RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy7981
(216 letters)
>gnl|CDD|223268 COG0190, FolD, 5,10-methylene-tetrahydrofolate
dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase
[Coenzyme metabolism].
Length = 283
Score = 229 bits (586), Expect = 9e-76
Identities = 94/202 (46%), Positives = 134/202 (66%), Gaps = 4/202 (1%)
Query: 11 QILSGTAVSGDIREGLKERVKKLKERLPDFEPGLAIVQVGGREDSNVYIRMKMKAAKEIG 70
I+ G A++ IRE LKE+V+ LK + F+PGLA++ VG S VY+R K KAA+EIG
Sbjct: 1 MIIDGKALAEKIREELKEKVEALKAK-GGFKPGLAVILVGDDPASQVYVRSKKKAAEEIG 59
Query: 71 IDAQHVKLPRSITEIELLSRLKKLNEDPSVHGIIVQMPLDSDNDINAMLVTDSVSPEKDV 130
I ++ LP ITE ELL+ + +LN DP V GI+VQ+PL ++ + ++ PEKDV
Sbjct: 60 IASELYDLPEDITEEELLALIDELNADPEVDGILVQLPL--PKHLDEQKLLQAIDPEKDV 117
Query: 131 DGLNTINEGRVAIGDMNGFIPCTPNGVLELIKRTNVTIAGTNAVVLGRSKIVGTPAAELL 190
DG + N G++A G+ GF+PCTP G++ L++ + + G N VV+GRS IVG P A LL
Sbjct: 118 DGFHPYNLGKLAQGE-PGFLPCTPAGIMTLLEEYGIDLRGKNVVVVGRSNIVGKPLALLL 176
Query: 191 KWKHATVTVCHSKTKNIQDVVK 212
+ATVTVCHS+TK++ + K
Sbjct: 177 LNANATVTVCHSRTKDLASITK 198
>gnl|CDD|184560 PRK14190, PRK14190, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 284
Score = 209 bits (534), Expect = 7e-68
Identities = 97/203 (47%), Positives = 139/203 (68%), Gaps = 5/203 (2%)
Query: 10 AQILSGTAVSGDIREGLKERVKKLKERLPDFEPGLAIVQVGGREDSNVYIRMKMKAAKEI 69
A I+ G V+ + RE LKE V KLKE+ PGLA++ VG S+ Y+R K KAA+++
Sbjct: 3 AVIIDGKEVAKEKREQLKEEVVKLKEQ--GIVPGLAVILVGDDPASHSYVRGKKKAAEKV 60
Query: 70 GIDAQHVKLPRSITEIELLSRLKKLNEDPSVHGIIVQMPLDSDNDINAMLVTDSVSPEKD 129
GI ++ + P ITE ELL+ + +LN DP ++GI+VQ+PL I+ V + +SPEKD
Sbjct: 61 GIYSELYEFPADITEEELLALIDRLNADPRINGILVQLPLPKH--IDEKAVIERISPEKD 118
Query: 130 VDGLNTINEGRVAIGDMNGFIPCTPNGVLELIKRTNVTIAGTNAVVLGRSKIVGTPAAEL 189
VDG + IN GR+ +G + F+PCTP+G+LEL+K N+ I+G + VV+GRS IVG P +L
Sbjct: 119 VDGFHPINVGRMMLGQ-DTFLPCTPHGILELLKEYNIDISGKHVVVVGRSNIVGKPVGQL 177
Query: 190 LKWKHATVTVCHSKTKNIQDVVK 212
L ++ATVT CHSKTKN+ ++ K
Sbjct: 178 LLNENATVTYCHSKTKNLAELTK 200
>gnl|CDD|184559 PRK14189, PRK14189, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 285
Score = 185 bits (471), Expect = 2e-58
Identities = 82/198 (41%), Positives = 124/198 (62%), Gaps = 5/198 (2%)
Query: 10 AQILSGTAVSGDIREGLKERVKKLKERLPDFEPGLAIVQVGGREDSNVYIRMKMKAAKEI 69
AQ++ G A+S +R +R L R +PGLA++ VG S VY+R K+KA ++
Sbjct: 3 AQLIDGNALSKQLRAEAAQRAAALTAR--GHQPGLAVILVGDNPASQVYVRNKVKACEDN 60
Query: 70 GIDAQHVKLPRSITEIELLSRLKKLNEDPSVHGIIVQMPLDSDNDINAMLVTDSVSPEKD 129
G + + P ++E ELL+R+ +LN DP +HGI+VQ+PL D + V ++++PEKD
Sbjct: 61 GFHSLKDRYPADLSEAELLARIDELNRDPKIHGILVQLPLPKHIDSHK--VIEAIAPEKD 118
Query: 130 VDGLNTINEGRVAIGDMNGFIPCTPNGVLELIKRTNVTIAGTNAVVLGRSKIVGTPAAEL 189
VDG + N G + G F PCTP GV+++++ + + G +AVV+GRS IVG P A L
Sbjct: 119 VDGFHVANAGALMTG-QPLFRPCTPYGVMKMLESIGIPLRGAHAVVIGRSNIVGKPMAML 177
Query: 190 LKWKHATVTVCHSKTKNI 207
L ATVT+CHSKT+++
Sbjct: 178 LLQAGATVTICHSKTRDL 195
>gnl|CDD|184558 PRK14188, PRK14188, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 296
Score = 184 bits (469), Expect = 5e-58
Identities = 85/205 (41%), Positives = 129/205 (62%), Gaps = 4/205 (1%)
Query: 9 QAQILSGTAVSGDIREGLKERVKKLKERLPDFEPGLAIVQVGGREDSNVYIRMKMKAAKE 68
A I+ G A + D+R + V +LK PGLA+V VG S VY+R K K KE
Sbjct: 1 MATIIDGKAFAADVRATVAAEVARLKAAH-GVTPGLAVVLVGEDPASQVYVRSKGKQTKE 59
Query: 69 IGIDAQHVKLPRSITEIELLSRLKKLNEDPSVHGIIVQMPLDSDNDINAMLVTDSVSPEK 128
G+ + KLP ++ ELL+ + +LN DP++HGI+VQ+PL +++ V ++ PEK
Sbjct: 60 AGMASFEHKLPADTSQAELLALIARLNADPAIHGILVQLPLP--KHLDSEAVIQAIDPEK 117
Query: 129 DVDGLNTINEGRVAIGDMNGFIPCTPNGVLELIKRTNVTIAGTNAVVLGRSKIVGTPAAE 188
DVDGL+ +N GR+A G+ +PCTP G + L++R + ++G NAVV+GRS +VG P A+
Sbjct: 118 DVDGLHVVNAGRLATGE-TALVPCTPLGCMMLLRRVHGDLSGLNAVVIGRSNLVGKPMAQ 176
Query: 189 LLKWKHATVTVCHSKTKNIQDVVKS 213
LL +ATVT+ HS+T+++ V +
Sbjct: 177 LLLAANATVTIAHSRTRDLPAVCRR 201
>gnl|CDD|172660 PRK14172, PRK14172, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 278
Score = 181 bits (461), Expect = 6e-57
Identities = 83/202 (41%), Positives = 129/202 (63%), Gaps = 4/202 (1%)
Query: 11 QILSGTAVSGDIREGLKERVKKLKERLPDFEPGLAIVQVGGREDSNVYIRMKMKAAKEIG 70
QI++G V+ I+E +K V++ KE P +A + VG S Y+ + K A +G
Sbjct: 3 QIINGKEVALKIKEEIKNFVEERKENGLSI-PKIASILVGNDGGSIYYMNNQEKVANSLG 61
Query: 71 IDAQHVKLPRSITEIELLSRLKKLNEDPSVHGIIVQMPLDSDNDINAMLVTDSVSPEKDV 130
ID + +KL SI+E +L++ +++LN+D +VHGI++Q+PL ++ +T+ + KD+
Sbjct: 62 IDFKKIKLDESISEEDLINEIEELNKDNNVHGIMLQLPLP--KHLDEKKITNKIDANKDI 119
Query: 131 DGLNTINEGRVAIGDMNGFIPCTPNGVLELIKRTNVTIAGTNAVVLGRSKIVGTPAAELL 190
D L I+ G+ G+ F+PCTPN V+ LIK N+ I G VV+GRS IVG P A+LL
Sbjct: 120 DCLTFISVGKFYKGE-KCFLPCTPNSVITLIKSLNIDIEGKEVVVIGRSNIVGKPVAQLL 178
Query: 191 KWKHATVTVCHSKTKNIQDVVK 212
++ATVT+CHSKTKN+++V K
Sbjct: 179 LNENATVTICHSKTKNLKEVCK 200
>gnl|CDD|236760 PRK10792, PRK10792, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 285
Score = 180 bits (459), Expect = 1e-56
Identities = 79/204 (38%), Positives = 121/204 (59%), Gaps = 6/204 (2%)
Query: 10 AQILSGTAVSGDIREGLKERVKKLKERLPDFEPGLAIVQVGGREDSNVYIRMKMKAAKEI 69
A+I+ G ++ +R + ++V+ PGLA+V VG S VY+ K KA +E+
Sbjct: 3 AKIIDGKTIAQQVRSEVAQKVQARVAA-GLRAPGLAVVLVGSDPASQVYVASKRKACEEV 61
Query: 70 GIDAQHVKLPRSITEIELLSRLKKLNEDPSVHGIIVQMPLDSDNDINAMLVTDSVSPEKD 129
G ++ LP + +E ELL+ + +LN DP++ GI+VQ+PL I+ + V + + P+KD
Sbjct: 62 GFVSRSYDLPETTSEAELLALIDELNADPTIDGILVQLPL--PAHIDNVKVLERIHPDKD 119
Query: 130 VDGLNTINEGRVAIGDMNGFIPCTPNGVLELIKRTNVTIAGTNAVVLGRSKIVGTPAA-E 188
VDG + N GR+A + PCTP G++ L++R + G NAVV+G S IVG P + E
Sbjct: 120 VDGFHPYNVGRLAQ-RIPLLRPCTPRGIMTLLERYGIDTYGLNAVVVGASNIVGRPMSLE 178
Query: 189 LLKWKHATVTVCHSKTKNIQDVVK 212
LL TVTVCH TKN++ V+
Sbjct: 179 LLLAG-CTVTVCHRFTKNLRHHVR 201
>gnl|CDD|178131 PLN02516, PLN02516, methylenetetrahydrofolate dehydrogenase
(NADP+).
