccCCCeEEEEcCCEEccc
Confidence 4789999999997 7999999999998 48999987765443
No 488
>TIGR02803 ExbD_1 TonB system transport protein ExbD, group 1. Members of this family are Gram-negative bacterial inner membrane proteins, generally designated ExbD, related to the TolR family modeled by TIGRFAMs TIGR02801. Members always are encoded next to a protein designated ExbB (TIGR02797), related to the TolQ family modeled by TIGRFAMs TIGR02796. ExbD and ExbB together form a proton channel through which they can harness the proton-motive force to energize TonB, which in turn energizes TonB-dependent receptors in the outer membrane. TonB-dependent receptors with known specificity tend to import siderophores or vitamin B12. A TonB system and Tol-Pal system often will co-exist in a single bacterial genome.
Probab=38.91 E-value=73 Score=24.37 Aligned_cols=55 Identities=15% Similarity=0.103 Sum_probs=39.2
Q ss_pred hcccHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcchHHHHHHHHHHHHHcCcce
Q psy7981 12 ILSGTAVSGDIREGLKERVKKLKERLPDFEPGLAIVQVGGREDSNVYIRMKMKAAKEIGIDA 73 (216)
Q Consensus 12 il~Gk~vA~~i~~~ik~~v~~l~~~~~~~~P~LaiI~vg~~~as~~Yv~~k~k~a~~~Gi~~ 73 (216)
.++|+.+.. +++.++++.+.+ ..|...++..+|...+...+-.-...|++.|+.-
T Consensus 61 ~~~~~~v~~---~~L~~~l~~~~~----~~~~~~v~I~aD~~~~~~~vv~v~d~~~~aG~~~ 115 (122)
T TIGR02803 61 FVGNDPVAR---ETLGTALDALTE----GDKDTTIFFRADKTVDYGDLMKVMNLLRQAGYLK 115 (122)
T ss_pred EECCccCCH---HHHHHHHHHHHh----cCCCceEEEEcCCCCCHHHHHHHHHHHHHcCCCE
Confidence 356766543 445555555543 2356678888888899999999999999999963
No 489
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=38.70 E-value=34 Score=35.98 Aligned_cols=34 Identities=24% Similarity=0.121 Sum_probs=30.7
Q ss_pred CCCeEEEecCCCcccHHHHHHhhhCCCEEEEecCC
Q psy7981 169 AGTNAVVLGRSKIVGTPAAELLKWKHATVTVCHSK 203 (216)
Q Consensus 169 ~Gk~vvViGrS~~VG~Pla~lL~~~~ATVtichs~ 203 (216)
.||+|+|||.+.- |.-.|..|.++|..||+....
T Consensus 429 ~~~kVaIIG~GPA-GLsaA~~La~~G~~VtV~E~~ 462 (1006)
T PRK12775 429 KLGKVAICGSGPA-GLAAAADLVKYGVDVTVYEAL 462 (1006)
T ss_pred CCCEEEEECCCHH-HHHHHHHHHHcCCcEEEEecC
Confidence 5899999998876 999999999999999999764
No 490
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=38.69 E-value=92 Score=26.98 Aligned_cols=61 Identities=15% Similarity=0.187 Sum_probs=46.0
Q ss_pred cccCCHHHHHHHHHHhCCCCCCCeEEEecCCCcccHHHHHHhhhCCC-EEEEecCCCCChHHHHh
Q psy7981 149 FIPCTPNGVLELIKRTNVTIAGTNAVVLGRSKIVGTPAAELLKWKHA-TVTVCHSKTKNIQDVVK 212 (216)
Q Consensus 149 ~~PcTa~av~~lL~~~~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~A-TVtichs~T~~l~~~~k 212 (216)
|++=.+.-..+++++++++++|+.|+=+|.|. |. ++..|+++|| .|+-+......|.+.++