Length = 299
Score = 179 bits (455), Expect = 7e-56
Identities = 94/204 (46%), Positives = 133/204 (65%), Gaps = 4/204 (1%)
Query: 10 AQILSGTAVSGDIREGLKERVKKLKERLPDFEPGLAIVQVGGREDSNVYIRMKMKAAKEI 69
AQI+ G A++ IR + E V +L E+ PGLA+V VG R+DS Y+ MK KA E+
Sbjct: 9 AQIIDGKAIAKAIRSEIAEEVAQLSEKHGKV-PGLAVVIVGSRKDSQTYVNMKRKACAEV 67
Query: 70 GIDAQHVKLPRSITEIELLSRLKKLNEDPSVHGIIVQMPLDSDNDINAMLVTDSVSPEKD 129
GI + V LP +I+E EL+S++ +LN +P VHGI+VQ+PL IN + + +S EKD
Sbjct: 68 GIKSFDVDLPENISEAELISKVHELNANPDVHGILVQLPL--PKHINEEKILNEISLEKD 125
Query: 130 VDGLNTINEGRVAI-GDMNGFIPCTPNGVLELIKRTNVTIAGTNAVVLGRSKIVGTPAAE 188
VDG + +N G++A+ G F+PCTP G LEL+ R+ + I G AVV+GRS IVG P +
Sbjct: 126 VDGFHPLNIGKLAMKGREPLFLPCTPKGCLELLSRSGIPIKGKKAVVVGRSNIVGLPVSL 185
Query: 189 LLKWKHATVTVCHSKTKNIQDVVK 212
LL ATVTV HS+T + + +V+
Sbjct: 186 LLLKADATVTVVHSRTPDPESIVR 209
>gnl|CDD|172679 PRK14191, PRK14191, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 285
Score = 174 bits (444), Expect = 2e-54
Identities = 75/202 (37%), Positives = 120/202 (59%), Gaps = 4/202 (1%)
Query: 11 QILSGTAVSGDIREGLKERVKKLKERLPDFEPGLAIVQVGGREDSNVYIRMKMKAAKEIG 70
+L G A+S I + LK +++ L + P LA++ VG S Y+ MK+KA + +G
Sbjct: 2 VLLDGKALSYKIEKDLKNKIQILTAQ-TGKRPKLAVILVGKDPASQTYVNMKIKACERVG 60
Query: 71 IDAQHVKLPRSITEIELLSRLKKLNEDPSVHGIIVQMPLDSDNDINAMLVTDSVSPEKDV 130
+D+ L + TE ELLS +K LN D ++ GI+VQ+PL D +L +++ P KDV
Sbjct: 61 MDSDLHTLQENTTEAELLSLIKDLNTDQNIDGILVQLPLPRHIDTKMVL--EAIDPNKDV 118
Query: 131 DGLNTINEGRVAIGDMNGFIPCTPNGVLELIKRTNVTIAGTNAVVLGRSKIVGTPAAELL 190
DG + +N G++ ++GF+P TP GV+ L+K ++ I G + V++G S IVG P A L+
Sbjct: 119 DGFHPLNIGKLCSQ-LDGFVPATPMGVMRLLKHYHIEIKGKDVVIIGASNIVGKPLAMLM 177
Query: 191 KWKHATVTVCHSKTKNIQDVVK 212
A+V+VCH TK++ +
Sbjct: 178 LNAGASVSVCHILTKDLSFYTQ 199
>gnl|CDD|215332 PLN02616, PLN02616, tetrahydrofolate dehydrogenase/cyclohydrolase,
putative.
Length = 364
Score = 174 bits (443), Expect = 2e-53
Identities = 96/212 (45%), Positives = 140/212 (66%), Gaps = 4/212 (1%)
Query: 2 AESAVQQQAQILSGTAVSGDIREGLKERVKKLKERLPDFEPGLAIVQVGGREDSNVYIRM 61
A++ + A+++ G AV+ IR+ + V ++KE + PGLA++ VG R+DS Y+R
Sbjct: 65 ADTGSEGGAKVIDGKAVAKKIRDEITIEVSRMKESI-GVVPGLAVILVGDRKDSATYVRN 123
Query: 62 KMKAAKEIGIDAQHVKLPRSITEIELLSRLKKLNEDPSVHGIIVQMPLDSDNDINAMLVT 121
K KA +GI++ V+LP TE E+L + N DPSVHGI+VQ+PL S D +L
Sbjct: 124 KKKACDSVGINSFEVRLPEDSTEQEVLKFISGFNNDPSVHGILVQLPLPSHMDEQNIL-- 181
Query: 122 DSVSPEKDVDGLNTINEGRVAI-GDMNGFIPCTPNGVLELIKRTNVTIAGTNAVVLGRSK 180
++VS EKDVDG + +N GR+A+ G F+PCTP G +EL+ R NV I G AVV+GRS
Sbjct: 182 NAVSIEKDVDGFHPLNIGRLAMRGREPLFVPCTPKGCIELLHRYNVEIKGKRAVVIGRSN 241
Query: 181 IVGTPAAELLKWKHATVTVCHSKTKNIQDVVK 212
IVG PAA LL+ + ATV++ HS+TKN +++ +
Sbjct: 242 IVGMPAALLLQREDATVSIVHSRTKNPEEITR 273
>gnl|CDD|237635 PRK14184, PRK14184, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 286
Score = 171 bits (435), Expect = 4e-53
Identities = 85/207 (41%), Positives = 123/207 (59%), Gaps = 8/207 (3%)
Query: 11 QILSGTAVSGDIREGLKERVKKLKERLPDFEPGLAIVQVGGREDSNVYIRMKMKAAKEIG 70
+L G A + IRE LK V L R PGLA++ VG S VY+R K +A ++ G
Sbjct: 2 LLLDGKATAATIREELKTEVAALTAR-HGRAPGLAVILVGEDPASQVYVRNKERACEDAG 60
Query: 71 IDAQHVKLPRSITEIELLSRLKKLNEDPSVHGIIVQMPLDSDNDINAMLVTDSVSPEKDV 130
I ++ +LP T+ EL + +LN P + GI++Q+PL D L + + P KDV
Sbjct: 61 IVSEAFRLPADTTQEELEDLIAELNARPDIDGILLQLPLPKGLDSQRCL--ELIDPAKDV 118
Query: 131 DGLNTINEGRVAIGDMNGFIPCTPNGVLELIKRTNVTIAGTNAVVLGRSKIVGTPAAELL 190
DG + N GR+A+G + GF PCTP GV+ L++R ++ AG AVV+GRS IVG P A +L
Sbjct: 119 DGFHPENMGRLALG-LPGFRPCTPAGVMTLLERYGLSPAGKKAVVVGRSNIVGKPLALML 177
Query: 191 ----KWKHATVTVCHSKTKNIQDVVKS 213
K+ +ATVTVCHS+T ++ + +
Sbjct: 178 GAPGKFANATVTVCHSRTPDLAEECRE 204
>gnl|CDD|178485 PLN02897, PLN02897, tetrahydrofolate dehydrogenase/cyclohydrolase,
putative.
Length = 345
Score = 172 bits (438), Expect = 9e-53
Identities = 87/207 (42%), Positives = 132/207 (63%), Gaps = 4/207 (1%)
Query: 7 QQQAQILSGTAVSGDIREGLKERVKKLKERLPDFEPGLAIVQVGGREDSNVYIRMKMKAA 66
+Q+ ++ G ++ +IR + V+K+K+ + PGLA+V VG + DS Y+R K+KA
Sbjct: 53 EQKTVVIDGNVIAEEIRTKIASEVRKMKKAVGKV-PGLAVVLVGQQRDSQTYVRNKIKAC 111
Query: 67 KEIGIDAQHVKLPRSITEIELLSRLKKLNEDPSVHGIIVQMPLDSDNDINAMLVTDSVSP 126
+E GI + +LP TE ++LS L+K NED S+HGI+VQ+PL D + +L + V
Sbjct: 112 EETGIKSLLAELPEDCTEGQILSALRKFNEDTSIHGILVQLPLPQHLDESKIL--NMVRL 169
Query: 127 EKDVDGLNTINEGRVAI-GDMNGFIPCTPNGVLELIKRTNVTIAGTNAVVLGRSKIVGTP 185
EKDVDG + +N G +A+ G F+ CTP G +EL+ R+ V IAG NAVV+GRS IVG P
Sbjct: 170 EKDVDGFHPLNVGNLAMRGREPLFVSCTPKGCVELLIRSGVEIAGKNAVVIGRSNIVGLP 229
Query: 186 AAELLKWKHATVTVCHSKTKNIQDVVK 212
+ LL+ ATV+ H+ TK+ + + +
Sbjct: 230 MSLLLQRHDATVSTVHAFTKDPEQITR 256
>gnl|CDD|237634 PRK14179, PRK14179, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 284
Score = 168 bits (428), Expect = 5e-52
Identities = 83/203 (40%), Positives = 130/203 (64%), Gaps = 4/203 (1%)
Query: 10 AQILSGTAVSGDIREGLKERVKKLKERLPDFEPGLAIVQVGGREDSNVYIRMKMKAAKEI 69
+I+ G A++ ++ L E+V KLKE PGL ++ VG S VY+R K ++A
Sbjct: 2 TEIIDGKALAQKMQAELAEKVAKLKEE-KGIVPGLVVILVGDNPASQVYVRNKERSALAA 60
Query: 70 GIDAQHVKLPRSITEIELLSRLKKLNEDPSVHGIIVQMPLDSDNDINAMLVTDSVSPEKD 129
G ++ V+LP +I++ ELL +++ N+DP+ HGI+VQ+PL IN + ++ P+KD
Sbjct: 61 GFKSEVVRLPETISQEELLDLIERYNQDPTWHGILVQLPLP--KHINEEKILLAIDPKKD 118
Query: 130 VDGLNTINEGRVAIGDMNGFIPCTPNGVLELIKRTNVTIAGTNAVVLGRSKIVGTPAAEL 189
VDG + +N G + G IPCTP G++E+ + NV + G +AVV+GRS IVG P A+L
Sbjct: 119 VDGFHPMNTGHLWSGRPV-MIPCTPAGIMEMFREYNVELEGKHAVVIGRSNIVGKPMAQL 177
Query: 190 LKWKHATVTVCHSKTKNIQDVVK 212
L K+ATVT+ HS+T+N+ +V +
Sbjct: 178 LLDKNATVTLTHSRTRNLAEVAR 200
>gnl|CDD|172662 PRK14174, PRK14174, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 295