T Consensus 55 ~vsr~~~kL~~~l~~~~~~~~~~~vlDiG~gt--G~-~t~~l~~~ga~~v~avD~~~~~l~~~l~ 116 (228)
T TIGR00478 55 FVSRGGEKLKEALEEFNIDVKNKIVLDVGSST--GG-FTDCALQKGAKEVYGVDVGYNQLAEKLR 116 (228)
T ss_pred hhhhhHHHHHHHHHhcCCCCCCCEEEEcccCC--CH-HHHHHHHcCCCEEEEEeCCHHHHHHHHh
Confidence 55556677888899999999999999999987 33 5666767776 59988876655655443
No 491
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=38.64 E-value=69 Score=28.19 Aligned_cols=42 Identities=24% Similarity=0.260 Sum_probs=31.6
Q ss_pred HHHHhCCCCCCCeEEEecCCCcccHHHHHHhhhCCC-EEEEecC
Q psy7981 160 LIKRTNVTIAGTNAVVLGRSKIVGTPAAELLKWKHA-TVTVCHS 202 (216)
Q Consensus 160 lL~~~~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~A-TVtichs 202 (216)
.+......-.|.+|+|.| +..+|.-++.++...|+ +|++..+
T Consensus 166 ~~~~~~~~~~~~~vlI~g-~g~vg~~~~~~a~~~G~~~v~~~~~ 208 (350)
T cd08240 166 AVKKLMPLVADEPVVIIG-AGGLGLMALALLKALGPANIIVVDI 208 (350)
T ss_pred HHHhcccCCCCCEEEEEC-CcHHHHHHHHHHHHcCCCeEEEEeC
Confidence 334334333789999998 68899999999999999 6776654
No 492
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=38.54 E-value=33 Score=34.44 Aligned_cols=35 Identities=11% Similarity=0.115 Sum_probs=30.9
Q ss_pred CCCeEEEecCCCcccHHHHHHhhhCCCEEEEecCCC
Q psy7981 169 AGTNAVVLGRSKIVGTPAAELLKWKHATVTVCHSKT 204 (216)
Q Consensus 169 ~Gk~vvViGrS~~VG~Pla~lL~~~~ATVtichs~T 204 (216)
.+++|+|||-+ .+|--+|..|...|..||+++...
T Consensus 311 lpk~VvIVGgG-~iGvE~A~~l~~~G~eVTLIe~~~ 345 (659)
T PTZ00153 311 LQNYMGIVGMG-IIGLEFMDIYTALGSEVVSFEYSP 345 (659)
T ss_pred cCCceEEECCC-HHHHHHHHHHHhCCCeEEEEeccC
Confidence 47899999988 479999999999999999999753
No 493
>cd07019 S49_SppA_1 Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppAs in this subfamily are found in all three domains of life and are involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-te
Probab=38.39 E-value=38 Score=28.55 Aligned_cols=35 Identities=14% Similarity=0.282 Sum_probs=27.7
Q ss_pred CCCHHHHHHHHHHhcCCCCccEEEEeCCCCCCCCCCHH
Q psy7981 81 SITEIELLSRLKKLNEDPSVHGIIVQMPLDSDNDINAM 118 (216)
Q Consensus 81 ~~~~~el~~~I~~lN~D~~V~GIlvqlPL~~P~~id~~ 118 (216)
-++.+++.+.++++++||+|.+|++. +|+| +-|..
T Consensus 20 ~~~~~~l~~~l~~a~~d~~v~~ivL~--~~s~-Gg~~~ 54 (211)
T cd07019 20 NVGGDTTAAQIRDARLDPKVKAIVLR--VNSP-GGSVT 54 (211)
T ss_pred ccCHHHHHHHHHHHhhCCCceEEEEE--EcCC-CcCHH
Confidence 45679999999999999999999998 4433 45543
No 494
>TIGR00106 uncharacterized protein, MTH1187 family. This protein has been crystallized in both Methanobacterium thermoautotrophicum and yeast, but its function remains unknown. Both crystal structures showed sulfate ions bound at the interface of two dimers to form a tetramer.