Score = 167 bits (424), Expect = 2e-51
Identities = 88/207 (42%), Positives = 125/207 (60%), Gaps = 8/207 (3%)
Query: 11 QILSGTAVSGDIREGLKERVKKLKERLPDFEPGLAIVQVGGREDSNVYIRMKMKAAKEIG 70
I+ G VS D++ LK RV+ + + PGL ++ VG S VY+R K K+ KEIG
Sbjct: 2 LIIDGKKVSLDLKNELKTRVEAYRAKT-GKVPGLTVIIVGEDPASQVYVRNKAKSCKEIG 60
Query: 71 IDAQHVKLPRSITEIELLSRLKKLNEDPSVHGIIVQMPLDSDNDINAMLVTDSVSPEKDV 130
+++ ++LP TE LL +++ LN DP VHGI+VQ PL I+ VT ++ P KDV
Sbjct: 61 MNSTVIELPADTTEEHLLKKIEDLNNDPDVHGILVQQPLPK--QIDEFAVTLAIDPAKDV 118
Query: 131 DGLNTINEGRVAIGDMNG-FIPCTPNGVLELIKRTNVTIAGTNAVVLGRSKIVGTPAAEL 189
DG + N GR+ +G ++ F+ CTP G+LEL+ R N+ G + VV+GRS IVG P A L
Sbjct: 119 DGFHPENLGRLVMGHLDKCFVSCTPYGILELLGRYNIETKGKHCVVVGRSNIVGKPMANL 178
Query: 190 ----LKWKHATVTVCHSKTKNIQDVVK 212
LK + TVT+CHS TK+I +
Sbjct: 179 MLQKLKESNCTVTICHSATKDIPSYTR 205
>gnl|CDD|184552 PRK14175, PRK14175, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 286
Score = 164 bits (416), Expect = 4e-50
Identities = 86/203 (42%), Positives = 139/203 (68%), Gaps = 5/203 (2%)
Query: 10 AQILSGTAVSGDIREGLKERVKKLKERLPDFEPGLAIVQVGGREDSNVYIRMKMKAAKEI 69
A+IL G ++ D R+GL+++V+ LKE+ F P L+++ VG S Y+R K KAA++I
Sbjct: 3 AKILDGKQIAKDYRQGLQDQVEALKEK--GFTPKLSVILVGNDGASQSYVRSKKKAAEKI 60
Query: 70 GIDAQHVKLPRSITEIELLSRLKKLNEDPSVHGIIVQMPLDSDNDINAMLVTDSVSPEKD 129
G+ ++ V L + TE E+L+ L +LN D SV GI+VQ+PL ++ + ++++PEKD
Sbjct: 61 GMISEIVHLEETATEEEVLNELNRLNNDDSVSGILVQVPLPKQ--VSEQKILEAINPEKD 118
Query: 130 VDGLNTINEGRVAIGDMNGFIPCTPNGVLELIKRTNVTIAGTNAVVLGRSKIVGTPAAEL 189
VDG + IN G++ I D F+PCTP G++E++K ++ + G NAVV+GRS IVG P ++L
Sbjct: 119 VDGFHPINIGKLYI-DEQTFVPCTPLGIMEILKHADIDLEGKNAVVIGRSHIVGQPVSKL 177
Query: 190 LKWKHATVTVCHSKTKNIQDVVK 212
L K+A+VT+ HS++K++ +K
Sbjct: 178 LLQKNASVTILHSRSKDMASYLK 200
>gnl|CDD|172669 PRK14181, PRK14181, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 287
Score = 162 bits (412), Expect = 1e-49
Identities = 80/206 (38%), Positives = 130/206 (63%), Gaps = 11/206 (5%)
Query: 12 ILSGTAVSGDIREGLKERVKKLKERLPDFEPGLAIVQVGGREDSNVYIRMKMKAAKEIGI 71
+L G + I +KE + PGLA+V +G S VY+ MK+K A ++G+
Sbjct: 2 LLKGAPAAEHILATIKENISASSTA-----PGLAVVLIGNDPASEVYVGMKVKKATDLGM 56
Query: 72 DAQHVKLPRSITEIELLSRLKKLNEDPSVHGIIVQMPLDSDNDINAMLVTDSVSPEKDVD 131
++ +LP T ++L + +LN DP++HGI+VQ+PL D A+L ++SP+KDVD
Sbjct: 57 VSKAHRLPSDATLSDILKLIHRLNNDPNIHGILVQLPLPKHLDAQAIL--QAISPDKDVD 114
Query: 132 GLNTINEGRVAIGDMNGFIPCTPNGVLELIKRTNVTIAGTNAVVLGRSKIVGTPAAELLK 191
GL+ +N G++ +G+ +GFIPCTP G++EL+K + + G + ++GRS IVG P A LL
Sbjct: 115 GLHPVNMGKLLLGETDGFIPCTPAGIIELLKYYEIPLHGRHVAIVGRSNIVGKPLAALLM 174
Query: 192 WKH----ATVTVCHSKTKNIQDVVKS 213
KH ATVT+ HS+++N+ +++K+
Sbjct: 175 QKHPDTNATVTLLHSQSENLTEILKT 200
>gnl|CDD|172675 PRK14187, PRK14187, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 294
Score = 161 bits (410), Expect = 4e-49
Identities = 81/202 (40%), Positives = 124/202 (61%), Gaps = 4/202 (1%)
Query: 9 QAQILSGTAVSGDIREGLKERVKKLKERLPDFEPGLAIVQVGGREDSNVYIRMKMKAAKE 68
+ I+ G ++ DI E L + LK + F P L ++ VG S +Y+R K + A+
Sbjct: 1 ETNIIDGKKIANDITEILATCIDDLKRQHNLF-PCLIVILVGDDPASQLYVRNKQRKAEM 59
Query: 69 IGIDAQHVKLPRSITEIELLSRLKKLNEDPSVHGIIVQMPLDSDNDINAMLVTDSVSPEK 128
+G+ ++ + LP +I+E L+ ++ +LN D SVHGI+VQ+P+ N I+ L+ +++ PEK
Sbjct: 60 LGLRSETILLPSTISESSLIEKINELNNDDSVHGILVQLPV--PNHIDKNLIINTIDPEK 117
Query: 129 DVDGLNTINEGRVAIGD-MNGFIPCTPNGVLELIKRTNVTIAGTNAVVLGRSKIVGTPAA 187
DVDG + N GR+ G N IPCTP G L LIK ++G++AVV+GRS IVG P A
Sbjct: 118 DVDGFHNENVGRLFTGQKKNCLIPCTPKGCLYLIKTITRNLSGSDAVVIGRSNIVGKPMA 177
Query: 188 ELLKWKHATVTVCHSKTKNIQD 209
LL ++ TVT HS T+++ D
Sbjct: 178 CLLLGENCTVTTVHSATRDLAD 199
>gnl|CDD|237637 PRK14193, PRK14193, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 284
Score = 160 bits (408), Expect = 6e-49
Identities = 80/205 (39%), Positives = 117/205 (57%), Gaps = 7/205 (3%)
Query: 10 AQILSGTAVSGDIREGLKERVKKLKERLPDFEPGLAIVQVGGREDSNVYIRMKMKAAKEI 69
A IL G A + +I+ L ERV LKE+ PGL V VG S Y+R K + E+
Sbjct: 3 AIILDGKATADEIKADLAERVAALKEK--GITPGLGTVLVGDDPGSQAYVRGKHRDCAEV 60
Query: 70 GIDAQHVKLPRSITEIELLSRLKKLNEDPSVHGIIVQMPLDSDNDINAMLVTDSVSPEKD 129
GI + LP T+ EL + + +LN DP+ G IVQ+PL D NA+L + + P KD
Sbjct: 61 GITSIRRDLPADATQEELNAVIDELNADPACTGYIVQLPLPKHLDENAVL--ERIDPAKD 118
Query: 130 VDGLNTINEGRVAIGDMNGFIPCTPNGVLELIKRTNVTIAGTNAVVLGRSKIVGTPAAEL 189
DGL+ N GR+ + + +PCTP G++ L++R +V +AG + VV+GR VG P L
Sbjct: 119 ADGLHPTNLGRLVLNE-PAPLPCTPRGIVHLLRRYDVELAGAHVVVIGRGVTVGRPIGLL 177
Query: 190 LKWKH--ATVTVCHSKTKNIQDVVK 212
L + ATVT+CH+ T+++ +
Sbjct: 178 LTRRSENATVTLCHTGTRDLAAHTR 202
>gnl|CDD|184561 PRK14192, PRK14192, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 283
Score = 157 bits (399), Expect = 9e-48
Identities = 82/204 (40%), Positives = 130/204 (63%), Gaps = 4/204 (1%)
Query: 10 AQILSGTAVSGDIREGLKERVKKLKERLPDFEPGLAIVQVGGREDSNVYIRMKMKAAKEI 69
A +L G A++ I E L RV+ LK + P LA + VG S Y+RMK A + +
Sbjct: 3 ALVLDGKALAKQIEEELSVRVEALKAK-TGRTPILATILVGDDPASATYVRMKGNACRRV 61
Query: 70 GIDAQHVKLPRSITEIELLSRLKKLNEDPSVHGIIVQMPLDSDNDINAMLVTDSVSPEKD 129
G+D+ V+LP+ T +LL+++++LN +P VHGI++Q P+ + D A D++S KD
Sbjct: 62 GMDSLKVELPQETTTEQLLAKIEELNANPDVHGILLQHPVPAQIDERACF--DAISLAKD 119
Query: 130 VDGLNTINEGRVAIGDMNGFIPCTPNGVLELIKRTNVTIAGTNAVVLGRSKIVGTPAAEL 189
VDG+ + GR+A+G+ + TP G++ L+K N+ +AG +AVV+GRS I+G P A +
Sbjct: 120 VDGVTCLGFGRMAMGE-AAYGSATPAGIMRLLKAYNIELAGKHAVVVGRSAILGKPMAMM 178
Query: 190 LKWKHATVTVCHSKTKNIQDVVKS 213
L +ATVT+CHS+T+N+ ++VK
Sbjct: 179 LLNANATVTICHSRTQNLPELVKQ 202
>gnl|CDD|201431 pfam00763, THF_DHG_CYH, Tetrahydrofolate
dehydrogenase/cyclohydrolase, catalytic domain.
Length = 117
Score = 151 bits (384), Expect = 2e-47
Identities = 59/121 (48%), Positives = 84/121 (69%), Gaps = 4/121 (3%)
Query: 11 QILSGTAVSGDIREGLKERVKKLKERLPDFEPGLAIVQVGGREDSNVYIRMKMKAAKEIG 70
+IL G A++ I+E LKE V KLKE+ P LA++ VG S VY+R K KAA+E+G
Sbjct: 1 KILDGKALAKKIKEELKEEVAKLKEK--GITPKLAVILVGDDPASQVYVRSKRKAAEELG 58
Query: 71 IDAQHVKLPRSITEIELLSRLKKLNEDPSVHGIIVQMPLDSDNDINAMLVTDSVSPEKDV 130
I+++ ++LP ITE ELL+ ++KLN DPSVHGI+VQ+PL I+ + +++ PEKDV
Sbjct: 59 IESELIRLPEDITEEELLALIEKLNADPSVHGILVQLPLPK--HIDENKILNAIDPEKDV 116
Query: 131 D 131
D
Sbjct: 117 D 117
>gnl|CDD|184556 PRK14185, PRK14185, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 293
Score = 156 bits (396), Expect = 4e-47
Identities = 79/204 (38%), Positives = 123/204 (60%), Gaps = 8/204 (3%)
Query: 11 QILSGTAVSGDIREGLKERVKKLKERLPDFEPGLAIVQVGGREDSNVYIRMKMKAAKEIG 70
Q++ G A+S I++ + V ++ + P LA + VG S Y+ K+KA +E G
Sbjct: 2 QLIDGKAISAQIKQEIAAEVAEIVAK-GGKRPHLAAILVGHDGGSETYVANKVKACEECG 60
Query: 71 IDAQHVKLPRSITEIELLSRLKKLNEDPSVHGIIVQMPLDSDNDINAMLVTDSVSPEKDV 130
+ ++ +TE ELL+++++LN+D V G IVQ+PL I+ V +++ KDV
Sbjct: 61 FKSSLIRYESDVTEEELLAKVRELNQDDDVDGFIVQLPLP--KHISEQKVIEAIDYRKDV 118
Query: 131 DGLNTINEGRVAIGDMNGFIPCTPNGVLELIKRTNVTIAGTNAVVLGRSKIVGTPAAELL 190
DG + IN GR++IG + F+ TPNG+LEL+KR ++ +G VVLGRS IVG P A+L+
Sbjct: 119 DGFHPINVGRMSIG-LPCFVSATPNGILELLKRYHIETSGKKCVVLGRSNIVGKPMAQLM 177
Query: 191 KWKH----ATVTVCHSKTKNIQDV 210
K TVTVCHS++KN++
Sbjct: 178 MQKAYPGDCTVTVCHSRSKNLKKE 201
>gnl|CDD|172658 PRK14170, PRK14170, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 284
Score = 154 bits (389), Expect = 4e-46
Identities = 87/203 (42%), Positives = 134/203 (66%), Gaps = 5/203 (2%)
Query: 10 AQILSGTAVSGDIREGLKERVKKLKERLPDFEPGLAIVQVGGREDSNVYIRMKMKAAKEI 69
+I+ G ++ +I+E + V +L + +PGLA+V VG + S Y+R K K +E
Sbjct: 2 GEIIDGKKLAKEIQEKVTREVAELVKE--GKKPGLAVVLVGDNQASRTYVRNKQKRTEEA 59
Query: 70 GIDAQHVKLPRSITEIELLSRLKKLNEDPSVHGIIVQMPLDSDNDINAMLVTDSVSPEKD 129
G+ + ++LP ++TE +LLS +++LNED ++HGI+VQ+PL I+ V D++S +KD
Sbjct: 60 GMKSVLIELPENVTEEKLLSVVEELNEDKTIHGILVQLPLPEH--ISEEKVIDTISYDKD 117
Query: 130 VDGLNTINEGRVAIGDMNGFIPCTPNGVLELIKRTNVTIAGTNAVVLGRSKIVGTPAAEL 189
VDG + +N G + IG + F+PCTP G++ELIK T I G AVV+GRS IVG P A+L
Sbjct: 118 VDGFHPVNVGNLFIGK-DSFVPCTPAGIIELIKSTGTQIEGKRAVVIGRSNIVGKPVAQL 176
Query: 190 LKWKHATVTVCHSKTKNIQDVVK 212
L ++ATVT+ HS+TK++ V K
Sbjct: 177 LLNENATVTIAHSRTKDLPQVAK 199
>gnl|CDD|184555 PRK14183, PRK14183, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 281
Score = 152 bits (386), Expect = 1e-45
Identities = 78/198 (39%), Positives = 127/198 (64%), Gaps = 4/198 (2%)
Query: 11 QILSGTAVSGDIREGLKERVKKLKERLPDFEPGLAIVQVGGREDSNVYIRMKMKAAKEIG 70
QIL G A+S I+E +K+ V +LK + + PGLA++ VG S+ Y++MK KA +G
Sbjct: 2 QILDGKALSDKIKENVKKEVDELK-LVKNIVPGLAVILVGDDPASHTYVKMKAKACDRVG 60
Query: 71 IDAQHVKLPRSITEIELLSRLKKLNEDPSVHGIIVQMPLDSDNDINAMLVTDSVSPEKDV 130
I + ++P +I++ E+L + +N +P++ GI+VQ+PL D +L +++ P+KDV
Sbjct: 61 IYSITHEMPSTISQKEILETIAMMNNNPNIDGILVQLPLPKHIDTTKIL--EAIDPKKDV 118
Query: 131 DGLNTINEGRVAIGDMNGFIPCTPNGVLELIKRTNVTIAGTNAVVLGRSKIVGTPAAELL 190
DG + N GR+ G ++GF+PCTP GV+EL++ + + G + V+G S IVG P A LL
Sbjct: 119 DGFHPYNVGRLVTG-LDGFVPCTPLGVMELLEEYEIDVKGKDVCVVGASNIVGKPMAALL 177
Query: 191 KWKHATVTVCHSKTKNIQ 208
+ATV +CH TK+++
Sbjct: 178 LNANATVDICHIFTKDLK 195
>gnl|CDD|184551 PRK14173, PRK14173, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 287
Score = 152 bits (385), Expect = 2e-45
Identities = 81/203 (39%), Positives = 120/203 (59%), Gaps = 8/203 (3%)
Query: 10 AQILSGTAVSGDIREGLKERVKKLKERLPDFEPGLAIVQVGGREDSNVYIRMKMKAAKEI 69
A+ LSG + + L+ R+ KL F P L +V++G S Y+R+K + AK +
Sbjct: 3 ARELSGPPAAEAVYAELRARLAKLP-----FVPHLRVVRLGEDPASVSYVRLKDRQAKAL 57
Query: 70 GIDAQHVKLPRSITEIELLSRLKKLNEDPSVHGIIVQMPLDSDNDINAMLVTDSVSPEKD 129
G+ +Q LP S ++ ELL + +LN DP V GI+VQ+PL D +L +++ P KD
Sbjct: 58 GLRSQVEVLPESTSQEELLELIARLNADPEVDGILVQLPLPPHIDFQRVL--EAIDPLKD 115
Query: 130 VDGLNTINEGRVAIGDMNGFIPCTPNGVLELIKRTNVTIAGTNAVVLGRSKIVGTPAAEL 189
VDG + +N GR+ +G PCTP GV+ L+K + +AG VV+GRS IVG P A L
Sbjct: 116 VDGFHPLNVGRLWMG-GEALEPCTPAGVVRLLKHYGIPLAGKEVVVVGRSNIVGKPLAAL 174
Query: 190 LKWKHATVTVCHSKTKNIQDVVK 212
L + ATVT+ HSKT+++ V +
Sbjct: 175 LLREDATVTLAHSKTQDLPAVTR 197
>gnl|CDD|172659 PRK14171, PRK14171, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 288
Score = 152 bits (384), Expect = 2e-45
Identities = 83/199 (41%), Positives = 123/199 (61%), Gaps = 3/199 (1%)
Query: 12 ILSGTAVSGDIREGLKERVKKLKERLPDFEPGLAIVQVGGREDSNVYIRMKMKAAKEIGI 71
I+ G A++ +I LK +++LK + + P LAIV VG S +Y++ K+K A +IGI
Sbjct: 4 IIDGKALANEILADLKLEIQELKSQ-TNASPKLAIVLVGDNPASIIYVKNKIKNAHKIGI 62
Query: 72 DAQHVKLPRSITEIELLSRLKKLNEDPSVHGIIVQMPLDSDNDINAMLVTDSVSPEKDVD 131
D V L +I +L+S++ +LN D + GIIVQ+PL S D N +L +VSP KD+D
Sbjct: 63 DTLLVNLSTTIHTNDLISKINELNLDNEISGIIVQLPLPSSIDKNKIL--SAVSPSKDID 120
Query: 132 GLNTINEGRVAIGDMNGFIPCTPNGVLELIKRTNVTIAGTNAVVLGRSKIVGTPAAELLK 191
G + +N G + G GFIPCT G L +IK+ + G N V++GRS IVG P + LL
Sbjct: 121 GFHPLNVGYLHSGISQGFIPCTALGCLAVIKKYEPNLTGKNVVIIGRSNIVGKPLSALLL 180
Query: 192 WKHATVTVCHSKTKNIQDV 210
++ +VT+CHSKT N+ +
Sbjct: 181 KENCSVTICHSKTHNLSSI 199
>gnl|CDD|184553 PRK14176, PRK14176, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 287
Score = 151 bits (382), Expect = 5e-45
Identities = 74/200 (37%), Positives = 120/200 (60%), Gaps = 4/200 (2%)
Query: 9 QAQILSGTAVSGDIREGLKERVKKLKERLPDFEPGLAIVQVGGREDSNVYIRMKMKAAKE 68
+++I+ G A++ I ++ V++LK PGLA + VG S +Y+R+K KA +
Sbjct: 7 ESRIIDGKALAKKIEAEVRSGVERLKSN-RGITPGLATILVGDDPASKMYVRLKHKACER 65
Query: 69 IGIDAQHVKLPRSITEIELLSRLKKLNEDPSVHGIIVQMPLDSDNDINAMLVTDSVSPEK 128
+GI A+ LP T+ ELL + LN+ VHGI++Q+PL ++ +++ P K
Sbjct: 66 VGIRAEDQFLPADTTQEELLELIDSLNKRKDVHGILLQLPLPK--HLDPQEAMEAIDPAK 123
Query: 129 DVDGLNTINEGRVAIGDMNGFIPCTPNGVLELIKRTNVTIAGTNAVVLGRSKIVGTPAAE 188
D DG + N G++ IGD G +PCTP+GV+ ++ V I G NAV++G S +VG P A
Sbjct: 124 DADGFHPYNMGKLMIGD-EGLVPCTPHGVIRALEEYGVDIEGKNAVIVGHSNVVGKPMAA 182
Query: 189 LLKWKHATVTVCHSKTKNIQ 208
+L ++ATV+VCH T +++
Sbjct: 183 MLLNRNATVSVCHVFTDDLK 202
>gnl|CDD|172666 PRK14178, PRK14178, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 279
Score = 149 bits (378), Expect = 1e-44
Identities = 87/201 (43%), Positives = 123/201 (61%), Gaps = 8/201 (3%)
Query: 12 ILSGTAVSGDIREGLKERVKKLKERLPDFEPGLAIVQVGGREDSNVYIRMKMKAAKEIGI 71
IL G AVS E LKE + + P LA V VG S +Y+RMK +A + +GI
Sbjct: 2 ILDGKAVSEKRLELLKEEIIE-----SGLYPRLATVIVGDDPASQMYVRMKHRACERVGI 56
Query: 72 DAQHVKLPRSITEIELLSRLKKLNEDPSVHGIIVQMPLDSDNDINAMLVTDSVSPEKDVD 131
+ ++LP T +L R+++LNEDP ++GI+VQ+PL D V ++ PEKDVD
Sbjct: 57 GSVGIELPGDATTRTVLERIRRLNEDPDINGILVQLPLPKGVDTER--VIAAILPEKDVD 114
Query: 132 GLNTINEGRVAIGDMNGFIPCTPNGVLELIKRTNVTIAGTNAVVLGRSKIVGTPAAELLK 191
G + +N GR+ G + GF PCTPNG++ L+ ++IAG AVV+GRS VG P A LL
Sbjct: 115 GFHPLNLGRLVSG-LPGFAPCTPNGIMTLLHEYKISIAGKRAVVVGRSIDVGRPMAALLL 173
Query: 192 WKHATVTVCHSKTKNIQDVVK 212
ATVT+CHSKT+N++ ++
Sbjct: 174 NADATVTICHSKTENLKAELR 194
>gnl|CDD|184549 PRK14167, PRK14167, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 297
Score = 149 bits (379), Expect = 2e-44
Identities = 79/203 (38%), Positives = 114/203 (56%), Gaps = 9/203 (4%)
Query: 9 QAQILSGTAVSGDIREGLKERVKKLKERLPDFEPGLAIVQVGGREDSNVYIRMKMKAAKE 68
+I+ G AV+ IR+ L + ++ L++ PGLA V + S Y+ MK + +E
Sbjct: 1 MTEIIDGNAVAAQIRDDLTDAIETLEDA--GVTPGLATVLMSDDPASETYVSMKQRDCEE 58
Query: 69 IGIDAQHVKLPRSITEIELLSRLKKLNEDPSVHGIIVQMPLDSDNDINAMLVTDSVSPEK 128
+GI+A V++ EL + +LN D VHGI+VQMP+ D +L + P K
Sbjct: 59 VGIEAIDVEIDPDAPAEELYDTIDELNADEDVHGILVQMPVPDHVDDREVL--RRIDPAK 116
Query: 129 DVDGLNTINEGRVAIGDMNGFIPCTPNGVLELIKRTNVTIAGTNAVVLGRSKIVGTPAAE 188