Probab=38.32 E-value=96 Score=23.30 Aligned_cols=54 Identities=20% Similarity=0.339 Sum_probs=40.8
Q ss_pred EEEEEeC-CCcchHHHHHHHHHHHHHcCcceEEEeCCCCC--CHHHHHHHHHHhcCC
Q psy7981 44 LAIVQVG-GREDSNVYIRMKMKAAKEIGIDAQHVKLPRSI--TEIELLSRLKKLNED 97 (216)
Q Consensus 44 LaiI~vg-~~~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~--~~~el~~~I~~lN~D 97 (216)
+.++=.| .+++-..|+..-++..++-|++++...+.-.+ +-+++++.|++..+-
T Consensus 5 isv~P~g~~~~s~s~yVa~~i~~l~~sGl~y~~~pm~T~IEGe~dev~~~i~~~~e~ 61 (97)
T TIGR00106 5 VSIIPIGTVGASVSSYVAAAIEVLKESGLKYELHPMGTLIEGDLDELFEAIKAIHEA 61 (97)
T ss_pred EEEeecCCCCCcHHHHHHHHHHHHHHcCCCeEecCCccEEecCHHHHHHHHHHHHHH
Confidence 4566667 55555679999999999999999988776443 368888888877543
No 495
>PRK15408 autoinducer 2-binding protein lsrB; Provisional
Probab=38.29 E-value=1.3e+02 Score=26.97 Aligned_cols=65 Identities=17% Similarity=0.135 Sum_probs=41.9
Q ss_pred ceEEEEEeC-CCcchHHHHHHHHHHHHHcCcceEEEeCCCCCCHHHHHHHHHHhcCCCCccEEEEeCCC
Q psy7981 42 PGLAIVQVG-GREDSNVYIRMKMKAAKEIGIDAQHVKLPRSITEIELLSRLKKLNEDPSVHGIIVQMPL 109 (216)
Q Consensus 42 P~LaiI~vg-~~~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvqlPL 109 (216)
.++++|.-. ++|=-....+...++|++.|+++.. .-|.+.+.++-.+.|+.+-. ..|+||++. |.
T Consensus 24 ~~i~~v~k~~~~pf~~~~~~Gi~~aa~~~G~~v~~-~~~~~~d~~~q~~~i~~li~-~~vdgIiv~-~~ 89 (336)
T PRK15408 24 ERIAFIPKLVGVGFFTSGGNGAKEAGKELGVDVTY-DGPTEPSVSGQVQLINNFVN-QGYNAIIVS-AV 89 (336)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHHHHHHhCCEEEE-ECCCCCCHHHHHHHHHHHHH-cCCCEEEEe-cC
Confidence 356555532 2343344456788999999998874 34555555555567766653 579999995 54
No 496
>PRK13265 glycine/sarcosine/betaine reductase complex protein A; Reviewed
Probab=38.28 E-value=49 Score=27.02 Aligned_cols=32 Identities=28% Similarity=0.472 Sum_probs=25.9
Q ss_pred CCCCCeEEEec-CCCcccHHHHHHhhhCCCEEE
Q psy7981 167 TIAGTNAVVLG-RSKIVGTPAAELLKWKHATVT 198 (216)
Q Consensus 167 ~l~Gk~vvViG-rS~~VG~Pla~lL~~~~ATVt 198 (216)
-|+||+++||| |..+=|-.+..-+...||.|.
T Consensus 3 ~l~gKkviiiGdRDGiPgpAie~c~k~~gaevv 35 (154)
T PRK13265 3 LLEGKKVIIIGDRDGIPGPAIEECVKTTGAEVV 35 (154)
T ss_pred cccCcEEEEEecCCCCCcHHHHHHHhccCceEE
Confidence 36899999999 777778778877777888764
No 497
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=38.17 E-value=1.4e+02 Score=23.04 Aligned_cols=38 Identities=13% Similarity=0.242 Sum_probs=27.2
Q ss_pred EEEEEeCCCc--chHHHHHHHHHHHHHcCcceEEEeCCCC
Q psy7981 44 LAIVQVGGRE--DSNVYIRMKMKAAKEIGIDAQHVKLPRS 81 (216)
Q Consensus 44 LaiI~vg~~~--as~~Yv~~k~k~a~~~Gi~~~~~~l~~~ 81 (216)
+.+|.-..++ -+...++.-.+.+++.|++++.+++.+.