DVDG + N GR+ GD F PCTP+G+ +L+ V G + VV+GRS IVG P A
Sbjct: 117 DVDGFHPENVGRLVAGDAR-FKPCTPHGIQKLLAAAGVDTEGADVVVVGRSDIVGKPMAN 175
Query: 189 LLKWK----HATVTVCHSKTKNI 207
LL K +ATVTVCHS+T ++
Sbjct: 176 LLIQKADGGNATVTVCHSRTDDL 198
>gnl|CDD|237636 PRK14186, PRK14186, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 297
Score = 148 bits (375), Expect = 7e-44
Identities = 74/204 (36%), Positives = 122/204 (59%), Gaps = 4/204 (1%)
Query: 10 AQILSGTAVSGDIREGLKERVKKLKERLPDFEPGLAIVQVGGREDSNVYIRMKMKAAKEI 69
A IL G A++ +I + L+ +++ + PGLA+++VG S VY+R K KA +
Sbjct: 2 ALILDGKALAAEIEQRLQAQIESNLPKAGR-PPGLAVLRVGDDPASAVYVRNKEKACARV 60
Query: 70 GIDAQHVKLPRSITEIELLSRLKKLNEDPSVHGIIVQMPLDSDNDINAMLVTDSVSPEKD 129
GI + LP ++ E+ + + +LN+D V GI++Q+PL D +L ++ P+KD
Sbjct: 61 GIASFGKHLPADTSQAEVEALIAQLNQDERVDGILLQLPLPKHLDEVPLLH--AIDPDKD 118
Query: 130 VDGLNTINEGRVAIGDMNGFIPCTPNGVLELIKRTNVTIAGTNAVVLGRSKIVGTPAAEL 189
DGL+ +N GR+ G+ G CTP GV+ L++ + IAG AVV+GRS +VG P A +
Sbjct: 119 ADGLHPLNLGRLVKGE-PGLRSCTPAGVMRLLRSQQIDIAGKKAVVVGRSILVGKPLALM 177
Query: 190 LKWKHATVTVCHSKTKNIQDVVKS 213
L +ATVT+ HS+T+++ + +
Sbjct: 178 LLAANATVTIAHSRTQDLASITRE 201
>gnl|CDD|172665 PRK14177, PRK14177, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 284
Score = 147 bits (373), Expect = 9e-44
Identities = 79/201 (39%), Positives = 127/201 (63%), Gaps = 4/201 (1%)
Query: 12 ILSGTAVSGDIREGLKERVKKLKERLPDFEPGLAIVQVGGREDSNVYIRMKMKAAKEIGI 71
+L G +S IR ++E +++ K + P LA + VG S Y+ MK+KA ++G+
Sbjct: 5 LLDGKKLSEKIRNEIRETIEERKTKNKRI-PKLATILVGNNPASETYVSMKVKACHKVGM 63
Query: 72 DAQHVKLPRSITEIELLSRLKKLNEDPSVHGIIVQMPLDSDNDINAMLVTDSVSPEKDVD 131
++ ++L T ELL + KLN DP+V GI++Q P+ S D A D ++ EKDVD
Sbjct: 64 GSEMIRLKEQTTTEELLGVIDKLNLDPNVDGILLQHPVPSQIDERAAF--DRIALEKDVD 121
Query: 132 GLNTINEGRVAIGDMNGFIPCTPNGVLELIKRTNVTIAGTNAVVLGRSKIVGTPAAELLK 191
G+ T++ G++++G + ++PCTP G++ L+K + + G NAVV+GRS I+G P A LL
Sbjct: 122 GVTTLSFGKLSMG-VETYLPCTPYGMVLLLKEYGIDVTGKNAVVVGRSPILGKPMAMLLT 180
Query: 192 WKHATVTVCHSKTKNIQDVVK 212
+ATVT+CHSKT+N+ +V+
Sbjct: 181 EMNATVTLCHSKTQNLPSIVR 201
>gnl|CDD|184550 PRK14169, PRK14169, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 282
Score = 145 bits (368), Expect = 4e-43
Identities = 78/204 (38%), Positives = 124/204 (60%), Gaps = 5/204 (2%)
Query: 10 AQILSGTAVSGDIREGLKERVKKLKERLPDFEPGLAIVQVGGREDSNVYIRMKMKAAKEI 69
A L G AVS I LK+ V KL ++ D P LA+V VG S VY+R K + A++I
Sbjct: 1 ATRLDGRAVSKKILADLKQTVAKLAQQ--DVTPTLAVVLVGSDPASEVYVRNKQRRAEDI 58
Query: 70 GIDAQHVKLPRSITEIELLSRLKKLNEDPSVHGIIVQMPLDSDNDINAMLVTDSVSPEKD 129
G+ + +LP + T+ +LL+++ +LN DP V I+VQ+PL + ++ V D++ P+KD
Sbjct: 59 GVRSLMFRLPEATTQADLLAKVAELNHDPDVDAILVQLPLPA--GLDEQAVIDAIDPDKD 116
Query: 130 VDGLNTINEGRVAIGDMNGFIPCTPNGVLELIKRTNVTIAGTNAVVLGRSKIVGTPAAEL 189
VDG + ++ GR+ + + TP G++ L+ ++ +AG V++GRS IVG P A L
Sbjct: 117 VDGFSPVSVGRLWANE-PTVVASTPYGIMALLDAYDIDVAGKRVVIVGRSNIVGRPLAGL 175
Query: 190 LKWKHATVTVCHSKTKNIQDVVKS 213
+ ATVT+ HSKT+N++ + K
Sbjct: 176 MVNHDATVTIAHSKTRNLKQLTKE 199
>gnl|CDD|237633 PRK14168, PRK14168, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 297
Score = 144 bits (364), Expect = 2e-42
Identities = 81/203 (39%), Positives = 121/203 (59%), Gaps = 8/203 (3%)
Query: 10 AQILSGTAVSGDIREGLKERVKKLKERLPDFEPGLAIVQVGGREDSNVYIRMKMKAAKEI 69
A+I+ GT + +I E ++ V +LKE+ PGL + VG S Y+ +K+K A +
Sbjct: 3 AKIIKGTEIREEILEEIRGEVAELKEKYGKV-PGLVTILVGESPASLSYVTLKIKTAHRL 61
Query: 70 GIDAQHVKLPRSITEIELLSRLKKLNEDPSVHGIIVQMPLDSDNDINAMLVTDSVSPEKD 129
G ITE ELL+ + K N D S+HGI+VQ+PL IN V +++ P+KD
Sbjct: 62 GFHEIQDNQSVDITEEELLALIDKYNNDDSIHGILVQLPLPK--HINEKKVLNAIDPDKD 119
Query: 130 VDGLNTINEGRVAI-GDMNGFIPCTPNGVLELIKRTNVTIAGTNAVVLGRSKIVGTPAAE 188
VDG + +N GR+ I GD F+PCTP G+ E++ R+ V +G VV+GRS IVG P A
Sbjct: 120 VDGFHPVNVGRLMIGGDEVKFLPCTPAGIQEMLVRSGVETSGAEVVVVGRSNIVGKPIAN 179
Query: 189 LLKWK----HATVTVCHSKTKNI 207
++ K +ATVT+ H+++KN+
Sbjct: 180 MMTQKGPGANATVTIVHTRSKNL 202
>gnl|CDD|172654 PRK14166, PRK14166, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 282
Score = 143 bits (362), Expect = 3e-42
Identities = 83/197 (42%), Positives = 121/197 (61%), Gaps = 4/197 (2%)
Query: 12 ILSGTAVSGDIREGLKERVKKLKERLPDFEPGLAIVQVGGREDSNVYIRMKMKAAKEIGI 71
+L G A+S I+E LKE+ + LK + E LA++ VG S Y++ K KA +E GI
Sbjct: 3 LLDGKALSAKIKEELKEKNQFLKSK--GIESCLAVILVGDNPASQTYVKSKAKACEECGI 60
Query: 72 DAQHVKLPRSITEIELLSRLKKLNEDPSVHGIIVQMPLDSDNDINAMLVTDSVSPEKDVD 131
+ L + T+ ELL+ + LN D SVHGI+VQ+PL I L+ +S+ KDVD
Sbjct: 61 KSLVYHLNENTTQNELLALINTLNHDDSVHGILVQLPLPDH--ICKDLILESIISSKDVD 118
Query: 132 GLNTINEGRVAIGDMNGFIPCTPNGVLELIKRTNVTIAGTNAVVLGRSKIVGTPAAELLK 191
G + IN G + +G +GF+PCTP GV++L+K + + G +AV++G S IVG P A +L
Sbjct: 119 GFHPINVGYLNLGLESGFLPCTPLGVMKLLKAYEIDLEGKDAVIIGASNIVGRPMATMLL 178
Query: 192 WKHATVTVCHSKTKNIQ 208
ATV+VCH KTK++
Sbjct: 179 NAGATVSVCHIKTKDLS 195
>gnl|CDD|172682 PRK14194, PRK14194, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 301
Score = 143 bits (362), Expect = 7e-42
Identities = 76/202 (37%), Positives = 121/202 (59%), Gaps = 5/202 (2%)
Query: 7 QQQAQILSGTAVSGDIREGLKERVKKLKERLPDFEPGLAIVQVGGREDSNVYIRMKMKAA 66
A+++ G A + + ++E V+ LK EP LA++ VG S VY+R K+ A
Sbjct: 1 LMSAKLIDGKAAAARVLAQVREDVRTLKAA--GIEPALAVILVGNDPASQVYVRNKILRA 58
Query: 67 KEIGIDAQHVKLPRSITEIELLSRLKKLNEDPSVHGIIVQMPLDSDNDINAMLVTDSVSP 126
+E GI + +LP ++ LL+ + +LN DPSV+GI++Q+PL + I+ V +++P
Sbjct: 59 EEAGIRSLEHRLPADTSQARLLALIAELNADPSVNGILLQLPLPA--HIDEARVLQAINP 116
Query: 127 EKDVDGLNTINEGRVAIGDMNGFIPCTPNGVLELIKRTNVTIAGTNAVVLGRSKIVGTPA 186
KDVDG ++ N G ++ G + PCTP+G L L++ T + G +AVV+GRS IVG P
Sbjct: 117 LKDVDGFHSENVGGLSQG-RDVLTPCTPSGCLRLLEDTCGDLTGKHAVVIGRSNIVGKPM 175
Query: 187 AELLKWKHATVTVCHSKTKNIQ 208
A LL H +VTV HS++ + +
Sbjct: 176 AALLLQAHCSVTVVHSRSTDAK 197
>gnl|CDD|172670 PRK14182, PRK14182, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 282
Score = 142 bits (358), Expect = 1e-41
Identities = 76/196 (38%), Positives = 117/196 (59%), Gaps = 4/196 (2%)
Query: 12 ILSGTAVSGDIREGLKERVKKLKERLPDFEPGLAIVQVGGREDSNVYIRMKMKAAKEIGI 71
++ G ++ ++ + V+ L R + GL +V+VG S +Y+R K K +E+GI
Sbjct: 3 LIDGKQIAAKVKGEVATEVRALAAR--GVQTGLTVVRVGDDPASAIYVRGKRKDCEEVGI 60
Query: 72 DAQHVKLPRSITEIELLSRLKKLNEDPSVHGIIVQMPLDSDNDINAMLVTDSVSPEKDVD 131
+ LP + T+ ELL+ + +LN DP+VHGI+VQ+PL D A+L D++SP KD D
Sbjct: 61 TSVEHHLPATTTQAELLALIARLNADPAVHGILVQLPLPKHVDERAVL--DAISPAKDAD 118
Query: 132 GLNTINEGRVAIGDMNGFIPCTPNGVLELIKRTNVTIAGTNAVVLGRSKIVGTPAAELLK 191
G + N G ++IG PCTP GV+ ++ V G A+V+GRS IVG P A +L
Sbjct: 119 GFHPFNVGALSIGIAGVPRPCTPAGVMRMLDEARVDPKGKRALVVGRSNIVGKPMAMMLL 178
Query: 192 WKHATVTVCHSKTKNI 207
+HATVT+ HS+T ++
Sbjct: 179 ERHATVTIAHSRTADL 194
>gnl|CDD|172668 PRK14180, PRK14180, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 282
Score = 134 bits (339), Expect = 8e-39
Identities = 75/197 (38%), Positives = 112/197 (56%), Gaps = 3/197 (1%)
Query: 12 ILSGTAVSGDIREGLKERVKKLKERLPDFEPGLAIVQVGGREDSNVYIRMKMKAAKEIGI 71
++ G ++S D++E L +V++ K P L + VG S Y+ K KA ++GI
Sbjct: 3 LIDGKSLSKDLKERLATQVQEYKHHTA-ITPKLVAIIVGNDPASKTYVASKEKACAQVGI 61
Query: 72 DAQHVKLPRSITEIELLSRLKKLNEDPSVHGIIVQMPLDSDNDINAMLVTDSVSPEKDVD 131
D+Q + LP TE ELL + +LN D SVH I+VQ+PL + IN V S+ PEKDVD
Sbjct: 62 DSQVITLPEHTTESELLELIDQLNNDSSVHAILVQLPLPAH--INKNNVIYSIKPEKDVD 119
Query: 132 GLNTINEGRVAIGDMNGFIPCTPNGVLELIKRTNVTIAGTNAVVLGRSKIVGTPAAELLK 191
G + N GR+ + D CTP G++ +++ + G AVV+G S +VG P ++LL
Sbjct: 120 GFHPTNVGRLQLRDKKCLESCTPKGIMTMLREYGIKTEGAYAVVVGASNVVGKPVSQLLL 179
Query: 192 WKHATVTVCHSKTKNIQ 208
ATVT CH T +++
Sbjct: 180 NAKATVTTCHRFTTDLK 196
>gnl|CDD|133448 cd01080, NAD_bind_m-THF_DH_Cyclohyd, NADP binding domain of
methylene-tetrahydrofolate dehydrogenase/cyclohydrolase.
NADP binding domain of the Methylene-Tetrahydrofolate
Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase)
bifunctional enzyme. Tetrahydrofolate is a versatile
carrier of activated one-carbon units. The major
one-carbon folate donors are N-5 methyltetrahydrofolate,
N5,N10-m-THF, and N10-formayltetrahydrofolate. The
oxidation of metabolic intermediate m-THF to m-THF
requires the enzyme m-THF DH. In addition, most DHs also
have an associated cyclohydrolase activity which
catalyzes its hydrolysis to N10-formyltetrahydrofolate.
m-THF DH is typically found as part of a multifunctional
protein in eukaryotes. NADP-dependent m-THF DH in
mammals, birds and yeast are components of a
trifunctional enzyme with DH, cyclohydrolase, and
synthetase activities. Certain eukaryotic cells also
contain homodimeric bifunctional DH/cyclodrolase form.
In bacteria, monofucntional DH, as well as bifunctional
m-THF m-THF DHm-THF DHDH/cyclodrolase are found. In
addition, yeast (S. cerevisiae) also express an
monofunctional DH. This family contains the bifunctional
DH/cyclohydrolase. M-THF DH, like other amino acid
DH-like NAD(P)-binding domains, is a member of the
Rossmann fold superfamily which includes glutamate,
leucine, and phenylalanine DHs, m-THF DH,
methylene-tetrahydromethanopterin DH, m-THF
DH/cyclohydrolase, Shikimate DH-like proteins, malate
oxidoreductases, and glutamyl tRNA reductase. Amino acid
DHs catalyze the deamination of amino acids to keto
acids with NAD(P)+ as a cofactor. The NAD(P)-binding
Rossmann fold superfamily includes a wide variety of
protein families including NAD(P)- binding domains of
alcohol DHs, tyrosine-dependent oxidoreductases,
glyceraldehyde-3-phosphate DH, lactate/malate DHs,
formate/glycerate DHs, siroheme synthases,
6-phosphogluconate DH, amino acid DHs, repressor rex,
NAD-binding potassium channel domain, CoA-binding, and
ornithine cyclodeaminase-like domains.
Length = 168
Score = 129 bits (327), Expect = 4e-38
Identities = 53/88 (60%), Positives = 67/88 (76%), Gaps = 1/88 (1%)
Query: 126 PEKDVDGLNTINEGRVAIGDMNGFIPCTPNGVLELIKRTNVTIAGTNAVVLGRSKIVGTP 185
PEKDVDGL+ +N GR+A+G GFIPCTP G+LEL+KR + +AG VV+GRS IVG P
Sbjct: 1 PEKDVDGLHPVNLGRLALGR-PGFIPCTPAGILELLKRYGIDLAGKKVVVVGRSNIVGKP 59
Query: 186 AAELLKWKHATVTVCHSKTKNIQDVVKS 213
A LL ++ATVTVCHSKTKN+++ K
Sbjct: 60 LAALLLNRNATVTVCHSKTKNLKEHTKQ 87
>gnl|CDD|217267 pfam02882, THF_DHG_CYH_C, Tetrahydrofolate
dehydrogenase/cyclohydrolase, NAD(P)-binding domain.
Length = 160
Score = 113 bits (285), Expect = 6e-32
Identities = 42/80 (52%), Positives = 58/80 (72%), Gaps = 1/80 (1%)
Query: 134 NTINEGRVAIGDMNGFIPCTPNGVLELIKRTNVTIAGTNAVVLGRSKIVGTPAAELLKWK 193
+ IN GR+ +G GF+PCTP G++EL+KR + +AG N VV+GRS IVG P A LL
Sbjct: 1 HPINLGRLVLG-EPGFVPCTPRGIMELLKRYGIDLAGKNVVVIGRSNIVGKPLALLLLNA 59
Query: 194 HATVTVCHSKTKNIQDVVKS 213
+ATVTVCHSKTK++ ++ +
Sbjct: 60 NATVTVCHSKTKDLAEITRE 79
>gnl|CDD|133451 cd05212, NAD_bind_m-THF_DH_Cyclohyd_like, NAD(P) binding domain of
methylene-tetrahydrofolate dehydrogenase and
methylene-tetrahydrofolate dehydrogenase/cyclohydrolase.
NAD(P) binding domains of methylene-tetrahydrofolate
dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase
bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is
a versatile carrier of activated one-carbon units. The
major one-carbon folate donors are N-5
methyltetrahydrofolate, N5,N10-m-THF, and
N10-formayltetrahydrofolate. The oxidation of metabolic
intermediate m-THF to m-THF requires the enzyme m-THF
DH. In addition, most DHs also have an associated
cyclohydrolase activity which catalyzes its hydrolysis
to N10-formyltetrahydrofolate. m-THF DH is typically
found as part of a multifunctional protein in
eukaryotes. NADP-dependent m-THF DH in mammals, birds
and yeast are components of a trifunctional enzyme with
DH, cyclohydrolase, and synthetase activities. Certain
eukaryotic cells also contain homodimeric bifunctional
DH/cyclodrolase form. In bacteria, mono-functional DH,
as well as bifunctional DH/cyclodrolase are found. In
addition, yeast (S. cerevisiae) also express a
monofunctional DH. M-THF DH, like other amino acid
DH-like NAD(P)-binding domains, is a member of the
Rossmann fold superfamily which includes glutamate,
leucine, and phenylalanine DHs, m-THF DH,
methylene-tetrahydromethanopterin DH, m-THF
DH/cyclohydrolase, Shikimate DH-like proteins, malate
oxidoreductases, and glutamyl tRNA reductase. Amino acid
DHs catalyze the deamination of amino acids to keto
acids with NAD(P)+ as a cofactor. The NAD(P)-binding
Rossmann fold superfamily includes a wide variety of
protein families including NAD(P)- binding domains of
alcohol DHs, tyrosine-dependent oxidoreductases,
glyceraldehyde-3-phosphate DH, lactate/malate DHs,
formate/glycerate DHs, siroheme synthases,
6-phosphogluconate DH, amino acid DHs, repressor rex,
NAD-binding potassium channel domain, CoA-binding, and
ornithine cyclodeaminase-like domains. These domains
have an alpha-beta-alpha configuration. NAD binding
involves numerous hydrogen and van der Waals contacts.
Length = 140
Score = 59.8 bits (145), Expect = 1e-11
Identities = 25/66 (37%), Positives = 31/66 (46%), Gaps = 7/66 (10%)
Query: 150 IPCTPNGVLELIKRT-------NVTIAGTNAVVLGRSKIVGTPAAELLKWKHATVTVCHS 202
PCTP V + K V + G +V+GRS IVG P LL+ ATV C
Sbjct: 1 GPCTPLFVSPVAKAVKELLNKEGVRLDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDW 60
Query: 203 KTKNIQ 208
KT +Q
Sbjct: 61 KTIQLQ 66
>gnl|CDD|133447 cd01079, NAD_bind_m-THF_DH, NAD binding domain of
methylene-tetrahydrofolate dehydrogenase. The
NAD-binding domain of methylene-tetrahydrofolate
dehydrogenase (m-THF DH). M-THF is a versatile carrier
of activated one-carbon units. The major one-carbon
folate donors are N-5 methyltetrahydrofolate,
N5,N10-m-THF, and N10-formayltetrahydrofolate. The
oxidation of metabolic intermediate m-THF to m-THF
requires the enzyme m-THF DH. M-THF DH is a component of
an unusual monofunctional enzyme; in eukaryotes, m-THF
DH is typically found as part of a multifunctional
protein. NADP-dependent m-THF DHs in mammals, birds and
yeast are components of a trifunctional enzyme with DH,
cyclohydrolase, and synthetase activities. Certain
eukaryotic cells also contain homodimeric bifunctional
DH/cyclodrolase form. In bacteria, monofunctional DH, as
well as bifunctional DH/cyclodrolase are found. In
addition, yeast (S. cerevisiae) also express an
monofunctional DH. This family contains only the
monofunctional DHs from S. cerevisiae and certain
bacteria. M-THF DH, like other amino acid DH-like
NAD(P)-binding domains, is a member of the Rossmann fold
superfamily which includes glutamate, leucine, and
phenylalanine DHs, m-THF DH,
methylene-tetrahydromethanopterin DH, m-THF
DH/cyclohydrolase, Shikimate DH-like proteins, malate
oxidoreductases, and glutamyl tRNA reductase. Amino acid
DHs catalyze the deamination of amino acids to keto
acids with NAD(P)+ as a cofactor. The NAD(P)-binding
Rossmann fold superfamily includes a wide variety of
protein families including NAD(P)- binding domains of
alcohol DHs, tyrosine-dependent oxidoreductases,
glyceraldehyde-3-phosphate DH, lactate/malate DHs,
formate/glycerate DHs, siroheme synthases,
6-phosphogluconate DH, amino acid DHs, repressor rex,
NAD-binding potassium channel domain, CoA-binding, and
ornithine cyclodeaminase-like domains. These domains
have an alpha-beta-alpha configuration. NAD binding
involves numerous hydrogen and van der Waals contacts.