T Consensus 3 ilii~gS~r~~~~t~~l~~~~~~~l~~~g~e~~~i~l~~~ 42 (152)
T PF03358_consen 3 ILIINGSPRKNSNTRKLAEAVAEQLEEAGAEVEVIDLADY 42 (152)
T ss_dssp EEEEESSSSTTSHHHHHHHHHHHHHHHTTEEEEEEECTTS
T ss_pred EEEEECcCCCCCHHHHHHHHHHHHHHHcCCEEEEEecccc
Confidence 4444333344 4556678888888888999999999874
No 498
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=38.17 E-value=38 Score=31.61 Aligned_cols=35 Identities=26% Similarity=0.297 Sum_probs=31.1
Q ss_pred CCCeEEEecCCCcccHHHHHHhhhC-CCEEEEecCC
Q psy7981 169 AGTNAVVLGRSKIVGTPAAELLKWK-HATVTVCHSK 203 (216)
Q Consensus 169 ~Gk~vvViGrS~~VG~Pla~lL~~~-~ATVtichs~ 203 (216)
..++|.|+|.+..+|+-+..+|.++ +..++...+.
T Consensus 37 ~~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~ 72 (381)
T PLN02968 37 EKKRIFVLGASGYTGAEVRRLLANHPDFEITVMTAD 72 (381)
T ss_pred cccEEEEECCCChHHHHHHHHHHhCCCCeEEEEECh
Confidence 5679999999999999999999998 8888887764
No 499
>cd06274 PBP1_FruR Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs. Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to members of the type I periplasmic binding protein superfamily. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor
Probab=37.96 E-value=1.9e+02 Score=23.89 Aligned_cols=52 Identities=13% Similarity=0.014 Sum_probs=32.8
Q ss_pred CcchHHHHHHHHHHHHHcCcceEEEeCCCCCCHHHHHHHHHHhcCCCCccEEEEe
Q psy7981 52 REDSNVYIRMKMKAAKEIGIDAQHVKLPRSITEIELLSRLKKLNEDPSVHGIIVQ 106 (216)
Q Consensus 52 ~~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq 106 (216)
++--....+...+.|++.|.++....... +.+...+.++.+-. .+++||++.
T Consensus 11 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~~~~~i~~l~~-~~vdgiii~ 62 (264)
T cd06274 11 NRSFARIAKRLEALARERGYQLLIACSDD--DPETERETVETLIA-RQVDALIVA 62 (264)
T ss_pred CchHHHHHHHHHHHHHHCCCEEEEEeCCC--CHHHHHHHHHHHHH-cCCCEEEEc
Confidence 34344445677888999999887765433 23444455555422 468899996
No 500
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=37.92 E-value=77 Score=27.46 Aligned_cols=51 Identities=16% Similarity=0.204 Sum_probs=35.0
Q ss_pred ccCCHHHHHHHHHHhCCCCCCCeEEEecCCCcccHHHHHHhhhCCCEEEEecC
Q psy7981 150 IPCTPNGVLELIKRTNVTIAGTNAVVLGRSKIVGTPAAELLKWKHATVTVCHS 202 (216)
Q Consensus 150 ~PcTa~av~~lL~~~~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~ATVtichs 202 (216)
++|.....+..++..++ -.|.+|+|.|-+. +|.-+..++...|+.|+++.+
T Consensus 144 l~~~~~ta~~~l~~~~~-~~~~~vlI~g~g~-iG~~~~~~a~~~G~~v~~~~~ 194 (330)
T cd08245 144 LLCAGITVYSALRDAGP-RPGERVAVLGIGG-LGHLAVQYARAMGFETVAITR 194 (330)
T ss_pred hhhhHHHHHHHHHhhCC-CCCCEEEEECCCH-HHHHHHHHHHHCCCEEEEEeC
Confidence 34443334444444332 4688999998655 999999999999999888754
Done!