Length = 197
Score = 36.3 bits (84), Expect = 0.006
Identities = 26/94 (27%), Positives = 36/94 (38%), Gaps = 27/94 (28%)
Query: 126 PEKDVDGLNTIN-------------EGRVAIGDMNGFIPCTPNGV---LELIKRTNVTIA 169
P KDV+GL+ E R +PCTP + LE + N +
Sbjct: 1 PHKDVEGLSHKYIFNLYHNIRFLDPENRK-----KSILPCTPLAIVKILEFLGIYNKILP 55
Query: 170 ------GTNAVVLGRSKIVGTPAAELLKWKHATV 197
G ++ RS++VG P A LL A V
Sbjct: 56 YGNRLYGKTITIINRSEVVGRPLAALLANDGARV 89
>gnl|CDD|198065 smart00997, AdoHcyase_NAD, S-adenosyl-L-homocysteine hydrolase, NAD
binding domain.
Length = 162
Score = 32.4 bits (75), Expect = 0.085
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Query: 161 IKR-TNVTIAGTNAVVLGRSKIVGTPAAELLKWKHATVTVC 200
I R TNV +AG N VV G VG A L+ A V V
Sbjct: 13 ILRATNVLLAGKNVVVAGYGD-VGKGVAARLRGLGARVIVT 52
>gnl|CDD|222508 pfam14033, DUF4246, Protein of unknown function (DUF4246). This
family of proteins is functionally uncharacterized. This
family of proteins is found in bacteria and fungi.
Proteins in this family are typically between 392 and
644 amino acids in length.
Length = 496
Score = 33.0 bits (76), Expect = 0.10
Identities = 16/33 (48%), Positives = 21/33 (63%), Gaps = 3/33 (9%)
Query: 14 SGTAVSGDIREGLKERVKKLK---ERLPDFEPG 43
S TAVS +R L+E V+KL+ E L D+ PG
Sbjct: 88 SDTAVSESLRTELREAVRKLEDVPEGLKDYHPG 120
>gnl|CDD|107357 cd06362, PBP1_mGluR, Ligand binding domain of the metabotropic
glutamate receptors (mGluR). Ligand binding domain of
the metabotropic glutamate receptors (mGluR), which are
members of the family C of G-protein-coupled receptors
that transduce extracellular signals into G-protein
activation and ultimately into cellular responses.
mGluRs bind to glutamate and function as an excitatory
neurotransmitter; they are involved in learning, memory,
anxiety, and the perception of pain. Eight subtypes of
mGluRs have been cloned so far, and are classified into
three groups according to their sequence similarities,
transduction mechanisms, and pharmacological profiles.
Group I is composed of mGlu1R and mGlu5R that both
stimulate PLC hydrolysis. Group II includes mGlu2R and
mGlu3R, which inhibit adenylyl cyclase, as do mGlu4R,
mGlu6R, mGlu7R, and mGlu8R, which form group III.
Length = 452
Score = 32.6 bits (75), Expect = 0.14
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 63 MKAAKEIGI-DAQHVKLPRSITEIELLSRLKKLNEDPSVHGIIV 105
K A E GI A K+P S TE E + ++KL P+ +++
Sbjct: 193 EKLAAERGICIAGSEKIPSSATEEEFDNIIRKLLSKPNARVVVL 236
>gnl|CDD|235488 PRK05476, PRK05476, S-adenosyl-L-homocysteine hydrolase;
Provisional.
Length = 425
Score = 31.6 bits (73), Expect = 0.29
Identities = 19/41 (46%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Query: 161 IKR-TNVTIAGTNAVVLGRSKIVGTPAAELLKWKHATVTVC 200
IKR TNV IAG VV G VG A+ L+ A V V
Sbjct: 202 IKRATNVLIAGKVVVVAGYGD-VGKGCAQRLRGLGARVIVT 241
>gnl|CDD|224274 COG1355, COG1355, Predicted dioxygenase [General function
prediction only].
Length = 279
Score = 30.8 bits (70), Expect = 0.44
Identities = 22/74 (29%), Positives = 31/74 (41%), Gaps = 17/74 (22%)
Query: 125 SPEKDVDGLNTINEGRVAIGDMNGFIPCTPNGVLELIKRTNVTI--AGTNAVVLGRSKIV 182
KD + I + G EL++RTN T+ G AV+L SK +
Sbjct: 201 VRRKDRILIKAILALDLD-------------GFYELLERTNATMCGYGPIAVLLEASKKL 247
Query: 183 GTPAAELLKWKHAT 196
G A+LL +AT
Sbjct: 248 GAKEAKLL--DYAT 259
>gnl|CDD|176210 cd08248, RTN4I1, Human Reticulon 4 Interacting Protein 1. Human
Reticulon 4 Interacting Protein 1 is a member of the
medium chain dehydrogenase/ reductase (MDR) family.
Riticulons are endoplasmic reticulum associated proteins
involved in membrane trafficking and neuroendocrine
secretion. The MDR/zinc-dependent alcohol
dehydrogenase-like family, which contains the
zinc-dependent alcohol dehydrogenase (ADH-Zn) and
related proteins, is a diverse group of proteins related
to the first identified member, class I mammalian ADH.
MDRs display a broad range of activities and are
distinguished from the smaller short chain
dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
acids of the MDR). The MDR proteins have 2 domains: a
C-terminal NAD(P) binding-Rossmann fold domain of a
beta-alpha form and an N-terminal catalytic domain with
distant homology to GroES.
Length = 350
Score = 30.3 bits (69), Expect = 0.68
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 167 TIAGTNAVVLGRSKIVGTPAAELLK-WKHATVTVCHSK 203
AG ++LG S VGT A +LLK W T C +
Sbjct: 160 NAAGKRVLILGGSGGVGTFAIQLLKAWGAHVTTTCSTD 197
>gnl|CDD|223984 COG1056, NadR, Nicotinamide mononucleotide adenylyltransferase
[Coenzyme metabolism].
Length = 172
Score = 29.6 bits (67), Expect = 0.70
Identities = 15/42 (35%), Positives = 22/42 (52%)
Query: 53 EDSNVYIRMKMKAAKEIGIDAQHVKLPRSITEIELLSRLKKL 94
E S IR KM +++ D + SITEI + RL++L
Sbjct: 128 EYSGTAIRRKMLGGEDVWEDLVPTFVAESITEIRGVPRLRQL 169
>gnl|CDD|107029 PHA01351, PHA01351, putative minor structural protein.
Length = 1070
Score = 30.3 bits (68), Expect = 0.76
Identities = 20/48 (41%), Positives = 26/48 (54%)
Query: 5 AVQQQAQILSGTAVSGDIREGLKERVKKLKERLPDFEPGLAIVQVGGR 52
A+ Q +Q LS I + L V KL E LP+FE LA V +GG+
Sbjct: 160 AISQLSQFLSPFIAPITIGKFLPVIVDKLAEILPEFEIDLAPVGLGGK 207
>gnl|CDD|99731 cd06410, PB1_UP2, Uncharacterized protein 2. The PB1 domain is a
modular domain mediating specific protein-protein
interaction which play a role in many critical cell
processes such as osteoclastogenesis, angiogenesis,
early cardiovascular development, and cell polarity. A
canonical PB1-PB1 interaction, which involves
heterodimerization of two PB1 domains, is required for
the formation of macromolecular signaling complexes
ensuring specificity and fidelity during cellular
signaling. The interaction between two PB1 domain
depends on the type of PB1. There are three types of PB1
domains: type I which contains an OPCA motif, acidic
aminoacid cluster, type II which contains a basic
cluster, and type I/II which contains both an OPCA motif
and a basic cluster. Interactions of PB1 domains with
other protein domains have been described as
noncanonical PB1-interactions.
Length = 97
Score = 28.7 bits (65), Expect = 0.82
Identities = 23/70 (32%), Positives = 40/70 (57%), Gaps = 8/70 (11%)
Query: 69 IGIDAQHVKLPRSITEIELLSRLKKLNEDPSVHGIIVQMPLDSDNDINAMLVTDSVSPEK 128
+G + + V + RSI+ EL+S+L +L V + Q+P D D++A L+ SVS ++
Sbjct: 20 VGGETRIVSVDRSISFKELVSKLSELFGAGVVVTLKYQLP---DEDLDA-LI--SVSNDE 73
Query: 129 DVDGLNTINE 138
D+ N + E
Sbjct: 74 DLK--NMMEE 81
>gnl|CDD|107371 cd06376, PBP1_mGluR_groupIII, Ligand-binding domain of the group
III metabotropic glutamate receptor. Ligand-binding
domain of the group III metabotropic glutamate receptor,
a family which contains mGlu4R, mGluR6R, mGluR7, and
mGluR8; all of which inhibit adenylyl cyclase. The
metabotropic glutamate receptor is a member of the
family C of G-protein-coupled receptors that transduce
extracellular signals into G-protein activation and
ultimately into intracellular responses. The mGluRs are
classified into three groups which comprise eight
subtypes.
Length = 463
Score = 29.9 bits (67), Expect = 0.93
Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
Query: 63 MKAAKEIG--IDAQHVKLPRSITEIELLSRLKKLNEDPSVHGIIVQMPLDSDNDINAML 119
+ ++E G AQ +K+PR E +K+L E P+ +I+ +++DI +L
Sbjct: 193 TQISREAGGVCIAQSIKIPREPRPGEFDKIIKRLLETPNARAVII---FANEDDIRRVL 248
>gnl|CDD|99989 cd03819, GT1_WavL_like, This family is most closely related to the
GT1 family of glycosyltransferases. WavL in Vibrio
cholerae has been shown to be involved in the
biosynthesis of the lipopolysaccharide core.
Length = 355
Score = 29.5 bits (67), Expect = 1.4
Identities = 26/105 (24%), Positives = 38/105 (36%), Gaps = 28/105 (26%)
Query: 17 AVSGDIREGLKERVKKLKERL---------PDFEPGLAIVQVGGREDSNVYIRMKMKAAK 67
AVS I + ++E +R+ F+PG I
Sbjct: 130 AVSNFIADHIRENYGVDPDRIRVIPRGVDLDRFDPGAV---------PPERILAL-AREW 179
Query: 68 EIGIDAQHVKLPRSITE-------IELLSRLKKLNEDPSVHGIIV 105
+ + LP +T IE L+RLKK +DP VH +IV
Sbjct: 180 PLPKGKPVILLPGRLTRWKGQEVFIEALARLKK--DDPDVHLLIV 222
>gnl|CDD|224437 COG1520, COG1520, FOG: WD40-like repeat [Function unknown].
Length = 370
Score = 29.1 bits (65), Expect = 1.9
Identities = 7/52 (13%), Positives = 19/52 (36%), Gaps = 2/52 (3%)
Query: 135 TINEGRVAIGDMNGFIPC--TPNGVLELIKRTNVTIAGTNAVVLGRSKIVGT 184
++G++ +G +G + G L + + + V+G +
Sbjct: 108 LGSDGKIYVGSWDGKLYALDASTGTLVWSRNVGGSPYYASPPVVGDGTVYVG 159
>gnl|CDD|235461 PRK05431, PRK05431, seryl-tRNA synthetase; Provisional.
Length = 425
Score = 28.5 bits (65), Expect = 2.8
Identities = 17/61 (27%), Positives = 23/61 (37%), Gaps = 19/61 (31%)
Query: 19 SGDIREGLKERVKKLKERLPDFEPGLAIVQ-------------------VGGREDSNVYI 59
G+ E L VK+LKE + E L ++ VG ED NV +
Sbjct: 64 KGEDAEALIAEVKELKEEIKALEAELDELEAELEELLLRIPNLPHDSVPVGKDEDDNVEV 123
Query: 60 R 60
R
Sbjct: 124 R 124
>gnl|CDD|215240 PLN02439, PLN02439, arginine decarboxylase.
Length = 559
Score = 28.5 bits (64), Expect = 2.9
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 91 LKKLNEDPSVHGIIVQMPLDSDNDIN 116
L +L+E P+V GI+ + DSD I+
Sbjct: 412 LHRLDERPTVRGILSDLTCDSDGKID 437
>gnl|CDD|223573 COG0499, SAM1, S-adenosylhomocysteine hydrolase [Coenzyme
metabolism].
Length = 420
Score = 28.4 bits (64), Expect = 3.0
Identities = 18/40 (45%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Query: 161 IKR-TNVTIAGTNAVVLGRSKIVGTPAAELLKWKHATVTV 199
I R TNV +AG N VV G VG A L+ A V V
Sbjct: 199 ILRATNVLLAGKNVVVAGYGW-VGRGIAMRLRGMGARVIV 237
>gnl|CDD|237255 PRK12900, secA, preprotein translocase subunit SecA; Reviewed.
Length = 1025
Score = 28.2 bits (63), Expect = 3.6
Identities = 14/37 (37%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Query: 26 LKERVKKLKERLPDFEPGLAIVQVG-GREDSNVYIRM 61
L E K LK + DF+ GLA+++V G+ ++ +I+M
Sbjct: 315 LTEAEKALKTKPNDFDAGLALLRVKRGQPKNSRFIKM 351
>gnl|CDD|177067 CHL00145, psaD, photosystem I subunit II; Validated.
Length = 139
Score = 27.0 bits (60), Expect = 4.6
Identities = 14/36 (38%), Positives = 17/36 (47%), Gaps = 7/36 (19%)
Query: 122 DSVSPEKDVDGLNTINEGRVAIGDMNGFIPCTPNGV 157
D V PEK +N GRVA+G + I PN
Sbjct: 100 DGVFPEK-------VNPGRVAVGSRDFSIGKNPNPA 128
>gnl|CDD|216752 pfam01871, AMMECR1, AMMECR1. This family consists of several
AMMECR1 as well as several uncharacterized proteins. The
contiguous gene deletion syndrome AMME is characterized
by Alport syndrome, midface hypoplasia, mental
retardation and elliptocytosis and is caused by a
deletion in Xq22.3, comprising several genes including
COL4A5, FACL4 and AMMECR1. This family contains
sequences from several eukaryotic species as well as
archaebacteria and it has been suggested that the
AMMECR1 protein may have a basic cellular function,
potentially in either the transcription, replication,
repair or translation machinery.
Length = 172
Score = 27.1 bits (61), Expect = 5.1
Identities = 9/33 (27%), Positives = 16/33 (48%), Gaps = 5/33 (15%)
Query: 78 LPRSITEIELLSRLKKLNEDPS-----VHGIIV 105
LP E+ +LS + ++ D HG+I+
Sbjct: 84 LPDLTIEVSVLSPPEPIDVDLEDLEVGRHGLII 116
>gnl|CDD|143503 cd06830, PLPDE_III_ADC, Type III Pyridoxal 5-phosphate
(PLP)-Dependent Enzyme Arginine Decarboxylase. This
subfamily includes plants and biosynthetic prokaryotic
arginine decarboxylases (ADC, EC 4.1.1.19). ADC is
involved in the biosynthesis of putrescine, which is the
precursor of aliphatic polyamines in many organisms. It
catalyzes the decarboxylation of L-arginine to agmatine,
which is then hydrolyzed to putrescine by agmatinase.
ADC is homologous to eukaryotic ornithine decarboxylase
(ODC) and diaminopimelate decarboxylase (DapDC), which
are fold type III PLP-dependent enzymes that contain an
N-terminal PLP-binding TIM-barrel domain and a
C-terminal beta-sandwich domain, similar to bacterial
alanine racemases. Homodimer formation and the presence
of both PLP and Mg2+ cofactors may be required for
catalytic activity. Prokaryotic ADCs (biodegradative),
which are fold type I PLP-dependent enzymes, are not
included in this family.
Length = 409
Score = 27.5 bits (62), Expect = 5.7
Identities = 10/37 (27%), Positives = 19/37 (51%)
Query: 91 LKKLNEDPSVHGIIVQMPLDSDNDINAMLVTDSVSPE 127
L +LNE P+ ++ + DSD I++ + + P
Sbjct: 332 LHRLNEKPTRRAVLGDITCDSDGKIDSFIDPPDILPT 368
>gnl|CDD|129050 smart00814, Alpha_TIF, Alpha trans-inducing protein (Alpha-TIF).
Alpha-TIF (VP16) from Herpes Simplex virus is an
essential tegument protein involved in the
transcriptional activation of viral immediate early (IE)
promoters (alpha genes) during the lytic phase of viral
infection. VP16 associates with cellular transcription
factors to enhance transcription rates, including the
general transcription factor TFIIB and the
transcriptional coactivator PC4. The N-terminal residues
of VP16 confer specificity for the IE genes, while the
C-terminal residues are responsible for transcriptional
activation. Within the C-terminal region are two
activation regions that can independently and
cooperatively activate transcription. VP16 forms a
transcriptional regulatory complex with two cellular
proteins, the POU-domain transcription factor Oct-1 and
the cell-proliferation factor HCF-1. VP16 is an
alpha/beta protein with an unusual fold. Other
transcription factors may have a similar topology.
Length = 356
Score = 27.3 bits (61), Expect = 5.8
Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 7/51 (13%)
Query: 87 LLSRLKKLNEDPSVHGIIVQMPLDSDNDINAMLVTDSVSPEKDVDGLNTIN 137
LLS L+ NED + P + D A ++ S SP + ++ L+T
Sbjct: 51 LLSALETWNED-----LFSCFPTNEDLYREAKIL--STSPSEVIELLSTPE 94
>gnl|CDD|212126 cd10815, GH38N_AMII_EcMngB_like, N-terminal catalytic domain of
Escherichia coli alpha-mannosidase MngB and its
bacterial homologs; glycoside hydrolase family 38
(GH38). The bacterial subfamily is represented by
Escherichia coli alpha-mannosidase MngB, which is
encoded by the mngB gene (previously called ybgG). MngB
exhibits alpha-mannosidase activity that converts
2-O-(6-phospho-alpha-mannosyl)-D-glycerate to
mannose-6-phosphate and glycerate in the pathway which
enables use of mannosyl-D-glycerate as a sole carbon
source. A divalent metal ion is required for its
activity.
Length = 270
Score = 27.1 bits (61), Expect = 6.2
Identities = 9/20 (45%), Positives = 14/20 (70%)
Query: 22 IREGLKERVKKLKERLPDFE 41
IR+ L E +++L E PD+E
Sbjct: 220 IRKNLPEVIEELNEISPDYE 239
>gnl|CDD|240619 cd00401, SAHH, S-Adenosylhomocysteine Hydrolase, NAD-binding and
catalytic domains. S-adenosyl-L-homocysteine hydrolase
(SAHH, AdoHycase) catalyzes the hydrolysis of
S-adenosyl-L-homocysteine (AdoHyc) to form adenosine
(Ado) and homocysteine (Hcy). The equilibrium lies far
on the side of AdoHyc synthesis, but in nature the
removal of Ado and Hyc is sufficiently fast, so that the
net reaction is in the direction of hydrolysis. Since
AdoHyc is a potent inhibitor of S-adenosyl-L-methionine
dependent methyltransferases, AdoHycase plays a critical
role in the modulation of the activity of various
methyltransferases. The enzyme forms homotetramers, with
each monomer binding one molecule of NAD+.
Length = 402
Score = 27.0 bits (61), Expect = 7.6
Identities = 12/18 (66%), Positives = 12/18 (66%), Gaps = 1/18 (5%)
Query: 161 IKR-TNVTIAGTNAVVLG 177
IKR TNV IAG VV G
Sbjct: 185 IKRATNVLIAGKVVVVAG 202
>gnl|CDD|215518 PLN02959, PLN02959, aminoacyl-tRNA ligase.
Length = 1084
Score = 27.3 bits (61), Expect = 7.8
Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Query: 58 YIRMKMKAAKEIGIDAQHVKLPRSITEIELL 88
+++ K A +G A +KLP EIE+L
Sbjct: 1004 FVKFKKDEAIAVGPQALDLKLPFD--EIEVL 1032
>gnl|CDD|214963 smart00996, AdoHcyase, S-adenosyl-L-homocysteine hydrolase.
Length = 426
Score = 27.1 bits (61), Expect = 8.0
Identities = 19/40 (47%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 161 IKR-TNVTIAGTNAVVLGRSKIVGTPAAELLKWKHATVTV 199
IKR T+V IAG AVV G VG A+ L+ + A V V
Sbjct: 197 IKRATDVMIAGKVAVVCGYGD-VGKGCAQSLRGQGARVIV 235
>gnl|CDD|222156 pfam13472, Lipase_GDSL_2, GDSL-like Lipase/Acylhydrolase family.
This family of presumed lipases and related enzymes are
similar to pfam00657.
Length = 174
Score = 26.3 bits (58), Expect = 9.7
Identities = 10/35 (28%), Positives = 15/35 (42%)
Query: 17 AVSGDIREGLKERVKKLKERLPDFEPGLAIVQVGG 51
VSG R++ L F+P L +V +G
Sbjct: 37 GVSGATTADGLARLEAEVLELLAFKPDLVVVALGT 71
>gnl|CDD|235990 PRK07326, PRK07326, short chain dehydrogenase; Provisional.
Length = 237
Score = 26.5 bits (59), Expect = 9.7
Identities = 11/46 (23%), Positives = 21/46 (45%)
Query: 167 TIAGTNAVVLGRSKIVGTPAAELLKWKHATVTVCHSKTKNIQDVVK 212
++ G A++ G SK +G AE L + V + K +++
Sbjct: 3 SLKGKVALITGGSKGIGFAIAEALLAEGYKVAITARDQKELEEAAA 48
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.315 0.133 0.367
Gapped
Lambda K H
0.267 0.0864 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 10,909,060
Number of extensions: 1057406
Number of successful extensions: 1138
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1041
Number of HSP's successfully gapped: 89
Length of query: 216
Length of database: 10,937,602
Length adjustment: 93
Effective length of query: 123
Effective length of database: 6,812,680
Effective search space: 837959640
Effective search space used: 837959640
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 57 (25.5 bits)